Query 040562
Match_columns 427
No_of_seqs 273 out of 1745
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 15:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3psg_A Pepsinogen; hydrolase(a 100.0 6.9E-62 2.4E-66 474.7 30.1 300 81-423 48-370 (370)
2 2x0b_A Renin; hydrolase-hormon 100.0 1.3E-61 4.4E-66 473.6 23.0 300 81-423 53-383 (383)
3 1tzs_A Cathepsin E; hydrolase, 100.0 1.1E-59 3.7E-64 457.2 28.1 302 84-426 18-345 (351)
4 3cms_A Chymosin B; hydrolase, 100.0 7.7E-60 2.6E-64 453.2 24.5 301 81-423 6-323 (323)
5 3vla_A EDGP; extracellular, in 100.0 1.4E-59 4.7E-64 464.1 26.6 323 85-423 16-399 (413)
6 2apr_A Rhizopuspepsin; hydrola 100.0 1.4E-58 4.7E-63 444.7 30.5 302 79-423 5-324 (325)
7 3c9x_A Trichoderma reesei aspa 100.0 2.7E-59 9.4E-64 450.3 25.5 301 84-422 10-329 (329)
8 4aa9_A Chymosin; hydrolase, as 100.0 1.9E-59 6.4E-64 450.3 23.7 300 82-423 4-320 (320)
9 1oew_A Endothiapepsin; hydrola 100.0 4.6E-59 1.6E-63 448.7 26.5 300 84-422 10-329 (329)
10 1mpp_A Pepsin; hydrolase(acid 100.0 1E-58 3.5E-63 452.3 28.8 309 82-426 11-358 (361)
11 1am5_A Pepsin, acid proteinase 100.0 4.6E-59 1.6E-63 448.1 25.7 297 83-423 6-324 (324)
12 1j71_A Candidapepsin, aspartic 100.0 8.5E-59 2.9E-63 448.0 27.6 298 80-426 3-327 (334)
13 1dpj_A Proteinase A; proteinas 100.0 8.3E-59 2.8E-63 447.3 26.6 298 82-423 6-329 (329)
14 2qzx_A Candidapepsin-5; aspart 100.0 2.4E-58 8E-63 446.5 27.4 299 80-426 3-334 (342)
15 3fv3_A SAPP1P-secreted asparti 100.0 1E-57 3.4E-62 441.7 30.5 298 80-426 3-332 (339)
16 1htr_B Gastricsin; aspartyl pr 100.0 1.5E-58 5.3E-63 445.4 24.3 297 86-423 9-329 (329)
17 3k1w_A Renin; protease, altern 100.0 1.4E-58 4.7E-63 448.2 23.5 300 81-423 10-340 (341)
18 1miq_A Plasmepsin; aspartic pr 100.0 4.3E-58 1.5E-62 448.7 26.5 295 83-423 56-374 (375)
19 3pvk_A Candidapepsin-2; hydrol 100.0 1E-57 3.4E-62 442.4 28.5 300 80-426 3-334 (342)
20 2bju_A Plasmepsin II; aspartic 100.0 1.7E-58 5.9E-63 458.6 23.7 297 81-423 130-450 (453)
21 1qdm_A Prophytepsin; aspartic 100.0 5.6E-58 1.9E-62 459.6 26.7 305 81-423 44-478 (478)
22 3aup_A SBG7S, BG, basic 7S glo 100.0 2.2E-57 7.5E-62 448.8 28.0 325 85-426 17-396 (403)
23 3qvc_A Histo-aspartic protease 100.0 1.2E-57 4.2E-62 453.1 24.2 296 81-423 129-449 (451)
24 1yg9_A Aspartic protease BLA G 100.0 4.2E-57 1.4E-61 435.1 26.2 299 82-423 10-329 (330)
25 1ibq_A Aspergillopepsin; aspar 100.0 4.6E-57 1.6E-61 434.1 26.1 301 81-423 6-325 (325)
26 1izd_A Aspartic proteinase; su 100.0 4.4E-57 1.5E-61 433.7 24.7 300 81-423 7-323 (323)
27 1bxo_A Protein (penicillopepsi 100.0 6.2E-57 2.1E-61 432.8 22.6 300 80-423 6-323 (323)
28 2ewy_A Beta-secretase 2; BACE2 100.0 2.5E-55 8.5E-60 431.8 33.3 309 82-426 6-358 (383)
29 2qp8_A Beta-secretase 1; BACE1 100.0 5.4E-55 1.8E-59 430.9 32.0 306 84-426 16-370 (395)
30 3lpj_A Beta-secretase 1; alzhe 100.0 4.5E-55 1.5E-59 438.7 31.4 307 85-426 70-423 (455)
31 3vf3_A Beta-secretase 1; struc 100.0 2.7E-54 9.3E-59 427.0 30.2 305 87-426 26-377 (402)
32 1t6e_X Xylanase inhibitor; two 100.0 1.5E-54 5.2E-59 425.4 27.1 314 85-423 10-373 (381)
33 1wkr_A Polyporopepsin; hydrola 100.0 2.7E-54 9.1E-59 417.7 27.5 292 82-426 5-336 (340)
34 1b5f_A Protein (cardosin A); h 100.0 4.8E-44 1.6E-48 328.1 17.0 219 81-334 5-238 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 2.2E-38 7.6E-43 291.3 19.6 213 198-423 3-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 5.5E-24 1.9E-28 165.3 9.3 90 81-192 5-96 (97)
37 1b5f_B Protein (cardosin A); h 99.7 4.8E-18 1.7E-22 129.5 7.6 77 344-423 3-87 (87)
38 2i1a_A DNA damage-inducible pr 93.6 0.18 6.1E-06 41.2 7.1 105 281-420 25-134 (148)
39 2i1a_A DNA damage-inducible pr 93.1 0.099 3.4E-06 42.8 4.7 31 87-119 23-53 (148)
40 3s8i_A Protein DDI1 homolog 1; 92.0 0.18 6.3E-06 41.3 4.9 101 290-422 29-135 (148)
41 2hs1_A HIV-1 protease; ultra-h 87.3 0.75 2.6E-05 34.6 4.6 27 92-120 10-36 (99)
42 1fmb_A EIAV protease; hydrolas 87.1 0.61 2.1E-05 35.5 4.0 26 91-118 9-34 (104)
43 3ec0_A Protease; HIV-2, inhibi 84.5 1.3 4.3E-05 33.3 4.5 27 92-120 10-36 (99)
44 3liy_A Protease; hydrolase, hy 82.4 1.2 4E-05 34.3 3.6 32 92-123 12-46 (116)
45 2hah_A Protease, retropepsin; 80.0 1.6 5.5E-05 33.8 3.8 27 91-120 15-41 (116)
46 3sqf_A Protease; folded monome 76.0 2.6 9E-05 32.4 3.8 29 92-122 11-39 (114)
47 3s8i_A Protein DDI1 homolog 1; 72.7 3.1 0.00011 33.8 3.8 31 88-120 22-52 (148)
48 3slz_A GAG-Pro-POL polyprotein 66.0 7.4 0.00025 30.8 4.5 29 90-120 22-50 (132)
49 2rsp_A RSV protease; hydrolase 62.4 8.2 0.00028 30.2 4.1 24 97-122 27-50 (124)
50 3ka2_A [L-Ala51;Gly51']HIV-1 p 61.5 7 0.00024 33.4 3.8 27 91-119 9-35 (203)
51 3ka2_A [L-Ala51;Gly51']HIV-1 p 39.8 25 0.00087 29.9 3.8 27 91-119 113-139 (203)
52 3c9x_A Trichoderma reesei aspa 34.1 41 0.0014 30.8 4.8 38 83-120 187-230 (329)
53 1bxo_A Protein (penicillopepsi 32.3 41 0.0014 30.7 4.4 38 83-120 183-224 (323)
54 1oew_A Endothiapepsin; hydrola 29.8 48 0.0016 30.3 4.4 38 83-120 186-229 (329)
55 1ibq_A Aspergillopepsin; aspar 28.2 57 0.002 29.7 4.7 38 83-120 182-225 (325)
56 2apr_A Rhizopuspepsin; hydrola 27.9 52 0.0018 30.0 4.3 34 87-120 191-229 (325)
57 1b5f_A Protein (cardosin A); h 26.7 59 0.002 28.1 4.3 32 89-120 188-227 (239)
58 1izd_A Aspartic proteinase; su 24.0 60 0.0021 29.6 3.9 34 87-120 187-225 (323)
59 1lya_B Cathepsin D; lysosomal 23.1 67 0.0023 27.7 3.9 33 88-120 98-137 (241)
No 1
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=6.9e-62 Score=474.71 Aligned_cols=300 Identities=25% Similarity=0.416 Sum_probs=256.8
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.++.++.+.+|+++|+||||||+|.|+|||||+++||+|..|....| ..++.|||++|+||+...
T Consensus 48 ~~l~n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C--~~~~~y~~~~SsT~~~~~------------- 112 (370)
T 3psg_A 48 EPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC--SDHNQFNPDDSSTFEATS------------- 112 (370)
T ss_dssp CTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGG--TTSCCBCGGGCTTCEEEE-------------
T ss_pred ecceeccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCccc--CCCCCCCCccCcCcEECC-------------
Confidence 45556789999999999999999999999999999999999984456 688999999999999986
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh-------
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------- 231 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.||++....+ .| ...++||||||++.++
T Consensus 113 ------~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~-----~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~ 180 (370)
T 3psg_A 113 ------QELSITYGTGSM-TGILGYDTVQVGGI-----SDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPV 180 (370)
T ss_dssp ------EEEEEESSSCEE-EEEEEEEEEEETTE-----EEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCH
T ss_pred ------cEEEEEeCCceE-EEEEEEEEEeeCCc-----ccCCeEEEEEEeecccccccCCccceeccCCccccccCCCCH
Confidence 899999999985 59999999999987 999999999998876 34 5678999999998764
Q ss_pred ---hHHhhhhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCC
Q 040562 232 ---LISQMKTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304 (427)
Q Consensus 232 ---l~~ql~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 304 (427)
+.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.. .
T Consensus 181 ~~~l~~q-g~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~-l~~~pv~~---~~~w~v~l~~i~v~g~~~~~----~ 251 (370)
T 3psg_A 181 FDNLWDQ-GLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGS-LNWVPVSV---EGYWQITLDSITMDGETIAC----S 251 (370)
T ss_dssp HHHHHHT-TCSSSSEEEEEEC-----CEEEEETCCCGGGBSSC-CEEEECSE---ETTEEEEECEEESSSSEEEC----T
T ss_pred HHHHHHC-CCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCc-ceeecccc---cceeEEEEeEEEECCEEEec----C
Confidence 3344 5678999999999863 39999999 5567777 99999987 68999999999999987764 3
Q ss_pred CCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCe
Q 040562 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDL 384 (427)
Q Consensus 305 ~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~ 384 (427)
.+..+||||||+++++|++++++|.+++.+... ....+.++|+... .+|+|+|+|+|.+++|++++|+++ .+ .
T Consensus 252 ~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~--~~g~~~v~C~~~~---~lP~i~f~~~g~~~~l~~~~yi~~-~~-~ 324 (370)
T 3psg_A 252 GGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN--SDGEMVISCSSID---SLPDIVFTIDGVQYPLSPSAYILQ-DD-D 324 (370)
T ss_dssp TCEEEEECTTCCSEEEEHHHHHHHHHHTTCEEC--TTCCEECCGGGGG---GCCCEEEEETTEEEEECHHHHEEE-CS-S
T ss_pred CCceEEEcCCCCcEECCHHHHHHHHHHhCCccc--CCCcEEEECCCcc---cCCcEEEEECCEEEEECHHHhccc-CC-C
Confidence 478999999999999999999999999876532 1114677898653 789999999999999999999998 33 4
Q ss_pred EEEE-EEeCC------CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 385 VCSV-FNARD------DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 385 ~C~~-i~~~~------~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
.|++ |++.+ ..||||++|||++|+|||++++|||||+++
T Consensus 325 ~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 325 SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp CEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 6997 77632 359999999999999999999999999975
No 2
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=1.3e-61 Score=473.63 Aligned_cols=300 Identities=22% Similarity=0.364 Sum_probs=257.1
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPP--SQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
.++.++.+.+|+++|+||||||+|.|+|||||+++||+|..|.. ..| ..++.|||++|+||+...
T Consensus 53 ~~l~n~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C--~~~~~y~~~~SsT~~~~~----------- 119 (383)
T 2x0b_A 53 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC--VYHKLFDASDSSSYKHNG----------- 119 (383)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHH--HTSCCBCGGGCTTCEEEE-----------
T ss_pred EeeeecCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccc--cCCCCCCCCCCCcEEECC-----------
Confidence 44455689999999999999999999999999999999999962 368 467899999999999976
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh-----
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS----- 231 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s----- 231 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++ +.|||+....+ .| ...+|||||||++.++
T Consensus 120 --------~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~-----~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~ 184 (383)
T 2x0b_A 120 --------TELTLRYSTGTV-SGFLSQDIITVGGI-----TVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVT 184 (383)
T ss_dssp --------EEEEEECSSCEE-EEEEEEEEEEETTE-----EEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCC
T ss_pred --------cEEEEEcCCccE-EEEEEeeEEEEcCc-----eEE-EEEEEEEecCCcccccCCCceEeccCCCccccCCCC
Confidence 899999999985 59999999999986 888 99999999866 34 5688999999998765
Q ss_pred -----hHHhhhhhccCceEEEeecCC------CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEee
Q 040562 232 -----LISQMKTTIAGKFSYCLVQQS------STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLG 298 (427)
Q Consensus 232 -----l~~ql~~i~~~~Fs~~l~~~~------~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~ 298 (427)
+.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. .++|.|.|++|+|+++.+.
T Consensus 185 ~~~~~l~~q-g~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~-l~~~pv~~---~~~w~v~l~~i~v~~~~~~ 259 (383)
T 2x0b_A 185 PIFDNIISQ-GVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGN-FHYINLIK---TGVWQIQMKGVSVGSSTLL 259 (383)
T ss_dssp CHHHHHHTT-TCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEE-EEEEEBSS---TTSCEEEECEEEESSCCCB
T ss_pred cHHHHHHhC-CCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCc-eEEEEcCC---CceEEEEEeEEEeCCceEE
Confidence 3445 6678899999998862 49999999 4567776 99999986 6899999999999998753
Q ss_pred eeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEE
Q 040562 299 VISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFM 378 (427)
Q Consensus 299 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~ 378 (427)
. ..+..+||||||+++++|++++++|.+++.+.. ....+.++|+... .+|+|+|+|+|.+|+|++++|++
T Consensus 260 ~----~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~---~~g~~~v~C~~~~---~~P~i~f~~~g~~~~l~~~~yi~ 329 (383)
T 2x0b_A 260 C----EDGCLALVDTGASYISGSTSSIEKLMEALGAKK---RLFDYVVKCNEGP---TLPDISFHLGGKEYTLTSADYVF 329 (383)
T ss_dssp S----TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE---CSSCEEEEGGGTT---TCCCEEEEETTEEEEECHHHHBC
T ss_pred c----CCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc---cCCcEEEeccccc---cCceEEEEECCEEEEECHHHhEe
Confidence 2 347899999999999999999999999997654 2224567899754 68999999999999999999998
Q ss_pred EeCC--CeEEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 379 NISE--DLVCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 379 ~~~~--~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+..+ +..|++ |++. ++.||||++|||++|+|||++|+|||||+++
T Consensus 330 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 330 QESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp CCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred eccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 8653 458996 8754 2689999999999999999999999999974
No 3
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-59 Score=457.15 Aligned_cols=302 Identities=25% Similarity=0.408 Sum_probs=255.5
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
.+..+.+|+++|.||||+|++.|+|||||+++||+|..|....| ..++.|||++|+|++...
T Consensus 18 ~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~---------------- 79 (351)
T 1tzs_A 18 INYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPAC--KTHSRFQPSQSSTYSQPG---------------- 79 (351)
T ss_dssp GGGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGG--TTSCCBCGGGCTTCBCCS----------------
T ss_pred eecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccc--CCCCcCCcccCcceEECC----------------
Confidence 34578899999999999999999999999999999999985578 568999999999999865
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCC-C-CCCCceEeecCCCCCh------hHHh
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGK-F-NSKTDGIVGLGGGDAS------LISQ 235 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~s------l~~q 235 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+. | ....+||||||++.++ ++.+
T Consensus 80 ---~~~~i~Yg~Gs~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~ 150 (351)
T 1tzs_A 80 ---QSFSIQYGTGSL-SGIIGADQVSVEGL-----TVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDN 150 (351)
T ss_dssp ---CEEEEESSSCEE-EEEEEEEEEEETTE-----EEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCCHHHH
T ss_pred ---CEEEEEeCCCCe-EEEEEEeEEEECCe-----EECCeEEEEEEeccccccccCCCceEEecCCccccccCCCcHHHH
Confidence 899999999985 59999999999986 8999999999987663 4 5678999999998765 3333
Q ss_pred h---hhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCC
Q 040562 236 M---KTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306 (427)
Q Consensus 236 l---~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 306 (427)
| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. .++|.|.|++|+|+++.+.. ..+
T Consensus 151 l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~----~~~ 222 (351)
T 1tzs_A 151 MMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGS-LNWVPVTK---QAYWQIALDNIQVGGTVMFC----SEG 222 (351)
T ss_dssp HHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSC-CEEEECSE---ETTEEEEEEEEEETTEEEEC----TTC
T ss_pred HHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCc-eEEEecCC---CceEEEEeCEEEECCceEEc----CCC
Confidence 3 5578899999998863 39999999 4567776 99999986 67999999999999987643 346
Q ss_pred CcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--Ce
Q 040562 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DL 384 (427)
Q Consensus 307 ~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~ 384 (427)
..+||||||+++++|++++++|.+++.+.... ..+..+|+... .+|+|+|+|+|.+++|++++|+++..+ +.
T Consensus 223 ~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~---g~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~ 296 (351)
T 1tzs_A 223 CQAIVDTGTSLITGPSDKIKQLQNAIGAAPVD---GEYAVECANLN---VMPDVTFTINGVPYTLSPTAYTLLDFVDGMQ 296 (351)
T ss_dssp EEEEECTTCSSEEECHHHHHHHHHHHTCEECS---SSEEECGGGGG---GSCCEEEEETTEEEEECTTTSEECC-----C
T ss_pred ceEEeccCCcceeCCHHHHHHHHHHhCCcccC---CeEEEeCCCCc---cCCcEEEEECCEEEEECHHHhEeeccCCCCC
Confidence 88999999999999999999999999765432 24566899653 689999999999999999999987642 35
Q ss_pred EEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 385 VCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 385 ~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
.|++ |++. ++.||||++|||++|+|||++++|||||+++|.+
T Consensus 297 ~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~s 345 (351)
T 1tzs_A 297 FCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPWS 345 (351)
T ss_dssp CEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC---
T ss_pred eEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCccc
Confidence 7997 8764 2689999999999999999999999999999865
No 4
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=7.7e-60 Score=453.16 Aligned_cols=301 Identities=21% Similarity=0.365 Sum_probs=256.5
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.++.+..+.+|+++|.||||+|++.|+|||||+++||+|.+|....| ..++.|||++|+|++...
T Consensus 6 ~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~------------- 70 (323)
T 3cms_A 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC--KNHQRFDPRKSSTFQNLG------------- 70 (323)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHH--HTSCCBCGGGCTTCEEEE-------------
T ss_pred eeeEeccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccc--cCCCCCCCccCCCeEECC-------------
Confidence 34556678999999999999999999999999999999999954478 467899999999999986
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------h
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------L 232 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l 232 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+ .| ....+||||||++.++ +
T Consensus 71 ------~~~~i~Yg~Gs~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~ 138 (323)
T 3cms_A 71 ------KPLSIHYGTGSM-QGILGYDTVTVSNI-----VDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPV 138 (323)
T ss_dssp ------EEEEEEETTEEE-EEEEEEEEEEETTE-----EEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCH
T ss_pred ------cEEEEEeCCCCe-EEEEEEEEEEECCe-----EEeccEEEEEEecccccccccCCceEEecCcchhhccCCCCH
Confidence 899999999985 59999999999986 899999999998766 34 4578999999998654 3
Q ss_pred HHhh---hhhccCceEEEeecCCC-ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCC
Q 040562 233 ISQM---KTTIAGKFSYCLVQQSS-TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306 (427)
Q Consensus 233 ~~ql---~~i~~~~Fs~~l~~~~~-G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 306 (427)
+.+| +.+.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.. ..+
T Consensus 139 ~~~l~~q~~i~~~~FS~~l~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~----~~~ 210 (323)
T 3cms_A 139 FDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGS-LHWVPVTV---QQYWQFTVDSVTISGVVVAC----EGG 210 (323)
T ss_dssp HHHHHHTTCSSSSEEEEECCTTSSCEEEEESCCCGGGEEEE-EEEEECSS---BTTBEEEEEEEEETTEEEES----TTC
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCEEEEECCCChhhccCc-eEEEECcc---CCeEEEEEeeEEECCEEeec----CCC
Confidence 3333 55778999999998733 9999999 4567776 99999986 67999999999999988764 346
Q ss_pred CcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEE
Q 040562 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVC 386 (427)
Q Consensus 307 ~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C 386 (427)
..+||||||+++++|++++++|.+++.+.... ...+..+|+... .+|+|+|+|+|.+++|++++|+++ ++..|
T Consensus 211 ~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~--~g~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~--~~~~C 283 (323)
T 3cms_A 211 CQAILDTGTSKLVGPSSDILNIQQAIGATQNQ--YGEFDIDCDNLS---YMPTVVFEINGKMYPLTPSAYTSQ--DQGFC 283 (323)
T ss_dssp EEEEECTTCCSEEECHHHHHHHHHHHTCEEET--TTEEEECTTCTT---TSCCEEEEETTEEEEECHHHHEEE--ETTEE
T ss_pred cEEEEecCCccEeCCHHHHHHHHHHhCCeecC--CCcEEEECCCCc---cCceEEEEECCEEEEECHHHhccC--CCCEE
Confidence 78999999999999999999999998754321 114566798653 689999999999999999999998 34589
Q ss_pred EE-EEeC--CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 387 SV-FNAR--DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 387 ~~-i~~~--~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
++ |++. ++.||||++|||++|+|||++++|||||+++
T Consensus 284 ~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 284 TSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp EESEEEC---CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEeCCCCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 97 8875 3789999999999999999999999999975
No 5
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=1.4e-59 Score=464.06 Aligned_cols=323 Identities=24% Similarity=0.396 Sum_probs=262.8
Q ss_pred ecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCC--C--
Q 040562 85 IPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIK--D-- 159 (427)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~--~-- 159 (427)
+..+++|+++|.||||||+|.|+|||||+++||+|.+| .+|+||+.++|.++.|.. +.. .
