Query 040576
Match_columns 641
No_of_seqs 664 out of 4267
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 09:45:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.4E-85 3.1E-90 733.0 66.4 553 72-632 205-769 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.3E-77 5E-82 651.4 59.4 511 117-632 83-606 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.8E-76 6E-81 658.4 58.7 553 71-633 103-710 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2E-64 4.3E-69 551.4 59.9 537 84-638 365-959 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.4E-63 7.4E-68 541.7 57.6 489 57-550 373-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.2E-61 7E-66 524.8 51.6 425 57-486 126-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-31 2.2E-36 307.1 60.9 501 99-635 372-892 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-31 1.3E-35 300.8 60.7 557 66-634 273-857 (899)
9 PRK11447 cellulose synthase su 100.0 1.9E-23 4E-28 239.6 56.4 512 61-583 35-666 (1157)
10 PRK11447 cellulose synthase su 99.9 4.1E-23 8.8E-28 236.8 54.1 512 61-583 119-700 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 2.7E-22 6E-27 194.7 35.9 434 128-572 55-508 (966)
12 PRK09782 bacteriophage N4 rece 99.9 6.5E-20 1.4E-24 200.9 59.1 524 65-632 55-729 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1E-20 2.3E-25 207.1 51.2 492 101-634 55-697 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 6.7E-23 1.5E-27 198.9 29.5 409 163-580 54-482 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-19 3.9E-24 194.3 43.6 416 160-583 130-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 1.2E-19 2.7E-24 185.8 31.9 314 292-613 42-376 (389)
17 PRK10049 pgaA outer membrane p 99.9 1.2E-17 2.5E-22 183.5 43.4 393 159-581 17-454 (765)
18 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-17 4.6E-22 178.3 43.5 436 124-580 130-594 (615)
19 PRK11788 tetratricopeptide rep 99.8 1E-18 2.2E-23 179.0 29.4 278 170-450 48-351 (389)
20 PRK15174 Vi polysaccharide exp 99.8 1.9E-17 4E-22 178.0 39.4 323 226-554 45-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 7.8E-17 1.7E-21 177.0 44.4 406 124-555 18-462 (765)
22 PRK15174 Vi polysaccharide exp 99.8 4.5E-17 9.8E-22 175.0 40.0 324 255-586 43-384 (656)
23 KOG2002 TPR-containing nuclear 99.8 6E-16 1.3E-20 159.1 42.7 508 69-585 179-747 (1018)
24 PRK14574 hmsH outer membrane p 99.8 2.7E-15 5.7E-20 161.6 47.0 189 392-580 298-510 (822)
25 KOG2002 TPR-containing nuclear 99.8 4E-15 8.8E-20 153.1 43.9 518 106-636 146-738 (1018)
26 KOG4422 Uncharacterized conser 99.8 2.3E-14 5.1E-19 134.3 40.5 418 55-514 117-587 (625)
27 PRK14574 hmsH outer membrane p 99.8 2.2E-14 4.7E-19 154.7 44.8 432 100-556 44-520 (822)
28 KOG2076 RNA polymerase III tra 99.7 1.7E-12 3.7E-17 133.2 44.1 519 100-627 150-787 (895)
29 KOG0495 HAT repeat protein [RN 99.7 5E-12 1.1E-16 124.9 45.1 437 135-581 420-878 (913)
30 KOG2003 TPR repeat-containing 99.7 4.1E-14 8.8E-19 133.4 28.9 418 159-580 200-686 (840)
31 KOG2003 TPR repeat-containing 99.7 2.4E-14 5.3E-19 134.9 25.7 435 129-569 209-709 (840)
32 KOG4422 Uncharacterized conser 99.7 3E-12 6.6E-17 120.3 37.7 416 121-586 116-593 (625)
33 KOG0495 HAT repeat protein [RN 99.6 1.5E-11 3.2E-16 121.7 41.1 454 100-563 416-894 (913)
34 KOG1126 DNA-binding cell divis 99.6 4.1E-14 8.9E-19 140.6 22.3 158 416-580 420-583 (638)
35 PF13429 TPR_15: Tetratricopep 99.6 1.1E-15 2.3E-20 148.2 11.0 256 321-581 13-275 (280)
36 KOG2076 RNA polymerase III tra 99.6 1.3E-12 2.8E-17 134.1 32.9 348 235-594 151-523 (895)
37 KOG1155 Anaphase-promoting com 99.6 8.3E-12 1.8E-16 118.8 33.7 362 232-627 173-554 (559)
38 KOG1173 Anaphase-promoting com 99.6 1.5E-11 3.2E-16 120.1 36.0 279 317-627 245-536 (611)
39 PRK10747 putative protoheme IX 99.6 1.4E-12 2.9E-17 132.4 28.0 273 298-580 97-387 (398)
40 KOG0547 Translocase of outer m 99.6 1.6E-11 3.4E-16 117.7 31.8 215 361-581 336-564 (606)
41 PF13429 TPR_15: Tetratricopep 99.6 1.7E-14 3.7E-19 139.9 11.9 251 356-635 13-269 (280)
42 TIGR00540 hemY_coli hemY prote 99.6 2.6E-12 5.6E-17 131.2 28.3 279 327-633 95-389 (409)
43 KOG0547 Translocase of outer m 99.6 5.6E-12 1.2E-16 120.6 28.0 211 395-635 335-558 (606)
44 PRK10747 putative protoheme IX 99.5 1.1E-11 2.4E-16 125.8 30.7 278 266-550 96-391 (398)
45 KOG1126 DNA-binding cell divis 99.5 1.7E-12 3.8E-17 129.2 22.8 273 300-582 334-619 (638)
46 KOG1915 Cell cycle control pro 99.5 7.3E-10 1.6E-14 105.9 39.1 472 102-581 85-623 (677)
47 KOG1155 Anaphase-promoting com 99.5 1.9E-11 4.1E-16 116.4 28.5 253 324-580 235-492 (559)
48 KOG4318 Bicoid mRNA stability 99.5 1.6E-10 3.6E-15 118.4 32.9 105 489-594 492-604 (1088)
49 TIGR00540 hemY_coli hemY prote 99.5 1.2E-10 2.5E-15 119.1 32.4 222 323-547 160-397 (409)
50 KOG1915 Cell cycle control pro 99.5 1.5E-09 3.3E-14 103.8 36.9 184 160-344 76-272 (677)
51 KOG2047 mRNA splicing factor [ 99.5 1.2E-08 2.5E-13 101.5 42.4 153 91-249 104-274 (835)
52 COG2956 Predicted N-acetylgluc 99.5 8.9E-11 1.9E-15 106.9 25.4 260 236-529 48-324 (389)
53 COG3071 HemY Uncharacterized e 99.4 2.2E-10 4.8E-15 107.7 27.6 247 329-580 97-354 (400)
54 KOG2376 Signal recognition par 99.4 3.7E-09 8E-14 104.2 35.3 437 128-580 19-517 (652)
55 TIGR02521 type_IV_pilW type IV 99.4 8.3E-11 1.8E-15 111.0 23.5 197 385-582 30-231 (234)
56 KOG2047 mRNA splicing factor [ 99.4 1.1E-07 2.3E-12 94.8 44.0 496 73-577 121-717 (835)
57 COG2956 Predicted N-acetylgluc 99.4 4.5E-10 9.7E-15 102.4 25.3 290 298-590 48-354 (389)
58 COG3071 HemY Uncharacterized e 99.4 3.9E-09 8.4E-14 99.5 30.8 279 236-548 97-389 (400)
59 KOG1173 Anaphase-promoting com 99.4 2.2E-09 4.7E-14 105.3 29.8 277 284-564 243-533 (611)
60 KOG1129 TPR repeat-containing 99.3 1.9E-10 4.1E-15 104.7 17.5 231 320-585 227-460 (478)
61 KOG1174 Anaphase-promoting com 99.3 7.1E-08 1.5E-12 91.1 34.6 284 312-629 228-520 (564)
62 TIGR02521 type_IV_pilW type IV 99.3 7.8E-10 1.7E-14 104.3 22.7 188 416-632 30-221 (234)
63 KOG4162 Predicted calmodulin-b 99.3 3.3E-08 7.1E-13 100.7 34.5 388 186-583 317-783 (799)
64 PRK12370 invasion protein regu 99.3 1.7E-09 3.7E-14 114.9 26.9 245 331-584 276-536 (553)
65 KOG4318 Bicoid mRNA stability 99.3 3.6E-09 7.8E-14 108.8 27.4 227 147-392 15-245 (1088)
66 KOG1840 Kinesin light chain [C 99.3 1.1E-09 2.3E-14 110.8 23.0 191 391-581 246-477 (508)
67 PRK11189 lipoprotein NlpI; Pro 99.2 1.5E-09 3.3E-14 105.4 22.2 188 387-581 65-263 (296)
68 PF13041 PPR_2: PPR repeat fam 99.2 3.7E-11 8.1E-16 81.4 6.5 50 314-363 1-50 (50)
69 KOG3785 Uncharacterized conser 99.2 1.6E-07 3.4E-12 87.0 31.6 404 129-552 65-493 (557)
70 KOG0548 Molecular co-chaperone 99.2 2.9E-08 6.2E-13 97.2 28.2 233 354-626 227-472 (539)
71 PF13041 PPR_2: PPR repeat fam 99.2 5.5E-11 1.2E-15 80.6 6.6 50 415-464 1-50 (50)
72 PRK12370 invasion protein regu 99.2 4.9E-09 1.1E-13 111.4 24.9 212 365-583 275-502 (553)
73 KOG4162 Predicted calmodulin-b 99.2 1.6E-06 3.5E-11 88.7 40.5 401 147-554 313-788 (799)
74 KOG3616 Selective LIM binding 99.2 2.2E-07 4.7E-12 93.8 33.1 184 327-542 743-930 (1636)
75 KOG1840 Kinesin light chain [C 99.2 6.8E-09 1.5E-13 105.0 22.6 162 387-548 284-478 (508)
76 KOG0624 dsRNA-activated protei 99.2 9E-08 2E-12 88.2 27.4 312 226-580 41-367 (504)
77 KOG1156 N-terminal acetyltrans 99.2 8.7E-07 1.9E-11 88.8 36.4 114 133-249 53-169 (700)
78 COG3063 PilF Tfp pilus assembl 99.1 5.2E-09 1.1E-13 91.3 18.0 162 419-585 37-204 (250)
79 KOG3785 Uncharacterized conser 99.1 7.9E-07 1.7E-11 82.5 33.0 441 128-587 29-494 (557)
80 KOG0985 Vesicle coat protein c 99.1 4.4E-06 9.4E-11 87.7 41.7 144 416-580 1103-1246(1666)
81 KOG1174 Anaphase-promoting com 99.1 4E-07 8.7E-12 86.1 31.2 189 363-556 312-507 (564)
82 PRK11189 lipoprotein NlpI; Pro 99.1 6.9E-08 1.5E-12 93.8 26.2 229 330-566 40-283 (296)
83 PF12569 NARP1: NMDA receptor- 99.1 2.1E-06 4.6E-11 88.3 37.1 411 129-579 12-516 (517)
84 KOG2376 Signal recognition par 99.1 1.3E-06 2.8E-11 86.7 33.5 430 99-546 21-517 (652)
85 COG3063 PilF Tfp pilus assembl 99.1 6.8E-08 1.5E-12 84.5 21.7 195 356-554 40-241 (250)
86 KOG3616 Selective LIM binding 99.1 3.1E-06 6.7E-11 85.8 36.0 356 196-586 619-1027(1636)
87 KOG1156 N-terminal acetyltrans 99.1 2.5E-06 5.4E-11 85.7 34.9 377 202-585 51-470 (700)
88 KOG1125 TPR repeat-containing 99.1 1.6E-08 3.5E-13 99.8 19.1 215 362-582 296-526 (579)
89 PF04733 Coatomer_E: Coatomer 99.0 1.2E-08 2.7E-13 97.4 17.6 145 427-580 112-262 (290)
90 KOG1129 TPR repeat-containing 99.0 1.3E-08 2.9E-13 92.9 16.7 221 289-514 227-455 (478)
91 KOG1127 TPR repeat-containing 99.0 1.3E-06 2.8E-11 91.6 32.2 177 72-249 474-656 (1238)
92 KOG3617 WD40 and TPR repeat-co 99.0 8.7E-06 1.9E-10 83.7 36.3 236 87-342 724-993 (1416)
93 PF12569 NARP1: NMDA receptor- 99.0 6.5E-07 1.4E-11 92.1 29.0 124 454-580 196-331 (517)
94 KOG4340 Uncharacterized conser 99.0 9E-07 1.9E-11 80.2 25.6 414 151-583 4-443 (459)
95 PRK15359 type III secretion sy 99.0 4.2E-08 9.2E-13 83.7 15.7 125 473-628 14-140 (144)
96 cd05804 StaR_like StaR_like; a 98.9 2.8E-06 6.1E-11 85.8 31.8 294 286-583 7-336 (355)
