Query 040570
Match_columns 210
No_of_seqs 130 out of 765
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 15:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040570.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040570hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijwc_ a.4.1.2 (C:) HIN recom 91.9 0.13 9.8E-06 27.7 4.1 38 31-75 4-41 (47)
2 d1exqa_ c.55.3.2 (A:) Retrovir 91.7 0.3 2.2E-05 33.1 7.0 63 135-208 5-67 (154)
3 d1cxqa_ c.55.3.2 (A:) Retrovir 90.5 0.44 3.2E-05 31.7 6.8 68 134-207 8-75 (147)
4 d1c6va_ c.55.3.2 (A:) Retrovir 85.8 1.1 8.2E-05 30.0 6.5 64 135-209 6-69 (159)
5 d1pdnc_ a.4.1.5 (C:) Paired pr 65.3 9.2 0.00067 24.3 6.1 45 30-81 14-58 (123)
6 d1fxla2 d.58.7.1 (A:119-203) H 63.9 7.3 0.00053 22.7 5.1 50 122-187 20-69 (85)
7 d1k78a1 a.4.1.5 (A:19-81) Pax- 62.9 6 0.00044 22.2 4.1 29 30-58 12-40 (63)
8 d1b0nb_ a.34.1.1 (B:) SinI ant 61.2 6 0.00043 18.0 4.0 26 34-59 4-29 (31)
9 d3begb1 d.58.7.1 (B:121-207) S 55.5 7.1 0.00052 22.9 3.8 46 122-190 14-59 (87)
10 d1fxla1 d.58.7.1 (A:37-118) Hu 53.2 17 0.0012 20.6 5.4 50 122-187 16-65 (82)
11 d2cpfa1 d.58.7.1 (A:362-446) P 50.7 19 0.0014 20.6 5.7 52 123-187 13-64 (85)
12 d2c5ra1 a.251.1.1 (A:66-129) E 45.1 20 0.0015 19.3 6.0 45 33-80 2-47 (64)
13 d1sfxa_ a.4.5.50 (A:) Hypothet 45.0 29 0.0021 21.0 8.0 80 33-124 2-83 (109)
14 d2cqca1 d.58.7.1 (A:109-191) A 42.0 27 0.0019 19.8 6.1 49 123-187 24-72 (83)
15 d1rk8a_ d.58.7.1 (A:) RNA-bind 41.8 25 0.0018 20.3 4.8 48 123-186 22-69 (88)
16 d1bcoa2 c.55.3.3 (A:258-480) m 37.3 51 0.0037 22.4 6.8 57 145-204 25-81 (223)
17 d1cvja1 d.58.7.1 (A:11-90) Pol 36.9 11 0.00078 21.6 2.4 48 123-186 15-62 (80)
18 d1s3ja_ a.4.5.28 (A:) Putative 36.3 46 0.0033 20.9 7.6 79 40-130 24-104 (143)
19 d2choa3 d.92.2.3 (A:5-126) Glu 36.1 11 0.00082 23.4 2.6 35 169-203 86-120 (122)
20 d1b7fa1 d.58.7.1 (A:123-204) S 35.6 19 0.0014 20.3 3.5 50 122-187 16-65 (82)
21 d1b7fa2 d.58.7.1 (A:205-289) S 34.7 37 0.0027 19.2 5.0 50 123-188 21-70 (85)
22 d1h2vz_ d.58.7.1 (Z:) CBP20, 2 34.2 33 0.0024 20.0 4.5 49 123-187 22-70 (93)
23 d1p1ta_ d.58.7.1 (A:) Cleavage 33.9 33 0.0024 20.3 4.6 49 123-187 23-71 (104)
24 d3broa1 a.4.5.28 (A:3-137) Tra 33.9 49 0.0035 20.4 7.5 77 43-129 21-99 (135)
25 d1musa_ c.55.3.4 (A:) Transpos 32.7 1E+02 0.0076 23.9 9.0 35 173-207 154-190 (474)
26 d2g9wa1 a.4.5.39 (A:3-124) Hyp 32.0 33 0.0024 21.3 4.4 52 32-104 4-57 (122)
27 d1u6fa1 d.58.7.1 (A:1-139) RNA 31.4 29 0.0021 21.9 4.2 49 123-187 57-105 (139)
28 d2guka1 d.360.1.1 (A:4-114) Hy 31.2 50 0.0036 20.3 4.9 43 89-132 33-75 (111)
29 d2cq0a1 d.58.7.1 (A:231-320) E 29.2 27 0.002 20.2 3.5 48 124-187 24-71 (90)
30 d1l3ka2 d.58.7.1 (A:103-181) N 29.0 44 0.0032 18.4 4.8 46 123-184 17-62 (79)
31 d1yvua2 c.55.3.10 (A:315-706) 29.0 1.1E+02 0.0081 23.1 9.4 73 135-207 184-260 (392)
32 d2jn6a1 a.4.1.19 (A:1-89) Unch 28.9 50 0.0036 19.0 5.1 45 31-82 4-50 (89)
33 d1tc3c_ a.4.1.2 (C:) Transposa 28.5 38 0.0028 17.5 3.8 29 30-58 3-31 (51)
34 d2a7wa1 a.204.1.4 (A:4-94) Pho 28.3 30 0.0022 20.6 3.5 22 42-63 70-91 (91)
35 d1no8a_ d.58.7.1 (A:) Nuclear 28.2 34 0.0025 19.1 3.7 48 123-187 15-62 (78)
36 d1l3ka1 d.58.7.1 (A:8-91) Nucl 28.0 49 0.0036 18.7 4.7 46 123-184 21-66 (84)
37 d1jmta_ d.58.7.3 (A:) d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=91.85 E-value=0.13 Score=27.73 Aligned_cols=38 Identities=8% Similarity=0.202 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHhCCCChHHHHHHHHHhCCCCcchHhHHhHH
Q 040570 31 GILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNA 75 (210)
Q Consensus 31 R~lt~~~k~~i~~l~~~g~~p~~I~~~l~~~~~~~~~t~~di~N~ 75 (210)
++||++|.+.+..|.+.|.+..+|...+ | +....||++
T Consensus 4 ~~lt~~q~~~a~~l~~~G~s~~~iA~~~----g---VSr~TiYry 41 (47)
T d1ijwc_ 4 RAINKHEQEQISRLLEKGHPRQQLAIIF----G---IGVSTLYRY 41 (47)
T ss_dssp CSSCHHHHHHHHHHHHTTCCHHHHHHHH----T---CCHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHCCCCHHHHHHHH----C---cCHHHHHhh
Confidence 5799999999999999999988886654 2 344456654
No 2
>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=91.72 E-value=0.3 Score=33.06 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=43.3
Q ss_pred EEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCcccCC
Q 040570 135 VLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAWH 208 (210)
Q Consensus 135 vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d~al~ 208 (210)
++.+|.|+-.|+| .++.+|...+ ++.++. +.+++.+...-++..+... ..|+.|.||+.....