T Consensus 16 d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c---------------~~Sst~~~v~C~s~~C~~~~~~~~~~c 80 (413)
T 3vla_A 16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN---------------YVSSTYRPVRCRTSQCSLSGSIACGDC 80 (413)
T ss_dssp CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS---------------CCCTTCEECBTTSHHHHHTTCCEEECC
T ss_pred cCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC---------------CCCCCcCccCCCcccccccccCCCccc
Confidence 34688999999999999999999999999999998854 378999999999999976 321 1
Q ss_pred ------CCCCCCCceeeeee-CCCCeEEEEEEEEEEEEcCCCCC----ceecCcEEEEeEeecCC-CCCCCCceEeecCC
Q 040562 160 ------SCSAEGNCRYSVSY-GDDSFSNGDLATETVTVGSTSGQ----AVALPEIVFGCGTKNGG-KFNSKTDGIVGLGG 227 (427)
Q Consensus 160 ------~c~~~~~~~~~~~Y-~~g~~~~G~~~~D~v~ig~~~~~----~~~~~~~~fg~~~~~~~-~~~~~~~GilGLg~ 227 (427)
.|. .+.|.|.+.| ++|+.+.|++++|+|+|+..++. .+.++++.|||+..... .+...++||||||+
T Consensus 81 ~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~~~dGIlGLg~ 159 (413)
T 3vla_A 81 FNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGR 159 (413)
T ss_dssp SSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCTTCCEEEECSS
T ss_pred ccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcccccccccccCC
Confidence 233 3569999999 48777779999999999854332 35889999999998632 12367899999999
Q ss_pred CCChhHHhhhhh--ccCceEEEeecCC--CceeeeCCCCc-------ccCCCeeeeccccCCC-----------CccEEE
Q 040562 228 GDASLISQMKTT--IAGKFSYCLVQQS--STKINFGTNGI-------VSGSGVVSTPLLAKNP-----------KTFYSL 285 (427)
Q Consensus 228 ~~~sl~~ql~~i--~~~~Fs~~l~~~~--~G~l~fGg~~~-------~~g~~~~~~p~~~~~~-----------~~~w~v 285 (427)
+.+++.+||... .+++||+||.+.. .|+|+||+.+. +.|+.+.|+|++.++. ..+|.|
T Consensus 160 ~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~y~V 239 (413)
T 3vla_A 160 TRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFI 239 (413)
T ss_dssp SSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCSCEE
T ss_pred CCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCceEEE
Confidence 999999998753 2699999999842 29999999322 4454499999998642 279999
Q ss_pred EeeEEEecceEeeeeccC-----CCCCcEEEccCCccccccHHHHHHHHHHHHhhhc---cCCCc--CCCcceeccCCC-
Q 040562 286 TLDAISVGDQRLGVISGS-----NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIA---AQPVE--GPYDLCYSISSR- 354 (427)
Q Consensus 286 ~l~~i~v~~~~~~~~~~~-----~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~---~~~~~--~~~~~C~~~~~~- 354 (427)
+|++|+||++.+..+... .+++++||||||++++||+++|++|.++|.+++. ..... ..++.|+.....
T Consensus 240 ~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 319 (413)
T 3vla_A 240 GVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNIL 319 (413)
T ss_dssp CCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCSCEEECTTCC
T ss_pred EEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCcceeccCCcc
Confidence 999999999998875322 1457899999999999999999999999998764 12111 456789987532
Q ss_pred -----CccCeEEEEEeC--cEEEecCCceEEEeCCCeEEEEEEeCC----CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 355 -----PRFPEVTIHFRD--ADVKLSTSNVFMNISEDLVCSVFNARD----DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 355 -----~~~P~i~~~f~g--~~~~l~~~~y~~~~~~~~~C~~i~~~~----~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
..+|+|+|+|+| ++|+|++++|+++..++..|++|+..+ ..||||+.|||++|+|||++++|||||++.
T Consensus 320 ~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~~ 399 (413)
T 3vla_A 320 STRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTL 399 (413)
T ss_dssp EETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEETTTTEEEEEEEG
T ss_pred ccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEECCCCEEEEEEec
Confidence 268999999998 899999999999877778999976543 579999999999999999999999999863
No 6
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=1.4e-58 Score=444.67 Aligned_cols=302 Identities=22% Similarity=0.349 Sum_probs=256.8
Q ss_pred cccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 79 VSQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 79 ~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
.+.......+.+|+++|+||||+|++.|+|||||+++||+|.+|. .| .+.++.|||++|+|++...
T Consensus 5 ~v~~~~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~--~c-~~~~~~y~~~~SsT~~~~~----------- 70 (325)
T 2apr_A 5 TVPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT--NC-GSGQTKYDPNQSSTYQADG----------- 70 (325)
T ss_dssp EEEEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCS--SC-CTTSCCBCGGGCTTCEEEE-----------
T ss_pred ceeeeecCCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCc--hH-hcCCCCCCcccCCCeeeCC-----------
Confidence 445566788999999999999999999999999999999999998 67 5788999999999999865
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC-CCCCceEeecCCCCCh------
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s------ 231 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+....+.| ....+||||||++.++
T Consensus 71 --------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~-----~v~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~ 137 (325)
T 2apr_A 71 --------RTWSISYGDGSSASGILAKDNVNLGGL-----LIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVK 137 (325)
T ss_dssp --------EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCC
T ss_pred --------CEEEEEECCCCCEEEEEEEEEEEECCE-----EECcEEEEEEeccCcccccCCCceEEEeCCcccccccCCC
Confidence 899999999997779999999999986 89999999999877655 4558999999997653
Q ss_pred -hHHhh---hhhccCceEEEeecC---CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeecc
Q 040562 232 -LISQM---KTTIAGKFSYCLVQQ---SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISG 302 (427)
Q Consensus 232 -l~~ql---~~i~~~~Fs~~l~~~---~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~ 302 (427)
+++|| +.+.+++||+||.+. ..|+|+||| ++++.|+ +.|+|+... .++|.|.+++|+|++ .+.
T Consensus 138 ~~~~~l~~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~--~~~~~v~l~~i~vg~-~~~---- 209 (325)
T 2apr_A 138 TPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGS-LTTVPIDNS--RGWWGITVDRATVGT-STV---- 209 (325)
T ss_dssp CHHHHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSC-CEEEECBCT--TSSCEEEECEEEETT-EEE----
T ss_pred CHHHHHHhcCCCCCceEEEEecCCCCCCCCEEEEccCCchhccCc-eEEEEccCC--CCEEEEEEeEEEECC-Eec----
Confidence 44444 446789999999653 239999999 4577776 999999753 679999999999999 332
Q ss_pred CCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC
Q 040562 303 SNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE 382 (427)
Q Consensus 303 ~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~ 382 (427)
.....+||||||++++||+++|+++++++.+.+... ..+..+|+. ..+|+|+|+|+|.+++||+++|+++..
T Consensus 210 -~~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~--g~~~~~C~~----~~~p~i~f~f~g~~~~ip~~~~~~~~~- 281 (325)
T 2apr_A 210 -ASSFDGILDTGTTLLILPNNIAASVARAYGASDNGD--GTYTISCDT----SAFKPLVFSINGASFQVSPDSLVFEEF- 281 (325)
T ss_dssp -ECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSS--SCEEECSCG----GGCCCEEEEETTEEEEECGGGGEEEEE-
T ss_pred -CCCceEEEecCCccEECCHHHHHHHHHHHhcccCCC--CeEEEECCC----CCCCcEEEEECCEEEEECHHHEEEcCC-
Confidence 236799999999999999999999999998765432 245667984 148999999999899999999998765
Q ss_pred CeEEEE-EEeC-CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 383 DLVCSV-FNAR-DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 383 ~~~C~~-i~~~-~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+..|++ |++. ++.||||++|||++|+|||++++|||||+++
T Consensus 282 ~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 282 QGQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp TTEEEESEEEESSSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CCeEEEEEEcCCCCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 568998 7765 3789999999999999999999999999975
No 7
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=2.7e-59 Score=450.31 Aligned_cols=301 Identities=24% Similarity=0.370 Sum_probs=255.3
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
....+.+|+++|+||||+|++.|+|||||+++||+|.+|. .|..+.++.|||++|+|++.++|
T Consensus 10 ~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~--~~~~~~~~~y~~~~SsT~~~~~~--------------- 72 (329)
T 3c9x_A 10 SDSADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETP--KSSATGHAIYTPSKSSTSKKVSG--------------- 72 (329)
T ss_dssp SSTTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC--HHHHTTSCCBCGGGCTTCEECTT---------------
T ss_pred CCCCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCC--ccccCCCCcCCcccCcCceEcCC---------------
Confidence 4567899999999999999999999999999999999998 77667889999999999998642
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh---------h
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS---------L 232 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s---------l 232 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+....+.+ ....+||||||++..+ +
T Consensus 73 ---~~~~i~Yg~Gs~~~G~~~~D~v~ig~~-----~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~ 144 (329)
T 3c9x_A 73 ---ASWSISYGDGSSSSGDVYTDKVTIGGF-----SVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTW 144 (329)
T ss_dssp ---CBEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCH
T ss_pred ---CeEEEEeCCCCcEEEEEEEEEEEECCE-----EEcceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCH
Confidence 899999999997779999999999986 89999999999876644 3678999999997654 4
Q ss_pred HHhhh-hhccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcE
Q 040562 233 ISQMK-TTIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309 (427)
Q Consensus 233 ~~ql~-~i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 309 (427)
+++|. .+.+++||+||.+...|+|+||| .+++.|+ +.|+|+... .++|.|.|++|+|+++.+.. ....+
T Consensus 145 ~~~l~~~i~~~~FS~~l~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~--~~~~~v~l~~i~v~~~~~~~-----~~~~a 216 (329)
T 3c9x_A 145 FSNAASSLAEPLFTADLRHGQNGSYNFGYIDTSVAKGP-VAYTPVDNS--QGFWEFTASGYSVGGGKLNR-----NSIDG 216 (329)
T ss_dssp HHHHHTTSSSSEEEEECCSSSCEEEEESSCCGGGCSSC-EEEEECBCT--TSSCEEEECCEEETTCCCCS-----CCEEE
T ss_pred HHHHHHhcCCCEEEEEecCCCCcEEEEeCcChhhcccc-eEEEEccCC--CceEEEEEeeEEECCEeccC-----CCceE
Confidence 44543 25689999999886559999999 4567776 999999843 67999999999999987642 36789
Q ss_pred EEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--CeEEE
Q 040562 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DLVCS 387 (427)
Q Consensus 310 iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~~C~ 387 (427)
||||||++++||++++++|++++.++........+..+|+ ..+|+|+|+|+|.+++||+++|++...+ ...|+
T Consensus 217 iiDSGTt~~~lp~~~~~~i~~~i~~a~~~~~~~~~~~~C~-----~~~P~i~f~f~g~~~~ip~~~~~~~~~~~~~~~C~ 291 (329)
T 3c9x_A 217 IADTGTTLLLLDDNVVDAYYANVQSAQYDNQQEGVVFDCD-----EDLPSFSFGVGSSTITIPGDLLNLTPLEEGSSTCF 291 (329)
T ss_dssp EECTTCCSEEECHHHHHHHHTTCTTCEEETTTTEEEEETT-----CCCCCEEEEETTEEEEECGGGGEEEESSTTCSEEE
T ss_pred EEECCCCcEeCCHHHHHHHHHhCCCcEEcCCCCEEEEECC-----CCCCcEEEEECCEEEEECHHHeeeeccCCCCCeEE
Confidence 9999999999999999999998855432222223556798 3689999999999999999999987633 36899
Q ss_pred E-EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 388 V-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 388 ~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
+ |++.+ +.||||++|||++|+|||++++|||||++
T Consensus 292 ~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 292 GGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp ESEEECTTTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred EEEEcCCCCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 8 88754 68999999999999999999999999985
No 8
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=1.9e-59 Score=450.28 Aligned_cols=300 Identities=24% Similarity=0.411 Sum_probs=255.1
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
++.++.+.+|+++|+||||||+++|++||||+++||+|..|....| ..++.|||++|+|++...
T Consensus 4 ~l~n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~-------------- 67 (320)
T 4aa9_A 4 PLTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVC--KNHHRFDPRKSSTFRNLG-------------- 67 (320)
T ss_dssp ----CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHH--HTSCCBCGGGCTTCEEEE--------------
T ss_pred cceeccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCcccc--CCCCCCCCCCCcCeEcCC--------------
Confidence 4456678999999999999999999999999999999999984456 567999999999999986
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------hH
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------LI 233 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l~ 233 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+ .+ ....+||||||++..+ ++
T Consensus 68 -----~~~~i~Yg~gs~-~G~~~~D~v~ig~~-----~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~ 136 (320)
T 4aa9_A 68 -----KPLSIHYGTGSM-EGFLGYDTVTVSNI-----VDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVF 136 (320)
T ss_dssp -----EEEEEEETTEEE-EEEEEEEEEEETTE-----EEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHH
T ss_pred -----cEEEEEECCcEE-EEEEEEEEEEECCE-----eecCeEEEEEEEcccccccccCcccEEecCcccccccCCCCHH
Confidence 899999999985 69999999999987 999999999998876 34 5678999999987543 33
Q ss_pred Hhh---hhhccCceEEEeecC-CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCC
Q 040562 234 SQM---KTTIAGKFSYCLVQQ-SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGG 307 (427)
Q Consensus 234 ~ql---~~i~~~~Fs~~l~~~-~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 307 (427)
.+| +.+.+++||+||.+. ..|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.. ....
T Consensus 137 ~~l~~~g~i~~~~Fs~~l~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~v~~~~~~~----~~~~ 208 (320)
T 4aa9_A 137 DNMMDRHLVARDLFSVYMDRNGQGSMLTLGAIDPSYYTGS-LHWVPVTL---QQYWQFTVDSVTINGVAVAC----VGGC 208 (320)
T ss_dssp HHHHHTTCSSSSEEEEECCSSSSCCEEEETCCCGGGEEEE-EEEEECSS---BTTBEEEECEEEETTEEEES----TTCE
T ss_pred HHHHhCCCCCCceEEEEeCCCCCCeEEEEcccCHHHccCc-eEEEEccc---CCceEEEEeEEEECCEEecc----CCCc
Confidence 333 557889999999986 349999999 5567776 99999986 78999999999999988764 3467
Q ss_pred cEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEE
Q 040562 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCS 387 (427)
Q Consensus 308 ~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~ 387 (427)
.++|||||+++++|++++++|.+++.+.... ...+..+|+... .+|+|+|+|+|.+++|++++|+.+ ++..|+
T Consensus 209 ~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~--~g~~~~~C~~~~---~~p~i~f~f~g~~~~l~~~~y~~~--~~~~C~ 281 (320)
T 4aa9_A 209 QAILDTGTSVLFGPSSDILKIQMAIGATENR--YGEFDVNCGNLR---SMPTVVFEINGRDYPLSPSAYTSK--DQGFCT 281 (320)
T ss_dssp EEEECTTCSSEEEEHHHHHHHHHHTTCEECT--TSCEEECGGGGG---GCCCEEEEETTEEEEECHHHHEEE--ETTEEE
T ss_pred EEEEECCCCcEECCHHHHHHHHHHhCCcccC--CCcEEEeCCCCC---cCceEEEEECCEEEEECHHHhccC--CCCeEE
Confidence 8999999999999999999999998654321 124667899653 689999999999999999999977 345899
Q ss_pred E-EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 388 V-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 388 ~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+ |++.. +.||||++|||++|+|||++++|||||+++
T Consensus 282 ~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 282 SGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp ESEEEETTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEcCCCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 7 87643 579999999999999999999999999975
No 9
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=4.6e-59 Score=448.75 Aligned_cols=300 Identities=25% Similarity=0.368 Sum_probs=253.2
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
....+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|.. .++.|||++|+|++.+.|
T Consensus 10 ~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~--~~~~-~~~~y~~~~SsT~~~~~~--------------- 71 (329)
T 1oew_A 10 IDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT--ASEV-XQTIYTPSKSTTAKLLSG--------------- 71 (329)
T ss_dssp SSTTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC--GGGC--CCCBCGGGCTTCEEEEE---------------
T ss_pred cCCCCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCC--cccc-ccCccCCccCccceecCC---------------
Confidence 4457889999999999999999999999999999999998 6755 788999999999999642
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh---------h
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS---------L 232 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s---------l 232 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+....+.+ ....+||||||++.++ +
T Consensus 72 ---~~~~i~Yg~Gs~~~G~~~~D~v~~g~~-----~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~ 143 (329)
T 1oew_A 72 ---ATWSISYGDGSSSSGDVYTDTVSVGGL-----TVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTF 143 (329)
T ss_dssp ---EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCH
T ss_pred ---CeEEEEeCCCCcEEEEEEEEEEEECCE-----EEeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCH
Confidence 899999999997779999999999986 89999999999877644 3678999999997654 4
Q ss_pred HHhhhh-hccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcE
Q 040562 233 ISQMKT-TIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309 (427)
Q Consensus 233 ~~ql~~-i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 309 (427)
+++|.. +.+++||+||.+...|+|+||| .+++.|+ +.|+|+... .++|.|.+++|+|+++.+.. ....+
T Consensus 144 ~~~l~~~i~~~~FS~~L~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~--~~~~~v~l~~i~v~~~~~~~-----~~~~a 215 (329)
T 1oew_A 144 FDNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGS-ITYTAVSTK--QGFWEWTSTGYAVGSGTFKS-----TSIDG 215 (329)
T ss_dssp HHHHTTTSSSSEEEEECCSSSCEEEEESCCCTTSSSSC-CEEEECBCT--TSSCEEEEEEEEETTSCCEE-----EEEEE
T ss_pred HHHHHHhccCcEEEEEccCCCCeEEEEeccChHhcccc-eEEEEccCC--CceEEEEEeeEEECCeeccC-----CCceE
Confidence 455533 5689999999886559999999 5577777 999999843 67999999999999987653 25789
Q ss_pred EEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--CeEEE
Q 040562 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DLVCS 387 (427)
Q Consensus 310 iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~~C~ 387 (427)
||||||+++++|++++++|++++.++........+..+|+ ..+|+|+|+|+|.+++||+++|+++..+ ...|+
T Consensus 216 iiDSGTt~~~lP~~~~~~l~~~i~~a~~~~~~g~~~~~C~-----~~~P~i~f~fgg~~~~ip~~~~~~~~~~~~~~~C~ 290 (329)
T 1oew_A 216 IADTGTTLLYLPATVVSAYWAQVSGAKSSSSVGGYVFPCS-----ATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCF 290 (329)
T ss_dssp EECTTCCSEEECHHHHHHHHTTSTTCEEETTTTEEEEETT-----CCCCCEEEEETTEEEEECHHHHEEEESSTTCSEEE
T ss_pred EEeCCCCCEECCHHHHHHHHHhCCCcEEcCCCCEEEEECC-----CCCCcEEEEECCEEEEECHHHeeeeecCCCCCeEE
Confidence 9999999999999999999998854432222224556798 2689999999999999999999987632 46899
Q ss_pred E-EEeCC--CcceechhhhcceEEEEeC-CCCEEEEeeC
Q 040562 388 V-FNARD--DIPLYGNIMQTNFLIGYDI-EGRTVSFKPT 422 (427)
Q Consensus 388 ~-i~~~~--~~~ilG~~fl~~~y~vfD~-~~~riGfa~~ 422 (427)
+ |++.+ +.||||++|||++|+|||+ +++|||||++
T Consensus 291 ~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 291 GGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp ESEEESTTTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred EEEEeCCCCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 8 88654 6899999999999999999 9999999985
No 10
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=1e-58 Score=452.26 Aligned_cols=309 Identities=21% Similarity=0.356 Sum_probs=260.2
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC-CCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP-PSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~-~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
++.+..+.+|+++|.||||+|++.|+|||||+++||+|.+|. ...| ..++.|||++|+|++...