97 KOG0548 Molecular co-chaperone 98.9 6.2E-06 1.3E-10 81.3 30.0 410 128-567 9-473 (539)
98 KOG3617 WD40 and TPR repeat-co 98.9 5.8E-06 1.3E-10 85.0 30.7 409 116-580 721-1171(1416)
99 PRK10370 formate-dependent nit 98.9 3.1E-07 6.7E-12 83.0 19.6 160 424-623 23-187 (198)
100 PRK04841 transcriptional regul 98.9 1.4E-05 3.1E-10 91.6 37.8 356 229-584 347-761 (903)
101 KOG0624 dsRNA-activated protei 98.9 4.6E-06 9.9E-11 77.3 25.7 210 191-415 37-252 (504)
102 KOG0985 Vesicle coat protein c 98.8 1.4E-05 3E-10 84.0 31.8 223 316-567 1104-1326(1666)
103 PF04733 Coatomer_E: Coatomer 98.8 1.5E-07 3.3E-12 90.0 16.2 246 297-554 13-270 (290)
104 KOG1127 TPR repeat-containing 98.8 3.4E-06 7.4E-11 88.6 25.3 423 194-635 494-988 (1238)
105 TIGR03302 OM_YfiO outer membra 98.7 1.2E-06 2.7E-11 82.5 19.3 181 385-583 32-232 (235)
106 KOG4340 Uncharacterized conser 98.7 1.8E-05 4E-10 72.0 24.4 285 123-414 12-338 (459)
107 cd05804 StaR_like StaR_like; a 98.7 2.7E-05 5.8E-10 78.7 29.3 251 295-550 53-337 (355)
108 COG5010 TadD Flp pilus assembl 98.7 2.4E-06 5.2E-11 76.7 17.8 122 457-580 71-194 (257)
109 PRK15359 type III secretion sy 98.6 2E-06 4.4E-11 73.4 15.5 122 437-565 13-137 (144)
110 PLN02789 farnesyltranstransfer 98.6 9.2E-06 2E-10 78.9 21.7 211 366-580 52-299 (320)
111 TIGR02552 LcrH_SycD type III s 98.6 1.2E-06 2.7E-11 74.4 14.0 104 474-580 5-111 (135)
112 KOG1070 rRNA processing protei 98.6 5.9E-06 1.3E-10 89.8 21.4 200 383-586 1455-1666(1710)
113 PRK04841 transcriptional regul 98.6 9.8E-05 2.1E-09 84.7 33.4 323 261-583 348-720 (903)
114 PLN02789 farnesyltranstransfer 98.6 1.5E-05 3.2E-10 77.5 22.5 188 391-581 42-248 (320)
115 KOG1128 Uncharacterized conser 98.6 3E-06 6.5E-11 86.4 17.5 188 382-584 394-583 (777)
116 PF12854 PPR_1: PPR repeat 98.6 9.6E-08 2.1E-12 57.9 4.2 32 187-218 2-33 (34)
117 KOG1125 TPR repeat-containing 98.6 5.2E-06 1.1E-10 82.5 18.4 139 434-575 411-563 (579)
118 PRK15363 pathogenicity island 98.5 1.7E-06 3.8E-11 72.4 12.4 96 488-583 35-132 (157)
119 KOG1128 Uncharacterized conser 98.5 1.6E-05 3.5E-10 81.2 21.4 210 287-514 400-613 (777)
120 PF12854 PPR_1: PPR repeat 98.5 2.2E-07 4.9E-12 56.3 4.5 33 381-413 2-34 (34)
121 KOG1914 mRNA cleavage and poly 98.5 0.0021 4.4E-08 64.0 33.7 145 367-514 347-498 (656)
122 COG5010 TadD Flp pilus assembl 98.5 2.5E-05 5.3E-10 70.4 18.4 156 421-579 70-227 (257)
123 PRK15179 Vi polysaccharide bio 98.5 4.6E-05 9.9E-10 81.8 23.9 131 449-582 83-216 (694)
124 PRK10370 formate-dependent nit 98.5 2.4E-05 5.1E-10 70.8 18.7 155 393-559 23-183 (198)
125 PRK15179 Vi polysaccharide bio 98.5 6.6E-06 1.4E-10 88.1 17.3 127 484-636 82-210 (694)
126 TIGR03302 OM_YfiO outer membra 98.5 1.9E-05 4.2E-10 74.3 18.8 181 349-551 31-234 (235)
127 KOG0553 TPR repeat-containing 98.4 1.4E-06 2.9E-11 79.8 10.0 110 496-631 89-200 (304)
128 COG4783 Putative Zn-dependent 98.4 0.0002 4.4E-09 70.3 25.2 116 463-580 317-434 (484)
129 KOG1070 rRNA processing protei 98.4 8.1E-05 1.8E-09 81.4 24.1 230 315-548 1457-1699(1710)
130 KOG3081 Vesicle coat complex C 98.4 6.1E-05 1.3E-09 67.8 18.9 242 323-580 15-268 (299)
131 PRK14720 transcript cleavage f 98.4 9.6E-05 2.1E-09 80.1 24.1 147 388-565 118-268 (906)
132 KOG3081 Vesicle coat complex C 98.4 0.00034 7.3E-09 63.2 22.7 246 298-554 21-276 (299)
133 KOG3060 Uncharacterized conser 98.3 0.00011 2.4E-09 65.7 18.8 179 398-580 24-217 (289)
134 KOG2053 Mitochondrial inherita 98.3 0.0079 1.7E-07 63.7 36.2 67 522-588 438-507 (932)
135 PLN03088 SGT1, suppressor of 98.3 9.5E-06 2.1E-10 80.8 13.6 110 495-630 9-120 (356)
136 COG4783 Putative Zn-dependent 98.3 0.00015 3.3E-09 71.2 20.8 142 420-583 309-454 (484)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.7E-05 5.8E-10 77.2 14.7 121 456-581 173-295 (395)
138 KOG3060 Uncharacterized conser 98.2 9.3E-05 2E-09 66.1 16.2 196 362-560 23-231 (289)
139 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.7E-05 3.6E-10 65.6 11.4 91 490-580 4-102 (119)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.7E-05 1.4E-09 74.4 16.4 128 386-517 169-297 (395)
141 PF14559 TPR_19: Tetratricopep 98.2 3.1E-06 6.8E-11 61.8 5.4 67 531-623 2-68 (68)
142 PRK14720 transcript cleavage f 98.2 0.00067 1.4E-08 73.8 24.1 219 314-583 29-252 (906)
143 TIGR02552 LcrH_SycD type III s 98.1 9.7E-05 2.1E-09 62.6 14.2 113 439-555 5-120 (135)
144 PF09976 TPR_21: Tetratricopep 98.1 0.00014 3E-09 62.4 14.3 115 465-580 24-144 (145)
145 PF13432 TPR_16: Tetratricopep 98.1 8.7E-06 1.9E-10 58.7 5.3 58 526-583 3-60 (65)
146 TIGR00756 PPR pentatricopeptid 98.0 9.2E-06 2E-10 50.0 4.7 34 317-350 1-34 (35)
147 PF13414 TPR_11: TPR repeat; P 98.0 1.3E-05 2.8E-10 58.7 5.8 64 519-582 2-66 (69)
148 KOG0550 Molecular chaperone (D 98.0 0.00049 1.1E-08 66.0 17.4 159 418-582 169-349 (486)
149 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.3E-10 49.7 4.5 34 418-451 1-34 (35)
150 cd00189 TPR Tetratricopeptide 98.0 6.5E-05 1.4E-09 58.8 10.2 93 491-583 3-97 (100)
151 PF04840 Vps16_C: Vps16, C-ter 98.0 0.01 2.2E-07 57.7 26.7 106 392-514 183-288 (319)
152 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 3E-10 48.9 4.5 33 317-349 2-34 (34)
153 PF12895 Apc3: Anaphase-promot 98.0 1E-05 2.2E-10 61.9 4.3 78 501-579 2-83 (84)
154 PF13371 TPR_9: Tetratricopept 98.0 3.8E-05 8.2E-10 56.9 7.3 55 527-581 2-56 (73)
155 PF09976 TPR_21: Tetratricopep 97.9 0.00067 1.4E-08 58.2 15.8 126 419-546 14-144 (145)
156 KOG0553 TPR repeat-containing 97.9 0.00011 2.4E-09 67.6 11.0 94 427-524 91-186 (304)
157 PRK15331 chaperone protein Sic 97.9 0.00036 7.9E-09 58.9 13.2 89 493-581 42-132 (165)
158 PF13812 PPR_3: Pentatricopept 97.9 2.2E-05 4.7E-10 47.9 4.5 33 418-450 2-34 (34)
159 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00037 8.1E-09 57.4 12.5 105 454-558 4-114 (119)
160 PRK02603 photosystem I assembl 97.8 0.00027 5.9E-09 62.6 11.9 92 489-580 36-146 (172)
161 KOG1130 Predicted G-alpha GTPa 97.8 0.0002 4.2E-09 68.4 11.2 129 454-582 197-343 (639)
162 PF14938 SNAP: Soluble NSF att 97.8 0.01 2.3E-07 57.3 23.6 142 424-580 101-263 (282)
163 PRK10153 DNA-binding transcrip 97.8 0.0011 2.5E-08 69.0 17.3 63 519-582 419-481 (517)
164 COG4235 Cytochrome c biogenesi 97.8 0.0014 3E-08 61.0 15.5 102 485-586 153-259 (287)
165 PF14938 SNAP: Soluble NSF att 97.7 0.0045 9.7E-08 59.8 19.3 97 419-515 157-264 (282)
166 PF07079 DUF1347: Protein of u 97.7 0.063 1.4E-06 52.8 32.0 59 462-525 472-530 (549)
167 PRK10153 DNA-binding transcrip 97.7 0.0028 6.1E-08 66.1 18.4 139 415-555 335-488 (517)
168 PLN03088 SGT1, suppressor of 97.7 0.00082 1.8E-08 67.1 13.9 104 460-566 10-116 (356)
169 PF01535 PPR: PPR repeat; Int 97.7 6.2E-05 1.4E-09 44.7 3.6 31 317-347 1-31 (31)
170 KOG0543 FKBP-type peptidyl-pro 97.7 0.0003 6.5E-09 67.7 9.9 86 521-632 258-343 (397)
171 CHL00033 ycf3 photosystem I as 97.6 0.00051 1.1E-08 60.7 10.7 93 488-580 35-139 (168)
172 PRK02603 photosystem I assembl 97.6 0.0014 3E-08 58.1 13.5 129 416-568 34-165 (172)
173 KOG2053 Mitochondrial inherita 97.6 0.14 3E-06 54.8 37.4 159 420-581 439-606 (932)
174 PF12895 Apc3: Anaphase-promot 97.6 0.00027 5.9E-09 53.9 7.2 81 430-513 2-83 (84)
175 PRK15363 pathogenicity island 97.6 0.00086 1.9E-08 56.4 10.5 90 518-633 33-122 (157)
176 PF01535 PPR: PPR repeat; Int 97.6 8.7E-05 1.9E-09 44.1 3.4 31 418-448 1-31 (31)
177 cd00189 TPR Tetratricopeptide 97.6 0.0011 2.4E-08 51.6 11.0 91 420-513 3-93 (100)
178 PF05843 Suf: Suppressor of fo 97.6 0.0028 6.1E-08 60.9 15.3 134 418-554 2-141 (280)
179 KOG1914 mRNA cleavage and poly 97.5 0.13 2.8E-06 51.8 37.2 430 118-572 17-528 (656)
180 KOG2280 Vacuolar assembly/sort 97.5 0.17 3.6E-06 53.1 27.5 322 228-581 442-797 (829)
181 PRK10803 tol-pal system protei 97.5 0.0011 2.4E-08 62.5 11.5 91 490-580 145-243 (263)
182 PF13432 TPR_16: Tetratricopep 97.5 0.00042 9.2E-09 49.8 6.8 61 494-554 3-65 (65)
183 COG4700 Uncharacterized protei 97.5 0.019 4E-07 49.2 17.0 131 448-580 85-219 (251)
184 PF04840 Vps16_C: Vps16, C-ter 97.5 0.12 2.5E-06 50.5 25.3 111 454-581 179-289 (319)
185 PF07079 DUF1347: Protein of u 97.5 0.13 2.7E-06 50.7 34.6 428 132-580 17-521 (549)
186 PF13431 TPR_17: Tetratricopep 97.5 7.9E-05 1.7E-09 45.1 2.1 34 542-575 1-34 (34)
187 KOG2041 WD40 repeat protein [G 97.5 0.19 4.1E-06 52.1 27.1 127 170-311 747-878 (1189)
188 CHL00033 ycf3 photosystem I as 97.4 0.0058 1.3E-07 53.9 13.5 63 418-480 36-100 (168)
189 KOG2796 Uncharacterized conser 97.3 0.042 9.2E-07 49.9 17.9 230 224-456 70-323 (366)
190 KOG1130 Predicted G-alpha GTPa 97.3 0.0026 5.7E-08 61.0 10.9 130 419-548 197-343 (639)
191 PF08579 RPM2: Mitochondrial r 97.3 0.0052 1.1E-07 48.0 10.4 79 320-398 29-116 (120)
192 PF08579 RPM2: Mitochondrial r 97.3 0.0056 1.2E-07 47.8 10.6 80 420-500 28-116 (120)
193 PRK10866 outer membrane biogen 97.2 0.11 2.5E-06 48.6 21.4 57 457-513 180-237 (243)
194 PF14559 TPR_19: Tetratricopep 97.2 0.00043 9.4E-09 50.3 4.0 60 464-525 3-63 (68)
195 PF12688 TPR_5: Tetratrico pep 97.2 0.0042 9.1E-08 50.5 9.8 86 495-580 8-101 (120)