T Consensus 5 ~W~~D~~~~~~k~-----ilv~vD~~Sr-~~~~~~-~~~~~~~~v~~~l~~~~~~----~~p~~I~sDnG~eF~ 67 (154)
T d1exqa_ 5 IWQLDCTHLEGKV-----ILVAVHVASG-YIEAEV-IPAETGQETAYFLLKLAGR----WPVKTIHTDNGSNFT 67 (154)
T ss_dssp EEEEEEEEETTEE-----EEEEEETTTT-EEEEEE-ESSSSHHHHHHHHHHHHHH----SCCCEEECCCCGGGT
T ss_pred ceeeEEEEECCEE-----EEEEEECcCC-cEEEEE-ecCcchHHHHhhhhhheec----cCCCEEEEcCCcccc
Confidence 7889999887764 4566788865 555555 4667777766666554332 348999999987654
No 3
>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
Probab=90.47 E-value=0.44 Score=31.72 Aligned_cols=68 Identities=12% Similarity=-0.023 Sum_probs=43.4
Q ss_pred cEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCcccC
Q 040570 134 RVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAW 207 (210)
Q Consensus 134 ~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d~al 207 (210)
+++.+|-|+.....+...+ .+.+|...+ ++.++ .+.+++.+....++..+...+ ..|+.|.||.....
T Consensus 8 ~~w~~D~~~~~~~~~~~~l-~v~vD~~Sr-~i~~~-~~~~~t~~~~~~~l~~~~~~~---g~p~~i~sDnG~~F 75 (147)
T d1cxqa_ 8 QIWQTDFTLEPRMAPRSWL-AVTVDTASS-AIVVT-QHGRVTSVAAQHHWATAIAVL---GRPKAIKTDNGSCF 75 (147)
T ss_dssp CEEEEEEEECGGGTTSCEE-EEEEETTTC-CEEEE-EESSCCHHHHHHHHHHHHHHH---CCCSEEECCSCHHH
T ss_pred CEEEEEEEEecCCCCeEEE-EEEEecccc-eeccc-ccCccchHHHHHHHHHHHHHh---CCCeEEEecccccc
Confidence 5889999887655555533 455666654 44444 456777666655555544444 35999999997543
No 4
>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}
Probab=85.85 E-value=1.1 Score=30.01 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=39.4
Q ss_pred EEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCcccCCC
Q 040570 135 VLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAWHP 209 (210)
Q Consensus 135 vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d~al~~ 209 (210)
+..+|.||..++| .++.+|... -++.++ .+.+++.+...-++. +.... ..|+.|.||+.....+
T Consensus 6 ~W~~D~t~~~~k~-----il~~vD~~S-r~~~~~-~~~~~~a~~v~~~l~---~~~~~-~~~~~I~sDnG~~F~~ 69 (159)
T d1c6va_ 6 TWQMDCTHLEGKI-----VIVAVHVAS-GFIEAE-VIPQETGRQTALFLL---KLAGR-WPITHLHTDNGANFAS 69 (159)
T ss_dssp EEEEEEEEETTEE-----EEEEECTTS-CCEEEE-ECSSCSHHHHHHHHH---HHHTT-SCCCEEECCCCSSTTS
T ss_pred ceeeEEEEECCEE-----EEEEEECCC-CeEEEE-EeeccCHHHHHHHHH---HHhhc-cCCceeEecCCCcccc
Confidence 6789999887664 344456554 445555 556777776655544 33332 2356799999876543
No 5
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=65.35 E-value=9.2 Score=24.35 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=35.0
Q ss_pred cCCCCHHHHHHHHHHHhCCCChHHHHHHHHHhCCCCcchHhHHhHHHHHHhh
Q 040570 30 AGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKV 81 (210)
Q Consensus 30 ~R~lt~~~k~~i~~l~~~g~~p~~I~~~l~~~~~~~~~t~~di~N~~~k~~~ 81 (210)
-|.|+.+.+..|..+.+.|+++++|-..+ + +....++++..+++.
T Consensus 14 GrpLs~dlR~rIv~~~~~G~s~r~iA~~~----~---VS~~tV~k~l~r~~~ 58 (123)
T d1pdnc_ 14 GRPLPNNIRLKIVEMAADGIRPCVISRQL----R---VSHGCVSKILNRYQE 58 (123)
T ss_dssp TSCCCHHHHHHHHHHHHTTCCHHHHHHHH----T---CCHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHhcCCHHHHHHHH----C---cCHHHHHHHHHHHHc
Confidence 47799999999999999999999986654 2 445567777777654
No 6
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.88 E-value=7.3 Score=22.71 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=33.4
Q ss_pred ChhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 122 HPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 122 ~~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
..+-+++|..|++|..+.-- .......+-+||||.=++.++-..+++.+-
T Consensus 20 e~~L~~~F~~~G~v~~v~i~----------------~d~~~g~~kg~afV~f~~~~~a~~Ai~~ln 69 (85)
T d1fxla2 20 QKELEQLFSQYGRIITSRIL----------------VDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 69 (85)
T ss_dssp HHHHHHHHGGGSCEEEEEEE----------------ECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCccccccc----------------cccccccCCCeeEEEEcCHHHHHHHHHHhC
Confidence 45567899999998763221 112223456788888888888888887763
No 7
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.94 E-value=6 Score=22.22 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.5
Q ss_pred cCCCCHHHHHHHHHHHhCCCChHHHHHHH
Q 040570 30 AGILNKEKSNLLVDMSKNNVRPKDVLHVL 58 (210)
Q Consensus 30 ~R~lt~~~k~~i~~l~~~g~~p~~I~~~l 58 (210)
-|.++-+.++.|..+.+.|+++++|-..+
T Consensus 12 GrPls~DLR~Riv~~~~~G~s~r~aA~rf 40 (63)
T d1k78a1 12 GRPLPDVVRQRIVELAHQGVRPCDISRQL 40 (63)
T ss_dssp TSCCCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 47899999999999999999999986665
No 8
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=61.24 E-value=6 Score=18.00 Aligned_cols=26 Identities=23% Similarity=0.481 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHhCCCChHHHHHHHH
Q 040570 34 NKEKSNLLVDMSKNNVRPKDVLHVLK 59 (210)
Q Consensus 34 t~~~k~~i~~l~~~g~~p~~I~~~l~ 59 (210)
..+=.+.+.....++++|..|.++|.
T Consensus 4 dqewvelmveakeanispeeirkyll 29 (31)
T d1b0nb_ 4 DQEWVELMVEAKEANISPEEIRKYLL 29 (31)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 34444555666789999999998874
No 9
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.46 E-value=7.1 Score=22.91 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=33.3
Q ss_pred ChhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHH
Q 040570 122 HPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIM 190 (210)
Q Consensus 122 ~~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~ 190 (210)
..+-.++|..|++|..++--. . +||||.=++.++-..+++.|-...
T Consensus 14 ~~~l~~~F~~~G~v~~~~i~~-----------------~------g~afV~f~~~~~a~~Ai~~l~g~~ 59 (87)
T d3begb1 14 WQDLKDHMREAGDVCYADVYR-----------------D------GTGVVEFVRKEDMTYAVRKLDNTK 59 (87)
T ss_dssp TTHHHHHHGGGSCEEEEEECT-----------------T------SEEEEEESSHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHhhhcccccccccc-----------------c------ceeeEEeCCHHHHHHHHHHhCCCE
Confidence 455678899999987764311 1 478999999999998888764443
No 10
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.22 E-value=17 Score=20.63 Aligned_cols=50 Identities=8% Similarity=-0.063 Sum_probs=31.6
Q ss_pred ChhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 122 HPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 122 ~~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
..+-.++|..|++|..+.-.. ......+-+|||+.=++.++-.-+++.+-
T Consensus 16 e~~l~~~f~~~G~v~~v~i~~----------------~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 65 (82)
T d1fxla1 16 QEEFRSLFGSIGEIESCKLVR----------------DKITGQSLGYGFVNYIDPKDAEKAINTLN 65 (82)
T ss_dssp HHHHHHHHHTTSCEEEEEEEE----------------CTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCccccccee----------------eccCCCceeeEEEEECCHHHHHHHHHHhC
Confidence 345667899999887543221 11222456788888888887776666553
No 11
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.69 E-value=19 Score=20.57 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=34.3
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
.+-+++|..|++|..+.-. ..-+......+-|||||.=++.++-.-+++.+.