T Consensus 11 ~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C--~~~~~y~~~~SsT~~~~~------------- 75 (361)
T 1mpp_A 11 GLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGC--VGKRFFDPSSSSTFKETD------------- 75 (361)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTC--CSSCCBCGGGCTTCEEEE-------------
T ss_pred EeecCCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccC--CCCCcCCCccCCceEecC-------------
Confidence 344567899999999999999999999999999999999997 5678 457899999999999986
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC------CC-CCCCceEeecCCCCChhH
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG------KF-NSKTDGIVGLGGGDASLI 233 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~------~~-~~~~~GilGLg~~~~sl~ 233 (427)
|.|.+.|++|++ .|.+++|+|+|++. .++++.|||+....+ .| ....+||||||++.+++.
T Consensus 76 ------~~~~i~Yg~Gs~-~G~~~~D~v~~g~~-----~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 143 (361)
T 1mpp_A 76 ------YNLNITYGTGGA-NGIYFRDSITVGGA-----TVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAM 143 (361)
T ss_dssp ------EEEEEECSSCEE-EEEEEEEEEEETTE-----EEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHH
T ss_pred ------CeEEEEECCceE-EEEEEEEEEEECCE-----EEeceEEEEEEeccCccccccccccCCCCCEEEeCCcccccc
Confidence 899999999995 69999999999986 899999999998765 34 567899999999765432
Q ss_pred ------------Hhh---hhhccCceEEEeecCC-CceeeeCC--CCcccCCCeeeeccccCCC-CccEEEEeeEEEecc
Q 040562 234 ------------SQM---KTTIAGKFSYCLVQQS-STKINFGT--NGIVSGSGVVSTPLLAKNP-KTFYSLTLDAISVGD 294 (427)
Q Consensus 234 ------------~ql---~~i~~~~Fs~~l~~~~-~G~l~fGg--~~~~~g~~~~~~p~~~~~~-~~~w~v~l~~i~v~~ 294 (427)
.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+..... ..+|.|.|++|+|++
T Consensus 144 ~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~~~~~~~~~v~l~~i~v~~ 222 (361)
T 1mpp_A 144 EAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGVNNTLLGGD-IQYTDVLKSRGGYFFWDAPVTGVKIDG 222 (361)
T ss_dssp HHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCSSSEEEEEESSCCGGGBSSC-CEEEECEEETTEEEEEEEEEEEEEETT
T ss_pred cccccccCCCHHHHHHHcCCCCCcEEEEEecCCCCCcEEEEecCChhhcCCc-eEEEEcccCCCceeEEEEEEeEEEECC
Confidence 233 4567899999999863 39999999 4567776 99999987421 128999999999999
Q ss_pred eEeeeeccCCCCCcEE-EccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCcc-CeEEEEE--e-----
Q 040562 295 QRLGVISGSNPGGDIV-IDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRF-PEVTIHF--R----- 365 (427)
Q Consensus 295 ~~~~~~~~~~~~~~~i-iDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~-P~i~~~f--~----- 365 (427)
+.+... ....+| |||||++++||++++++|++++.+....... .+..+|+... .+ |+|+|+| +
T Consensus 223 ~~~~~~----~~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~~~~~g-~~~~~C~~~~---~~~p~i~f~f~~g~~~~~ 294 (361)
T 1mpp_A 223 SDAVSF----DGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDATESQQ-GYTVPCSKYQ---DSKTTFSLVLQKSGSSSD 294 (361)
T ss_dssp EEEEEE----EEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCEEETT-EEEEEHHHHT---TCCCEEEEEEECTTCSSC
T ss_pred eeeccC----CCCEEEEECCCCCceeCCHHHHHHHHHHhCCcccCCCC-cEEEECCCcc---cCCCcEEEEEEcCCcCCC
Confidence 887532 257899 9999999999999999999999775432111 4567899653 67 9999999 7
Q ss_pred CcEEEecCCceEEEeC-CCeEEEE-EEeC-CCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 366 DADVKLSTSNVFMNIS-EDLVCSV-FNAR-DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 366 g~~~~l~~~~y~~~~~-~~~~C~~-i~~~-~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
|.+++|++++|+++.. ++..|+. |++. ++.||||++|||++|+|||++++|||||+++|+.
T Consensus 295 g~~~~i~~~~y~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~~~~ 358 (361)
T 1mpp_A 295 TIDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASGY 358 (361)
T ss_dssp EEEEEEEGGGGEEECSSSSCEEEESEEEESSSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTTT
T ss_pred CeEEEECHHHhEEecCCCCCeeEEEEEeCCCCCEEEChHHhccEEEEEECCCCEEEEEEcccCC
Confidence 7999999999999875 3468986 8874 4789999999999999999999999999999975
No 11
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=4.6e-59 Score=448.09 Aligned_cols=297 Identities=24% Similarity=0.436 Sum_probs=254.9
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCC
Q 040562 83 DIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCS 162 (427)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (427)
+.+..+.+|+++|.||||||++.|+|||||+++||+|..|....| ..++.|||++|+|++...
T Consensus 6 l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~--------------- 68 (324)
T 1am5_A 6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQAC--SNHNKFKPRQSSTYVETG--------------- 68 (324)
T ss_dssp EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHH--HTSCCBCGGGCTTCEEEE---------------
T ss_pred eecCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccc--cCCCcCCCccCCCeEeCC---------------
Confidence 445678999999999999999999999999999999999974457 467899999999999976
Q ss_pred CCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------hHH
Q 040562 163 AEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------LIS 234 (427)
Q Consensus 163 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l~~ 234 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+ .| ....+||||||++..+ ++.
T Consensus 69 ----~~~~i~Yg~Gs~-~G~~~~D~v~~g~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~ 138 (324)
T 1am5_A 69 ----KTVDLTYGTGGM-RGILGQDTVSVGGG-----SDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFD 138 (324)
T ss_dssp ----EEEEEECSSCEE-EEEEEEEEEESSSS-----CEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHH
T ss_pred ----cEEEEEECCCCe-EEEEEECceeECCc-----EEcccEEEEEEecccccccCCCCceEEecCCccccccCCCchHH
Confidence 899999999987 59999999999987 899999999999866 34 5678999999998664 333
Q ss_pred hh---hhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCC
Q 040562 235 QM---KTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGG 307 (427)
Q Consensus 235 ql---~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~ 307 (427)
+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.. . +.
T Consensus 139 ~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~----~-~~ 209 (324)
T 1am5_A 139 NMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGS-IHWIPVTA---EKYWQVALDGITVNGQTAAC----E-GC 209 (324)
T ss_dssp HHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSC-CEEEEEEE---ETTEEEEECEEEETTEECCC----C-CE
T ss_pred hHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCc-eEEEecCC---CcEEEEEEeEEEECCceeec----c-Cc
Confidence 33 4577899999999864 39999999 4567776 99999986 67999999999999987543 2 28
Q ss_pred cEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEE
Q 040562 308 DIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCS 387 (427)
Q Consensus 308 ~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~ 387 (427)
.+||||||+++++|++++++|.+++.+. . ....+..+|+... .+|+|+|+|+|.+++|++++|+++. +..|+
T Consensus 210 ~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~--~~g~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~--~~~C~ 281 (324)
T 1am5_A 210 QAIVDTGTSKIVAPVSALANIMKDIGAS-E--NQGEMMGNCASVQ---SLPDITFTINGVKQPLPPSAYIEGD--QAFCT 281 (324)
T ss_dssp EEEECTTCSSEEECTTTHHHHHHHHTCE-E--CCCCEECCTTSSS---SSCCEEEEETTEEEEECHHHHEEES--SSCEE
T ss_pred eEEEecCCccEECCHHHHHHHHHHhCCc-c--cCCcEEEeCCCcc---cCCcEEEEECCEEEEECHHHhcccC--CCeEE
Confidence 8999999999999999999999999765 2 1224567898653 6899999999999999999999986 55799
Q ss_pred E-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 388 V-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 388 ~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+ |++. ++.||||++|||++|+|||++++|||||+++
T Consensus 282 ~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 282 SGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp ECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred EEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 6 8764 2579999999999999999999999999975
No 12
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=8.5e-59 Score=447.96 Aligned_cols=298 Identities=23% Similarity=0.394 Sum_probs=254.6
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCC--CCCC-------CCCCCCCCCCCCCCCCCcceeecCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQ--PCPP-------SQCYKQDNPLFDPQRSSTYKYLSCSS 150 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~--~c~~-------~~C~~~~~~~y~p~~Sst~~~~~c~~ 150 (427)
+..++...+.+|+++|.||||+|++.|+|||||+++||+|. +|.. ..| ..++.|||++|+|++...
T Consensus 3 ~~~~l~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C--~~~~~y~~~~SsT~~~~~--- 77 (334)
T 1j71_A 3 VPTTLINEGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFC--KQEGTFDPSSSSSAQNLN--- 77 (334)
T ss_dssp EEEEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGG--GSSCCBCGGGCTTCEEEE---
T ss_pred eeEEEecCCcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccc--cCCCcCCcccCCCcccCC---
Confidence 34556667899999999999999999999999999999876 6762 246 467899999999999986
Q ss_pred CCCCCCCCCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCC
Q 040562 151 SQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDA 230 (427)
Q Consensus 151 ~~C~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~ 230 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+.... ..+||||||++..
T Consensus 78 ----------------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~-----~~~~~~fg~~~~~~-----~~~GilGLg~~~~ 131 (334)
T 1j71_A 78 ----------------QDFSIEYGDLTSSQGSFYKDTVGFGGI-----SIKNQQFADVTTTS-----VDQGIMGIGFTAD 131 (334)
T ss_dssp ----------------EEEEEEBTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEES-----SSSCEEECSCGGG
T ss_pred ----------------CceEEEECCCCEEEEEEEEEEEEECCE-----EEccEEEEEEEecC-----CCccEEEEcCCcc
Confidence 899999999998779999999999986 89999999999863 5789999999764
Q ss_pred --------hhHHhh---hhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecce
Q 040562 231 --------SLISQM---KTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQ 295 (427)
Q Consensus 231 --------sl~~ql---~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~ 295 (427)
+++.|| +.+.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++
T Consensus 132 ~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~g~ 207 (334)
T 1j71_A 132 EAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGT-LTALPVTS---SVELRVHLGSINFDGT 207 (334)
T ss_dssp SSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEE-EEEEECCC---SSSCEEEEEEEEETTE
T ss_pred cCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCc-eEEEEccC---CCeEEEEEeEEEECCE
Confidence 344444 45678999999987533 9999999 5678776 99999986 5699999999999999
Q ss_pred EeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCC-cceeccCCCCccCeEEEEE-eCcEEEecC
Q 040562 296 RLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPY-DLCYSISSRPRFPEVTIHF-RDADVKLST 373 (427)
Q Consensus 296 ~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~-~~C~~~~~~~~~P~i~~~f-~g~~~~l~~ 373 (427)
.+.. ...+||||||+++++|++++++|++++.+.... ....+. .+|+ .+|+|+|+| +|.+++|++
T Consensus 208 ~~~~------~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~~-~~~~~~~~~C~------~~p~i~f~f~~g~~~~i~~ 274 (334)
T 1j71_A 208 SVST------NADVVLDSGTTITYFSQSTADKFARIVGATWDS-RNEIYRLPSCD------LSGDAVFNFDQGVKITVPL 274 (334)
T ss_dssp EEEE------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEET-TTTEEECSSSC------CCSEEEEEESTTCEEEEEG
T ss_pred eccC------CccEEEeCCCCcEecCHHHHHHHHHHcCCcccC-CCceEEEEcCC------CCCceEEEEcCCcEEEECH
Confidence 8865 568999999999999999999999999876631 111344 7897 479999999 589999999
Q ss_pred CceEEEeCCCeEEEE-EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 374 SNVFMNISEDLVCSV-FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 374 ~~y~~~~~~~~~C~~-i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
++|+++..++..|++ |++. +.||||++|||++|+|||++++|||||+++|.+
T Consensus 275 ~~y~~~~~~~~~C~~~i~~~-~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~ 327 (334)
T 1j71_A 275 SELILKDSDSSICYFGISRN-DANILGDNFLRRAYIVYDLDDKTISLAQVKYTS 327 (334)
T ss_dssp GGGEEECSSSSCEEESEEEC-TTCEECHHHHTTEEEEEETTTTEEEEEEECCCS
T ss_pred HHheeecCCCCeeEEEEeEC-CCcEEChHhhccEEEEEECCCCEEEEEecCCCC
Confidence 999998765556998 7765 579999999999999999999999999999975
No 13
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=8.3e-59 Score=447.25 Aligned_cols=298 Identities=22% Similarity=0.412 Sum_probs=253.0
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
++.+..+.+|+++|+||||+|++.|+|||||+++||+|.+|....| ..++.|||++|+|++...
T Consensus 6 ~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~-------------- 69 (329)
T 1dpj_A 6 PLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLAC--FLHSKYDHEASSSYKANG-------------- 69 (329)
T ss_dssp ECEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHH--HTSCCBCGGGCTTCEEEE--------------
T ss_pred eeeecCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCccc--CCcCcCCcccCcCeEECC--------------
Confidence 3445678999999999999999999999999999999999983347 467899999999999876
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh--------
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS-------- 231 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s-------- 231 (427)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+ .| ....+||||||++.++
T Consensus 70 -----~~~~i~Yg~Gs-~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~ 138 (329)
T 1dpj_A 70 -----TEFAIQYGTGS-LEGYISQDTLSIGDL-----TIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPF 138 (329)
T ss_dssp -----EEEEEEETTEE-EEEEEEEEEEEETTE-----EEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHH
T ss_pred -----cEEEEEECCce-EEEEEEEEEEEECCe-----EECCeEEEEEEecCccccccCCcceEEEeCCchhhccCCCCHH
Confidence 89999999995 459999999999986 899999999998765 34 4678999999998765
Q ss_pred --hHHhhhhhccCceEEEeecCC-----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeecc
Q 040562 232 --LISQMKTTIAGKFSYCLVQQS-----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISG 302 (427)
Q Consensus 232 --l~~ql~~i~~~~Fs~~l~~~~-----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~ 302 (427)
+.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+..
T Consensus 139 ~~l~~q-g~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~--- 210 (329)
T 1dpj_A 139 YNAIQQ-DLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGD-ITWLPVRR---KAYWEVKFEGIGLGDEYAEL--- 210 (329)
T ss_dssp HHHHHT-TCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEE-EEEEECSS---BTTBEEEEEEEEETTEEEEC---
T ss_pred HHHHhc-CCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCc-eEEEEcCC---CceEEEEeeeEEECCeEecC---
Confidence 3344 5577899999997652 39999999 4567776 99999986 67999999999999987753
Q ss_pred CCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC
Q 040562 303 SNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE 382 (427)
Q Consensus 303 ~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~ 382 (427)
.+..+||||||+++++|++++++|.+++.+.. .....+..+|+... .+|+|+|+|+|.+++|++++|+++..
T Consensus 211 --~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~--~~~g~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~~- 282 (329)
T 1dpj_A 211 --ESHGAAIDTGTSLITLPSGLAEMINAEIGAKK--GWTGQYTLDCNTRD---NLPDLIFNFNGYNFTIGPYDYTLEVS- 282 (329)
T ss_dssp --SSCEEEECTTCSCEEECHHHHHHHHHHHTCEE--CTTSSEEECGGGGG---GCCCEEEEETTEEEEECTTTSEEEET-
T ss_pred --CCccEEeeCCCCcEECCHHHHHHHHHHhCCcc--CCCCeEEEECCCCC---cCCcEEEEECCEEEEECHHHhEecCC-
Confidence 36789999999999999999999999987541 11114556798653 68999999999999999999999865
Q ss_pred CeEEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 383 DLVCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 383 ~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
..|++ |++. ++.||||++|||++|+|||++++|||||+++
T Consensus 283 -~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 283 -GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp -TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred -CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 47996 8754 2679999999999999999999999999975
No 14
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=2.4e-58 Score=446.45 Aligned_cols=299 Identities=19% Similarity=0.385 Sum_probs=253.8
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCC--CCC-------CCCCCCCCCCCCCCCCCCcceeecCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQ--PCP-------PSQCYKQDNPLFDPQRSSTYKYLSCSS 150 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~--~c~-------~~~C~~~~~~~y~p~~Sst~~~~~c~~ 150 (427)
+..++...+.+|+++|.||||+|++.|+|||||+++||++. +|. ...| ..++.|||++|+|++...
T Consensus 3 v~~~l~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C--~~~~~y~~~~SsT~~~~~--- 77 (342)
T 2qzx_A 3 VAVTLHNEAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFC--KSAGSYSPASSRTSQNLN--- 77 (342)
T ss_dssp EEEEEEECSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGG--GTTCCBCGGGCTTCEEEE---
T ss_pred eeEEEecCCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccc--cCCCcCCcccCCCcccCC---
Confidence 34455667899999999999999999999999999999866 675 1246 467899999999999986
Q ss_pred CCCCCCCCCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCC
Q 040562 151 SQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDA 230 (427)
Q Consensus 151 ~~C~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~ 230 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+.... ..+||||||++..
T Consensus 78 ----------------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~-----~v~~~~fg~~~~~~-----~~~GilGLg~~~~ 131 (342)
T 2qzx_A 78 ----------------TRFDIKYGDGSYAKGKLYKDTVGIGGV-----SVRDQLFANVWSTS-----ARKGILGIGFQSG 131 (342)
T ss_dssp ----------------EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEEC-----SSSCEEECSCGGG
T ss_pred ----------------CcEEEEeCCCCeEEEEEEEEEEEECCE-----EecceEEEEEEecC-----CCcCEEEEccccc
Confidence 899999999998789999999999986 89999999999863 5789999999754
Q ss_pred --------hhHHhh---hhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecce
Q 040562 231 --------SLISQM---KTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQ 295 (427)
Q Consensus 231 --------sl~~ql---~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~ 295 (427)
+++.|| +.+.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. ..+|.|.|++|+|+++
T Consensus 132 ~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~g~ 207 (342)
T 2qzx_A 132 EATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGS-LVDLPITS---EKKLTVGLRSVNVRGR 207 (342)
T ss_dssp CSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSC-CEEEECCC---SSSCEEEEEEEEETTE
T ss_pred cCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecc-eEEEeccC---CceEEEEEeEEEECCE
Confidence 344444 45678999999987533 9999999 5678887 99999986 5689999999999999
Q ss_pred EeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCC-Cc-CCCcceeccCCCCccCeEEEEE-eCcEEEec
Q 040562 296 RLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQP-VE-GPYDLCYSISSRPRFPEVTIHF-RDADVKLS 372 (427)
Q Consensus 296 ~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~-~~-~~~~~C~~~~~~~~~P~i~~~f-~g~~~~l~ 372 (427)
.+.. ...+||||||++++||++++++|++++.+...... .. .+..+|+ .+|+|+|+| +|.+++|+
T Consensus 208 ~~~~------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~------~~p~i~f~f~~g~~~~i~ 275 (342)
T 2qzx_A 208 NVDA------NTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDSAGNKVYVADCK------TSGTIDFQFGNNLKISVP 275 (342)
T ss_dssp EEEE------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEEECTTSCEEEEECTT------CCCEEEEEETTTEEEEEE
T ss_pred ecCC------CcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeeeccCCCcEEEEECC------CCCcEEEEECCCcEEEEc
Confidence 8865 56899999999999999999999999987654221 22 3556797 479999999 57999999
Q ss_pred CCceEEEeC-----CCeEEEE-EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 373 TSNVFMNIS-----EDLVCSV-FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 373 ~~~y~~~~~-----~~~~C~~-i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
+++|+++.. ++..|++ |++. +.||||++|||++|+|||++++|||||+++|.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~C~~~i~~~-~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~ 334 (342)
T 2qzx_A 276 VSEFLFQTYYTSGKPFPKCEVRIRES-EDNILGDNFLRSAYVVYNLDDKKISMAPVKYTS 334 (342)
T ss_dssp GGGGEECCBCTTSCBCSSEEESEEEC-SSCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred HHHhcccccccCCCCCCccEEEEecC-CCcEeChHhhhcEEEEEECCCCEEEEEeeCCCC
Confidence 999998742 2357998 7765 579999999999999999999999999999975
No 15
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=1e-57 Score=441.75 Aligned_cols=298 Identities=21% Similarity=0.386 Sum_probs=256.6
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeee-----CCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQ-----CQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCA 154 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~-----~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~ 154 (427)
+..++...+.+|+++|.||||||++.|+|||||+++||+ |.+|. .| ..++.|||++|+|++...