196 PF13414 TPR_11: TPR repeat; P 97.2 0.0011 2.3E-08 48.4 5.9 64 488-551 3-69 (69)
197 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0017 3.7E-08 64.3 8.8 65 519-583 74-141 (453)
198 PRK10866 outer membrane biogen 97.1 0.14 3E-06 48.0 20.9 54 493-546 180-238 (243)
199 KOG0550 Molecular chaperone (D 97.1 0.13 2.8E-06 50.0 20.4 262 198-480 55-349 (486)
200 PF05843 Suf: Suppressor of fo 97.1 0.007 1.5E-07 58.2 12.3 130 453-584 2-137 (280)
201 COG3898 Uncharacterized membra 97.1 0.32 7E-06 47.0 29.2 273 298-583 97-392 (531)
202 PF12688 TPR_5: Tetratrico pep 97.1 0.018 4E-07 46.8 12.3 91 423-513 7-100 (120)
203 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.41 8.8E-06 47.2 28.1 430 84-531 37-546 (660)
204 PF06239 ECSIT: Evolutionarily 97.0 0.01 2.2E-07 52.6 11.0 96 305-400 34-152 (228)
205 PF13281 DUF4071: Domain of un 97.0 0.11 2.3E-06 51.2 19.1 160 391-553 146-338 (374)
206 PF10037 MRP-S27: Mitochondria 97.0 0.017 3.8E-07 57.9 13.9 96 318-413 68-165 (429)
207 COG4700 Uncharacterized protei 97.0 0.16 3.6E-06 43.7 17.4 120 384-508 87-213 (251)
208 KOG2280 Vacuolar assembly/sort 97.0 0.65 1.4E-05 48.9 31.5 96 186-281 426-534 (829)
209 PF06239 ECSIT: Evolutionarily 97.0 0.01 2.2E-07 52.6 10.7 97 406-503 34-153 (228)
210 PF10037 MRP-S27: Mitochondria 97.0 0.011 2.4E-07 59.2 12.4 118 346-463 61-184 (429)
211 PF13428 TPR_14: Tetratricopep 97.0 0.0013 2.8E-08 42.7 4.0 42 521-562 2-43 (44)
212 PF13428 TPR_14: Tetratricopep 96.9 0.0015 3.2E-08 42.4 4.1 43 554-622 1-43 (44)
213 PF13525 YfiO: Outer membrane 96.9 0.19 4.1E-06 45.8 19.0 177 322-507 11-197 (203)
214 PRK10803 tol-pal system protei 96.9 0.026 5.6E-07 53.4 13.4 101 454-554 145-251 (263)
215 KOG2796 Uncharacterized conser 96.9 0.066 1.4E-06 48.7 14.8 136 421-584 181-316 (366)
216 PF13525 YfiO: Outer membrane 96.8 0.15 3.3E-06 46.4 17.9 142 420-582 8-169 (203)
217 KOG4555 TPR repeat-containing 96.8 0.011 2.4E-07 47.3 8.3 117 496-626 51-173 (175)
218 PF13371 TPR_9: Tetratricopept 96.8 0.0053 1.1E-07 45.2 6.5 64 496-559 3-68 (73)
219 KOG2041 WD40 repeat protein [G 96.8 0.91 2E-05 47.4 30.9 186 236-445 747-951 (1189)
220 PF09205 DUF1955: Domain of un 96.7 0.14 3E-06 41.4 14.0 141 427-586 12-152 (161)
221 KOG1538 Uncharacterized conser 96.7 0.15 3.2E-06 52.4 17.3 175 319-515 601-800 (1081)
222 PF13424 TPR_12: Tetratricopep 96.6 0.0033 7.2E-08 47.1 4.4 61 521-581 6-73 (78)
223 KOG1538 Uncharacterized conser 96.5 0.21 4.6E-06 51.3 17.0 55 160-217 601-657 (1081)
224 PF13512 TPR_18: Tetratricopep 96.4 0.079 1.7E-06 44.0 11.7 87 495-581 17-126 (142)
225 KOG0543 FKBP-type peptidyl-pro 96.4 0.043 9.4E-07 53.3 11.4 95 489-583 258-355 (397)
226 PRK11906 transcriptional regul 96.3 0.076 1.7E-06 53.0 12.8 144 432-579 273-432 (458)
227 PF13424 TPR_12: Tetratricopep 96.2 0.0094 2E-07 44.6 4.8 27 522-548 48-74 (78)
228 COG4235 Cytochrome c biogenesi 96.1 0.42 9.1E-06 44.9 16.1 102 451-554 155-261 (287)
229 COG0457 NrfG FOG: TPR repeat [ 96.1 1.1 2.4E-05 41.3 27.9 187 390-580 63-262 (291)
230 KOG4234 TPR repeat-containing 96.1 0.024 5.2E-07 49.1 7.3 89 497-585 104-199 (271)
231 PF03704 BTAD: Bacterial trans 96.1 0.026 5.6E-07 48.4 7.7 61 522-582 64-124 (146)
232 KOG1585 Protein required for f 96.0 0.96 2.1E-05 41.0 16.9 50 526-576 196-249 (308)
233 COG3898 Uncharacterized membra 96.0 1.7 3.6E-05 42.4 28.5 209 297-514 166-389 (531)
234 KOG2066 Vacuolar assembly/sort 95.9 2.9 6.3E-05 44.6 26.5 72 457-540 639-710 (846)
235 COG0457 NrfG FOG: TPR repeat [ 95.8 1.5 3.3E-05 40.4 27.4 221 330-552 37-268 (291)
236 KOG1941 Acetylcholine receptor 95.8 0.12 2.6E-06 49.3 10.9 46 327-372 17-64 (518)
237 KOG4648 Uncharacterized conser 95.7 0.029 6.4E-07 52.8 6.5 83 498-580 107-191 (536)
238 PRK15331 chaperone protein Sic 95.5 0.4 8.6E-06 40.9 12.1 84 428-514 48-131 (165)
239 PF12921 ATP13: Mitochondrial 95.5 0.22 4.9E-06 40.9 10.4 49 448-496 48-96 (126)
240 COG3118 Thioredoxin domain-con 95.5 1.3 2.8E-05 41.6 16.2 166 404-571 121-289 (304)
241 PF13281 DUF4071: Domain of un 95.4 2.1 4.6E-05 42.3 18.6 164 419-583 143-334 (374)
242 COG3118 Thioredoxin domain-con 95.4 0.47 1E-05 44.4 13.3 121 460-583 142-265 (304)
243 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.62 1.3E-05 46.8 14.9 61 385-445 74-140 (453)
244 KOG2114 Vacuolar assembly/sort 95.3 5.1 0.00011 43.2 26.7 53 494-547 711-763 (933)
245 COG1729 Uncharacterized protei 95.2 0.14 3.1E-06 47.3 9.4 56 526-581 184-242 (262)
246 PF10300 DUF3808: Protein of u 95.2 1.1 2.3E-05 46.7 17.0 161 419-582 190-375 (468)
247 KOG1920 IkappaB kinase complex 95.2 7 0.00015 44.0 25.6 159 237-414 894-1054(1265)
248 COG4105 ComL DNA uptake lipopr 95.2 2.6 5.6E-05 38.9 17.9 141 419-583 36-196 (254)
249 PF04053 Coatomer_WDAD: Coatom 95.2 0.94 2E-05 46.5 16.0 127 226-373 298-424 (443)
250 PRK11906 transcriptional regul 95.2 1.4 3.1E-05 44.4 16.5 141 401-546 273-433 (458)
251 PF06552 TOM20_plant: Plant sp 95.1 0.061 1.3E-06 46.3 6.1 69 536-623 51-123 (186)
252 PF04184 ST7: ST7 protein; In 95.1 2.9 6.4E-05 42.3 18.4 143 323-479 175-322 (539)
253 PF07719 TPR_2: Tetratricopept 95.1 0.067 1.5E-06 32.1 4.8 32 522-553 3-34 (34)
254 PF13512 TPR_18: Tetratricopep 95.1 0.84 1.8E-05 38.0 12.5 116 423-554 16-133 (142)
255 PF00515 TPR_1: Tetratricopept 95.1 0.049 1.1E-06 32.8 4.1 32 521-552 2-33 (34)
256 PF03704 BTAD: Bacterial trans 95.0 0.31 6.8E-06 41.6 10.6 71 419-490 64-138 (146)
257 COG4785 NlpI Lipoprotein NlpI, 95.0 1.3 2.8E-05 39.4 13.9 179 400-585 79-268 (297)
258 PF12921 ATP13: Mitochondrial 95.0 0.31 6.8E-06 40.0 9.8 48 483-530 47-98 (126)
259 smart00299 CLH Clathrin heavy 95.0 1.7 3.6E-05 36.8 14.8 85 161-249 11-95 (140)
260 smart00299 CLH Clathrin heavy 95.0 1.4 2.9E-05 37.3 14.2 39 358-397 14-52 (140)
261 COG1729 Uncharacterized protei 94.8 0.33 7.2E-06 45.0 10.4 95 419-514 144-241 (262)
262 PF04053 Coatomer_WDAD: Coatom 94.8 1.1 2.5E-05 45.9 15.4 157 231-412 269-428 (443)
263 KOG3941 Intermediate in Toll s 94.7 0.18 3.8E-06 46.5 8.3 73 135-208 86-174 (406)
264 PF10300 DUF3808: Protein of u 94.7 1.2 2.6E-05 46.4 15.8 115 399-515 246-374 (468)
265 KOG1258 mRNA processing protei 94.7 6.2 0.00013 41.0 31.0 408 120-568 44-489 (577)
266 PF14853 Fis1_TPR_C: Fis1 C-te 94.7 0.13 2.9E-06 34.5 5.6 49 556-630 3-51 (53)
267 KOG3941 Intermediate in Toll s 94.6 0.33 7.1E-06 44.8 9.7 100 404-504 52-174 (406)
268 COG5107 RNA14 Pre-mRNA 3'-end 94.6 5.5 0.00012 39.7 33.3 128 454-583 399-531 (660)
269 PF07719 TPR_2: Tetratricopept 94.5 0.044 9.6E-07 32.9 2.9 28 555-582 2-29 (34)
270 COG4105 ComL DNA uptake lipopr 94.2 4.6 0.0001 37.3 20.6 179 384-582 33-232 (254)
271 KOG4234 TPR repeat-containing 94.1 0.12 2.7E-06 44.9 5.7 86 528-639 103-193 (271)
272 PF02259 FAT: FAT domain; Int 94.0 7.4 0.00016 38.9 21.4 150 415-567 144-305 (352)
273 KOG2610 Uncharacterized conser 93.7 0.7 1.5E-05 43.8 10.1 160 428-590 114-283 (491)
274 PF00515 TPR_1: Tetratricopept 93.5 0.066 1.4E-06 32.2 2.3 28 555-582 2-29 (34)
275 PF04184 ST7: ST7 protein; In 93.4 1.8 3.8E-05 43.8 12.9 71 524-594 263-335 (539)
276 PRK11619 lytic murein transgly 93.4 14 0.0003 40.3 34.3 128 429-563 253-385 (644)
277 KOG2114 Vacuolar assembly/sort 93.4 5.5 0.00012 43.0 16.9 177 354-545 337-515 (933)
278 PF13176 TPR_7: Tetratricopept 93.3 0.15 3.2E-06 31.2 3.6 26 556-581 1-26 (36)
279 KOG1941 Acetylcholine receptor 93.3 2.7 5.8E-05 40.6 13.3 219 296-514 17-272 (518)
280 PF09205 DUF1955: Domain of un 93.3 3.8 8.2E-05 33.4 14.2 64 419-484 88-151 (161)
281 KOG4555 TPR repeat-containing 93.3 0.71 1.5E-05 37.3 8.1 91 461-553 52-148 (175)
282 PF10602 RPN7: 26S proteasome 93.3 2.2 4.9E-05 37.6 12.4 95 419-515 38-140 (177)
283 KOG1585 Protein required for f 93.2 6.7 0.00014 35.9 15.5 20 322-341 97-116 (308)
284 KOG0890 Protein kinase of the 92.9 30 0.00064 42.5 31.6 306 262-585 1391-1733(2382)
285 PF09613 HrpB1_HrpK: Bacterial 92.9 1.4 3E-05 37.6 9.8 70 500-569 22-93 (160)
286 KOG1920 IkappaB kinase complex 92.8 21 0.00045 40.5 27.4 154 400-581 894-1053(1265)
287 PRK09687 putative lyase; Provi 92.7 9.8 0.00021 36.6 25.7 25 526-551 241-265 (280)
288 PF13181 TPR_8: Tetratricopept 92.3 0.29 6.4E-06 29.2 4.0 31 522-552 3-33 (34)
289 PF13170 DUF4003: Protein of u 92.3 3.3 7.1E-05 40.0 12.9 63 433-496 159-225 (297)
290 KOG1586 Protein required for f 92.2 8.8 0.00019 34.9 18.8 93 493-585 118-226 (288)
291 PF00637 Clathrin: Region in C 92.2 0.32 6.9E-06 41.4 5.5 85 162-249 12-96 (143)
292 PF07035 Mic1: Colon cancer-as 92.1 4.7 0.0001 34.9 12.3 117 147-271 19-137 (167)
293 COG4649 Uncharacterized protei 92.0 3.3 7.2E-05 35.5 10.9 19 326-344 104-122 (221)
294 KOG1586 Protein required for f 91.9 9.6 0.00021 34.6 21.1 58 498-555 164-230 (288)
295 KOG3364 Membrane protein invol 91.9 1.9 4.1E-05 35.3 8.9 87 518-630 30-121 (149)
296 COG3629 DnrI DNA-binding trans 91.7 0.86 1.9E-05 43.0 8.1 61 522-582 155-215 (280)
297 PF07035 Mic1: Colon cancer-as 91.7 8.2 0.00018 33.4 13.6 48 178-225 15-62 (167)
298 COG2909 MalT ATP-dependent tra 91.7 23 0.00049 39.0 19.1 193 398-594 427-658 (894)
