Query 040567
Match_columns 162
No_of_seqs 108 out of 1058
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 09:39:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1691 emp24/gp25L/p24 family 100.0 1.7E-40 3.7E-45 241.0 19.1 149 14-162 60-210 (210)
2 KOG1692 Putative cargo transpo 100.0 4E-39 8.7E-44 229.8 14.9 148 12-162 53-201 (201)
3 KOG1690 emp24/gp25L/p24 family 100.0 5.6E-38 1.2E-42 224.9 15.9 160 1-162 51-215 (215)
4 KOG1693 emp24/gp25L/p24 family 100.0 2.3E-32 5E-37 196.3 14.0 147 13-160 58-205 (209)
5 PF01105 EMP24_GP25L: emp24/gp 100.0 1.2E-32 2.5E-37 200.7 0.8 145 13-157 36-183 (183)
6 KOG3287 Membrane trafficking p 100.0 2.5E-29 5.4E-34 182.7 15.7 147 14-160 71-227 (236)
7 PF01835 A2M_N: MG2 domain; I 94.8 0.19 4.1E-06 32.6 6.6 51 8-58 30-88 (99)
8 PF07495 Y_Y_Y: Y_Y_Y domain; 92.8 1.2 2.6E-05 26.3 7.3 47 10-58 4-50 (66)
9 smart00557 IG_FLMN Filamin-typ 91.2 1.4 3E-05 28.3 6.5 45 13-57 31-78 (93)
10 PF00630 Filamin: Filamin/ABP2 89.4 1.2 2.5E-05 28.8 5.0 43 14-56 42-91 (101)
11 TIGR03503 conserved hypothetic 88.2 8.1 0.00018 31.6 9.9 53 5-57 233-288 (374)
12 PF09315 DUF1973: Domain of un 88.0 3.7 8.1E-05 30.0 7.2 46 14-59 41-90 (179)
13 PF13897 GOLD_2: Golgi-dynamic 87.7 0.78 1.7E-05 31.9 3.3 24 40-63 104-128 (136)
14 PF05738 Cna_B: Cna protein B- 87.1 1.4 2.9E-05 26.5 3.9 44 15-58 3-48 (70)
15 PF11589 DUF3244: Domain of un 86.1 2.5 5.4E-05 27.9 5.1 47 12-58 46-96 (106)
16 PF12690 BsuPI: Intracellular 83.2 4.2 9.1E-05 25.7 4.9 23 11-33 21-43 (82)
17 PF13620 CarboxypepD_reg: Carb 83.1 1.1 2.5E-05 27.6 2.3 44 15-58 16-59 (82)
18 PRK12634 flgD flagellar basal 82.3 4.8 0.0001 30.5 5.7 44 13-56 121-175 (221)
19 PRK06655 flgD flagellar basal 77.5 8.8 0.00019 29.1 5.8 43 14-56 126-179 (225)
20 PF08372 PRT_C: Plant phosphor 77.4 22 0.00047 25.5 7.4 56 85-140 51-106 (156)
21 PF04151 PPC: Bacterial pre-pe 76.2 4.8 0.00011 24.2 3.5 40 15-54 25-69 (70)
22 PF07125 DUF1378: Protein of u 75.0 5.8 0.00013 23.1 3.2 30 128-159 6-35 (59)
23 PRK05842 flgD flagellar basal 75.0 8.1 0.00017 30.6 5.1 43 14-56 166-221 (295)
24 COG5415 Predicted integral mem 73.8 19 0.00041 27.1 6.5 29 87-115 16-44 (251)
25 PRK15396 murein lipoprotein; P 73.2 20 0.00044 22.5 6.0 46 85-130 24-69 (78)
26 PRK12812 flgD flagellar basal 73.2 13 0.00029 28.8 5.9 43 14-56 141-194 (259)
27 KOG0518 Actin-binding cytoskel 73.1 12 0.00025 34.6 6.1 49 11-59 880-931 (1113)
28 PRK12633 flgD flagellar basal 72.6 14 0.0003 28.2 5.8 42 15-56 130-182 (230)
29 PF13715 DUF4480: Domain of un 72.2 15 0.00033 22.8 5.2 49 2-58 7-55 (88)
30 KOG3202 SNARE protein TLG1/Syn 72.0 37 0.0008 26.0 8.0 66 85-151 151-234 (235)
31 PF04728 LPP: Lipoprotein leuc 70.6 19 0.00041 21.1 5.8 44 87-130 4-47 (56)
32 PRK12813 flgD flagellar basal 69.0 19 0.00041 27.3 5.8 43 14-57 124-175 (223)
33 PRK09973 putative outer membra 67.2 30 0.00065 22.1 5.9 54 85-138 23-76 (85)
34 COG5415 Predicted integral mem 66.2 55 0.0012 24.7 8.8 47 87-140 9-55 (251)
35 KOG2861 Uncharacterized conser 62.5 22 0.00048 29.4 5.4 55 91-151 338-392 (399)
36 PF07835 COX4_pro_2: Bacterial 62.4 24 0.00053 19.5 4.0 28 119-146 14-41 (44)
37 PF10779 XhlA: Haemolysin XhlA 62.0 33 0.00072 20.8 8.8 18 89-106 9-26 (71)
38 PF12669 P12: Virus attachment 55.8 14 0.00031 21.7 2.5 9 152-160 17-25 (58)
39 PF00517 GP41: Retroviral enve 55.7 67 0.0014 23.9 6.6 59 89-147 104-168 (204)
40 PF09753 Use1: Membrane fusion 55.6 91 0.002 23.8 8.4 20 132-152 228-247 (251)
41 PRK09619 flgD flagellar basal 53.9 51 0.0011 24.9 5.8 43 14-57 123-173 (218)
42 PF15417 DUF4624: Domain of un 53.3 68 0.0015 21.7 5.6 57 12-69 58-121 (132)
43 PF14584 DUF4446: Protein of u 52.6 64 0.0014 22.9 5.8 51 79-129 32-82 (151)
44 PF01519 DUF16: Protein of unk 52.5 66 0.0014 21.3 5.9 43 88-130 55-97 (102)
45 PF05377 FlaC_arch: Flagella a 52.3 46 0.001 19.4 5.9 34 88-121 2-35 (55)
46 PF08234 Spindle_Spc25: Chromo 51.8 54 0.0012 20.0 6.3 28 43-70 3-31 (74)
47 PF13860 FlgD_ig: FlgD Ig-like 49.9 60 0.0013 20.0 7.3 20 13-32 24-43 (81)
48 COG1723 Uncharacterized conser 49.7 30 0.00064 27.8 4.0 53 93-151 273-325 (331)
49 TIGR02962 hdxy_isourate hydrox 49.1 38 0.00083 22.7 4.0 44 15-58 20-69 (112)
50 PF04136 Sec34: Sec34-like fam 49.1 94 0.002 22.1 6.9 53 88-140 30-82 (157)
51 PF09116 gp45-slide_C: gp45 sl 49.0 48 0.001 22.3 4.4 41 17-57 25-73 (112)
52 PF07210 DUF1416: Protein of u 48.8 69 0.0015 20.4 6.2 44 15-59 23-66 (85)
53 PHA02650 hypothetical protein; 48.5 26 0.00057 22.0 2.9 32 124-155 42-73 (81)
54 PF03554 Herpes_UL73: UL73 vir 48.3 34 0.00073 21.7 3.4 28 125-152 44-71 (82)
55 PRK00523 hypothetical protein; 48.1 55 0.0012 20.2 4.2 28 131-158 5-32 (72)
56 PF10805 DUF2730: Protein of u 47.3 61 0.0013 21.4 4.8 39 92-130 48-88 (106)
57 PF05371 Phage_Coat_Gp8: Phage 47.0 36 0.00077 19.6 3.0 22 137-158 30-51 (52)
58 PRK15036 hydroxyisourate hydro 46.5 40 0.00087 23.5 3.9 44 15-58 44-94 (137)
59 PHA01750 hypothetical protein 46.2 55 0.0012 19.8 3.9 30 129-158 4-34 (75)
60 PF09323 DUF1980: Domain of un 46.1 33 0.00071 24.9 3.6 33 126-158 27-59 (182)
61 PHA02975 hypothetical protein; 45.5 44 0.00096 20.4 3.4 28 127-154 40-67 (69)
62 PRK01844 hypothetical protein; 44.2 67 0.0015 19.8 4.2 26 133-158 6-31 (72)
63 KOG3091 Nuclear pore complex, 44.0 1.2E+02 0.0025 26.0 6.8 52 88-139 350-401 (508)
64 PF08842 Mfa2: Fimbrillin-A as 43.8 27 0.00058 26.5 3.1 44 14-57 29-78 (283)
65 KOG0518 Actin-binding cytoskel 42.4 72 0.0016 29.8 5.7 52 15-67 790-844 (1113)
66 PF13260 DUF4051: Protein of u 42.1 42 0.00092 19.0 2.8 18 140-157 10-27 (54)
67 PHA03054 IMV membrane protein; 42.0 47 0.001 20.4 3.2 28 126-153 43-70 (72)
68 PHA02819 hypothetical protein; 41.9 50 0.0011 20.3 3.3 29 126-154 41-69 (71)
69 KOG0256 1-aminocyclopropane-1- 41.6 18 0.00038 30.2 1.7 20 40-59 427-446 (471)
70 PF08918 PhoQ_Sensor: PhoQ Sen 41.3 14 0.0003 26.8 1.0 41 17-57 76-119 (180)
71 PF00801 PKD: PKD domain; Int 41.2 72 0.0016 18.7 4.1 51 8-58 6-63 (69)
72 PF10805 DUF2730: Protein of u 40.8 28 0.00061 23.0 2.4 29 130-158 6-34 (106)
73 TIGR02878 spore_ypjB sporulati 40.3 1.2E+02 0.0025 23.3 5.8 23 129-151 198-220 (233)
74 PF09577 Spore_YpjB: Sporulati 40.2 1.7E+02 0.0036 22.4 6.7 24 130-153 198-221 (232)
75 PF04678 DUF607: Protein of un 39.4 1.5E+02 0.0032 21.5 8.8 48 92-139 56-103 (180)
76 PF06196 DUF997: Protein of un 39.0 75 0.0016 20.0 4.0 28 131-158 44-71 (80)
77 PHA03163 hypothetical protein; 38.1 84 0.0018 20.2 4.0 28 125-152 53-80 (92)
78 PF14109 GldH_lipo: GldH lipop 37.6 1.1E+02 0.0024 21.0 5.0 43 15-57 69-116 (131)
79 PF05739 SNARE: SNARE domain; 37.4 83 0.0018 18.1 5.8 45 86-130 4-48 (63)
80 PF08537 NBP1: Fungal Nap bind 36.8 1.2E+02 0.0025 24.5 5.5 41 87-127 183-223 (323)
81 PF10754 DUF2569: Protein of u 36.8 1.5E+02 0.0032 20.7 6.1 30 132-161 54-83 (149)
82 PHA02844 putative transmembran 36.7 70 0.0015 19.9 3.4 26 129-154 46-71 (75)
83 PF05015 Plasmid_killer: Plasm 36.3 45 0.00097 21.4 2.8 34 23-58 49-82 (93)
84 PF12308 Noelin-1: Neurogenesi 36.1 1.3E+02 0.0028 19.8 4.8 35 92-126 39-73 (101)
85 PF03273 Baculo_gp64: Baculovi 36.1 2.7E+02 0.0059 23.7 10.2 41 13-53 158-208 (498)
86 PF14235 DUF4337: Domain of un 36.1 1.6E+02 0.0035 21.0 8.7 66 89-154 69-134 (157)
87 PRK06798 fliD flagellar cappin 35.5 2.7E+02 0.0058 23.4 8.0 41 89-129 382-422 (440)
88 PF02974 Inh: Protease inhibit 34.4 92 0.002 20.2 4.0 33 18-50 64-96 (99)
89 PRK14081 triple tyrosine motif 33.2 2E+02 0.0044 25.7 6.9 23 35-57 436-458 (667)
90 KOG2862 Alanine-glyoxylate ami 32.8 2.2E+02 0.0048 23.2 6.5 87 46-135 211-303 (385)
91 cd05860 Ig4_SCFR Fourth immuno 32.6 75 0.0016 20.9 3.4 18 42-59 73-90 (101)
92 PF08114 PMP1_2: ATPase proteo 32.4 74 0.0016 17.4 2.7 24 137-160 15-38 (43)
93 PHA02955 hypothetical protein; 32.3 51 0.0011 24.8 2.8 25 132-157 180-204 (213)
94 TIGR02542 B_forsyth_147 Bacter 32.0 32 0.00068 23.5 1.5 16 44-59 114-129 (145)
95 PRK14081 triple tyrosine motif 31.8 1.1E+02 0.0023 27.4 5.0 39 18-56 227-265 (667)
96 PF10959 DUF2761: Protein of u 31.7 71 0.0015 20.1 2.9 25 44-68 57-82 (95)
97 PF10528 PA14_2: GLEYA domain; 31.6 28 0.00062 23.3 1.3 18 40-57 9-26 (113)
98 KOG3285 Spindle assembly check 31.6 78 0.0017 23.3 3.5 30 48-78 82-111 (203)
99 PHA03156 hypothetical protein; 31.5 1.2E+02 0.0026 19.5 4.0 28 125-152 52-79 (90)
100 PF11044 TMEMspv1-c74-12: Plec 31.2 80 0.0017 17.5 2.7 18 132-149 8-28 (49)
101 PRK10803 tol-pal system protei 31.1 1.4E+02 0.003 23.1 5.2 39 87-125 62-100 (263)
102 COG3670 Lignostilbene-alpha,be 30.8 1.7E+02 0.0038 24.9 5.9 56 2-57 187-248 (490)
103 PRK14155 heat shock protein Gr 30.7 2.3E+02 0.005 21.2 6.9 38 88-125 22-59 (208)
104 KOG2678 Predicted membrane pro 30.7 2.5E+02 0.0054 21.5 9.0 31 129-159 213-243 (244)
105 PF14524 Wzt_C: Wzt C-terminal 30.4 92 0.002 20.7 3.7 17 14-30 52-68 (142)
106 KOG3491 Predicted membrane pro 30.3 66 0.0014 19.0 2.4 20 132-151 40-59 (65)
107 PF06624 RAMP4: Ribosome assoc 30.2 29 0.00062 20.9 1.0 23 130-152 38-60 (63)
108 PF02927 CelD_N: N-terminal ig 29.8 69 0.0015 20.3 2.8 15 16-30 36-50 (91)
109 TIGR03769 P_ac_wall_RPT actino 29.7 39 0.00085 18.3 1.4 16 42-57 8-23 (41)
110 COG4467 Regulator of replicati 29.2 1.8E+02 0.0039 19.5 5.3 43 87-129 9-51 (114)
111 PF13544 N_methyl_2: Type IV p 28.9 62 0.0013 16.3 2.0 20 127-146 10-29 (31)
112 PF08905 DUF1850: Domain of un 28.8 91 0.002 19.8 3.3 34 23-56 51-85 (91)
113 PF02460 Patched: Patched fami 28.6 1.7E+02 0.0037 26.4 5.9 45 114-158 730-774 (798)
114 PF07086 DUF1352: Protein of u 28.5 2E+02 0.0043 21.2 5.3 34 113-146 20-53 (186)
115 PF03408 Foamy_virus_ENV: Foam 28.3 2.4E+02 0.0051 25.9 6.5 47 113-159 44-90 (981)
116 PRK11403 hypothetical protein; 28.3 1.1E+02 0.0024 20.6 3.5 26 123-148 59-84 (113)
117 PF11346 DUF3149: Protein of u 28.2 1.1E+02 0.0024 16.7 3.8 23 127-149 8-30 (42)
118 PF04109 APG9: Autophagy prote 28.2 1.3E+02 0.0029 24.6 4.8 36 116-151 107-142 (370)
119 PF14654 Epiglycanin_C: Mucin, 27.9 1.1E+02 0.0024 20.1 3.4 28 132-159 22-49 (106)
120 PF06363 Picorna_P3A: Picornav 27.9 1.8E+02 0.0038 18.9 6.9 39 109-147 51-89 (100)
121 PF06156 DUF972: Protein of un 27.8 1.9E+02 0.0041 19.2 5.7 20 89-108 11-30 (107)
122 PF15072 DUF4539: Domain of un 27.8 66 0.0014 20.5 2.4 16 12-27 17-32 (86)
123 PF13464 DUF4115: Domain of un 27.7 1.5E+02 0.0032 18.0 4.7 42 14-57 7-48 (77)
124 PRK14163 heat shock protein Gr 27.6 2.7E+02 0.0059 21.0 6.9 43 87-129 48-90 (214)
125 PF01166 TSC22: TSC-22/dip/bun 27.3 1.4E+02 0.0031 17.6 4.5 34 82-115 10-43 (59)
126 KOG2096 WD40 repeat protein [G 27.3 1.5E+02 0.0033 24.1 4.7 49 11-59 238-292 (420)
127 cd07666 BAR_SNX7 The Bin/Amphi 27.1 2.2E+02 0.0049 21.9 5.6 53 87-139 55-107 (243)
128 PF14686 fn3_3: Polysaccharide 27.1 1.3E+02 0.0027 19.5 3.7 43 14-56 22-69 (95)
129 PF10029 DUF2271: Predicted pe 27.1 2.2E+02 0.0048 19.8 5.2 26 45-70 94-120 (139)
130 PRK10351 holo-(acyl carrier pr 26.7 2.1E+02 0.0045 21.1 5.2 55 19-83 43-97 (187)
131 PRK14154 heat shock protein Gr 26.3 2.9E+02 0.0062 20.8 6.9 50 87-136 60-109 (208)
132 PF09425 CCT_2: Divergent CCT 26.1 39 0.00084 16.7 0.8 10 151-160 7-16 (27)
133 KOG1924 RhoA GTPase effector D 26.0 1.7E+02 0.0038 26.8 5.3 50 93-142 365-414 (1102)
134 cd07624 BAR_SNX7_30 The Bin/Am 25.9 2.7E+02 0.0059 20.4 6.5 53 87-139 15-67 (200)
135 PF12932 Sec16: Vesicle coat t 25.8 1.7E+02 0.0037 19.5 4.3 41 94-140 73-113 (118)
136 PF06398 Pex24p: Integral pero 25.3 3.4E+02 0.0073 21.8 6.7 24 90-113 113-136 (359)
137 PF11166 DUF2951: Protein of u 25.3 2E+02 0.0044 18.8 8.5 39 116-156 58-96 (98)
138 PRK13415 flagella biosynthesis 25.2 1.1E+02 0.0024 23.2 3.5 36 124-159 57-92 (219)
139 PRK00965 tetrahydromethanopter 25.0 1E+02 0.0022 20.2 2.9 22 87-108 32-53 (96)
140 PF11763 DIPSY: Cell-wall adhe 24.9 2.3E+02 0.005 19.3 7.2 53 11-63 23-86 (123)
141 cd00028 B_lectin Bulb-type man 24.9 1.8E+02 0.004 19.0 4.3 38 15-52 30-70 (116)
142 COG4062 MtrB Tetrahydromethano 24.4 1.1E+02 0.0024 20.2 2.9 23 87-109 32-54 (108)
143 PF05440 MtrB: Tetrahydrometha 24.3 1.1E+02 0.0023 20.1 2.9 22 87-108 31-52 (97)
144 PF15237 PTRF_SDPR: PTRF/SDPR 24.3 3.4E+02 0.0073 21.0 6.3 44 91-134 7-50 (246)
145 cd07628 BAR_Atg24p The Bin/Amp 24.1 2.9E+02 0.0062 20.1 6.3 52 88-139 6-57 (185)
146 PF10256 Erf4: Golgin subfamil 24.1 2.2E+02 0.0048 18.8 5.2 34 125-158 48-81 (118)
147 PF00957 Synaptobrevin: Synapt 24.0 1.9E+02 0.0041 18.0 9.8 31 102-132 33-63 (89)
148 smart00704 ZnF_CDGSH CDGSH-typ 24.0 95 0.0021 16.5 2.2 20 38-57 3-22 (38)
149 TIGR01837 PHA_granule_1 poly(h 24.0 51 0.0011 22.2 1.5 23 83-105 93-115 (118)
150 PF07086 DUF1352: Protein of u 23.7 1.6E+02 0.0035 21.7 4.1 55 101-156 119-173 (186)
151 smart00108 B_lectin Bulb-type 23.3 2.1E+02 0.0045 18.6 4.4 38 15-52 29-69 (114)
152 PF04234 CopC: CopC domain; I 23.3 87 0.0019 20.1 2.4 44 15-58 34-83 (97)
153 COG1382 GimC Prefoldin, chaper 22.8 2.6E+02 0.0056 19.1 5.4 42 86-127 70-111 (119)
154 TIGR03142 cytochro_ccmI cytoch 22.8 2.4E+02 0.0052 18.8 6.3 19 107-125 58-76 (117)
155 PF09771 Tmemb_18A: Transmembr 22.8 2.6E+02 0.0057 19.2 4.9 44 109-152 6-49 (125)
156 PF07116 DUF1372: Protein of u 22.4 1.7E+02 0.0037 19.4 3.5 30 124-153 6-35 (104)
157 PF11945 WASH_WAHD: WAHD domai 22.2 3E+02 0.0064 21.9 5.6 44 86-132 18-61 (297)
158 PF07963 N_methyl: Prokaryotic 22.0 85 0.0018 14.3 1.5 12 133-144 3-14 (20)
159 KOG2604 Subunit of cis-Golgi t 21.9 3.3E+02 0.0072 24.4 6.2 40 100-139 133-172 (733)
160 PRK13169 DNA replication intia 21.9 2.6E+02 0.0056 18.7 5.8 19 89-107 11-29 (110)
161 PF11974 MG1: Alpha-2-macroglo 21.8 2.1E+02 0.0045 18.4 4.0 39 15-53 30-69 (97)
162 PF03558 TBSV_P22: TBSV core p 21.8 3.2E+02 0.0069 19.7 6.2 58 20-77 84-154 (189)