T Consensus 3 i~~~l~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~--~C--~~~~~y~~~~SsT~~~~~------- 71 (339)
T 3fv3_A 3 ISLSLINEGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGV--DC--KSSGTFTPSSSSSYKNLG------- 71 (339)
T ss_dssp EEEEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTC--CT--TTTCCBCGGGCTTCEEEE-------
T ss_pred eeeEEEcCCCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCC--CC--CCCCcCCCccCcceeeCC-------
Confidence 456677788999999999999999999999999999998 44444 78 468899999999999987
Q ss_pred CCCCCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCCh---
Q 040562 155 PPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDAS--- 231 (427)
Q Consensus 155 ~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s--- 231 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||++...+ .+||||||++..+
T Consensus 72 ------------~~~~i~Yg~gs~~~G~~~~D~v~~g~~-----~v~~~~fg~~~~~~~-----~~GilGLg~~~~~~~~ 129 (339)
T 3fv3_A 72 ------------AAFTIRYGDGSTSQGTWGKDTVTINGV-----SITGQQIADVTQTSV-----DQGILGIGYTSNEAVY 129 (339)
T ss_dssp ------------EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEESS-----SSCEEECSCGGGCCCB
T ss_pred ------------ceEEEEECCCceEEEEEEEEEEEECCE-----EECceEEEEEEecCC-----CceeEEecCccccccc
Confidence 899999999987789999999999987 999999999998753 5899999997643
Q ss_pred -------------hHHhh---hhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEE
Q 040562 232 -------------LISQM---KTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAIS 291 (427)
Q Consensus 232 -------------l~~ql---~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~ 291 (427)
++.|| +.+.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. ..+|.|++++|+
T Consensus 130 ~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~ 205 (339)
T 3fv3_A 130 DTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGK-LVAEQVTS---SQALTISLASVN 205 (339)
T ss_dssp CTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSC-CEEEEBCC---SSSCEEEEEEEE
T ss_pred cccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecc-eEEEeccc---CccEEEEEEEEE
Confidence 44554 45678999999988643 9999999 6778887 99999987 568999999999
Q ss_pred ecceEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccC--CCcCCCcceeccCCCCccCeEEEEEe-CcE
Q 040562 292 VGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQ--PVEGPYDLCYSISSRPRFPEVTIHFR-DAD 368 (427)
Q Consensus 292 v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~--~~~~~~~~C~~~~~~~~~P~i~~~f~-g~~ 368 (427)
|+++.+.. ...++|||||++++||++++++|++++.+..... ....+..+|+. ..+|+|+|+|+ |.+
T Consensus 206 v~g~~~~~------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~----~~~p~i~f~f~~g~~ 275 (339)
T 3fv3_A 206 LKGSSFSF------GDGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQYLYFIDCNT----DTSGTTVFNFGNGAK 275 (339)
T ss_dssp ESSCEEEE------EEEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEETTEEEEEECTTC----CCCSEEEEEETTSCE
T ss_pred ECCEeecC------CccEEEeCCCCCEecCHHHHHHHHHHcCCEEccccccCceEEEecCC----CCCCcEEEEECCCCE
Confidence 99998876 4689999999999999999999999998765421 11246678985 25899999995 799
Q ss_pred EEecCCceEEEeCCCeEEEE-EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 369 VKLSTSNVFMNISEDLVCSV-FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 369 ~~l~~~~y~~~~~~~~~C~~-i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
++||+++|+++..+ ..|+. |++ ++.||||++|||++|+|||++++|||||+++|++
T Consensus 276 ~~v~~~~~~~~~~~-~~C~~~i~~-~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~ 332 (339)
T 3fv3_A 276 ITVPNTEYVYQNGD-GTCLWGIQP-SDDTILGDNFLRHAYLLYNLDANTISIAQVKYTT 332 (339)
T ss_dssp EEEEGGGGEEECSS-SCEEESEEE-CSSCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred EEECHHHheeeCCC-CeEEEEEEe-CCcEEeChHHHhCEEEEEECCCCEEEEEecCCCC
Confidence 99999999998644 46976 887 5789999999999999999999999999999985
No 16
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=1.5e-58 Score=445.37 Aligned_cols=297 Identities=26% Similarity=0.476 Sum_probs=254.2
Q ss_pred cCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCC
Q 040562 86 PNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEG 165 (427)
Q Consensus 86 ~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~ 165 (427)
..+.+|+++|.||||+|++.|+|||||+++||+|.+|....| ..++.|||++|+|++...
T Consensus 9 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~------------------ 68 (329)
T 1htr_B 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQAC--TSHSRFNPSESSTYSTNG------------------ 68 (329)
T ss_dssp GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHH--HTSCCBCGGGCTTCEEEE------------------
T ss_pred EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCccc--CCCCcCCCccCCCeEECC------------------
Confidence 778999999999999999999999999999999999974458 467899999999999976
Q ss_pred CceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------hHHhh-
Q 040562 166 NCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------LISQM- 236 (427)
Q Consensus 166 ~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l~~ql- 236 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||+....+ .| ....+||||||++..+ ++.+|
T Consensus 69 -~~~~i~Yg~gs~-~G~~~~D~v~~g~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~ 141 (329)
T 1htr_B 69 -QTFSLQYGSGSL-TGFFGYDTLTVQSI-----QVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMV 141 (329)
T ss_dssp -EEEEEEETTEEE-EEEEEEEEEEETTE-----EEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTCCSHHHHHH
T ss_pred -cEEEEEeCCCCe-EEEEEeeeEEEcce-----EECceEEEEEEEccccccccCCCceEEecCCCcccccCCCCHHHHHH
Confidence 899999999987 59999999999986 899999999998766 34 5678999999998765 33333
Q ss_pred --hhhccCceEEEeecCC---CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcE
Q 040562 237 --KTTIAGKFSYCLVQQS---STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDI 309 (427)
Q Consensus 237 --~~i~~~~Fs~~l~~~~---~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 309 (427)
+.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+... ..+..+
T Consensus 142 ~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~~---~~~~~a 214 (329)
T 1htr_B 142 QEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQ-IYWAPVTQ---ELYWQIGIEEFLIGGQASGWC---SEGCQA 214 (329)
T ss_dssp HTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEE-EEEEEBCS---SSSCEEEECEEEETTEECCTT---TTCEEE
T ss_pred hcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCc-eEEEECCC---CceEEEEEeEEEECCceeeec---CCCceE
Confidence 5577899999999874 39999999 4567776 99999986 679999999999999876411 336789
Q ss_pred EEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEEEE-
Q 040562 310 VIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVCSV- 388 (427)
Q Consensus 310 iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~- 388 (427)
||||||+++++|++++++|.+++.+.... ...+..+|+... .+|+|+|+|+|.+++|++++|+++.. + .|++
T Consensus 215 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~--~g~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~~-g-~C~~~ 287 (329)
T 1htr_B 215 IVDTGTSLLTVPQQYMSALLQATGAQEDE--YGQFLVNCNSIQ---NLPSLTFIINGVEFPLPPSSYILSNN-G-YCTVG 287 (329)
T ss_dssp EECTTCCSEEEEGGGHHHHHHHHTCEECT--TSCEEECGGGGG---GSCCEEEEETTEEEEECHHHHEEECS-S-CEEES
T ss_pred EEecCCccEECCHHHHHHHHHHhCCeecC--CCeEEEeCCCcc---cCCcEEEEECCEEEEECHHHhcccCC-C-EEEEE
Confidence 99999999999999999999998765422 114567899653 68999999999999999999999876 4 8996
Q ss_pred EEeC------CC-cceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 389 FNAR------DD-IPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 389 i~~~------~~-~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
|++. ++ .||||++|||++|+|||++++|||||+++
T Consensus 288 ~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 288 VEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp EEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 8753 24 79999999999999999999999999975
No 17
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=1.4e-58 Score=448.20 Aligned_cols=300 Identities=22% Similarity=0.358 Sum_probs=258.0
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC--CCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP--PSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~--~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
.++.+..+.+|+++|.||||||+++|++||||+++||+|..|. ...| ..++.|||++|+|++...
T Consensus 10 ~~l~n~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C--~~~~~y~~~~SsT~~~~~----------- 76 (341)
T 3k1w_A 10 VILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC--VYHKLFDASDSSSYKHNG----------- 76 (341)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHH--HTSCCBCGGGCTTCEEEE-----------
T ss_pred ccceEccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcc--cCCCCCCCCcCcCeeECC-----------
Confidence 4455667999999999999999999999999999999999997 3357 467899999999999876
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCC-C-CCCCceEeecCCCCCh-----
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGK-F-NSKTDGIVGLGGGDAS----- 231 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~s----- 231 (427)
|.|.+.|++|+. .|.+++|+|+|++. .+ ++.|||+....+. + ....+||||||++..+
T Consensus 77 --------~~~~i~Yg~gs~-~G~~~~D~v~ig~~-----~v-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~ 141 (341)
T 3k1w_A 77 --------TELTLRYSTGTV-SGFLSQDIITVGGI-----TV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVT 141 (341)
T ss_dssp --------EEEEEEETTEEE-EEEEEEEEEEETTE-----EE-EEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCC
T ss_pred --------CEEEEEECCcEE-EEEEEEEEEEECCc-----ee-eEEEEEEEEccccccccCCcceEEECCchhhcccCCC
Confidence 899999999984 69999999999987 88 9999999998763 4 5678999999998765
Q ss_pred -----hHHhhhhhccCceEEEeecCC------CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEee
Q 040562 232 -----LISQMKTTIAGKFSYCLVQQS------STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLG 298 (427)
Q Consensus 232 -----l~~ql~~i~~~~Fs~~l~~~~------~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~ 298 (427)
+.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.
T Consensus 142 ~~~~~l~~q-g~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~v~~~~~~ 216 (341)
T 3k1w_A 142 PIFDNIISQ-GVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGN-FHYINLIK---TGVWQIQMKGVSVGSSTLL 216 (341)
T ss_dssp CHHHHHHHH-TCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEE-EEEEECSS---TTSCEEEECCEEETTEEEE
T ss_pred CHHHHHHHC-CCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCc-eEEEecCC---CCEEEEEEeEEEECCEEee
Confidence 4445 6678999999998874 39999999 5667776 99999986 7899999999999998754
Q ss_pred eeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEE
Q 040562 299 VISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFM 378 (427)
Q Consensus 299 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~ 378 (427)
. .....++|||||+++++|++++++|++++.+..... .+..+|.... .+|+|+|+|+|.+++|++++|++
T Consensus 217 ~----~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~---g~~~~C~~~~---~~p~i~f~f~g~~~~l~~~~~~~ 286 (341)
T 3k1w_A 217 C----EDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLF---DYVVKCNEGP---TLPDISFHLGGKEYTLTSADYVF 286 (341)
T ss_dssp C----TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECSS---CEEEEGGGGG---GCCCEEEEETTEEEEECHHHHBC
T ss_pred c----CCCCEEEEECCCChhcCCHHHHHHHHHHcCCeecCC---CeEEeCCCCC---cCCcEEEEECCEEEEECHHHhee
Confidence 4 346889999999999999999999999997654322 2667898653 68999999999999999999998
Q ss_pred EeCC--CeEEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 379 NISE--DLVCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 379 ~~~~--~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+... +..|++ |++. ++.||||++|||++|+|||++++|||||+++
T Consensus 287 ~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 287 QESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp CSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 7542 578997 8763 2689999999999999999999999999985
No 18
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=4.3e-58 Score=448.70 Aligned_cols=295 Identities=19% Similarity=0.365 Sum_probs=253.0
Q ss_pred eeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCC
Q 040562 83 DIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCS 162 (427)
Q Consensus 83 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (427)
+.+..+.+|+++|+||||+|++.|+|||||+++||+|..|....| ..++.|||++|+|++...
T Consensus 56 l~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C--~~~~~y~~~~SsT~~~~~--------------- 118 (375)
T 1miq_A 56 LDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGC--SIKNLYDSSKSKSYEKDG--------------- 118 (375)
T ss_dssp GGGTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGG--GGSCCBCGGGCTTCEEEE---------------
T ss_pred cccCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccc--cCCCcCCCccCCceEECC---------------
Confidence 334578899999999999999999999999999999999975578 468999999999999976
Q ss_pred CCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEee----cCCCC-CCCCceEeecCCCCCh------
Q 040562 163 AEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTK----NGGKF-NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 163 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~----~~~~~-~~~~~GilGLg~~~~s------ 231 (427)
|.|.+.|++|+. .|.+++|+|+|++. .+++ .|||+.. .. .| ....+||||||++.++
T Consensus 119 ----~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~-----~v~~-~Fg~~~~~~~~~~-~f~~~~~dGilGLg~~~~s~~~~~~ 186 (375)
T 1miq_A 119 ----TKVDITYGSGTV-KGFFSKDLVTLGHL-----SMPY-KFIEVTDTDDLEP-IYSSVEFDGILGLGWKDLSIGSIDP 186 (375)
T ss_dssp ----EEEEEEETTEEE-EEEEEEEEEEETTE-----EEEE-EEEEEEECGGGTT-HHHHSCCCEEEECSSCCTTCSSCCC
T ss_pred ----cEEEEEeCCCeE-EEEEEEEEEEEcCc-----eECc-EEEEEEecccccc-ccccCCCceEEeCCCCcccccCCCC
Confidence 899999999995 59999999999986 8899 9999998 44 44 4678999999998765
Q ss_pred hHHhh---hhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCC
Q 040562 232 LISQM---KTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304 (427)
Q Consensus 232 l~~ql---~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 304 (427)
++.+| +.+.+++||+||.+.+ .|+|+||| .+++.|+ +.|+|+.. .++|.|.++ |+|+++.+ .
T Consensus 187 ~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~-i~v~g~~~-~----- 255 (375)
T 1miq_A 187 IVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGN-ITYEKLNH---DLYWQIDLD-VHFGKQTM-E----- 255 (375)
T ss_dssp HHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEE-EEEEEBSS---SSSSEEEEE-EEETTEEE-E-----
T ss_pred HHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCc-eEEEecCC---CceEEEEEE-EEECCEEc-c-----
Confidence 23333 5578899999999874 29999999 4567776 99999986 679999999 99999887 2
Q ss_pred CCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeC--C
Q 040562 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNIS--E 382 (427)
Q Consensus 305 ~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~--~ 382 (427)
+..+||||||+++++|++++++|.+++.+...... ..+..+|+. ..+|+|+|+|+|.+++|++++|+++.. +
T Consensus 256 -~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~~-g~~~~~C~~----~~~P~i~f~f~g~~~~l~~~~yi~~~~~~g 329 (375)
T 1miq_A 256 -KANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFL-PFYVTTCDN----KEMPTLEFKSANNTYTLEPEYYMNPILEVD 329 (375)
T ss_dssp -EEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTS-SCEEEETTC----TTCCCEEEECSSCEEEECGGGSEEESSSSS
T ss_pred -cceEEecCCCccEEcCHHHHHHHHHHhCCcccCCC-CeEEEECCC----CCCCcEEEEECCEEEEECHHHhEeeccCCC
Confidence 67899999999999999999999999976532221 146678986 268999999999999999999999875 2
Q ss_pred CeEEEE-EEeCC---CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 383 DLVCSV-FNARD---DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 383 ~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
...|+. |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 330 ~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 330 DTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp CSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 458986 88765 689999999999999999999999999975
No 19
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=1e-57 Score=442.37 Aligned_cols=300 Identities=22% Similarity=0.396 Sum_probs=254.4
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCC--CC-------CCCCCCCCCCCCCCCCCCcceeecCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQP--CP-------PSQCYKQDNPLFDPQRSSTYKYLSCSS 150 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~--c~-------~~~C~~~~~~~y~p~~Sst~~~~~c~~ 150 (427)
+..++...+.+|+++|.||||||++.|++||||+++||++.. |. ...| ..++.|||++|+|++...
T Consensus 3 v~~~l~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C--~~~~~y~~~~SsT~~~~~--- 77 (342)
T 3pvk_A 3 VPVTLHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFC--KQKGTYDPSGSSASQDLN--- 77 (342)
T ss_dssp EEEEEEECSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGG--GTTCCBCGGGCTTCEEEE---
T ss_pred cceEEecCCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCC--CCCCcCCCccCcceeecC---
Confidence 345666788999999999999999999999999999998653 52 2357 467899999999999987
Q ss_pred CCCCCCCCCCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCC
Q 040562 151 SQCAPPIKDSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDA 230 (427)
Q Consensus 151 ~~C~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~ 230 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||++... ..+||||||++..
T Consensus 78 ----------------~~~~i~Yg~gs~~~G~~~~D~v~ig~~-----~v~~~~fg~~~~~~-----~~~GilGLg~~~~ 131 (342)
T 3pvk_A 78 ----------------TPFKIGYGDGSSSQGTLYKDTVGFGGV-----SIKNQVLADVDSTS-----IDQGILGVGYKTN 131 (342)
T ss_dssp ----------------EEEEEECSSSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEES-----SSSCEEECSCGGG
T ss_pred ----------------CeEEEEecCCCeEEEEEEEEEEEECCE-----EecceEEEEEEccC-----CCccEEEecCccc
Confidence 899999999997779999999999987 99999999998864 5789999999863
Q ss_pred -------hhHHhh---hhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceE
Q 040562 231 -------SLISQM---KTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQR 296 (427)
Q Consensus 231 -------sl~~ql---~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~ 296 (427)
+++.|| +.+.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++.
T Consensus 132 ~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~g~~ 207 (342)
T 3pvk_A 132 EAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGS-LIALPVTS---DRELRISLGSVEVSGKT 207 (342)
T ss_dssp CSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSC-CEEEECCC---SSSCEEEEEEEEETTEE
T ss_pred cccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCccceeee-eEEeecCc---cceEEEEEeEEEECCEE
Confidence 344444 55788999999987643 9999999 6778887 99999987 56899999999999998
Q ss_pred eeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc--CCCcceeccCCCCccCeEEEEEe-CcEEEecC
Q 040562 297 LGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE--GPYDLCYSISSRPRFPEVTIHFR-DADVKLST 373 (427)
Q Consensus 297 ~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~--~~~~~C~~~~~~~~~P~i~~~f~-g~~~~l~~ 373 (427)
+... +..++|||||++++||++++++|++++.+........ .+..+|+ ..|+|+|+|+ |.+++||+
T Consensus 208 ~~~~-----~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~------~~p~i~f~f~~g~~~~vp~ 276 (342)
T 3pvk_A 208 INTD-----NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCN------LSGDVVFNFSKNAKISVPA 276 (342)
T ss_dssp EEEE-----EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEECTTSCEEEEECSC------CCSEEEEEESTTCEEEEEG
T ss_pred ecCC-----CceEEEeCCCCCeecCHHHHHHHHHHcCCeecccCCCceEEEEecC------CCCceEEEECCCCEEEEcH
Confidence 8763 4789999999999999999999999998776433221 3677898 4599999998 79999999
Q ss_pred CceEEEeC--CC---eEEEE-EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 374 SNVFMNIS--ED---LVCSV-FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 374 ~~y~~~~~--~~---~~C~~-i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
++|+++.. ++ ..|++ |++. +.||||++|||++|+|||++++|||||+++|++
T Consensus 277 ~~~~~~~~~~~g~~~~~C~~~i~~~-~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~ 334 (342)
T 3pvk_A 277 SEFAASLQGDDGQPYDKCQLLFDVN-DANILGDNFLRSAYIVYDLDDNEISLAQVKYTS 334 (342)
T ss_dssp GGGEEC----------CEEESEEEC-TTCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred HHheeeccccCCCcCCeeEEEEeeC-CCeEeCHHHHhcEEEEEECCCCEEEEEecCCCC
Confidence 99998732 22 67988 7774 789999999999999999999999999999974
No 20
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=1.7e-58 Score=458.59 Aligned_cols=297 Identities=20% Similarity=0.358 Sum_probs=252.1
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.++.+..+.+|+++|+||||||++.|++||||+++||+|.+|....| ..++.|||++|+|++...
T Consensus 130 ~~L~n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C--~~~~~ydps~SsT~~~~~------------- 194 (453)
T 2bju_A 130 IELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGC--LTKHLYDSSKSRTYEKDG------------- 194 (453)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTG--GGSCCBCGGGCTTCEEEE-------------
T ss_pred eeeEecCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCcccc--CCCCcCCCccCCceeECC-------------
Confidence 33445678999999999999999999999999999999999985578 568999999999999976
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecC--CC-C-CCCCceEeecCCCCCh-----
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNG--GK-F-NSKTDGIVGLGGGDAS----- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~--~~-~-~~~~~GilGLg~~~~s----- 231 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++ +.|||+.... +. | ....+||||||++.++
T Consensus 195 ------~~~~i~YgdGs~-~G~~~~Dtv~ig~~-----~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~ 261 (453)
T 2bju_A 195 ------TKVEMNYVSGTV-SGFFSKDLVTVGNL-----SLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVD 261 (453)
T ss_dssp ------EEEEEECSSSEE-EEEEEEEEEEETTE-----EEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCC
T ss_pred ------cEEEEEcCCCCe-EEEEEEEEEEEeCc-----EEE-EEEEEEEEecccCccccccCCceeEeccCCcccccCCC
Confidence 899999999995 59999999999986 888 9999999986 43 3 4678999999997654
Q ss_pred -hHHhh---hhhccCceEEEeecCC--CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccC
Q 040562 232 -LISQM---KTTIAGKFSYCLVQQS--STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGS 303 (427)
Q Consensus 232 -l~~ql---~~i~~~~Fs~~l~~~~--~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 303 (427)
++.+| +.+.+++||+||.+.+ .|+|+||| .+++.|+ +.|+|+.. .++|.|.++ |+|+++ +.
T Consensus 262 ~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~-l~~~pv~~---~~~w~V~l~-I~Vgg~-~~----- 330 (453)
T 2bju_A 262 PIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGP-LTYEKLNH---DLYWQITLD-AHVGNI-ML----- 330 (453)
T ss_dssp CHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEE-EEEEEEEE---ETTEEEEEE-EEETTE-EE-----
T ss_pred cHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCc-eEEEecCC---CceEEEEEE-EEECcE-Ee-----
Confidence 23333 5577899999999863 39999999 4567776 99999986 679999999 999994 32
Q ss_pred CCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-CCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC
Q 040562 304 NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-GPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE 382 (427)
Q Consensus 304 ~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~ 382 (427)
.+..+||||||+++++|++++++|.+++.+.. .... .+..+|+. ..+|+|+|+|+|.+++|++++|+++...
