BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040570
         (210 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5
           PE=2 SV=1
          Length = 788

 Score = 42.0 bits (97), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 115 VKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLK 174
           V  +F A P AI     F   +  D TY++NRY +P     GV          C ++  +
Sbjct: 279 VGNVFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINE 338

Query: 175 WENNYIWALERLKSIMEENMLASVIVTDRE 204
            E +++W      + M  +   S I TD +
Sbjct: 339 TEASFVWLFNTWLAAMSAHPPVS-ITTDHD 367


>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6
           PE=2 SV=1
          Length = 703

 Score = 37.7 bits (86), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 111 DTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVY 170
           D   ++ +F A   +      F  V+ +D +Y + ++++PL+   GV     T  + C +
Sbjct: 273 DEGQLRNVFWADAFSKVSCSYFGDVIFIDSSYISGKFEIPLVTFTGVNHHGKTTLLSCGF 332

Query: 171 LKLKWENNYIWALERLKSIMEENMLASVIVTDR 203
           L  +   +Y W L+   S+M+ +     IVTDR
Sbjct: 333 LAGETMESYHWLLKVWLSVMKRS--PQTIVTDR 363


>sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11
           PE=2 SV=1
          Length = 680

 Score = 33.9 bits (76), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 121 AHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYI 180
           ++ S+I+  + F   ++ D T++ +  +MPL    GV +  +     CV L+ +   ++ 
Sbjct: 263 SYASSIQSYELFGDAVVFDTTHRLSAVEMPLGIWVGVNNYGVPCFFGCVLLRDENLRSWS 322

Query: 181 WALERLKSIMEENMLASVIVTD 202
           WAL+     M        I+TD
Sbjct: 323 WALQAFTGFM-NGKAPQTILTD 343


>sp|Q9S793|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8
           PE=2 SV=2
          Length = 725

 Score = 31.2 bits (69), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 110 VDTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCV 169
            D   ++ +F     A      F  VL+ D T  +N Y++PL+   G+     T  + C 
Sbjct: 296 ADDGSLRNVFWIDARARAAYSHFGDVLLFDTTCLSNAYELPLVAFVGINHHGDTILLGCG 355

Query: 170 YLKLKWENNYIW 181
            L  +    Y+W
Sbjct: 356 LLADQSFETYVW 367


>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana
           GN=FHY3 PE=1 SV=1
          Length = 839

 Score = 31.2 bits (69), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 30/74 (40%)

Query: 111 DTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVY 170
           D   VK +F     +     +F  V+ +D TY  N+Y MPL    GV        + C  
Sbjct: 260 DDQRVKNVFWVDAKSRHNYGSFCDVVSLDTTYVRNKYKMPLAIFVGVNQHYQYMVLGCAL 319

Query: 171 LKLKWENNYIWALE 184
           +  +    Y W +E
Sbjct: 320 ISDESAATYSWLME 333


>sp|Q97I20|MUTL_CLOAB DNA mismatch repair protein MutL OS=Clostridium acetobutylicum
           (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
           B-1787) GN=mutL PE=3 SV=1
          Length = 622

 Score = 30.4 bits (67), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 16/99 (16%)

Query: 43  DMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKY 102
           D S ++ R KD++    K       T   I N + K+     +G      ++++  E+ Y
Sbjct: 399 DRSFDDFREKDII----KETSQEKETYDIITNKKAKFPELRVIGQFNNTYILAESFEELY 454

Query: 103 I------------ERHKSDVDTNCVKALFLAHPSAIELL 129
           I            E+++ D+    V +  L  PS +ELL
Sbjct: 455 IIDQHAAHEKILFEKYREDIKNKGVSSQILITPSVVELL 493


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,175,917
Number of Sequences: 539616
Number of extensions: 2750000
Number of successful extensions: 7156
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7150
Number of HSP's gapped (non-prelim): 16
length of query: 210
length of database: 191,569,459
effective HSP length: 112
effective length of query: 98
effective length of database: 131,132,467
effective search space: 12850981766
effective search space used: 12850981766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)