163 PF04279 IspA: Intracellular s 21.6 1.9E+02 0.0042 20.9 4.2 36 123-158 140-175 (176)
164 cd05864 Ig2_VEGFR-2 Second imm 21.5 1.2E+02 0.0026 18.0 2.7 16 44-59 44-59 (70)
165 PF07680 DoxA: TQO small subun 21.5 2.3E+02 0.005 19.7 4.3 44 14-58 47-99 (133)
166 PRK14143 heat shock protein Gr 21.4 3.8E+02 0.0083 20.6 7.1 38 88-125 76-113 (238)
167 KOG0810 SNARE protein Syntaxin 21.3 4.1E+02 0.009 21.1 6.2 21 86-106 206-226 (297)
168 PF09325 Vps5: Vps5 C terminal 21.0 3.5E+02 0.0076 19.9 5.8 52 88-139 26-77 (236)
169 PRK14147 heat shock protein Gr 20.8 3.4E+02 0.0073 19.7 6.8 41 88-128 27-67 (172)
170 cd07237 BphC1-RGP6_C_like C-te 20.8 1.1E+02 0.0024 21.1 2.8 15 14-28 112-126 (154)
171 PF13874 Nup54: Nucleoporin co 20.7 3E+02 0.0064 19.0 8.0 55 84-138 42-97 (141)
172 PHA02706 hypothetical protein; 20.7 80 0.0017 17.9 1.6 12 149-160 27-38 (58)
173 PF10669 Phage_Gp23: Protein g 20.4 2.7E+02 0.0058 18.3 4.2 26 122-147 13-38 (121)
174 cd07244 FosA FosA, a Fosfomyci 20.4 1.1E+02 0.0024 19.7 2.6 14 15-28 92-105 (121)
175 PF14089 KbaA: KinB-signalling 20.2 1.1E+02 0.0023 22.5 2.5 23 133-155 157-179 (180)
176 cd03778 MATH_TRAF2 Tumor Necro 20.2 1.9E+02 0.0042 20.8 3.9 35 41-76 48-86 (164)
177 PF09430 DUF2012: Protein of u 20.1 2.1E+02 0.0046 19.2 3.9 35 34-69 27-61 (123)
No 1
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-40 Score=240.97 Aligned_cols=149 Identities=55% Similarity=0.917 Sum_probs=142.8
Q ss_pred ceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecC--CCCCCceEEEEEEeeeCCcccchhhhhhccccchH
Q 040567 14 HKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSP--EHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMM 91 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~--~~~~~~~~~v~~~~~~g~~~~~~~~~a~~~~~~~l 91 (162)
+.+++.|+||.|+.+++.++..+|+|+|++.++|.|.+||.+. .+.+.....|.|++..|.+++||+++|++++++|+
T Consensus 60 ~~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~ 139 (210)
T KOG1691|consen 60 HKLSVKVTSPYGNNLHSKENVTKGQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPL 139 (210)
T ss_pred ceEEEEEEcCCCceeehhhccccceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHH
Confidence 7899999999999999999999999999999999999999994 44344458999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccC
Q 040567 92 ELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162 (162)
Q Consensus 92 ~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~kkli 162 (162)
+..+.+|++.+..|.++.-|+|.||++.|+++|+||+||.|+|++.++++++++.||++|||+||++||||
T Consensus 140 E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKLI 210 (210)
T KOG1691|consen 140 EVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKKLI 210 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
No 2
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-39 Score=229.85 Aligned_cols=148 Identities=30% Similarity=0.518 Sum_probs=135.5
Q ss_pred CCceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCCC-CCceEEEEEEeeeCCcccchhhhhhccccch
Q 040567 12 DTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN-PPATVTVEFEWKTGVVSKDWTKVAKKGQVDM 90 (162)
Q Consensus 12 ~~~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v~~~~~~g~~~~~~~~~a~~~~~~~ 90 (162)
+-+++++.|++|+|+.++..+..+.|+|+|+++.+|.|++||+|..+. +++. |.|+++.|+.+. +++.++.++.++
T Consensus 53 g~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~~s~mtpk~--V~F~ihvg~~~~-~~d~~~d~~~~~ 129 (201)
T KOG1692|consen 53 GFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNKMSTMTPKT--VMFTIHVGHAPQ-RDDLAKDAHQNK 129 (201)
T ss_pred CccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCCCCCCCceE--EEEEEEEeeccc-cchhcccccccH
Confidence 556899999999999999999999999999999999999999999986 5665 557777776654 445788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccC
Q 040567 91 MELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162 (162)
Q Consensus 91 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~kkli 162 (162)
|+..+.+|.+.|..++.||+|+..|+++||.++|+|++||.|||++|.++|++++++|||||||||+.|++.
T Consensus 130 L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvkrvv 201 (201)
T KOG1692|consen 130 LEEMIRELSEALTSVKHEQEYMEARERIHRNTNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVKRVV 201 (201)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhheeeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863
No 3
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-38 Score=224.86 Aligned_cols=160 Identities=25% Similarity=0.342 Sum_probs=145.5
Q ss_pred CcCCCCCCCCCCCc-eEEEEEECCCCC--eEEeccccccccEEEEeeccCcEEEEEecCCCC--CCceEEEEEEeeeCCc
Q 040567 1 VVNPNEGYPLPDTH-KLTVKVTSPYGN--SYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN--PPATVTVEFEWKTGVV 75 (162)
Q Consensus 1 ~~~~~~~~~~~~~~-~i~~~i~~p~g~--~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~--~~~~~~v~~~~~~g~~ 75 (162)
++|+..++|...++ ++.+.|.+|.++ +|+++.+.++|+|+|++..+|+|++|+.+..+. .+...+|.++++.|.+
T Consensus 51 lyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~ 130 (215)
T KOG1690|consen 51 LYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDH 130 (215)
T ss_pred eecchhcccccCCCceEEEEeecCCCCceEEEeecCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCch
Confidence 57888998886555 899999999888 899999999999999999999999999988764 5667799999999998
Q ss_pred ccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040567 76 SKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTF 155 (162)
Q Consensus 76 ~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~f 155 (162)
+.++..+ ++..+.++.++..|.+++..|+.||.++|.||+++|++.||+|+|++|||++|+++|+++|+||+.+||+|
T Consensus 131 a~l~a~~--ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~F 208 (215)
T KOG1690|consen 131 ANLDAQI--KETDKLLEGRVRQLNSRLESIRKEQNLQREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSF 208 (215)
T ss_pred hhhhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 8776543 45667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccC
Q 040567 156 FERKKLL 162 (162)
Q Consensus 156 F~~kkli 162 (162)
|.++|++
T Consensus 209 FvkqKlv 215 (215)
T KOG1690|consen 209 FVKQKLV 215 (215)
T ss_pred HHHhhcC
Confidence 9999985
No 4
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-32 Score=196.29 Aligned_cols=147 Identities=20% Similarity=0.355 Sum_probs=129.6
Q ss_pred CceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCCCCCceEEEEEEeeeCCcccchhhhh-hccccchH
Q 040567 13 THKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSKDWTKVA-KKGQVDMM 91 (162)
Q Consensus 13 ~~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~~~~v~~~~~~g~~~~~~~~~a-~~~~~~~l 91 (162)
.-+|++.|.+|+|++++...++..+.|.|+++..|+|++||+|.++. ..+..++++++.|.+++-.+... ....++.+
T Consensus 58 ~fDVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~fCFsN~fst-f~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~m 136 (209)
T KOG1693|consen 58 HFDVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYTFCFSNEFST-FSHKIVYMDFQVGEEPPLHPAVSNRDTALTQM 136 (209)
T ss_pred ceeeEEEEECCCCCEEeeccccccccEEEEEecceEEEEEecCcccc-ccceEeeehhhhccccccCccccccchHHHHH
Confidence 34999999999999999999999999999999999999999999887 34446778887776554333321 22346789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcc
Q 040567 92 ELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKK 160 (162)
Q Consensus 92 ~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~kk 160 (162)
+..+..|+..|+.|.+.|.|.|.||.+.+.+++|+++||.|||++++++++++++.||+.||.||..|+
T Consensus 137 ena~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r 205 (209)
T KOG1693|consen 137 ENAIVEIHRALNKIDDTQTYYRLREARNRSTVESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRR 205 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999886
No 5
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=99.97 E-value=1.2e-32 Score=200.70 Aligned_cols=145 Identities=34% Similarity=0.562 Sum_probs=5.6
Q ss_pred CceEEEEEE--CCCCCeEEecccc-ccccEEEEeeccCcEEEEEecCCCCCCceEEEEEEeeeCCcccchhhhhhccccc
Q 040567 13 THKLTVKVT--SPYGNSYHQGDHV-ESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVD 89 (162)
Q Consensus 13 ~~~i~~~i~--~p~g~~v~~~~~~-~~g~~~f~~~~~G~y~~Cf~n~~~~~~~~~~v~~~~~~g~~~~~~~~~a~~~~~~ 89 (162)
..++++.|+ +|+|+.++..... ++|.|+|+++++|+|++||+|+.+.......|.|+++.|.++.++.+.+++++++
T Consensus 36 ~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~iCf~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 115 (183)
T PF01105_consen 36 AYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQICFDNSSSSFSPSKRVSFDIDVGNENKDYKNVAKKEHLD 115 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEEEEEcCCCCccccEEEEEEEEEeecccchhhhhhhhhhh
Confidence 468999999 5666899888655 4579999999999999999999887211266778888887666667788899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 040567 90 MMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFE 157 (162)
Q Consensus 90 ~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~ 157 (162)
+++..|++|...++.+.++|+|++.|+.+|+.+++++++|+++|+++++++++++++||+++||+||+
T Consensus 116 ~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~i~~~si~~~~vli~~~~~Qv~~lk~~f~ 183 (183)
T PF01105_consen 116 PLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSRIMWWSIIQIVVLILVSVWQVYYLKKFFK 183 (183)
T ss_dssp --------------------------------------------------------------HHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999996
No 6
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.5e-29 Score=182.68 Aligned_cols=147 Identities=20% Similarity=0.355 Sum_probs=125.7
Q ss_pred ceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCCC-CCceEEEEEEe-eeCCc---ccchhhhhhc---
Q 040567 14 HKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN-PPATVTVEFEW-KTGVV---SKDWTKVAKK--- 85 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v~~~~-~~g~~---~~~~~~~a~~--- 85 (162)
.+|+|++.+|.|.++.+...+.+|.+++.+.++|.|++||+|++|+ ..|.+-++|-+ ..|+. +..|.+.++.
T Consensus 71 l~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~CfDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~ 150 (236)
T KOG3287|consen 71 LDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVCFDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQ 150 (236)
T ss_pred cceeeEEeCCCccEEeecccccCceeEeeccCCcceEEEEcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhh
Confidence 5899999999999999999999999999999999999999999998 55554444422 22332 2334443322
Q ss_pred --cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcc
Q 040567 86 --GQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKK 160 (162)
Q Consensus 86 --~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~kk 160 (162)
..++.+++.++++...+..+...|..+|.||.|+|.+.+|++.||.|||++|+++||+++++||++||++|..|+
T Consensus 151 Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~ 227 (236)
T KOG3287|consen 151 LDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKS 227 (236)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCC
Confidence 246889999999999999999999999999999999999999999999999999999999999999999999875
No 7
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=94.80 E-value=0.19 Score=32.64 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=33.8
Q ss_pred CCCCCCceEEEEEECCCCCeEEeccc---cccccEEE--Eee---ccCcEEEEEecCCC
Q 040567 8 YPLPDTHKLTVKVTSPYGNSYHQGDH---VESGNFAF--TAA---EAGDYTACFWSPEH 58 (162)
Q Consensus 8 ~~~~~~~~i~~~i~~p~g~~v~~~~~---~~~g~~~f--~~~---~~G~y~~Cf~n~~~ 58 (162)
...|....+.+.|+||+|+.+..... ...|.+++ ..+ ..|.|++-+.....
T Consensus 30 ~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~ 88 (99)
T PF01835_consen 30 FKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDD 88 (99)
T ss_dssp CSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTT
T ss_pred cccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccC
Confidence 44556679999999999999987655 23554443 332 25888888887543
No 8
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=92.78 E-value=1.2 Score=26.31 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=33.7
Q ss_pred CCCCceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCC
Q 040567 10 LPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEH 58 (162)
Q Consensus 10 ~~~~~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 58 (162)
.|......+.+.+.++.-+......+ .++|+...+|.|+|.+.....
T Consensus 4 ~~~~~~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~~ 50 (66)
T PF07495_consen 4 NPENIRYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKDN 50 (66)
T ss_dssp CCTTEEEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEET
T ss_pred CCCceEEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEECC
Confidence 44555788888888887766554433 899999999999999887654
No 9
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=91.18 E-value=1.4 Score=28.32 Aligned_cols=45 Identities=29% Similarity=0.401 Sum_probs=32.3
Q ss_pred CceEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCC
Q 040567 13 THKLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPE 57 (162)
Q Consensus 13 ~~~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 57 (162)
+..+.+.|.+|+|+.+--. .+..+| ..+|++.+.|.|.+.+.-..
T Consensus 31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 4579999999999654322 233445 45688899999998887664
No 10
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=89.36 E-value=1.2 Score=28.75 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=27.6
Q ss_pred ceEEEEEECCCCC----eEE-ecccccccc--EEEEeeccCcEEEEEecC
Q 040567 14 HKLTVKVTSPYGN----SYH-QGDHVESGN--FAFTAAEAGDYTACFWSP 56 (162)
Q Consensus 14 ~~i~~~i~~p~g~----~v~-~~~~~~~g~--~~f~~~~~G~y~~Cf~n~ 56 (162)
..+.+.|.+|+|. .+. .-.+..+|. .+|++++.|.|++++.-.