T Consensus 331 -~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~~--~~~g~~~~v~C~~----~~~P~itf~fgg~~~~l~~~~yi~~~~~ 403 (453)
T 2bju_A 331 -EKANCIVDSGTSAITVPTDFLNKMLQNLDVIK--VPFLPFYVTLCNN----SKLPTFEFTSENGKYTLEPEYYLQHIED 403 (453)
T ss_dssp -EEEEEEECTTCCSEEECHHHHHHHTTTSSCEE--CTTSSCEEEETTC----TTCCCEEEECSSCEEEECHHHHEEECTT
T ss_pred -ccccEEEcCCCCeEecCHHHHHHHHHHhCCcc--cCCCceEEEecCC----CCCCcEEEEECCEEEEECHHHhEeeccc
Confidence 26789999999999999999999999886542 1121 35678985 2689999999999999999999998753
Q ss_pred --CeEEEE-EEeCC---CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 383 --DLVCSV-FNARD---DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 383 --~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+..|++ |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 404 ~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 404 VGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp TSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 468996 88765 489999999999999999999999999986
No 21
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=5.6e-58 Score=459.64 Aligned_cols=305 Identities=24% Similarity=0.389 Sum_probs=253.1
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC-CCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP-PSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD 159 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~-~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 159 (427)
.++.+..+.+|+++|+||||||+|.|+|||||+++||+|..|. ...|. .++.|||++|+||+...
T Consensus 44 ~~l~n~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------ 109 (478)
T 1qdm_A 44 VALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACY--LHSRYKAGASSTYKKNG------------ 109 (478)
T ss_dssp GGGCCGGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGG--GSCCBCGGGCTTCBCCC------------
T ss_pred EEeEeccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCcccc--CCCCCCcccCCCeeeCC------------
Confidence 3444557889999999999999999999999999999999996 34684 57899999999999865
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------
Q 040562 160 SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 160 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------ 231 (427)
+.|.+.|++|+. .|.+++|+|+|++. .++++.||++....+ .| ...++||||||++.++
T Consensus 110 -------~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~-----~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~p 176 (478)
T 1qdm_A 110 -------KPAAIQYGTGSI-AGYFSEDSVTVGDL-----VVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVP 176 (478)
T ss_dssp -------CEEEEEETTEEE-EEEEEEEEEEETTE-----EEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCC
T ss_pred -------cEEEEEcCCCCe-EEEEEEEEEEECCe-----EECCEEEEEEEecCCcccccccccceecccccccccCCCCc
Confidence 899999999985 59999999999986 899999999998765 34 5678999999998765
Q ss_pred ----hHHhhhhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeec
Q 040562 232 ----LISQMKTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVIS 301 (427)
Q Consensus 232 ----l~~ql~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 301 (427)
+++| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. .++|.|.+++|+|+++.+...
T Consensus 177 ~~~~l~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~-l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~- 250 (478)
T 1qdm_A 177 VWYKMIEQ-GLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGE-HTYVPVTQ---KGYWQFDMGDVLVGGKSTGFC- 250 (478)
T ss_dssp HHHHHTTT-TCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEE-EEEEEEEE---ETTEEEEECCEEETTEECSTT-
T ss_pred HHHHHHHC-CCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCC-ceEEeccC---CCeEEEEEeEEEECCEEEeec-
Confidence 3344 5577899999998752 39999999 5567776 99999986 679999999999999876543
Q ss_pred cCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhc--------------------------------------------
Q 040562 302 GSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIA-------------------------------------------- 337 (427)
Q Consensus 302 ~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~-------------------------------------------- 337 (427)
..+..+||||||+++++|++++++|.+++.+...
T Consensus 251 --~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~~~~~~~~ 328 (478)
T 1qdm_A 251 --AGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGV 328 (478)
T ss_dssp --TTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC--------
T ss_pred --CCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccccccccCccccc
Confidence 2468899999999999999999999998864210
Q ss_pred ---------------------------------------------------------cCC-CcCCCcceeccCCCCccCe
Q 040562 338 ---------------------------------------------------------AQP-VEGPYDLCYSISSRPRFPE 359 (427)
Q Consensus 338 ---------------------------------------------------------~~~-~~~~~~~C~~~~~~~~~P~ 359 (427)
.+. ...+.++|.... .+|+
T Consensus 329 ~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~~---~lP~ 405 (478)
T 1qdm_A 329 SAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLG---SMPD 405 (478)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGGGT---TCCC
T ss_pred cccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeeccccc---cccc
Confidence 000 013445676543 6899
Q ss_pred EEEEEeCcEEEecCCceEEEeCC--CeEEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 360 VTIHFRDADVKLSTSNVFMNISE--DLVCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 360 i~~~f~g~~~~l~~~~y~~~~~~--~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
|+|+|+|++|+|+|++|+++..+ +..|++ |+.. ++.||||+.|||++|+|||++++|||||++.
T Consensus 406 i~f~~gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a~ 478 (478)
T 1qdm_A 406 IEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478 (478)
T ss_dssp EEEEETTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeCC
Confidence 99999999999999999998754 358998 7743 2579999999999999999999999999863
No 22
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=2.2e-57 Score=448.77 Aligned_cols=325 Identities=19% Similarity=0.375 Sum_probs=254.0
Q ss_pred ecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-CCC-----
Q 040562 85 IPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-PIK----- 158 (427)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~~~----- 158 (427)
+..+++|+++|.||||||++.|+|||||+++||+|.+| .+|+|++.++|.++.|.. +..
T Consensus 17 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~---------------~~Sst~~~~~C~s~~C~~~~~~~c~~c 81 (403)
T 3aup_A 17 DGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ---------------YSSKTYQAPFCHSTQCSRANTHQCLSC 81 (403)
T ss_dssp CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC---------------CCCSSCBCCCTTBHHHHHTTCCCEEEC
T ss_pred CCCCceEEEEEECCCCCceeEEEEECCCCceeECCCCC---------------CCCCCCCccCCCCccccCccccCcccc
Confidence 45789999999999999999999999999999998743 368899999999888875 321
Q ss_pred -----CCCCCCCCceeeeeeC-CCCeEEEEEEEEEEEEcCCCCCc------eecCcEEEEeEeecCCC-C-CCCCceEee
Q 040562 159 -----DSCSAEGNCRYSVSYG-DDSFSNGDLATETVTVGSTSGQA------VALPEIVFGCGTKNGGK-F-NSKTDGIVG 224 (427)
Q Consensus 159 -----~~c~~~~~~~~~~~Y~-~g~~~~G~~~~D~v~ig~~~~~~------~~~~~~~fg~~~~~~~~-~-~~~~~GilG 224 (427)
..|. .+.|.|.+.|+ +|+.+.|.+++|+|+|++.++.. +.++++.|||+...... + ....+||||
T Consensus 82 ~~~~~s~~~-~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlG 160 (403)
T 3aup_A 82 PAASRPGCH-KNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAG 160 (403)
T ss_dssp SSSCBTTBC-SSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEE
T ss_pred CCCCCCCCC-CCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEE
Confidence 1232 24699999998 78878899999999999843322 58899999999987543 3 467899999
Q ss_pred cCCCCChhHHhhhh--hccCceEEEeecC--CCceeeeCC-CCcc--c-C----CCeeeeccccCCCCccEEEEeeEEEe
Q 040562 225 LGGGDASLISQMKT--TIAGKFSYCLVQQ--SSTKINFGT-NGIV--S-G----SGVVSTPLLAKNPKTFYSLTLDAISV 292 (427)
Q Consensus 225 Lg~~~~sl~~ql~~--i~~~~Fs~~l~~~--~~G~l~fGg-~~~~--~-g----~~~~~~p~~~~~~~~~w~v~l~~i~v 292 (427)
||++.+++.+|++. +.+++||+||.+. ..|+|+||| ..++ . | ..+.|+|++..+ .++|.|+|++|+|
T Consensus 161 Lg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGgd~~~~~~~~G~~~~~~l~~~Pl~~~~-~~~y~v~l~~i~v 239 (403)
T 3aup_A 161 LGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITL-QGEYNVRVNSIRI 239 (403)
T ss_dssp CSSSTTSHHHHHHHHHTCCSEEEEECCSCTTSCEEEEESCHHHHC--CTTCCTTTTEEEEECEECT-TSCEEECEEEEEE
T ss_pred CCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCCCeeEEECCCchhccccccccccCceeecccccCC-CCcceEEEEEEEE
Confidence 99999999998865 5679999999884 239999999 3344 3 4 249999999854 3799999999999
Q ss_pred cceEe-eeeccC-----CCCCcEEEccCCccccccHHHHHHHHHHHHhhhcc-CCC--cCCCcceeccCCCCccCeEEEE
Q 040562 293 GDQRL-GVISGS-----NPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAA-QPV--EGPYDLCYSISSRPRFPEVTIH 363 (427)
Q Consensus 293 ~~~~~-~~~~~~-----~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~-~~~--~~~~~~C~~~~~~~~~P~i~~~ 363 (427)
+++.+ .++... .+..++||||||++++||+++|++|+++|.+++.. ... ......|+.-.....+|+|+|+
T Consensus 240 ~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~~c~~~~~~P~i~f~ 319 (403)
T 3aup_A 240 NQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKINAYPSVDLV 319 (403)
T ss_dssp TTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCEECGGGCCCCCCEEEE
T ss_pred CCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCceEECCCcCcCCcEEEE
Confidence 99988 543211 22457999999999999999999999999765532 110 0122345533222268999999
Q ss_pred EeCc---EEEecCCceEEEeCCCeEEEEEEeCC----CcceechhhhcceEEEEeCCCCEEEE-------eeCCCCC
Q 040562 364 FRDA---DVKLSTSNVFMNISEDLVCSVFNARD----DIPLYGNIMQTNFLIGYDIEGRTVSF-------KPTDCSK 426 (427)
Q Consensus 364 f~g~---~~~l~~~~y~~~~~~~~~C~~i~~~~----~~~ilG~~fl~~~y~vfD~~~~riGf-------a~~~c~~ 426 (427)
|+|. +++|++++|+++..++..|++|++.+ +.||||+.|||++|+|||++++|||| ++++|++
T Consensus 320 f~g~~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGf~A~~~~~~~~~C~~ 396 (403)
T 3aup_A 320 MDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVKCAD 396 (403)
T ss_dssp ESSTTCCEEEECHHHHEEEC---CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTEEEEESSCGGGGTCCGGG
T ss_pred EcCCCceEEEEcccceEEEcCCCeEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCEEEEecccccccCCCccc
Confidence 9985 99999999999876667899988754 57999999999999999999999999 7778865
No 23
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=1.2e-57 Score=453.14 Aligned_cols=296 Identities=17% Similarity=0.279 Sum_probs=254.1
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.++.+..+.+|+++|+||||||++.|++||||+++||+|..|....| ..++.|||++|+|++...
T Consensus 129 ~pL~n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C--~~~~~ydps~SsT~~~~~------------- 193 (451)
T 3qvc_A 129 VELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESC--ESKNHYDSSKSKTYEKDD------------- 193 (451)
T ss_dssp CCGGGGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGG--TTSCCBCGGGCTTCEEEE-------------
T ss_pred cceeecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCcccc--CCCCCCCCCCCcccccCC-------------
Confidence 34445678899999999999999999999999999999999975578 578999999999999876
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEee----cCCCC-CCCCceEeecCCCCCh----
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTK----NGGKF-NSKTDGIVGLGGGDAS---- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~----~~~~~-~~~~~GilGLg~~~~s---- 231 (427)
+.|.+.|++|+ +.|.+++|+|+|++. .++ +.|||+.. ..+ | ....+||||||++..+
T Consensus 194 ------~~f~i~YgdGs-~~G~~~~Dtv~igg~-----~v~-~~Fg~a~~t~~~~~~-f~~~~~dGILGLg~~~~s~~~~ 259 (451)
T 3qvc_A 194 ------TPVKLTSKAGT-ISGIFSKDLVTIGKL-----SVP-YKFIEMTEIVGFEPF-YSESDVDGVFGLGWKDLSIGSI 259 (451)
T ss_dssp ------EEEEEECSSEE-EEEEEEEEEEEETTE-----EEE-EEEEEEEEEEECTTH-HHHSCCCEEEECSSBCSSSSCC
T ss_pred ------CEEEEEECCCE-EEEEEEEEEEEECCE-----EEE-EEEEEEEeccccCCC-ccCCCCCEEEecCCCcccccCC
Confidence 89999999999 569999999999987 888 99999998 655 5 4578999999997654
Q ss_pred ------hHHhhhhhccCceEEEeecCCC--ceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeec
Q 040562 232 ------LISQMKTTIAGKFSYCLVQQSS--TKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVIS 301 (427)
Q Consensus 232 ------l~~ql~~i~~~~Fs~~l~~~~~--G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 301 (427)
+.+| +.+.+++||+||.+... |+|+||| .+++.|+ +.|+|+.. .++|.|.++ |+|+++ .
T Consensus 260 ~~~~~~L~~q-g~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~-l~~~pv~~---~~~w~v~l~-I~Vgg~-~---- 328 (451)
T 3qvc_A 260 DPYIVELKTQ-NKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGP-LNYEKLNH---DLMWQVDLD-VHFGNV-S---- 328 (451)
T ss_dssp CCHHHHHHHT-TSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEE-EEEEECSS---TTSSEEEEE-EEETTE-E----
T ss_pred CCHHHHHHHc-CCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCc-eEEEEccc---CCeeEEEEE-EEECCc-c----
Confidence 3444 56789999999998753 9999999 5667776 99999986 789999999 999998 2
Q ss_pred cCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeC
Q 040562 302 GSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNIS 381 (427)
Q Consensus 302 ~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~ 381 (427)
.....++|||||+++++|++++++|.+++.+..... ...+..+|. . ..+|+|+|+|+|.+++||+++|+++..
T Consensus 329 --~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~~~-~g~y~v~C~-~---~~~P~itf~fgg~~i~lp~~~yi~~~~ 401 (451)
T 3qvc_A 329 --SKKANVILDSATSVITVPTEFFNQFVESASVFKVPF-LSLYVTTCG-N---TKLPTLEYRSPNKVYTLEPKQYLEPLE 401 (451)
T ss_dssp --EEEEEEEECTTBSSEEECHHHHHHHHTTTTCEECTT-SSCEEEETT-C---TTCCCEEEEETTEEEEECHHHHEEECT
T ss_pred --CCCceEEEeCCCccccCCHHHHHHHHHHcCCeecCC-CCeEEeeCC-c---CcCCcEEEEECCEEEEEcHHHheeecc
Confidence 226789999999999999999999999987654321 224667898 3 378999999999999999999999865
Q ss_pred --CCeEEEE-EEeCC---CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 382 --EDLVCSV-FNARD---DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 382 --~~~~C~~-i~~~~---~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
++..|++ |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 402 ~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 402 NIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp TTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred cCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 2468987 88764 579999999999999999999999999975
No 24
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=4.2e-57 Score=435.06 Aligned_cols=299 Identities=17% Similarity=0.249 Sum_probs=253.3
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
++.+..+.+|+++|+|| +|++.|+|||||+++||+|..|....|....++.|||++| |++...
T Consensus 10 ~l~n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~~-------------- 72 (330)
T 1yg9_A 10 LVHVFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISDG-------------- 72 (330)
T ss_dssp CEEEEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEEE--------------
T ss_pred eeecCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEECC--------------
Confidence 44456789999999999 9999999999999999999999755785457789999999 999876
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC-CCCCceEeecCCCCCh-------hH
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF-NSKTDGIVGLGGGDAS-------LI 233 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s-------l~ 233 (427)
+.|++.|++|+. .|.+++|+|+|++. .++++.|||+......| ....+||||||++.++ ++
T Consensus 73 -----~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~-----~~~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~ 141 (330)
T 1yg9_A 73 -----NVQVKFFDTGSA-VGRGIEDSLTISQL-----TTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNALKGKTVL 141 (330)
T ss_dssp -----EEEEEETTTEEE-EEEEEEEEEEETTE-----EEEEEEEEEEEEECTHHHHTTCSEEEECSCTTSCCTTSCCCHH
T ss_pred -----CEEEEEECCceE-EEEEEEEEEEECCE-----EEcCeEEEEEEEcccccccccCceEEEcCcchhccccCCCCHH
Confidence 899999999988 69999999999986 89999999999884344 4678999999998776 33
Q ss_pred Hhh---hhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCC
Q 040562 234 SQM---KTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSN 304 (427)
Q Consensus 234 ~ql---~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 304 (427)
++| +.+ +++||+||.+.. .|+|+||| ++++.|+ +.|+|+.. .++|.|++++|+|+++.+. .
T Consensus 142 ~~l~~qg~i-~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~v~~~~~~-----~ 211 (330)
T 1yg9_A 142 ENFVEENLI-APVFSIHHARFQDGEHFGEIIFGGSDWKYVDGE-FTYVPLVG---DDSWKFRLDGVKIGDTTVA-----P 211 (330)
T ss_dssp HHHHHTTSS-CSEEEEEEEECTTSCEEEEEEETSCCGGGEEEE-EEEEEBSC---TTSCCEECSEEEETTEEEE-----C
T ss_pred HHHHhcCCC-CceEEEEEcCCCCCCCCCEEEECCcCHHHccCc-eEEEECCC---CCEEEEEeCeEEECCEEEc-----C
Confidence 333 557 999999999862 39999999 4567776 99999985 7899999999999998765 2
Q ss_pred CCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCC-CcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCC
Q 040562 305 PGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGP-YDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISED 383 (427)
Q Consensus 305 ~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~-~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~ 383 (427)
.+..+||||||+++++|++++++|++++.+.........+ ..+|+... .+|+|+|+|+|.+++|++++|+++. +
T Consensus 212 ~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~g~~~~~~~~C~~~~---~~p~i~f~fgg~~~~l~~~~y~~~~--~ 286 (330)
T 1yg9_A 212 AGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIP---SLPDVTFVINGRNFNISSQYYIQQN--G 286 (330)
T ss_dssp TTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEEECSSCEEEEECGGGGG---GSCCEEEEETTEEEEECHHHHEEEE--T
T ss_pred CCcEEEEecCCccccCCHHHHHHHHHHhCCcccCCCceEEEEEECCCcc---ccCcEEEEECCEEEEECHHHhcccC--C
Confidence 3688999999999999999999999999765322110024 56798643 6899999999999999999999987 4
Q ss_pred eEEEE-EEeC--CCcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 384 LVCSV-FNAR--DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 384 ~~C~~-i~~~--~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
..|++ |++. ++.||||++|||++|+|||++++|||||+++
T Consensus 287 ~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 287 NLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp TEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 58997 8764 3689999999999999999999999999975
No 25
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=4.6e-57 Score=434.08 Aligned_cols=301 Identities=21% Similarity=0.357 Sum_probs=252.0
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.......+.+|+++|+|| +|++.|+|||||+++||+|.+|. .|..+.++.|||++|+ ++...
T Consensus 6 ~~~~~~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~--~~~c~~~~~y~~~~Ss-~~~~~------------- 67 (325)
T 1ibq_A 6 VTTPQNNDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELP--SSEQTGHDLYTPSSSA-TKLSG------------- 67 (325)
T ss_dssp EEEECTTTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSC--HHHHTTSCCCBCCSSC-EECTT-------------
T ss_pred EeEEcCCCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCC--ccccCCCCCCCchhcC-CccCC-------------
Confidence 334455789999999999 99999999999999999999998 6665788999999998 54322
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh-------
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS------- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------- 231 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+....+.+ ....+||||||++.++
T Consensus 68 ------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~-----~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~ 136 (325)
T 1ibq_A 68 ------YSWDISYGDGSSASGDVYRDTVTVGGV-----TTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQ 136 (325)
T ss_dssp ------CBEEEECSSSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCC
T ss_pred ------CEEEEEeCCCCEEEEEEEEeEEEECCE-----EEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCCC
Confidence 899999999997779999999999986 89999999999877644 2578999999997654
Q ss_pred --hHHhhhh-hccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCC
Q 040562 232 --LISQMKT-TIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306 (427)
Q Consensus 232 --l~~ql~~-i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 306 (427)
+++||.. +.+++||+||.+...|+|+||| .+++.|+ +.|+|+... .++|.|++++|+|+++.+. ...
T Consensus 137 ~~~~~~l~~~i~~~~FS~~l~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~--~~~w~v~l~~i~v~~~~~~-----~~~ 208 (325)
T 1ibq_A 137 TTFFDTVKSQLDSPLFAVQLKHDAPGVYDFGYIDDSKYTGS-ITYTDADSS--QGYWGFSTDGYSIGDGSSS-----SSG 208 (325)
T ss_dssp CCHHHHHGGGSSSSEEEEEEETTEEEEEEESSCCGGGBSSC-CEEEECBCT--TSSCEEEECEEEETTSCCB-----SCC
T ss_pred CCHHHHHHHhcCCcEEEEEecCCCCceEEECCcChhhccCc-eEEEEcCCC--CceEEEEECcEEECCeecc-----CCC
Confidence 4566543 6789999999985449999999 4577777 999999843 6799999999999998664 236
Q ss_pred CcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--Ce
Q 040562 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DL 384 (427)
Q Consensus 307 ~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~ 384 (427)
..+||||||+++++|++++++|++++.++........+..+|+ ..+|+|+|+|+|.+++||+++|++...+ ..