T Consensus 13 ~~l~~~F~~~G~v~~v~i~-------------~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~ 64 (85)
T d2cpfa1 13 ETLKGVFSKVGAIKSCTIS-------------KKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ 64 (85)
T ss_dssp HHHHHHHHTTSCEEEEEEE-------------EEECTTCCEEEEEEEEEEESSHHHHHHHHHHST
T ss_pred HHHHHHHHHhCCcccccee-------------cccccccccccceEEEEEECCHHHHHHHHHHhC
Confidence 3456789999988764321 112233345667899999998888877766654
No 12
>d2c5ra1 a.251.1.1 (A:66-129) Early protein gp16.7 {Bacteriophage phi-29 [TaxId: 10756]}
Probab=45.06 E-value=20 Score=19.29 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhCCCC-hHHHHHHHHHhCCCCcchHhHHhHHHHHHh
Q 040570 33 LNKEKSNLLVDMSKNNVR-PKDVLHVLKKRNMHNATTIRAIYNARQKYK 80 (210)
Q Consensus 33 lt~~~k~~i~~l~~~g~~-p~~I~~~l~~~~~~~~~t~~di~N~~~k~~ 80 (210)
|+..+.+.++..-++|++ |..|++.|.-+. +-|.+.+-|+....|
T Consensus 2 ls~~e~~vLDlYe~SnIrIP~DIIEdl~~~~---L~te~EVmnYiEnqR 47 (64)
T d2c5ra1 2 LSACEVAVLDLYEQSNIRIPSDIIEDLVNQR---LQSEQEVLNYIETQR 47 (64)
T ss_dssp CCHHHHHHHHHHHHTTCCCCHHHHHHHHTTC---CCSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCcCcHHHHHHHHHhh---hhhHHHHHHHHHhhH
Confidence 555566666677789998 889998886533 456666766655443
No 13
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=44.96 E-value=29 Score=21.02 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHhCCCChHHHHH--HHHHhCCCCcchHhHHhHHHHHHhhhhcccchHHHHHHHHhhccceeEEEeeec
Q 040570 33 LNKEKSNLLVDMSKNNVRPKDVLH--VLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDV 110 (210)
Q Consensus 33 lt~~~k~~i~~l~~~g~~p~~I~~--~l~~~~~~~~~t~~di~N~~~k~~~~~~~g~~~~~~L~~~l~~~~~~~~~~~~d 110 (210)
++..+.+.+..|.+.|+++.++.- .|.+..+ .+..+|-....- .++.+...++.|.+.|++.. ..+
T Consensus 2 ~s~~~~~l~~~L~~lGlt~~e~~v~~~L~~~g~---~t~~eia~~~~i-------~~~~v~~~l~~L~~~GlV~r--~~~ 69 (109)
T d1sfxa_ 2 MSNPLGELVKALEKLSFKPSDVRIYSLLLERGG---MRVSEIARELDL-------SARFVRDRLKVLLKRGFVRR--EIV 69 (109)
T ss_dssp CCCHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC---BCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEE--EEE
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC---CCHHHHHHHhCC-------CcchHHHHHHHHHhCCCEEE--Eec
Confidence 455667778889999999886554 4444432 566666443221 23457778889999998643 223
Q ss_pred CCCceEEEEEeChh
Q 040570 111 DTNCVKALFLAHPS 124 (210)
Q Consensus 111 ~~~~~~~lf~a~~~ 124 (210)
++++-..++.+.+.
T Consensus 70 ~~~~r~~~~~a~~~ 83 (109)
T d1sfxa_ 70 EKGWVGYIYSAEKP 83 (109)
T ss_dssp ESSSEEEEEEECCH
T ss_pred cCCCccccccCCCH
Confidence 33444455666544
No 14
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.04 E-value=27 Score=19.78 Aligned_cols=49 Identities=12% Similarity=0.067 Sum_probs=31.3
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
.+-.++|..|++|..+.-.+ +.. ...+-+|||+.=++.++-..+++.+.
T Consensus 24 ~~l~~~F~~~G~i~~v~i~~---------------~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~ 72 (83)
T d2cqca1 24 RDLREVFSKYGPIADVSIVY---------------DQQ-SRRSRGFAFVYFENVDDAKEAKERAN 72 (83)
T ss_dssp HHHHHHHHTTSCEEEEEEEE---------------CSS-SSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCccccccc---------------ccc-ccccccceEEEECCHHHHHHHHHHcC
Confidence 44567889999887644221 111 12345788888888888777776653
No 15
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=41.77 E-value=25 Score=20.29 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=30.8
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERL 186 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~ 186 (210)
.+-.++|..|++|..+.-.. + .....+-+|||+.=++.++-..+++.+
T Consensus 22 ~~l~~~F~~~G~i~~v~i~~---------------d-~~tg~~~g~afV~f~~~~~A~~A~~~l 69 (88)
T d1rk8a_ 22 DEIQEKFCDYGEIKNIHLNL---------------D-RRTGFSKGYALVEYETHKQALAAKEAL 69 (88)
T ss_dssp HHHHHHHGGGSCEEEEEEEE---------------C-TTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccccccc---------------c-ccccccccceeEEECCHHHHHHHHHHc
Confidence 45567888999877533221 1 112234578899888888887777665
No 16
>d1bcoa2 c.55.3.3 (A:258-480) mu transposase, core domain {Bacteriophage mu [TaxId: 10677]}
Probab=37.27 E-value=51 Score=22.41 Aligned_cols=57 Identities=5% Similarity=-0.242 Sum_probs=31.7
Q ss_pred CcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCc
Q 040570 145 NRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRE 204 (210)
Q Consensus 145 n~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d 204 (210)
++-+-|-+ .+-+|...+. ++|+.+-..++.++...+|.......+ ...+..+.+|.-
T Consensus 25 g~~~Rp~l-~~~iD~~SR~-Ilg~~i~~~~s~~~v~~~l~~a~~~~~-~p~~~~~~~DnG 81 (223)
T d1bcoa2 25 GDVIRPKT-WFWQDVKTRK-ILGWRCDVSENIDSIRLSFMDVVTRYG-IPEDFHITIDNT 81 (223)
T ss_dssp SCEECCEE-EEEEETTTCC-EEEEEEESSCCHHHHHHHHHHHHHHHC-EESSCEEECCCT
T ss_pred CCCceeEE-EEEEECCCCc-EEEEEEeccCCHHHHHHHHHHHHHhhC-CCcccEEeecCC
Confidence 33444533 4445555444 567777766666666666555544433 234556778853
No 17
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.91 E-value=11 Score=21.59 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=28.6
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERL 186 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~ 186 (210)
.+..++|..|++|..+.-- .......+-+||||.=++.+.-.-+++.+
T Consensus 15 ~~l~~~F~~~G~i~~v~i~----------------~d~~tg~~~g~aFV~f~~~~~a~~ai~~l 62 (80)
T d1cvja1 15 AMLYEKFSPAGPILSIRVC----------------RDMITRRSLGYAYVNFQQPADAERALDTM 62 (80)
T ss_dssp HHHHHHHGGGSCEEEEEEE----------------ECTTTCCEEEEEEEEESSHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCEeEEEEE----------------ecccccCCCCceEEEECCHHHHHHHHHHc
Confidence 4556788888887643221 11222345677888777777766665544
No 18
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=36.34 E-value=46 Score=20.85 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=48.8
Q ss_pred HHHHHHhCCCChHH--HHHHHHHhCCCCcchHhHHhHHHHHHhhhhcccchHHHHHHHHhhccceeEEEeeecCCCceEE
Q 040570 40 LLVDMSKNNVRPKD--VLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKA 117 (210)
Q Consensus 40 ~i~~l~~~g~~p~~--I~~~l~~~~~~~~~t~~di~N~~~k~~~~~~~g~~~~~~L~~~l~~~~~~~~~~~~d~~~~~~~ 117 (210)
....+.+.|+++.+ |+..|.... ..+..+|-+...- ..+.+..+++.|.+.|++.. ....+|++...