299 PF09613 HrpB1_HrpK: Bacterial 91.7 7.2 0.00016 33.3 12.7 108 462-575 20-130 (160)
300 PRK10941 hypothetical protein; 91.5 2 4.2E-05 40.8 10.3 59 523-581 184-242 (269)
301 PF08631 SPO22: Meiosis protei 91.5 14 0.0003 35.6 24.1 18 530-547 256-273 (278)
302 COG1747 Uncharacterized N-term 91.5 18 0.00039 37.0 23.3 176 383-565 63-250 (711)
303 KOG4648 Uncharacterized conser 91.4 0.59 1.3E-05 44.4 6.5 29 527-555 172-200 (536)
304 TIGR02561 HrpB1_HrpK type III 91.2 1.5 3.4E-05 36.6 8.0 51 533-583 23-73 (153)
305 PF13176 TPR_7: Tetratricopept 90.6 0.51 1.1E-05 28.7 3.7 27 522-548 1-27 (36)
306 PF13174 TPR_6: Tetratricopept 90.5 0.32 6.8E-06 28.7 2.7 28 556-583 2-29 (33)
307 PF04097 Nic96: Nup93/Nic96; 90.3 31 0.00067 37.5 21.0 86 494-580 420-531 (613)
308 KOG1464 COP9 signalosome, subu 90.3 15 0.00033 34.0 18.5 239 299-543 41-326 (440)
309 PF02259 FAT: FAT domain; Int 90.2 21 0.00047 35.6 22.5 54 322-379 4-57 (352)
310 COG3947 Response regulator con 90.2 13 0.00028 35.0 13.7 57 525-581 284-340 (361)
311 KOG1550 Extracellular protein 90.0 30 0.00066 37.1 23.4 211 366-583 308-538 (552)
312 COG4785 NlpI Lipoprotein NlpI, 89.9 4 8.6E-05 36.5 9.8 87 465-554 78-167 (297)
313 PF10602 RPN7: 26S proteasome 89.9 7.2 0.00016 34.4 11.8 62 318-379 38-101 (177)
314 COG2976 Uncharacterized protei 89.2 15 0.00033 32.4 14.2 127 420-553 57-192 (207)
315 KOG2610 Uncharacterized conser 89.1 22 0.00048 34.2 18.1 113 329-442 116-234 (491)
316 KOG0545 Aryl-hydrocarbon recep 88.9 6.5 0.00014 35.9 10.6 54 527-580 237-290 (329)
317 PF07721 TPR_4: Tetratricopept 88.9 0.58 1.2E-05 26.0 2.7 24 555-578 2-25 (26)
318 KOG0890 Protein kinase of the 88.7 71 0.0015 39.6 27.2 308 228-550 1388-1732(2382)
319 PRK09687 putative lyase; Provi 88.6 24 0.00051 34.0 26.3 85 435-530 192-277 (280)
320 COG1747 Uncharacterized N-term 88.3 33 0.00071 35.2 22.1 49 466-514 183-231 (711)
321 COG3629 DnrI DNA-binding trans 87.8 6.1 0.00013 37.4 10.3 57 388-444 155-214 (280)
322 PF13170 DUF4003: Protein of u 87.6 12 0.00025 36.3 12.4 127 332-460 78-225 (297)
323 PF02284 COX5A: Cytochrome c o 86.8 6.1 0.00013 30.6 7.8 60 435-496 28-87 (108)
324 PF08631 SPO22: Meiosis protei 86.6 31 0.00068 33.1 24.0 160 419-580 86-272 (278)
325 PF13374 TPR_10: Tetratricopep 86.2 1.3 2.7E-05 27.8 3.6 27 556-582 4-30 (42)
326 PF13431 TPR_17: Tetratricopep 86.1 1.1 2.3E-05 26.9 3.0 21 488-508 13-33 (34)
327 KOG2396 HAT (Half-A-TPR) repea 85.9 44 0.00096 34.2 26.4 87 458-547 466-557 (568)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 85.7 8.2 0.00018 29.6 7.9 63 432-496 22-84 (103)
329 PRK12798 chemotaxis protein; R 85.6 42 0.00091 33.7 24.2 205 399-630 125-347 (421)
330 PF13174 TPR_6: Tetratricopept 85.4 1.8 4E-05 25.3 3.9 30 524-553 4-33 (33)
331 PF04097 Nic96: Nup93/Nic96; 85.3 61 0.0013 35.3 24.3 48 122-171 112-159 (613)
332 KOG0376 Serine-threonine phosp 85.0 1.6 3.4E-05 43.9 5.2 84 497-580 13-98 (476)
333 PF13181 TPR_8: Tetratricopept 84.9 1.7 3.6E-05 25.8 3.5 28 555-582 2-29 (34)
334 COG4455 ImpE Protein of avirul 84.9 30 0.00064 31.3 12.5 126 419-555 3-140 (273)
335 PF13374 TPR_10: Tetratricopep 84.7 2.4 5.2E-05 26.4 4.5 28 521-548 3-30 (42)
336 KOG2063 Vacuolar assembly/sort 84.6 52 0.0011 36.8 16.7 27 318-344 506-532 (877)
337 PF14561 TPR_20: Tetratricopep 84.5 5.8 0.00013 30.3 7.1 43 540-582 8-50 (90)
338 KOG0276 Vesicle coat complex C 84.3 24 0.00052 36.9 12.9 150 398-580 598-747 (794)
339 KOG1550 Extracellular protein 84.2 51 0.0011 35.4 16.6 15 367-381 228-242 (552)
340 PF10345 Cohesin_load: Cohesin 84.0 70 0.0015 34.9 29.7 157 91-249 61-251 (608)
341 KOG4642 Chaperone-dependent E3 83.6 4.9 0.00011 36.5 7.1 82 501-582 23-106 (284)
342 smart00028 TPR Tetratricopepti 83.3 2.2 4.8E-05 24.1 3.7 27 525-551 6-32 (34)
343 PRK15180 Vi polysaccharide bio 83.0 17 0.00037 36.7 11.1 143 423-569 295-442 (831)
344 KOG0276 Vesicle coat complex C 82.8 18 0.00039 37.7 11.4 99 296-411 648-746 (794)
345 KOG4570 Uncharacterized conser 82.4 13 0.00028 35.4 9.5 99 381-480 59-163 (418)
346 KOG2066 Vacuolar assembly/sort 82.2 81 0.0018 34.3 26.8 147 167-316 366-536 (846)
347 PRK11619 lytic murein transgly 81.6 88 0.0019 34.3 39.1 367 191-588 128-510 (644)
348 COG4455 ImpE Protein of avirul 81.1 16 0.00034 33.0 9.1 60 494-553 7-68 (273)
349 PF00637 Clathrin: Region in C 81.1 1.7 3.6E-05 36.9 3.3 54 322-375 13-66 (143)
350 TIGR02508 type_III_yscG type I 81.0 24 0.00051 27.4 9.7 86 367-456 21-106 (115)
351 KOG1308 Hsp70-interacting prot 80.3 1.1 2.3E-05 42.9 1.9 87 500-586 126-214 (377)
352 TIGR02561 HrpB1_HrpK type III 80.2 13 0.00029 31.2 8.0 106 452-581 7-120 (153)
353 TIGR03504 FimV_Cterm FimV C-te 80.1 3.3 7.2E-05 26.6 3.5 27 558-584 3-29 (44)
354 PF14853 Fis1_TPR_C: Fis1 C-te 80.0 4.3 9.3E-05 27.3 4.2 32 525-556 6-37 (53)
355 COG2976 Uncharacterized protei 79.6 44 0.00096 29.7 15.0 54 393-446 133-188 (207)
356 PF04910 Tcf25: Transcriptiona 79.4 63 0.0014 32.4 14.2 57 526-582 109-167 (360)
357 TIGR02508 type_III_yscG type I 79.3 27 0.00059 27.1 9.0 59 293-354 47-105 (115)
358 KOG0551 Hsp90 co-chaperone CNS 78.6 26 0.00057 33.8 10.3 126 490-627 83-214 (390)
359 PF02284 COX5A: Cytochrome c o 78.2 17 0.00037 28.2 7.4 49 513-561 38-86 (108)
360 KOG3824 Huntingtin interacting 78.1 5 0.00011 37.8 5.4 50 531-580 127-176 (472)
361 PF11207 DUF2989: Protein of u 78.1 13 0.00029 33.1 7.8 76 498-574 117-198 (203)
362 PF13929 mRNA_stabil: mRNA sta 77.5 67 0.0015 30.6 14.0 113 136-249 143-264 (292)
363 KOG4570 Uncharacterized conser 77.4 8.8 0.00019 36.5 6.8 51 135-186 114-164 (418)
364 cd00923 Cyt_c_Oxidase_Va Cytoc 76.9 17 0.00036 28.0 6.9 48 514-561 36-83 (103)
365 PF06552 TOM20_plant: Plant sp 76.6 19 0.0004 31.5 8.1 86 468-584 51-137 (186)
366 COG4649 Uncharacterized protei 76.5 51 0.0011 28.7 16.0 129 418-548 60-195 (221)
367 COG4976 Predicted methyltransf 76.4 4.7 0.0001 36.4 4.6 54 531-584 6-59 (287)
368 smart00028 TPR Tetratricopepti 76.3 4.5 9.7E-05 22.7 3.4 28 555-582 2-29 (34)
369 PF09986 DUF2225: Uncharacteri 75.9 15 0.00033 33.6 8.0 62 522-583 120-194 (214)
370 PF07721 TPR_4: Tetratricopept 75.8 5.4 0.00012 22.0 3.2 20 493-512 6-25 (26)
371 KOG4507 Uncharacterized conser 75.4 15 0.00033 38.1 8.4 82 500-581 619-703 (886)
372 KOG1464 COP9 signalosome, subu 75.1 73 0.0016 29.8 16.1 183 328-510 39-253 (440)
373 PF00244 14-3-3: 14-3-3 protei 74.9 73 0.0016 29.7 14.0 194 422-633 6-231 (236)
374 COG0790 FOG: TPR repeat, SEL1 74.6 85 0.0018 30.3 19.6 115 467-585 128-268 (292)
375 PF09670 Cas_Cas02710: CRISPR- 74.1 70 0.0015 32.4 13.0 54 426-480 140-197 (379)
376 PRK15180 Vi polysaccharide bio 73.6 33 0.00072 34.8 10.0 138 395-535 298-442 (831)
377 PF10579 Rapsyn_N: Rapsyn N-te 73.6 9.6 0.00021 28.0 4.8 46 464-509 18-64 (80)
378 PF11207 DUF2989: Protein of u 73.3 34 0.00074 30.6 9.1 73 434-507 123-197 (203)
379 TIGR03504 FimV_Cterm FimV C-te 72.5 9.2 0.0002 24.6 4.1 25 322-346 5-29 (44)
380 PF04910 Tcf25: Transcriptiona 72.4 1.1E+02 0.0024 30.7 17.8 26 556-581 261-290 (360)
381 KOG4507 Uncharacterized conser 71.8 17 0.00037 37.8 7.7 98 465-565 620-721 (886)
382 PF10579 Rapsyn_N: Rapsyn N-te 71.8 16 0.00035 26.9 5.5 47 429-475 18-66 (80)
383 KOG4279 Serine/threonine prote 71.4 1.2E+02 0.0026 33.0 13.7 154 388-554 203-400 (1226)
384 KOG0686 COP9 signalosome, subu 71.2 1.2E+02 0.0025 30.5 13.9 58 287-344 152-215 (466)
385 PHA02875 ankyrin repeat protei 69.5 90 0.0019 32.0 13.1 67 148-218 21-91 (413)
386 PF07163 Pex26: Pex26 protein; 69.4 61 0.0013 30.6 10.1 57 424-480 90-146 (309)
387 KOG1498 26S proteasome regulat 69.3 1.3E+02 0.0027 30.1 13.9 220 399-624 25-279 (439)
388 PHA02875 ankyrin repeat protei 68.7 1.4E+02 0.0031 30.5 18.0 139 100-247 9-156 (413)
389 PRK10941 hypothetical protein; 68.1 42 0.00091 32.0 9.3 68 491-558 184-253 (269)
390 KOG1258 mRNA processing protei 68.0 1.7E+02 0.0037 31.0 32.2 176 285-462 297-485 (577)
391 smart00386 HAT HAT (Half-A-TPR 67.7 9.5 0.00021 21.9 3.4 30 534-563 1-30 (33)
392 KOG3807 Predicted membrane pro 66.8 95 0.0021 30.0 11.0 55 422-478 280-337 (556)
393 PF10345 Cohesin_load: Cohesin 66.8 2E+02 0.0043 31.4 35.7 121 118-249 27-165 (608)
394 KOG4077 Cytochrome c oxidase, 66.4 47 0.001 27.1 7.5 59 435-495 67-125 (149)
395 KOG4642 Chaperone-dependent E3 66.3 86 0.0019 29.0 10.1 118 395-514 19-143 (284)
396 TIGR02270 conserved hypothetic 66.2 1.6E+02 0.0035 30.1 24.4 119 189-309 97-215 (410)
397 PRK13342 recombination factor 66.1 1.6E+02 0.0036 30.2 16.2 99 348-464 173-277 (413)
398 PRK13800 putative oxidoreducta 66.0 2.6E+02 0.0056 32.4 27.0 27 275-301 625-651 (897)
399 PF12862 Apc5: Anaphase-promot 65.4 22 0.00047 27.4 5.8 53 530-582 8-69 (94)
400 COG5159 RPN6 26S proteasome re 65.2 1.3E+02 0.0028 28.6 12.6 120 322-441 9-149 (421)
401 COG5159 RPN6 26S proteasome re 64.9 1.3E+02 0.0028 28.6 13.1 50 424-473 10-66 (421)
402 KOG2422 Uncharacterized conser 64.2 1E+02 0.0022 32.4 11.4 74 528-601 350-427 (665)
403 COG2912 Uncharacterized conser 63.8 44 0.00096 31.4 8.2 55 528-582 189-243 (269)
