Query 040572
Match_columns 142
No_of_seqs 102 out of 115
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 15:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s4o_A Protein tyrosine phosph 81.3 4.9 0.00017 27.0 6.1 33 94-126 118-151 (167)
2 2e0t_A Dual specificity phosph 79.0 3.2 0.00011 28.1 4.6 49 77-125 69-126 (151)
3 3emu_A Leucine rich repeat and 74.2 13 0.00045 26.1 6.9 62 66-127 61-130 (161)
4 1g2y_A Hepatocyte nuclear fact 71.4 2.2 7.6E-05 25.9 1.9 15 88-102 13-27 (32)
5 1zzw_A Dual specificity protei 70.4 10 0.00035 25.6 5.4 50 78-127 69-126 (149)
6 3rgo_A Protein-tyrosine phosph 68.7 11 0.00037 25.3 5.2 52 76-127 73-132 (157)
7 3b9q_A Chloroplast SRP recepto 68.5 11 0.00037 29.7 5.9 41 87-127 16-60 (302)
8 2hxp_A Dual specificity protei 65.4 14 0.00048 25.5 5.4 50 78-127 71-128 (155)
9 1rxd_A Protein tyrosine phosph 65.0 5 0.00017 26.8 2.9 30 95-124 106-135 (159)
10 1zu4_A FTSY; GTPase, signal re 63.8 16 0.00056 29.0 6.1 44 86-129 20-66 (320)
11 1yz4_A DUSP15, dual specificit 63.7 6.2 0.00021 27.2 3.2 48 79-126 71-126 (160)
12 2og2_A Putative signal recogni 63.2 15 0.0005 30.2 5.9 47 81-127 67-117 (359)
13 3mdm_A Cholesterol 24-hydroxyl 62.9 11 0.00038 28.8 4.8 47 83-129 243-289 (456)
14 2hcm_A Dual specificity protei 62.1 12 0.00042 25.8 4.6 50 78-127 75-132 (164)
15 2esb_A Dual specificity protei 61.9 12 0.00041 26.9 4.6 60 68-127 73-140 (188)
16 1njg_A DNA polymerase III subu 61.8 32 0.0011 22.8 6.6 46 80-127 189-234 (250)
17 2i6j_A Ssoptp, sulfolobus solf 61.3 5.9 0.0002 26.7 2.7 36 91-126 93-131 (161)
18 2wgp_A Dual specificity protei 60.6 10 0.00035 27.5 4.1 49 79-127 90-146 (190)
19 3s4e_A Dual specificity protei 60.2 6.2 0.00021 26.8 2.7 52 76-127 65-124 (144)
20 3c1q_A General secretion pathw 59.8 13 0.00043 24.8 4.1 44 79-126 12-56 (123)
21 3rz2_A Protein tyrosine phosph 58.9 6.8 0.00023 28.0 2.8 34 91-124 121-156 (189)
22 2whn_A PILC, pilus assembly pr 58.2 35 0.0012 22.1 6.0 46 79-127 13-58 (116)
23 1yn9_A BVP, polynucleotide 5'- 58.1 10 0.00035 26.4 3.6 34 95-128 123-157 (169)
24 4hbl_A Transcriptional regulat 57.6 32 0.0011 22.9 5.9 59 69-127 3-82 (149)
25 3nme_A Ptpkis1 protein, SEX4 g 56.7 37 0.0013 26.7 7.0 56 72-127 85-149 (294)
26 2oud_A Dual specificity protei 56.4 24 0.00083 24.9 5.4 51 77-127 72-130 (177)
27 2img_A Dual specificity protei 56.2 15 0.00051 24.2 4.0 32 95-126 99-131 (151)
28 2a7w_A PRA-PH, phosphoribosyl- 56.1 23 0.00079 25.9 5.3 34 83-127 59-92 (116)
29 1wrm_A Dual specificity phosph 56.0 15 0.00052 25.5 4.2 49 79-127 70-126 (165)
30 3n9y_A Cholesterol SIDE-chain 54.7 7.8 0.00027 29.9 2.7 44 83-126 275-318 (487)
31 3k9v_A 1,25-dihydroxyvitamin D 54.0 8.2 0.00028 29.5 2.7 47 83-129 283-329 (482)
32 1yxb_A PRA-PH, phosphoribosyl- 54.0 13 0.00045 26.5 3.6 31 83-121 60-90 (98)
33 1yvw_A PRA-PH, phosphoribosyl- 54.0 26 0.0009 25.6 5.3 33 83-123 58-90 (115)
34 3nxu_A Cytochrome P450 3A4; al 53.6 8.3 0.00028 29.7 2.7 46 83-128 272-317 (485)
35 3f81_A Dual specificity protei 52.7 9.6 0.00033 26.6 2.7 49 78-126 100-157 (183)
36 2x4h_A Hypothetical protein SS 52.2 47 0.0016 21.8 7.9 54 73-126 73-127 (139)
37 1vma_A Cell division protein F 51.8 28 0.00096 27.6 5.6 40 87-126 33-74 (306)
38 1xri_A AT1G05000; structural g 50.1 30 0.001 23.2 4.8 37 91-127 96-134 (151)
39 3nqo_A MARR-family transcripti 48.7 67 0.0023 22.6 7.0 45 75-119 11-65 (189)
40 3e6i_A CYPIIE1, P450-J, cytoch 48.2 8.6 0.00029 29.4 2.0 47 83-129 267-313 (476)
41 1fpz_A Cyclin-dependent kinase 48.0 23 0.00078 25.6 4.2 31 95-125 143-175 (212)
42 2ktg_A Calmodulin, putative; e 45.6 44 0.0015 19.5 4.9 54 67-124 5-59 (85)
43 4erc_A Dual specificity protei 45.4 20 0.00069 23.7 3.3 50 78-127 74-131 (150)
44 2nt2_A Protein phosphatase sli 44.2 29 0.00099 23.3 4.0 49 79-127 68-124 (145)
45 3tbg_A Cytochrome P450 2D6; mo 43.2 11 0.00039 28.7 2.0 46 83-128 272-317 (479)
46 1b25_A Protein (formaldehyde f 43.1 42 0.0014 29.8 5.9 45 82-126 322-379 (619)
47 1r9o_A Cytochrome P450 2C9; mo 42.8 12 0.00039 29.1 2.0 46 83-128 269-314 (477)
48 3pm0_A Cypib1, cytochrome P450 42.8 9.8 0.00033 29.4 1.6 46 83-128 279-324 (507)
49 3r0j_A Possible two component 42.2 36 0.0012 24.3 4.4 49 82-130 182-230 (250)
50 1po5_A Cytochrome P450 2B4; ox 41.7 12 0.00042 29.1 2.0 47 83-129 268-314 (476)
51 2r0b_A Serine/threonine/tyrosi 41.3 34 0.0012 23.0 4.0 33 94-126 99-132 (154)
52 1j8m_F SRP54, signal recogniti 41.2 44 0.0015 26.1 5.1 33 95-127 19-56 (297)
53 1n97_A CYP175A1; electron tran 41.2 22 0.00075 27.2 3.3 43 83-125 210-252 (389)
54 2h09_A Transcriptional regulat 40.8 74 0.0025 21.4 5.6 49 77-125 101-150 (155)
55 3p01_A Two-component response 40.7 28 0.00095 23.4 3.5 28 73-100 20-47 (184)
56 1x91_A Invertase/pectin methyl 40.4 55 0.0019 22.2 5.0 41 84-126 52-95 (153)
57 1sfx_A Conserved hypothetical 40.1 54 0.0019 19.9 4.5 34 94-127 16-61 (109)
58 3gw9_A Sterol 14alpha-demethyl 39.9 13 0.00045 28.0 1.9 45 83-127 253-299 (450)
59 3d7i_A Carboxymuconolactone de 39.9 76 0.0026 20.6 6.5 45 79-123 20-85 (105)
60 3dtp_E RLC, myosin regulatory 39.4 61 0.0021 22.3 5.1 61 57-121 38-99 (196)
61 3qz1_A Steroid 21-hydroxylase; 38.7 15 0.0005 28.4 2.0 45 83-127 279-323 (496)
62 3rjp_A COVR; winged helix-turn 38.3 42 0.0014 21.3 3.9 51 81-131 27-77 (96)
63 3czh_A Cytochrome P450 2R1; vi 38.0 15 0.00051 28.8 2.0 46 83-128 273-318 (481)
64 3k2n_A Sigma-54-dependent tran 37.8 36 0.0012 21.9 3.6 29 80-108 3-32 (177)
65 2fdv_A Cytochrome P450 2A6; CY 37.8 15 0.00052 28.5 2.0 47 83-129 268-314 (476)
66 2d8d_A Aroag, phospho-2-dehydr 37.6 45 0.0015 21.9 4.0 64 67-130 12-83 (90)
67 3u2r_A Regulatory protein MARR 37.0 36 0.0012 23.0 3.6 27 93-119 41-70 (168)
68 2ve3_A Putative cytochrome P45 36.9 16 0.00055 28.3 2.0 46 83-128 243-288 (444)
69 1xg2_B Pectinesterase inhibito 36.2 89 0.003 20.9 5.5 42 83-126 51-95 (153)
70 1vke_A Carboxymuconolactone de 36.0 1.1E+02 0.0039 21.5 6.9 31 93-123 50-98 (133)
71 2oz6_A Virulence factor regula 36.0 25 0.00086 23.8 2.6 19 111-129 175-193 (207)
72 3swz_A Steroid 17-alpha-hydrox 35.7 17 0.00059 28.2 2.0 47 83-129 273-319 (494)
73 3dfg_A Xcrecx, regulatory prot 35.6 23 0.0008 25.6 2.6 32 97-128 31-62 (162)
74 3s79_A Cytochrome P450 19A1; o 35.3 18 0.00061 28.0 2.0 47 83-129 295-341 (503)
75 3i3k_A Lanosterol 14-alpha dem 35.2 18 0.00062 27.8 2.0 47 83-129 252-298 (461)
76 2yhs_A FTSY, cell division pro 34.9 74 0.0025 27.9 6.0 40 88-127 214-255 (503)
77 2g6z_A Dual specificity protei 34.8 33 0.0011 25.9 3.4 50 78-127 69-126 (211)
78 2hi4_A Cytochrome P450 1A2; CY 34.6 15 0.00051 28.8 1.5 46 83-128 282-327 (495)
79 3ld6_A Lanosterol 14-alpha dem 34.4 19 0.00064 27.9 2.0 46 83-128 252-297 (461)
80 2ilr_A Protein FACE, fanconi a 33.9 1.2E+02 0.0041 24.8 6.8 58 64-130 149-210 (264)
81 2gxg_A 146AA long hypothetical 33.7 83 0.0028 20.2 4.8 36 93-128 32-78 (146)
82 1tc3_C Protein (TC3 transposas 33.0 55 0.0019 17.0 4.3 14 111-124 32-45 (51)
83 2hwv_A DNA-binding response re 32.9 71 0.0024 21.7 4.6 51 80-130 47-97 (121)
84 3dv8_A Transcriptional regulat 32.9 30 0.001 23.6 2.7 19 111-129 180-198 (220)
85 2ij2_A Cytochrome P450 BM3; mo 32.9 20 0.0007 28.0 2.0 45 83-127 253-297 (470)
86 3tgn_A ADC operon repressor AD 32.8 61 0.0021 20.9 4.1 26 94-119 34-59 (146)
87 2hr3_A Probable transcriptiona 32.6 1E+02 0.0034 19.9 6.4 36 93-128 30-78 (147)
88 4ev0_A Transcription regulator 32.6 30 0.001 23.5 2.6 19 111-129 174-192 (216)
89 2cib_A Cytochrome P450 51; hem 32.6 21 0.00071 27.8 2.0 45 83-127 245-289 (455)
90 3dbg_A Putative cytochrome P45 32.5 21 0.00072 27.7 2.0 44 83-126 263-306 (467)
91 1jko_C HIN recombinase, DNA-in 32.2 43 0.0015 17.9 2.8 13 110-122 31-43 (52)
92 3e97_A Transcriptional regulat 32.1 32 0.0011 23.9 2.7 31 94-129 174-204 (231)
93 2c46_A MRNA capping enzyme; ph 32.0 45 0.0015 25.5 3.8 32 95-126 151-183 (241)
94 3v8d_A Cholesterol 7-alpha-mon 32.0 23 0.00078 27.6 2.1 45 83-127 257-301 (491)
95 1rj9_A FTSY, signal recognitio 31.9 52 0.0018 25.9 4.2 31 98-128 29-60 (304)
96 2fbk_A Transcriptional regulat 31.6 65 0.0022 22.2 4.3 28 93-120 64-95 (181)
97 2gau_A Transcriptional regulat 31.6 33 0.0011 23.8 2.7 20 110-129 190-209 (232)
98 1y6x_A Phosphoribosyl-ATP pyro 31.6 51 0.0017 23.1 3.7 28 83-118 63-90 (93)
99 3ryp_A Catabolite gene activat 31.5 33 0.0011 23.2 2.7 20 110-129 177-196 (210)
100 1p8c_A Conserved hypothetical 30.9 1.5E+02 0.005 21.3 6.8 44 79-122 44-107 (145)
101 3iwz_A CAP-like, catabolite ac 30.7 35 0.0012 23.5 2.7 20 110-129 197-216 (230)
102 2ev1_A Hypothetical protein RV 30.7 31 0.0011 27.5 2.7 28 97-124 119-146 (222)
103 1j7q_A CAVP, calcium vector pr 30.4 83 0.0028 18.5 4.1 51 68-122 6-60 (86)
104 4fb2_A P450CIN; heme, monooxyg 30.3 23 0.00079 27.2 1.9 41 83-123 221-261 (398)
105 3oo3_A OXY protein; cytochrome 30.0 20 0.00069 27.2 1.5 39 83-121 215-253 (384)
106 2z9m_A Response regulator YYCF 29.6 60 0.0021 21.7 3.7 51 80-130 40-90 (120)
107 2zxj_A Transcriptional regulat 28.8 77 0.0026 22.0 4.3 53 79-131 39-91 (120)
108 3lxh_A Cytochrome P450; heme, 28.8 34 0.0012 26.5 2.6 41 83-123 245-285 (421)
109 3d0s_A Transcriptional regulat 28.5 39 0.0013 23.4 2.6 29 96-129 178-206 (227)
110 1s1f_A Putative cytochrome P45 28.4 35 0.0012 26.4 2.6 37 83-120 231-267 (406)
111 1khy_A CLPB protein; alpha hel 28.4 1.3E+02 0.0045 19.9 6.6 21 107-127 126-146 (148)
112 2zcw_A TTHA1359, transcription 28.3 40 0.0014 23.0 2.7 19 111-129 157-175 (202)
113 2lkp_A Transcriptional regulat 28.1 1.2E+02 0.004 19.6 4.8 30 97-126 31-71 (119)
114 3zq7_A KDP operon transcriptio 28.0 50 0.0017 21.1 3.0 50 81-130 33-82 (102)
115 2jzy_A Transcriptional regulat 27.9 60 0.0021 21.5 3.4 51 80-130 32-82 (112)
116 3jw4_A Transcriptional regulat 27.8 75 0.0026 20.8 3.8 27 93-119 36-65 (148)
117 2fmy_A COOA, carbon monoxide o 27.8 41 0.0014 23.2 2.6 30 95-129 167-196 (220)
118 1okr_A MECI, methicillin resis 27.5 1.1E+02 0.0039 19.4 4.7 22 88-109 99-121 (123)
119 3ezz_A Dual specificity protei 27.5 45 0.0016 22.2 2.8 50 77-126 66-123 (144)
120 1wpn_A Manganese-dependent ino 27.5 80 0.0027 22.4 4.2 29 95-123 157-186 (188)
121 2hiv_A Thermostable DNA ligase 27.2 55 0.0019 28.8 3.9 49 74-123 32-92 (621)
122 1ft9_A Carbon monoxide oxidati 27.2 42 0.0015 23.2 2.6 30 96-130 164-193 (222)
123 3jtz_A Integrase; four strande 27.0 36 0.0012 22.8 2.2 11 89-99 72-82 (88)
124 3bey_A Conserved protein O2701 26.9 1.2E+02 0.0042 19.1 6.9 31 93-123 29-77 (96)
125 3b02_A Transcriptional regulat 26.9 33 0.0011 23.4 2.0 20 110-129 149-168 (195)
126 1sd4_A Penicillinase repressor 26.7 1.3E+02 0.0044 19.3 5.1 34 76-109 81-121 (126)
127 1r7j_A Conserved hypothetical 26.5 1.4E+02 0.0048 19.7 5.5 43 81-128 6-48 (95)
128 2k27_A Paired box protein PAX- 26.4 1.5E+02 0.0053 20.1 5.4 45 93-139 99-150 (159)
129 3la7_A Global nitrogen regulat 26.3 44 0.0015 23.8 2.7 19 111-129 204-222 (243)
130 3dax_A Cytochrome P450 7A1; ch 26.3 33 0.0011 26.4 2.1 41 87-127 261-301 (491)
131 1zyb_A Transcription regulator 26.2 44 0.0015 23.5 2.6 19 111-129 197-215 (232)
132 3gpv_A Transcriptional regulat 26.1 1.5E+02 0.0053 20.9 5.5 34 79-112 57-90 (148)
133 3dkw_A DNR protein; CRP-FNR, H 25.9 36 0.0012 23.4 2.0 20 110-129 188-207 (227)
134 3ejb_B Biotin biosynthesis cyt 25.7 25 0.00086 26.8 1.3 39 83-121 223-261 (404)
135 2xxa_A Signal recognition part 25.7 81 0.0028 26.2 4.5 36 94-129 20-60 (433)
136 2chg_A Replication factor C sm 25.6 1.4E+02 0.005 19.5 6.8 46 80-127 165-210 (226)
137 1u2w_A CADC repressor, cadmium 25.4 1.5E+02 0.0052 19.7 6.1 59 69-127 11-83 (122)
138 2frh_A SARA, staphylococcal ac 25.4 23 0.00079 23.5 1.0 38 93-130 32-83 (127)
139 2i53_A Cyclin K; cell cycle, t 25.0 2.1E+02 0.0071 21.1 6.3 41 67-109 29-70 (258)
140 3ivy_A Cytochrome P450 CYP125; 25.0 40 0.0014 26.4 2.4 42 83-124 257-298 (433)
141 2wm5_A CYP124, putative cytoch 24.9 45 0.0015 26.3 2.7 42 83-124 263-304 (435)
142 3m66_A Mterf3, mterf domain-co 24.8 36 0.0012 25.7 2.0 23 99-121 40-62 (270)
143 3fx3_A Cyclic nucleotide-bindi 24.7 47 0.0016 23.1 2.5 19 110-128 188-206 (237)
144 2uuq_A CYP130, cytochrome P450 24.7 35 0.0012 26.6 2.0 39 83-121 239-277 (414)
145 1hqc_A RUVB; extended AAA-ATPa 24.5 2.1E+02 0.0071 20.9 6.4 47 80-128 172-218 (324)
146 1gxq_A PHOB, phosphate regulon 24.4 64 0.0022 20.9 3.0 51 80-130 35-85 (106)
147 2cwq_A Hypothetical protein TT 24.2 1.7E+02 0.0057 20.3 5.3 37 87-123 62-117 (137)
148 2ivx_A Cyclin-T2; transcriptio 24.0 2.1E+02 0.0073 21.2 6.2 41 67-109 19-60 (257)
149 2px0_A Flagellar biosynthesis 23.9 62 0.0021 25.2 3.3 20 105-124 47-66 (296)
150 3eco_A MEPR; mutlidrug efflux 23.8 1.5E+02 0.005 18.9 5.3 36 93-128 26-75 (139)
151 3trc_A Phosphoenolpyruvate-pro 23.6 75 0.0026 20.0 3.1 23 78-100 3-25 (171)
152 2e8n_A Ephrin type-A receptor 23.5 44 0.0015 22.0 2.1 35 106-140 49-87 (88)
153 2y96_A Dual specificity phosph 23.4 61 0.0021 24.1 3.1 50 76-125 122-180 (219)
154 1sxj_D Activator 1 41 kDa subu 23.3 1.1E+02 0.0037 22.6 4.3 41 85-125 268-309 (353)
155 2kr5_A PKS, aflatoxin biosynth 23.1 23 0.00079 21.8 0.6 44 85-130 17-60 (89)
156 3kcc_A Catabolite gene activat 23.1 55 0.0019 23.7 2.7 20 110-129 227-246 (260)
157 3e6c_C CPRK, cyclic nucleotide 23.0 56 0.0019 23.2 2.7 19 111-129 188-206 (250)
158 2r9i_A Putative phage capsid p 23.0 69 0.0024 24.5 3.3 25 64-88 25-50 (141)
159 2xbk_A PIMD protein; epoxidati 23.0 47 0.0016 26.0 2.5 38 83-120 230-267 (404)
160 3a4g_A Vitamin D hydroxylase; 22.8 40 0.0014 26.3 2.0 38 83-120 225-262 (411)
161 1t6s_A Conserved hypothetical 22.8 1.3E+02 0.0044 22.5 4.8 46 77-128 7-52 (162)
162 2pmu_A Response regulator PHOP 22.7 76 0.0026 20.8 3.1 51 80-130 38-88 (110)
163 2wiy_A XPLA-heme, cytochrome P 22.6 55 0.0019 25.2 2.8 37 84-120 223-259 (394)
164 2xkr_A CYP142, putative cytoch 22.6 30 0.001 26.5 1.3 37 84-120 220-256 (398)
165 1g6u_A Domain swapped dimer; d 22.5 1.1E+02 0.0038 19.6 3.8 22 104-125 9-30 (48)
166 1ka2_A M32 carboxypeptidase; h 22.5 1.4E+02 0.0049 26.1 5.6 48 78-127 135-182 (499)