T Consensus 209 ~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~~~~~~g~~~~~C~-----~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~ 283 (325)
T 1ibq_A 209 FSAIADTGTTLILLDDEIVSAYYEQVSGAQESYEAGGYVFSCS-----TDLPDFTVVIGDYKAVVPGKYINYAPVSTGSS 283 (325)
T ss_dssp EEEEECTTCCSEEECHHHHHHHHTTSTTCBCCSSSSSCEEETT-----CCCCCEEEEETTEEEEECHHHHEEEESSTTCS
T ss_pred ceEEEeCCCCcEeCCHHHHHHHHHhCCCceEcCcCCeEEEEcC-----CCCCcEEEEECCEEEEECHHHhcccccCCCCC
Confidence 7899999999999999999999999854432222224566798 2689999999999999999999987633 36
Q ss_pred EEEE-EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 385 VCSV-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 385 ~C~~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
.|++ |++.+ +.||||++|||++|+|||++++|||||+++
T Consensus 284 ~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 284 TCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp EEEESEEECTTTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred eEEEEEEcCCCCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 8998 87754 689999999999999999999999999874
No 26
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=4.4e-57 Score=433.67 Aligned_cols=300 Identities=19% Similarity=0.320 Sum_probs=251.0
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDS 160 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (427)
.......+.+|+++|+|| ||++.|+|||||+++||+|.+|. .|..+.++.|||++|+ ++...
T Consensus 7 ~~~~~~~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~--~~~c~~~~~y~~~~Ss-~~~~~------------- 68 (323)
T 1izd_A 7 TTNPTSNDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTP--SSERSGHDYYTPGSSA-QKIDG------------- 68 (323)
T ss_dssp EEEECGGGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSC--HHHHTTCCCBCCCTTC-EEEEE-------------
T ss_pred eeeEcCCCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCC--cccccCCCCCCccccC-CccCC-------------
Confidence 333345788999999999 89999999999999999999998 6655788999999999 66443
Q ss_pred CCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh-------
Q 040562 161 CSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS------- 231 (427)
Q Consensus 161 c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------- 231 (427)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||++...+.+ ....+||||||++.++
T Consensus 69 ------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~-----~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~ 137 (323)
T 1izd_A 69 ------ATWSISYGDGSSASGDVYKDKVTVGGV-----SYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQ 137 (323)
T ss_dssp ------EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCC
T ss_pred ------CeEEEEcCCCCeEEEEEEEEEEEECCE-----EECceEEEEEEeccccccccCCCceEEecCcccccccCCCCC
Confidence 899999999997779999999999986 89999999999877644 3678999999997654
Q ss_pred --hHHhhh-hhccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCC
Q 040562 232 --LISQMK-TTIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPG 306 (427)
Q Consensus 232 --l~~ql~-~i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 306 (427)
++++|. .+.+++||+||.+...|+|+||| ++++.|+ +.|+|+... .++|.|++++|+|++ .+. ...
T Consensus 138 ~~~~~~l~~~i~~~~FS~~L~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~--~~~w~v~l~~i~v~~-~~~-----~~~ 208 (323)
T 1izd_A 138 KTFFDNVKSSLSEPIFAVALKHNAPGVYDFGYTDSSKYTGS-ITYTDVDNS--QGFWGFTADGYSIGS-DSS-----SDS 208 (323)
T ss_dssp CCHHHHHGGGSSSSEEEEECCTTSCEEEEESSCCTTSEEEE-EEEEECBCT--TSSCEEEESEEEETT-EEE-----CCC
T ss_pred CCHHHHHHHhccCcEEEEEccCCCCCEEEECCcCccccccc-eEEEECCCC--CceEEEEECeEEECC-ccc-----CCC
Confidence 345543 35789999999986559999999 5567776 999999842 679999999999999 543 346
Q ss_pred CcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCCCeEE
Q 040562 307 GDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISEDLVC 386 (427)
Q Consensus 307 ~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C 386 (427)
..+||||||+++++|++++++|++++.++........+..+|+ ..+|+|+|+|+|.+++||+++|+++..++..|
T Consensus 209 ~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~~~~~~g~~~~~C~-----~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~C 283 (323)
T 1izd_A 209 ITGIADTGTTLLLLDDSIVDAYYEQVNGASYDSSQGGYVFPSS-----ASLPDFSVTIGDYTATVPGEYISFADVGNGQT 283 (323)
T ss_dssp EEEEECTTCCSEEECHHHHHHHHTTSTTCEEETTTTEEEEETT-----CCCCCEEEEETTEEEEECHHHHEEEECSTTEE
T ss_pred ceEEEeCCCcceeCCHHHHHHHHHhCCCcEEcCcCCEEEEECC-----CCCceEEEEECCEEEecCHHHeEEecCCCCeE
Confidence 7899999999999999999999999854332222223556798 26899999999999999999999887556789
Q ss_pred EE-EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 387 SV-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 387 ~~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
++ |++.+ +.||||++|||++|+|||++++|||||++.
T Consensus 284 ~~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 284 FGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp EESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcCCCCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 98 88754 689999999999999999999999999863
No 27
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=6.2e-57 Score=432.78 Aligned_cols=300 Identities=21% Similarity=0.375 Sum_probs=250.1
Q ss_pred ccceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCC
Q 040562 80 SQADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD 159 (427)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 159 (427)
+.......+.+|+++|+|| +|++.|+|||||+++||+|.+|. .|..+.++.|||++|+ ++...
T Consensus 6 v~~~~~~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~--~~~c~~~~~y~~~~Ss-~~~~~------------ 68 (323)
T 1bxo_A 6 ATNTPTANDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELP--ASQQSGHSVYNPSATG-KELSG------------ 68 (323)
T ss_dssp EEEEECGGGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSC--HHHHTTSCCBCHHHHC-EEEEE------------
T ss_pred eeeeecCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCC--chhccCCCCCCcccCC-cccCC------------
Confidence 3334445788999999999 99999999999999999999998 6665788999999998 66544
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh------
Q 040562 160 SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 160 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------ 231 (427)
|.|++.|++|+.+.|.+++|+|+|++. .++++.|||++...+.+ ....+||||||++.++
T Consensus 69 -------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~-----~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~ 136 (323)
T 1bxo_A 69 -------YTWSISYGDGSSASGNVFTDSVTVGGV-----TAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQS 136 (323)
T ss_dssp -------EEEEEECTTSCEEEEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSC
T ss_pred -------CeEEEEeCCCCeEEEEEEEEEEEECCE-----EECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCC
Confidence 899999999997779999999999986 89999999999876644 3578999999997544
Q ss_pred ---hHHhhh-hhccCceEEEeecCCCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCC
Q 040562 232 ---LISQMK-TTIAGKFSYCLVQQSSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNP 305 (427)
Q Consensus 232 ---l~~ql~-~i~~~~Fs~~l~~~~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 305 (427)
++++|. .+.+++||+||.+...|+|+||| ++++.|+ +.|+|+... .++|.|++++|+|++ . . ..
T Consensus 137 ~~~~~~~l~~~i~~~~FS~~L~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~--~~~w~v~l~~i~v~~-~-~-----~~ 206 (323)
T 1bxo_A 137 QTTFFDTVKSSLAQPLFAVALKHQQPGVYDFGFIDSSKYTGS-LTYTGVDNS--QGFWSFNVDSYTAGS-Q-S-----GD 206 (323)
T ss_dssp CCCHHHHHGGGBSSSEEEEECCSSSCEEEEESSCCGGGBSSC-CEEEECBCT--TSSCEEEEEEEEETT-E-E-----EE
T ss_pred CCCHHHHHHHhcCCcEEEEEEeCCCCceEEEeCcChhhccCc-eEEEECCCC--CCeEEEEEeeEEECC-c-c-----CC
Confidence 445543 36789999999886559999999 4567777 999999853 679999999999998 2 2 12
Q ss_pred CCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC-Ce
Q 040562 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE-DL 384 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~-~~ 384 (427)
...+||||||+++++|++++++|++++.++........+..+|+ ..+|+|+|+|+|.+++||+++|+++..+ ..
T Consensus 207 ~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~~~~~~g~~~~~C~-----~~~P~i~f~fgg~~~~l~~~~~~~~~~~~~~ 281 (323)
T 1bxo_A 207 GFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCS-----TNLPDFSVSISGYTATVPGSLINYGPSGDGS 281 (323)
T ss_dssp EEEEEECTTCSSEEECHHHHHHHHTTSTTCEEETTTTEEEECTT-----CCCCCEEEEETTEEEEECHHHHEEEECSSSS
T ss_pred CceEEEeCCCCceeCCHHHHHHHHHhCCCceEcCcCCEEEEECC-----CCCceEEEEECCEEEEECHHHeEEeccCCCC
Confidence 67899999999999999999999999854432222223556798 2689999999999999999999987643 36
Q ss_pred EEEE-EEeCC--CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 385 VCSV-FNARD--DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 385 ~C~~-i~~~~--~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
.|++ |++.+ +.||||++|||++|+|||++++|||||++.
T Consensus 282 ~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 282 TCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp CEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred eEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 8998 88753 689999999999999999999999999874
No 28
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-55 Score=431.84 Aligned_cols=309 Identities=21% Similarity=0.348 Sum_probs=250.2
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
.+....+..|+++|+||||+|++.|+|||||+++||+|.+|. .| ++.|||++|+||+...
T Consensus 6 ~l~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~--~~----~~~f~~~~SsT~~~~~-------------- 65 (383)
T 2ewy_A 6 NLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHS--YI----DTYFDTERSSTYRSKG-------------- 65 (383)
T ss_dssp CEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBT--TB----SCCCCGGGCTTCEEEE--------------
T ss_pred eccCCCCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCC--cc----ccCcccccCccceeCC--------------
Confidence 344445678999999999999999999999999999999887 45 5789999999999986
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceec-CcEEEEeEeecCCCC--CCCCceEeecCCCCC--------
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVAL-PEIVFGCGTKNGGKF--NSKTDGIVGLGGGDA-------- 230 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~-~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~-------- 230 (427)
|.|.+.|++|+. .|.+++|+|+|++.. .. ..+.|++.....+.| ....+||||||++.+
T Consensus 66 -----~~~~i~Yg~Gs~-~G~~~~Dtv~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~ 135 (383)
T 2ewy_A 66 -----FDVTVKYTQGSW-TGFVGEDLVTIPKGF----NTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLE 135 (383)
T ss_dssp -----EEEEEECSSCEE-EEEEEEEEEEETTTE----EEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSC
T ss_pred -----ceEEEEECCcEE-EEEEEEEEEEECCCc----cceeEEEEEEEEeecceeeccCcCceEEecCchhccccccccc
Confidence 899999999987 599999999998641 11 135688876655544 356899999999765
Q ss_pred ----hhHHhhhhhccCceEEEeecC---------CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecce
Q 040562 231 ----SLISQMKTTIAGKFSYCLVQQ---------SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQ 295 (427)
Q Consensus 231 ----sl~~ql~~i~~~~Fs~~l~~~---------~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~ 295 (427)
++++| +.+ +++||+||.+. ..|+|+||| .+++.|+ +.|+|+.. ..+|.|.+++|+|+++
T Consensus 136 ~~~~~l~~q-~~i-~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~g~ 209 (383)
T 2ewy_A 136 TFFDSLVTQ-ANI-PNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGD-IWYTPIKE---EWYYQIEILKLEIGGQ 209 (383)
T ss_dssp CHHHHHHHH-HTC-CSCEEEEECCC---------CCEEEEETSCCGGGCCSC-EEEEECSS---BTTBBCCEEEEEETTE
T ss_pred CHHHHHHHc-cCC-CcceEEEeeccccccccCCCCCeEEEeCccchhhccCc-cEEEecCC---CceEEEEEEEEEECCE
Confidence 35666 455 78999999631 229999999 4567776 99999986 6799999999999999
Q ss_pred EeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-----CCCcceeccCCC--CccCeEEEEEeCc-
Q 040562 296 RLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCYSISSR--PRFPEVTIHFRDA- 367 (427)
Q Consensus 296 ~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-----~~~~~C~~~~~~--~~~P~i~~~f~g~- 367 (427)
.+..+........+||||||+++++|++++++|++++.+........ .+..+|+..... ..+|+|+|+|+|.
T Consensus 210 ~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~ 289 (383)
T 2ewy_A 210 SLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDEN 289 (383)
T ss_dssp ECCCCTTTTTSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCSSCCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSS
T ss_pred EccccccccCCccEEEEcCCccccCCHHHHHHHHHHHhhhcccccCccccccccccccccCCcccHhhCCcEEEEECCCC
Confidence 88754321224689999999999999999999999999876532211 246789975321 2589999999984
Q ss_pred -----EEEecCCceEEEeC---CCeEEEE--EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 368 -----DVKLSTSNVFMNIS---EDLVCSV--FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 368 -----~~~l~~~~y~~~~~---~~~~C~~--i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
+++|++++|+++.. .+..|++ +.+.++.||||++|||++|+|||++++|||||+++|+.
T Consensus 290 ~~~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~ 358 (383)
T 2ewy_A 290 SSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPCAE 358 (383)
T ss_dssp TTEEEEEEECHHHHEEEECCCTTCSEEEEESEEEESSCEEECHHHHTTEEEEEETTTTEEEEEECTTCB
T ss_pred CCceEEEEEChHHheeecccCCCCceeEEEEecCCCCcEEEChHHhCCeeEEEECCCCeEEEEeccCCC
Confidence 79999999998864 3568985 56555789999999999999999999999999999963
No 29
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=5.4e-55 Score=430.91 Aligned_cols=306 Identities=20% Similarity=0.336 Sum_probs=248.1
Q ss_pred eecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCC
Q 040562 84 IIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSA 163 (427)
Q Consensus 84 ~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (427)
....+.+|+++|+||||+|++.|+|||||+++||+|.+|. . .++.|||++|+||+...
T Consensus 16 ~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~--~----~~~~y~~~~SsT~~~~~---------------- 73 (395)
T 2qp8_A 16 RGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHP--F----LHRYYQRQLSSTYRDLR---------------- 73 (395)
T ss_dssp EEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCT--T----CSCCCCGGGCTTCEEEE----------------
T ss_pred CCCCCceEEEEEEecCCCceEEEEEecCCCceEEECCCCc--c----ccCCcCcccCCCceeCC----------------
Confidence 3445778999999999999999999999999999999886 3 46889999999999986
Q ss_pred CCCceeeeeeCCCCeEEEEEEEEEEEEcC-CCCCceecC-cEEEEeEeecCCCC--CCCCceEeecCCCCC---------
Q 040562 164 EGNCRYSVSYGDDSFSNGDLATETVTVGS-TSGQAVALP-EIVFGCGTKNGGKF--NSKTDGIVGLGGGDA--------- 230 (427)
Q Consensus 164 ~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~-~~~~~~~~~-~~~fg~~~~~~~~~--~~~~~GilGLg~~~~--------- 230 (427)
|.|.+.|++|+. .|.+++|+|+|++ . .+. .+.|++.....+.| ....+||||||++.+
T Consensus 74 ---~~~~i~Yg~Gs~-~G~~~~Dtv~ig~g~-----~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~~ 144 (395)
T 2qp8_A 74 ---KGVYVPYTQGKW-EGELGTDLVSIPHGP-----NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEP 144 (395)
T ss_dssp ---EEEEEECSSCEE-EEEEEEEEEECTTSC-----SCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCC
T ss_pred ---ceEEEEECCcEE-EEEEEeEEEEECCCC-----CceEEEEEEEEEccCcccccccCccceEEcCchhhccCCCCCCC
Confidence 899999999987 5999999999984 3 232 36688777655544 357899999999765
Q ss_pred ---hhHHhhhhhccCceEEEeecC------------CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEec
Q 040562 231 ---SLISQMKTTIAGKFSYCLVQQ------------SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVG 293 (427)
Q Consensus 231 ---sl~~ql~~i~~~~Fs~~l~~~------------~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~ 293 (427)
+|.+| +.+. ++||+||.+. ..|+|+||| .+++.|+ +.|+|+.. ..+|.|.|++|+|+
T Consensus 145 ~~~~l~~q-~~i~-~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~ 218 (395)
T 2qp8_A 145 FFDSLVKQ-THVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS-LWYTPIRR---EWYYEVIIVRVEIN 218 (395)
T ss_dssp HHHHHHHH-SCCC-SCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEE-EEEEECCS---BTTBBCCEEEEEET
T ss_pred HHHHHHHc-cCCc-ceEEEEeccccccccccccccCCCcEEEECCcCcccccCc-eEEeccCC---CceEEEEEEEEEEC
Confidence 24555 4454 8999999752 239999999 4567776 99999986 67999999999999
Q ss_pred ceEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-----CCCcceeccCCC--CccCeEEEEEeC
Q 040562 294 DQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCYSISSR--PRFPEVTIHFRD 366 (427)
Q Consensus 294 ~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-----~~~~~C~~~~~~--~~~P~i~~~f~g 366 (427)
++.+..+........+||||||+++++|++++++|++++.+........ .+..+|+..... ..+|+|+|+|+|
T Consensus 219 g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g 298 (395)
T 2qp8_A 219 GQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMG 298 (395)
T ss_dssp TEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEEC
T ss_pred CEEcccCccccCCceEEEEcCCCcEecCHHHHHHHHHHHhhhcccccCCccccccccccccccccchHhhCCcEEEEEcc
Confidence 9987653321124689999999999999999999999999876433211 235789975321 258999999998
Q ss_pred c------EEEecCCceEEEeCC----CeEEEE--EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 367 A------DVKLSTSNVFMNISE----DLVCSV--FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 367 ~------~~~l~~~~y~~~~~~----~~~C~~--i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
. +++|++++|+++..+ ...|++ +.+.++.||||++|||++|+|||++++|||||+++|+.
T Consensus 299 ~~~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~ 370 (395)
T 2qp8_A 299 EVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 370 (395)
T ss_dssp SSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHHTTEEEEEETTTTEEEEEEETTCC
T ss_pred CCCCceEEEEECHHHhEeecccCCCCCceEEEEEecCCCCcEEEChHHhCCeeEEEECCCCEEEEEeccCCC
Confidence 5 699999999998643 358974 66655789999999999999999999999999999974
No 30
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=4.5e-55 Score=438.67 Aligned_cols=307 Identities=19% Similarity=0.325 Sum_probs=249.9
Q ss_pred ecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCC
Q 040562 85 IPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAE 164 (427)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~ 164 (427)
...+.+|+++|+||||+|+|+|+|||||+++||+|.+| | ..++.|||++|+||+...
T Consensus 70 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c----c--~~~~~y~~~~SsT~~~~~----------------- 126 (455)
T 3lpj_A 70 GKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH----P--FLHRYYQRQLSSTYRDLR----------------- 126 (455)
T ss_dssp EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC----T--TCSCCCCGGGCTTCEEEE-----------------
T ss_pred CCCCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc----c--ccCCcccCCCCCCcccCC-----------------
Confidence 34567899999999999999999999999999999977 4 467899999999999986
Q ss_pred CCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCC--CCCCceEeecCCCCCh-----------
Q 040562 165 GNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS----------- 231 (427)
Q Consensus 165 ~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s----------- 231 (427)
|.|.+.|++|+. .|.+++|+|+|++... +.+ .+.|+++......| ....+||||||++.++
T Consensus 127 --~~~~i~Yg~Gs~-~G~~~~Dtv~ig~~~~--~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~ 200 (455)
T 3lpj_A 127 --KGVYVPYTQGKW-EGELGTDLVSIPHGPN--VTV-RANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFD 200 (455)
T ss_dssp --EEEEEECSSCEE-EEEEEEEEEECTTSCS--CEE-EEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHH
T ss_pred --ccEEEEeCCeEE-EEEEEEEEEEECCCcc--eee-EEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHH
Confidence 899999999998 5999999999985310 122 35788888776655 3678999999997643
Q ss_pred -hHHhhhhhccCceEEEeecC------------CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceE
Q 040562 232 -LISQMKTTIAGKFSYCLVQQ------------SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQR 296 (427)
Q Consensus 232 -l~~ql~~i~~~~Fs~~l~~~------------~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~ 296 (427)
|.+| +.+. ++||+||.+. ..|+|+||| ..++.|+ +.|+|+.. ..+|.|.+++|+|+++.
T Consensus 201 ~L~~q-~~i~-~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~v~g~~ 274 (455)
T 3lpj_A 201 SLVKQ-THVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS-LWYTPIRR---EWYYEVIIVRVEINGQD 274 (455)
T ss_dssp HHHHH-SCCC-SCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEE-EEEEECCS---BTTBBCCEEEEEETTEE
T ss_pred HHHHc-cCCC-ceeEEEeccccccccccccccCCCceEEECCcCcccccCc-eEEEecCC---CceeEEEEeEEEECCEE
Confidence 3444 4454 8999999742 239999999 5667776 99999986 68999999999999998
Q ss_pred eeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-----CCCcceeccCCC--CccCeEEEEEeCc--
Q 040562 297 LGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCYSISSR--PRFPEVTIHFRDA-- 367 (427)
Q Consensus 297 ~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-----~~~~~C~~~~~~--~~~P~i~~~f~g~-- 367 (427)
+...........+||||||++++||++++++|++++.+........ .+.++|+..... ..+|+|+|+|+|.
T Consensus 275 ~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~~ 354 (455)
T 3lpj_A 275 LKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVT 354 (455)
T ss_dssp CCCCGGGGGSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSST
T ss_pred ccccccccCCCeEEEECCCcceeCCHHHHHHHHHHhhhhccccccCcccccCcceecccccCCchhcCCcEEEEEcCCCc
Confidence 8764321135789999999999999999999999999986432211 346789976421 1489999999986
Q ss_pred ----EEEecCCceEEEeCCC----eEEEE--EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 368 ----DVKLSTSNVFMNISED----LVCSV--FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 368 ----~~~l~~~~y~~~~~~~----~~C~~--i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
+++|++++|+++..+. ..|++ +.+.++.||||++|||++|+|||++++|||||+++|+.