404 PF07163 Pex26: Pex26 protein; 63.7 96 0.0021 29.4 10.2 88 322-409 89-181 (309)
405 PF09477 Type_III_YscG: Bacter 63.2 73 0.0016 25.1 9.6 86 366-455 21-106 (116)
406 PF13762 MNE1: Mitochondrial s 62.7 95 0.0021 26.3 10.4 77 389-465 42-128 (145)
407 TIGR02270 conserved hypothetic 61.3 2E+02 0.0043 29.5 23.8 172 164-341 45-216 (410)
408 PF13934 ELYS: Nuclear pore co 61.1 1.1E+02 0.0024 28.2 10.6 20 458-477 114-133 (226)
409 PRK13800 putative oxidoreducta 61.0 3.1E+02 0.0068 31.7 26.8 253 213-480 625-880 (897)
410 PF13762 MNE1: Mitochondrial s 59.6 1.1E+02 0.0023 25.9 10.8 92 77-170 25-128 (145)
411 PF14863 Alkyl_sulf_dimr: Alky 59.6 40 0.00087 28.3 6.6 63 504-569 57-119 (141)
412 PF08311 Mad3_BUB1_I: Mad3/BUB 58.7 67 0.0015 26.4 7.8 42 538-579 81-124 (126)
413 KOG2471 TPR repeat-containing 58.3 80 0.0017 32.4 9.3 53 528-580 214-266 (696)
414 KOG2471 TPR repeat-containing 58.2 2.3E+02 0.005 29.3 14.7 102 395-499 249-380 (696)
415 COG4941 Predicted RNA polymera 58.1 1.2E+02 0.0027 29.4 10.1 120 432-556 271-401 (415)
416 cd08819 CARD_MDA5_2 Caspase ac 57.5 47 0.001 25.1 5.8 32 299-331 50-81 (88)
417 KOG0292 Vesicle coat complex C 57.4 14 0.0003 40.3 4.3 95 430-548 606-700 (1202)
418 PF10366 Vps39_1: Vacuolar sor 57.1 51 0.0011 26.3 6.6 27 419-445 41-67 (108)
419 PF11846 DUF3366: Domain of un 56.0 44 0.00095 30.0 6.9 34 518-551 142-175 (193)
420 PF14669 Asp_Glu_race_2: Putat 54.6 1.6E+02 0.0034 26.2 13.4 65 151-215 2-74 (233)
421 PF10255 Paf67: RNA polymerase 54.5 65 0.0014 32.6 8.3 55 289-343 126-191 (404)
422 KOG0991 Replication factor C, 53.1 1.9E+02 0.0041 26.7 11.6 53 408-462 230-282 (333)
423 cd08819 CARD_MDA5_2 Caspase ac 51.6 1E+02 0.0023 23.3 7.3 38 398-436 48-85 (88)
424 COG2909 MalT ATP-dependent tra 51.5 4E+02 0.0086 30.0 33.1 181 397-580 469-685 (894)
425 PF07720 TPR_3: Tetratricopept 51.1 55 0.0012 19.9 4.8 18 525-542 6-23 (36)
426 KOG0376 Serine-threonine phosp 50.5 25 0.00055 35.7 4.6 103 425-532 12-117 (476)
427 COG4976 Predicted methyltransf 50.5 26 0.00056 31.9 4.2 56 498-553 5-62 (287)
428 KOG3364 Membrane protein invol 50.4 1.5E+02 0.0032 24.7 8.6 69 486-554 30-105 (149)
429 PF11846 DUF3366: Domain of un 48.6 79 0.0017 28.3 7.4 51 464-514 120-170 (193)
430 PF10255 Paf67: RNA polymerase 48.1 1.4E+02 0.0031 30.2 9.5 27 285-311 164-190 (404)
431 KOG2422 Uncharacterized conser 47.8 3.7E+02 0.008 28.6 14.5 155 425-582 350-515 (665)
432 PF11838 ERAP1_C: ERAP1-like C 47.7 2.8E+02 0.0061 27.1 19.4 113 466-579 144-262 (324)
433 KOG0292 Vesicle coat complex C 47.5 2.7E+02 0.0058 31.2 11.6 178 327-548 604-781 (1202)
434 cd00280 TRFH Telomeric Repeat 47.2 2E+02 0.0044 25.4 11.3 47 528-575 119-165 (200)
435 PF11663 Toxin_YhaV: Toxin wit 47.1 29 0.00062 28.6 3.6 32 133-167 107-138 (140)
436 PF11848 DUF3368: Domain of un 47.0 59 0.0013 21.3 4.6 33 168-200 13-45 (48)
437 PF11768 DUF3312: Protein of u 46.1 3.1E+02 0.0068 28.9 11.6 55 391-445 413-472 (545)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 45.8 1.7E+02 0.0037 24.1 8.7 43 435-477 81-124 (126)
439 KOG4521 Nuclear pore complex, 45.3 5.6E+02 0.012 29.9 15.2 80 454-535 985-1069(1480)
440 PF04781 DUF627: Protein of un 45.0 1.3E+02 0.0029 24.0 6.9 42 539-580 63-104 (111)
441 KOG1498 26S proteasome regulat 44.3 3.5E+02 0.0075 27.2 16.8 93 422-514 136-238 (439)
442 PF10366 Vps39_1: Vacuolar sor 43.8 1.5E+02 0.0032 23.6 7.3 27 318-344 41-67 (108)
443 PRK10564 maltose regulon perip 43.7 47 0.001 31.8 5.1 41 419-459 259-299 (303)
444 COG3947 Response regulator con 43.7 3E+02 0.0066 26.4 12.2 68 388-455 281-356 (361)
445 PF11663 Toxin_YhaV: Toxin wit 43.5 26 0.00055 28.9 2.9 33 327-361 106-138 (140)
446 PF12968 DUF3856: Domain of Un 43.2 1.1E+02 0.0024 24.7 6.2 79 504-582 32-128 (144)
447 PF11848 DUF3368: Domain of un 42.9 95 0.0021 20.3 5.3 33 327-359 13-45 (48)
448 KOG0687 26S proteasome regulat 42.9 3.3E+02 0.0072 26.6 12.1 94 418-514 105-207 (393)
449 COG0790 FOG: TPR repeat, SEL1 41.5 3.3E+02 0.0071 26.1 18.6 111 401-515 92-218 (292)
450 PF14689 SPOB_a: Sensor_kinase 40.9 68 0.0015 22.4 4.4 25 456-480 27-51 (62)
451 PRK11639 zinc uptake transcrip 40.8 1.5E+02 0.0032 25.9 7.6 61 147-208 16-76 (169)
452 PF10475 DUF2450: Protein of u 40.4 2.7E+02 0.0058 27.0 10.0 50 394-445 106-155 (291)
453 PRK10564 maltose regulon perip 39.7 59 0.0013 31.2 5.1 39 318-356 259-297 (303)
454 PRK14700 recombination factor 39.5 3.3E+02 0.0072 26.3 10.0 64 319-382 126-197 (300)
455 KOG4567 GTPase-activating prot 39.2 3.6E+02 0.0077 26.1 9.8 78 336-418 263-350 (370)
456 PF08424 NRDE-2: NRDE-2, neces 39.2 3.9E+02 0.0084 26.3 15.2 115 433-550 47-184 (321)
457 COG0735 Fur Fe2+/Zn2+ uptake r 38.7 1.7E+02 0.0037 24.8 7.4 59 147-206 11-69 (145)
458 cd00280 TRFH Telomeric Repeat 38.4 1.9E+02 0.0042 25.5 7.5 35 495-529 118-152 (200)
459 cd08326 CARD_CASP9 Caspase act 38.3 91 0.002 23.5 5.0 32 299-330 44-75 (84)
460 KOG4279 Serine/threonine prote 38.0 3.7E+02 0.008 29.6 10.7 101 418-521 202-321 (1226)
461 KOG4077 Cytochrome c oxidase, 37.7 1.8E+02 0.0038 23.9 6.6 47 514-560 78-124 (149)
462 PF04190 DUF410: Protein of un 37.7 3.6E+02 0.0079 25.6 21.0 157 297-480 2-169 (260)
463 KOG2581 26S proteasome regulat 37.5 4.5E+02 0.0098 26.6 16.0 23 455-477 212-234 (493)
464 KOG0686 COP9 signalosome, subu 37.5 4.5E+02 0.0098 26.6 14.8 93 318-412 152-255 (466)
465 PF04190 DUF410: Protein of un 37.2 3.7E+02 0.008 25.5 19.5 82 451-549 89-170 (260)
466 PF14689 SPOB_a: Sensor_kinase 37.0 60 0.0013 22.7 3.7 27 318-344 25-51 (62)
467 PF12862 Apc5: Anaphase-promot 37.0 1.9E+02 0.0041 22.1 8.3 53 428-480 9-69 (94)
468 PF00244 14-3-3: 14-3-3 protei 37.0 3.5E+02 0.0076 25.2 11.1 59 321-379 6-65 (236)
469 PF13934 ELYS: Nuclear pore co 36.6 3.5E+02 0.0076 25.0 13.5 20 423-442 114-133 (226)
470 KOG4567 GTPase-activating prot 36.4 4.1E+02 0.0088 25.8 10.0 73 437-515 263-345 (370)
471 KOG0687 26S proteasome regulat 36.0 4.3E+02 0.0093 25.9 13.9 26 454-479 106-131 (393)
472 KOG0545 Aryl-hydrocarbon recep 35.9 2.8E+02 0.006 25.9 8.3 65 491-555 233-299 (329)
473 TIGR02710 CRISPR-associated pr 35.6 4.8E+02 0.01 26.4 11.9 28 426-453 139-166 (380)
474 KOG2396 HAT (Half-A-TPR) repea 35.2 5.5E+02 0.012 26.9 34.6 240 333-581 299-557 (568)
475 PF10516 SHNi-TPR: SHNi-TPR; 35.0 83 0.0018 19.5 3.6 28 555-582 2-29 (38)
476 COG0735 Fur Fe2+/Zn2+ uptake r 34.6 2.1E+02 0.0046 24.2 7.3 44 423-466 26-69 (145)
477 PHA02537 M terminase endonucle 34.2 2.6E+02 0.0057 25.9 8.2 22 427-448 93-114 (230)
478 PRK09462 fur ferric uptake reg 34.1 2E+02 0.0042 24.4 7.2 61 147-208 7-68 (148)
479 PF04762 IKI3: IKI3 family; I 34.1 8.1E+02 0.017 28.5 17.2 50 526-580 878-927 (928)
480 COG5191 Uncharacterized conser 33.9 94 0.002 29.8 5.3 79 484-562 103-184 (435)
481 PLN03192 Voltage-dependent pot 33.9 3.5E+02 0.0075 31.0 11.1 134 203-338 533-674 (823)
482 PF09454 Vps23_core: Vps23 cor 33.8 1.7E+02 0.0036 20.8 5.4 49 415-464 6-54 (65)
483 KOG2908 26S proteasome regulat 33.8 2.8E+02 0.0062 27.2 8.5 78 392-469 81-174 (380)
484 PRK13341 recombination factor 33.7 7.3E+02 0.016 27.9 16.9 108 346-467 192-308 (725)
485 PF04034 DUF367: Domain of unk 33.6 2.7E+02 0.0059 22.9 7.6 59 488-546 66-125 (127)
486 KOG2581 26S proteasome regulat 33.3 4.1E+02 0.0089 26.9 9.6 137 417-553 124-280 (493)
487 KOG4814 Uncharacterized conser 33.2 5E+02 0.011 28.1 10.6 53 528-580 402-454 (872)
488 KOG2034 Vacuolar sorting prote 33.0 7.6E+02 0.016 27.9 24.9 303 262-586 366-699 (911)
489 COG5191 Uncharacterized conser 33.0 1.7E+02 0.0038 28.2 6.8 64 517-580 104-168 (435)
490 PF11817 Foie-gras_1: Foie gra 32.5 1.9E+02 0.0041 27.2 7.4 18 496-513 186-203 (247)
491 PF15469 Sec5: Exocyst complex 31.4 3.7E+02 0.0079 23.7 11.3 23 458-480 92-114 (182)
492 cd07153 Fur_like Ferric uptake 31.3 1.1E+02 0.0023 24.5 4.9 46 423-468 6-51 (116)
493 PF14432 DYW_deaminase: DYW fa 30.9 33 0.00071 27.8 1.7 27 590-620 2-28 (116)
494 PRK11639 zinc uptake transcrip 30.8 2E+02 0.0044 25.1 6.8 34 433-466 41-74 (169)
495 COG5187 RPN7 26S proteasome re 30.7 4.9E+02 0.011 25.0 12.1 139 373-513 60-217 (412)
496 KOG3783 Uncharacterized conser 30.6 6.7E+02 0.014 26.5 22.8 67 517-583 444-520 (546)
497 KOG1308 Hsp70-interacting prot 30.5 16 0.00034 35.4 -0.2 65 530-594 124-188 (377)
498 PF11817 Foie-gras_1: Foie gra 30.4 1.8E+02 0.0038 27.4 6.9 51 527-577 185-241 (247)
499 KOG3824 Huntingtin interacting 30.1 80 0.0017 30.2 4.2 49 463-514 127-176 (472)
500 PF09670 Cas_Cas02710: CRISPR- 30.0 6E+02 0.013 25.8 12.6 55 325-380 140-198 (379)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-85 Score=732.99 Aligned_cols=553 Identities=34% Similarity=0.595 Sum_probs=531.8
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCChHHHHHhhhcCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 040576 72 EFHQIHTQLLVSGLSQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAK 151 (641)
Q Consensus 72 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~ 151 (641)
.+.++|..+.+.|+.||..++|.+|. +|++.|+++.|.++|++|++||.++||+||.+|++.|++++|+++|. .|...