T Consensus 24 ~~~~l~~~glt~~q~~iL~~l~~~~---~~t~~~la~~~~i-------~~~~vs~~l~~L~~~glv~r-~~~~~D~R~~~ 92 (143)
T d1s3ja_ 24 MLESMEKQGVTPAQLFVLASLKKHG---SLKVSEIAERMEV-------KPSAVTLMADRLEQKNLIAR-THNTKDRRVID 92 (143)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHS---EEEHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEE-EECSSCTTSEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCc-------CHHHHHHHHHHHHHhhhhee-eeecCCCCceE
Confidence 34456788999884 555555543 2566776544322 23457888999999998743 23345788777
Q ss_pred EEEeChhhHHHHH
Q 040570 118 LFLAHPSAIELLQ 130 (210)
Q Consensus 118 lf~a~~~~~~~~~ 130 (210)
+..+ +...+.+.
T Consensus 93 v~lT-~~G~~~~~ 104 (143)
T d1s3ja_ 93 LSLT-DEGDIKFE 104 (143)
T ss_dssp EEEC-HHHHHHHH
T ss_pred EEEC-HHHHHHHH
Confidence 6655 44555544
No 19
>d2choa3 d.92.2.3 (A:5-126) Glucosaminidase GH84, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=36.07 E-value=11 Score=23.38 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=29.9
Q ss_pred EeecCccchhHHHHHHHHHHHHhcCCCCeEEEecC
Q 040570 169 VYLKLKWENNYIWALERLKSIMEENMLASVIVTDR 203 (210)
Q Consensus 169 ~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~ 203 (210)
..+.-.+.+..-|.+++|+.++.++..|.+.|.|.
T Consensus 86 I~I~a~~~~G~~yg~qTL~QLi~~~~ip~~~I~D~ 120 (122)
T d2choa3 86 IVLAGNDERGTYYALQTFAQLLKDGKLPEVEIKDY 120 (122)
T ss_dssp EEEEESSHHHHHHHHHHHHHHCBTTEEEEEEEEEC
T ss_pred EEEEECCHHHHHHHHHHHHHHhhCCCccceEEEec
Confidence 45566788999999999999998778899999996
No 20
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=35.63 E-value=19 Score=20.32 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=30.9
Q ss_pred ChhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 122 HPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 122 ~~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
..+-+++|..|++|..+.-. .+ .....+-+||||.=++.++-.-+++.+-
T Consensus 16 ~~~l~~~F~~~G~v~~~~i~---------------~~-~~~g~~~g~afV~f~~~~~A~~ai~~ln 65 (82)
T d1b7fa1 16 DRELYALFRAIGPINTCRIM---------------RD-YKTGYSYGYAFVDFTSEMDSQRAIKVLN 65 (82)
T ss_dssp HHHHHHHHHTTSCEEEEECC---------------EE-TTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCcceeeee---------------ee-cccCCccccceEEECCHHHHHHHHHHhC
Confidence 35567889999987653221 11 1222445678888787777776666544
No 21
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=34.74 E-value=37 Score=19.25 Aligned_cols=50 Identities=4% Similarity=-0.021 Sum_probs=31.7
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKS 188 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~ 188 (210)
.+-+++|..|++|..+.-- .+ .....+-+|||+.=++.++-.-+++.+..
T Consensus 21 ~~l~~~F~~~G~i~~~~~~---------------~d-~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 70 (85)
T d1b7fa2 21 DQLDTIFGKYGSIVQKNIL---------------RD-KLTGRPRGVAFVRYNKREEAQEAISALNN 70 (85)
T ss_dssp HHHHHHHTSSSCEEEEEEE---------------EC-TTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCEeeeeee---------------cc-cccccCceeEEEEECCHHHHHHHHHHHCC
Confidence 4556788889887643211 11 12223467888988888888777776644
No 22
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.19 E-value=33 Score=19.98 Aligned_cols=49 Identities=6% Similarity=-0.076 Sum_probs=31.6
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
.+-.++|..|++|..+.- +-......+-+||||.=++.++-.-+++.+-
T Consensus 22 ~~l~~~F~~~G~i~~v~i----------------~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~ 70 (93)
T d1h2vz_ 22 EQIYELFSKSGDIKKIIM----------------GLDKMKKTACGFCFVEYYSRADAENAMRYIN 70 (93)
T ss_dssp HHHHHHHGGGSCEEEEEE----------------EECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcceecc----------------ccccccccccceEEEEECCHHHHHHHHHHhC
Confidence 455678889988875431 1222233456789998888888776666553
No 23
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.93 E-value=33 Score=20.35 Aligned_cols=49 Identities=6% Similarity=0.004 Sum_probs=30.6
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
.+-.++|..|++|..+.- ..+ .....+-+||||.=++.++-.-+++.+-
T Consensus 23 ~~l~~~f~~~G~i~~v~i---------------~~~-~~tg~~~g~afV~f~~~~~a~~ai~~l~ 71 (104)
T d1p1ta_ 23 EQLKDIFSEVGPVVSFRL---------------VYD-RETGKPKGYGFCEYQDQETALSAMRNLN 71 (104)
T ss_dssp HHHHHHHHTTSCCSEEEE---------------EEE-TTTTEEEEEEEEECSCHHHHHHHHHHSS
T ss_pred HHHHHhhhcccccccccc---------------ccc-cceeccCCceEEEECCHHHHHHHHHHcC
Confidence 455678888887654221 111 1122345789998888888887776653
No 24
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=33.86 E-value=49 Score=20.43 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=47.9
Q ss_pred HHHhCCCChHH--HHHHHHHhCCCCcchHhHHhHHHHHHhhhhcccchHHHHHHHHhhccceeEEEeeecCCCceEEEEE
Q 040570 43 DMSKNNVRPKD--VLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFL 120 (210)
Q Consensus 43 ~l~~~g~~p~~--I~~~l~~~~~~~~~t~~di~N~~~k~~~~~~~g~~~~~~L~~~l~~~~~~~~~~~~d~~~~~~~lf~ 120 (210)
.+...|+++.+ |+.+|..+. +..++..||.-... -..+.+..+++.|.+.|+..... ..+|++...++.