T Consensus 42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~ 91 (101)
T PF00630_consen 42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN 91 (101)
T ss_dssp SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence 4678888899886 322 222234454 457778888888877654
No 11
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=88.17 E-value=8.1 Score=31.62 Aligned_cols=53 Identities=15% Similarity=0.055 Sum_probs=33.0
Q ss_pred CCCCCCCCCceEEEEEECCCCCeEEeccccccccEEEEe---eccCcEEEEEecCC
Q 040567 5 NEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTA---AEAGDYTACFWSPE 57 (162)
Q Consensus 5 ~~~~~~~~~~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~---~~~G~y~~Cf~n~~ 57 (162)
+.+--.|++-.+++.+++|+|..........++...+.. .+.|.|++-..--.
T Consensus 233 d~~~i~~~s~~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~~~ 288 (374)
T TIGR03503 233 DAGHIDPGSLVIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGTVFG 288 (374)
T ss_pred ccceeccccEEEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEEEEE
Confidence 333344566689999999999854444444444444433 46789987655443
No 12
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=87.96 E-value=3.7 Score=30.00 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=30.7
Q ss_pred ceEEEEEECCCCCeEEe-ccccccc--cEEEE-eeccCcEEEEEecCCCC
Q 040567 14 HKLTVKVTSPYGNSYHQ-GDHVESG--NFAFT-AAEAGDYTACFWSPEHN 59 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v~~-~~~~~~g--~~~f~-~~~~G~y~~Cf~n~~~~ 59 (162)
....+.+.+|+|+.+.. ..+.... .+... ..+.|.+++++.|..+.
T Consensus 41 ~~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~ 90 (179)
T PF09315_consen 41 SPPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSS 90 (179)
T ss_pred CCceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCC
Confidence 35678899999999876 2222233 33332 25689999999777654
No 13
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=87.72 E-value=0.78 Score=31.87 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=19.7
Q ss_pred EEEeeccCcEEEEEecCCCC-CCce
Q 040567 40 AFTAAEAGDYTACFWSPEHN-PPAT 63 (162)
Q Consensus 40 ~f~~~~~G~y~~Cf~n~~~~-~~~~ 63 (162)
++.++.+|.|-++|+|+.|. ..|.
T Consensus 104 s~~c~~~GvYvLkFDNSYS~~rsK~ 128 (136)
T PF13897_consen 104 SHTCPGPGVYVLKFDNSYSWFRSKK 128 (136)
T ss_pred EEECCCCeEEEEEeeCcceeEEeeE
Confidence 56788999999999999886 4444
No 14
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=87.07 E-value=1.4 Score=26.49 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=36.6
Q ss_pred eEEEEEECCCCCeEEe--ccccccccEEEEeeccCcEEEEEecCCC
Q 040567 15 KLTVKVTSPYGNSYHQ--GDHVESGNFAFTAAEAGDYTACFWSPEH 58 (162)
Q Consensus 15 ~i~~~i~~p~g~~v~~--~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 58 (162)
++.|.|++.+|..... ..-...|.+.|.--..|.|.+=......
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~ 48 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD 48 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence 5889999999998875 4445789999999999999999887443
No 15
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=86.05 E-value=2.5 Score=27.93 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=31.4
Q ss_pred CCceEEEEEECCCCCeEEeccccc--cccEEEEe--eccCcEEEEEecCCC
Q 040567 12 DTHKLTVKVTSPYGNSYHQGDHVE--SGNFAFTA--AEAGDYTACFWSPEH 58 (162)
Q Consensus 12 ~~~~i~~~i~~p~g~~v~~~~~~~--~g~~~f~~--~~~G~y~~Cf~n~~~ 58 (162)
+-.++++.|+|.+|+++|++.-.. ....++.. ..+|.|.+=+.+...
T Consensus 46 ~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g 96 (106)
T PF11589_consen 46 PIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG 96 (106)
T ss_dssp --SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred CCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence 345799999999999999875433 22455555 568999999998865
No 16
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=83.23 E-value=4.2 Score=25.70 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=15.4
Q ss_pred CCCceEEEEEECCCCCeEEeccc
Q 040567 11 PDTHKLTVKVTSPYGNSYHQGDH 33 (162)
Q Consensus 11 ~~~~~i~~~i~~p~g~~v~~~~~ 33 (162)
++++..+|.|+|++|+.++....
T Consensus 21 ~sgq~~D~~v~d~~g~~vwrwS~ 43 (82)
T PF12690_consen 21 PSGQRYDFVVKDKEGKEVWRWSD 43 (82)
T ss_dssp SSS--EEEEEE-TT--EEEETTT
T ss_pred CCCCEEEEEEECCCCCEEEEecC
Confidence 58899999999999999997653
No 17
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=83.06 E-value=1.1 Score=27.58 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=30.3
Q ss_pred eEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCC
Q 040567 15 KLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEH 58 (162)
Q Consensus 15 ~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 58 (162)
+..+.+.+.++.......-..+|.|.|..-.+|.|.+-+.-...
T Consensus 16 ~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 16 GATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGY 59 (82)
T ss_dssp T-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTE
T ss_pred CEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCc
Confidence 67888888877776665556799999996667999999876654
No 18
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=82.31 E-value=4.8 Score=30.47 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=33.8
Q ss_pred CceEEEEEECCCCCeEEecc--ccccccEEEEeec---------cCcEEEEEecC
Q 040567 13 THKLTVKVTSPYGNSYHQGD--HVESGNFAFTAAE---------AGDYTACFWSP 56 (162)
Q Consensus 13 ~~~i~~~i~~p~g~~v~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n~ 56 (162)
...+.+.|+|.+|++|+... ..+.|.+.|.... +|.|.+.+.-.
T Consensus 121 a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a~ 175 (221)
T PRK12634 121 AGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQT 175 (221)
T ss_pred CCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence 34799999999999998754 3457888887633 58999999643
No 19
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=77.48 E-value=8.8 Score=29.13 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=32.6
Q ss_pred ceEEEEEECCCCCeEEeccc--cccccEEEEe---------eccCcEEEEEecC
Q 040567 14 HKLTVKVTSPYGNSYHQGDH--VESGNFAFTA---------AEAGDYTACFWSP 56 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v~~~~~--~~~g~~~f~~---------~~~G~y~~Cf~n~ 56 (162)
..+.+.|+|.+|++|+.... .+.|.+.|.. -.+|.|.+-+...
T Consensus 126 ~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 126 DNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS 179 (225)
T ss_pred cEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence 37999999999999986532 4577777754 3378998888654
No 20
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=77.44 E-value=22 Score=25.49 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 040567 85 KGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVV 140 (162)
Q Consensus 85 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~v 140 (162)
+..-+.+..+.++|.+....++.-.......-+|.+.+..=..-+.++..++-+++
T Consensus 51 ~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv 106 (156)
T PF08372_consen 51 SRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLV 106 (156)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHH
Confidence 34456788888999999888888888888888888888776555555544444433
No 21
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=76.24 E-value=4.8 Score=24.18 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=28.5
Q ss_pred eEEEEEECCCCCeEEeccccc-----cccEEEEeeccCcEEEEEe
Q 040567 15 KLTVKVTSPYGNSYHQGDHVE-----SGNFAFTAAEAGDYTACFW 54 (162)
Q Consensus 15 ~i~~~i~~p~g~~v~~~~~~~-----~g~~~f~~~~~G~y~~Cf~ 54 (162)
+.++.+++++|..+......+ .....|+++.+|.|-+=+.
T Consensus 25 d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V~ 69 (70)
T PF04151_consen 25 DADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRVY 69 (70)
T ss_dssp SEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEEE
T ss_pred CeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEEE
Confidence 677899999988776633222 3457788899999987543
No 22
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=74.99 E-value=5.8 Score=23.06 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 040567 128 SRMASLGFISLVVCLSVAALQIWHLKTFFERK 159 (162)
Q Consensus 128 ~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~k 159 (162)
.-++||+.+-+++.++.+.|- .+|.||++|
T Consensus 6 ~~lLyFctvVcaLYLvsGGyk--~IRnY~r~K 35 (59)
T PF07125_consen 6 TILLYFCTVVCALYLVSGGYK--VIRNYFRRK 35 (59)
T ss_pred HHHHHHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence 446788888888888888874 578888876
No 23
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=74.96 E-value=8.1 Score=30.60 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=32.3
Q ss_pred ceEEEEEECCCCCeEEecccc----ccccEEEEee---------ccCcEEEEEecC
Q 040567 14 HKLTVKVTSPYGNSYHQGDHV----ESGNFAFTAA---------EAGDYTACFWSP 56 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v~~~~~~----~~g~~~f~~~---------~~G~y~~Cf~n~ 56 (162)
..+.+.|+|.+|++|+.-... +.|.+.|... .+|.|+|-+...
T Consensus 166 ~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a~ 221 (295)
T PRK05842 166 GVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEYN 221 (295)
T ss_pred ceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 369999999999999875432 3578888752 368999988644
No 24
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=73.76 E-value=19 Score=27.10 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=14.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040567 87 QVDMMELELKKLFDTVSSIHEEMFYLRER 115 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~r 115 (162)
+++.++..|.+++-.++.++...+-.+.|
T Consensus 16 ~L~rle~qi~q~~~~~~~~qs~l~~~~~r 44 (251)
T COG5415 16 DLSRLESQIHQLDVALKKSQSILSQWQSR 44 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444444433
No 25
>PRK15396 murein lipoprotein; Provisional
Probab=73.21 E-value=20 Score=22.51 Aligned_cols=46 Identities=13% Similarity=0.304 Sum_probs=32.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 040567 85 KGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRM 130 (162)
Q Consensus 85 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 130 (162)
..+++.|...++.|...++.+..+..-++.--..-.+-++..+.|+
T Consensus 24 ~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 24 NAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888877777665555555556666654
No 26
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=73.17 E-value=13 Score=28.85 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=33.1
Q ss_pred ceEEEEEECCCCCeEEecc--ccccccEEEEeec---------cCcEEEEEecC
Q 040567 14 HKLTVKVTSPYGNSYHQGD--HVESGNFAFTAAE---------AGDYTACFWSP 56 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n~ 56 (162)
..+.+.|+|.+|++|+... ..+.|.+.|.... +|.|+|-+...
T Consensus 141 ~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~ 194 (259)
T PRK12812 141 DEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYN 194 (259)
T ss_pred ceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence 3799999999999998754 3456777777633 68999998743
No 27
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=73.11 E-value=12 Score=34.62 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=36.7
Q ss_pred CCCceEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCCCC
Q 040567 11 PDTHKLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPEHN 59 (162)
Q Consensus 11 ~~~~~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~ 59 (162)
+..+++.+.+.||+|...-.. ....++ +..|+..+.|.|++|+.+..-.
T Consensus 880 ~~~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~~~ 931 (1113)
T KOG0518|consen 880 ASSQDITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKDQH 931 (1113)
T ss_pred CCccceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecCcc
Confidence 456789999999999864322 122334 6779999999999999988654
No 28
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=72.56 E-value=14 Score=28.19 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=32.7
Q ss_pred eEEEEEECCCCCeEEecc--ccccccEEEEee---------ccCcEEEEEecC
Q 040567 15 KLTVKVTSPYGNSYHQGD--HVESGNFAFTAA---------EAGDYTACFWSP 56 (162)
Q Consensus 15 ~i~~~i~~p~g~~v~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~n~ 56 (162)
.+.+.|+|.+|++|+..+ ..+.|.+.|... .+|.|+|-+.-.
T Consensus 130 ~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~ 182 (230)
T PRK12633 130 KVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSAS 182 (230)
T ss_pred EEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 799999999999998753 345777888752 358999998754
No 29
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=72.23 E-value=15 Score=22.80 Aligned_cols=49 Identities=29% Similarity=0.357 Sum_probs=30.6
Q ss_pred cCCCCCCCCCCCceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCC
Q 040567 2 VNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEH 58 (162)
Q Consensus 2 ~~~~~~~~~~~~~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 58 (162)
+|++++-+.| ++.+.+.+++.. ..-..+|.|.+.+ ..|.|.+.|+....
T Consensus 7 ~d~~t~~pl~---~a~V~~~~~~~~----~~Td~~G~F~i~~-~~g~~~l~is~~Gy 55 (88)
T PF13715_consen 7 VDSDTGEPLP---GATVYLKNTKKG----TVTDENGRFSIKL-PEGDYTLKISYIGY 55 (88)
T ss_pred EECCCCCCcc---CeEEEEeCCcce----EEECCCeEEEEEE-cCCCeEEEEEEeCE
Confidence 4555553332 566666665511 1113589999994 58999999987654
No 30
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.03 E-value=37 Score=26.01 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=34.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH----HHHHHHhhhhHHHHHHHHHHHHHHHhH
Q 040567 85 KGQVDMMELELKKLFDTVSSIHEEMFY--------------LREREEEM----QELNKTTNSRMASLGFISLVVCLSVAA 146 (162)
Q Consensus 85 ~~~~~~l~~~l~~l~~~l~~i~~~q~~--------------~~~re~~~----~~~~es~~~rv~~~si~qi~vli~~~~ 146 (162)
.++++.+..++.++......+-.+..- ...|-++- ....+ ..+..-.|+++.+++.++.-+
T Consensus 151 De~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~~~~~~~il~l~~~~~lv 229 (235)
T KOG3202|consen 151 DEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQCSQWCAILLLVGLLLLV 229 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccchhHHHHHHHHHHHH
Confidence 356777777777776665555443222 22222221 12222 333444577777666666666
Q ss_pred HHHHH
Q 040567 147 LQIWH 151 (162)
Q Consensus 147 ~Qv~~ 151 (162)
++++.
T Consensus 230 v~i~~ 234 (235)
T KOG3202|consen 230 VIIFI 234 (235)
T ss_pred HHHhc
Confidence 66653
No 31
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=70.59 E-value=19 Score=21.11 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=24.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 040567 87 QVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRM 130 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 130 (162)
.++.|...+..|..++..|..+..-++.--..-.+-+...+.|+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777777666666655544333333444444443
No 32
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=68.98 E-value=19 Score=27.35 Aligned_cols=43 Identities=19% Similarity=0.109 Sum_probs=31.3
Q ss_pred ceEEEEEECCCCCeEEeccccccccEEEEee---------ccCcEEEEEecCC
Q 040567 14 HKLTVKVTSPYGNSYHQGDHVESGNFAFTAA---------EAGDYTACFWSPE 57 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~---------~~G~y~~Cf~n~~ 57 (162)
..+.+.|+|.+|++|+...- +.|.+.|... .+|.|+|-+.-..
T Consensus 124 ~~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~ 175 (223)
T PRK12813 124 DKAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESYS 175 (223)
T ss_pred ceEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEEe
Confidence 37999999999999987653 4555555442 3689999887653
No 33
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=67.23 E-value=30 Score=22.11 Aligned_cols=54 Identities=13% Similarity=0.267 Sum_probs=39.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 040567 85 KGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISL 138 (162)
Q Consensus 85 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi 138 (162)
..+++.|...++.|..+++.+..+..-.+.--..-...++..|.|+=.--.+-+
T Consensus 23 ~~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~~~~ 76 (85)
T PRK09973 23 EQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDYFDC 76 (85)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 346788888888888888888888777777666666777777777765544443
No 34
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=66.21 E-value=55 Score=24.72 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=29.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 040567 87 QVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVV 140 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~v 140 (162)
.+-++...|.+|+.++.+..... .+.+.+..+..+|++++|++-.++
T Consensus 9 ~~~~~~~~L~rle~qi~q~~~~~-------~~~qs~l~~~~~r~tv~slAl~~l 55 (251)
T COG5415 9 FVTKYTADLSRLESQIHQLDVAL-------KKSQSILSQWQSRLTVYSLALTVL 55 (251)
T ss_pred ccccchhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34567777777777777664433 344555666666777776665544
No 35
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.52 E-value=22 Score=29.37 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 040567 91 MELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWH 151 (162)
Q Consensus 91 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~ 151 (162)
+..+++-|..+++.+.+..+.+++ .++++...++-||-|+-|++-++.+++|++.
T Consensus 338 I~qRv~vLN~kl~~i~~~~~~l~e------~ln~r~~~~LEWiIIiLI~~eV~i~i~~i~~ 392 (399)
T KOG2861|consen 338 IGQRVNVLNYKLKVIEDLLDILQE------NLNERHSERLEWIIIILIAFEVAIEIYQIVV 392 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH------HhhhccccceehhhHHHHHHHHHHHHHHHHH
Confidence 456667778888888877777765 4567778899999999999999999998764
No 36
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=62.37 E-value=24 Score=19.51 Aligned_cols=28 Identities=4% Similarity=-0.191 Sum_probs=15.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhH
Q 040567 119 MQELNKTTNSRMASLGFISLVVCLSVAA 146 (162)
Q Consensus 119 ~~~~~es~~~rv~~~si~qi~vli~~~~ 146 (162)
|.++-+.--....|.+++-+++++.+++
T Consensus 14 he~Ty~gFi~~~k~~~~~~~~~li~lai 41 (44)
T PF07835_consen 14 HEKTYDGFIKLTKWGTIAIAAILIFLAI 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555556666666666554
No 37
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=62.04 E-value=33 Score=20.82 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=7.4
Q ss_pred chHHHHHHHHHHHHHHHH
Q 040567 89 DMMELELKKLFDTVSSIH 106 (162)
Q Consensus 89 ~~l~~~l~~l~~~l~~i~ 106 (162)
..++..++.+.+.++.+.