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~-~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~-~M~~~ 282 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALIT-MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFF-TMREL 282 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHH-HHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHH-HHHHc
Confidence 33444444455555556666678888 78999999999999999999999999999999999999999999999 99999
Q ss_pred CCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHH
Q 040576 152 FVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMID 231 (641)
Q Consensus 152 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 231 (641)
|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++||.+|+++|++++|.++|++|..+|.++||++|.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHhhC----CCCCchhHHHHHHHHhcCCChHHHHHHHhhcCC----CCchHHHHHHHHHHhcCChHH
Q 040576 232 GYVKNREVGFARELFDFM----PERDIFTWNSMISGYVDVGDMEAANGLFDLMPF----RDVVSWNCMIDGYAKIGNVTS 303 (641)
Q Consensus 232 ~~~~~g~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 303 (641)
+|++.|++++|+++|++| ..||..||+.++.+|++.|+++.|.++++.+.+ ++..+|+.|+++|+++|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999 679999999999999999999999999999975 568999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 040576 304 ARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIK 383 (641)
Q Consensus 304 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 383 (641)
|.++|++|.++|+.+||.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999986 69999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040576 384 PDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACT 463 (641)
Q Consensus 384 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 463 (641)
++..++++|+++|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040576 464 HAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVA 543 (641)
Q Consensus 464 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (641)
+.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|+.+|+..+|++|+.+|..+|+.+.|+.+.
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999999996699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEE----EeeeeecccccccCCCCchhhHHHH
Q 040576 544 QHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLV----HPGEFASESIVENCPPHRKCIVYSM 619 (641)
Q Consensus 544 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~ 619 (641)
+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|.||+||+ .+|.|.++ ++.||+..+ ||..
T Consensus 681 ~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~--d~~h~~~~~--i~~~ 756 (857)
T PLN03077 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTD--DESHPQIKE--INTV 756 (857)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecC--CCCCcchHH--HHHH
Confidence 999999999999999999999999999999999999999999999999999 89999999 999999999 9999
Q ss_pred HHHHHHHHHhhhc
Q 040576 620 LGEIGAQMKMCRR 632 (641)
Q Consensus 620 l~~l~~~~~~~~~ 632 (641)
|+.|..+|++.+=
T Consensus 757 l~~l~~~~~~~g~ 769 (857)
T PLN03077 757 LEGFYEKMKASGL 769 (857)
T ss_pred HHHHHHHHHhCCc
Confidence 9999999988764
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-77 Score=651.45 Aligned_cols=511 Identities=30% Similarity=0.514 Sum_probs=497.1
Q ss_pred CCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcC-CCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHH
Q 040576 117 QEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKF-VEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVR 195 (641)
Q Consensus 117 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 195 (641)
..++..+|+.+|.++.+.|++++|+++|+ .|...+ ..||..||+.++.+|++.++++.|.+++..|.+.|+.||..+|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~-~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFE-ILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 34677899999999999999999999999 787754 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhC----CCCCchhHHHHHHHHhcCCChH
Q 040576 196 NSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFM----PERDIFTWNSMISGYVDVGDME 271 (641)
Q Consensus 196 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~g~~~ 271 (641)
+.|+.+|+++|++++|.++|++|..+|.++||.+|.+|++.|++++|+++|++| ..||..||+.++.+|++.|+.+
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999999999999999999999999999999999999999 6799999999999999999999
Q ss_pred HHHHHHhhcCC----CCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 040576 272 AANGLFDLMPF----RDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDA 347 (641)
Q Consensus 272 ~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 347 (641)
.+.+++..+.+ +|..+|+.|+++|+++|++++|.++|++|.++|+++||.+|.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999988764 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHH
Q 040576 348 KPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGY 427 (641)
Q Consensus 348 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 427 (641)
.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|..+||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHH
Q 040576 428 GMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDS 507 (641)
Q Consensus 428 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 507 (641)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999988789999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 040576 508 EELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEK 587 (641)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 587 (641)
.+++++|+..|+..+|++|+.+|..+|+++.|+.+++++++++|++...|..|+++|++.|+|++|.++++.|.++|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEE----EeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhc
Q 040576 588 AVGSSLV----HPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRR 632 (641)
Q Consensus 588 ~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~ 632 (641)
.||+||+ .+|.|+++ +..||...+ +|..|..+..++++.+-
T Consensus 562 ~~g~s~i~~~~~~~~f~~~--d~~h~~~~~--i~~~l~~l~~~~~~~gy 606 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSG--DRLHPQSRE--IYQKLDELMKEISEYGY 606 (697)
T ss_pred CCCeeEEEECCeEEEEccC--CCCCccHHH--HHHHHHHHHHHHHHcCC
Confidence 9999999 78999999 999999999 99999999999998663
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-76 Score=658.38 Aligned_cols=553 Identities=28% Similarity=0.411 Sum_probs=472.7
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCChHHHHHhhhcCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 040576 71 KEFHQIHTQLLVSGLSQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMA 150 (641)
Q Consensus 71 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~ 150 (641)
..+.++|..+.+.|..++...+|.++. .|++.|+++.|.++|++|++||+++||.+|.+|++.|++++|+++|+ .|..
T Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~n~li~-~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~-~M~~ 180 (857)
T PLN03077 103 EEGSRVCSRALSSHPSLGVRLGNAMLS-MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYH-RMLW 180 (857)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHH-HHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHH-HHHH
Confidence 344445555555555556666688888 68999999999999999999999999999999999999999999999 8999
Q ss_pred cCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHH
Q 040576 151 KFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMI 230 (641)
Q Consensus 151 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 230 (641)
.|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..++++||.+|+++|++++|.++|++|..+|.++||++|
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li 260 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMI 260 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHhhC----CCCCchhHHHHHHHHhcCCChHHHHHHHhhcCC----CCchHHHHHHHHHHhcCChH
Q 040576 231 DGYVKNREVGFARELFDFM----PERDIFTWNSMISGYVDVGDMEAANGLFDLMPF----RDVVSWNCMIDGYAKIGNVT 302 (641)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~ 302 (641)
.+|++.|++++|+++|++| ..||..||+.++.+|++.|+++.|.+++..+.+ +|..+|+.|+.+|+++|+++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 9999999999999999999 789999999999999999999999999999874 67999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 040576 303 SARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRI 382 (641)
Q Consensus 303 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 382 (641)
+|.++|++|..+|+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+
T Consensus 341 ~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred HHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040576 383 KPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSAC 462 (641)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 462 (641)
.|+..++++|+++|+++|++++|.++|++|.++|..+|+.||.+|++.|+.++|+.+|++|.. ++.||..||..++.+|
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSAC 499 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 5999999999999999
Q ss_pred HhhccHHHHHHHHHHhHHhhCCCCchH------------------------------HHHHHHHHHhhcCCHHHHHHHHH
Q 040576 463 THAGMVLEGWWYFDLMQRIYKIEPKVE------------------------------HYGCMVDLLGRAGLMRDSEELVS 512 (641)
Q Consensus 463 ~~~g~~~~a~~~~~~~~~~~~~~p~~~------------------------------~~~~li~~~~~~g~~~~A~~~~~ 512 (641)
++.|+.+.+.+++..+.+ .|+.++.. +|+.+|.+|++.|+.++|+++|+
T Consensus 500 ~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred hhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 999888888888888877 66655544 45555555555555555555555
Q ss_pred hC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 040576 513 KL---PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELE--PRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEK 587 (641)
Q Consensus 513 ~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 587 (641)
+| ...||..+|+.++.+|.+.|++++|..+|+.+.+.. .++..+|..++++|.+.|++++|.+++++|. ++|
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~p 655 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITP 655 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCC
Confidence 55 245555555555555555556666666555555221 2233456666666666666666666666652 233
Q ss_pred cCceEEE------------EeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhcc
Q 040576 588 AVGSSLV------------HPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRRD 633 (641)
Q Consensus 588 ~~~~~~~------------~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~ 633 (641)
++. .|- ...+.++.++.+++|++.. .|..|.+++...++..+.
T Consensus 656 d~~-~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~--~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 656 DPA-VWGALLNACRIHRHVELGELAAQHIFELDPNSVG--YYILLCNLYADAGKWDEV 710 (857)
T ss_pred CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc--hHHHHHHHHHHCCChHHH
Confidence 321 121 3444556677889999999 999999988776665543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-64 Score=551.42 Aligned_cols=537 Identities=16% Similarity=0.189 Sum_probs=471.9
Q ss_pred CCCCChhHHHHHHHHHhhcCCChHHHHHhhhcCCCCCcc-----cHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcc
Q 040576 84 GLSQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQEPDAF-----MCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHY 158 (641)
Q Consensus 84 g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~ 158 (641)
+-.++...+..++. .+.+.|++++|+++|++|++++.. +++.++.+|.+.|...+|+.+|+ .|.. ||..
T Consensus 365 ~~~~~~~~~~~~y~-~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~-~M~~----pd~~ 438 (1060)
T PLN03218 365 SGKRKSPEYIDAYN-RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK-LIRN----PTLS 438 (1060)
T ss_pred CCCCCchHHHHHHH-HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH-HcCC----CCHH
Confidence 44566777888888 578899999999999999765544 55667788999999999999999 7864 8999
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCeeHHHHHHHHHH
Q 040576 159 TFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGP----VWDLVTWNSMIDGYV 234 (641)
Q Consensus 159 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 234 (641)
+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||..+|+.+|.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999865 689999999999999
Q ss_pred hCCChHHHHHHHhhC----CCCCchhHHHHHHHHhcCCChHHHHHHHhhcC------CCCchHHHHHHHHHHhcCChHHH
Q 040576 235 KNREVGFARELFDFM----PERDIFTWNSMISGYVDVGDMEAANGLFDLMP------FRDVVSWNCMIDGYAKIGNVTSA 304 (641)
Q Consensus 235 ~~g~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A 304 (641)
+.|++++|+++|++| ..||..+|+.++.+|++.|++++|.++|++|. .||..+|++|+.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999 67999999999999999999999999999995 47899999999999999999999
Q ss_pred HHHHHhcC----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 040576 305 RNCFDRMC----MRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKC 380 (641)
Q Consensus 305 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 380 (641)
.++|+.|. .++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999993 56779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040576 381 RIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMT----EKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFI 456 (641)
Q Consensus 381 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 456 (641)
|+.|+..+|++||.+|+++|++++|.++|++|. .||..+|+.||.+|++.|++++|+++|++|...|+.||..||+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 999999999999999999999999999999995 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh----c-------------------CCHHHHHHHHHh
Q 040576 457 CVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR----A-------------------GLMRDSEELVSK 513 (641)
Q Consensus 457 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~ 513 (641)
.++.+|++.|++++|.++|+.|.+ .|+.||..+|++++.+|.+ + +..++|..+|++
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 999999999999999999999998 8999999999999876432 2 224679999999
Q ss_pred C---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccC
Q 040576 514 L---PMEAGPALWGALLSACSTHSNSELGKIVAQHLM-ELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAV 589 (641)
Q Consensus 514 ~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 589 (641)
| +..||..+|+.++.++...+..+.+..+++.+. .-.+++..+|..|++.+.+. .++|..++++|...|+.|..