T Consensus 21 ~l~~~glt~~q~~vL~~l~~~~-~~~it~~ela~~~~-------~~~~~vs~~l~~L~~~g~v~r~~-~~~D~R~~~i~l 91 (135)
T d3broa1 21 FAKKYDLTGTQMTIIDYLSRNK-NKEVLQRDLESEFS-------IKSSTATVLLQRMEIKKLLYRKV-SGKDSRQKCLKL 91 (135)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTT-TSCCBHHHHHHHHT-------CCHHHHHHHHHHHHHTTSEEEEE-CSSCTTSEEEEE
T ss_pred HHHHcCCCHHHHHHHHHHHHcC-CCCCCHHHHHHHHC-------cCHhHHHHHHHHHHHHHHHHHHh-hhhhhhhhhhcc
Confidence 35678999887 667777653 34577777744322 12345678899999999975433 345677776666
Q ss_pred eChhhHHHH
Q 040570 121 AHPSAIELL 129 (210)
Q Consensus 121 a~~~~~~~~ 129 (210)
+ +...+.+
T Consensus 92 T-~~G~~~~ 99 (135)
T d3broa1 92 T-KKANKLE 99 (135)
T ss_dssp C-HHHHTTH
T ss_pred c-HHHHHHH
Confidence 5 3444333
No 25
>d1musa_ c.55.3.4 (A:) Transposase inhibitor (Tn5 transposase) {Escherichia coli [TaxId: 562]}
Probab=32.73 E-value=1e+02 Score=23.89 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=22.0
Q ss_pred CccchhHHHHHH--HHHHHHhcCCCCeEEEecCcccC
Q 040570 173 LKWENNYIWALE--RLKSIMEENMLASVIVTDRELAW 207 (210)
Q Consensus 173 ~E~~e~~~w~l~--~~~~~~~~~~~p~~iitD~d~al 207 (210)
.|..||++|.-. ...+.......+.+.|.||+..+
T Consensus 154 ~e~KeS~rW~ea~~~~~e~l~~~~~~vV~V~DRe~Di 190 (474)
T d1musa_ 154 ADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADI 190 (474)
T ss_dssp CSSCGGGHHHHHHHHHHHHHGGGGGGEEEEECGGGCC
T ss_pred hhhchhhhHHHHHHHHHHHhcCccceEEEEeccccch
Confidence 577899999743 33333432234467899998654
No 26
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=31.96 E-value=33 Score=21.34 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHhCC--CChHHHHHHHHHhCCCCcchHhHHhHHHHHHhhhhcccchHHHHHHHHhhccceeE
Q 040570 32 ILNKEKSNLLVDMSKNN--VRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIE 104 (210)
Q Consensus 32 ~lt~~~k~~i~~l~~~g--~~p~~I~~~l~~~~~~~~~t~~di~N~~~k~~~~~~~g~~~~~~L~~~l~~~~~~~ 104 (210)
+|++.+.+.+..+.+.| ++.++|++.|.+..|- .++.+..+++.|.++|+.-
T Consensus 4 ~L~~~E~~IM~~lW~~g~~~t~~eI~~~l~~~~~~---------------------~~sTV~T~L~rL~~Kg~l~ 57 (122)
T d2g9wa1 4 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDL---------------------AYTTVMAVLQRLAKKNLVL 57 (122)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCC---------------------CHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHcCCCCccHHHHHHHHhccCCC---------------------cHHHHHHHHHHHHHCCCEE
Confidence 56665555555555543 2456666665443321 2345677888888888764
No 27
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}
Probab=31.38 E-value=29 Score=21.86 Aligned_cols=49 Identities=10% Similarity=0.069 Sum_probs=31.6
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
.+-.++|..|++|..+.-- -......+-|||||.=++.++-.-+++.+-
T Consensus 57 ~~l~~~F~~~G~i~~v~i~----------------~d~~t~~~rg~afV~f~~~~~A~~Ai~~ln 105 (139)
T d1u6fa1 57 VQLRQLFERYGPIESVKIV----------------CDRETRQSRGYGFVKFQSGSSAQQAIAGLN 105 (139)
T ss_dssp HHHHHHHHHHSCEEEEEEE----------------EETTTTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHHHHhhccccccccc----------------cccccccccceeeEEECCHHHHHHHHHHhC
Confidence 4556788999988653321 112222345789998888888877777664
No 28
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=31.17 E-value=50 Score=20.34 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=30.3
Q ss_pred HHHHHHHHhhccceeEEEeeecCCCceEEEEEeChhhHHHHHhC
Q 040570 89 QMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPSAIELLQAF 132 (210)
Q Consensus 89 ~~~~L~~~l~~~~~~~~~~~~d~~~~~~~lf~a~~~~~~~~~~f 132 (210)
..+..++.|+..+.-|+...+...+ =.++||..+++++..+.|
T Consensus 33 ~~~~~~~rL~~~~I~y~iq~v~~~~-kvNlFFG~~~ci~~ir~~ 75 (111)
T d2guka1 33 DIPYAEERLRSRQIPYFAQPTPNTE-RTNLFFGCKECMEAIRLF 75 (111)
T ss_dssp GHHHHHHHHHHTTCCEEEECCTTSS-EEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCeEEEEcCCCC-eEEEEeCCHHHHHHHHHH
Confidence 4566778888877655444432223 579999999999988765
No 29
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.18 E-value=27 Score=20.16 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=29.7
Q ss_pred hhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 124 SAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 124 ~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
+-.++|..||+|..+.- ..+. ....+-|||||.=++.+.-..+++.+-
T Consensus 24 ~l~~~f~~~G~v~~v~i---------------~~d~-~t~~~rg~afV~f~~~~~A~~Ai~~l~ 71 (90)
T d2cq0a1 24 DLQELFRPFGSISRIYL---------------AKDK-TTGQSKGFAFISFHRREDAARAIAGVS 71 (90)
T ss_dssp HHHTTSTTTCCEEEEEE---------------EECS-SSCSEEEEEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccc---------------cccc-cccccccceeEEECCHHHHHHHHHHhC
Confidence 44567788888765321 1121 122355788998888888877777654
No 30
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.04 E-value=44 Score=18.43 Aligned_cols=46 Identities=0% Similarity=-0.001 Sum_probs=27.4
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALE 184 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~ 184 (210)
.+-+++|..|+++..+.-.... +....-+|||+.=++.|+..-+++
T Consensus 17 ~~l~~~F~~~G~i~~~~~~~~~----------------~~~~~~g~afV~f~~~e~~~~al~ 62 (79)
T d1l3ka2 17 HHLRDYFEQYGKIEVIEIMTDR----------------GSGKKRGFAFVTFDDHDSVDKIVI 62 (79)
T ss_dssp HHHHHHHTTTSCEEEEEEEECT----------------TTCCEEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccCC----------------CCcccccEEEEEEcCHHHHHHHHH
Confidence 4556788888887654332222 222345677777667777665553
No 31
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
Probab=29.00 E-value=1.1e+02 Score=23.06 Aligned_cols=73 Identities=15% Similarity=-0.080 Sum_probs=42.9
Q ss_pred EEEEecccccCcCCCc-ee-eEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHh--cCCCCeEEEecCcccC
Q 040570 135 VLIMDCTYKTNRYDMP-LL-EIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIME--ENMLASVIVTDRELAW 207 (210)
Q Consensus 135 vl~~D~Ty~tn~~~~p-l~-~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~--~~~~p~~iitD~d~al 207 (210)
++-+|.|+....-+.+ .. .++..+..+........-.+...++...-+++.+++.+. .+..|.-||.-||...
