BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040576
         (641 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
          Length = 482

 Score = 33.9 bits (76), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 373 IHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQ 432
           IH Y++  ++K    L T L +   K     L  N  D      V S +++   Y + G+
Sbjct: 397 IHHYLEALKVKDRSPLRTKLTSALKKLSTKRLCHNALD------VQSLSALGFVYKLEGE 450

Query: 433 GEKALEMFMEMEKRGPTPNDATFICVL 459
             +A E + + +K    P +A F+  L
Sbjct: 451 KRQAAEYYEKAQK--IDPENAEFLTAL 475


>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
           Ifit5
 pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
           5`-triphosphate Oligocytidine
 pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
           5`-triphosphate Oligouridine
 pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
           5`-triphosphate Oligoadenine
 pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
          Length = 482

 Score = 33.5 bits (75), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 373 IHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQ 432
           IH Y++  ++K    L T L +   K     L  N  D      V S +++   Y + G+
Sbjct: 397 IHHYLEALKVKDRSPLRTKLTSALKKLSTKRLCHNALD------VQSLSALGFVYKLEGE 450

Query: 433 GEKALEMFMEMEKRGPTPNDATFICVL 459
             +A E + + +K    P +A F+  L
Sbjct: 451 KRQAAEYYEKAQK--IDPENAEFLTAL 475


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,834,784
Number of Sequences: 62578
Number of extensions: 774111
Number of successful extensions: 1701
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1699
Number of HSP's gapped (non-prelim): 5
length of query: 641
length of database: 14,973,337
effective HSP length: 105
effective length of query: 536
effective length of database: 8,402,647
effective search space: 4503818792
effective search space used: 4503818792
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)