T Consensus 9 ~~ie~~l~~~~~~i~~lE 26 (71)
T PF10779_consen 9 NRIETKLDNHEERIDKLE 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 38
>PF12669 P12: Virus attachment protein p12 family
Probab=55.82 E-value=14 Score=21.69 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=6.5
Q ss_pred HHHHhhhcc
Q 040567 152 LKTFFERKK 160 (162)
Q Consensus 152 lk~fF~~kk 160 (162)
++++++++|
T Consensus 17 ~r~~~k~~K 25 (58)
T PF12669_consen 17 IRKFIKDKK 25 (58)
T ss_pred HHHHHHHhh
Confidence 488887764
No 39
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=55.70 E-value=67 Score=23.92 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHhHH
Q 040567 89 DMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKT------TNSRMASLGFISLVVCLSVAAL 147 (162)
Q Consensus 89 ~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es------~~~rv~~~si~qi~vli~~~~~ 147 (162)
..-+..+..+.+.+.++..+..-..++........++ -+....|+..+.++++++++++
T Consensus 104 ~~W~~~i~~~~~~i~~ll~~a~~qqe~n~~~l~~Ld~w~~l~~wfdit~W~~~Iki~i~iv~~iI 168 (204)
T PF00517_consen 104 QQWEKEISNYTGNIYNLLEEAQNQQEKNEQDLLKLDSWTNLWSWFDITKWLWYIKIFIMIVIGII 168 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHCHHHHHHHHHH---------
T ss_pred HHHHHHhcccHHHHHHHHHHHHhchhhhhhhhcCCcHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655554444555555555554 3334445555656655555443
No 40
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=55.58 E-value=91 Score=23.82 Aligned_cols=20 Identities=5% Similarity=0.207 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 040567 132 SLGFISLVVCLSVAALQIWHL 152 (162)
Q Consensus 132 ~~si~qi~vli~~~~~Qv~~l 152 (162)
||.++-+++ +++.++-++.+
T Consensus 228 ~~~~~~i~~-v~~~Fi~mvl~ 247 (251)
T PF09753_consen 228 CWTWLMIFV-VIIVFIMMVLF 247 (251)
T ss_pred HHHHHHHHH-HHHHHHHHHHH
Confidence 555553333 33344444443
No 41
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=53.90 E-value=51 Score=24.90 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=31.5
Q ss_pred ceEEEEEECCCCCeEEecc--ccccccEEEEee------ccCcEEEEEecCC
Q 040567 14 HKLTVKVTSPYGNSYHQGD--HVESGNFAFTAA------EAGDYTACFWSPE 57 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v~~~~--~~~~g~~~f~~~------~~G~y~~Cf~n~~ 57 (162)
..+.+.|+|.+|++ +... ....|.+.|... .+|.|++-+....
T Consensus 123 ~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~~ 173 (218)
T PRK09619 123 PTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSGS 173 (218)
T ss_pred cEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEeC
Confidence 37999999999997 4332 235688888763 4789999987553
No 42
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=53.29 E-value=68 Score=21.68 Aligned_cols=57 Identities=23% Similarity=0.379 Sum_probs=31.9
Q ss_pred CCceEEEEEECCCCC-eEEeccc---cccccEEEEe---eccCcEEEEEecCCCCCCceEEEEEE
Q 040567 12 DTHKLTVKVTSPYGN-SYHQGDH---VESGNFAFTA---AEAGDYTACFWSPEHNPPATVTVEFE 69 (162)
Q Consensus 12 ~~~~i~~~i~~p~g~-~v~~~~~---~~~g~~~f~~---~~~G~y~~Cf~n~~~~~~~~~~v~~~ 69 (162)
|+..--+.|+|.+-+ ++++... .+...|+... +...+|.+||....=. -..+.+.|+
T Consensus 58 DGe~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V~ftGtkIn-hAvv~vtFe 121 (132)
T PF15417_consen 58 DGESGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVVCFTGTKIN-HAVVKVTFE 121 (132)
T ss_pred cCccceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEEEEeccEee-eEEEEEEec
Confidence 444455677776444 4554332 2344566543 5567999999987533 223444443
No 43
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=52.56 E-value=64 Score=22.91 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=36.2
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040567 79 WTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSR 129 (162)
Q Consensus 79 ~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~r 129 (162)
|..+.+...-+.++..+.+..+.++++..+.+-++.+............++
T Consensus 32 Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~k 82 (151)
T PF14584_consen 32 YDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQK 82 (151)
T ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 444444444567888888888888888888887777777776666655544
No 44
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=52.49 E-value=66 Score=21.29 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=24.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 040567 88 VDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRM 130 (162)
Q Consensus 88 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 130 (162)
++.+...+...-+.++++..+++-.-.+-.....++.+++.|+
T Consensus 55 I~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 55 INKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555666666666655555555566666666654
No 45
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=52.31 E-value=46 Score=19.43 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040567 88 VDMMELELKKLFDTVSSIHEEMFYLREREEEMQE 121 (162)
Q Consensus 88 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~ 121 (162)
++.++..+.++...+..++++..-++..-+...+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777666655544443333
No 46
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=51.81 E-value=54 Score=20.04 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=13.8
Q ss_pred eeccCcEEEEEecCCCC-CCceEEEEEEe
Q 040567 43 AAEAGDYTACFWSPEHN-PPATVTVEFEW 70 (162)
Q Consensus 43 ~~~~G~y~~Cf~n~~~~-~~~~~~v~~~~ 70 (162)
....+..+|.|.|-... ..+...+.+++
T Consensus 3 ~~~~d~lkf~F~~id~~d~~re~s~~l~i 31 (74)
T PF08234_consen 3 AIGGDQLKFVFTNIDPNDPDREFSFTLDI 31 (74)
T ss_dssp --STT-EEEEE-S-BTTBSSS-EEEEEE-
T ss_pred ccCCceEEEEEeEcCCCCCCceEEEEEEE
Confidence 34556689999998765 44555555554
No 47
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=49.94 E-value=60 Score=20.04 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=15.3
Q ss_pred CceEEEEEECCCCCeEEecc
Q 040567 13 THKLTVKVTSPYGNSYHQGD 32 (162)
Q Consensus 13 ~~~i~~~i~~p~g~~v~~~~ 32 (162)
...+.+.|+|.+|++|++..
T Consensus 24 a~~v~v~I~d~~G~~V~t~~ 43 (81)
T PF13860_consen 24 ADNVTVTIYDSNGQVVRTIS 43 (81)
T ss_dssp CEEEEEEEEETTS-EEEEEE
T ss_pred ccEEEEEEEcCCCCEEEEEE
Confidence 33699999999999997653
No 48
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=49.70 E-value=30 Score=27.76 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 040567 93 LELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWH 151 (162)
Q Consensus 93 ~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~ 151 (162)
.+++-|...++-|.+..+.+ -..++.+...++-||-|+-|++-+++++++++.
T Consensus 273 ~RvnvLN~Rl~vi~d~l~il------~e~ln~~~s~~lEWivIiLI~~eVllsl~~i~~ 325 (331)
T COG1723 273 PRVNVLNRRLEVISDLLDIL------NEQLNHSHSTRLEWIVIILIGLEVLLSLYNIIV 325 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHhhhcccceeEEEehhHHHHHHHHHHHHHHH
Confidence 34444444444444443333 345677888999999999999999999988763
No 49
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=49.15 E-value=38 Score=22.74 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=23.3
Q ss_pred eEEEEEECCCC-CeEEeccccccccEEE-----EeeccCcEEEEEecCCC
Q 040567 15 KLTVKVTSPYG-NSYHQGDHVESGNFAF-----TAAEAGDYTACFWSPEH 58 (162)
Q Consensus 15 ~i~~~i~~p~g-~~v~~~~~~~~g~~~f-----~~~~~G~y~~Cf~n~~~ 58 (162)
.|.+.-.++++ ..+....-..+|+..- ..-.+|.|++.|.-...
T Consensus 20 ~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Y 69 (112)
T TIGR02962 20 PVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDY 69 (112)
T ss_pred EEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhh
Confidence 44444334433 2343333334566541 12357999999987743
No 50
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=49.11 E-value=94 Score=22.07 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 040567 88 VDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVV 140 (162)
Q Consensus 88 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~v 140 (162)
++.+...-..+.+....++..-+-+-..+.+....++++..++.+|.-++.+.
T Consensus 30 l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~it 82 (157)
T PF04136_consen 30 LDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPIT 82 (157)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Confidence 34444444555555555555666677788899999999999999999888765
No 51
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=48.99 E-value=48 Score=22.35 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=25.1
Q ss_pred EEEEECCCCCeEEec-----cccccccEEEEe-eccCc--EEEEEecCC
Q 040567 17 TVKVTSPYGNSYHQG-----DHVESGNFAFTA-AEAGD--YTACFWSPE 57 (162)
Q Consensus 17 ~~~i~~p~g~~v~~~-----~~~~~g~~~f~~-~~~G~--y~~Cf~n~~ 57 (162)
++.+.+.+|+++... .+..+..|++.. +..|+ |.|||.-..
T Consensus 25 dl~~~~~~gkivv~~~~~~~~~~tsn~ysv~vge~~~~~~F~f~~k~eN 73 (112)
T PF09116_consen 25 DLCFVNDDGKIVVTDFNKDDKNDTSNSYSVEVGEYDGDNNFCFCFKMEN 73 (112)
T ss_dssp EEEEEEETTEEEEEEE-TTSTTS-S-SEEEEEEE--SS--EEEEEEGGG
T ss_pred eEEEEecCCEEEEEccccccccCCCCceEEEEeccCCCccEEEEEEece
Confidence 566777778876554 334567788877 33566 888887553
No 52
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=48.83 E-value=69 Score=20.43 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=31.1
Q ss_pred eEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCCC
Q 040567 15 KLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN 59 (162)
Q Consensus 15 ~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~ 59 (162)
+--+.+.|++|+---.-.-..+|+|.|-+ .+|.+++-...+...
T Consensus 23 gAyVRLLD~sgEFtaEvvts~~G~FRFfa-apG~WtvRal~~~g~ 66 (85)
T PF07210_consen 23 GAYVRLLDSSGEFTAEVVTSATGDFRFFA-APGSWTVRALSRGGN 66 (85)
T ss_pred CeEEEEEcCCCCeEEEEEecCCccEEEEe-CCCceEEEEEccCCC
Confidence 45678888888875544445788888887 678887776665543
No 53
>PHA02650 hypothetical protein; Provisional
Probab=48.53 E-value=26 Score=21.98 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=21.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040567 124 KTTNSRMASLGFISLVVCLSVAALQIWHLKTF 155 (162)
Q Consensus 124 es~~~rv~~~si~qi~vli~~~~~Qv~~lk~f 155 (162)
....+.-.+|-++-+++++++.++-..|||-.
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~flYLK~~ 73 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFSFFVFKGY 73 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555666777777778888888753
No 54
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=48.29 E-value=34 Score=21.73 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=21.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 040567 125 TTNSRMASLGFISLVVCLSVAALQIWHL 152 (162)
Q Consensus 125 s~~~rv~~~si~qi~vli~~~~~Qv~~l 152 (162)
+..+-..+|.++..+++++..++-+.|+
T Consensus 44 sl~SFsSIW~iiN~~il~~A~~vyLry~ 71 (82)
T PF03554_consen 44 SLSSFSSIWAIINVVILLCAFCVYLRYL 71 (82)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999998888766654
No 55
>PRK00523 hypothetical protein; Provisional
Probab=48.14 E-value=55 Score=20.21 Aligned_cols=28 Identities=7% Similarity=0.082 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 040567 131 ASLGFISLVVCLSVAALQIWHLKTFFER 158 (162)
Q Consensus 131 ~~~si~qi~vli~~~~~Qv~~lk~fF~~ 158 (162)
..|-++-++.+++-.+.=++.-|++|++
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444554455556666666654
No 56
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=47.33 E-value=61 Score=21.40 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhH
Q 040567 92 ELELKKLFDTVSSI--HEEMFYLREREEEMQELNKTTNSRM 130 (162)
Q Consensus 92 ~~~l~~l~~~l~~i--~~~q~~~~~re~~~~~~~es~~~rv 130 (162)
+.++..++..+.++ .++..-++.+-.+.+.....+..++
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55555565555555 4444444444444444444444443
No 57
>PF05371 Phage_Coat_Gp8: Phage major coat protein, Gp8; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1IFK_A 2C0W_A 2HI5_A 1FDM_A 1IFJ_A 2C0X_A 1IFI_A 1IFD_A 1MZT_A 1IFL_A ....
Probab=46.97 E-value=36 Score=19.56 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=17.2
Q ss_pred HHHHHHHHhHHHHHHHHHHhhh
Q 040567 137 SLVVCLSVAALQIWHLKTFFER 158 (162)
Q Consensus 137 qi~vli~~~~~Qv~~lk~fF~~ 158 (162)
-+++.+..+++=+...|+|+.+
T Consensus 30 ~vvv~v~gafigirlFKKf~sk 51 (52)
T PF05371_consen 30 PVVVLVTGAFIGIRLFKKFASK 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3566777888889999999865
No 58
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=46.54 E-value=40 Score=23.50 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=26.0
Q ss_pred eEEEEEECCCC---CeEEeccccccccEEEE----eeccCcEEEEEecCCC
Q 040567 15 KLTVKVTSPYG---NSYHQGDHVESGNFAFT----AAEAGDYTACFWSPEH 58 (162)
Q Consensus 15 ~i~~~i~~p~g---~~v~~~~~~~~g~~~f~----~~~~G~y~~Cf~n~~~ 58 (162)
+|.+.+...++ ..+.+..-..+|++... .-.+|.|++-|.....
T Consensus 44 gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Y 94 (137)
T PRK15036 44 DVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDY 94 (137)
T ss_pred CCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchh
Confidence 45555554332 23444444467888652 2357999999987643
No 59
>PHA01750 hypothetical protein
Probab=46.19 E-value=55 Score=19.84 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHH-HHHHhhh
Q 040567 129 RMASLGFISLVVCLSVAALQIWH-LKTFFER 158 (162)
Q Consensus 129 rv~~~si~qi~vli~~~~~Qv~~-lk~fF~~ 158 (162)
-|+..+++...+-.+.++.|+|+ +|..|++
T Consensus 4 ~VLvLtlmSTtaTtlFaIiqlYlKIKq~lkd 34 (75)
T PHA01750 4 TVLVLTLMSTTATTLFAIIQLYLKIKQALKD 34 (75)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777778888888876 5666654
No 60
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=46.07 E-value=33 Score=24.90 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=27.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 040567 126 TNSRMASLGFISLVVCLSVAALQIWHLKTFFER 158 (162)
Q Consensus 126 ~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~ 158 (162)
.+-|..+++++-++++++++++|++.+-+--.+
T Consensus 27 I~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 27 IHPRYIPLLYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456788999999999999999999987665544
No 61
>PHA02975 hypothetical protein; Provisional
Probab=45.51 E-value=44 Score=20.38 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 040567 127 NSRMASLGFISLVVCLSVAALQIWHLKT 154 (162)
Q Consensus 127 ~~rv~~~si~qi~vli~~~~~Qv~~lk~ 154 (162)
.++..+|-++-++.++++.++-..|||-
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYLK~ 67 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYLKL 67 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666677778888888888874
No 62
>PRK01844 hypothetical protein; Provisional
Probab=44.21 E-value=67 Score=19.85 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhh
Q 040567 133 LGFISLVVCLSVAALQIWHLKTFFER 158 (162)
Q Consensus 133 ~si~qi~vli~~~~~Qv~~lk~fF~~ 158 (162)
|-++-++.+++-.+.=++.-|++|++
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555666666654
No 63
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.97 E-value=1.2e+02 Score=26.00 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 040567 88 VDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLV 139 (162)
Q Consensus 88 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~ 139 (162)
++....+|+.|.+.+.++..++--...+..+++....++..|++.-.+.+-+
T Consensus 350 ~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqei 401 (508)
T KOG3091|consen 350 VKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEI 401 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777788887777666778888888888999998887766544
No 64
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=43.80 E-value=27 Score=26.50 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=26.6
Q ss_pred ceEEEEEECCCCCeEEecccc---cc-ccEEE--EeeccCcEEEEEecCC
Q 040567 14 HKLTVKVTSPYGNSYHQGDHV---ES-GNFAF--TAAEAGDYTACFWSPE 57 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v~~~~~~---~~-g~~~f--~~~~~G~y~~Cf~n~~ 57 (162)
.++++.|.|.+|+.+...... .. +.+.. ..-..|.|+++.....
T Consensus 29 ~~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~n~ 78 (283)
T PF08842_consen 29 KRVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWGNL 78 (283)
T ss_dssp -EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEES-
T ss_pred eEEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEECC
Confidence 379999999999966543221 12 45554 3356789998877753
No 65
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=42.35 E-value=72 Score=29.80 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=35.0
Q ss_pred eEEEEEECCCCCeEEeccccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEEE
Q 040567 15 KLTVKVTSPYGNSYHQGDHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTVE 67 (162)
Q Consensus 15 ~i~~~i~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v~ 67 (162)
++.+.+.+|+ ++=++-.+.++| +.+|+++++|.|.+-+.=-... ++..++|.
T Consensus 790 gLsi~~~Gps-kvd~~~~d~~dGt~kV~ytPtepG~Y~I~i~Fad~~I~gSPftVk 844 (1113)
T KOG0518|consen 790 GLSISVQGPS-KVDLNVEDREDGTCKVSYTPTEPGTYIINIKFADEHIKGSPFTVK 844 (1113)
T ss_pred ceEEEEeCCc-ccccceeecCCCeEEEEEeCCCCceEEEEEEEcCccCCCCceEEE
Confidence 6899999999 555555555555 6789999999998775533322 34444443
No 66
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=42.13 E-value=42 Score=18.96 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=10.9
Q ss_pred HHHHHhHHHHHHHHHHhh
Q 040567 140 VCLSVAALQIWHLKTFFE 157 (162)
Q Consensus 140 vli~~~~~Qv~~lk~fF~ 157 (162)
+++++.+.-+.++|||-+
T Consensus 10 li~lv~~gy~~hmkrycr 27 (54)
T PF13260_consen 10 LIVLVVVGYFCHMKRYCR 27 (54)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445556678888743
No 67
>PHA03054 IMV membrane protein; Provisional
Probab=42.04 E-value=47 Score=20.40 Aligned_cols=28 Identities=21% Similarity=0.038 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 040567 126 TNSRMASLGFISLVVCLSVAALQIWHLK 153 (162)
Q Consensus 126 ~~~rv~~~si~qi~vli~~~~~Qv~~lk 153 (162)
..++-.+|-++-++.++++.++-..|||
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555556666667777778888877
No 68
>PHA02819 hypothetical protein; Provisional
Probab=41.93 E-value=50 Score=20.28 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 040567 126 TNSRMASLGFISLVVCLSVAALQIWHLKT 154 (162)
Q Consensus 126 ~~~rv~~~si~qi~vli~~~~~Qv~~lk~ 154 (162)
..++-.+|-++-++.++++.++-..|||-
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~~~flYLK~ 69 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVIIFIIFYLKV 69 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555556666667777778888773
No 69
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=41.57 E-value=18 Score=30.17 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=17.2
Q ss_pred EEEeeccCcEEEEEecCCCC
Q 040567 40 AFTAAEAGDYTACFWSPEHN 59 (162)
Q Consensus 40 ~f~~~~~G~y~~Cf~n~~~~ 59 (162)
++.++++|.+++||.|....