T Consensus 184 iIGiDv~h~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~~~~~~~l~~~~~~~~~~P~rIIi~RdG~~ 260 (392)
T d1yvua2 184 FVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGRL 260 (392)
T ss_dssp EEEECEEECCCSSSCCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHHHHHHHHHHHHHHTTCCTTCEEEEEESSCC
T ss_pred EEEEEEEecCCCCCcccEEEEEEEEcCCCCEEEEEEEecCCccHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Confidence 6678999876554443 22 234455666555544444444455555555555555553 3588998888887643
No 32
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=28.93 E-value=50 Score=19.04 Aligned_cols=45 Identities=13% Similarity=0.049 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHh--CCCChHHHHHHHHHhCCCCcchHhHHhHHHHHHhhh
Q 040570 31 GILNKEKSNLLVDMSK--NNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVR 82 (210)
Q Consensus 31 R~lt~~~k~~i~~l~~--~g~~p~~I~~~l~~~~~~~~~t~~di~N~~~k~~~~ 82 (210)
|+-|++-|..++.|.. .|.+.++|...+ | +....|+|.+.+++..
T Consensus 4 k~Ys~EfK~~aV~l~~~~~g~s~~~vA~~l----G---Is~~tl~~W~k~~~~~ 50 (89)
T d2jn6a1 4 KTYSEEFKRDAVALYENSDGASLQQIANDL----G---INRVTLKNWIIKYGSN 50 (89)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHH----T---SCHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCcHHHHHHHH----C---CCHHHHHHHHHHHhhc
Confidence 5688999999888763 388888875554 3 4567799999988654
No 33
>d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
Probab=28.50 E-value=38 Score=17.52 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=23.3
Q ss_pred cCCCCHHHHHHHHHHHhCCCChHHHHHHH
Q 040570 30 AGILNKEKSNLLVDMSKNNVRPKDVLHVL 58 (210)
Q Consensus 30 ~R~lt~~~k~~i~~l~~~g~~p~~I~~~l 58 (210)
.-.|+..++++++.|.+-|++...+-..+
T Consensus 3 ~~~L~~~e~aqlDVm~~L~~slhemaR~i 31 (51)
T d1tc3c_ 3 GSALSDTERAQLDVMKLLNVSLHEMSRKI 31 (51)
T ss_dssp SCCCCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 34688899999999999999987765554
No 34
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE {Chromobacterium violaceum [TaxId: 536]}
Probab=28.33 E-value=30 Score=20.63 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=16.4
Q ss_pred HHHHhCCCChHHHHHHHHHhCC
Q 040570 42 VDMSKNNVRPKDVLHVLKKRNM 63 (210)
Q Consensus 42 ~~l~~~g~~p~~I~~~l~~~~~ 63 (210)
+.|...|+++..|...|.+++|
T Consensus 70 VlL~~~gi~~~dV~~eL~~R~G 91 (91)
T d2a7wa1 70 VLLTYHGLRPEDVVMELHRREG 91 (91)
T ss_dssp HHHHHTTCCHHHHHHHHHHHCC
T ss_pred HHHHHCCCCHHHHHHHHHhcCC
Confidence 3456788888888888877664
No 35
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.19 E-value=34 Score=19.09 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=30.7
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
.+-+++|..|++|..+.-.+ +..+++ -+|||+.=++.++-.-+++.+-
T Consensus 15 ~~l~~~F~~~G~v~~~~i~~---------------~~~g~~--~g~afV~f~~~~~A~~Ai~~l~ 62 (78)
T d1no8a_ 15 ADIQELFAEFGTLKKAAVHY---------------DRSGRS--LGTADVHFERKADALKAMKQYN 62 (78)
T ss_dssp HHHHHHHHHHSCEEEEEESC---------------SSCCCS--CCEEEEEESCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEEE---------------eecccc--ceeEEEEECCHHHHHHHHHHhC
Confidence 45567889999887655322 222332 3577888778787777776654
No 36
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.03 E-value=49 Score=18.68 Aligned_cols=46 Identities=7% Similarity=-0.127 Sum_probs=27.7
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALE 184 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~ 184 (210)
.+-.+.|..|++|..+.-.+ | .....+-|||||.=++.++-.-+++
T Consensus 21 ~~l~~~F~~~G~i~~v~i~~---------------d-~~tg~~kG~afV~f~~~~~a~~ai~ 66 (84)
T d1l3ka1 21 ESLRSHFEQWGTLTDCVVMR---------------D-PNTKRSRGFGFVTYATVEEVDAAMN 66 (84)
T ss_dssp HHHHHHHGGGSCEEEEEEEE---------------C-TTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhccccceeecc---------------c-ccCCCcccEEEEEEcCHHHHHHHHH
Confidence 44557888999886533211 1 1222345778887777777766654
No 37
>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.46 E-value=54 Score=19.52 Aligned_cols=46 Identities=24% Similarity=0.183 Sum_probs=28.5
Q ss_pred hHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 125 AIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 125 ~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
-.++|.+||+|..+-- --+..+ .+-|+|||.=++.++=..+++.+-
T Consensus 44 l~e~f~k~G~I~~v~I---------------~~~~~~--~~~G~~fV~f~~~~~A~~Ai~~ln 89 (104)
T d1jmta_ 44 FTEMEEKYGEVEEMNV---------------CDNLGD--HLVGNVYVKFRREEDAEKAVIDLN 89 (104)
T ss_dssp HHHHHHHTCCEEEEEE---------------CCSSSS--SSEEEEEEEESCHHHHHHHHHHHT
T ss_pred HHHHhccCCCEEEEEe---------------ecCCCC--CEeeEEEEEEechhHHHHHHHHHC
Confidence 3467788888765211 112222 235888998888888777777654
No 38
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=27.23 E-value=32 Score=17.43 Aligned_cols=21 Identities=5% Similarity=0.259 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCChHHHHHHH
Q 040570 38 SNLLVDMSKNNVRPKDVLHVL 58 (210)
Q Consensus 38 k~~i~~l~~~g~~p~~I~~~l 58 (210)
.+.|..|.+.|+.+..|-..|
T Consensus 8 ~~~V~~L~~~G~gat~IAk~l 28 (43)
T d1gdta1 8 RDAVLNMWQQGLGASHISKTM 28 (43)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 467888999999999997765
No 39
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
Probab=27.03 E-value=1.3e+02 Score=23.26 Aligned_cols=70 Identities=7% Similarity=-0.095 Sum_probs=35.8
Q ss_pred EEEEecccccCcCCCceeeEEeeecCCceEEEE-EEeec--Cccchh---HHHHHHHHHHHHhcCCCCeEEEecCcc
Q 040570 135 VLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVC-CVYLK--LKWENN---YIWALERLKSIMEENMLASVIVTDREL 205 (210)
Q Consensus 135 vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~-~~~~~--~E~~e~---~~w~l~~~~~~~~~~~~p~~iitD~d~ 205 (210)
++-+|.|+.+..-+.-...++.+++.+.+.... +.+-. .|..+. +.-++..+.+..+ ...|..|+.-||.