167 3gp4_A Transcriptional regulat 22.4 2E+02 0.0067 20.3 5.5 34 79-112 43-76 (142)
168 3b6h_A Prostacyclin synthase; 22.4 59 0.002 25.2 2.9 41 87-127 266-306 (498)
169 2p6x_A Tyrosine-protein phosph 22.2 67 0.0023 25.4 3.2 53 78-130 202-271 (309)
170 3oft_A Cytochrome P450, CYP101 22.2 25 0.00085 26.8 0.7 38 84-121 224-261 (396)
171 3q9s_A DNA-binding response re 22.2 1.1E+02 0.0037 22.1 4.1 50 81-130 187-236 (249)
172 1no1_A G39P, replisome organiz 21.9 2.4E+02 0.0082 20.7 6.3 48 79-126 4-55 (126)
173 2dlx_A UBX domain-containing p 21.7 91 0.0031 22.3 3.6 31 110-140 120-152 (153)
174 3bos_A Putative DNA replicatio 21.6 1.9E+02 0.0066 19.5 5.7 45 80-126 178-222 (242)
175 1ub9_A Hypothetical protein PH 21.5 1.3E+02 0.0044 18.2 3.9 18 111-128 41-58 (100)
176 3iqc_A FLIS, flagellar protein 21.4 1.8E+02 0.0061 20.7 5.1 48 74-125 55-116 (131)
177 3neu_A LIN1836 protein; struct 21.1 1.2E+02 0.0042 20.5 4.0 26 102-127 98-123 (125)
178 2cd8_A Cytochrome P450 monooxy 21.0 55 0.0019 25.7 2.5 38 83-120 252-289 (436)
179 1ywf_A Phosphotyrosine protein 21.0 81 0.0028 24.8 3.5 29 90-118 176-206 (296)
180 2bgc_A PRFA; bacterial infecti 21.0 58 0.002 23.0 2.4 30 95-129 169-199 (238)
181 3omd_A Uncharacterized protein 20.9 32 0.0011 26.0 1.0 23 93-121 47-69 (145)
182 2z3t_A Cytochrome P450; monoxy 20.8 51 0.0017 25.8 2.2 38 83-120 243-280 (425)
183 2k4j_A Putative transcriptiona 20.7 74 0.0025 21.4 2.8 51 80-130 45-95 (115)
184 3ret_A Salicylate biosynthesis 20.7 1.8E+02 0.0063 19.4 4.8 61 67-127 17-85 (101)
185 2liu_A CURA; holo state, trans 20.5 16 0.00054 22.8 -0.6 22 106-127 46-67 (99)
186 1aor_A Aldehyde ferredoxin oxi 20.5 1.7E+02 0.0057 25.9 5.7 44 82-125 327-390 (605)
187 3tkt_A Cytochrome P450; aromat 20.4 36 0.0012 26.9 1.3 37 84-120 279-315 (450)
188 3rmi_A Chorismate mutase prote 20.3 2.3E+02 0.0077 19.7 5.7 61 67-127 21-90 (114)
189 3us6_A Histidine-containing ph 20.1 98 0.0033 22.3 3.5 40 86-127 12-52 (153)
190 1uxc_A FRUR (1-57), fructose r 20.1 1.7E+02 0.0058 18.3 4.8 38 86-125 4-43 (65)
191 2z36_A MOXA, cytochrome P450 t 20.0 50 0.0017 25.8 2.0 38 83-120 234-271 (413)
No 1
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=81.28 E-value=4.9 Score=27.05 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Q 040572 94 TGLDRHTLSVLIALCDL-GVNPEALAAVVKELQR 126 (142)
Q Consensus 94 TGLDReTLsICI~LcE~-GVNPEALA~VIKELRr 126 (142)
.|.+|...-+++-|+.. |++++...+.|++.|.
T Consensus 118 aG~~RTg~~~a~~L~~~~~~~~~~a~~~vr~~R~ 151 (167)
T 3s4o_A 118 AGLGRAPILVALALVEYGNVSALDAIALIREKRK 151 (167)
T ss_dssp SSSSHHHHHHHHHHHHTTCCCHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 39999999999999998 9999988777777664
No 2
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=79.03 E-value=3.2 Score=28.11 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHH------HhcC--CCCHHH-HHHHHHHHhCCCCHHHHHHHHHHHH
Q 040572 77 TARESLDLAFHMSN------ILDT--GLDRHT-LSVLIALCDLGVNPEALAAVVKELQ 125 (142)
Q Consensus 77 aArEtLDiL~EIS~------LLNT--GLDReT-LsICI~LcE~GVNPEALA~VIKELR 125 (142)
.-.++++.+.+.-. |+.| |.||.. +.+++-|...|++++.--+.|+..|
T Consensus 69 ~~~~~~~~i~~~~~~~~~~vlVHC~aG~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~R 126 (151)
T 2e0t_A 69 HFQTAADFIHRALSQPGGKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHR 126 (151)
T ss_dssp HHHHHHHHHHHHHHSTTCCEEEECSSSSHHHHHHHHHHHHHHSCCCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEECCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 34455555554421 3444 999998 6667677789999887666666655
No 3
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=74.20 E-value=13 Score=26.07 Aligned_cols=62 Identities=6% Similarity=0.108 Sum_probs=42.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH-----HhcC--CCCHH-HHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 66 LVDDMDPEAARTARESLDLAFHMSN-----ILDT--GLDRH-TLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 66 ~~~~md~d~~~aArEtLDiL~EIS~-----LLNT--GLDRe-TLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
+.|..+.+..+.-.++++.|.+.-+ |+.| |++|. ++.+++-|...|++.+.--+.|++.|-.
T Consensus 61 i~D~~~~~l~~~~~~~~~fI~~~~~~~~~VlVHC~~G~sRS~~vv~ayLm~~~~~s~~~A~~~v~~~Rp~ 130 (161)
T 3emu_A 61 IVSEEGHQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAIVIAFLMYYQRLSFINAFNKVQGLYPL 130 (161)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHHHHTTCEEEEEESSSSSHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTT
T ss_pred CcCCCCCcHHHHHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHCCC
Confidence 3455566666666777777766321 3444 99996 5566666678999998877788887754
No 4
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=71.37 E-value=2.2 Score=25.93 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=12.8
Q ss_pred HHHHhcCCCCHHHHH
Q 040572 88 MSNILDTGLDRHTLS 102 (142)
Q Consensus 88 IS~LLNTGLDReTLs 102 (142)
+..||+.||+||+|-
T Consensus 13 L~aLL~SGlsKe~Li 27 (32)
T 1g2y_A 13 LAALLESGLSKEALI 27 (32)
T ss_dssp HHHHHHTTCCHHHHH
T ss_pred HHHHHHcCCcHHHHH
Confidence 678999999999874
No 5
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=70.37 E-value=10 Score=25.58 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHH-----HhcC--CCCHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhC
Q 040572 78 ARESLDLAFHMSN-----ILDT--GLDRHTLSVLIALC-DLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 78 ArEtLDiL~EIS~-----LLNT--GLDReTLsICI~Lc-E~GVNPEALA~VIKELRrE 127 (142)
-.++++.+.+.-+ |+.| |.+|...-++.-|+ ..|++++..-..|++.|-.
T Consensus 69 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~R~~ 126 (149)
T 1zzw_A 69 FEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPI 126 (149)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCc
Confidence 3455555554422 3444 99999887665555 5899988777777777643
No 6
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=68.69 E-value=11 Score=25.26 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHH-----HhcC--CCCHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhC
Q 040572 76 RTARESLDLAFHMSN-----ILDT--GLDRHTLSVLIALC-DLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 76 ~aArEtLDiL~EIS~-----LLNT--GLDReTLsICI~Lc-E~GVNPEALA~VIKELRrE 127 (142)
..-.++++.+.+.-+ |+.| |.+|...-++.-|+ ..|++++...+.|++.|..
T Consensus 73 ~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~~a~l~~~~~~~~~~a~~~v~~~R~~ 132 (157)
T 3rgo_A 73 ANLHKGVQFALKYQALGQCVYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSH 132 (157)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 344555665555432 2344 99999877555554 4899999888888887753
No 7
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=68.49 E-value=11 Score=29.68 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=33.5
Q ss_pred HHHHHhc--CCCC-HHHH-HHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 87 HMSNILD--TGLD-RHTL-SVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 87 EIS~LLN--TGLD-ReTL-sICI~LcE~GVNPEALA~VIKELRrE 127 (142)
.|.+++. ..+| .+.+ .+...|+++||+++....++.+++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~ 60 (302)
T 3b9q_A 16 VIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLRED 60 (302)
T ss_dssp HHHHHHTTCCGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 6777774 4588 7776 58899999999999999999988764
No 8
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Probab=65.44 E-value=14 Score=25.52 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHH-----HhcC--CCCHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhC
Q 040572 78 ARESLDLAFHMSN-----ILDT--GLDRHTLSVLIAL-CDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 78 ArEtLDiL~EIS~-----LLNT--GLDReTLsICI~L-cE~GVNPEALA~VIKELRrE 127 (142)
-.++++.+.+.-+ |+.| |++|...-++.-| ...|++++.--..|++.|..
T Consensus 71 ~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~A~~~v~~~R~~ 128 (155)
T 2hxp_A 71 FPEAIEFIDEALSQNCGVLVHSLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKKSN 128 (155)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 3455666555422 3334 9999985544434 46799988776777777654
No 9
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=64.96 E-value=5 Score=26.80 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040572 95 GLDRHTLSVLIALCDLGVNPEALAAVVKEL 124 (142)
Q Consensus 95 GLDReTLsICI~LcE~GVNPEALA~VIKEL 124 (142)
|.||...-+++-|+..|++++...+.|++.
T Consensus 106 G~~Rtg~~~a~~l~~~~~~~~~a~~~vr~~ 135 (159)
T 1rxd_A 106 GLGRAPVLVALALIEGGMKYEDAVQFIRQK 135 (159)
T ss_dssp SSTTHHHHHHHHHHHTTCCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999988644444433
No 10
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=63.82 E-value=16 Score=29.01 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=35.6
Q ss_pred HHHHHHhc--CCCCHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 86 FHMSNILD--TGLDRHTL-SVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 86 ~EIS~LLN--TGLDReTL-sICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
..|+.++. ..+|.+.| .+...|++++|+++....++.+|+++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~ 66 (320)
T 1zu4_A 20 KDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLKVSNLVRKKTK 66 (320)
T ss_dssp HHHHHHHHTCCCCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 34556664 46999987 5889999999999999999999987654
No 11
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=63.68 E-value=6.2 Score=27.24 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHH-----HhcC--CCCHHHH-HHHHHHHhCCCCHHHHHHHHHHHHh
Q 040572 79 RESLDLAFHMSN-----ILDT--GLDRHTL-SVLIALCDLGVNPEALAAVVKELQR 126 (142)
Q Consensus 79 rEtLDiL~EIS~-----LLNT--GLDReTL-sICI~LcE~GVNPEALA~VIKELRr 126 (142)
.++++.+.+.-+ |+.| |++|... .+++-|...|++++.--+.|+..|.
T Consensus 71 ~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~~aylm~~~~~~~~~a~~~v~~~R~ 126 (160)
T 1yz4_A 71 KECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRP 126 (160)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETTSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHCC
Confidence 445555554322 3344 9999974 4455555689998765566665553
No 12
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=63.19 E-value=15 Score=30.17 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHh--cCCCC-HHHH-HHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 81 SLDLAFHMSNIL--DTGLD-RHTL-SVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 81 tLDiL~EIS~LL--NTGLD-ReTL-sICI~LcE~GVNPEALA~VIKELRrE 127 (142)
+++.|..++.|+ ...+| .+.+ .+...|+++||+++....+|.+|+++
T Consensus 67 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~ 117 (359)
T 2og2_A 67 TRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLRED 117 (359)
T ss_dssp HHHHHTHHHHHHTTCCGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 333344777776 35688 7776 46789999999999999999998864
No 13
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=62.89 E-value=11 Score=28.82 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+-.||..-..
T Consensus 243 ~l~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~ 289 (456)
T 3mdm_A 243 GLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIG 289 (456)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC
Confidence 45666777888899999888888899999999999999888876443
No 14
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}
Probab=62.08 E-value=12 Score=25.77 Aligned_cols=50 Identities=10% Similarity=0.020 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHH-----HhcC--CCCHHHHH-HHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 78 ARESLDLAFHMSN-----ILDT--GLDRHTLS-VLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 78 ArEtLDiL~EIS~-----LLNT--GLDReTLs-ICI~LcE~GVNPEALA~VIKELRrE 127 (142)
-.++++.+...-+ |+.| |.+|...- +|+-|...|++++.--..|++.|-.
T Consensus 75 ~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~~ayLm~~~~~~~~~A~~~v~~~R~~ 132 (164)
T 2hcm_A 75 LEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHSLDRAFQMVKSARPV 132 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSSHHHHHHHHHHHHHHSCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCC
Confidence 3455555554321 3344 99998854 4555556899988766777776654
No 15
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}
Probab=61.92 E-value=12 Score=26.95 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-----HhcC--CCCHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 68 DDMDPEAARTARESLDLAFHMSN-----ILDT--GLDRHTL-SVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 68 ~~md~d~~~aArEtLDiL~EIS~-----LLNT--GLDReTL-sICI~LcE~GVNPEALA~VIKELRrE 127 (142)
|..+.+..+.-.++++.+.+.-. |+.| |++|... .+++-+...|++++.--+.|++.|--
T Consensus 73 D~~~~~~~~~~~~~~~fI~~~~~~~~~VLVHC~aG~sRS~~vv~ayLm~~~~~s~~~A~~~v~~~Rp~ 140 (188)
T 2esb_A 73 DSPNSRLCDFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCRPI 140 (188)
T ss_dssp SCTTSCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHCTT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHCCc
Confidence 43333333344556666555322 3444 9999975 44555556899998877888887754
No 16
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=61.82 E-value=32 Score=22.84 Aligned_cols=46 Identities=11% Similarity=0.054 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 80 ESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 80 EtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
+..+++..+..-.+..++.+.+..+++.+ .| ||..+..++..+-..
T Consensus 189 e~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G-~~~~~~~~~~~~~~~ 234 (250)
T 1njg_A 189 QIRHQLEHILNEEHIAHEPRALQLLARAA-EG-SLRDALSLTDQAIAS 234 (250)
T ss_dssp HHHHHHHHHHHHTTCCBCHHHHHHHHHHH-TT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CC-CHHHHHHHHHHHHhc
Confidence 44455555544446678999999999998 45 999999888877543
No 17
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Probab=61.28 E-value=5.9 Score=26.68 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=27.4
Q ss_pred HhcC--CCCHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Q 040572 91 ILDT--GLDRHTLSVLIALCDL-GVNPEALAAVVKELQR 126 (142)
Q Consensus 91 LLNT--GLDReTLsICI~LcE~-GVNPEALA~VIKELRr 126 (142)
|+.| |.+|...-+++-|+.. |++++.....|++.|.