T Consensus 427 s~~C~EpGWFRvcFAn~~~~ 446 (471)
T KOG0256|consen 427 SCHCHEPGWFRVCFANMSEE 446 (471)
T ss_pred cceecCCCeEEEEeccCCHH
Confidence 68899999999999988643
No 70
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=41.27 E-value=14 Score=26.77 Aligned_cols=41 Identities=12% Similarity=-0.047 Sum_probs=27.0
Q ss_pred EEEEECCCCCeEEecccccccc--EEE-EeeccCcEEEEEecCC
Q 040567 17 TVKVTSPYGNSYHQGDHVESGN--FAF-TAAEAGDYTACFWSPE 57 (162)
Q Consensus 17 ~~~i~~p~g~~v~~~~~~~~g~--~~f-~~~~~G~y~~Cf~n~~ 57 (162)
-+.|+|.+|++++++++.|+=. ..- ..+++|.|++-.+...
T Consensus 76 L~~IYD~~G~lLW~qr~vP~l~~~I~~~WL~k~gf~Eidtd~~~ 119 (180)
T PF08918_consen 76 LVLIYDENGKLLWRQRDVPELEKRIQPEWLKKNGFYEIDTDVDT 119 (180)
T ss_dssp EEEEEETTS-EEEESS--HHHHCCS-GGGGGSSEEEEEEEEHHH
T ss_pred EEEEEcCCCcEEEecCccHHHHHhcCHHHccCCCceEEecCcch
Confidence 4689999999999999887532 222 2266888888877653
No 71
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=41.17 E-value=72 Score=18.68 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=35.2
Q ss_pred CCCCCCceEEEEEECCCCCeEEe-c--cc----cccccEEEEeeccCcEEEEEecCCC
Q 040567 8 YPLPDTHKLTVKVTSPYGNSYHQ-G--DH----VESGNFAFTAAEAGDYTACFWSPEH 58 (162)
Q Consensus 8 ~~~~~~~~i~~~i~~p~g~~v~~-~--~~----~~~g~~~f~~~~~G~y~~Cf~n~~~ 58 (162)
...+.++.+.|....++|..+.. . .+ .....++++-..+|.|.+++.-...
T Consensus 6 ~~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~~~t~ty~~~G~y~V~ltv~n~ 63 (69)
T PF00801_consen 6 TYVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGSSVTHTYSSPGTYTVTLTVTNG 63 (69)
T ss_dssp SCEBTTSEEEEEETTTTSSECEEEEE-SSESEEECSSEEEEEESSSEEEEEEEEEEET
T ss_pred CEEcCCCEEEEEEEccCCCCeEEEEEECCCCccccCCCEEEEcCCCeEEEEEEEEEEC
Confidence 44567778999999888876432 1 12 2345788888889999998875543
No 72
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=40.76 E-value=28 Score=23.04 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 040567 130 MASLGFISLVVCLSVAALQIWHLKTFFER 158 (162)
Q Consensus 130 v~~~si~qi~vli~~~~~Qv~~lk~fF~~ 158 (162)
..+|+++..++.++++++..+.=++|.++
T Consensus 6 ~~~w~ii~a~~~~~~~~~~~~l~~~~a~~ 34 (106)
T PF10805_consen 6 KKNWGIIWAVFGIAGGIFWLWLRRTYAKR 34 (106)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 35799999888888888888777776554
No 73
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=40.31 E-value=1.2e+02 Score=23.28 Aligned_cols=23 Identities=9% Similarity=-0.202 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHH
Q 040567 129 RMASLGFISLVVCLSVAALQIWH 151 (162)
Q Consensus 129 rv~~~si~qi~vli~~~~~Qv~~ 151 (162)
--++|.++.++.+|++++--|-+
T Consensus 198 PSLiWvmistGg~IvltLTYVGw 220 (233)
T TIGR02878 198 PSLLWVMISTGGIIVATLTYVGW 220 (233)
T ss_pred cHHHHHHHHhhHHHHHHHhhhhh
Confidence 35899999999999988765543
No 74
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=40.23 E-value=1.7e+02 Score=22.45 Aligned_cols=24 Identities=8% Similarity=-0.134 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 040567 130 MASLGFISLVVCLSVAALQIWHLK 153 (162)
Q Consensus 130 v~~~si~qi~vli~~~~~Qv~~lk 153 (162)
-++|.++-++.+|++++.-+=+=|
T Consensus 198 sl~Wv~l~iG~iIi~tLtYvGwRK 221 (232)
T PF09577_consen 198 SLIWVMLSIGGIIIATLTYVGWRK 221 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999888888877665544
No 75
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=39.37 E-value=1.5e+02 Score=21.52 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 040567 92 ELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLV 139 (162)
Q Consensus 92 ~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~ 139 (162)
..+...+...+..+.++..-+..........++...+++.|..++-++
T Consensus 56 ~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~l~ 103 (180)
T PF04678_consen 56 NSRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLALLV 103 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777787777777777777777777777777765544433
No 76
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=38.97 E-value=75 Score=19.99 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 040567 131 ASLGFISLVVCLSVAALQIWHLKTFFER 158 (162)
Q Consensus 131 ~~~si~qi~vli~~~~~Qv~~lk~fF~~ 158 (162)
.||-..-++..++..+.=.+.+|.+|+.
T Consensus 44 lWF~~SCi~~~il~~~l~~~~vk~~Fkd 71 (80)
T PF06196_consen 44 LWFFYSCIGGPILFIILVWLMVKFFFKD 71 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555556677777778889999975
No 77
>PHA03163 hypothetical protein; Provisional
Probab=38.13 E-value=84 Score=20.24 Aligned_cols=28 Identities=7% Similarity=0.046 Sum_probs=21.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 040567 125 TTNSRMASLGFISLVVCLSVAALQIWHL 152 (162)
Q Consensus 125 s~~~rv~~~si~qi~vli~~~~~Qv~~l 152 (162)
+..+--.+|+++..+++++.++.-+.|+
T Consensus 53 sL~SFSSIWaliNv~Ivl~A~~iyL~y~ 80 (92)
T PHA03163 53 QLLSFSSIWAILNVLIMLIACIIYCIYM 80 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677999999999988887766554
No 78
>PF14109 GldH_lipo: GldH lipoprotein
Probab=37.62 E-value=1.1e+02 Score=21.01 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=20.5
Q ss_pred eEEEEEECCCCCeEEeccc-cccccEE----EEeeccCcEEEEEecCC
Q 040567 15 KLTVKVTSPYGNSYHQGDH-VESGNFA----FTAAEAGDYTACFWSPE 57 (162)
Q Consensus 15 ~i~~~i~~p~g~~v~~~~~-~~~g~~~----f~~~~~G~y~~Cf~n~~ 57 (162)
-+.+.+.||+|+.+=+.-+ .-+-.+- +..+.+|.|+|.+.--.
T Consensus 69 tl~~~Lad~~G~w~G~G~~~~~e~~~~~~~~~~f~~~G~Y~~~i~q~M 116 (131)
T PF14109_consen 69 TLECELADPDGKWLGKGIGDLYEYKLPYKENVRFPRKGSYTFTIEQAM 116 (131)
T ss_pred eEEEEEECCCCcEeeeeEeEeEEEEEEeecceecCCCCcEEEEEEecc
Confidence 3555555555555432211 1122221 23356777777776544
No 79
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=37.43 E-value=83 Score=18.06 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=25.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 040567 86 GQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRM 130 (162)
Q Consensus 86 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv 130 (162)
+.++.++..+..|.....+|..+..-....-.+....++.+..++
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l 48 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENL 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHH
Confidence 345667777777777766666665555444444444444444443
No 80
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=36.78 E-value=1.2e+02 Score=24.50 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040567 87 QVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTN 127 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~ 127 (162)
.++.++..|..+...|+-+.+..+|.+++..-+..++.+.+
T Consensus 183 k~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 183 KIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35778888888888888888888999888888877776643
No 81
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=36.78 E-value=1.5e+02 Score=20.75 Aligned_cols=30 Identities=23% Similarity=0.585 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhccc
Q 040567 132 SLGFISLVVCLSVAALQIWHLKTFFERKKL 161 (162)
Q Consensus 132 ~~si~qi~vli~~~~~Qv~~lk~fF~~kkl 161 (162)
..-.++++.-+++.++.++.+--||++|+.
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~ 83 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRR 83 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 555677777788888889999999999874
No 82
>PHA02844 putative transmembrane protein; Provisional
Probab=36.68 E-value=70 Score=19.86 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHH
Q 040567 129 RMASLGFISLVVCLSVAALQIWHLKT 154 (162)
Q Consensus 129 rv~~~si~qi~vli~~~~~Qv~~lk~ 154 (162)
+-.++-++-++.++++.++-..|||-
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK~ 71 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLKA 71 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 34444445566666777777777773
No 83
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=36.35 E-value=45 Score=21.37 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=24.8
Q ss_pred CCCCeEEeccccccccEEEEeeccCcEEEEEecCCC
Q 040567 23 PYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEH 58 (162)
Q Consensus 23 p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 58 (162)
|-|.-++.-.+...|.++... .|.|++||.-...
T Consensus 49 ~p~~r~h~L~G~~~g~~Si~i--~~~~RliF~~~~~ 82 (93)
T PF05015_consen 49 PPSNRLHKLKGDRKGQWSIRI--NGNWRLIFRFEDG 82 (93)
T ss_pred CcCCCcccccCCCCCcEEEEe--CCCEEEEEEEeCC
Confidence 445556666777788888776 5679999997765
No 84
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=36.09 E-value=1.3e+02 Score=19.84 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040567 92 ELELKKLFDTVSSIHEEMFYLREREEEMQELNKTT 126 (162)
Q Consensus 92 ~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~ 126 (162)
...|.+|.+++.++....+-+-.|..++.+-++.+
T Consensus 39 ~~qlrqllekVqNmSqsievL~~RT~rdlqyv~~~ 73 (101)
T PF12308_consen 39 SRQLRQLLEKVQNMSQSIEVLDLRTQRDLQYVRKM 73 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 34455555555555555555555555555544443
No 85
>PF03273 Baculo_gp64: Baculovirus gp64 envelope glycoprotein family; InterPro: IPR004955 Gp64 is the major envelope fusion glycoprotein in some, though not all, baculoviruses [, ]. It is found on the surface of both infected cells and budded virions as a homotrimer, and by determining the viral receptor preferences it defines the host range and infection efficiency. Baculovirus enters its host cells by endocytosis followed by a low-pH-induced fusion of the viral envelope with the endosomal membrane, allowing viral entrance into the cell cytoplasm. This membrane fusion, and also the efficient budding of virions from the infected cell, is dependent on Gp64. Gp75 is a homologous envelope glycoprotein from Thogotoviruses that, like Gp64, forms homotrimers and is involved in both binding and entering the host cell [].; GO: 0019048 virus-host interaction, 0019031 viral envelope; PDB: 3DUZ_A.
Probab=36.08 E-value=2.7e+02 Score=23.68 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=20.9
Q ss_pred CceEEEEEECCCCCeEEeccccc----cccEEEEeeccC------cEEEEE
Q 040567 13 THKLTVKVTSPYGNSYHQGDHVE----SGNFAFTAAEAG------DYTACF 53 (162)
Q Consensus 13 ~~~i~~~i~~p~g~~v~~~~~~~----~g~~~f~~~~~G------~y~~Cf 53 (162)
..+|.+.+++|+|.+|--....+ ++.|++...++- +---||
T Consensus 158 ~~~v~v~t~d~NGs~I~~s~~~~l~wt~d~~S~l~~~~S~~tres~~i~Cf 208 (498)
T PF03273_consen 158 DDDVKVATLDPNGSVINVSEPSVLHWTRDGFSYLLKPKSEFTRESTEIACF 208 (498)
T ss_dssp T--EEEEEB-TTS-B----SSS-EE--ETTEEEEESS---EEEEEEEEEEE
T ss_pred CCceEEEEECCCCCEEeccCCcceEeccCceEEEEccCceeeeeeeEEEEE
Confidence 55799999999999875443332 567777664322 344577
No 86
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=36.05 E-value=1.6e+02 Score=20.99 Aligned_cols=66 Identities=8% Similarity=0.080 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 040567 89 DMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKT 154 (162)
Q Consensus 89 ~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~ 154 (162)
..++..+.+.......+..+.+-+..+-.......+....+=..|.+..+++=|++++..|-.|.+
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~~a~~~lQIaI~Lasit~Lt~ 134 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFDLAVALLQIAIVLASITALTK 134 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777666666666677777777788888888888888877777776655
No 87
>PRK06798 fliD flagellar capping protein; Validated
Probab=35.50 E-value=2.7e+02 Score=23.40 Aligned_cols=41 Identities=10% Similarity=0.027 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040567 89 DMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSR 129 (162)
Q Consensus 89 ~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~r 129 (162)
+.++.+++++.+.+..+....+-.+.|-.+....+|.+-++
T Consensus 382 ~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~ 422 (440)
T PRK06798 382 KSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAA 422 (440)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443333333333333334443333
No 88
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=34.45 E-value=92 Score=20.20 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=19.4
Q ss_pred EEEECCCCCeEEeccccccccEEEEeeccCcEE
Q 040567 18 VKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYT 50 (162)
Q Consensus 18 ~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~ 50 (162)
+.++|.+|+.+..-....+|.|.-..+..+.+.
T Consensus 64 l~L~d~~G~~v~~f~~~~~g~~~g~~~~g~~~~ 96 (99)
T PF02974_consen 64 LVLTDADGSVVAFFYRSGDGRFEGQTPDGQPLS 96 (99)
T ss_dssp EEEE-TTS-EEEEEEEECTTEEEEEECCCEEEE
T ss_pred EEEECCCCCEEEEEEccCCeeEEeEcCCCCEEE
Confidence 677788888776655556666765554444443
No 89
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=33.23 E-value=2e+02 Score=25.68 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=17.9
Q ss_pred ccccEEEEeeccCcEEEEEecCC
Q 040567 35 ESGNFAFTAAEAGDYTACFWSPE 57 (162)
Q Consensus 35 ~~g~~~f~~~~~G~y~~Cf~n~~ 57 (162)
....+.|++..+|.|++=+....
T Consensus 436 ~~~~~~f~P~~~G~Y~IeV~vKd 458 (667)
T PRK14081 436 KNNWVNFIPEEKGNYELEVRVKD 458 (667)
T ss_pred cccEEEEEECCCeeEEEEEEEec
Confidence 46789999999999977655543
No 90
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=32.82 E-value=2.2e+02 Score=23.20 Aligned_cols=87 Identities=18% Similarity=0.102 Sum_probs=51.4
Q ss_pred cCcEEEEEecCC-----CCCCceEEEEEEee-eCCcccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040567 46 AGDYTACFWSPE-----HNPPATVTVEFEWK-TGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEM 119 (162)
Q Consensus 46 ~G~y~~Cf~n~~-----~~~~~~~~v~~~~~-~g~~~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~ 119 (162)
+|-=-+||+... +++.+.+.++|++. .+..-.- +.-++.-|-.+--..+..|...|..|-.+- +..+-+||
T Consensus 211 ~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc-~~e~~~yhhT~pv~lly~Lr~AL~~I~eeG--L~~~~~rH 287 (385)
T KOG2862|consen 211 AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGC-DGEPRAYHHTPPVQLLYSLRAALALIAEEG--LENSWRRH 287 (385)
T ss_pred CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhcc-CCcccccccCCcHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 454459998763 22566788999873 1211000 000111222444566788888888887654 55666778
Q ss_pred HHHHHHhhhhHHHHHH
Q 040567 120 QELNKTTNSRMASLGF 135 (162)
Q Consensus 120 ~~~~es~~~rv~~~si 135 (162)
++..+-+.-++.-|.+
T Consensus 288 ~e~s~~l~~~l~~~GL 303 (385)
T KOG2862|consen 288 REMSKWLKLSLEALGL 303 (385)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8888777777766653
No 91
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=32.58 E-value=75 Score=20.93 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.5
Q ss_pred EeeccCcEEEEEecCCCC
Q 040567 42 TAAEAGDYTACFWSPEHN 59 (162)
Q Consensus 42 ~~~~~G~y~~Cf~n~~~~ 59 (162)
...+.|.|.|-..|+...
T Consensus 73 k~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 73 KGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ChhhCcEEEEEEECCCCe
Confidence 346789999999999764
No 92
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=32.42 E-value=74 Score=17.37 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhcc
Q 040567 137 SLVVCLSVAALQIWHLKTFFERKK 160 (162)
Q Consensus 137 qi~vli~~~~~Qv~~lk~fF~~kk 160 (162)
-++-++++++.-.+.-|++-.+|+
T Consensus 15 ~lVglv~i~iva~~iYRKw~aRkr 38 (43)
T PF08114_consen 15 CLVGLVGIGIVALFIYRKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777888888888776
No 93
>PHA02955 hypothetical protein; Provisional
Probab=32.27 E-value=51 Score=24.81 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhh
Q 040567 132 SLGFISLVVCLSVAALQIWHLKTFFE 157 (162)
Q Consensus 132 ~~si~qi~vli~~~~~Qv~~lk~fF~ 157 (162)
-|.++-+++++++.++ ++++||-..