T Consensus 231 IIGiDVth~~~~~~~~~g~a~v~~~~g~~~~~s~v~~q~~~~E~idl~~~i~~aL~~~~~~n~-~~~P~rIIIyRDG 306 (447)
T d1u04a2 231 IIGIDVAPMKRSEGYIGGSAVMFDSQGYIRKIVPIKIGEQRGESVDMNEFFKEMVDKFKEFNI-KLDNKKILLLRDG 306 (447)
T ss_dssp EEEEEEEEECCTTTCEEEEEEEEETTSCEEEEEEEECCCCSSSSCCHHHHHHHHHHHHHHTTC-CCTTCEEEEECSB
T ss_pred EEEEeccccCCCCeEEEEEEEEEeCCCceEEEEEEEccCCCCceecHHHHHHHHHHHHHHHhC-CCCCceEEEEECC
Confidence 677888886544333334455666776655432 22211 232221 2333333333322 2458888988885
No 40
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.25 E-value=41 Score=19.92 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=30.1
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
.+-.++|..|++++.+.-.+ .......-|||||.=++.+.-.-+++.+-
T Consensus 33 ~~l~~~F~~~G~i~~~~~~~----------------~~~~g~~kG~afV~f~~~~~A~~Ai~~ln 81 (102)
T d2cpza1 33 QDLLQMFMPFGNVVSAKVFI----------------DKQTNLSKCFGFVSYDNPVSAQAAIQSMN 81 (102)
T ss_dssp HHHHHHHGGGSCCSEEEEEE----------------CSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccccceee----------------ecccCCCccceEEEeCCHHHHHHHHHHhC
Confidence 45567888888765432211 11112334788998888888777776654
No 41
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.37 E-value=39 Score=19.95 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=28.6
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERL 186 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~ 186 (210)
.+-.++|..||+|..+ .+..+..+ ..-+||||.=++.++-.-+++.+
T Consensus 33 ~~L~~~F~~~G~i~~~---------------~~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l 79 (101)
T d1x5oa1 33 QELENMLKPFGQVIST---------------RILRDSSG--TSRGVGFARMESTEKCEAVIGHF 79 (101)
T ss_dssp HHHHHTTTTTSCEEEE---------------EEEECSSS--CEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccce---------------eeeccccc--ccccceeEEeCCHHHHHHHHHHh
Confidence 3445677778877541 12222222 34678899888888877776654
No 42
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.91 E-value=63 Score=18.53 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=29.5
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALER 185 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~ 185 (210)
.+-++.|..|++|..+.--+ | .....+-|||||.=++.++-.-+++.
T Consensus 23 ~~l~~~F~~~G~i~~v~i~~---------------d-~~tg~srG~aFV~f~~~~~a~~al~~ 69 (90)
T d2cqga1 23 QDLKEYFSTFGEVLMVQVKK---------------D-LKTGHSKGFGFVRFTEYETQVKVMSQ 69 (90)
T ss_dssp HHHHHHHGGGSCEEEEEEEE---------------C-SSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred HHHHHHHHhhcccceeeecc---------------C-CCCcccCCEEEEEECCHHHHHHHHhc
Confidence 44567889999886543222 1 11223457888887888887777653
No 43
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
Probab=23.61 E-value=63 Score=18.42 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=12.0
Q ss_pred chHHHHHHHHhhcccee
Q 040570 87 HSQMQLLMSKLIEQKYI 103 (210)
Q Consensus 87 ~~~~~~L~~~l~~~~~~ 103 (210)
.+.+..++..|.++|+.
T Consensus 41 ~tTv~T~L~rL~~KG~l 57 (82)
T d1p6ra_ 41 PKTIQTMLLRLIKKGAL 57 (82)
T ss_dssp HHHHHHHHHHHHHTTSE
T ss_pred HhHHHHHHHHHHHCCCe
Confidence 34567788888877764
No 44
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.49 E-value=28 Score=17.75 Aligned_cols=24 Identities=4% Similarity=0.077 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHhCCCChHHHHHH
Q 040570 34 NKEKSNLLVDMSKNNVRPKDVLHV 57 (210)
Q Consensus 34 t~~~k~~i~~l~~~g~~p~~I~~~ 57 (210)
|+++++.|..|..-|.+...++..
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqa 24 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQA 24 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHH
Confidence 567788899998889887776554
No 45
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=23.25 E-value=66 Score=19.43 Aligned_cols=65 Identities=17% Similarity=0.013 Sum_probs=32.2
Q ss_pred cEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCccc
Q 040570 134 RVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELA 206 (210)
Q Consensus 134 ~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d~a 206 (210)
++++.|+..+.|.- |=....+ ...++...... .+++.+- -=|.++..++.....|..|.||...+
T Consensus 9 ~t~ytDGs~~~n~~--~g~~g~~-~~~~~~~~~~~----~~~TNn~-aEl~Avi~aL~~~~~~v~I~TDS~yv 73 (110)
T d1s1ta1 9 ETFYVDGAANRETK--LGKAGYV-TNRGRQKVVTL----TDTTNQK-TELQAIYLALQDSGLEVNIVTDSQYA 73 (110)
T ss_dssp EEEEEEEEEETTTT--EEEEEEE-ETTSCEEEEEE----SSCCHHH-HHHHHHHHHHHHSCSEEEEEECCHHH
T ss_pred cEEEEeCCCCCCCC--CcEEEEE-EecCCeEEEec----ccCcHHH-HHHHHHHHHHHhCCCeEEEEEehHHH
Confidence 57788888765532 2221222 22333333221 2333322 22344445554456788999997654
No 46
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.08 E-value=44 Score=19.63 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=29.3
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKS 188 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~ 188 (210)
.+-.++|..|++|..++-. .. +||||.=++.+.-.-+++.|-.
T Consensus 30 ~~L~~~F~~~G~v~~~~i~-----------------~~------g~afV~f~~~~~a~~Ai~~lng 72 (98)
T d1wg4a_ 30 QDLKDHMREAGDVCYADVQ-----------------KD------GMGMVEYLRKEDMEYALRKLDD 72 (98)
T ss_dssp HHHHHHHTTSSCEEEEEEE-----------------TT------TEEEEEESSHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhccccccccc-----------------cc------ceEEEEECCHHHHHHHHHHhCC
Confidence 4556788889988766531 11 4788887888888777776543
No 47
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=22.65 E-value=48 Score=20.64 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=46.7
Q ss_pred HHhCCCChHH--HHHHHHHhCCCCcchHhHHhHHHHHHhhhhcccchHHHHHHHHhhccceeEEEeeecCCCceEEEEEe
Q 040570 44 MSKNNVRPKD--VLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLA 121 (210)
Q Consensus 44 l~~~g~~p~~--I~~~l~~~~~~~~~t~~di~N~~~k~~~~~~~g~~~~~~L~~~l~~~~~~~~~~~~d~~~~~~~lf~a 121 (210)
+.+.|+++.+ |+..+.+.. ..+..+|..... -..+.+..+++.|++.|++... ...+|++...|..+
T Consensus 26 l~~~gLt~~q~~vL~~l~~~~---~~t~~~La~~~~-------i~~~~vsr~i~~L~~~glv~r~-~~~~D~R~~~i~lT 94 (137)
T d1z91a1 26 LDKLNITYPQYLALLLLWEHE---TLTVKKMGEQLY-------LDSGTLTPMLKRMEQQGLITRK-RSEEDERSVLISLT 94 (137)
T ss_dssp HTTTCCCHHHHHHHHHHHHHS---EEEHHHHHHTTT-------CCHHHHHHHHHHHHHHTSEECC-BCSSCTTSBEEEEC
T ss_pred HHHcCcCHHHHHHHHHHHcCC---CCCHHHHHHHHC-------cCHHHHHHHHHHHhhccceEEe-ecCCCCCeEEEEEC
Confidence 3467999876 666666643 256666644322 1234577889999999987432 23457788777665
Q ss_pred ChhhHHHHHh
Q 040570 122 HPSAIELLQA 131 (210)
Q Consensus 122 ~~~~~~~~~~ 131 (210)
.. ..+++..