T Consensus 93 lVHC~aG~~Rtg~~~~~~l~~~~~~~~~~a~~~~r~~R~ 131 (161)
T 2i6j_A 93 LVHCVGGIGRTGTILASYLILTEGLEVESAIDEVRLVRP 131 (161)
T ss_dssp EEECSSSSHHHHHHHHHHHHHHHCCCHHHHHHHHHHHST
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 6666 9999988877777766 9998876666666554
No 18
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}
Probab=60.58 E-value=10 Score=27.47 Aligned_cols=49 Identities=14% Similarity=0.054 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHH-----HhcC--CCCHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 79 RESLDLAFHMSN-----ILDT--GLDRHTL-SVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 79 rEtLDiL~EIS~-----LLNT--GLDReTL-sICI~LcE~GVNPEALA~VIKELRrE 127 (142)
.++++.+.+.-+ |+.| |++|... .+++-|...|++.+.--..|++.|-.
T Consensus 90 ~~~~~fi~~~~~~~~~VlVHC~aG~~RSgtvv~ayLm~~~~~s~~~A~~~v~~~R~~ 146 (190)
T 2wgp_A 90 DTVADKIHSVSRKHGATLVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARRPV 146 (190)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 445555555422 4455 9999874 45555566899988777777777654
No 19
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=60.20 E-value=6.2 Score=26.77 Aligned_cols=52 Identities=10% Similarity=0.101 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHH-----HHHhcC--CCCHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 76 RTARESLDLAFHM-----SNILDT--GLDRHTL-SVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 76 ~aArEtLDiL~EI-----S~LLNT--GLDReTL-sICI~LcE~GVNPEALA~VIKELRrE 127 (142)
..-.++++.+.+. .-|+.| |++|... .+++-+...|++++.--+.|++.|-.
T Consensus 65 ~~~~~~~~fi~~~~~~~~~VlVHC~~G~sRS~~~v~ayLm~~~~~~~~~A~~~v~~~Rp~ 124 (144)
T 3s4e_A 65 SYFPECFEFIEEAKRKDGVVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNARPS 124 (144)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 3445556655543 124455 9999754 45555556999998877888887753
No 20
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=59.76 E-value=13 Score=24.79 Aligned_cols=44 Identities=5% Similarity=0.182 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 040572 79 RESLDLAFHMSNILDTGLDR-HTLSVLIALCDLGVNPEALAAVVKELQR 126 (142)
Q Consensus 79 rEtLDiL~EIS~LLNTGLDR-eTLsICI~LcE~GVNPEALA~VIKELRr 126 (142)
.+.......+|.+|+.|++= ++|.++.+..++ ..+..++.++++
T Consensus 12 ~~~~~f~~~La~ll~sGv~l~~aL~~~~~~~~~----~~l~~~l~~i~~ 56 (123)
T 3c1q_A 12 PDLALITRQLATLVQSGMPLEECLRAVAEQSEK----PRIRTMLVAVRA 56 (123)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCSC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCC----HHHHHHHHHHHH
Confidence 35667888999999999984 455554443333 344444444443
No 21
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Probab=58.94 E-value=6.8 Score=28.04 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=25.8
Q ss_pred HhcC--CCCHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040572 91 ILDT--GLDRHTLSVLIALCDLGVNPEALAAVVKEL 124 (142)
Q Consensus 91 LLNT--GLDReTLsICI~LcE~GVNPEALA~VIKEL 124 (142)
++.| |.+|...-++.-|+..|++++...+.|++.
T Consensus 121 lVHC~aG~gRSg~~va~~L~~~g~~~~~a~~~vr~~ 156 (189)
T 3rz2_A 121 AVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQK 156 (189)
T ss_dssp EEECSSSSTTHHHHHHHHHHTTTCCHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4555 999999999999999999987544444433
No 22
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=58.24 E-value=35 Score=22.09 Aligned_cols=46 Identities=11% Similarity=0.274 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 79 RESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 79 rEtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
.+.......+|.+|+.|++- .-+++++...++-..+..++.+++++
T Consensus 13 ~~~~~f~~~La~ll~sGi~l---~~aL~~~~~~~~~~~~~~~~~~i~~~ 58 (116)
T 2whn_A 13 KDLAIFSRQLATMLGAGLTL---LQALAILERQTENRKFREILKQVRTD 58 (116)
T ss_dssp HHHHHHHHHHHHHHHHTCCH---HHHHHHHTTSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35567788999999999984 33555566665445555555555544
No 23
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus}
Probab=58.08 E-value=10 Score=26.35 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhCC
Q 040572 95 GLDRHTLSVLIALCD-LGVNPEALAAVVKELQREP 128 (142)
Q Consensus 95 GLDReTLsICI~LcE-~GVNPEALA~VIKELRrE~ 128 (142)
|++|...-+|.-|+. .|++++.--+.|++.|.-.
T Consensus 123 G~~RTg~~va~~L~~~~~~~~~~a~~~~r~~R~~~ 157 (169)
T 1yn9_A 123 GINRTGYMVCRYLMHTLGIAPQEAIDRFEKARGHK 157 (169)
T ss_dssp SSHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSC
T ss_pred CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHCCCC
Confidence 999999999999998 9999988777777777543
No 24
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=57.61 E-value=32 Score=22.85 Aligned_cols=59 Identities=20% Similarity=0.356 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHh---------cCCCCHHHHHHHHHHHhC------------CCCHHHHHHHHHHHHhC
Q 040572 69 DMDPEAARTARESLDLAFHMSNIL---------DTGLDRHTLSVLIALCDL------------GVNPEALAAVVKELQRE 127 (142)
Q Consensus 69 ~md~d~~~aArEtLDiL~EIS~LL---------NTGLDReTLsICI~LcE~------------GVNPEALA~VIKELRrE 127 (142)
.|+.+...-.......++.++..+ ..||+...+.++..|.+. |+++.++..+|+.|-+.
T Consensus 3 ~M~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~ 82 (149)
T 4hbl_A 3 AMKQEQMRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQS 82 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 344444444444444444443332 469999999999999764 34566666666666543
No 25
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=56.73 E-value=37 Score=26.66 Aligned_cols=56 Identities=5% Similarity=0.045 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHH-HH-----HhcC--CCCHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 72 PEAARTARESLDLAFHM-SN-----ILDT--GLDRHTL-SVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 72 ~d~~~aArEtLDiL~EI-S~-----LLNT--GLDReTL-sICI~LcE~GVNPEALA~VIKELRrE 127 (142)
++....-.++++.|.+. .+ |+.| |++|... .+++-|...|++++.--..|+..|.-
T Consensus 85 ~~l~~~~~~~~~~I~~~l~~~g~~VLVHC~aG~sRS~tvv~ayLm~~~g~s~~~A~~~v~~~Rp~ 149 (294)
T 3nme_A 85 FDLRMRLPAVVGTLYKAVKRNGGVTYVHSTAGMGRAPAVALTYMFWVQGYKLMEAHKLLMSKRSC 149 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSEEEEECSSSSSHHHHHHHHHHHHTSCCCHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEECCCCCchhHHHHHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 34445566777777754 21 6677 9999655 44555555699998877778877754
No 26
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}
Probab=56.39 E-value=24 Score=24.90 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHH-----HhcC--CCCHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhC
Q 040572 77 TARESLDLAFHMSN-----ILDT--GLDRHTLSVLIALC-DLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 77 aArEtLDiL~EIS~-----LLNT--GLDReTLsICI~Lc-E~GVNPEALA~VIKELRrE 127 (142)
.-.++++.+.+.-+ |+.| |.+|...-++.-|+ ..|++++.--..|+..|-.
T Consensus 72 ~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~v~ayLm~~~~~~~~~A~~~v~~~Rp~ 130 (177)
T 2oud_A 72 YFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPI 130 (177)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 33455555555422 3444 99998876555555 5899988766777776643
No 27
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}
Probab=56.16 E-value=15 Score=24.19 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Q 040572 95 GLDRHTLSVLIALCDL-GVNPEALAAVVKELQR 126 (142)
Q Consensus 95 GLDReTLsICI~LcE~-GVNPEALA~VIKELRr 126 (142)
|.+|...-++.-|+.. |++++...+.|+..|.
T Consensus 99 G~~Rsg~~~~~~l~~~~~~~~~~a~~~~r~~R~ 131 (151)
T 2img_A 99 GFGRTGTMLACYLVKERGLAAGDAIAEIRRLRP 131 (151)
T ss_dssp SSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHST
T ss_pred CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHCC
Confidence 9999998888888877 9998877777766654
No 28
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=56.15 E-value=23 Score=25.93 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
++++|+|+|| .=++|-|...||.|+.+ ..+|.+.
T Consensus 59 el~~E~ADLl--------YHllVlL~~~gv~l~dV---~~eL~~R 92 (116)
T 2a7w_A 59 HLVREVADLW--------FHTMVLLTYHGLRPEDV---VMELHRR 92 (116)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHTTCCHHHH---HHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHcCCCHHHH---HHHHHHH
Confidence 4688888887 45788899999998764 4555443
No 29
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}
Probab=56.05 E-value=15 Score=25.53 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHH-----HhcC--CCCHHHHH-HHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 79 RESLDLAFHMSN-----ILDT--GLDRHTLS-VLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 79 rEtLDiL~EIS~-----LLNT--GLDReTLs-ICI~LcE~GVNPEALA~VIKELRrE 127 (142)
.++++.+.+.-. |+.| |.+|...- +++-|...|++++.--..|++.|..
T Consensus 70 ~~~~~fi~~~~~~~~~VlVHC~aG~~RSg~~~~ayLm~~~~~~~~~A~~~v~~~R~~ 126 (165)
T 1wrm_A 70 KESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGRSC 126 (165)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHTSSCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 445555555421 3444 99999875 5555556799988776777777653
No 30
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=54.65 E-value=7.8 Score=29.86 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQR 126 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRr 126 (142)
++..++..++-.|.|-.+-.++..|....-||+.++.+-.||..
T Consensus 275 ei~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~ 318 (487)
T 3n9y_A 275 DIKANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVLA 318 (487)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 45666777888888888888888888888899999998888874
No 31
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=54.05 E-value=8.2 Score=29.50 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
++..++..++-.|.|-.+-.++..|....-||+.++.+-.||+.-..
T Consensus 283 ei~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~ 329 (482)
T 3k9v_A 283 ELYAAVTELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQSVLP 329 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 45666777777888888888888888888999999999999987544
No 32
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=54.02 E-value=13 Score=26.54 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVV 121 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VI 121 (142)
++++|+|+|| .=++|-|...||.|+.+....
T Consensus 60 ~l~~E~ADLl--------YHllVlL~~~gv~l~dV~~eL 90 (98)
T 1yxb_A 60 AAAEEISQLL--------YHVQVMMVARGISLDDVYAHL 90 (98)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHTTCCHHHHHHHC
T ss_pred HHHHHHHHHH--------HHHHHHHHHcCCCHHHHHHHH
Confidence 3688888887 457888999999988655443
No 33
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=53.99 E-value=26 Score=25.58 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKE 123 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKE 123 (142)
++++|+|+|| .=++|-|...||.|+.+...+..
T Consensus 58 ~l~~E~ADLl--------YHllVlL~~~gv~l~dV~~eL~~ 90 (115)
T 1yvw_A 58 EVVKEMVDVF--------YHCFVLLAEKNIALEDVMREVKE 90 (115)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHcCCCHHHHHHHHHH
Confidence 3688888887 45788899999998875554443
No 34
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=53.65 E-value=8.3 Score=29.70 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+..||..-.
T Consensus 272 ei~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~~~kl~~Ei~~~~ 317 (485)
T 3nxu_A 272 ELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVL 317 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHh
Confidence 5667777788888888888888888888999999999988887644
No 35
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*
Probab=52.66 E-value=9.6 Score=26.65 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHH------HHhcC--CCCHHHHHH-HHHHHhCCCCHHHHHHHHHHHHh
Q 040572 78 ARESLDLAFHMS------NILDT--GLDRHTLSV-LIALCDLGVNPEALAAVVKELQR 126 (142)
Q Consensus 78 ArEtLDiL~EIS------~LLNT--GLDReTLsI-CI~LcE~GVNPEALA~VIKELRr 126 (142)
-.++++.+.+.- -|+.| |.+|...-+ ++-+...|++++.--+.|+..|.
T Consensus 100 ~~~~~~~i~~~~~~~~~~VlVHC~~G~~RSg~~v~ayLm~~~~~~~~~A~~~v~~~R~ 157 (183)
T 3f81_A 100 FERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNRE 157 (183)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 345555555442 23455 999998844 44445789999887777887763
No 36
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=52.24 E-value=47 Score=21.81 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 040572 73 EAARTARESLDLAFHMSNILDT-GLDRHTLSVLIALCDLGVNPEALAAVVKELQR 126 (142)
Q Consensus 73 d~~~aArEtLDiL~EIS~LLNT-GLDReTLsICI~LcE~GVNPEALA~VIKELRr 126 (142)
.-.+.+.+.+.....+...+.. |++.+.+.....+++.-++++.+..+...|..
T Consensus 73 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~L~~~l~~ 127 (139)
T 2x4h_A 73 NGTRSINYLIKAHRVIEILLVNIGIDKQTACEYSKQFDYLIPEEIIDKLYNYLGK 127 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHGGGSCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhCC
Confidence 3334445555555556666665 99999999999999999999998887776643
No 37
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=51.84 E-value=28 Score=27.60 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=32.2
Q ss_pred HHHHHhc-CCCCHHHH-HHHHHHHhCCCCHHHHHHHHHHHHh
Q 040572 87 HMSNILD-TGLDRHTL-SVLIALCDLGVNPEALAAVVKELQR 126 (142)
Q Consensus 87 EIS~LLN-TGLDReTL-sICI~LcE~GVNPEALA~VIKELRr 126 (142)
.|.+++. ..+|.+.+ .+...|+++||+++....++.++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~ 74 (306)
T 1vma_A 33 RVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEE 74 (306)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 3556663 26898887 4888999999999999999998876
No 38
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=50.05 E-value=30 Score=23.22 Aligned_cols=37 Identities=8% Similarity=-0.090 Sum_probs=29.4
Q ss_pred HhcC--CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 91 ILDT--GLDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 91 LLNT--GLDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
|+.| |.||...-+++-|+..|++++...+-++..|..
T Consensus 96 lvHC~aG~~RTg~~~a~~l~~~g~~~~~a~~~~~~~~~~ 134 (151)
T 1xri_A 96 LIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFAAA 134 (151)
T ss_dssp EEECSSSSSHHHHHHHHHHHHTTBCHHHHHHHHHHHHGG
T ss_pred EEECCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 4556 999999998888999999998876666666543
No 39
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=48.72 E-value=67 Score=22.57 Aligned_cols=45 Identities=9% Similarity=0.123 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHh---CCCCHHHHHH
Q 040572 75 ARTARESLDLAFHMSNILD-------TGLDRHTLSVLIALCD---LGVNPEALAA 119 (142)
Q Consensus 75 ~~aArEtLDiL~EIS~LLN-------TGLDReTLsICI~LcE---~GVNPEALA~ 119 (142)
.....+.+..++.++..+. .||+...+.++..|.+ .|+++..||.
T Consensus 11 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~lt~~q~~vL~~L~~~~~~~~t~~eLa~ 65 (189)
T 3nqo_A 11 LFLMNQTYATLFTLTNKIQIEGDKYFGILTSRQYMTILSILHLPEEETTLNNIAR 65 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCcCHHHHHH
Confidence 3344455555555554443 2799999999999995 3566655554
No 40
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=48.19 E-value=8.6 Score=29.43 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+-.||..-..
T Consensus 267 ~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~Ei~~~~~ 313 (476)
T 3e6i_A 267 GITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIG 313 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcC
Confidence 45566677778888888888888888888899999999888876543
No 41
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*
Probab=48.00 E-value=23 Score=25.61 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Q 040572 95 GLDRHTLSVLIALCDL--GVNPEALAAVVKELQ 125 (142)
Q Consensus 95 GLDReTLsICI~LcE~--GVNPEALA~VIKELR 125 (142)
|++|...-++.-|+.. |++++...+.|+..|
T Consensus 143 G~gRTg~~~a~~L~~~~~g~~~~~a~~~vr~~R 175 (212)
T 1fpz_A 143 GLGRSCLVAACLLLYLSDTISPEQAIDSLRDLR 175 (212)
T ss_dssp SSSHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHhC
Confidence 9999988888888874 999998888888877
No 42
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=45.62 E-value=44 Score=19.55 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=28.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040572 67 VDDMDPEAARTARESLDLAFHMSNILDTG-LDRHTLSVLIALCDLGVNPEALAAVVKEL 124 (142)
Q Consensus 67 ~~~md~d~~~aArEtLDiL~EIS~LLNTG-LDReTLsICI~LcE~GVNPEALA~VIKEL 124 (142)
...+..+.....+++|..+ +.=+.| |+.+-|..++.-+..+++.+.+..+++++
T Consensus 5 ~~~l~~~~~~~l~~~F~~~----D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLF----DKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDY 59 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHT----CTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHH----CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 4455666666656555443 112233 56666665555544445555555555554
No 43
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=45.40 E-value=20 Score=23.70 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHH-----HHhcC--CCCHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhC
Q 040572 78 ARESLDLAFHMS-----NILDT--GLDRHTLSVLIALCD-LGVNPEALAAVVKELQRE 127 (142)
Q Consensus 78 ArEtLDiL~EIS-----~LLNT--GLDReTLsICI~LcE-~GVNPEALA~VIKELRrE 127 (142)
..+.++.+.+.- -|+.| |.||...-++.-|+. .|++.+...+.|+..|..