T Consensus 180 ~w~ii~~v~ii~~~v~-l~yikR~i~ 204 (213)
T PHA02955 180 KWFIIYIVLCLLILII-LGYIYRTVR 204 (213)
T ss_pred cchhHHHHHHHHHHHH-HHHHHHHhe
Confidence 5666666666666666 999998654
No 94
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=31.96 E-value=32 Score=23.47 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=11.9
Q ss_pred eccCcEEEEEecCCCC
Q 040567 44 AEAGDYTACFWSPEHN 59 (162)
Q Consensus 44 ~~~G~y~~Cf~n~~~~ 59 (162)
-..|.|++||.-....
T Consensus 114 LP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 114 LPEGSYRICFRLFNAT 129 (145)
T ss_pred CCCCceEEEEEEeccc
Confidence 3478999999866543
No 95
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=31.82 E-value=1.1e+02 Score=27.37 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=25.9
Q ss_pred EEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecC
Q 040567 18 VKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSP 56 (162)
Q Consensus 18 ~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~ 56 (162)
|.+.+++|...-.+.-.....|++++..+|.|++-..-.
T Consensus 227 F~~i~~~G~~~~~qdYst~n~~~y~~~~~G~Y~i~~~VK 265 (667)
T PRK14081 227 FVKIDSDGKQTCIQDYSTKNIVSYKEKKSGDYKLLCLVK 265 (667)
T ss_pred EEEECCCCCEEEecCccccceEEEEeCCCccEEEEEEEe
Confidence 334445555544444456788999999999998754444
No 96
>PF10959 DUF2761: Protein of unknown function (DUF2761); InterPro: IPR024249 Members of this family of proteins are annotated as KleF [,]. Their function is known.
Probab=31.71 E-value=71 Score=20.08 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=17.3
Q ss_pred eccCcEEEEEecCCCC-CCceEEEEE
Q 040567 44 AEAGDYTACFWSPEHN-PPATVTVEF 68 (162)
Q Consensus 44 ~~~G~y~~Cf~n~~~~-~~~~~~v~~ 68 (162)
...|.+.+||-+..++ -+-.+++.+
T Consensus 57 ~~g~s~dvcfa~g~~~tvgplmtffl 82 (95)
T PF10959_consen 57 TQGGSFDVCFADGSTRTVGPLMTFFL 82 (95)
T ss_pred ccCccEEEEecCCCccccccceeeee
Confidence 3567999999998876 233455555
No 97
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=31.61 E-value=28 Score=23.34 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=12.4
Q ss_pred EEEeeccCcEEEEEecCC
Q 040567 40 AFTAAEAGDYTACFWSPE 57 (162)
Q Consensus 40 ~f~~~~~G~y~~Cf~n~~ 57 (162)
-|.++++|.|+|++.+.+
T Consensus 9 Yf~a~~tG~Ytf~~~~~D 26 (113)
T PF10528_consen 9 YFYAPETGTYTFSVPNAD 26 (113)
T ss_dssp EE--SSSEEEEEEE-EEE
T ss_pred EEECCCCccEEEEEEccC
Confidence 578899999999996554
No 98
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.57 E-value=78 Score=23.29 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=20.3
Q ss_pred cEEEEEecCCCCCCceEEEEEEeeeCCcccc
Q 040567 48 DYTACFWSPEHNPPATVTVEFEWKTGVVSKD 78 (162)
Q Consensus 48 ~y~~Cf~n~~~~~~~~~~v~~~~~~g~~~~~ 78 (162)
..-+|+.|..+. ...-+..|+++....+.|
T Consensus 82 klvlvI~~~~tg-EvlErWqFnie~~~~~~d 111 (203)
T KOG3285|consen 82 KLVLVITSKHTG-EVLERWQFNIETENTASD 111 (203)
T ss_pred eEEEEEEecccc-cchhheeeeeeeeccccC
Confidence 567888888776 334478888876555444
No 99
>PHA03156 hypothetical protein; Provisional
Probab=31.47 E-value=1.2e+02 Score=19.49 Aligned_cols=28 Identities=7% Similarity=0.194 Sum_probs=20.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 040567 125 TTNSRMASLGFISLVVCLSVAALQIWHL 152 (162)
Q Consensus 125 s~~~rv~~~si~qi~vli~~~~~Qv~~l 152 (162)
+..+--.+|.++..+++++..++-+.|+
T Consensus 52 sl~SFSSIWallN~~i~~~A~~ifL~y~ 79 (90)
T PHA03156 52 SIKTFSSIWAILNGIIFFCASLFFLRHL 79 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667899999999988887665553
No 100
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=31.23 E-value=80 Score=17.54 Aligned_cols=18 Identities=6% Similarity=0.152 Sum_probs=9.4
Q ss_pred HHHHHHHHHH---HHHhHHHH
Q 040567 132 SLGFISLVVC---LSVAALQI 149 (162)
Q Consensus 132 ~~si~qi~vl---i~~~~~Qv 149 (162)
.||++-++.+ ++++++|=
T Consensus 8 iFsvvIil~If~~iGl~IyQk 28 (49)
T PF11044_consen 8 IFSVVIILGIFAWIGLSIYQK 28 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 66677763
No 101
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.10 E-value=1.4e+02 Score=23.12 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=26.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040567 87 QVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKT 125 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es 125 (162)
+++.++..|.+|...+.+...+.+-+..|+...+.-++.
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777666655444
No 102
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.80 E-value=1.7e+02 Score=24.87 Aligned_cols=56 Identities=21% Similarity=0.139 Sum_probs=39.0
Q ss_pred cCCCCC-----CCCCCCceEEEEEECCCCCeEEecc-ccccccEEEEeeccCcEEEEEecCC
Q 040567 2 VNPNEG-----YPLPDTHKLTVKVTSPYGNSYHQGD-HVESGNFAFTAAEAGDYTACFWSPE 57 (162)
Q Consensus 2 ~~~~~~-----~~~~~~~~i~~~i~~p~g~~v~~~~-~~~~g~~~f~~~~~G~y~~Cf~n~~ 57 (162)
+||+++ +++..-+.+++.+.|++|+.+.... ..+...+-..-.-++.|-+-|+++.
T Consensus 187 vDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~r~~~i~lpg~~~~HDFa~T~~y~If~~~Pv 248 (490)
T COG3670 187 VDPDTGELFNFGYSFALPYLTYYVVDADGELRRTVDIPLPGPPMMHDFAITENYLIFFDLPV 248 (490)
T ss_pred CCCCCceEEEEEeccCCCeeEEEEECCCCcEEEeeeeecCCCccceeeeecCceEEEEeCcc
Confidence 577777 4444444899999999999987654 3455555555555678888877763
No 103
>PRK14155 heat shock protein GrpE; Provisional
Probab=30.73 E-value=2.3e+02 Score=21.24 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=23.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040567 88 VDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKT 125 (162)
Q Consensus 88 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es 125 (162)
++.++..+..+.+.+..+..+.+-+|.|..+.+.....
T Consensus 22 l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~ 59 (208)
T PRK14155 22 IEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARA 59 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666665554443
No 104
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=30.66 E-value=2.5e+02 Score=21.51 Aligned_cols=31 Identities=6% Similarity=0.319 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 040567 129 RMASLGFISLVVCLSVAALQIWHLKTFFERK 159 (162)
Q Consensus 129 rv~~~si~qi~vli~~~~~Qv~~lk~fF~~k 159 (162)
...+|--+-++++++++++-++.+=++|++.
T Consensus 213 k~s~wf~~~miI~v~~sFVsMiliiqifkkl 243 (244)
T KOG2678|consen 213 KLSYWFYITMIIFVILSFVSMILIIQIFKKL 243 (244)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3367777777888888899889998998864
No 105
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=30.38 E-value=92 Score=20.69 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=11.6
Q ss_pred ceEEEEEECCCCCeEEe
Q 040567 14 HKLTVKVTSPYGNSYHQ 30 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v~~ 30 (162)
..+.+.|++.+|..++.
T Consensus 52 ~~~~~~i~~~~g~~v~~ 68 (142)
T PF14524_consen 52 PVFGFAIRDSDGQRVFG 68 (142)
T ss_dssp EEEEEEEEETT--EEEE
T ss_pred cEEEEEEEcCCCCEEEE
Confidence 35788888888888775
No 106
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=30.27 E-value=66 Score=19.01 Aligned_cols=20 Identities=25% Similarity=0.052 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 040567 132 SLGFISLVVCLSVAALQIWH 151 (162)
Q Consensus 132 ~~si~qi~vli~~~~~Qv~~ 151 (162)
|.--+-+.|+++.+++|++-
T Consensus 40 wLlglFvFVVcGSa~FqIIr 59 (65)
T KOG3491|consen 40 WLLGLFVFVVCGSALFQIIR 59 (65)
T ss_pred HHHHHHHHHhhcHHHHHHHH
Confidence 44445667788999999864
No 107
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=30.16 E-value=29 Score=20.86 Aligned_cols=23 Identities=22% Similarity=-0.011 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 040567 130 MASLGFISLVVCLSVAALQIWHL 152 (162)
Q Consensus 130 v~~~si~qi~vli~~~~~Qv~~l 152 (162)
=-||-.+-+.|++|-+++|++-+
T Consensus 38 gp~~L~l~iFVV~Gs~ifqiir~ 60 (63)
T PF06624_consen 38 GPWLLGLFIFVVCGSAIFQIIRS 60 (63)
T ss_pred CHHHHhhhheeeEcHHHHHHHHH
Confidence 34666677778899999999865
No 108
>PF02927 CelD_N: N-terminal ig-like domain of cellulase; InterPro: IPR004197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Cellulases (Endoglucanases) 3.2.1.4 from EC catalyse the endohydrolysis of 1,4-beta-D-glucosidic linkages in cellulose. This is the N-terminal ig-like domain of cellulase, enzymes containing this domain belong to family 9 of the glycoside hydrolases (GH9 from CAZY).; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1CLC_A 1WMX_B 2C24_B 1RQ5_A 3K4Z_A 3H7L_B 3RX5_A 3RX8_A 3H2W_A 3RX7_A ....
Probab=29.77 E-value=69 Score=20.32 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=8.6
Q ss_pred EEEEEECCCCCeEEe
Q 040567 16 LTVKVTSPYGNSYHQ 30 (162)
Q Consensus 16 i~~~i~~p~g~~v~~ 30 (162)
..|.|.|..|+.++.
T Consensus 36 ~~f~l~d~~~~~V~~ 50 (91)
T PF02927_consen 36 STFELVDASGGKVYT 50 (91)
T ss_dssp -EEEEEETTSBEEEE
T ss_pred eEEEEEcCCCCEEEE
Confidence 456666666665554
No 109
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=29.71 E-value=39 Score=18.29 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=12.3
Q ss_pred EeeccCcEEEEEecCC
Q 040567 42 TAAEAGDYTACFWSPE 57 (162)
Q Consensus 42 ~~~~~G~y~~Cf~n~~ 57 (162)
.-.++|.|+++|.-..
T Consensus 8 ~FT~PG~Y~l~~~a~~ 23 (41)
T TIGR03769 8 VFTKPGTYTLTVQATA 23 (41)
T ss_pred eeCCCeEEEEEEEEEE
Confidence 3357999999998753
No 110
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=29.16 E-value=1.8e+02 Score=19.49 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=27.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040567 87 QVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSR 129 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~r 129 (162)
+++.++.+|..+...+..+.+....+-+-....+--++....|
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 4567777777777777777777666655555555545444444
No 111
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=28.89 E-value=62 Score=16.27 Aligned_cols=20 Identities=25% Similarity=0.477 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHHHHHHhH
Q 040567 127 NSRMASLGFISLVVCLSVAA 146 (162)
Q Consensus 127 ~~rv~~~si~qi~vli~~~~ 146 (162)
.++-.-|+++|+++.+++..
T Consensus 10 ~~~~~GFTLiEllVa~~I~~ 29 (31)
T PF13544_consen 10 RRRQRGFTLIELLVAMAILA 29 (31)
T ss_dssp --------HHHHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHHHHH
Confidence 45556789999888776653
No 112
>PF08905 DUF1850: Domain of unknown function (DUF1850); InterPro: IPR015001 This entry contains proteins, which are functionally uncharacterised. Some members of this family appear to be miss-annotated as RocC an amino acid transporter from Bacillus subtilis.
Probab=28.76 E-value=91 Score=19.80 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=17.3
Q ss_pred CCCCeEEeccccccccEEEEeec-cCcEEEEEecC
Q 040567 23 PYGNSYHQGDHVESGNFAFTAAE-AGDYTACFWSP 56 (162)
Q Consensus 23 p~g~~v~~~~~~~~g~~~f~~~~-~G~y~~Cf~n~ 56 (162)
++|..++...+.+-..+.+-... ...|++|+.+.
T Consensus 51 ~dG~~~~~~~~~~~~~l~l~v~~~~~~~~l~~~g~ 85 (91)
T PF08905_consen 51 EDGWYIIRGINRPFPELRLRVGPVIANHRLCVDGK 85 (91)
T ss_pred ECCEEEEecCCccCCeEEEEECcccCceEEEECCE
Confidence 45555555333444455555544 55666666543
No 113
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=28.55 E-value=1.7e+02 Score=26.42 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 040567 114 EREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFER 158 (162)
Q Consensus 114 ~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~ 158 (162)
.|.+|-++....+-.-|+.-++..++.++.+++.+.+..+.||+.
T Consensus 730 ~~~~r~~~al~~~g~pv~~~~~st~l~~~~l~f~~~~~~~~ff~~ 774 (798)
T PF02460_consen 730 TRDERVAEALSSMGWPVLQGALSTFLGVLPLAFSPSYIFRVFFKT 774 (798)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 778888999999988898888888899999999999999999874
No 114
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=28.52 E-value=2e+02 Score=21.24 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhH
Q 040567 113 REREEEMQELNKTTNSRMASLGFISLVVCLSVAA 146 (162)
Q Consensus 113 ~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~ 146 (162)
|+|-+.|++..-...+|+.+.-+++.++.+++.+
T Consensus 20 RerVas~Yq~sa~~Ks~lk~l~~~h~ll~l~~~a 53 (186)
T PF07086_consen 20 RERVASHYQMSAQLKSRLKKLILFHALLWLLMAA 53 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777788888888888777765543
No 115
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=28.32 E-value=2.4e+02 Score=25.93 Aligned_cols=47 Identities=17% Similarity=0.024 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 040567 113 REREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERK 159 (162)
Q Consensus 113 ~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~k 159 (162)
+.|-.-.-.+.=.|..||+.|-++-+++++++.+--+..+-|+=-++
T Consensus 44 ~~R~kY~~Y~~CATSTRim~Wilf~cvll~Iv~iscfvti~RiQW~~ 90 (981)
T PF03408_consen 44 RMRCKYLCYLCCATSTRIMAWILFVCVLLSIVLISCFVTIARIQWNK 90 (981)
T ss_pred HHhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55777777888999999999999999998888887777776664443
No 116
>PRK11403 hypothetical protein; Provisional
Probab=28.29 E-value=1.1e+02 Score=20.62 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=21.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhHHH
Q 040567 123 NKTTNSRMASLGFISLVVCLSVAALQ 148 (162)
Q Consensus 123 ~es~~~rv~~~si~qi~vli~~~~~Q 148 (162)
..+.+-.+-|++.+-.+.++++++|-
T Consensus 59 ~~~~y~~~cw~~~llsi~LL~vGl~N 84 (113)
T PRK11403 59 LDDFFIHICQLVALITIGLLFIGVLN 84 (113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44677788888888888899888874
No 117
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=28.23 E-value=1.1e+02 Score=16.74 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHH
Q 040567 127 NSRMASLGFISLVVCLSVAALQI 149 (162)
Q Consensus 127 ~~rv~~~si~qi~vli~~~~~Qv 149 (162)
.+-+-+.|++-|+..++++++=+
T Consensus 8 ~s~vGL~Sl~vI~~~igm~~~~~ 30 (42)
T PF11346_consen 8 GSDVGLMSLIVIVFTIGMGVFFI 30 (42)
T ss_pred cChHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888776544
No 118
>PF04109 APG9: Autophagy protein Apg9 ; InterPro: IPR007241 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg9 plays a direct role in the formation of the cytoplasm to vacuole targeting and autophagic vesicles, possibly serving as a marker for a specialised compartment essential for these vesicle-mediated alternative targeting pathways [].
Probab=28.17 E-value=1.3e+02 Score=24.65 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 040567 116 EEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWH 151 (162)
Q Consensus 116 e~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~ 151 (162)
..+....++...+|+.+.+++.+++.-.+.+||+.+
T Consensus 107 ~~~r~~l~~~Lr~Rf~~~gi~nlll~Pfi~i~~il~ 142 (370)
T PF04109_consen 107 NSRRKELAEELRKRFRLAGILNLLLSPFILIYQILY 142 (370)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334578899999999999999999998888888764
No 119
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=27.93 E-value=1.1e+02 Score=20.11 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 040567 132 SLGFISLVVCLSVAALQIWHLKTFFERK 159 (162)
Q Consensus 132 ~~si~qi~vli~~~~~Qv~~lk~fF~~k 159 (162)
.-+++.+++-+++.+.=.+.+|++|.-+
T Consensus 22 LItLasVvvavGl~aGLfFcvR~~lslr 49 (106)
T PF14654_consen 22 LITLASVVVAVGLFAGLFFCVRNSLSLR 49 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3444555555666666778889887654
No 120
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=27.87 E-value=1.8e+02 Score=18.94 Aligned_cols=39 Identities=3% Similarity=0.164 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Q 040567 109 MFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAAL 147 (162)
Q Consensus 109 q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~ 147 (162)
..+...+..+...-++.+..+.+.+|.+...+-|++-++
T Consensus 51 ~~W~~~k~k~~~~FV~RNk~W~T~~S~~tS~isIL~LV~ 89 (100)
T PF06363_consen 51 KSWVKNKMKSMLSFVERNKAWFTVVSAVTSFISILLLVT 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHcchHhhHHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999888776665544
No 121
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.80 E-value=1.9e+02 Score=19.24 Aligned_cols=20 Identities=20% Similarity=0.529 Sum_probs=9.1
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 040567 89 DMMELELKKLFDTVSSIHEE 108 (162)
Q Consensus 89 ~~l~~~l~~l~~~l~~i~~~ 108 (162)
+.++..+..+.+.+..+...