T Consensus 95 ~~-G~~~~~~ 103 (137)
T d1z91a1 95 ED-GALLKEK 103 (137)
T ss_dssp HH-HHSGGGG
T ss_pred HH-HHHHHHH
Confidence 43 3444543
No 48
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=22.64 E-value=58 Score=17.62 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHhCCCChHHHHHHHHHhCCCCcchHhHHhHHHHHHhh
Q 040570 32 ILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKV 81 (210)
Q Consensus 32 ~lt~~~k~~i~~l~~~g~~p~~I~~~l~~~~~~~~~t~~di~N~~~k~~~ 81 (210)
+||+.+.+ |..+...|.+.++|-..| .++.+.|.+.+.+..+
T Consensus 6 ~LT~rE~~-vl~ll~~G~s~~eIA~~l-------~iS~~TV~~~~~~i~~ 47 (67)
T d1a04a1 6 QLTPRERD-ILKLIAQGLPNKMIARRL-------DITESTVKVHVKHMLK 47 (67)
T ss_dssp GSCHHHHH-HHHHHHTTCCHHHHHHHH-------TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHH-HHHHHHhCCCHHHHHHHH-------CCCHHHHHHHHHHHHH
Confidence 58887666 445777899999997776 2455667666666544
No 49
>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.13 E-value=37 Score=21.74 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=52.1
Q ss_pred ecCCCceEEEEEeChhhHHHHHhCC----cEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHH
Q 040570 109 DVDTNCVKALFLAHPSAIELLQAFP----RVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALE 184 (210)
Q Consensus 109 ~d~~~~~~~lf~a~~~~~~~~~~f~----~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~ 184 (210)
+-+.|....|-+-++.+.++|..+| +-..+..+--++|| |.+-..|+.|+.-.+|.+|-.+.+.-+|.-+|+
T Consensus 49 v~~~g~~~~I~LeD~~tgeLFA~~P~~~~~~~aVE~v~DSSRY----FvlRv~d~~Gr~AfiGiGF~dR~dAFDFnvaLq 124 (133)
T d1tqza1 49 ITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRY----FVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQ 124 (133)
T ss_dssp EECCSSSEEEEEECSSCCSSCEEEEECSSCCCCEEECTTCCSC----EEEEEEETTTEEEEEEEECSCHHHHHHHHHHHH
T ss_pred EEEeCCeEEEEEecCCCcceEEeCccCCCCCcceEEeccCcce----EEEEEECCCCcEEEEEeeecccCcccchhhHHH
Confidence 3455666667777777777776543 12344555555554 556667789999999999988888888887776
Q ss_pred HHHHH
Q 040570 185 RLKSI 189 (210)
Q Consensus 185 ~~~~~ 189 (210)
-..+.
T Consensus 125 Dh~k~ 129 (133)
T d1tqza1 125 DHFKW 129 (133)
T ss_dssp HHHSC
T ss_pred HHHHH
Confidence 55443
No 50
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.66 E-value=36 Score=19.94 Aligned_cols=49 Identities=6% Similarity=0.107 Sum_probs=29.8
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
.+-+++|..|++|.-+.-.... ..+ .+-+||||.=++.++-.-+++.+-
T Consensus 23 ~~l~~~F~~~g~v~~v~i~~d~--------------~tg--~~~g~afV~f~~~~~a~~A~~~l~ 71 (99)
T d1whwa_ 23 EDLEKLFSAYGPLSELHYPIDS--------------LTK--KPKGFAFVTFMFPEHAVKAYAEVD 71 (99)
T ss_dssp HHHHHHHHTTSCEEEEECCCCT--------------TTC--CCCSEEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCceeeeecccc--------------ccc--ccCcceEEEECCHHHHHHHHHHcC
Confidence 3445688999998754432111 111 223578888788888777777653
No 51
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.59 E-value=63 Score=19.13 Aligned_cols=45 Identities=16% Similarity=0.026 Sum_probs=29.2
Q ss_pred hhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHH
Q 040570 124 SAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKS 188 (210)
Q Consensus 124 ~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~ 188 (210)
+-.++|..||+|.-+....+. . -++|||.=++.++=.-|++.+-.
T Consensus 23 ~L~~~F~~~G~i~~~~i~~~~----------------~----~g~aFV~f~~~e~A~~Ai~~ln~ 67 (108)
T d2adba1 23 VLHQIFSKFGTVLKIITFTKN----------------N----QFQALLQYADPVSAQHAKLSLDG 67 (108)
T ss_dssp HHHHHHTTTSCEEEEEEEEET----------------T----EEEEEEEESCHHHHHHHHHHHHS
T ss_pred HHHHHHccCCcEEEEEEEeeC----------------C----CCeEEEEECCHHHHHHHHHHHCC
Confidence 456788999998654332221 1 25789988888877777766543
No 52
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.41 E-value=64 Score=17.81 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=31.7
Q ss_pred cCCCCHHHHHHHHHHHhCCCChHHHHHHHHHhCCCCcchHhHHhHHHHHHh
Q 040570 30 AGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYK 80 (210)
Q Consensus 30 ~R~lt~~~k~~i~~l~~~g~~p~~I~~~l~~~~~~~~~t~~di~N~~~k~~ 80 (210)
-|.||.++|-.|....+.|-+.++ .-+.+.+|-...|..+|..-+.++.
T Consensus 5 Rk~LT~~eK~~ii~~~e~g~k~sq--~eIA~~fGv~~STvs~IlKnK~kil 53 (66)
T d1hlva1 5 RRQLTFREKSRIIQEVEENPDLRK--GEIARRFNIPPSTLSTILKNKRAIL 53 (66)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCH--HHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred cccCCHHHHHHHHHHHHcCCcchH--HHHHHHhCCChhHHHHHHHHHHHHH
Confidence 466999999999888888744332 1345556543467777766555543
No 53
>d2gu3a2 d.17.1.6 (A:34-98) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=20.32 E-value=57 Score=18.00 Aligned_cols=43 Identities=9% Similarity=-0.031 Sum_probs=32.3
Q ss_pred hhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEE
Q 040570 123 PSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSV 166 (210)
Q Consensus 123 ~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~ 166 (210)
.++++.-+.+.++-.+|+-|.=|. .-..+++.|.|..|+...+
T Consensus 6 e~A~~~Ak~~a~l~~v~~f~~YnG-~~tYyvv~G~n~~ge~i~V 48 (65)
T d2gu3a2 6 EAAAAEAKKETDLAHVDQVETFVG-KEKYYVVKGTDKKGTALYV 48 (65)
T ss_dssp HHHHHHHHHHSSEEEEEEEEEEES-SSEEEEEEEEETTCCEEEE
T ss_pred HHHHHHHHhccCceeeeeEEEEcC-ceEEEEEEeecCCCCEEEE
Confidence 345566677788888888766666 5567889999999999774
No 54
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.18 E-value=70 Score=18.31 Aligned_cols=48 Identities=15% Similarity=0.251 Sum_probs=30.5
Q ss_pred ChhhHHHHHhCCcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHH
Q 040570 122 HPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLK 187 (210)
Q Consensus 122 ~~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~ 187 (210)
..+-.++|..|++|..++-....+. +-+|||+.=++.+.-.-+++.+-
T Consensus 25 ~~~L~~~F~~~G~v~~v~~~~~~~~------------------~kg~afV~f~~~~~a~~Ai~~l~ 72 (93)
T d2cq3a1 25 DPDLRQMFGQFGKILDVEIIFNERG------------------SKGFGFVTFENSADADRAREKLH 72 (93)
T ss_dssp HHHHHHHGGGTSCEEEEEEECCTTT------------------TCCEEEEEESCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcceeeeccccccccC------------------CcceeEEEECCHHHHHHHHHHcC
Confidence 3455678899999876554333221 12577887777787776666543
Done!