T Consensus 74 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~~~~~~~a~~~vr~~R~~ 131 (150)
T 4erc_A 74 IDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPG 131 (150)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSSSHHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 344555554432 24455 999998655555554 899988877777776643
No 44
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=44.19 E-value=29 Score=23.30 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHH-----HhcC--CCCHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 79 RESLDLAFHMSN-----ILDT--GLDRHT-LSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 79 rEtLDiL~EIS~-----LLNT--GLDReT-LsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
.++++.+.+.-+ |+.| |++|.. +.+++-|...|++++.--+.|++.|..
T Consensus 68 ~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~v~ayLm~~~~~~~~~A~~~v~~~R~~ 124 (145)
T 2nt2_A 68 NDTYKFISKAKKHGSKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTV 124 (145)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCC
Confidence 345555554422 3444 999995 555666666899988777888887754
No 45
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=43.16 E-value=11 Score=28.66 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
++..++..++-.|.|-.+-.++..|....-||+....+-.||..-.
T Consensus 272 ~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~~~ 317 (479)
T 3tbg_A 272 NLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVI 317 (479)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 4556677777888888888888888888899999999988887544
No 46
>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO, tungstoenzyme, tungsten containing protein, hypertherm oxidoreductase; HET: PTT; 1.85A {Pyrococcus furiosus} SCOP: a.110.1.1 d.152.1.1 PDB: 1b4n_A*
Probab=43.07 E-value=42 Score=29.84 Aligned_cols=45 Identities=13% Similarity=0.300 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcC-CCCH----HHHHHHHHHHhCCC--------CHHHHHHHHHHHHh
Q 040572 82 LDLAFHMSNILDT-GLDR----HTLSVLIALCDLGV--------NPEALAAVVKELQR 126 (142)
Q Consensus 82 LDiL~EIS~LLNT-GLDR----eTLsICI~LcE~GV--------NPEALA~VIKELRr 126 (142)
+|.+..+..|.|- |||- .+++..++|.|.|+ |++++..+|.+|=+
T Consensus 322 l~~i~~~~~l~d~~GlDtIs~G~~ia~amE~~e~Gll~eel~~Gd~~~~~~ll~~Ia~ 379 (619)
T 1b25_A 322 LNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGAKQLALDIAY 379 (619)
T ss_dssp HHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSSSSCCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHCCCCcccCCCCCHHHHHHHHHHHHh
Confidence 3555566666665 9994 67899999999998 89999999988743
No 47
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=42.80 E-value=12 Score=29.13 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+..||..-.
T Consensus 269 ~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~ 314 (477)
T 1r9o_A 269 SLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVI 314 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 4667777788888888888888888888889999999999987644
No 48
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=42.76 E-value=9.8 Score=29.38 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+-.||..-.
T Consensus 279 ~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~ 324 (507)
T 3pm0_A 279 NVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVV 324 (507)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 3566677778888888888888888888889999999999988644
No 49
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=42.19 E-value=36 Score=24.28 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 040572 82 LDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 82 LDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a 130 (142)
+++|.-+..=-+.+++++.|.--+--.+.+++...+-..|+.||+....
T Consensus 182 ~~iL~~l~~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 182 FTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp HHHHHHHHHTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 5677766666678899999887776667789999999999999987654
No 50
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=41.67 E-value=12 Score=29.06 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
+++.++..++-.|.|-.+-.++..|....-||+.+..+..||..-..
T Consensus 268 ~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~Ei~~~~~ 314 (476)
T 1po5_A 268 NLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIG 314 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 56777888888899988888888888888899999999999886543
No 51
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}
Probab=41.32 E-value=34 Score=23.03 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHH-hCCCCHHHHHHHHHHHHh
Q 040572 94 TGLDRHTLSVLIALC-DLGVNPEALAAVVKELQR 126 (142)
Q Consensus 94 TGLDReTLsICI~Lc-E~GVNPEALA~VIKELRr 126 (142)
.|.||...-++.-|+ ..|++++.--..|++.|-
T Consensus 99 aG~~RS~~~~~ayl~~~~~~~~~~a~~~v~~~R~ 132 (154)
T 2r0b_A 99 AGISRSAAFVIAYIMETFGMKYRDAFAYVQERRF 132 (154)
T ss_dssp SSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHST
T ss_pred CCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHCC
Confidence 399999865544455 489998887777887775
No 52
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=41.16 E-value=44 Score=26.12 Aligned_cols=33 Identities=9% Similarity=0.162 Sum_probs=25.9
Q ss_pred CCCHHH----H-HHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 95 GLDRHT----L-SVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 95 GLDReT----L-sICI~LcE~GVNPEALA~VIKELRrE 127 (142)
.||.+. | .+...|++++|+++....++.+++++
T Consensus 19 ~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~ 56 (297)
T 1j8m_F 19 SSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKER 56 (297)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 477633 3 47788999999999999999888764
No 53
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=41.16 E-value=22 Score=27.20 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQ 125 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELR 125 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+..|+.
T Consensus 210 ~l~~~~~~~~~aG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E~~ 252 (389)
T 1n97_A 210 RALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAESEE 252 (389)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 3556667777888888888888888888899998776555543
No 54
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=40.77 E-value=74 Score=21.40 Aligned_cols=49 Identities=22% Similarity=0.055 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040572 77 TARESLDLAFHMSNILD-TGLDRHTLSVLIALCDLGVNPEALAAVVKELQ 125 (142)
Q Consensus 77 aArEtLDiL~EIS~LLN-TGLDReTLsICI~LcE~GVNPEALA~VIKELR 125 (142)
..++.......+-+++- .||+.+....+...++..++++.++.+..-|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~le~~~s~e~~~~L~~~l~ 150 (155)
T 2h09_A 101 LAQESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQ 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHGGGCCHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34444444555545443 49999999999999999999998887655443
No 55
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=40.70 E-value=28 Score=23.36 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 040572 73 EAARTARESLDLAFHMSNILDTGLDRHT 100 (142)
Q Consensus 73 d~~~aArEtLDiL~EIS~LLNTGLDReT 100 (142)
+..+...+-+.+|++||+.++..+|.+.
T Consensus 20 ~~l~~~~~~~~~L~~is~~l~~~~dl~~ 47 (184)
T 3p01_A 20 EELRRANAQMSLLTVLVQVTQASNSLEA 47 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3455667778999999999999998664
No 56
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=40.36 E-value=55 Score=22.17 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCC---HHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 040572 84 LAFHMSNILDTGLD---RHTLSVLIALCDLGVNPEALAAVVKELQR 126 (142)
Q Consensus 84 iL~EIS~LLNTGLD---ReTLsICI~LcE~GVNPEALA~VIKELRr 126 (142)
.+..|+.|++.+-| +..|.-|++|.+..| +.|...+.+|..
T Consensus 52 ~~~~~~~l~~~~~~~~~~~al~dC~e~y~~a~--~~L~~a~~~l~~ 95 (153)
T 1x91_A 52 TLKKLQSIIDGGVDPRSKLAYRSCVDEYESAI--GNLEEAFEHLAS 95 (153)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 34445555554445 557999999999887 678888888864
No 57
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=40.11 E-value=54 Score=19.91 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHhC------------CCCHHHHHHHHHHHHhC
Q 040572 94 TGLDRHTLSVLIALCDL------------GVNPEALAAVVKELQRE 127 (142)
Q Consensus 94 TGLDReTLsICI~LcE~------------GVNPEALA~VIKELRrE 127 (142)
.||+...+.|+..|.+. |+++.++...|+.|.+.
T Consensus 16 ~~l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 16 LSFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp TCCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 47777777777777652 44555556666666554
No 58
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=39.87 E-value=13 Score=28.05 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLG--VNPEALAAVVKELQRE 127 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~G--VNPEALA~VIKELRrE 127 (142)
+++.++..++-.|.|-.+-.++..|.... -||+.++.+..||..-
T Consensus 253 ~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~~~p~~~~~l~~Ei~~~ 299 (450)
T 3gw9_A 253 EVCGMIVAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF 299 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHcCCcchhHHHHHHHHHHhc
Confidence 35556666777777777777777777777 8999988888888653
No 59
>3d7i_A Carboxymuconolactone decarboxylase family protein; 1591455, structural genomics, JOI for structural genomics, JCSG; HET: MSE PG4; 1.75A {Methanocaldococcus jannaschii}
Probab=39.87 E-value=76 Score=20.64 Aligned_cols=45 Identities=22% Similarity=0.447 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHh--cCCCCHHHHHHH-------------H-----HHH-hCCCCHHHHHHHHHH
Q 040572 79 RESLDLAFHMSNIL--DTGLDRHTLSVL-------------I-----ALC-DLGVNPEALAAVVKE 123 (142)
Q Consensus 79 rEtLDiL~EIS~LL--NTGLDReTLsIC-------------I-----~Lc-E~GVNPEALA~VIKE 123 (142)
-+.++.+.++..-+ +.+||+.+..+. + ... ++|+.++.|.+++..
T Consensus 20 P~~~~~~~~l~~~~~~~~~L~~k~reLi~lavs~~~gc~~cl~~H~~~A~~~~G~t~eei~e~~~~ 85 (105)
T 3d7i_A 20 PDLYDIIVKLNDTVFTGKTLDYKTQKLIAIGIVASRCDEVAIEKQMKSAMKELGITKEEIADVLRV 85 (105)
T ss_dssp HHHHHHHHHHHHHHTSCSSSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34555555555444 468999876542 2 234 788888888877754
No 60
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=39.41 E-value=61 Score=22.31 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=28.8
Q ss_pred hhcccccccccCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhCCCCHHHHHHHH
Q 040572 57 QLQQPRESRLVDDMDPEAARTARESLDLAFHMSNILDT-GLDRHTLSVLIALCDLGVNPEALAAVV 121 (142)
Q Consensus 57 ~~~~~~~~~~~~~md~d~~~aArEtLDiL~EIS~LLNT-GLDReTLsICI~LcE~GVNPEALA~VI 121 (142)
+..+...+.....+..+.+..-++.|..+ +.=+. -|+.+-|..++.-+...++.+.+..++
T Consensus 38 ~r~~~~~~~~~~~ls~~~~~~l~~~F~~~----D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~ 99 (196)
T 3dtp_E 38 RRAQRSGSNVFAMFTQHQVQEFKEAFQLI----DQDKDGFISKNDIRATFDSLGRLCTEQELDSMV 99 (196)
T ss_dssp GGCCCCCCCSSCSSCTTTHHHHHHHHHHH----CCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred ccccccchhhhhhCCHHHHHHHHHHHHHH----CCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 33344445555566666666655555443 11112 255665555554443333444444333
No 61
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=38.72 E-value=15 Score=28.41 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
++..++..++-.|.|-.+-.++..|....-||+.+..+-.||..-
T Consensus 279 ~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~ 323 (496)
T 3qz1_A 279 HVHMSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRE 323 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 455667778888888888888888888888999999998888754
No 62
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=38.32 E-value=42 Score=21.25 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCC
Q 040572 81 SLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPSPS 131 (142)
Q Consensus 81 tLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a~ 131 (142)
-+++|.-+..=-+--++++.|.-.|-=-+..++..+|...|..||+.....
T Consensus 27 E~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~ 77 (96)
T 3rjp_A 27 EYDLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIP 77 (96)
T ss_dssp HHHHHHHHHHTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHhCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhccc
Confidence 356666665544556999988665532244578999999999999987653
No 63
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=38.03 E-value=15 Score=28.80 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+..||..-.
T Consensus 273 ei~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~ 318 (481)
T 3czh_A 273 NLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIM 318 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhChHHHHHHHHHHHHhc
Confidence 4666777788888888888888888888889999999999887543
No 64
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=37.84 E-value=36 Score=21.89 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHH-HHHHHHH
Q 040572 80 ESLDLAFHMSNILDTGLDRHTL-SVLIALC 108 (142)
Q Consensus 80 EtLDiL~EIS~LLNTGLDReTL-sICI~Lc 108 (142)
..+.+|++|++.|+..+|.+.+ ..++..+
T Consensus 3 ~~l~ll~~i~~~l~~~~d~~~~l~~i~~~~ 32 (177)
T 3k2n_A 3 AALKLMQYIGDAIGTIRDPQELFRTVTDKL 32 (177)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 4688999999999999998754 3444443
No 65
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=37.78 E-value=15 Score=28.51 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
+++.++..++-.|.|-.+-.++..|....-||+.+..+..||..-..
T Consensus 268 ~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~~l~~Ei~~~~~ 314 (476)
T 2fdv_A 268 NLVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIG 314 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhhc
Confidence 46667777788888888888888888888899999999999876543
No 66
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=37.55 E-value=45 Score=21.85 Aligned_cols=64 Identities=23% Similarity=0.240 Sum_probs=48.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhc-CCC---C----HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 040572 67 VDDMDPEAARTARESLDLAFHMSNILD-TGL---D----RHTLSVLIALCDLGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 67 ~~~md~d~~~aArEtLDiL~EIS~LLN-TGL---D----ReTLsICI~LcE~GVNPEALA~VIKELRrE~~a 130 (142)
+|..|.+-+.--.+-++++.+|+.+=. .|+ | .+-|.-+.++.+.|++|+.+..+.++|-.++..
T Consensus 12 ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~~~~i~dp~RE~~vl~~~~~~~~~~l~~~~i~~if~~ii~~s~~ 83 (90)
T 2d8d_A 12 VDRVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEEMLAYLTAENPGPFPDETIRKLFKEIFKASLD 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 566777777888888888888888763 354 3 345666677778899999999999999876654
No 67
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=36.98 E-value=36 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=20.7
Q ss_pred cCCCCHHHHHHHHHHHhC---CCCHHHHHH
Q 040572 93 DTGLDRHTLSVLIALCDL---GVNPEALAA 119 (142)
Q Consensus 93 NTGLDReTLsICI~LcE~---GVNPEALA~ 119 (142)
..||+...+.++..|.+. |+.+..||.
T Consensus 41 ~~glt~~q~~vL~~l~~~~~~~~t~~eLa~ 70 (168)
T 3u2r_A 41 QFELSAQQYNTLRLLRSVHPEGMATLQIAD 70 (168)
T ss_dssp TTTCCHHHHHHHHHHHHHTTSCEEHHHHHH
T ss_pred hcCCCHHHHHHHHHHHhcCCCCcCHHHHHH
Confidence 459999999999999884 565555554
No 68
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=36.86 E-value=16 Score=28.31 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+..|+..-.
T Consensus 243 ~i~~~~~~~~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~Ei~~~~ 288 (444)
T 2ve3_A 243 ELKDQILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKLQ 288 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 4556667777778888888888888888889999999988887653
No 69
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=36.22 E-value=89 Score=20.93 Aligned_cols=42 Identities=7% Similarity=0.074 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCC---HHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 040572 83 DLAFHMSNILDTGLD---RHTLSVLIALCDLGVNPEALAAVVKELQR 126 (142)
Q Consensus 83 DiL~EIS~LLNTGLD---ReTLsICI~LcE~GVNPEALA~VIKELRr 126 (142)
.....|+.|++.+-| +..|.-|++|.+..| ..|...+.+|..
T Consensus 51 ~~~~~~~~l~~~~~~~~~~~al~dC~e~y~~a~--~~L~~a~~~l~~ 95 (153)
T 1xg2_B 51 QTSKIIASLTNQATDPKLKGRYETCSENYADAI--DSLGQAKQFLTS 95 (153)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 344455566665445 457999999999987 678888888865
No 70
>1vke_A Carboxymuconolactone decarboxylase family protein; TM1620, structural genomics, JC protein structure initiative, PSI; 1.56A {Thermotoga maritima} SCOP: a.152.1.2
Probab=35.98 E-value=1.1e+02 Score=21.54 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=20.5
Q ss_pred cCCCCHHHHHHH-------------H-----HHHhCCCCHHHHHHHHHH
Q 040572 93 DTGLDRHTLSVL-------------I-----ALCDLGVNPEALAAVVKE 123 (142)
Q Consensus 93 NTGLDReTLsIC-------------I-----~LcE~GVNPEALA~VIKE 123 (142)
..|||+.+..++ + ...++|+.++.|.++|..
T Consensus 50 ~~~Ld~k~rELI~Lavs~~ngC~yCl~~H~~~A~~~G~t~eeI~eal~~ 98 (133)
T 1vke_A 50 PGKLDVKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDI 98 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467888776542 2 246778888888777753
No 71
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=35.96 E-value=25 Score=23.79 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHhCCC
Q 040572 111 GVNPEALAAVVKELQREPS 129 (142)
Q Consensus 111 GVNPEALA~VIKELRrE~~ 129 (142)
|++++.|..++++|+++.-
T Consensus 175 g~sr~tvsR~l~~l~~~g~ 193 (207)
T 2oz6_A 175 GCSREMVGRVLKSLEEQGL 193 (207)
T ss_dssp TSCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8899999999999999864
No 72
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=35.69 E-value=17 Score=28.17 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
+++..+..++-.|.|-.+-.++..|.+..-||+.+..+-.||..-..
T Consensus 273 ~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~ 319 (494)
T 3swz_A 273 HILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVG 319 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence 45666777788888888888888888888899999999999886543
No 73
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=35.56 E-value=23 Score=25.65 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 97 DRHTLSVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 97 DReTLsICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
++..-.+--.|.+.|++++.+..||..|....
T Consensus 31 ~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g 62 (162)
T 3dfg_A 31 EHSKKELNRKLQARGIEPEAAQAAVERLAGEG 62 (162)
T ss_dssp CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 44455666778888888888888888887654
No 74
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=35.31 E-value=18 Score=27.98 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
++...+..++-.|.|-.+-.++..|.+..-||+.++.+-.||..-..
T Consensus 295 ~i~~~~~~~~~AG~~Tta~~l~~~l~~L~~~P~~~~kl~~Ei~~v~~ 341 (503)
T 3s79_A 295 NVNQCILEMLIAAPDTMSVSLFFMLFLIAKHPNVEEAIIKEIQTVIG 341 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 34555666677777777777777777777899999999888876443
No 75
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=35.16 E-value=18 Score=27.79 Aligned_cols=47 Identities=11% Similarity=-0.044 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
++...+..++-.|.|-.+-.++..|....-||+.++.+-.||..-..