T Consensus 11 ~~le~~l~~l~~~~~~LK~~ 30 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQ 30 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 122
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=27.80 E-value=66 Score=20.52 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.3
Q ss_pred CCceEEEEEECCCCCe
Q 040567 12 DTHKLTVKVTSPYGNS 27 (162)
Q Consensus 12 ~~~~i~~~i~~p~g~~ 27 (162)
.+.+..+.++||+|.+
T Consensus 17 ~~~D~~v~l~DpTG~i 32 (86)
T PF15072_consen 17 SSEDAFVVLKDPTGEI 32 (86)
T ss_pred cCCCeEEEEECCCCcE
Confidence 3448899999999986
No 123
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=27.66 E-value=1.5e+02 Score=17.98 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=29.9
Q ss_pred ceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCC
Q 040567 14 HKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPE 57 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~ 57 (162)
.++=+.|+|.+|+.+++..-.+...+++ +....+++-+-|..
T Consensus 7 ~~sWv~V~d~dG~~~~~~~l~~G~~~~~--~~~~~~~i~iGna~ 48 (77)
T PF13464_consen 7 GDSWVEVTDADGKVLFSGTLKAGETKTF--EGKEPFRIRIGNAG 48 (77)
T ss_pred CCeEEEEEeCCCcEeeeeeeCCCcEEEE--eCCCCEEEEEeCCC
Confidence 3567889999999999876555555666 44556777776664
No 124
>PRK14163 heat shock protein GrpE; Provisional
Probab=27.61 E-value=2.7e+02 Score=21.03 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=25.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040567 87 QVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSR 129 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~r 129 (162)
.++.++..+..+.+.+..++.+.+-+|.|..+.+.........
T Consensus 48 ~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~ 90 (214)
T PRK14163 48 QLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVA 90 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666555544333
No 125
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=27.33 E-value=1.4e+02 Score=17.63 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=26.8
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040567 82 VAKKGQVDMMELELKKLFDTVSSIHEEMFYLRER 115 (162)
Q Consensus 82 ~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~r 115 (162)
.|-.+.++-+..+|..|.+....+..+-.++|..
T Consensus 10 ~AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 10 YAVREEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp GT-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556788899999999999999998887777653
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=27.32 E-value=1.5e+02 Score=24.14 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=29.3
Q ss_pred CCCceEEEEEECCCCCe---EEeccccc---cccEEEEeeccCcEEEEEecCCCC
Q 040567 11 PDTHKLTVKVTSPYGNS---YHQGDHVE---SGNFAFTAAEAGDYTACFWSPEHN 59 (162)
Q Consensus 11 ~~~~~i~~~i~~p~g~~---v~~~~~~~---~g~~~f~~~~~G~y~~Cf~n~~~~ 59 (162)
|++..+-+.-..|+=++ ++.+++.= .--|+..-+.++...+||+|++..
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce
Confidence 33334444444444432 44544421 234777778899999999999765
No 127
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.15 E-value=2.2e+02 Score=21.88 Aligned_cols=53 Identities=8% Similarity=-0.038 Sum_probs=37.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 040567 87 QVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLV 139 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~ 139 (162)
....+...+++|...|..+.+-..-+..|+..+.+....-..-+..||-++--
T Consensus 55 eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~ 107 (243)
T cd07666 55 EFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEE 107 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchh
Confidence 35667777777777777777766666666667777777777777777776655
No 128
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=27.12 E-value=1.3e+02 Score=19.47 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=22.2
Q ss_pred ceEEEEEECC-----CCCeEEeccccccccEEEEeeccCcEEEEEecC
Q 040567 14 HKLTVKVTSP-----YGNSYHQGDHVESGNFAFTAAEAGDYTACFWSP 56 (162)
Q Consensus 14 ~~i~~~i~~p-----~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~ 56 (162)
..+-+-+..| +....|..+-.++|.|++.--.+|.|.+-....
T Consensus 22 ~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~ 69 (95)
T PF14686_consen 22 ANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYAD 69 (95)
T ss_dssp S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE-
T ss_pred eeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEe
Confidence 3455555555 233344444448999999999999999988874
No 129
>PF10029 DUF2271: Predicted periplasmic protein (DUF2271); InterPro: IPR014469 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.05 E-value=2.2e+02 Score=19.77 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=16.5
Q ss_pred ccCcEEEEEecCCCC-CCceEEEEEEe
Q 040567 45 EAGDYTACFWSPEHN-PPATVTVEFEW 70 (162)
Q Consensus 45 ~~G~y~~Cf~n~~~~-~~~~~~v~~~~ 70 (162)
.+|.|++|+...... ....+++.|++
T Consensus 94 ~~g~Y~l~vEaarE~g~~~l~~~~~~l 120 (139)
T PF10029_consen 94 PDGGYTLRVEAAREHGGRELVRIPFPL 120 (139)
T ss_pred CCCcEEEEEEEEEEECCcEEEEEEEEe
Confidence 468899999877544 23345555555
No 130
>PRK10351 holo-(acyl carrier protein) synthase 2; Provisional
Probab=26.68 E-value=2.1e+02 Score=21.09 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=32.9
Q ss_pred EEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCCCCCceEEEEEEeeeCCcccchhhhh
Q 040567 19 KVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSKDWTKVA 83 (162)
Q Consensus 19 ~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~~~~v~~~~~~g~~~~~~~~~a 83 (162)
..++++|+..... ...+.|+...+|.|-+|.-.... .|.+|++.-....+|..++
T Consensus 43 i~~~~~GKP~l~~----~~~~~fSISHSg~~va~a~s~~~------~VGIDIE~i~~~~~~~~la 97 (187)
T PRK10351 43 IIYGEQGKPAFAP----ETPLWFNLSHSGDDIALLLSDEG------EVGCDIEVIRPRANWRSLA 97 (187)
T ss_pred cccCcCCCccccC----CCCCeEEEecccCcEEEEEEcCC------CeEEEEEEecCccCHHHHH
Confidence 3468888887642 23467888889999988764322 2556665432223444433
No 131
>PRK14154 heat shock protein GrpE; Provisional
Probab=26.27 E-value=2.9e+02 Score=20.81 Aligned_cols=50 Identities=20% Similarity=0.123 Sum_probs=30.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 040567 87 QVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFI 136 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~ 136 (162)
.++.++..+..+.+.+..+..+.+-+|.|..+.+..+......-+.-.++
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LL 109 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLL 109 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666767777776667776666767666666555544433333333
No 132
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=26.07 E-value=39 Score=16.71 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=6.9
Q ss_pred HHHHHhhhcc
Q 040567 151 HLKTFFERKK 160 (162)
Q Consensus 151 ~lk~fF~~kk 160 (162)
.|.+|++++|
T Consensus 7 SLqRFLeKRK 16 (27)
T PF09425_consen 7 SLQRFLEKRK 16 (27)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHHHH
Confidence 5778888775
No 133
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=26.00 E-value=1.7e+02 Score=26.77 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040567 93 LELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCL 142 (162)
Q Consensus 93 ~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli 142 (162)
+.+..|...+++|..+.+-.-.-.+-...+++.|..--.+.||+|-++++
T Consensus 365 ~Dl~el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhllli 414 (1102)
T KOG1924|consen 365 DDLEELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLI 414 (1102)
T ss_pred hhHHHHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHH
Confidence 44556666777777777777777778888899999888999999988865
No 134
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.92 E-value=2.7e+02 Score=20.43 Aligned_cols=53 Identities=11% Similarity=-0.005 Sum_probs=38.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 040567 87 QVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLV 139 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~ 139 (162)
....+...+..|...|..+.+-..-+..|....-.-.......+..|+-++-.
T Consensus 15 eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~ 67 (200)
T cd07624 15 EFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETE 67 (200)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 45677778888888888887776666666666666667777777778877753
No 135
>PF12932 Sec16: Vesicle coat trafficking protein Sec16 mid-region; InterPro: IPR024340 The yeast protein Sec16 plays a key role in the formation of coat protein II vesicles, which mediate protein transport from the endoplasmic reticulum (ER) to the Golgi apparatus []. Mammals have two isoforms of this protein - Sec16A and Sec16B. Sec16A appears to be the primary orthologue as it has the highest sequence similarity to the yeast sequence. Sec16B is involved in export of the peroxisomal membrane biogenesis factor peroxin 16 []. This entry represents the central conserved domain (CCD) of Sec16, found in all isoforms of this protein. The CCD is necessary for targeting of the protein to the ER [].; PDB: 3MZK_C.
Probab=25.81 E-value=1.7e+02 Score=19.49 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 040567 94 ELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVV 140 (162)
Q Consensus 94 ~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~v 140 (162)
-++-|++.+.++.+...|.... .......+++.|.++.+++
T Consensus 73 V~kwl~~~i~~~~~~~~~~~~~------~~~~~e~~~LLw~lL~llv 113 (118)
T PF12932_consen 73 VIKWLEEKIEELERSLPYLANP------ESRRAEDKLLLWKLLKLLV 113 (118)
T ss_dssp HHHHHHHHHHHH----------------HHH-TTS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccc------ccccchhHHHHHHHHHHHH
Confidence 3455666666666555554433 4556678899999988765
No 136
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=25.32 E-value=3.4e+02 Score=21.78 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 040567 90 MMELELKKLFDTVSSIHEEMFYLR 113 (162)
Q Consensus 90 ~l~~~l~~l~~~l~~i~~~q~~~~ 113 (162)
++-..|+.+++.+..+.+..+...
T Consensus 113 e~~~nL~dlQn~m~~~~~~~d~~~ 136 (359)
T PF06398_consen 113 EIVMNLRDLQNKMEDLSDPYDFLS 136 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666665554444
No 137
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=25.26 E-value=2e+02 Score=18.76 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 040567 116 EEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFF 156 (162)
Q Consensus 116 e~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF 156 (162)
.......++.+-.-+-.|-+.-++.+++.-+ +-.||.+|
T Consensus 58 dee~k~~n~Knir~~KmwilGlvgTi~gsli--ia~lr~~f 96 (98)
T PF11166_consen 58 DEENKKKNDKNIRDIKMWILGLVGTIFGSLI--IALLRTIF 96 (98)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 3344445555555688888887777665443 34556655
No 138
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=25.20 E-value=1.1e+02 Score=23.18 Aligned_cols=36 Identities=14% Similarity=0.395 Sum_probs=25.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 040567 124 KTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERK 159 (162)
Q Consensus 124 es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~k 159 (162)
.+..+-+.+|.++++++-+++-+.=+|.+-+|+.+|
T Consensus 57 ~~~~~~~s~~~l~qmi~aL~~VI~Liy~l~rwL~rR 92 (219)
T PRK13415 57 EAAASSVSAFDFVKLIGATLFVIFLIYALVKWLNKR 92 (219)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777889999998877666666666665555543
No 139
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=25.03 E-value=1e+02 Score=20.21 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHH
Q 040567 87 QVDMMELELKKLFDTVSSIHEE 108 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~ 108 (162)
.++|+.+++++|+...+++.+.
T Consensus 32 s~~pi~E~i~kLe~~addL~ns 53 (96)
T PRK00965 32 DMDPIEEEINKLEALADDLENS 53 (96)
T ss_pred echHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999998864
No 140
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=24.92 E-value=2.3e+02 Score=19.29 Aligned_cols=53 Identities=13% Similarity=0.101 Sum_probs=33.9
Q ss_pred CCCceEEEEEECCCCCeEEe---------c-cccc-cccEEEEeeccCcEEEEEecCCCCCCce
Q 040567 11 PDTHKLTVKVTSPYGNSYHQ---------G-DHVE-SGNFAFTAAEAGDYTACFWSPEHNPPAT 63 (162)
Q Consensus 11 ~~~~~i~~~i~~p~g~~v~~---------~-~~~~-~g~~~f~~~~~G~y~~Cf~n~~~~~~~~ 63 (162)
|+..++++..+||+-+.|.. - .+.+ ...|...-...|.|+|-|.-+...++..
T Consensus 23 g~~~g~nvFyYDsti~RI~TCc~vrP~Y~v~~~D~~~~sf~I~kn~dG~~~Ft~~e~~~~ep~~ 86 (123)
T PF11763_consen 23 GDPEGENVFYYDSTIKRIVTCCCVRPIYRVYHDDPNKSSFNIIKNNDGTYQFTFVESSFSEPLD 86 (123)
T ss_pred CCcCceeeEEecCCcceEEEecccccEEEEeecCCCcceEEEEecCCCcEEEEEcccCCCCcEE
Confidence 46668999999998876542 1 1122 2344455566799999888776554433
No 141
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=24.90 E-value=1.8e+02 Score=19.00 Aligned_cols=38 Identities=5% Similarity=0.045 Sum_probs=16.5
Q ss_pred eEEEEEECCC-CCeEEeccc-cc-cccEEEEeeccCcEEEE
Q 040567 15 KLTVKVTSPY-GNSYHQGDH-VE-SGNFAFTAAEAGDYTAC 52 (162)
Q Consensus 15 ~i~~~i~~p~-g~~v~~~~~-~~-~g~~~f~~~~~G~y~~C 52 (162)
+..+.++... +..++.... .+ .....+.....|...++
T Consensus 30 dgnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~ 70 (116)
T cd00028 30 DYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIY 70 (116)
T ss_pred eEEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEE
Confidence 5555555433 345544322 11 22333444556654333
No 142
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=24.35 E-value=1.1e+02 Score=20.21 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 040567 87 QVDMMELELKKLFDTVSSIHEEM 109 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~q 109 (162)
+++|+++++++|+..++++.+..
T Consensus 32 dv~pi~Eqi~kLe~~vddl~~sl 54 (108)
T COG4062 32 DVDPIEEQIKKLETLVDDLENSL 54 (108)
T ss_pred eccHHHHHHHHHHHHHHHHHhcc
Confidence 46899999999999999887653
No 143
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=24.29 E-value=1.1e+02 Score=20.11 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHH
Q 040567 87 QVDMMELELKKLFDTVSSIHEE 108 (162)
Q Consensus 87 ~~~~l~~~l~~l~~~l~~i~~~ 108 (162)
.++|+.+++++|+...+++.+.
T Consensus 31 s~~pi~eqi~kLe~~addl~ns 52 (97)
T PF05440_consen 31 SMDPINEQIDKLEKAADDLVNS 52 (97)
T ss_pred echHHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999874
No 144
>PF15237 PTRF_SDPR: PTRF/SDPR family
Probab=24.28 E-value=3.4e+02 Score=20.98 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 040567 91 MELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLG 134 (162)
Q Consensus 91 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~s 134 (162)
+-..|++|...++.++..|.-+-.|+......+.++..-+.-.|
T Consensus 7 VltLLdKl~~~vD~vQ~~Q~~mE~RQ~emE~sV~~IQ~dl~KLs 50 (246)
T PF15237_consen 7 VLTLLDKLAGMVDSVQETQQRMEERQREMEGSVKGIQGDLTKLS 50 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44568888999999999999998888888888777766655443
No 145
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.14 E-value=2.9e+02 Score=20.08 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 040567 88 VDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLV 139 (162)
Q Consensus 88 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~ 139 (162)
...+...+.+|...|..+.+-..-+..|....-.-.......+.-|+.++-.
T Consensus 6 F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~ 57 (185)
T cd07628 6 FLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESG 57 (185)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Confidence 3456667777777777777666666666666666677777777777777755
No 146
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=24.10 E-value=2.2e+02 Score=18.78 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=20.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 040567 125 TTNSRMASLGFISLVVCLSVAALQIWHLKTFFER 158 (162)
Q Consensus 125 s~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~ 158 (162)
+......+|+++..++-++++..-.+.++.+.++
T Consensus 48 ~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~ 81 (118)
T PF10256_consen 48 EAFEPISWRNIIENILGCLTLGLSSLCFKTHYKR 81 (118)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777777777666655555555555444
No 147
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=24.03 E-value=1.9e+02 Score=18.00 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 040567 102 VSSIHEEMFYLREREEEMQELNKTTNSRMAS 132 (162)
Q Consensus 102 l~~i~~~q~~~~~re~~~~~~~es~~~rv~~ 132 (162)
++++....+-+......++..+....++..|
T Consensus 33 L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~ 63 (89)
T PF00957_consen 33 LEELEDKTEELSDNAKQFKKNAKKLKRKMWW 63 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555443
No 148
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=24.03 E-value=95 Score=16.50 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=15.1
Q ss_pred cEEEEeeccCcEEEEEecCC
Q 040567 38 NFAFTAAEAGDYTACFWSPE 57 (162)
Q Consensus 38 ~~~f~~~~~G~y~~Cf~n~~ 57 (162)
-+.|..++.+.|.+|-=..+
T Consensus 3 P~~~~~e~~~~~~lC~C~~S 22 (38)
T smart00704 3 PDEVEVEKREKYALCRCGRS 22 (38)
T ss_pred CEEEEecCCCEEEEeeCCCC
Confidence 46788888889999965444
No 149
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=23.98 E-value=51 Score=22.25 Aligned_cols=23 Identities=9% Similarity=0.335 Sum_probs=13.0
Q ss_pred hhccccchHHHHHHHHHHHHHHH
Q 040567 83 AKKGQVDMMELELKKLFDTVSSI 105 (162)
Q Consensus 83 a~~~~~~~l~~~l~~l~~~l~~i 105 (162)
+++++++.|..+|..|...+..+
T Consensus 93 ~tk~ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 93 PSREEIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666655554
No 150
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=23.69 E-value=1.6e+02 Score=21.74 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 040567 101 TVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFF 156 (162)
Q Consensus 101 ~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF 156 (162)
.+....+.++|.+.++...-........+...|.++-.+ .+-+=+||+|+-+++.