T Consensus 838 M~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 9 578999999999988888888888888887654 33466778999999987332 36899999999999999876
Q ss_pred c---eEEE-EeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhccccccc
Q 040576 590 G---SSLV-HPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRRDVASQI 638 (641)
Q Consensus 590 ~---~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 638 (641)
. .-|. .++++-.+ ..++-+...|..+...+ +.+..+|...
T Consensus 916 ~~~~~~~~~d~~~~~~~--------aa~~~l~~wl~~~~~~~-~~g~~lp~~~ 959 (1060)
T PLN03218 916 SFKKSPIVIDAEELPVF--------AAEVYLLTILKGLKHRL-AAGAKLPNVT 959 (1060)
T ss_pred ccccCceEEEcccCcch--------hHHHHHHHHHHHHHHHH-hccCcCCcce
Confidence 4 2344 44443333 22211555566655554 3345555443
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.4e-63 Score=541.74 Aligned_cols=489 Identities=16% Similarity=0.193 Sum_probs=456.4
Q ss_pred chHHHHHHhhcCChHHHHHHHHHHHHhCC-CCChhHHHHHHHHHhhcCCChHHHHHhhhcCCCCCcccHHHHHHHHHcCC
Q 040576 57 SHPILQKLESCSTVKEFHQIHTQLLVSGL-SQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQEPDAFMCNTIMKSFLMLN 135 (641)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 135 (641)
+..+...+..+++.+++.++++.|.+.|+ .++..+++.++. .|.+.|.+++|..+|+.|+.||..+||.+|.+|++.|
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~-~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFK-ACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCc
Confidence 45566666778999999999999999996 567777778888 7899999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 040576 136 DPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVF 215 (641)
Q Consensus 136 ~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 215 (641)
++++|.++|+ .|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|
T Consensus 452 ~~e~A~~lf~-~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 452 DIDGALRVLR-LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred CHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC----CCCCeeHHHHHHHHHHhCCChHHHHHHHhhC------CCCCchhHHHHHHHHhcCCChHHHHHHHhhcCC---
Q 040576 216 EDG----PVWDLVTWNSMIDGYVKNREVGFARELFDFM------PERDIFTWNSMISGYVDVGDMEAANGLFDLMPF--- 282 (641)
Q Consensus 216 ~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 282 (641)
++| ..||..+|+.+|.+|++.|++++|.++|++| ..||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 875 4789999999999999999999999999999 368999999999999999999999999999985
Q ss_pred -CCchHHHHHHHHHHhcCChHHHHHHHHhc----CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040576 283 -RDVVSWNCMIDGYAKIGNVTSARNCFDRM----CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSV 357 (641)
Q Consensus 283 -~~~~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 357 (641)
++..+|+.+|.+|++.|++++|.++|++| ..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45799999999999999999999999999 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCCh
Q 040576 358 LTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMT----EKNVVSWNSMIMGYGMHGQG 433 (641)
Q Consensus 358 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~ 433 (641)
+.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999997 38999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----h-------------------ccHHHHHHHHHHhHHhhCCCCchHH
Q 040576 434 EKALEMFMEMEKRGPTPNDATFICVLSACTH----A-------------------GMVLEGWWYFDLMQRIYKIEPKVEH 490 (641)
Q Consensus 434 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p~~~~ 490 (641)
++|.++|.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+ .|+.||..+
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T 849 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHH
Confidence 9999999999999999999999999876542 1 123679999999999 899999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040576 491 YGCMVDLLGRAGLMRDSEELVSKL---PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
|+.++.++++.+..+.+..+++.| +..|+..+|++++.++.+. .++|..+++.+.+.+
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999999999999988 4567788999999998432 468999999998865
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-61 Score=524.76 Aligned_cols=425 Identities=25% Similarity=0.381 Sum_probs=405.2
Q ss_pred chHHHHHHhhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCChHHHHHhhhcCCCCCcccHHHHHHHHHcCCC
Q 040576 57 SHPILQKLESCSTVKEFHQIHTQLLVSGLSQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQEPDAFMCNTIMKSFLMLND 136 (641)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 136 (641)
++.++..+...++.+.+.++|..|.+.|+.||..++|.++. +|++.|+++.|.++|++|+.||.++||.+|.+|++.|+
T Consensus 126 ~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~-~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~ 204 (697)
T PLN03081 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL-MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN 204 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH-HHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcC
Confidence 44455555566677888999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 040576 137 PFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFE 216 (641)
Q Consensus 137 ~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 216 (641)
+++|+++|+ .|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++||++|+++|++++|.++|+
T Consensus 205 ~~~A~~lf~-~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 205 YREAFALFR-EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred HHHHHHHHH-HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhC----CCCCchhHHHHHHHHhcCCChHHHHHHHhhcCC----CCchHH
Q 040576 217 DGPVWDLVTWNSMIDGYVKNREVGFARELFDFM----PERDIFTWNSMISGYVDVGDMEAANGLFDLMPF----RDVVSW 288 (641)
Q Consensus 217 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~ 288 (641)
+|.++|+++||++|.+|++.|++++|+++|++| ..||..||+.++.+|++.|++++|.++++.|.+ +|..+|
T Consensus 284 ~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 999999999999999999999999999999999 789999999999999999999999999999974 678999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 040576 289 NCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVID 368 (641)
Q Consensus 289 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 368 (641)
++|+++|+++|++++|.++|++|.++|+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.++
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040576 369 IGQWIHSYIQK-CRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMT-EKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKR 446 (641)
Q Consensus 369 ~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 446 (641)
+|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|. +|+..+|++|+.+|...|+.+.|..+++++.+.
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 99999999986 6999999999999999999999999999999997 589999999999999999999999999999754
Q ss_pred CCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC
Q 040576 447 GPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP 486 (641)
Q Consensus 447 g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 486 (641)
.|+ ..+|..+++.|++.|++++|.++++.|.+ .|+..
T Consensus 524 --~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 524 --GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred --CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 554 66999999999999999999999999998 77653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-31 Score=307.08 Aligned_cols=501 Identities=12% Similarity=0.051 Sum_probs=326.9
Q ss_pred HhhcCCChHHHHHhhhcCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchh
Q 040576 99 LCTSLSSVSLSVLFFDGIQ---EPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLRE 175 (641)
Q Consensus 99 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 175 (641)
.+.+.|+++.|...|+++. +.+...|..+...+...|++++|++.|. .+.... +.+......++..+.+.|++++
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLE-TAAQLD-PELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHH-HHHhhC-CcchhhHHHHHHHHHhcCCHHH
Confidence 3444455555555554431 2233344444444455555555555554 332221 1112233344445555555555
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCeeHHHHHHHHHHhCCChHHHHHHHhhC---
Q 040576 176 GKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDG---PVWDLVTWNSMIDGYVKNREVGFARELFDFM--- 249 (641)
Q Consensus 176 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 249 (641)
|..+++.+.+.. +.+..++..+...|...|++++|.+.|++. .+.+...+..+...+...|++++|.+.|+++
T Consensus 450 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 450 ALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555555555432 344556666666666666666666666652 2334445556666666666666666666666
Q ss_pred CCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCC---CchHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHH
Q 040576 250 PERDIFTWNSMISGYVDVGDMEAANGLFDLMPFR---DVVSWNCMIDGYAKIGNVTSARNCFDRMC---MRNVVSWNILL 323 (641)
Q Consensus 250 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li 323 (641)
.+.+..++..+...+.+.|+.++|...++++.+. +...+..++..|.+.|++++|..+++.+. ..+...|..+.
T Consensus 529 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 608 (899)
T TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLG 608 (899)
T ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2234456666666666667777777666666432 24555666677777777777777777663 23455677777
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 040576 324 ALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMD 403 (641)
Q Consensus 324 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 403 (641)
.+|...|++++|...|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..++..+...|+++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777776542 2344556666667777777777777777776643 345666777777777777777
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 404 LARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 404 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
+|.++++.+.+ .+...+..++..+...|++++|...|+++...+ |+..++..+..++.+.|++++|.+.++.+.+
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777664 345566777777777888888888888777753 4446666677777788888888888887776
Q ss_pred hhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 040576 481 IYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL--PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYV 558 (641)
Q Consensus 481 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 558 (641)
..+.+...+..++..|.+.|++++|.+.|+++ ..++++..+..+...+...|+ .+|+..++++++..|+++..+.
T Consensus 765 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 765 --THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred --hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 23445677777888888888888888888876 223456677778888888888 7788888888888888888888
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhcccc
Q 040576 559 LLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRRDVA 635 (641)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 635 (641)
.++.+|...|++++|.+.++++ .+..|.+.. ++..++.+..+.++..++..
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a------------------------~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKA------------------------VNIAPEAAA--IRYHLALALLATGRKAEARK 892 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH------------------------HhhCCCChH--HHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888888888 667788888 99999998888877666543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.9e-31 Score=300.78 Aligned_cols=557 Identities=13% Similarity=0.046 Sum_probs=290.8
Q ss_pred hcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCChHHHHHhhhcCC---CCCcccHHHHHHHHHcCCCchhHHH
Q 040576 66 SCSTVKEFHQIHTQLLVSGLSQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQ---EPDAFMCNTIMKSFLMLNDPFGALS 142 (641)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 142 (641)
..++.+.+...+..+.+.+ |+.......+..++...|+++.|...|+... +.+...+..+...+...|++++|..
T Consensus 273 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 350 (899)
T TIGR02917 273 QKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIA 350 (899)
T ss_pred HhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 3455666666665555443 2222122222224455666666666666541 2234445555556666666666666
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---
Q 040576 143 FYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGP--- 219 (641)
Q Consensus 143 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 219 (641)
.+. .+... .+.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.|++..
T Consensus 351 ~~~-~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 427 (899)
T TIGR02917 351 TLS-PALGL-DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD 427 (899)
T ss_pred HHH-HHHhc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Confidence 665 44332 12344455555566666666666666666655543 2244455555555666666666666665422
Q ss_pred CCCeeHHHHHHHHHHhCCChHHHHHHHhhC---CCCCchhHHHHHHHHhcCCChHHHHHHHhhcCC--C-CchHHHHHHH
Q 040576 220 VWDLVTWNSMIDGYVKNREVGFARELFDFM---PERDIFTWNSMISGYVDVGDMEAANGLFDLMPF--R-DVVSWNCMID 293 (641)
Q Consensus 220 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~ 293 (641)
+.....+..++..+.+.|++++|..+++++ .+.+..++..+...+...|++++|.+.|+++.+ | +...+..+..
T Consensus 428 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 507 (899)
T TIGR02917 428 PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507 (899)
T ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 222334444555555666666666665555 223444555555556666666666666655542 1 2344455555
Q ss_pred HHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 040576 294 GYAKIGNVTSARNCFDRMCM---RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIG 370 (641)
Q Consensus 294 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 370 (641)
.+...|++++|.+.|+++.. .+..++..+...+.+.|++++|...++++...+ +.+...+..+...+...|++++|
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 55555666666665555522 234455555555555556666655555555432 22333444555555555555555
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 040576 371 QWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRG 447 (641)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 447 (641)
..+++.+.+.. +.+...+..+..+|...|++++|...|+.+.+ .+...+..++.+|...|++++|...|+++.+..
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55555555432 33445555555555555555555555555432 233445555555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 040576 448 PTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPALWGAL 526 (641)
Q Consensus 448 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l 526 (641)
+.+..++..+...+...|++++|.++++.+.. . .+.+...+..++..+.+.|++++|.+.|+++ ...|+...+..+
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 742 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK-Q-HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL 742 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHH
Confidence 11344555555555555555555555555554 1 2233444555555555555555555555554 233444445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceE---EE--Eee----
Q 040576 527 LSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSS---LV--HPG---- 597 (641)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~--~~~---- 597 (641)
..++...|+.++|...++++++..|+++..+..++.+|...|++++|.+.++++.+.++....... |+ ...