T Consensus 252 ~i~~~~~~l~~ag~~Tt~~~l~~~l~~L~~~P~~~~~l~~Ei~~~~~ 298 (461)
T 3i3k_A 252 EVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCG 298 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 45556666777777777777777777777899999988888876443
No 76
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=34.86 E-value=74 Score=27.91 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=31.9
Q ss_pred HHHHhc-CCCCHHHHH-HHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 88 MSNILD-TGLDRHTLS-VLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 88 IS~LLN-TGLDReTLs-ICI~LcE~GVNPEALA~VIKELRrE 127 (142)
|..|+. ..||.+.|. +...|++++|+.+....+|..|+..
T Consensus 214 l~~~~~~~~ide~~l~el~~~Ll~aDv~~~~~~~l~~~l~~~ 255 (503)
T 2yhs_A 214 FISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEG 255 (503)
T ss_dssp HHHHHTTCBCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 445553 358888884 8889999999999999999988764
No 77
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=34.79 E-value=33 Score=25.85 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHH-----Hhc--CCCCHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 78 ARESLDLAFHMSN-----ILD--TGLDRHTL-SVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 78 ArEtLDiL~EIS~-----LLN--TGLDReTL-sICI~LcE~GVNPEALA~VIKELRrE 127 (142)
-.++++.+.+.-+ |+. .|++|... .+++-|...|++.+.--+.|++.|..
T Consensus 69 ~~~~~~fI~~~~~~~~~VLVHC~aG~sRSgtvv~AYLm~~~g~s~~eAl~~vr~~Rp~ 126 (211)
T 2g6z_A 69 FQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSM 126 (211)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 3455555554422 334 49999975 45555556899988777777777653
No 78
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=34.57 E-value=15 Score=28.83 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+..||..-.
T Consensus 282 ~i~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~v~ 327 (495)
T 2hi4_A 282 KIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKELDTVI 327 (495)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhc
Confidence 4566666777778877777777777777889999999999988644
No 79
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=34.42 E-value=19 Score=27.89 Aligned_cols=46 Identities=11% Similarity=-0.048 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
+++.++..++-.|.|-.+-.++..|.....||+....+-.||..-.
T Consensus 252 ei~~~~~~~~~aG~dTt~~~l~~~l~~L~~~P~~q~kl~~Ei~~v~ 297 (461)
T 3ld6_A 252 EVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVC 297 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccccccccchhhhcccccChHHHHHHHHHHHHHh
Confidence 3556666777788888888888888888899999988888877643
No 80
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=33.88 E-value=1.2e+02 Score=24.84 Aligned_cols=58 Identities=22% Similarity=0.442 Sum_probs=42.3
Q ss_pred cccc--CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCC
Q 040572 64 SRLV--DDMDPEAARTARESLDLAFHMSNILDTGLDRHTLSVLIALCD--LGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 64 ~~~~--~~md~d~~~aArEtLDiL~EIS~LLNTGLDReTLsICI~LcE--~GVNPEALA~VIKELRrE~~a 130 (142)
.|++ +++++|.+. +-.+.+|+.-.+-+++.++-.+++ .+.+++.+...|..|-.++..
T Consensus 149 ~rlik~e~l~p~~~~---------lll~~iL~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~ 210 (264)
T 2ilr_A 149 CCLVKMESLEPDAQV---------LMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLA 210 (264)
T ss_dssp HHHHHCTTSCHHHHH---------HHHHHHHHSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC----
T ss_pred HHHHHhccCCHHHHH---------HHHHHHHhccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHH
Confidence 3566 788888776 334555778888999999999999 556889999999988876654
No 81
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=33.70 E-value=83 Score=20.21 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=24.9
Q ss_pred cCCCCHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHhCC
Q 040572 93 DTGLDRHTLSVLIALCDLGV-----------NPEALAAVVKELQREP 128 (142)
Q Consensus 93 NTGLDReTLsICI~LcE~GV-----------NPEALA~VIKELRrE~ 128 (142)
..||+...+.++..|...|+ ++.++..+|+.|-+..
T Consensus 32 ~~~l~~~~~~iL~~l~~~~~~~~ela~~l~~s~~tvs~~l~~Le~~g 78 (146)
T 2gxg_A 32 ELNLSYLDFLVLRATSDGPKTMAYLANRYFVTQSAITASVDKLEEMG 78 (146)
T ss_dssp TTTCCHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred hcCCCHHHHHHHHHHhcCCcCHHHHHHHhCCCchhHHHHHHHHHHCC
Confidence 56999999999988874444 4445555677776654
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.02 E-value=55 Score=16.99 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=7.6
Q ss_pred CCCHHHHHHHHHHH
Q 040572 111 GVNPEALAAVVKEL 124 (142)
Q Consensus 111 GVNPEALA~VIKEL 124 (142)
||++..+...++..
T Consensus 32 gis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 32 SRSRHCIRVYLKDP 45 (51)
T ss_dssp TCCHHHHHHHHHCS
T ss_pred CcCHHHHHHHHhhH
Confidence 56655555555443
No 83
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=32.95 E-value=71 Score=21.67 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 040572 80 ESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 80 EtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a 130 (142)
.-+++|.-+..--+--++++.|.-.|-=-+..++..+|...|..||+....
T Consensus 47 ~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 97 (121)
T 2hwv_A 47 REFELLYYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIED 97 (121)
T ss_dssp HHHHHHHHHHHTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhh
Confidence 345666666665567799998876553234457899999999999998754
No 84
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=32.91 E-value=30 Score=23.60 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHhCCC
Q 040572 111 GVNPEALAAVVKELQREPS 129 (142)
Q Consensus 111 GVNPEALA~VIKELRrE~~ 129 (142)
|++++.+..++++|+++.-
T Consensus 180 g~sr~tvsR~l~~L~~~g~ 198 (220)
T 3dv8_A 180 GSHREVITRMLRYFQVEGL 198 (220)
T ss_dssp TCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998864
No 85
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=32.87 E-value=20 Score=28.04 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+-.||..-
T Consensus 253 ei~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~ 297 (470)
T 2ij2_A 253 NIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARV 297 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 345555666666666666666666666677999998888888754
No 86
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=32.81 E-value=61 Score=20.92 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHH
Q 040572 94 TGLDRHTLSVLIALCDLGVNPEALAA 119 (142)
Q Consensus 94 TGLDReTLsICI~LcE~GVNPEALA~ 119 (142)
.||+...+.|+..|.+.|+++..||.
T Consensus 34 ~~lt~~~~~iL~~l~~~~~t~~eLa~ 59 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEESLTNSELAR 59 (146)
T ss_dssp SCCCHHHHHHHHHHTTCCCCHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCCCCHHHHHH
Confidence 38888888888888887766666654
No 87
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=32.62 E-value=1e+02 Score=19.89 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=25.0
Q ss_pred cCCCCHHHHHHHHHHHh-CC------------CCHHHHHHHHHHHHhCC
Q 040572 93 DTGLDRHTLSVLIALCD-LG------------VNPEALAAVVKELQREP 128 (142)
Q Consensus 93 NTGLDReTLsICI~LcE-~G------------VNPEALA~VIKELRrE~ 128 (142)
..||+...+.++..|.+ .| +++.++..+|+.|-+..
T Consensus 30 ~~~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~g 78 (147)
T 2hr3_A 30 ADPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGG 78 (147)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCC
Confidence 34777888888888886 33 56666666777776654
No 88
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=32.61 E-value=30 Score=23.53 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHhCCC
Q 040572 111 GVNPEALAAVVKELQREPS 129 (142)
Q Consensus 111 GVNPEALA~VIKELRrE~~ 129 (142)
|++++.+..++++|+++.-
T Consensus 174 g~sr~tvsR~l~~l~~~g~ 192 (216)
T 4ev0_A 174 GTSRETVSRVLHALAEEGV 192 (216)
T ss_dssp TSCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8899999999999998864
No 89
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=32.58 E-value=21 Score=27.76 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+..||..-
T Consensus 245 ~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~Ei~~~ 289 (455)
T 2cib_A 245 EITGMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDELDEL 289 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 455666667777777777777777777777999999888888653
No 90
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=32.52 E-value=21 Score=27.66 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQR 126 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRr 126 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+-.||..
T Consensus 263 ei~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~lr~Ei~~ 306 (467)
T 3dbg_A 263 EIHDQVVAILTPGSETIASTIMWLLQALADHPEHADRIRDEVEA 306 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 56677778888898888888888888888899999888888765
No 91
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=32.23 E-value=43 Score=17.92 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=7.7
Q ss_pred CCCCHHHHHHHHH
Q 040572 110 LGVNPEALAAVVK 122 (142)
Q Consensus 110 ~GVNPEALA~VIK 122 (142)
.||+...+-..++
T Consensus 31 lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 31 FGIGVSTLYRYFP 43 (52)
T ss_dssp TSCCHHHHHHHSC
T ss_pred HCCCHHHHHHHHH
Confidence 4777666655543
No 92
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=32.08 E-value=32 Score=23.89 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 94 TGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 94 TGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
-.++++.|+-.+ |++++.+..++++|+++.-
T Consensus 174 ~~~t~~~iA~~l-----g~sr~tvsR~l~~L~~~g~ 204 (231)
T 3e97_A 174 LPLGTQDIMART-----SSSRETVSRVLKRLEAHNI 204 (231)
T ss_dssp ECCCHHHHHHHH-----TCCHHHHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHh-----CCcHHHHHHHHHHHHHCCc
Confidence 345566555443 8899999999999998864
No 93
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA processing, multifunctional enzyme, nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A
Probab=32.01 E-value=45 Score=25.50 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Q 040572 95 GLDRHTLSVLIALCD-LGVNPEALAAVVKELQR 126 (142)
Q Consensus 95 GLDReTLsICI~LcE-~GVNPEALA~VIKELRr 126 (142)
|++|...-+|.-|++ .|++++.-.+.|++.|.
T Consensus 151 G~gRTGt~ia~yLm~~~~~s~~eAi~~vr~~R~ 183 (241)
T 2c46_A 151 GFNRTGFLICAFLVEKMDWSIEAAVATFAQARP 183 (241)
T ss_dssp SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHCC
Confidence 999999999999998 79997765555555553
No 94
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=31.99 E-value=23 Score=27.56 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
+++..+-.++-.|.+-.+-.++..|.+..-||+.++.+..||..-
T Consensus 257 ei~~~~~~~~~ag~~tt~~~l~~~l~~L~~~P~~~~~l~~Ei~~~ 301 (491)
T 3v8d_A 257 EKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRT 301 (491)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 455566666677877777777777777778999999998888754
No 95
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=31.95 E-value=52 Score=25.86 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=25.4
Q ss_pred HHHH-HHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 98 RHTL-SVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 98 ReTL-sICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
.+.+ .+...|++++|+++....++.+|+++.
T Consensus 29 ~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~ 60 (304)
T 1rj9_A 29 EEVLEELEMALLAADVGLSATEEILQEVRASG 60 (304)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4444 578899999999999999999888754
No 96
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=31.64 E-value=65 Score=22.18 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=23.4
Q ss_pred cCCCCHHHHHHHHHHHhCC----CCHHHHHHH
Q 040572 93 DTGLDRHTLSVLIALCDLG----VNPEALAAV 120 (142)
Q Consensus 93 NTGLDReTLsICI~LcE~G----VNPEALA~V 120 (142)
..||+...+.|+..|.+.| +++..||..
T Consensus 64 ~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~ 95 (181)
T 2fbk_A 64 ASGLNAAGWDLLLTLYRSAPPEGLRPTELSAL 95 (181)
T ss_dssp TTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4699999999999999865 788888764
No 97
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=31.60 E-value=33 Score=23.78 Aligned_cols=20 Identities=5% Similarity=-0.009 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHHhCCC
Q 040572 110 LGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 110 ~GVNPEALA~VIKELRrE~~ 129 (142)
.|++++.+..++++|+++.-
T Consensus 190 lg~sr~tvsR~l~~l~~~g~ 209 (232)
T 2gau_A 190 SNMTVSNAIRTLSTFVSERM 209 (232)
T ss_dssp TTSCHHHHHHHHHHHHHTTS
T ss_pred hCCCHHHHHHHHHHHHHCCC
Confidence 48899999999999998764
No 98
>1y6x_A Phosphoribosyl-ATP pyrophosphatase; helical bundle, histidine, hydrolase, ST genomics, PSI, protein structure initiative; 1.25A {Mycobacterium tuberculosis} SCOP: a.204.1.4 PDB: 3c90_X
Probab=31.60 E-value=51 Score=23.14 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALA 118 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA 118 (142)
++++|+|+|| .-++|-|...||.|+.+.
T Consensus 63 ~l~~E~ADLl--------YHllVlL~~~gv~l~dV~ 90 (93)
T 1y6x_A 63 ALAEEISQLL--------YWTQVLMISRGLSLDDVY 90 (93)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHcCCCHHHHH
Confidence 3688888887 457788999999988653
No 99
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=31.49 E-value=33 Score=23.21 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHHhCCC
Q 040572 110 LGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 110 ~GVNPEALA~VIKELRrE~~ 129 (142)
.|++++.+..++++|+++.-
T Consensus 177 lg~sr~tvsR~l~~L~~~g~ 196 (210)
T 3ryp_A 177 VGCSRETVGRILKMLEDQNL 196 (210)
T ss_dssp HTCCHHHHHHHHHHHHHTTS
T ss_pred hCCcHHHHHHHHHHHHHCCc
Confidence 38899999999999999864
No 100
>1p8c_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Thermotoga maritima} SCOP: a.152.1.2
Probab=30.86 E-value=1.5e+02 Score=21.26 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHh--cCCCCHHHHHHH-------------H-----HHHhCCCCHHHHHHHHH
Q 040572 79 RESLDLAFHMSNIL--DTGLDRHTLSVL-------------I-----ALCDLGVNPEALAAVVK 122 (142)
Q Consensus 79 rEtLDiL~EIS~LL--NTGLDReTLsIC-------------I-----~LcE~GVNPEALA~VIK 122 (142)
-+.++.+..+..-+ ..+||+.+..++ + ...++|+.++.|.++|.
T Consensus 44 P~~~~~~~~l~~~i~~~~~Ld~k~rELI~Lavs~~ngC~~cl~~H~~~A~~~G~T~eEI~eal~ 107 (145)
T 1p8c_A 44 TLNTKRFFNLDSAVYRPGKLDVKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALD 107 (145)
T ss_dssp CHHHHHHHHHHHHTTSCSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34455555555443 468998876542 2 24678888888877664
No 101
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=30.69 E-value=35 Score=23.48 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHHhCCC
Q 040572 110 LGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 110 ~GVNPEALA~VIKELRrE~~ 129 (142)
.|++++.|..++++|+++.-
T Consensus 197 lg~sr~tvsR~l~~L~~~g~ 216 (230)
T 3iwz_A 197 VGCSREMAGRVLKKLQADGL 216 (230)
T ss_dssp HTCCHHHHHHHHHHHHHTTS
T ss_pred hCCcHHHHHHHHHHHHHCCC
Confidence 38999999999999999864
No 102
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=30.67 E-value=31 Score=27.51 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040572 97 DRHTLSVLIALCDLGVNPEALAAVVKEL 124 (142)
Q Consensus 97 DReTLsICI~LcE~GVNPEALA~VIKEL 124 (142)
|-+.|.....|++.|++++....+++-|
T Consensus 119 DV~aLr~l~~lv~~G~~~~~~v~l~Ral 146 (222)
T 2ev1_A 119 DGEAAARAQRFVELGLNPDQVVLVVRVL 146 (222)
T ss_dssp HHHHHTTHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5567777777777777776665555443
No 103
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=30.43 E-value=83 Score=18.49 Aligned_cols=51 Identities=6% Similarity=0.048 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhCCCCHHH---HHHHHH
Q 040572 68 DDMDPEAARTARESLDLAFHMSNILDTG-LDRHTLSVLIALCDLGVNPEA---LAAVVK 122 (142)
Q Consensus 68 ~~md~d~~~aArEtLDiL~EIS~LLNTG-LDReTLsICI~LcE~GVNPEA---LA~VIK 122 (142)
..+.++.....+++|+.+ +.=+.| |+.+-|.-++.-+...++.+. +..+++
T Consensus 6 ~~l~~~~~~~l~~~F~~~----D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIF----DRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCSSTHHHHHHHHHHHH----STTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHh----CCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344455555555555543 222334 788888877776655555555 444443
No 104
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=30.30 E-value=23 Score=27.16 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKE 123 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKE 123 (142)
+++..+..++-.|.|-.+-.++..|....-||+.++.+..|
T Consensus 221 ~i~~~~~~l~~AG~~Tt~~~l~~~l~~L~~~P~~~~~l~~E 261 (398)
T 4fb2_A 221 DLIGFFTILLLGGIDNTARFLSSVFWRLAWDIELRRRLIAH 261 (398)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 35555666666777777777777777777788876654433
No 105
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=30.03 E-value=20 Score=27.15 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVV 121 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VI 121 (142)
+++..+..++-.|.|-.+-.++..|....-||+.++.+.
T Consensus 215 ~l~~~~~~~~~AG~~Tta~~l~~~l~~L~~~P~~~~~l~ 253 (384)
T 3oo3_A 215 ELAGLAEGNLIMAAEQMAAQLAVAVLLLVTHPDQMALLR 253 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 455666677777877777777777777788998765443
No 106
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=29.58 E-value=60 Score=21.65 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 040572 80 ESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 80 EtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a 130 (142)
.-+++|.-+..=-+--++++.|.-.|-=-+..++..+|...|..||+....
T Consensus 40 ~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 90 (120)
T 2z9m_A 40 REFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIED 90 (120)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHCCCceEcHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhc
Confidence 446677666665566789998866554335567889999999999997754
No 107
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=28.82 E-value=77 Score=22.00 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCC
Q 040572 79 RESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPSPS 131 (142)
Q Consensus 79 rEtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a~ 131 (142)
..-|++|.-+..=-+-=++|+.|.-.|-=-+..++..+|-..|..||+.....