T Consensus 119 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~Y~f~~i-a~QvH~f~lYf~~kL~ 173 (186)
T PF07086_consen 119 AMYYFPEVQQYYRHGKAYRFIFGFSAVPMGVLWYIFIVI-AVQVHGFSLYFSKKLL 173 (186)
T ss_pred HHHHHHHHHHHHhcCCccceeeeehhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344455567777776666666666655555555555433 3344556888877765
No 151
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=23.31 E-value=2.1e+02 Score=18.63 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=18.0
Q ss_pred eEEEEEECCC-CCeEEecccc-c-cccEEEEeeccCcEEEE
Q 040567 15 KLTVKVTSPY-GNSYHQGDHV-E-SGNFAFTAAEAGDYTAC 52 (162)
Q Consensus 15 ~i~~~i~~p~-g~~v~~~~~~-~-~g~~~f~~~~~G~y~~C 52 (162)
+..+.++... +.+++..... + .+.........|...++
T Consensus 29 dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~ 69 (114)
T smart00108 29 DYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLY 69 (114)
T ss_pred CEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEE
Confidence 5556666533 4555543321 1 12244555566655544
No 152
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=23.25 E-value=87 Score=20.05 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=25.3
Q ss_pred eEEEEEECCCCCeEEecccc---ccccEEEEee---ccCcEEEEEecCCC
Q 040567 15 KLTVKVTSPYGNSYHQGDHV---ESGNFAFTAA---EAGDYTACFWSPEH 58 (162)
Q Consensus 15 ~i~~~i~~p~g~~v~~~~~~---~~g~~~f~~~---~~G~y~~Cf~n~~~ 58 (162)
.-.+.|.||+|+.+-...-. ....+..... .+|.|.+-...-..
T Consensus 34 ~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs~ 83 (97)
T PF04234_consen 34 FSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVSA 83 (97)
T ss_dssp C-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEET
T ss_pred ccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEec
Confidence 45677888888665332211 1235555543 47899988877654
No 153
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=22.84 E-value=2.6e+02 Score=19.09 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=32.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040567 86 GQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTN 127 (162)
Q Consensus 86 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~ 127 (162)
+-++.++.+++.|+-.++.+.+.++-+++|-...+....+..
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788888888888999998888888888777776665543
No 154
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=22.82 E-value=2.4e+02 Score=18.75 Aligned_cols=19 Identities=21% Similarity=0.057 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040567 107 EEMFYLREREEEMQELNKT 125 (162)
Q Consensus 107 ~~q~~~~~re~~~~~~~es 125 (162)
++.+|.+.|.+-.+.+.++
T Consensus 58 ~~~e~~~~~~El~rrLL~d 76 (117)
T TIGR03142 58 DEAEAEAARAELQRRLLAD 76 (117)
T ss_pred CHHHHHHHHHHHHHHHHHC
Confidence 3456666666666665544
No 155
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=22.79 E-value=2.6e+02 Score=19.21 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 040567 109 MFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHL 152 (162)
Q Consensus 109 q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~l 152 (162)
.+=++.-|+|..+...+..-....|=++-+++.+++++.-.++|
T Consensus 6 ceDLkaFErRLtEvI~~l~Pst~RWRiiL~v~svct~v~A~~wL 49 (125)
T PF09771_consen 6 CEDLKAFERRLTEVINSLQPSTTRWRIILVVVSVCTAVGAWHWL 49 (125)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 35567888899999999988888888887777666655444443
No 156
>PF07116 DUF1372: Protein of unknown function (DUF1372); InterPro: IPR010779 This entry is represented by Streptococcus phage Sfi11, Gp93. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.
Probab=22.41 E-value=1.7e+02 Score=19.37 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=22.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 040567 124 KTTNSRMASLGFISLVVCLSVAALQIWHLK 153 (162)
Q Consensus 124 es~~~rv~~~si~qi~vli~~~~~Qv~~lk 153 (162)
+....++..++.+-+++.+++++||+++.-
T Consensus 6 ~~~~~~~~~~~~~~il~s~~~~~~~v~~~~ 35 (104)
T PF07116_consen 6 KEKRDNLKRFATIIILISLLFNIWQVIYVI 35 (104)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 334456777778888888889999997643
No 157
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=22.24 E-value=3e+02 Score=21.93 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=26.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 040567 86 GQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMAS 132 (162)
Q Consensus 86 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~ 132 (162)
|.+..+.+.|+.|+...++| ..-.-.|-.+.+..++..+.|+..
T Consensus 18 Eti~qi~~aL~~L~~v~~di---F~rI~~Rv~~~~~~l~~i~~Ri~~ 61 (297)
T PF11945_consen 18 ETILQIADALEYLDKVSNDI---FSRISARVERNRERLQAIQQRIEV 61 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666655555 444556666666677777777643
No 158
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=22.05 E-value=85 Score=14.25 Aligned_cols=12 Identities=33% Similarity=0.694 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q 040567 133 LGFISLVVCLSV 144 (162)
Q Consensus 133 ~si~qi~vli~~ 144 (162)
|+++|+++.+.+
T Consensus 3 FTLiE~~v~l~i 14 (20)
T PF07963_consen 3 FTLIELLVALAI 14 (20)
T ss_pred eeHHHHHHHHHH
Confidence 567776665443
No 159
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.90 E-value=3.3e+02 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 040567 100 DTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLV 139 (162)
Q Consensus 100 ~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~ 139 (162)
.+...+...-+-+-+.+.+..+.+|++..++.+|+-++-+
T Consensus 133 ~kt~~l~eace~l~~eq~kl~elae~I~k~L~yF~~le~l 172 (733)
T KOG2604|consen 133 QKTSALHEACEQLLEEQSKLSELAEGIRKKLHYFAELEEL 172 (733)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3344444555666788899999999999999999999876
No 160
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.85 E-value=2.6e+02 Score=18.74 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=8.1
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 040567 89 DMMELELKKLFDTVSSIHE 107 (162)
Q Consensus 89 ~~l~~~l~~l~~~l~~i~~ 107 (162)
..++..+..+...+..+..
T Consensus 11 ~~le~~l~~l~~el~~LK~ 29 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKK 29 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 161
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=21.85 E-value=2.1e+02 Score=18.43 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=29.9
Q ss_pred eEEEEEEC-CCCCeEEeccccccccEEEEeeccCcEEEEE
Q 040567 15 KLTVKVTS-PYGNSYHQGDHVESGNFAFTAAEAGDYTACF 53 (162)
Q Consensus 15 ~i~~~i~~-p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf 53 (162)
++.+.+++ .+|+++.+..-..+|...|.......+-++-
T Consensus 30 ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~~~~~~viA~ 69 (97)
T PF11974_consen 30 GAEVELYDSRNGQVLASGKTDADGFASFDSTKKPFLVIAR 69 (97)
T ss_pred CCEEEEEECCCCcEeeeeeeCCCceEEecCCCCCEEEEEE
Confidence 78899999 9999998887678899888887444444443
No 162
>PF03558 TBSV_P22: TBSV core protein P21/P22; InterPro: IPR005332 Two small nested genes (p19 and p22) are located near the 3' end of the genome of tomato bushy stunt virus (TBSV) - the p19 gene encodes a soluble protein, whereas the p22 gene specifies a membrane-associated protein. p22 is required for cell-to-cell movement in all plants tested [].; GO: 0019028 viral capsid
Probab=21.76 E-value=3.2e+02 Score=19.75 Aligned_cols=58 Identities=16% Similarity=0.338 Sum_probs=34.5
Q ss_pred EECCCCCeEEeccccc-------cc-cEEEEeeccCcEEEEEecC--CCC---CCceEEEEEEeeeCCccc
Q 040567 20 VTSPYGNSYHQGDHVE-------SG-NFAFTAAEAGDYTACFWSP--EHN---PPATVTVEFEWKTGVVSK 77 (162)
Q Consensus 20 i~~p~g~~v~~~~~~~-------~g-~~~f~~~~~G~y~~Cf~n~--~~~---~~~~~~v~~~~~~g~~~~ 77 (162)
+.|-+|..+|..+.-. +| +.-|..+..|+|-+-|.-. .+. ....+++++.|+.|-.+.
T Consensus 84 ~sD~ssr~L~~Tk~fnLG~~i~le~~qL~F~l~~~gd~PI~F~~t~l~S~F~e~r~LfStSleWq~~~S~t 154 (189)
T PF03558_consen 84 ISDTSSRKLHCTKEFNLGHGIRLEGSQLPFCLPTRGDYPIVFEVTVLVSQFREGRELFSTSLEWQMMLSPT 154 (189)
T ss_pred ccccccceeeeehhccCCcceEEeeccCceeeecCCCcceEEEEEEeechhhccceeEEeEeEEEeeccCC
Confidence 4456778888754321 23 3456666677776665544 222 345678888888775543
No 163
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=21.60 E-value=1.9e+02 Score=20.92 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=28.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 040567 123 NKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFER 158 (162)
Q Consensus 123 ~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~ 158 (162)
.-|+..++.+=......+.++..+.|..+++|+.++
T Consensus 140 ~~S~~~Wv~fk~fG~~~l~~~f~i~q~~~l~k~~~~ 175 (176)
T PF04279_consen 140 NFSEDTWVNFKVFGLMGLTFLFVIAQIPYLRKHLKE 175 (176)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 345667888777788888899999999999998653
No 164
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=21.48 E-value=1.2e+02 Score=17.99 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.2
Q ss_pred eccCcEEEEEecCCCC
Q 040567 44 AEAGDYTACFWSPEHN 59 (162)
Q Consensus 44 ~~~G~y~~Cf~n~~~~ 59 (162)
...|.|..+..|....
T Consensus 44 ~D~G~YtC~a~N~~G~ 59 (70)
T cd05864 44 KDAGNYTVVLTNPITK 59 (70)
T ss_pred HHCEEEEEEEEECCCc
Confidence 4579999999999754
No 165
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=21.47 E-value=2.3e+02 Score=19.72 Aligned_cols=44 Identities=7% Similarity=0.103 Sum_probs=29.2
Q ss_pred ceEEEEEECCCCCeEEecccc-----c----cccEEEEeeccCcEEEEEecCCC
Q 040567 14 HKLTVKVTSPYGNSYHQGDHV-----E----SGNFAFTAAEAGDYTACFWSPEH 58 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v~~~~~~-----~----~g~~~f~~~~~G~y~~Cf~n~~~ 58 (162)
.-+.+.++|++|+++++.... | ..+|. ..-.+|.|.+++--...
T Consensus 47 fl~~i~l~d~~g~vv~~~~~~~L~~lP~~~i~N~Yv-~~~~~g~~gl~vpLGak 99 (133)
T PF07680_consen 47 FLIGIQLKDSTGHVVLNWDQEKLSSLPKSNIKNDYV-AKVKPGKHGLVVPLGAK 99 (133)
T ss_pred eeeEEEEECCCCCEEEEeCHHHhhhCChhHcCccEE-ccccCCceeEEEEcCCc
Confidence 357889999999998876442 1 33443 22347888888765543
No 166
>PRK14143 heat shock protein GrpE; Provisional
Probab=21.44 E-value=3.8e+02 Score=20.56 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040567 88 VDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKT 125 (162)
Q Consensus 88 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es 125 (162)
+..++..+..+.+.+..+..+.+-+|.|..+.+..+..
T Consensus 76 l~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~ 113 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL 113 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554444433
No 167
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.33 E-value=4.1e+02 Score=21.12 Aligned_cols=21 Identities=10% Similarity=0.302 Sum_probs=12.1
Q ss_pred cccchHHHHHHHHHHHHHHHH
Q 040567 86 GQVDMMELELKKLFDTVSSIH 106 (162)
Q Consensus 86 ~~~~~l~~~l~~l~~~l~~i~ 106 (162)
+.+..|+..|..|.+...++.
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa 226 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMA 226 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666555444
No 168
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=20.96 E-value=3.5e+02 Score=19.92 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=29.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 040567 88 VDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLV 139 (162)
Q Consensus 88 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~ 139 (162)
+......+..|+..|+.+.+...-+..+....-.........+..|+-.+.-
T Consensus 26 F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~ 77 (236)
T PF09325_consen 26 FEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEE 77 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 4455556666666666666655555555555555555555556655555443
No 169
>PRK14147 heat shock protein GrpE; Provisional
Probab=20.85 E-value=3.4e+02 Score=19.67 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040567 88 VDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNS 128 (162)
Q Consensus 88 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~ 128 (162)
++.++..+..+.+.+.-+..+.+-+|.|..+.+........
T Consensus 27 l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~ 67 (172)
T PRK14147 27 VESLRSEIALVKADALRERADLENQRKRIARDVEQARKFAN 67 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655556666666665555555444333
No 170
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=20.80 E-value=1.1e+02 Score=21.05 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=12.1
Q ss_pred ceEEEEEECCCCCeE
Q 040567 14 HKLTVKVTSPYGNSY 28 (162)
Q Consensus 14 ~~i~~~i~~p~g~~v 28 (162)
....+.++||+|+.+
T Consensus 112 ~~~~~y~~DPdG~~i 126 (154)
T cd07237 112 RMLSFYVRTPSGFAI 126 (154)
T ss_pred CcEEEEEECCCCcEE
Confidence 457788999999875
No 171
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=20.72 E-value=3e+02 Score=19.02 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=39.0
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Q 040567 84 KKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASL-GFISL 138 (162)
Q Consensus 84 ~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~-si~qi 138 (162)
..+++......++.|.+.+..+.+..--...|-...+........|++-. +..++
T Consensus 42 Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~ei 97 (141)
T PF13874_consen 42 QEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEI 97 (141)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888999999999997777777788888888887777776543 33443
No 172
>PHA02706 hypothetical protein; Provisional
Probab=20.69 E-value=80 Score=17.89 Aligned_cols=12 Identities=17% Similarity=0.672 Sum_probs=8.0
Q ss_pred HHHHHHHhhhcc
Q 040567 149 IWHLKTFFERKK 160 (162)
Q Consensus 149 v~~lk~fF~~kk 160 (162)
+.++..||.+||
T Consensus 27 vifinayfvkkr 38 (58)
T PHA02706 27 VIFINAYFVKKR 38 (58)
T ss_pred eeeeehhhhhhh
Confidence 456777777764
No 173
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=20.45 E-value=2.7e+02 Score=18.34 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=12.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhHH
Q 040567 122 LNKTTNSRMASLGFISLVVCLSVAAL 147 (162)
Q Consensus 122 ~~es~~~rv~~~si~qi~vli~~~~~ 147 (162)
++.-...-.+.-.++-|+++++.++|
T Consensus 13 l~K~~~FA~L~i~~FiILLIi~~~IW 38 (121)
T PF10669_consen 13 LTKIMFFAFLFIVVFIILLIITKSIW 38 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444555555555555
No 174
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=20.36 E-value=1.1e+02 Score=19.73 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=10.3
Q ss_pred eEEEEEECCCCCeE
Q 040567 15 KLTVKVTSPYGNSY 28 (162)
Q Consensus 15 ~i~~~i~~p~g~~v 28 (162)
.-.+.+.||+|+.+
T Consensus 92 ~~~~~f~DPdG~~i 105 (121)
T cd07244 92 GDSFYFLDPDGHKL 105 (121)
T ss_pred ccEEEEECCCCCEE
Confidence 45677888888775
No 175
>PF14089 KbaA: KinB-signalling pathway activation in sporulation
Probab=20.25 E-value=1.1e+02 Score=22.54 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 040567 133 LGFISLVVCLSVAALQIWHLKTF 155 (162)
Q Consensus 133 ~si~qi~vli~~~~~Qv~~lk~f 155 (162)
|..+-++-+++|.+||+..|.|+
T Consensus 157 ~l~~ml~pLl~CNAyQlL~Lhrl 179 (180)
T PF14089_consen 157 WLYLMLFPLLACNAYQLLMLHRL 179 (180)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcc
Confidence 55555677899999999999875
No 176
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=20.24 E-value=1.9e+02 Score=20.76 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=23.1
Q ss_pred EEeeccCcEEEEEecCCCC----CCceEEEEEEeeeCCcc
Q 040567 41 FTAAEAGDYTACFWSPEHN----PPATVTVEFEWKTGVVS 76 (162)
Q Consensus 41 f~~~~~G~y~~Cf~n~~~~----~~~~~~v~~~~~~g~~~ 76 (162)
|.+...| |++|..-.-+. ++..+.++|.+..|+.+
T Consensus 48 Fyt~~~G-Yk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D 86 (164)
T cd03778 48 FYTSRYG-YKMCLRIYLNGDGTGRGTHLSLFFVVMKGPND 86 (164)
T ss_pred cccCCCC-eEEEEEEEeCCCCCCCCCEEEEEEEEecCCcC
Confidence 5554544 99997765332 45678888888777654
No 177
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=20.06 E-value=2.1e+02 Score=19.17 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=26.7
Q ss_pred cccccEEEEeeccCcEEEEEecCCCCCCceEEEEEE
Q 040567 34 VESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFE 69 (162)
Q Consensus 34 ~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~~~~v~~~ 69 (162)
..+|.|.|.--.+|.|.+=+.+.... ...++|.+.
T Consensus 27 ~~dG~F~f~~Vp~GsY~L~V~s~~~~-F~~~RVdV~ 61 (123)
T PF09430_consen 27 RSDGSFVFHNVPPGSYLLEVHSPDYV-FPPYRVDVS 61 (123)
T ss_pred cCCCEEEeCCCCCceEEEEEECCCcc-ccCEEEEEe
Confidence 46899999988999999999988765 333555444
Done!