T Consensus 355 ~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~ 423 (455)
T 3lpj_A 355 NQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 423 (455)
T ss_dssp TEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHHTTEEEEEETTTTEEEEEEETTCC
T ss_pred CceEEEEECHHHheEeccCCCCCCceEEEEeccCCCCcEEEChHHhCCeEEEEECCCCEEEEEeccccc
Confidence 4999999999987542 58986 44445789999999999999999999999999999975
No 31
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=2.7e-54 Score=427.02 Aligned_cols=305 Identities=19% Similarity=0.335 Sum_probs=246.7
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCCCCCCC
Q 040562 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSCSAEGN 166 (427)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~ 166 (427)
.+.+|+++|+||||||+++|+|||||+++||+|.+|. ..++.|||++|+||+...
T Consensus 26 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~------~~~~~y~~~~SsT~~~~~------------------- 80 (402)
T 3vf3_A 26 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHP------FLHRYYQRQLSSTYRDLR------------------- 80 (402)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCT------TCSCCCCGGGCTTCEEEE-------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCCC------cccCCcCcccCcccccCC-------------------
Confidence 4568999999999999999999999999999999873 467899999999999986
Q ss_pred ceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecC-cEEEEeEeecCCCC--CCCCceEeecCCCCCh--------hHHh
Q 040562 167 CRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALP-EIVFGCGTKNGGKF--NSKTDGIVGLGGGDAS--------LISQ 235 (427)
Q Consensus 167 ~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~-~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s--------l~~q 235 (427)
|.|.+.|++|+. .|.+++|+|+|++.. .+. .+.|+++....+.+ ....+||||||++.++ ++.+
T Consensus 81 ~~~~i~Yg~Gs~-~G~~~~D~v~ig~~~----~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~ 155 (402)
T 3vf3_A 81 KGVYVPYTQGKW-EGELGTDLVSIPHGP----NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDS 155 (402)
T ss_dssp EEEEEECSSCEE-EEEEEEEEEECTTSC----SCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHH
T ss_pred CEEEEEECcEEE-EEEEEEEEEEECCcc----ccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHH
Confidence 899999999997 599999999998531 233 24578877766544 3578999999997543 3333
Q ss_pred h---hhhccCceEEEeecC------------CCceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEee
Q 040562 236 M---KTTIAGKFSYCLVQQ------------SSTKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLG 298 (427)
Q Consensus 236 l---~~i~~~~Fs~~l~~~------------~~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~ 298 (427)
| +.+. ++||+||.+. ..|+|+||| ..++.|+ +.|+|+.. ..+|.|.+++|+|+++.+.
T Consensus 156 L~~q~~i~-~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~w~v~l~~i~v~g~~~~ 230 (402)
T 3vf3_A 156 LVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS-LWYTPIRR---EWYYEVIIVRVEINGQDLK 230 (402)
T ss_dssp HHHHSCCC-SCEEEEECCCC-------------EEEEESSCCGGGEEEE-EEEEECSS---BTTBEECEEEEEETTEECC
T ss_pred HHHccCCc-cceEEEeecccccccccccccCCCCEEEeCCcCcccccCc-eEEEeCCc---CcEEEEEEeEEEECCEEec
Confidence 3 4454 8999999642 129999999 5567776 99999986 6899999999999999887
Q ss_pred eeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCc-----CCCcceeccCCC--CccCeEEEEEeCc----
Q 040562 299 VISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVE-----GPYDLCYSISSR--PRFPEVTIHFRDA---- 367 (427)
Q Consensus 299 ~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~-----~~~~~C~~~~~~--~~~P~i~~~f~g~---- 367 (427)
..........+||||||++++||++++++|++++.+........ .+.++|+..... ..+|+|+|+|+|.
T Consensus 231 ~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~ 310 (402)
T 3vf3_A 231 MDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ 310 (402)
T ss_dssp CCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEECSSTTE
T ss_pred ccccccCCCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCccccccccccccccccchHhhCCceEEEEecCCCCc
Confidence 64321135689999999999999999999999999886422111 346789976321 2589999999986
Q ss_pred --EEEecCCceEEEeCCC----eEEEE--EEeCCCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 368 --DVKLSTSNVFMNISED----LVCSV--FNARDDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 368 --~~~l~~~~y~~~~~~~----~~C~~--i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
+++|++++|+++..+. ..|++ +.+.++.||||++|||++|+|||++++|||||+++|+.
T Consensus 311 ~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~ 377 (402)
T 3vf3_A 311 SFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHV 377 (402)
T ss_dssp EEEEEECHHHHEEECCCGGGTTEEEEEECEEEESSCEEECHHHHTTEEEEEEGGGTEEEEEEETTCC
T ss_pred eEEEEECHHHheehhccCCCCCceEEEEeccCCCCcEEEChHHhCCeEEEEECCCCEEEEEecccCc
Confidence 4999999999987542 58986 44445789999999999999999999999999999985
No 32
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=1.5e-54 Score=425.38 Aligned_cols=314 Identities=21% Similarity=0.417 Sum_probs=241.5
Q ss_pred ecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCC-C--CCCCC
Q 040562 85 IPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAP-P--IKDSC 161 (427)
Q Consensus 85 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~-~--~~~~c 161 (427)
+..+.+|+++|+|||| |+|||||+++||+|.+|. +++.++|.++.|.. + ....|
T Consensus 10 ~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~~------------------~~~~~~C~s~~C~~~~~~~~~sc 66 (381)
T 1t6e_X 10 DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ------------------PPAEIPCSSPTCLLANAYPAPGC 66 (381)
T ss_dssp CTTTCCEEEEEETTEE-----EEEETTCCCEEECCCTTC------------------CCCCCBTTSHHHHHHHSSCCTTC
T ss_pred cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCCC------------------CCCccCCCCchhccccCCCCCCC
Confidence 4678899999999997 999999999999987553 12334444444432 1 01123
Q ss_pred CC--------CCCc-eeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcE----EEEeEeecCC-CCCCCCceEeecCC
Q 040562 162 SA--------EGNC-RYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEI----VFGCGTKNGG-KFNSKTDGIVGLGG 227 (427)
Q Consensus 162 ~~--------~~~~-~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~----~fg~~~~~~~-~~~~~~~GilGLg~ 227 (427)
.. .+.| .|.+.|++|+.+.|++++|+|+|++.++. +.++++ .|||+..... .+....+||||||+
T Consensus 67 ~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~-~~v~~~~~~~~Fg~~~~~~~~~~~~~~dGIlGLg~ 145 (381)
T 1t6e_X 67 PAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGS-KPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLAN 145 (381)
T ss_dssp CCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSS-SEEEEEEEEEEEEECCGGGGTTSCTTEEEEEECSS
T ss_pred CCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCC-ccccceeeeeEeecCcccccCCCCCCCceEEEeCC
Confidence 21 1236 59999999998779999999999863211 255554 6799987632 22367899999999
Q ss_pred CCChhHHhhhh--hccCceEEEeecCCCceeeeCCCC----cccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeec
Q 040562 228 GDASLISQMKT--TIAGKFSYCLVQQSSTKINFGTNG----IVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVIS 301 (427)
Q Consensus 228 ~~~sl~~ql~~--i~~~~Fs~~l~~~~~G~l~fGg~~----~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 301 (427)
+.+++++||.. +.+++||+||.+...|+|+|||.+ ++.|+ +.|+|++.++...+|+|+|++|+|+++.+..+.
T Consensus 146 ~~~s~~~ql~~~~~~~~~FS~~L~~~~~G~l~fGg~~~~~~~~~g~-l~~tPl~~~~~~~~y~v~l~~i~vg~~~~~~~~ 224 (381)
T 1t6e_X 146 SGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQS-MPYTPLVTKGGSPAHYISARSIVVGDTRVPVPE 224 (381)
T ss_dssp STTSHHHHHHHHHTCCSEEEEECCSSSCEEEEESCCSCSCHHHHTT-CCEEECBCCTTCCSCEECEEEEEETTEECCCCT
T ss_pred CcchhHHHHhhhcccCceEEEEeCCCCCeeEEeCCcccccccccCc-ceeeccccCCCCcceEEEEEEEEEcCEEecCCH
Confidence 99999999865 457999999988645999999933 35666 999999976433567799999999999887643
Q ss_pred cCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhcc--------CCC---cCCCcceeccCCC------CccCeEEEEE
Q 040562 302 GSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAA--------QPV---EGPYDLCYSISSR------PRFPEVTIHF 364 (427)
Q Consensus 302 ~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~--------~~~---~~~~~~C~~~~~~------~~~P~i~~~f 364 (427)
..-..+++||||||++++||+++|++|.+++.+++.. ... ...+++|++.+.. ..+|+|+|+|
T Consensus 225 ~~~~~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f 304 (381)
T 1t6e_X 225 GALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGL 304 (381)
T ss_dssp TCSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCCEEEEE
T ss_pred HHccCCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCCcccccCCcCCeEEEEE
Confidence 2111467999999999999999999999999887641 111 1355789976421 2689999999
Q ss_pred eC-cEEEecCCceEEEeCCCeEEEEEEeCC---------CcceechhhhcceEEEEeCCCCEEEEeeCC
Q 040562 365 RD-ADVKLSTSNVFMNISEDLVCSVFNARD---------DIPLYGNIMQTNFLIGYDIEGRTVSFKPTD 423 (427)
Q Consensus 365 ~g-~~~~l~~~~y~~~~~~~~~C~~i~~~~---------~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 423 (427)
+| ++++|++++|+++..++..|++|++.+ +.||||+.|||++|+|||++++|||||+++
T Consensus 305 ~gg~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~ 373 (381)
T 1t6e_X 305 DGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP 373 (381)
T ss_dssp TTSCEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred CCCcEEEeCCCeEEEEcCCCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEeccc
Confidence 85 999999999999876678999987653 479999999999999999999999999865
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=2.7e-54 Score=417.68 Aligned_cols=292 Identities=19% Similarity=0.331 Sum_probs=239.4
Q ss_pred ceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCCCC
Q 040562 82 ADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPPSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKDSC 161 (427)
Q Consensus 82 ~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (427)
.++...+.+|+++|.||||+|++.|+|||||+++||+|. +.|+|++|+++..
T Consensus 5 ~~l~n~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~------------~~y~~s~Ss~~~~---------------- 56 (340)
T 1wkr_A 5 VPATNQLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD------------KSYVKTSTSSATS---------------- 56 (340)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEEEETTCCCCEECSS------------SCCCCCTTCEEEE----------------
T ss_pred EeeeccCcEEEEEEEECCCCcEEEEEEeCCChhheecCC------------CccCCcCCccccC----------------
Confidence 344455779999999999999999999999999999642 4799998886654
Q ss_pred CCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCCCCCCCCceEeecCCCCChh---------
Q 040562 162 SAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGGKFNSKTDGIVGLGGGDASL--------- 232 (427)
Q Consensus 162 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl--------- 232 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||++...+ | ...+||||||++.+++
T Consensus 57 -----~~~~i~Yg~Gs~-~G~~~~Dtv~~g~~-----~v~~~~fg~~~~~~~-~-~~~~GilGLg~~~~s~~~~~~~~~~ 123 (340)
T 1wkr_A 57 -----DKVSVTYGSGSF-SGTEYTDTVTLGSL-----TIPKQSIGVASRDSG-F-DGVDGILGVGPVDLTVGTLSPHTST 123 (340)
T ss_dssp -----EEEEEECSSCEE-EEEEEEEEEEETTE-----EEEEEEEEEEEEEES-C-TTCSEEEECSCGGGGTTSEESCTTC
T ss_pred -----ceEEEEECCcEE-EEEEEEEEEEECCE-----EEcceEEEEEEccCC-C-cCCCcEEECCccccccccccccccc
Confidence 899999999984 59999999999986 899999999998755 4 4689999999976543
Q ss_pred -----HHhh---hhhccCceEEEeecCC-----CceeeeCC--CCcccCCCeeeeccccCCC-CccEEEEeeEEEecc-e
Q 040562 233 -----ISQM---KTTIAGKFSYCLVQQS-----STKINFGT--NGIVSGSGVVSTPLLAKNP-KTFYSLTLDAISVGD-Q 295 (427)
Q Consensus 233 -----~~ql---~~i~~~~Fs~~l~~~~-----~G~l~fGg--~~~~~g~~~~~~p~~~~~~-~~~w~v~l~~i~v~~-~ 295 (427)
+.+| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+...+. ..+|.|. ++|+|++ +
T Consensus 124 ~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~~~~~~~~w~v~-~~i~v~~~~ 201 (340)
T 1wkr_A 124 SIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGS-ITYTPITSTSPASAYWGIN-QSIRYGSST 201 (340)
T ss_dssp CCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSC-CEEEECCSSTTGGGSSEEE-EEEEETTTE
T ss_pred cCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccc-eEEEECccCCCCcceEEEE-eeEEECCCe
Confidence 3333 4567899999998641 29999999 4567776 99999997543 6799999 9999998 7
Q ss_pred EeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCCcCCCcceeccCCCCccCeEEEEEeCcEEEecCCc
Q 040562 296 RLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPVEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSN 375 (427)
Q Consensus 296 ~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~ 375 (427)
.+.. ...+||||||++++||++++++|.+++.+....... .+..+|.... .+|+|+|+|+|.+++|++++
T Consensus 202 ~l~~------~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~~~~g-~~~~~C~~~~---~~p~i~f~f~g~~~~i~~~~ 271 (340)
T 1wkr_A 202 SILS------STAGIVDTGTTLTLIASDAFAKYKKATGAVADNNTG-LLRLTTAQYA---NLQSLFFTIGGQTFELTANA 271 (340)
T ss_dssp EEEE------EEEEEECTTBCSEEECHHHHHHHHHHHTCEECTTTS-SEEECHHHHH---TCCCEEEEETTEEEEECTGG
T ss_pred EccC------CCeEEEeCCcccccCCHHHHHHHHHhhCCEEcCCCC-eEEeeccccc---cCCcEEEEECCEEEEEcHHH
Confidence 7753 458999999999999999999998888765432222 4567798543 67999999999999999999
Q ss_pred eEEEeC-------CCeEEEE-EEeC------CCcceechhhhcceEEEEeCCCCEEEEeeCCCCC
Q 040562 376 VFMNIS-------EDLVCSV-FNAR------DDIPLYGNIMQTNFLIGYDIEGRTVSFKPTDCSK 426 (427)
Q Consensus 376 y~~~~~-------~~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~c~~ 426 (427)
|+++.. +...|+. |.+. +..||||++|||++|+|||++++|||||+++|++
T Consensus 272 yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~ 336 (340)
T 1wkr_A 272 QIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFTT 336 (340)
T ss_dssp GBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTTT
T ss_pred hccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCCC
Confidence 998753 1246765 7652 1469999999999999999999999999999975
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=4.8e-44 Score=328.13 Aligned_cols=219 Identities=26% Similarity=0.444 Sum_probs=188.0
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCC-CCCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCP-PSQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIKD 159 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~-~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 159 (427)
.++.+..+.+|+++|.||||+|++.|+|||||+++||+|..|. +..|. .++.|||++|+|++...
T Consensus 5 ~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------ 70 (239)
T 1b5f_A 5 VALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACR--AHSMYESSDSSTYKENG------------ 70 (239)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHH--TSCCBCGGGCTTCEEEE------------
T ss_pred eeeeecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccC--CCCCCCCccCCCeeeCC------------
Confidence 3455678899999999999999999999999999999999996 33574 57899999999999976
Q ss_pred CCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcCCCCCceecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------
Q 040562 160 SCSAEGNCRYSVSYGDDSFSNGDLATETVTVGSTSGQAVALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------ 231 (427)
Q Consensus 160 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------ 231 (427)
|.|.+.|++|+. .|.+++|+|+|++. .++++.||++....+ .| ....+||||||++.++
T Consensus 71 -------~~~~i~Yg~Gs~-~G~~~~D~v~~g~~-----~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~p~~~~ 137 (239)
T 1b5f_A 71 -------TFGAIIYGTGSI-TGFFSQDSVTIGDL-----VVKEQDFIEATDEADNVFLHRLFDGILGLSFQTISVPVWYN 137 (239)
T ss_dssp -------EEEEEECSSCEE-EEEEEEEEEEETTE-----EEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSSCCHHHH
T ss_pred -------cEEEEEECCCcE-EEEEEEEEEEECCc-----EEccEEEEEEEeccCccccccCcceEEecCccccccHHHHH
Confidence 899999999985 59999999999986 899999999998765 34 4678999999999876
Q ss_pred hHHhhhhhccCceEEEeecCC----CceeeeCC--CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCC
Q 040562 232 LISQMKTTIAGKFSYCLVQQS----STKINFGT--NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNP 305 (427)
Q Consensus 232 l~~ql~~i~~~~Fs~~l~~~~----~G~l~fGg--~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 305 (427)
+++| +.+.+++||+||.+.. .|+|+||| .+++.|+ +.|+|+.. .++|.|.|++|+|+++.+... ..
T Consensus 138 l~~q-g~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~~---~~ 209 (239)
T 1b5f_A 138 MLNQ-GLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGD-HTYVPVTY---QYYWQFGIGDVLIGDKSTGFC---AP 209 (239)
T ss_dssp HHHT-TCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEE-EEEEEEEE---ETTEEEEECCEEETTEECCTT---TT
T ss_pred HHHC-CCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCc-eEEEEccc---CCeEEEEeeEEEECCEEeccc---CC
Confidence 4455 6678899999998752 29999999 4567776 99999986 679999999999999887643 23
Q ss_pred CCcEEEccCCccccccHHHHHHHHHHHHh
Q 040562 306 GGDIVIDSGTTLTYLPPAYASKLLSVMSS 334 (427)
Q Consensus 306 ~~~~iiDSGt~~~~lp~~~~~~i~~~l~~ 334 (427)
...+||||||+++++|++++++|.+++.+
T Consensus 210 ~~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 210 GCQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp CEEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred CCEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 67899999999999999999999998754
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=2.2e-38 Score=291.30 Aligned_cols=213 Identities=22% Similarity=0.372 Sum_probs=176.9
Q ss_pred eecCcEEEEeEeecCC-CC-CCCCceEeecCCCCCh------hHHhh---hhhccCceEEEeecCC----CceeeeCC--
Q 040562 198 VALPEIVFGCGTKNGG-KF-NSKTDGIVGLGGGDAS------LISQM---KTTIAGKFSYCLVQQS----STKINFGT-- 260 (427)
Q Consensus 198 ~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l~~ql---~~i~~~~Fs~~l~~~~----~G~l~fGg-- 260 (427)
++++++.|||++...+ .| ....+||||||++.++ ++++| +.+.+++||+||.+.. .|+|+|||
T Consensus 3 ~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d 82 (241)
T 1lya_B 3 VKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTD 82 (241)
T ss_dssp EEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCC
T ss_pred eEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCcC
Confidence 4889999999999876 35 5678999999998654 33333 4578899999998863 39999999
Q ss_pred CCcccCCCeeeeccccCCCCccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCC
Q 040562 261 NGIVSGSGVVSTPLLAKNPKTFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQP 340 (427)
Q Consensus 261 ~~~~~g~~~~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~ 340 (427)
++++.|+ +.|+|+.. ..+|.|++++|+|+++.+.. ..+..+||||||+++++|++++++|.+++.+....
T Consensus 83 ~~~~~g~-l~~~p~~~---~~~~~v~l~~i~v~~~~~~~----~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~-- 152 (241)
T 1lya_B 83 SKYYKGS-LSYLNVTR---KAYWQVHLDQVEVASGLTLC----KEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLI-- 152 (241)
T ss_dssp GGGEEEE-EEEEECSS---BTTBEEEEEEEEETTSCEES----TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEEE--
T ss_pred HHHcCCc-eEEEECcc---ccEEEEEEeEEEECCeeEec----cCCCEEEEECCCccccCCHHHHHHHHHHhCCeecc--
Confidence 4567776 99999986 78999999999999987532 34678999999999999999999999998765432
Q ss_pred CcCCCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--CeEEEE-EEeC------CCcceechhhhcceEEEEe
Q 040562 341 VEGPYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DLVCSV-FNAR------DDIPLYGNIMQTNFLIGYD 411 (427)
Q Consensus 341 ~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~~C~~-i~~~------~~~~ilG~~fl~~~y~vfD 411 (427)
...+..+|+... .+|+|+|+|+|.+++|++++|+++..+ +..|++ |++. ++.||||++|||++|+|||
T Consensus 153 ~g~~~~~C~~~~---~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD 229 (241)
T 1lya_B 153 QGEYMIPCEKVS---TLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFD 229 (241)
T ss_dssp TTEEEEEGGGGG---GSCCEEEEETTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEEEEE
T ss_pred CCcEEEECCCCc---cCCeEEEEECCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHhcceEEEEE
Confidence 114567898653 689999999999999999999998753 468997 8864 3689999999999999999
Q ss_pred CCCCEEEEeeCC
Q 040562 412 IEGRTVSFKPTD 423 (427)
Q Consensus 412 ~~~~riGfa~~~ 423 (427)
++++|||||+++
T Consensus 230 ~~~~~igfA~~~ 241 (241)
T 1lya_B 230 RDNNRVGFAEAA 241 (241)
T ss_dssp TTTTEEEEEEEC
T ss_pred CCCCEEEEEEcC
Confidence 999999999975
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.90 E-value=5.5e-24 Score=165.30 Aligned_cols=90 Identities=30% Similarity=0.464 Sum_probs=80.2
Q ss_pred cceeecCCccEEEEEEeCCCCcEEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcceeecCCCCCCCCCCC
Q 040562 81 QADIIPNVGEYLIRISIGTPPVEILAVADTGSDLIWTQCQPCPP--SQCYKQDNPLFDPQRSSTYKYLSCSSSQCAPPIK 158 (427)
Q Consensus 81 ~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (427)
.++.+..+.+|+++|.||||||+|.|+|||||+++||+|.+|.. ..| ..++.|||++|+|++...