T Consensus 39 ~~E~~lL~~L~~~~g~vvsre~L~~~vWg~~~~~~~~~l~v~I~rLRkKL~~~ 91 (120)
T 2zxj_A 39 HREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDD 91 (120)
T ss_dssp HHHHHHHHHHHTTTTCCBCHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcChHHHHHHHHHHHhhC
Confidence 34577888777777778999998766654466678889999999999977653
No 108
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=28.78 E-value=34 Score=26.52 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKE 123 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKE 123 (142)
+++..+..++-.|.|-.+-.++..|....-||+.++.+-.|
T Consensus 245 ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l~~E 285 (421)
T 3lxh_A 245 RALGLVSLLLLGGLDTVVNFLGFMMIYLSRHPETVAEMRRE 285 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCHHHHHHHHhC
Confidence 34555666666777777777777788888899876654443
No 109
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=28.46 E-value=39 Score=23.36 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 96 LDRHTLSVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 96 LDReTLsICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
+.++.|+-. .|++++.+..++++|+++.-
T Consensus 178 ~t~~~lA~~-----lg~sr~tvsR~l~~l~~~g~ 206 (227)
T 3d0s_A 178 LTQEEIAQL-----VGASRETVNKALADFAHRGW 206 (227)
T ss_dssp CCHHHHHHH-----HTSCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHH-----hCCcHHHHHHHHHHHHHCCC
Confidence 455544433 58999999999999998764
No 110
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=28.38 E-value=35 Score=26.42 Aligned_cols=37 Identities=14% Similarity=-0.080 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAV 120 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~V 120 (142)
+++.++..++-.| |-.+-.++..|....-||+.++.+
T Consensus 231 el~~~~~~l~~AG-eTt~~~l~~~l~~L~~~P~~~~~l 267 (406)
T 1s1f_A 231 EAVGLAVLLQIGG-EAVTNNSGQMFHLLLSRPELAERL 267 (406)
T ss_dssp HHHHHHHHHHHHT-THHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHHHHHHCHHHHHHH
Confidence 5677788888899 988888888888888899875543
No 111
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=28.36 E-value=1.3e+02 Score=19.94 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=14.8
Q ss_pred HHhCCCCHHHHHHHHHHHHhC
Q 040572 107 LCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 107 LcE~GVNPEALA~VIKELRrE 127 (142)
|-+.||+++.|...|.++|..
T Consensus 126 L~~~gi~~~~l~~~l~~~rg~ 146 (148)
T 1khy_A 126 LKAAGATTANITQAIEQMRGG 146 (148)
T ss_dssp HHHTTCCHHHHHHHHHC----
T ss_pred HHHcCCCHHHHHHHHHHHHCC
Confidence 556799999999999888853
No 112
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=28.32 E-value=40 Score=22.99 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHhCCC
Q 040572 111 GVNPEALAAVVKELQREPS 129 (142)
Q Consensus 111 GVNPEALA~VIKELRrE~~ 129 (142)
|++++.+..++++|+++.-
T Consensus 157 g~sr~tvsR~l~~L~~~g~ 175 (202)
T 2zcw_A 157 GSVRETVTKVIGELAREGY 175 (202)
T ss_dssp TCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 7888888888888888753
No 113
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=28.06 E-value=1.2e+02 Score=19.60 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHh
Q 040572 97 DRHTLSVLIALCDL-----------GVNPEALAAVVKELQR 126 (142)
Q Consensus 97 DReTLsICI~LcE~-----------GVNPEALA~VIKELRr 126 (142)
|..-+.|+..|.+. |+++-++...|+.|.+
T Consensus 31 ~~~~~~il~~L~~~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 31 TPSRLMILTQLRNGPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455555555543 4556666666677655
No 114
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=28.03 E-value=50 Score=21.14 Aligned_cols=50 Identities=12% Similarity=-0.011 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 040572 81 SLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 81 tLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a 130 (142)
-+++|.-+..=-+--++++.|.-.|-=.+..++..+|...|..||+....
T Consensus 33 e~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 82 (102)
T 3zq7_A 33 EFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ 82 (102)
T ss_dssp HHHHHHHHHHTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhhc
Confidence 34566555544455589998765543224457888999999999997765
No 115
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=27.88 E-value=60 Score=21.55 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 040572 80 ESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 80 EtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a 130 (142)
.-+++|.-+..=-+--++++.|.-.|-=-+..++..+|...|..||+....
T Consensus 32 ~E~~lL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 82 (112)
T 2jzy_A 32 KEYVLLELLLQRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKIDD 82 (112)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhcC
Confidence 445667666665677799998865553223346788999999999998853
No 116
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=27.77 E-value=75 Score=20.80 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=21.0
Q ss_pred cCCCCHHHHHHHHHHHhC---CCCHHHHHH
Q 040572 93 DTGLDRHTLSVLIALCDL---GVNPEALAA 119 (142)
Q Consensus 93 NTGLDReTLsICI~LcE~---GVNPEALA~ 119 (142)
..||+...+.++..|.+. |+++..||.
T Consensus 36 ~~glt~~q~~vL~~l~~~~~~~~t~~eLa~ 65 (148)
T 3jw4_A 36 ELGLNSQQGRMIGYIYENQESGIIQKDLAQ 65 (148)
T ss_dssp HTTCCHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HCCCCHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 469999999999999885 566666654
No 117
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=27.76 E-value=41 Score=23.22 Aligned_cols=30 Identities=13% Similarity=0.499 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 95 GLDRHTLSVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 95 GLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
.+..+.|+-. .|++++.+..++++|+++.-
T Consensus 167 ~~t~~~lA~~-----lg~sr~tvsR~l~~l~~~g~ 196 (220)
T 2fmy_A 167 GLNTEEIALM-----LGTTRQTVSVLLNDFKKMGI 196 (220)
T ss_dssp SSCHHHHHHH-----HTSCHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHH-----hCCcHHHHHHHHHHHHHCCC
Confidence 4555555543 38999999999999998864
No 118
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=27.54 E-value=1.1e+02 Score=19.43 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=15.3
Q ss_pred HHHHh-cCCCCHHHHHHHHHHHh
Q 040572 88 MSNIL-DTGLDRHTLSVLIALCD 109 (142)
Q Consensus 88 IS~LL-NTGLDReTLsICI~LcE 109 (142)
+..++ +.||+.+-+..+..+++
T Consensus 99 ~~~~~~~~~ls~ee~~~l~~~L~ 121 (123)
T 1okr_A 99 VLNFVEKEDLSQDEIEELRNILN 121 (123)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 45566 35788888887777765
No 119
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=27.52 E-value=45 Score=22.19 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHH-----HHhcC--CCCHHHHHHHHHH-HhCCCCHHHHHHHHHHHHh
Q 040572 77 TARESLDLAFHMS-----NILDT--GLDRHTLSVLIAL-CDLGVNPEALAAVVKELQR 126 (142)
Q Consensus 77 aArEtLDiL~EIS-----~LLNT--GLDReTLsICI~L-cE~GVNPEALA~VIKELRr 126 (142)
.-.++++.+.+.- -|+.| |++|...-++.-| ...|++++.--+.|++.|.
T Consensus 66 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~~~~aylm~~~~~~~~~A~~~v~~~Rp 123 (144)
T 3ezz_A 66 WFMEAIEYIDAVKDCRGRVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRS 123 (144)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHHHCC
Confidence 3345555555432 23344 9999875544444 4599998876666666654
No 120
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=27.49 E-value=80 Score=22.38 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 040572 95 GLDRHTLSVLIALC-DLGVNPEALAAVVKE 123 (142)
Q Consensus 95 GLDReTLsICI~Lc-E~GVNPEALA~VIKE 123 (142)
.-.++++.+.-.|+ +.|++++.+..-+.+
T Consensus 157 ~tt~~~~~~aa~L~~~~g~d~~~i~~~l~~ 186 (188)
T 1wpn_A 157 TCTDQDVAAAKELAEIAGVDAEEYGLNMLK 186 (188)
T ss_dssp TCCHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34678999999999 699999998876654
No 121
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=27.17 E-value=55 Score=28.76 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------------hCCCCHHHHHHHHHH
Q 040572 74 AARTARESLDLAFHMSNILDTGLDRHTLSVLIALC------------DLGVNPEALAAVVKE 123 (142)
Q Consensus 74 ~~~aArEtLDiL~EIS~LLNTGLDReTLsICI~Lc------------E~GVNPEALA~VIKE 123 (142)
++++....++.+.-|++++.. .+.+-+..+|.|| +.||++..|+.+|.+
T Consensus 32 ~l~~t~~r~~k~~~l~~~~~~-~~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~~~~ 92 (621)
T 2hiv_A 32 KLEKISSRLQLTALLADLLSK-SDKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKAISI 92 (621)
T ss_dssp HHHHCCCHHHHHHHHHHHHHT-SCGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHh-cCchHHHHHHHHHhCCcCcccccccccCCCHHHHHHHHHH
Confidence 333444445566667787877 5677777778886 788988888777655
No 122
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=27.17 E-value=42 Score=23.25 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 040572 96 LDRHTLSVLIALCDLGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 96 LDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a 130 (142)
+.++.|+-.+ |++++.+..++++|+++.--
T Consensus 164 ~t~~~lA~~l-----G~sr~tvsR~l~~L~~~g~I 193 (222)
T 1ft9_A 164 FTVEEIANLI-----GSSRQTTSTALNSLIKEGYI 193 (222)
T ss_dssp CCHHHHHHHH-----CSCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHh-----CCcHHHHHHHHHHHHHCCcE
Confidence 5555555433 88999999999999988653
No 123
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=26.97 E-value=36 Score=22.84 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=3.0
Q ss_pred HHHhcCCCCHH
Q 040572 89 SNILDTGLDRH 99 (142)
Q Consensus 89 S~LLNTGLDRe 99 (142)
-.+|.-|+|.|
T Consensus 72 r~~l~~Gidp~ 82 (88)
T 3jtz_A 72 RKMLALNINLE 82 (88)
T ss_dssp HHHHTCC----
T ss_pred HHHHHcCCCch
Confidence 33444444443
No 124
>3bey_A Conserved protein O27018; TT217, NESG, structural genomics, PSI-2, PROT structure initiative; 2.40A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=26.94 E-value=1.2e+02 Score=19.08 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=22.0
Q ss_pred cCCCCHHHHHHH-------------H-----HHHhCCCCHHHHHHHHHH
Q 040572 93 DTGLDRHTLSVL-------------I-----ALCDLGVNPEALAAVVKE 123 (142)
Q Consensus 93 NTGLDReTLsIC-------------I-----~LcE~GVNPEALA~VIKE 123 (142)
+.+||+.+..+. + ...++|+.++.|.+++..
T Consensus 29 ~~~L~~~~reLi~l~vs~~ngc~~c~~~H~~~a~~~G~t~~ei~~~~~~ 77 (96)
T 3bey_A 29 EGKLTEREKLLISVACSVAVRCDACTRRHAEEALEAGITEGELAEAAAV 77 (96)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 568888776543 2 346788999988888754
No 125
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=26.88 E-value=33 Score=23.36 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHhCCC
Q 040572 110 LGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 110 ~GVNPEALA~VIKELRrE~~ 129 (142)
.|++++.+..++++|+++.-
T Consensus 149 lg~sr~tvsR~l~~L~~~g~ 168 (195)
T 3b02_A 149 TASIRESVSKVLADLRREGL 168 (195)
T ss_dssp TTSCHHHHHHHHHHHHHHTS
T ss_pred hCCCHHHHHHHHHHHHHCCC
Confidence 47889999999999988753
No 126
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=26.72 E-value=1.3e+02 Score=19.27 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHH------HHHHhc-CCCCHHHHHHHHHHHh
Q 040572 76 RTARESLDLAFH------MSNILD-TGLDRHTLSVLIALCD 109 (142)
Q Consensus 76 ~aArEtLDiL~E------IS~LLN-TGLDReTLsICI~LcE 109 (142)
...++.++-+++ ++.+++ .||+.+-+..+.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~L~ 121 (126)
T 1sd4_A 81 KTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILN 121 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445555555543 334443 5777777777776664
No 127
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=26.53 E-value=1.4e+02 Score=19.67 Aligned_cols=43 Identities=9% Similarity=0.092 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 81 SLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 81 tLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
-+||+++|=..+.-|+.+..|+- ..|+++..+..++..|.+..
T Consensus 6 ~~eIi~~IL~~i~~~~~~t~La~-----~~~ls~~~~~~~l~~L~~~G 48 (95)
T 1r7j_A 6 KLEIIQAILEACKSGSPKTRIMY-----GANLSYALTGRYIKMLMDLE 48 (95)
T ss_dssp HHHHHHHHHHHHTTCBCHHHHHH-----HHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH-----HhCcCHHHHHHHHHHHHHCC
Confidence 46777777666666777777754 46899999999999998764
No 128
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=26.40 E-value=1.5e+02 Score=20.08 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=30.9
Q ss_pred cCCCCHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 040572 93 DTGLDRHTLSVLIALCDL-------GVNPEALAAVVKELQREPSPSPPMSTAPS 139 (142)
Q Consensus 93 NTGLDReTLsICI~LcE~-------GVNPEALA~VIKELRrE~~a~~~~~~~p~ 139 (142)
+-+++... |+-.|.+. .+++..+...|++.++....+.....+|.
T Consensus 99 ~~~~s~~~--i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~~~~~ 150 (159)
T 2k27_A 99 NPTMFAWE--IRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSGAPG 150 (159)
T ss_dssp CSSSCHHH--HHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCCCCCC
T ss_pred CccchHHH--HHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccCCCCC
Confidence 34555443 34445443 48999999999999998887776666664
No 129
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=26.31 E-value=44 Score=23.75 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHhCCC
Q 040572 111 GVNPEALAAVVKELQREPS 129 (142)
Q Consensus 111 GVNPEALA~VIKELRrE~~ 129 (142)
|++++.+..++++|+++.-
T Consensus 204 G~sr~tvsR~l~~L~~~Gl 222 (243)
T 3la7_A 204 GSTRVTVTRLLGDLREKKM 222 (243)
T ss_dssp TCCHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHHHCCC
Confidence 7899999999999999864
No 130
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=26.31 E-value=33 Score=26.36 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=30.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 87 HMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 87 EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
++-.++-.|.|-.+-.++..|.+..-||+.+..+-.||..-
T Consensus 261 ~~~~~~~ag~~tta~tl~~~l~~L~~~P~~~~kl~~Ei~~v 301 (491)
T 3dax_A 261 THLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRT 301 (491)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 44445556777666677777777778999999999998754
No 131
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=26.24 E-value=44 Score=23.50 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHhCCC
Q 040572 111 GVNPEALAAVVKELQREPS 129 (142)
Q Consensus 111 GVNPEALA~VIKELRrE~~ 129 (142)
|++++.|..++++|+++.-
T Consensus 197 G~sr~tvsR~l~~l~~~gl 215 (232)
T 1zyb_A 197 DDTRLNISKTLNELQDNGL 215 (232)
T ss_dssp TSCHHHHHHHHHHHHHTTS
T ss_pred CCChhHHHHHHHHHHHCCC
Confidence 8899999999999999864
No 132
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.09 E-value=1.5e+02 Score=20.91 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCC
Q 040572 79 RESLDLAFHMSNILDTGLDRHTLSVLIALCDLGV 112 (142)
Q Consensus 79 rEtLDiL~EIS~LLNTGLDReTLsICI~LcE~GV 112 (142)
.+.++.|..|-.|-+.|++=+.+.-++.+++.|-
T Consensus 57 ~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~ 90 (148)
T 3gpv_A 57 EEALKYLEMILCLKNTGMPIQKIKQFIDWSMEGD 90 (148)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcCC
Confidence 3677888899999999999999999999988774
No 133
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=25.87 E-value=36 Score=23.36 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHHHHhCCC
Q 040572 110 LGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 110 ~GVNPEALA~VIKELRrE~~ 129 (142)
.|++++.+..++++|+++.-
T Consensus 188 lg~sr~tvsR~l~~l~~~g~ 207 (227)
T 3dkw_A 188 LSIQPETFSRIMHRLGDEGI 207 (227)
T ss_dssp TTSCHHHHHHHHHHHHHHTS
T ss_pred hCCCHHHHHHHHHHHHHCCc
Confidence 48899999999999998764
No 134
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=25.74 E-value=25 Score=26.82 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVV 121 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VI 121 (142)
+++..+..++-.|.|-.+-.++..|....-||+.++.+.
T Consensus 223 el~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~ 261 (404)
T 3ejb_B 223 EAASTCILLAIAGHETTVNLISNSVLCLLQHPEQLLKLR 261 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 345556666677777777777777777777998765443
No 135
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=25.72 E-value=81 Score=26.22 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCCCHH----HH-HHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 040572 94 TGLDRH----TL-SVLIALCDLGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 94 TGLDRe----TL-sICI~LcE~GVNPEALA~VIKELRrE~~ 129 (142)
..||.+ .| .++..|++++||++....+|.++++...
T Consensus 20 ~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~ 60 (433)
T 2xxa_A 20 GRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60 (433)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 357874 43 4888999999999999999999987443
No 136
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=25.63 E-value=1.4e+02 Score=19.48 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 80 ESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 80 EtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
+..++|..+..-.+..++.+.+..+++.+ |=||..|..++..+-..
T Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~--~g~~r~l~~~l~~~~~~ 210 (226)
T 2chg_A 165 AMKKRLLEICEKEGVKITEDGLEALIYIS--GGDFRKAINALQGAAAI 210 (226)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHH--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhc
Confidence 44556666665567779999999998876 44898888877766543
No 137
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=25.45 E-value=1.5e+02 Score=19.67 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHhC
Q 040572 69 DMDPEAARTARESLD--LAFHMSNILDTGLDRHTLSVLIALCD------------LGVNPEALAAVVKELQRE 127 (142)
Q Consensus 69 ~md~d~~~aArEtLD--iL~EIS~LLNTGLDReTLsICI~LcE------------~GVNPEALA~VIKELRrE 127 (142)
+.+++.+..+.+.+. -+.+++.++..=-|..-+.|+..|.+ .|+++-++...++.|.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~ 83 (122)
T 1u2w_A 11 GYDEEKVNRIQGDLQTVDISGVSQILKAIADENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQ 83 (122)
T ss_dssp CCSHHHHHHHHHHHHTTTHHHHHHHHHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhCChHHHHHHHHHHHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 445555555544442 13333333333235555555555552 245555666666666644
No 138
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=25.39 E-value=23 Score=23.51 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=27.0
Q ss_pred cCCCCHHHHHHHHHHHhC---CC-----------CHHHHHHHHHHHHhCCCC
Q 040572 93 DTGLDRHTLSVLIALCDL---GV-----------NPEALAAVVKELQREPSP 130 (142)
Q Consensus 93 NTGLDReTLsICI~LcE~---GV-----------NPEALA~VIKELRrE~~a 130 (142)
..||+...+.++..|.+. |+ ++.++..+|+.|-+..--
T Consensus 32 ~~~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv 83 (127)
T 2frh_A 32 EFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYF 83 (127)
T ss_dssp TTCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSS
T ss_pred HcCCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 459999999999999885 34 444555567777665443
No 139
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=25.00 E-value=2.1e+02 Score=21.10 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=32.2
Q ss_pred cCCCCHHHHHHHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 040572 67 VDDMDPEAARTAR-ESLDLAFHMSNILDTGLDRHTLSVLIALCD 109 (142)
Q Consensus 67 ~~~md~d~~~aAr-EtLDiL~EIS~LLNTGLDReTLsICI~LcE 109 (142)
.|.|+++.-...+ ..++.|.+++..| +|..+|+...+.+++
T Consensus 29 ~~~~~~~~e~~~R~~~~~~i~~v~~~l--~l~~~t~~~A~~~~d 70 (258)
T 2i53_A 29 LEGLDPATEARYRREGARFIFDVGTRL--GLHYDTLATGIIYFH 70 (258)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHH
Confidence 4678776555544 5789999999877 588999999999876
No 140
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=24.99 E-value=40 Score=26.39 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKEL 124 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKEL 124 (142)
+++..+..++-.|.|-.+-.++..|....-||+.++.+-.|+
T Consensus 257 ei~~~~~~ll~AG~dTTa~~l~~~l~~L~~~P~~~~~l~~E~ 298 (433)
T 3ivy_A 257 EFGFFVVMLAVAGNETTRNSITQGMMAFAEHPDQWELYKKVR 298 (433)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCHHHHHHHHhCc
Confidence 345556666667777777777777777777999877765554
No 141
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=24.85 E-value=45 Score=26.30 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKEL 124 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKEL 124 (142)
+++..+..++-.|.|-.+-.++..|....-||+.++.+..|+
T Consensus 263 ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l~~E~ 304 (435)
T 2wm5_A 263 EIASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWWSDF 304 (435)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCHHHHHHHhCh
Confidence 345556666667777766666666666666888766554443
No 142
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=24.75 E-value=36 Score=25.66 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Q 040572 99 HTLSVLIALCDLGVNPEALAAVV 121 (142)
Q Consensus 99 eTLsICI~LcE~GVNPEALA~VI 121 (142)
.-...+--|.+.|++++.++.+|
T Consensus 40 ~l~~~l~fL~~lG~~~~~i~~il 62 (270)
T 3m66_A 40 DIKQMLLFLKDVGIEDNQLGAFL 62 (270)
T ss_dssp HTHHHHHHHHHHTCCGGGHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHH
Confidence 33334444444455544444444
No 143
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=24.75 E-value=47 Score=23.08 Aligned_cols=19 Identities=32% Similarity=0.593 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 040572 110 LGVNPEALAAVVKELQREP 128 (142)
Q Consensus 110 ~GVNPEALA~VIKELRrE~ 128 (142)
.|+.++.|..++++|+++.
T Consensus 188 lg~sr~tvsR~l~~L~~~g 206 (237)
T 3fx3_A 188 LGMKPESLSRAFSRLKAAG 206 (237)
T ss_dssp TTCCHHHHHHHHHHHGGGT
T ss_pred hCCCHHHHHHHHHHHHHCC
Confidence 5889999999999998876
No 144
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=24.74 E-value=35 Score=26.64 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVV 121 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VI 121 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+.
T Consensus 239 ei~~~~~~l~~AG~eTt~~~l~~~l~~L~~~P~~~~~l~ 277 (414)
T 2uuq_A 239 SILAFTFTMVTGGNDTVTGMLGGSMPLLHRRPDQRRLLL 277 (414)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 567778888888999888888888888888999765543
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=24.46 E-value=2.1e+02 Score=20.87 Aligned_cols=47 Identities=4% Similarity=-0.036 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 80 ESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 80 EtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
+..+++..+..-.+..++.+.+..++..+ +=||..|..++..+...+
T Consensus 172 e~~~~l~~~~~~~~~~~~~~~~~~l~~~~--~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 172 ELAQGVMRDARLLGVRITEEAALEIGRRS--RGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHS--CSCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHc--cCCHHHHHHHHHHHHHHH
Confidence 34556666666667789999999988886 458888888888776544
No 146
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=24.37 E-value=64 Score=20.91 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 040572 80 ESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 80 EtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a 130 (142)
.-+++|.-+..=-+--++++.|.-.|-=-+..++..+|...|..||+....
T Consensus 35 ~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (106)
T 1gxq_A 35 TEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP 85 (106)
T ss_dssp HHHHHHHHHHHSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 345666666555566789988766553223347889999999999997653
No 147
>2cwq_A Hypothetical protein TTHA0727; conserved hypothetical protein, all alpha, structural genomi NPPSFA; 1.90A {Thermus thermophilus} SCOP: a.152.1.4
Probab=24.18 E-value=1.7e+02 Score=20.34 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=24.9
Q ss_pred HHHHHhc-CCCCHHHHHH-------------HH-----HHHhCCCCHHHHHHHHHH
Q 040572 87 HMSNILD-TGLDRHTLSV-------------LI-----ALCDLGVNPEALAAVVKE 123 (142)
Q Consensus 87 EIS~LLN-TGLDReTLsI-------------CI-----~LcE~GVNPEALA~VIKE 123 (142)
.+..+++ .+||+.+..+ || .+..+|+.++.|.++|.-
T Consensus 62 ~~~~~~~~g~Ld~k~reLI~lavs~~ngC~~Cl~~H~~~A~~~G~t~eeI~eal~~ 117 (137)
T 2cwq_A 62 WTYAMPEKGALDEKTRTLILLGIALATGSEACVKAMAHRAKRLGLSKEALLETLKI 117 (137)
T ss_dssp HHHHSCTTCSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4445554 4699988654 33 356788999888887753
No 148
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=24.00 E-value=2.1e+02 Score=21.15 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=31.7
Q ss_pred cCCCCHHHHHHHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 040572 67 VDDMDPEAARTAR-ESLDLAFHMSNILDTGLDRHTLSVLIALCD 109 (142)
Q Consensus 67 ~~~md~d~~~aAr-EtLDiL~EIS~LLNTGLDReTLsICI~LcE 109 (142)
.|.|+++.-...+ ..++.|.+++..|+ |..+|+.+.+.+++
T Consensus 19 ~~g~~~~~e~~~R~~~~~~i~~v~~~l~--l~~~t~~~A~~~~d 60 (257)
T 2ivx_A 19 RCGVEADKELSCRQQAANLIQEMGQRLN--VSQLTINTAIVYMH 60 (257)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 4677776544443 57899999998875 88999999999886
No 149
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=23.88 E-value=62 Score=25.20 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=8.7
Q ss_pred HHHHhCCCCHHHHHHHHHHH
Q 040572 105 IALCDLGVNPEALAAVVKEL 124 (142)
Q Consensus 105 I~LcE~GVNPEALA~VIKEL 124 (142)
..|+++||+++....++.+|
T Consensus 47 ~~L~~~dv~~~~~~~~~~~~ 66 (296)
T 2px0_A 47 KLLQETGIKESTKTNTLKKL 66 (296)
T ss_dssp HHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHH
Confidence 34444444444444444444
No 150
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=23.83 E-value=1.5e+02 Score=18.95 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=26.4
Q ss_pred cCCCCHHHHHHHHHHHhCC--------------CCHHHHHHHHHHHHhCC
Q 040572 93 DTGLDRHTLSVLIALCDLG--------------VNPEALAAVVKELQREP 128 (142)
Q Consensus 93 NTGLDReTLsICI~LcE~G--------------VNPEALA~VIKELRrE~ 128 (142)
..||+...+.++..|.+.| +++.++..+|+.|-+..
T Consensus 26 ~~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~G 75 (139)
T 3eco_A 26 QFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKK 75 (139)
T ss_dssp GGTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCC
Confidence 4699999999999999874 45556666666665543
No 151
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=23.60 E-value=75 Score=19.98 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHH
Q 040572 78 ARESLDLAFHMSNILDTGLDRHT 100 (142)
Q Consensus 78 ArEtLDiL~EIS~LLNTGLDReT 100 (142)
|-+-|+.|++|+..|+..+|-+.
T Consensus 3 al~~L~~L~~i~~~l~~~~~~~~ 25 (171)
T 3trc_A 3 AMNMLKILRQITQEVNAAPNLEQ 25 (171)
T ss_dssp HHHHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHHHhcccCHHH
Confidence 44568999999999999998654
No 152
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.51 E-value=44 Score=22.01 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=24.6
Q ss_pred HHHhCCCCH-H---HHHHHHHHHHhCCCCCCCCCCCCCC
Q 040572 106 ALCDLGVNP-E---ALAAVVKELQREPSPSPPMSTAPSS 140 (142)
Q Consensus 106 ~LcE~GVNP-E---ALA~VIKELRrE~~a~~~~~~~p~~ 140 (142)
.|.+.||.. . .|...|++||........+.+.|||
T Consensus 49 dL~~lGI~~~GhRkkIl~ai~~l~~~~~~~~~p~~~~~~ 87 (88)
T 2e8n_A 49 DVKRIGVRLPGHQKRIAYSLLGLKDQVNTVGIPISGPSS 87 (88)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHHHCSSCCCCSSCC
T ss_pred HHHHCCCCChhHHHHHHHHHHHHHHhhcccCCCCCCCCC
Confidence 366889963 3 3666778888777666667778887
No 153
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Probab=23.39 E-value=61 Score=24.11 Aligned_cols=50 Identities=6% Similarity=-0.071 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHH------HHhcC--CCCHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Q 040572 76 RTARESLDLAFHMS------NILDT--GLDRHTLS-VLIALCDLGVNPEALAAVVKELQ 125 (142)
Q Consensus 76 ~aArEtLDiL~EIS------~LLNT--GLDReTLs-ICI~LcE~GVNPEALA~VIKELR 125 (142)
..-.++++.|.+.- -|+.| |++|...- +|+-|...|++++.--+.|++.|
T Consensus 122 ~~~~~~~~fI~~~l~~~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~s~~eAl~~vr~~R 180 (219)
T 2y96_A 122 VFFYPAAAFIDRALSDDHSKILVHCVMGRSRSATLVLAYLMIHKDMTLVDAIQQVAKNR 180 (219)
T ss_dssp GGHHHHHHHHHHHHTSTTCCEEEECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHccCCeEEEECCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34455666655532 13444 99998764 44455678998876555566544
No 154
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.30 E-value=1.1e+02 Score=22.56 Aligned_cols=41 Identities=5% Similarity=0.020 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHH-HHHHHH
Q 040572 85 AFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAA-VVKELQ 125 (142)
Q Consensus 85 L~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~-VIKELR 125 (142)
++++-+.+..|--...+.++-.|+..|++|..+.. +++.++
T Consensus 268 ~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~ 309 (353)
T 1sxj_D 268 LIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYI 309 (353)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44444444445455677888888888988887543 444444
No 155
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=23.06 E-value=23 Score=21.81 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 040572 85 AFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 85 L~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a 130 (142)
..-++++|+ ++.+.+..=-.|.+.|++.-....++..|+++-..
T Consensus 17 ~~~~~~~l~--~~~~~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~ 60 (89)
T 2kr5_A 17 MRVVSEESG--IALEELTDDSNFADMGIDSLSSMVIGSRFREDLGL 60 (89)
T ss_dssp HHHHHHHHC--CCGGGCCTTCBHHHHTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHC--cCHHHCCCCCCHHHcCccHHHHHHHHHHHHHHHCC
Confidence 344556664 44444444456788899999999999999998654
No 156
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=23.06 E-value=55 Score=23.69 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHHhCCC
Q 040572 110 LGVNPEALAAVVKELQREPS 129 (142)
Q Consensus 110 ~GVNPEALA~VIKELRrE~~ 129 (142)
.|++++.+..++++|+++.-
T Consensus 227 lG~sr~tvsR~l~~L~~~Gl 246 (260)
T 3kcc_A 227 VGCSRETVGRILKMLEDQNL 246 (260)
T ss_dssp HTCCHHHHHHHHHHHHHTTS
T ss_pred hCCCHHHHHHHHHHHHHCCC
Confidence 48899999999999999864
No 157
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=23.04 E-value=56 Score=23.15 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHhCCC
Q 040572 111 GVNPEALAAVVKELQREPS 129 (142)
Q Consensus 111 GVNPEALA~VIKELRrE~~ 129 (142)
|++++.+..++++|+++.-
T Consensus 188 G~sr~tvsR~l~~L~~~g~ 206 (250)
T 3e6c_C 188 GVHHVTVSRVLASLKRENI 206 (250)
T ss_dssp TCCHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHHHCCC
Confidence 7788888888888887753
No 158
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=22.99 E-value=69 Score=24.54 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=15.8
Q ss_pred ccccCCCCHHHHHHHHHHHH-HHHHH
Q 040572 64 SRLVDDMDPEAARTARESLD-LAFHM 88 (142)
Q Consensus 64 ~~~~~~md~d~~~aArEtLD-iL~EI 88 (142)
|-+.|+||+..+.+|-|.+. |+.||
T Consensus 25 saitddmdpadaaqavenvksiisei 50 (141)
T 2r9i_A 25 SAITDDMDPADAAQAVENVKSIISEI 50 (141)
T ss_dssp HHCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCChHHHHHHHHHHHHHHHHH
Confidence 56789999966655555443 34444
No 159
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=22.96 E-value=47 Score=25.96 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAV 120 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~V 120 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+
T Consensus 230 ei~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l 267 (404)
T 2xbk_A 230 RVAHLAMGLLFAGLDSVASIMDNGVVLLAAHPDQRAAA 267 (404)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 35556666777777777777766666666688765443
No 160
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=22.76 E-value=40 Score=26.26 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAV 120 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~V 120 (142)
+++..+..++-.|.|-.+-.++..|....-||+.++.+
T Consensus 225 ei~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l 262 (411)
T 3a4g_A 225 ELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLL 262 (411)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHhCHHHHHHH
Confidence 35566666777778777777777777777899875543
No 161
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=22.75 E-value=1.3e+02 Score=22.51 Aligned_cols=46 Identities=26% Similarity=0.321 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 040572 77 TARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREP 128 (142)
Q Consensus 77 aArEtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~ 128 (142)
..+..++.+--.| +-+|+.+.|+-++ +.+++++.+..+|.+|+.+-
T Consensus 7 ~~~~~iEAlLf~~---~~pvs~~~La~~~---~~~~~~~~v~~~l~~L~~~y 52 (162)
T 1t6s_A 7 QLLRSLEALIFSS---EEPVNLQTLSQIT---AHKFTPSELQEAVDELNRDY 52 (162)
T ss_dssp HHHHHHHHHHHHC---SSCBCHHHHHHHT---TCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCCHHHHHHHh---CcCCCHHHHHHHHHHHHHHh
Confidence 3334444443333 6688888887654 44589999999999998754
No 162
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=22.69 E-value=76 Score=20.83 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 040572 80 ESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 80 EtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a 130 (142)
.-+++|.-+..=-+--++++.|.-.|-=-+..++..+|...|..||+....
T Consensus 38 ~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 88 (110)
T 2pmu_A 38 TEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 88 (110)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhcc
Confidence 445666666655566799998866553223346778999999999997754
No 163
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=22.59 E-value=55 Score=25.23 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 040572 84 LAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAV 120 (142)
Q Consensus 84 iL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~V 120 (142)
++..+..++-.|.|-.+-.++..|....-||+.++.+
T Consensus 223 l~~~~~~l~~AG~eTTa~~l~~~l~~L~~~P~~~~~l 259 (394)
T 2wiy_A 223 AIATILVFYAVGHMAIGYLIASGIELFARRPEVFTAF 259 (394)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHCHHHHHHH
Confidence 4555666777777777666666666666688766543
No 164
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=22.59 E-value=30 Score=26.48 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 040572 84 LAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAV 120 (142)
Q Consensus 84 iL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~V 120 (142)
++..+..++-.|.|-.+-.++..|....-||+.++.+
T Consensus 220 i~~~~~~l~~AG~eTt~~~l~~~l~~L~~~P~~~~~l 256 (398)
T 2xkr_A 220 LVMETLLILIGGDETTRHTLSGGTEQLLRNRDQWDLL 256 (398)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 4555556666677666666666666666688876544
No 165
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.54 E-value=1.1e+02 Score=19.60 Aligned_cols=22 Identities=55% Similarity=0.626 Sum_probs=16.8
Q ss_pred HHHHHhCCCCHHHHHHHHHHHH
Q 040572 104 LIALCDLGVNPEALAAVVKELQ 125 (142)
Q Consensus 104 CI~LcE~GVNPEALA~VIKELR 125 (142)
+-+|-..|..||.||++-.||.
T Consensus 9 lqalkkegfspeelaaleselq 30 (48)
T 1g6u_A 9 LQALKKEGFSPEELAALESELQ 30 (48)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHH
Confidence 4567778999999888877664
No 166
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase; 2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A 1ka4_A
Probab=22.46 E-value=1.4e+02 Score=26.14 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 78 ARESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 78 ArEtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
=++.+++--++++++ |-+.+--..++.+-|.|++-+.|..+.-+||..