T Consensus 5 ~~l~n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C--~~~~~y~p~~SsT~~~~~----------- 71 (97)
T 1lya_A 5 EVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIAC--WIHHKYNSDKSSTYVKNG----------- 71 (97)
T ss_dssp EEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHH--HTSCCBCGGGCTTCEEEE-----------
T ss_pred EeeEECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCccccc--CCCCCCCchhCCCceeCC-----------
Confidence 34445788999999999999999999999999999999999972 368 357899999999999986
Q ss_pred CCCCCCCCceeeeeeCCCCeEEEEEEEEEEEEcC
Q 040562 159 DSCSAEGNCRYSVSYGDDSFSNGDLATETVTVGS 192 (427)
Q Consensus 159 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~ig~ 192 (427)
|.|.+.|++|++ .|.+++|+|+|++
T Consensus 72 --------~~~~i~Yg~Gs~-~G~~~~Dtv~i~g 96 (97)
T 1lya_A 72 --------TSFDIHYGSGSL-SGYLSQDTVSVPC 96 (97)
T ss_dssp --------EEEEEECSSCEE-EEEEEEEEEEESC
T ss_pred --------CcEEEEECCcEE-EEEEEEEEEEECC
Confidence 899999999995 5999999999986
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.73 E-value=4.8e-18 Score=129.51 Aligned_cols=77 Identities=16% Similarity=0.326 Sum_probs=66.7
Q ss_pred CCcceeccCCCCccCeEEEEEeCcEEEecCCceEEEeCC--CeEEEE-EEeC-----CCcceechhhhcceEEEEeCCCC
Q 040562 344 PYDLCYSISSRPRFPEVTIHFRDADVKLSTSNVFMNISE--DLVCSV-FNAR-----DDIPLYGNIMQTNFLIGYDIEGR 415 (427)
Q Consensus 344 ~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~y~~~~~~--~~~C~~-i~~~-----~~~~ilG~~fl~~~y~vfD~~~~ 415 (427)
+..+|.... .+|+|+|+|+|.+++|++++|+++... +..|++ |++. ++.||||++|||++|+|||++++
T Consensus 3 y~v~C~~~~---~~P~i~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~ 79 (87)
T 1b5f_B 3 LQVDCNTLS---SMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNL 79 (87)
T ss_dssp CEECGGGGG---GCCCEEEEETTEEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTT
T ss_pred EEEECCCCC---cCCcEEEEECCEEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCC
Confidence 567898653 689999999999999999999998653 368997 8864 25799999999999999999999
Q ss_pred EEEEeeCC
Q 040562 416 TVSFKPTD 423 (427)
Q Consensus 416 riGfa~~~ 423 (427)
|||||+++
T Consensus 80 riGfA~~~ 87 (87)
T 1b5f_B 80 LVGFAEAA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcC
Confidence 99999874
No 38
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.18 Score=41.20 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=60.0
Q ss_pred ccEEEEeeEEEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccCCC----c-CCCcceeccCCCC
Q 040562 281 TFYSLTLDAISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQPV----E-GPYDLCYSISSRP 355 (427)
Q Consensus 281 ~~w~v~l~~i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~~~----~-~~~~~C~~~~~~~ 355 (427)
+++.|. +.|+|+.+ .+++|||.+.+.++.+..+++- +......... + .... +. .
T Consensus 25 ~~~~v~---v~InG~~~----------~~LvDTGAs~s~is~~~a~~lg--l~~~~~~~~~~~a~g~g~~~-~~-----~ 83 (148)
T 2i1a_A 25 PMLYIN---IEINNYPV----------KAFVDTGAQTTIMSTRLAKKTG--LSRMIDKRFIGEARGVGTGK-II-----G 83 (148)
T ss_dssp CCCEEE---EEETTEEE----------EEEECTTCSSCEEEHHHHHHHT--GGGGCBCCCC------------C-----E
T ss_pred ceEEEE---EEECCEEE----------EEEEECCCCccccCHHHHHHcC--CCccCCcceEEEEecCCCcc-cc-----c
Confidence 344444 67788744 4699999999999988877651 1111010000 0 0000 00 0
Q ss_pred ccCeEEEEEeCcEEEecCCceEEEeCCCeEEEEEEeCCCcceechhhhcceEEEEeCCCCEEEEe
Q 040562 356 RFPEVTIHFRDADVKLSTSNVFMNISEDLVCSVFNARDDIPLYGNIMQTNFLIGYDIEGRTVSFK 420 (427)
Q Consensus 356 ~~P~i~~~f~g~~~~l~~~~y~~~~~~~~~C~~i~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa 420 (427)
......+.+++..+.++ +.+.+.+-..|||..||+++-+..|+.++++-|.
T Consensus 84 ~~~~~~i~ig~~~~~~~--------------~~vl~~~~d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 84 RIHQAQVKIETQYIPCS--------------FTVLDTDIDVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp EEEEEEEEETTEEEEEE--------------EEEECSSCSEEECHHHHHHTTCEEETTTTEEEET
T ss_pred EEEEEEEEECCEEecee--------------EEEecCCCCeEecHHHHhhCCEEEECCCCEEEEc
Confidence 11223455555432211 1122222458999999999999999999999885
No 39
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.099 Score=42.79 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=27.0
Q ss_pred CCccEEEEEEeCCCCcEEEEEEEcCCCceeeeC
Q 040562 87 NVGEYLIRISIGTPPVEILAVADTGSDLIWTQC 119 (427)
Q Consensus 87 ~~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~ 119 (427)
..+.+++++.|+ ++++++++|||++.+-+..
T Consensus 23 ~~~~~~v~v~In--G~~~~~LvDTGAs~s~is~ 53 (148)
T 2i1a_A 23 QVPMLYINIEIN--NYPVKAFVDTGAQTTIMST 53 (148)
T ss_dssp CCCCCEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred ccceEEEEEEEC--CEEEEEEEECCCCccccCH
Confidence 456799999999 7899999999999988854
No 40
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=92.01 E-value=0.18 Score=41.25 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=59.3
Q ss_pred EEecceEeeeeccCCCCCcEEEccCCccccccHHHHHHHHHHHHhhhccC---CC-cCCCcceeccCCCCccCeEEEEEe
Q 040562 290 ISVGDQRLGVISGSNPGGDIVIDSGTTLTYLPPAYASKLLSVMSSMIAAQ---PV-EGPYDLCYSISSRPRFPEVTIHFR 365 (427)
Q Consensus 290 i~v~~~~~~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~i~~~l~~~~~~~---~~-~~~~~~C~~~~~~~~~P~i~~~f~ 365 (427)
++||++.+ .+++|||++.+.++.+.++++- +....... .. ......+. ...+...++++
T Consensus 29 ~~Ing~~v----------~~LVDTGAs~s~Is~~~A~rlG--L~~~~~~~~~~~a~g~G~~~~~-----g~v~~~~I~Ig 91 (148)
T 3s8i_A 29 CKVNGHPL----------KAFVDSGAQMTIMSQACAERCN--IMRLVDRRWAGVAKGVGTQRII-----GRVHLAQIQIE 91 (148)
T ss_dssp EEETTEEE----------EEEECTTCSSCEEEHHHHHHTT--CGGGEEGGGCEECCC---CEEE-----EEEEEEEEEET
T ss_pred EEECCEEE----------EEEEeCCCCcEeeCHHHHHHcC--CccccCcceeEEEEcCCccEEE-----EEEEEEEEEEC
Confidence 45777744 4799999999999999988771 11110000 00 00000011 01233344444
Q ss_pred CcEEEecCCceEEEeCCCeEEEE-EEeCC-CcceechhhhcceEEEEeCCCCEEEEeeC
Q 040562 366 DADVKLSTSNVFMNISEDLVCSV-FNARD-DIPLYGNIMQTNFLIGYDIEGRTVSFKPT 422 (427)
Q Consensus 366 g~~~~l~~~~y~~~~~~~~~C~~-i~~~~-~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 422 (427)
+..+ .|-+ +.+.. -..|||..||+.+-.+.|++++++-|...
T Consensus 92 ~~~~---------------~~~~~Vle~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~~ 135 (148)
T 3s8i_A 92 GDFL---------------QCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTT 135 (148)
T ss_dssp TEEE---------------EEEEEEETTCSSSEEECHHHHHHTTCEEETTTTEEECTTT
T ss_pred CEEE---------------EEEEEEeCCCCcCeeccHHHHHhCCEEEEcCCCEEEEccC
Confidence 4322 1323 33322 46899999999999999999999988653
No 41
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=87.31 E-value=0.75 Score=34.61 Aligned_cols=27 Identities=33% Similarity=0.299 Sum_probs=23.8
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 040562 92 LIRISIGTPPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 92 ~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (427)
++.|.|| .|.+.+++|||.+++-+...
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~ 36 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEM 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCC
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEecc
Confidence 5779999 79999999999999999654
No 42
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=87.07 E-value=0.61 Score=35.52 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=23.4
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeee
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQ 118 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~ 118 (427)
-++.|.|| .|.+.+++|||.+++-+.
T Consensus 9 P~v~v~I~--Gq~~e~LLDTGAD~TVl~ 34 (104)
T 1fmb_A 9 PTTIVLIN--DTPLNVLLDTGADTSVLT 34 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEc
Confidence 46789999 799999999999999996
No 43
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=84.45 E-value=1.3 Score=33.32 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=23.8
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 040562 92 LIRISIGTPPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 92 ~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (427)
++.|.|| +|.+.+++|||.+++-+...
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~ 36 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGI 36 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCc
Confidence 5779999 79999999999999999544
No 44
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=82.37 E-value=1.2 Score=34.25 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=26.4
Q ss_pred EEEEEeC---CCCcEEEEEEEcCCCceeeeCCCCC
Q 040562 92 LIRISIG---TPPVEILAVADTGSDLIWTQCQPCP 123 (427)
Q Consensus 92 ~~~i~iG---tP~q~~~l~~DTGS~~~Wv~~~~c~ 123 (427)
.+.|.|| +|+|.+..++|||.+++-+....+.
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~lP 46 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFS 46 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGSC
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccCC
Confidence 5566676 7899999999999999999776544
No 45
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=80.03 E-value=1.6 Score=33.82 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.1
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (427)
=++ |.|| .|.+.+++|||.+++-+...
T Consensus 15 P~v-ikI~--Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 15 EIL-IFVN--GYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EEE-EEET--TEEEEEEECTTCSSCEEEGG
T ss_pred CEE-EEEC--CEEEEEEecCCCCcEEEccc
Confidence 345 9999 79999999999999999653
No 46
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=75.95 E-value=2.6 Score=32.41 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=24.8
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeeeCCCC
Q 040562 92 LIRISIGTPPVEILAVADTGSDLIWTQCQPC 122 (427)
Q Consensus 92 ~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~~c 122 (427)
.+.|.|| .|.+..++|||.+++-+.....
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~~l 39 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIKLEDW 39 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEGGGS
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEecccC
Confidence 5679999 7999999999999999976543
No 47
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=72.68 E-value=3.1 Score=33.78 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=27.0
Q ss_pred CccEEEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 040562 88 VGEYLIRISIGTPPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 88 ~~~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (427)
...|++++.|. .+++++++|||++.+.+...
T Consensus 22 ~~~l~v~~~In--g~~v~~LVDTGAs~s~Is~~ 52 (148)
T 3s8i_A 22 VTMLYINCKVN--GHPLKAFVDSGAQMTIMSQA 52 (148)
T ss_dssp CCCCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred cCEEEEEEEEC--CEEEEEEEeCCCCcEeeCHH
Confidence 45689999998 79999999999999999654
No 48
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=65.96 E-value=7.4 Score=30.81 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=24.6
Q ss_pred cEEEEEEeCCCCcEEEEEEEcCCCceeeeCC
Q 040562 90 EYLIRISIGTPPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 90 ~Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~~ 120 (427)
.-++.+.|+ .|.+.+++|||.+++-+...
T Consensus 22 RP~v~i~I~--G~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 22 EPRITLKVG--GQPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp SSEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CCEEEEEEC--CEEEEEEEeCCCCeEEEccc
Confidence 456779999 79999999999999999543
No 49
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=62.38 E-value=8.2 Score=30.17 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.0
Q ss_pred eCCCCcEEEEEEEcCCCceeeeCCCC
Q 040562 97 IGTPPVEILAVADTGSDLIWTQCQPC 122 (427)
Q Consensus 97 iGtP~q~~~l~~DTGS~~~Wv~~~~c 122 (427)
|| .|.+..++|||.+++-+.....
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~~l 50 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEEDW 50 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETTTS
T ss_pred CC--CEEEEEEecCCCCcEEEecccC
Confidence 66 6888999999999999976543
No 50
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=61.50 E-value=7 Score=33.40 Aligned_cols=27 Identities=33% Similarity=0.260 Sum_probs=23.8
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeC
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQC 119 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~ 119 (427)
-.+.|.|| .|.+.+++|||.+++-+..
T Consensus 9 P~vtv~I~--Gq~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 9 PLVTIRIG--GQLKEALLDTGADDTVIEE 35 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CeEEEEEC--CEEEEEEEecCCCceEEec
Confidence 46789999 7999999999999999943
No 51
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=39.76 E-value=25 Score=29.92 Aligned_cols=27 Identities=33% Similarity=0.260 Sum_probs=23.7
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeeeC
Q 040562 91 YLIRISIGTPPVEILAVADTGSDLIWTQC 119 (427)
Q Consensus 91 Y~~~i~iGtP~q~~~l~~DTGS~~~Wv~~ 119 (427)
=.+.+.|| .|.+..++|||.+++-+..
T Consensus 113 P~~~iki~--Gq~~e~LlDTGAD~TVl~~ 139 (203)
T 3ka2_A 113 PLVTIRIG--GQLKEALLDTGADDTVIEE 139 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CcEEEEEC--CEEEeeeecccCCceeeec
Confidence 46889999 7999999999999999943
No 52
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=34.15 E-value=41 Score=30.81 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=27.2
Q ss_pred eeecCCccEEEE---EEeCC---CCcEEEEEEEcCCCceeeeCC
Q 040562 83 DIIPNVGEYLIR---ISIGT---PPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 83 ~~~~~~~~Y~~~---i~iGt---P~q~~~l~~DTGS~~~Wv~~~ 120 (427)
++....+.|.++ |.||. +.....+++|||++++++|..
T Consensus 187 p~~~~~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lp~~ 230 (329)
T 3c9x_A 187 PVDNSQGFWEFTASGYSVGGGKLNRNSIDGIADTGTTLLLLDDN 230 (329)
T ss_dssp ECBCTTSSCEEEECCEEETTCCCCSCCEEEEECTTCCSEEECHH
T ss_pred EccCCCceEEEEEeeEEECCEeccCCCceEEEECCCCcEeCCHH
Confidence 333345567665 57875 245688999999999999875
No 53
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=32.30 E-value=41 Score=30.67 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=26.1
Q ss_pred eeecCCccEEEE---EEeCC-CCcEEEEEEEcCCCceeeeCC
Q 040562 83 DIIPNVGEYLIR---ISIGT-PPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 83 ~~~~~~~~Y~~~---i~iGt-P~q~~~l~~DTGS~~~Wv~~~ 120 (427)
++....+.|.++ |.||. +.....+++|||++++++|..
T Consensus 183 p~~~~~~~w~v~l~~i~v~~~~~~~~~aiiDSGTs~~~lP~~ 224 (323)
T 1bxo_A 183 GVDNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDS 224 (323)
T ss_dssp ECBCTTSSCEEEEEEEEETTEEEEEEEEEECTTCSSEEECHH
T ss_pred ECCCCCCeEEEEEeeEEECCccCCCceEEEeCCCCceeCCHH
Confidence 333344556554 56775 334578999999999999875
No 54
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=29.84 E-value=48 Score=30.33 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=26.5
Q ss_pred eeecCCccEEEE---EEeCCC---CcEEEEEEEcCCCceeeeCC
Q 040562 83 DIIPNVGEYLIR---ISIGTP---PVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 83 ~~~~~~~~Y~~~---i~iGtP---~q~~~l~~DTGS~~~Wv~~~ 120 (427)
++....+.|.++ |.||.- .....+++|||++++++|..
T Consensus 186 p~~~~~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~ 229 (329)
T 1oew_A 186 AVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPAT 229 (329)
T ss_dssp ECBCTTSSCEEEEEEEEETTSCCEEEEEEEEECTTCCSEEECHH
T ss_pred EccCCCceEEEEEeeEEECCeeccCCCceEEEeCCCCCEECCHH
Confidence 333334556554 678862 34678999999999999875
No 55
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=28.24 E-value=57 Score=29.71 Aligned_cols=38 Identities=32% Similarity=0.360 Sum_probs=26.6
Q ss_pred eeecCCccEEEE---EEeCCC---CcEEEEEEEcCCCceeeeCC
Q 040562 83 DIIPNVGEYLIR---ISIGTP---PVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 83 ~~~~~~~~Y~~~---i~iGtP---~q~~~l~~DTGS~~~Wv~~~ 120 (427)
++....+.|.++ |.||.- .....+++|||++++++|..
T Consensus 182 p~~~~~~~w~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~ 225 (325)
T 1ibq_A 182 DADSSQGYWGFSTDGYSIGDGSSSSSGFSAIADTGTTLILLDDE 225 (325)
T ss_dssp ECBCTTSSCEEEECEEEETTSCCBSCCEEEEECTTCCSEEECHH
T ss_pred EcCCCCceEEEEECcEEECCeeccCCCceEEEeCCCCcEeCCHH
Confidence 333344556554 678752 35678999999999999875
No 56
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=27.85 E-value=52 Score=30.04 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=24.7
Q ss_pred CCccEEE---EEEeCCC--CcEEEEEEEcCCCceeeeCC
Q 040562 87 NVGEYLI---RISIGTP--PVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 87 ~~~~Y~~---~i~iGtP--~q~~~l~~DTGS~~~Wv~~~ 120 (427)
..+.|.+ .|.||.+ .....+++|||++++++|..
T Consensus 191 ~~~~~~v~l~~i~vg~~~~~~~~~~iiDSGTs~~~lP~~ 229 (325)
T 2apr_A 191 SRGWWGITVDRATVGTSTVASSFDGILDTGTTLLILPNN 229 (325)
T ss_dssp TTSSCEEEECEEEETTEEEECCEEEEECTTCSSEEEEHH
T ss_pred CCCEEEEEEeEEEECCEecCCCceEEEecCCccEECCHH
Confidence 3455655 4678762 34568999999999999875
No 57
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=26.67 E-value=59 Score=28.13 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=23.3
Q ss_pred ccEEEE---EEeCCC-----CcEEEEEEEcCCCceeeeCC
Q 040562 89 GEYLIR---ISIGTP-----PVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 89 ~~Y~~~---i~iGtP-----~q~~~l~~DTGS~~~Wv~~~ 120 (427)
+.|.++ |.||.- .....++||||++++++|..
T Consensus 188 ~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~ 227 (239)
T 1b5f_A 188 YYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTA 227 (239)
T ss_dssp TTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECHH
T ss_pred CeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCHH
Confidence 456554 678752 34578999999999999753
No 58
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=23.99 E-value=60 Score=29.57 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=24.3
Q ss_pred CCccEEEE---EEeCC--CCcEEEEEEEcCCCceeeeCC
Q 040562 87 NVGEYLIR---ISIGT--PPVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 87 ~~~~Y~~~---i~iGt--P~q~~~l~~DTGS~~~Wv~~~ 120 (427)
..+.|.++ |.||. +.....+++|||++++++|..
T Consensus 187 ~~~~w~v~l~~i~v~~~~~~~~~~aiiDSGTs~~~lp~~ 225 (323)
T 1izd_A 187 SQGFWGFTADGYSIGSDSSSDSITGIADTGTTLLLLDDS 225 (323)
T ss_dssp TTSSCEEEESEEEETTEEECCCEEEEECTTCCSEEECHH
T ss_pred CCceEEEEECeEEECCcccCCCceEEEeCCCcceeCCHH
Confidence 34556554 46775 234568999999999999875
No 59
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=23.09 E-value=67 Score=27.67 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=23.8
Q ss_pred CccEEE---EEEeCCC----CcEEEEEEEcCCCceeeeCC
Q 040562 88 VGEYLI---RISIGTP----PVEILAVADTGSDLIWTQCQ 120 (427)
Q Consensus 88 ~~~Y~~---~i~iGtP----~q~~~l~~DTGS~~~Wv~~~ 120 (427)
...|.+ .|+||.- .....+++|||++++++|..
T Consensus 98 ~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~ 137 (241)
T 1lya_B 98 KAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVD 137 (241)
T ss_dssp BTTBEEEEEEEEETTSCEESTTCEEEEECTTCSSEEECHH
T ss_pred ccEEEEEEeEEEECCeeEeccCCCEEEEECCCccccCCHH
Confidence 345554 5678752 24568999999999999775
Done!