T Consensus 135 L~~vv~l~re~A~~~--~~~~~~YDaLLd~yEpg~t~~~ld~iF~~Lk~~ 182 (499)
T 1ka2_A 135 LDKIISLAKRAAEYL--GYEEEPYDALLDLYEEGLRTRDVEKMFEVLEKK 182 (499)
T ss_dssp HHHHHHHHHHHHHHH--CCSSCHHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CcCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 357899999999999 333356899999999999999988887777654
No 167
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.42 E-value=2e+02 Score=20.33 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCC
Q 040572 79 RESLDLAFHMSNILDTGLDRHTLSVLIALCDLGV 112 (142)
Q Consensus 79 rEtLDiL~EIS~LLNTGLDReTLsICI~LcE~GV 112 (142)
.+.++.|..|-.|-+.|++=+.+.-++.+++.|-
T Consensus 43 ~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~ 76 (142)
T 3gp4_A 43 AEDLRWILFTRQMRRAGLSIEALIDYLALFREGE 76 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 3677888889999999999999999999998875
No 168
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=22.38 E-value=59 Score=25.18 Aligned_cols=41 Identities=32% Similarity=0.144 Sum_probs=30.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 87 HMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 87 EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
++..++-.|.|-.+-.++..|....-||+.++.+-.||..-
T Consensus 266 ~~~~~l~ag~~tt~~~l~~~l~~L~~~P~~~~kl~~Ei~~v 306 (498)
T 3b6h_A 266 ALVLQLWATQGNMGPAAFWLLLFLLKNPEALAAVRGELESI 306 (498)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhchHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 44444446777677777777777778999999999998753
No 169
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine phosphatase, lymphoid phosphatase, PEP, LYP, struct genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A 2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Probab=22.23 E-value=67 Score=25.43 Aligned_cols=53 Identities=17% Similarity=0.363 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHH---------hc--CCCCHH----HHHHHHHHHhCCCCHH--HHHHHHHHHHhCCCC
Q 040572 78 ARESLDLAFHMSNI---------LD--TGLDRH----TLSVLIALCDLGVNPE--ALAAVVKELQREPSP 130 (142)
Q Consensus 78 ArEtLDiL~EIS~L---------LN--TGLDRe----TLsICI~LcE~GVNPE--ALA~VIKELRrE~~a 130 (142)
....++++..+-.. +. .|+.|. ++.+|+.|++.|..++ .+..+|+.||+....
T Consensus 202 ~~~~l~~i~~v~~~~~~~~~PivVHCsaGvGRTGtfiaid~~~~~l~~~~~~~~~dv~~~v~~lR~qR~~ 271 (309)
T 2p6x_A 202 IDPILELIWDVRCYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPS 271 (309)
T ss_dssp GHHHHHHHHHHHHHCCSCSSCEEEECSSSSSHHHHHHHHHHHHHHHHTTCCCTTCCHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEeCCCCcHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHhCcc
Confidence 45677777776553 33 389987 5666778899985332 367889999987643
No 170
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=22.21 E-value=25 Score=26.76 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHH
Q 040572 84 LAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVV 121 (142)
Q Consensus 84 iL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VI 121 (142)
++..+..++-.|.|-.+-.++..|....-||+.++.+.
T Consensus 224 l~~~~~~l~~AG~dTta~~l~~~l~~L~~~P~~~~~l~ 261 (396)
T 3oft_A 224 ARRMCRNLLFGGLDTVAAMIGMVALHLARHPEDQRLLR 261 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 44455556666666666666666666667888765443
No 171
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=22.20 E-value=1.1e+02 Score=22.07 Aligned_cols=50 Identities=10% Similarity=0.046 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 040572 81 SLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 81 tLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a 130 (142)
-+++|.-+.+=-+.+++++.+.--+-.-+.+++...+..-|+.||+....
T Consensus 187 E~evL~ll~~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~ 236 (249)
T 3q9s_A 187 EFDILALLIRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRD 236 (249)
T ss_dssp HHHHHHHHHHSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhc
Confidence 35666666666666799998887776667889999999999999987665
No 172
>1no1_A G39P, replisome organizer, gene 39; helical, bipartite, natively unfolded domain, replication; 2.40A {Bacillus phage SPP1} SCOP: a.179.1.1
Probab=21.89 E-value=2.4e+02 Score=20.68 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHh-c-CCCC--HHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 040572 79 RESLDLAFHMSNIL-D-TGLD--RHTLSVLIALCDLGVNPEALAAVVKELQR 126 (142)
Q Consensus 79 rEtLDiL~EIS~LL-N-TGLD--ReTLsICI~LcE~GVNPEALA~VIKELRr 126 (142)
+|++.+|.-|...- | -+.| ++++.+-..||..+---.+..+|.+.++.
T Consensus 4 ~E~~~lL~lI~~aYP~~f~~d~~~~~ve~W~~lL~d~~ye~v~~Al~~hI~~ 55 (126)
T 1no1_A 4 KDVVQILKAVSEFYPGRFQPDDLKGTVKAWHRVLAEYELEEIMNNLTDYAKV 55 (126)
T ss_dssp HHHHHHHHHHHHHSTTTCCCTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHhcCccchHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 57889999999999 7 6889 99999999999965544555566667765
No 173
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=21.70 E-value=91 Score=22.27 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCC--CCCCCCCCCC
Q 040572 110 LGVNPEALAAVVKELQREPSP--SPPMSTAPSS 140 (142)
Q Consensus 110 ~GVNPEALA~VIKELRrE~~a--~~~~~~~p~~ 140 (142)
.|++|+.+...++++..+... -.+.+..|||
T Consensus 120 ~g~~~~~fl~~L~~~l~~~~~~~~~~~~~~~~~ 152 (153)
T 2dlx_A 120 HQLDVSSFLDQVTGFLGEHGQLDGLSSSSGPSS 152 (153)
T ss_dssp SSCCHHHHHHHHHHHHHHTCSCSSCCCCCSCCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 469999999999888876665 2344566665
No 174
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=21.57 E-value=1.9e+02 Score=19.48 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 040572 80 ESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQR 126 (142)
Q Consensus 80 EtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRr 126 (142)
+..+++..+..-.+..++.+.+..+++.+ +=|+..|..++..+-.
T Consensus 178 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~--~g~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 178 EKLAALQRRAAMRGLQLPEDVGRFLLNRM--ARDLRTLFDVLDRLDK 222 (242)
T ss_dssp GHHHHHHHHHHHTTCCCCHHHHHHHHHHT--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--cCCHHHHHHHHHHHHH
Confidence 34455555555556789999999999987 3488888887776643
No 175
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=21.47 E-value=1.3e+02 Score=18.21 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 040572 111 GVNPEALAAVVKELQREP 128 (142)
Q Consensus 111 GVNPEALA~VIKELRrE~ 128 (142)
|+++-++...|+.|.+..
T Consensus 41 ~is~~tvs~~l~~L~~~g 58 (100)
T 1ub9_A 41 DLTPGNLDSHIRVLERNG 58 (100)
T ss_dssp TCCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 566666666666665543
No 176
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=21.39 E-value=1.8e+02 Score=20.73 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHH-------HH-----HHHHHHhCCC--CHHHHHHHHHHHH
Q 040572 74 AARTARESLDLAFHMSNILDTGLDRHT-------LS-----VLIALCDLGV--NPEALAAVVKELQ 125 (142)
Q Consensus 74 ~~~aArEtLDiL~EIS~LLNTGLDReT-------Ls-----ICI~LcE~GV--NPEALA~VIKELR 125 (142)
+...-..+++||.+ |..+||.+. |. +.-.|.++++ +++.|..|++-|.
T Consensus 55 k~~~i~KA~~Ii~~----L~~sLd~e~GgeiA~nL~~LY~y~~~~L~~An~~~d~~~l~ev~~ll~ 116 (131)
T 3iqc_A 55 KIYYINRVTDIFTE----LLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVAR 116 (131)
T ss_dssp HHHHHHHHHHHHHH----HHHTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHhcCCccccHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Confidence 33444455566654 677888774 33 2335666665 7888887766554
No 177
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=21.10 E-value=1.2e+02 Score=20.51 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 102 SVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 102 sICI~LcE~GVNPEALA~VIKELRrE 127 (142)
.++..+...|+.|+.+..++.++.++
T Consensus 98 ~~~~~~~~~g~~~~ei~~l~~~~~~~ 123 (125)
T 3neu_A 98 RFLEEAKSIGLDDQTAIELLIKRSRN 123 (125)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 44566777888888888888877654
No 178
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=21.04 E-value=55 Score=25.70 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAV 120 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~V 120 (142)
+++.++..++-.|.|-.+-.++..|....-||+.++.+
T Consensus 252 ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l 289 (436)
T 2cd8_A 252 ELLGMAHILLVAGHETTVNLIANGMYALLSHPDQLAAL 289 (436)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 46666777777888877777777777777889876543
No 179
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*
Probab=21.00 E-value=81 Score=24.81 Aligned_cols=29 Identities=21% Similarity=0.412 Sum_probs=23.9
Q ss_pred HHhcC--CCCHHHHHHHHHHHhCCCCHHHHH
Q 040572 90 NILDT--GLDRHTLSVLIALCDLGVNPEALA 118 (142)
Q Consensus 90 ~LLNT--GLDReTLsICI~LcE~GVNPEALA 118 (142)
-|+.| |-||.=+.+.+-|...||+.++..
T Consensus 176 vl~HC~aGkDRTG~~~alll~~~g~~~~~I~ 206 (296)
T 1ywf_A 176 VLTHCFAGKDRTGFVVALVLEAVGLDRDVIV 206 (296)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHTTCCHHHHH
T ss_pred EEEECCCCCccccHHHHHHHHHcCCCHHHHH
Confidence 34455 999999999999999999998754
No 180
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=20.98 E-value=58 Score=22.97 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhCCC
Q 040572 95 GLDRHTLSVLIALCDLGVNP-EALAAVVKELQREPS 129 (142)
Q Consensus 95 GLDReTLsICI~LcE~GVNP-EALA~VIKELRrE~~ 129 (142)
.++++.|+-. .|+++ |.|..++++|+++.-
T Consensus 169 ~~t~~~lA~~-----lG~sr~etvsR~l~~l~~~gl 199 (238)
T 2bgc_A 169 NLTMQELGYS-----SGIAHSSAVSRIISKLKQEKV 199 (238)
T ss_dssp CCCHHHHHHH-----TTCCCHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHH-----hCCChHHHHHHHHHHHHHCCC
Confidence 3455555432 58899 899999999998764
No 181
>3omd_A Uncharacterized protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, unknown function; HET: MSE; 1.50A {Leptospirillum rubarum}
Probab=20.86 E-value=32 Score=26.00 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=11.9
Q ss_pred cCCCCHHHHHHHHHHHhCCCCHHHHHHHH
Q 040572 93 DTGLDRHTLSVLIALCDLGVNPEALAAVV 121 (142)
Q Consensus 93 NTGLDReTLsICI~LcE~GVNPEALA~VI 121 (142)
+||+|+..|..+ ||+|++|.++|
T Consensus 47 ~~~~D~~~l~fl------gI~~~~~~~~V 69 (145)
T 3omd_A 47 NCPLDQAFFSFF------GLDHEKFAEAV 69 (145)
T ss_dssp TSHHHHHHHHHH------TCCHHHHHHHH
T ss_pred CChHHHHHHHHh------CCCHHHHHHHH
Confidence 455555544432 55555555554
No 182
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=20.82 E-value=51 Score=25.82 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAV 120 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~V 120 (142)
+++..+..++-.|.|-.+-.++..|....-||+.++.+
T Consensus 243 el~~~~~~l~~AG~dTt~~~l~~~l~~L~~~P~~~~~l 280 (425)
T 2z3t_A 243 GIVGTCVHLLTAGHETTTNFLAKAVLTLRAHRDVLDEL 280 (425)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 45666667777777777777766666666688866543
No 183
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=20.72 E-value=74 Score=21.39 Aligned_cols=51 Identities=4% Similarity=0.085 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 040572 80 ESLDLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAVVKELQREPSP 130 (142)
Q Consensus 80 EtLDiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~VIKELRrE~~a 130 (142)
.-+++|.-+..=-+--++++.|.-.|-=-+..++..+|...|..||+....
T Consensus 45 ~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 45 AEYEILSLLISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp HHHHHHHHHHHHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 345666666655566799998765552223346889999999999997643
No 184
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=20.72 E-value=1.8e+02 Score=19.36 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=45.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCC---CH----HHHHHHHHHH-hCCCCHHHHHHHHHHHHhC
Q 040572 67 VDDMDPEAARTARESLDLAFHMSNILDTGL---DR----HTLSVLIALC-DLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 67 ~~~md~d~~~aArEtLDiL~EIS~LLNTGL---DR----eTLsICI~Lc-E~GVNPEALA~VIKELRrE 127 (142)
+|..|.+-+.--.+-+++..+|+.+=..|+ |. +-|.-+.++. +.|++|+.+..+.++|-.+
T Consensus 17 ID~iD~~il~LL~~R~~~~~~i~~~K~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~~ 85 (101)
T 3ret_A 17 IDRIDLDIVQALGRRMDYVKAASRFEASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHW 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGCSSGGGTTCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHH
Confidence 677788888888888888888888765453 33 4455566664 5789999999998887553
No 185
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=20.50 E-value=16 Score=22.78 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=13.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHhC
Q 040572 106 ALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 106 ~LcE~GVNPEALA~VIKELRrE 127 (142)
.|.+.|++.-....++..|+++
T Consensus 46 ~~~~lG~DSl~~~~l~~~l~~~ 67 (99)
T 2liu_A 46 KFVDLGLDSIVGVEWTTTINQT 67 (99)
T ss_dssp CHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHhCccHHHHHHHHHHHHHH
Confidence 4455666666666666666554
No 186
>1aor_A Aldehyde ferredoxin oxidoreductase; HET: PTE; 2.30A {Pyrococcus furiosus} SCOP: a.110.1.1 d.152.1.1
Probab=20.47 E-value=1.7e+02 Score=25.95 Aligned_cols=44 Identities=27% Similarity=0.426 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcC-CCCH----HHHHHHHHHHhCCC---------------CHHHHHHHHHHHH
Q 040572 82 LDLAFHMSNILDT-GLDR----HTLSVLIALCDLGV---------------NPEALAAVVKELQ 125 (142)
Q Consensus 82 LDiL~EIS~LLNT-GLDR----eTLsICI~LcE~GV---------------NPEALA~VIKELR 125 (142)
+|.+..+..|.|- |||- .+++..++|.|.|+ |++++..+|.+|=
T Consensus 327 l~~i~~~~~lcd~~GlDtIs~G~~ia~amE~~e~G~l~~ee~~~~~~l~~Gd~~~~~~ll~~ia 390 (605)
T 1aor_A 327 LASIIEANHMCDELGLDTISTGGTLATAMELYEKGHIKDEELGDAPPFRWGNTEVLHYYIEKIA 390 (605)
T ss_dssp HHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSCHHHHTTSCCCCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHCCCCCHHHcCcccCCCCCCHHHHHHHHHHHH
Confidence 3556666666666 9994 67888999999884 5677777777764
No 187
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=20.43 E-value=36 Score=26.89 Aligned_cols=37 Identities=24% Similarity=0.122 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 040572 84 LAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAV 120 (142)
Q Consensus 84 iL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~V 120 (142)
++..+..++-.|.|-.+-.++..|....-||+.++.+
T Consensus 279 i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~~~~l 315 (450)
T 3tkt_A 279 TAGYYIITASAGHDTTSASSAGAALALARDPDLFARV 315 (450)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4444555555666666666666666666688876644
No 188
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=20.30 E-value=2.3e+02 Score=19.74 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=46.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhc-CC---CCH----HHHHHHHHHH-hCCCCHHHHHHHHHHHHhC
Q 040572 67 VDDMDPEAARTARESLDLAFHMSNILD-TG---LDR----HTLSVLIALC-DLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 67 ~~~md~d~~~aArEtLDiL~EIS~LLN-TG---LDR----eTLsICI~Lc-E~GVNPEALA~VIKELRrE 127 (142)
+|..|.+-+.--.+-+++..+|+.+=. .| +|. +-|.-+.++. +.|++|+.+..+.+.|-.+
T Consensus 21 ID~ID~~il~LL~~R~~~~~~I~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~Ii~~ 90 (114)
T 3rmi_A 21 IDNFDITLIHILAERFRCTQAIGRLKARYNLPAVDPLREQYQIKRLRKLAIDTHFDPDFAEKFLKFIIKE 90 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 677888888888888889889888753 35 343 4566677776 8899999999998887654
No 189
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=20.15 E-value=98 Score=22.29 Aligned_cols=40 Identities=28% Similarity=0.267 Sum_probs=26.9
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 040572 86 FHMSNILDTG-LDRHTLSVLIALCDLGVNPEALAAVVKELQRE 127 (142)
Q Consensus 86 ~EIS~LLNTG-LDReTLsICI~LcE~GVNPEALA~VIKELRrE 127 (142)
.-+..|.+.| || +++.-+.+|-+. .||+-+..+|.....+
T Consensus 12 ~~~~~l~~~g~LD-~~f~qL~~L~~~-~~~~~~~ell~~Fl~d 52 (153)
T 3us6_A 12 DYIKSMFMEGFLD-GQFLQLQQLQDE-NNPEFVFEVVSLFFDD 52 (153)
T ss_dssp HHHHHHHHTTSCC-HHHHHHHHTCBT-TBTTHHHHHHHHHHHH
T ss_pred HHHHhcccccchH-HHHHHHHHhhcC-CCHHHHHHHHHHHHHH
Confidence 3445677887 67 888887777554 4788777777655443
No 190
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=20.08 E-value=1.7e+02 Score=18.25 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Q 040572 86 FHMSNILDTGLDRHTLSVLIALCDL--GVNPEALAAVVKELQ 125 (142)
Q Consensus 86 ~EIS~LLNTGLDReTLsICI~LcE~--GVNPEALA~VIKELR 125 (142)
.+|+.. +|+++.|++-+++=-.. +|+++....|.+-++
T Consensus 4 ~diA~~--aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~ 43 (65)
T 1uxc_A 4 DEIARL--AGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVR 43 (65)
T ss_dssp HHHHHH--HTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHH
T ss_pred HHHHHH--HCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 455554 38889998888763221 688876655555443
No 191
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=20.04 E-value=50 Score=25.76 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 040572 83 DLAFHMSNILDTGLDRHTLSVLIALCDLGVNPEALAAV 120 (142)
Q Consensus 83 DiL~EIS~LLNTGLDReTLsICI~LcE~GVNPEALA~V 120 (142)
+++..+..++-.|.|-.+-.++..|....-||+.++.+
T Consensus 234 ei~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~~~~l 271 (413)
T 2z36_A 234 GLVSLAFLLLTAGHETTANMISLGVVGLLSHPEQLTVV 271 (413)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 45666667777777777777777777777789875543
Done!