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A 822 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRA 822 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHH
Confidence 555555555555555555555555555555555555555555555555555555444322111000 00 000
Q ss_pred eeecccccccCCCCchhhHHHHHHHHHHHHHhhhccc
Q 040576 598 EFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRRDV 634 (641)
Q Consensus 598 ~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~ 634 (641)
.....+.....|++.. ++..++.+...+++..+++
T Consensus 823 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~ 857 (899)
T TIGR02917 823 LEYAEKALKLAPNIPA--ILDTLGWLLVEKGEADRAL 857 (899)
T ss_pred HHHHHHHHhhCCCCcH--HHHHHHHHHHHcCCHHHHH
Confidence 0001111466788888 8888888887776665543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.9e-23 Score=239.57 Aligned_cols=512 Identities=11% Similarity=0.056 Sum_probs=285.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCChHHHHHhhhcCC--CCCc-ccH-------------
Q 040576 61 LQKLESCSTVKEFHQIHTQLLVSGLSQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQ--EPDA-FMC------------- 124 (641)
Q Consensus 61 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~------------- 124 (641)
.+.-...++.+.+.+.+..+.... +.++........ ++...|+.++|.+.+++.. .|+. ..+
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~-~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFR-LLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 334456678889988888887553 234555555555 7789999999999999873 2332 222
Q ss_pred ---HHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcch-HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHH
Q 040576 125 ---NTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYT-FPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIH 200 (641)
Q Consensus 125 ---~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 200 (641)
..+.+.+...|++++|+..|+ ..... -+|+... ...........|+.++|...++.+.+.. +.+...+..+..
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~-~~l~~-~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYD-KLFNG-APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHH-HHccC-CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 223346788999999999999 66543 2333321 1122222335689999999999999875 446778889999
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCee------HH-----------------HHHHHHHHhCCChHHHHHHHhhCC--CCCch
Q 040576 201 MYSVCGEVLDARKVFEDGPVWDLV------TW-----------------NSMIDGYVKNREVGFARELFDFMP--ERDIF 255 (641)
Q Consensus 201 ~~~~~g~~~~A~~~~~~~~~~~~~------~~-----------------~~li~~~~~~g~~~~A~~~~~~m~--~~~~~ 255 (641)
.+...|+.++|++.|+++...... .| ...+..+-.....+.|...+.++. .+|..
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999875321100 01 000000000111122222222210 00110
Q ss_pred -hHHHHHHHHhcCCChHHHHHHHhhcCC--C-CchHHHHHHHHHHhcCChHHHHHHHHhcCC--CCc---chHHH-----
Q 040576 256 -TWNSMISGYVDVGDMEAANGLFDLMPF--R-DVVSWNCMIDGYAKIGNVTSARNCFDRMCM--RNV---VSWNI----- 321 (641)
Q Consensus 256 -~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~----- 321 (641)
........+...|++++|+..|++..+ | +..++..+...|.+.|++++|+..|++..+ |+. ..|..
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 001112333444555555555544432 2 234444444555555555555555544421 110 01111
Q ss_pred -------HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHH-----
Q 040576 322 -------LLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLS----- 389 (641)
Q Consensus 322 -------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----- 389 (641)
....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.. +.+...+
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 1223344455555555555544421 1122333344444445555555555555444432 1122222
Q ss_pred -------------------------------------HHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHH
Q 040576 390 -------------------------------------TSLLTMYAKCGVMDLARNVFDNMTE--K-NVVSWNSMIMGYGM 429 (641)
Q Consensus 390 -------------------------------------~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 429 (641)
..+...+...|++++|.+.|++..+ | +...+..+...|.+
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 2334445555666666666665543 2 33445555566666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCch---------HHHHHHHHHHhh
Q 040576 430 HGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV---------EHYGCMVDLLGR 500 (641)
Q Consensus 430 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~li~~~~~ 500 (641)
.|++++|...++++.+.... +...+..+...+...|+.++|...++.+.. ....++. ..+..+...+..
T Consensus 508 ~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~-~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPR-AQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCc-hhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666666666665553211 223333333344555666666666655432 1111111 112234556677
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 501 AGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 501 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
.|+.++|+++++.-+ +++..+..+...+...|++++|+..|+++++.+|+++..+..++.+|...|++++|++.+++.
T Consensus 586 ~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 586 SGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 788888888777543 344566777788888999999999999999999999989999999999999999999999887
Q ss_pred hhC
Q 040576 581 KEK 583 (641)
Q Consensus 581 ~~~ 583 (641)
.+.
T Consensus 664 l~~ 666 (1157)
T PRK11447 664 PAT 666 (1157)
T ss_pred hcc
Confidence 543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=4.1e-23 Score=236.80 Aligned_cols=512 Identities=10% Similarity=0.014 Sum_probs=367.5
Q ss_pred HHHHhhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCChHHHHHhhhcCC---CCCcccHHHHHHHHHcCCCc
Q 040576 61 LQKLESCSTVKEFHQIHTQLLVSGLSQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQ---EPDAFMCNTIMKSFLMLNDP 137 (641)
Q Consensus 61 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 137 (641)
..++...++.+++.+.+..+.+.. +|+......+...+....|+.++|.+.|+++. +.+...+..+...+...|+.
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 446677889999999999888653 34433333333323345689999999999873 33566788888999999999
Q ss_pred hhHHHHHHHHHHhcCC----------------CCCcc---hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHH
Q 040576 138 FGALSFYYEKMMAKFV----------------EHNHY---TFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSL 198 (641)
Q Consensus 138 ~~A~~~~~~~m~~~~~----------------~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 198 (641)
++|+..|+ .+..... .++.. .+...+..+-.......|...+..+.+....|+.. ...+
T Consensus 198 ~eAl~~l~-~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~ 275 (1157)
T PRK11447 198 DEGFAVLE-QMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQ 275 (1157)
T ss_pred HHHHHHHH-HHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHH
Confidence 99999998 6644311 00111 11111221222222344555555544433333322 2234
Q ss_pred HHHHHhcCCHHHHHHHHhcC---CCCCeeHHHHHHHHHHhCCChHHHHHHHhhCC--CCCch---hHH------------
Q 040576 199 IHMYSVCGEVLDARKVFEDG---PVWDLVTWNSMIDGYVKNREVGFARELFDFMP--ERDIF---TWN------------ 258 (641)
Q Consensus 199 i~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~---~~~------------ 258 (641)
...+...|++++|...|++. .+.+...+..+...+.+.|++++|+..|++.. .|+.. .|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 56677899999999999874 34577788999999999999999999999883 33321 111
Q ss_pred HHHHHHhcCCChHHHHHHHhhcCCC---CchHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHHcCCh
Q 040576 259 SMISGYVDVGDMEAANGLFDLMPFR---DVVSWNCMIDGYAKIGNVTSARNCFDRMCM---RNVVSWNILLALYVRCKDY 332 (641)
Q Consensus 259 ~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 332 (641)
.....+.+.|++++|+..|+++.+. +...+..+...+...|++++|++.|++... .+...+..+...|. .++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 2234567899999999999998753 366777889999999999999999999843 34456666777664 4678
Q ss_pred HHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 040576 333 CECLRLFDRMIRGDAK--------PNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDL 404 (641)
Q Consensus 333 ~~A~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 404 (641)
++|+..++.+...... .....+..+...+...|++++|...++...+.. +.+..++..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 9999888765432100 011234456677888999999999999998865 4466777889999999999999
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhhccHHHHH
Q 040576 405 ARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDA---------TFICVLSACTHAGMVLEGW 472 (641)
Q Consensus 405 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~g~~~~a~ 472 (641)
|...|+++.+ .+...+..+...+...++.++|+..++++......++.. .+..+...+...|+.++|.
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 9999998753 345556666666778899999999998865432222221 1234566788889999999
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040576 473 WYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 473 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
++++ . .+.+...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|+.++|+..++++.+..
T Consensus 594 ~~l~---~---~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 594 ALLR---Q---QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHH---h---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 9876 2 2345566778899999999999999999987 3334 46688889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 551 PRDPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 551 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
|+++..+..++.++...|++++|.++++++...
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999989999999999999999999999998543
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.7e-22 Score=194.70 Aligned_cols=434 Identities=12% Similarity=0.117 Sum_probs=333.4
Q ss_pred HHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 040576 128 MKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGE 207 (641)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 207 (641)
..-.-+.|++.+|.+.-. |.-..-+.+..+...+-..+....+.+....--....+.. ..-..+|+.+.+.+-..|+
T Consensus 55 ah~~yq~gd~~~a~~h~n--mv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 55 AHRLYQGGDYKQAEKHCN--MVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHhccCHHHHHHHHh--HhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhch
Confidence 334446677777777654 3222222233333333344444444444333322333322 3345678888888888888
Q ss_pred HHHHHHHHhcCC---CCCeeHHHHHHHHHHhCCChHHHHHHHhhCC--CCCchh-HHHHHHHHhcCCChHHHHHHHhhcC
Q 040576 208 VLDARKVFEDGP---VWDLVTWNSMIDGYVKNREVGFARELFDFMP--ERDIFT-WNSMISGYVDVGDMEAANGLFDLMP 281 (641)
Q Consensus 208 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~ 281 (641)
+++|+..++.+. +..+..|..+..++...|+.+.|.+.|.... .|+... .+.+.......|++++|...|.+.+
T Consensus 132 ~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi 211 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI 211 (966)
T ss_pred HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH
Confidence 888888887643 3456678888888888888888888887773 344332 2334455566788888888888776
Q ss_pred C--CC-chHHHHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 040576 282 F--RD-VVSWNCMIDGYAKIGNVTSARNCFDRMCMRNV---VSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNE-ASL 354 (641)
Q Consensus 282 ~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~ 354 (641)
+ |. ..+|+.|...+-..|++..|+..|++..+-|+ ..|-.|...|...+.+++|+..+.+... ..|+. ..+
T Consensus 212 ~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~ 289 (966)
T KOG4626|consen 212 ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAH 289 (966)
T ss_pred hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhc
Confidence 5 33 67888898899999999999999998855443 5788888899999999999999988876 35654 467
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcC
Q 040576 355 MSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHG 431 (641)
Q Consensus 355 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 431 (641)
..+...|...|.+|.|+..+++.++.. +.-...|+.|..++-..|++.+|...|.+... ....+.+.|...|...|
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 777777889999999999999998864 22367899999999999999999999998874 34568899999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHH
Q 040576 432 QGEKALEMFMEMEKRGPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEE 509 (641)
Q Consensus 432 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 509 (641)
.+++|..+|....+ +.|. ...++.|...|-++|++++|+..+++..+ +.|+ ...|+.+...|...|+.+.|+.
T Consensus 369 ~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 369 KIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred cchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 99999999999887 4555 35788999999999999999999999987 8898 6889999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHH
Q 040576 510 LVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDE 572 (641)
Q Consensus 510 ~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 572 (641)
.+.+. ...|. ....+.|...|...|++.+|+..|+.+++++|+.+.+|..++-++---.+|.+
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99987 56676 45788999999999999999999999999999999999999888766666654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=6.5e-20 Score=200.95 Aligned_cols=524 Identities=9% Similarity=0.006 Sum_probs=313.5
Q ss_pred hhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCChHHHHHhhhcCC--CC-CcccHHHHHHHHHcCCCchhHH
Q 040576 65 ESCSTVKEFHQIHTQLLVSGLSQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQ--EP-DAFMCNTIMKSFLMLNDPFGAL 141 (641)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~ 141 (641)
...++.+++...+.+.++..... +.+...+.. +|...|+.++|+..+++.- .| |...+.. +..+ +++.+|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~-~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~-La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDN-IPLTLYLAE-AYRHFGHDDRARLLLEDQLKRHPGDARLERS-LAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHH-HHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-HHHh---ccChhHH
Confidence 34488888888888887664322 444444444 8899999999999999863 23 3333333 3322 7888888
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHH-----hcCCCchhHHHHHHHHHHhCCCCChhHHHHH-HHHHHhcCCHHHHHHHH
Q 040576 142 SFYYEKMMAKFVEHNHYTFPLLGKVC-----AGIRSLREGKKVHARIVKCGFELDLFVRNSL-IHMYSVCGEVLDARKVF 215 (641)
Q Consensus 142 ~~~~~~m~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~ 215 (641)
..|+ .+.... +-+..++..+.... .+-.+.++|.+.++ .......|+..+.... ...|.+.|++++|++.+
T Consensus 129 ~~ye-~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVE-ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHH-HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 8888 555531 22233333333320 01122344444444 3333233334433333 56666666666666666
Q ss_pred hcCCCC---CeeHHHHHHHHHHh-CCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCC-----CC--
Q 040576 216 EDGPVW---DLVTWNSMIDGYVK-NREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPF-----RD-- 284 (641)
Q Consensus 216 ~~~~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~-- 284 (641)
.++.+. +...+..+..+|.+ .++ +++..+++...+.|...+..+...+.+.|+.++|.++++.+.. |+
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 553321 22224444445555 244 5555555443334555555555666666666666655555431 10
Q ss_pred ----------------------------chHHHHHHHHHHhc--------------------------------------
Q 040576 285 ----------------------------VVSWNCMIDGYAKI-------------------------------------- 298 (641)
Q Consensus 285 ----------------------------~~~~~~li~~~~~~-------------------------------------- 298 (641)
....-.++..+.+.
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 00011113333444
Q ss_pred -------------------------CChHHHHHHHHhcCC--CCc----chHHHHHHHHHHcCC---hHHHHHH------
Q 040576 299 -------------------------GNVTSARNCFDRMCM--RNV----VSWNILLALYVRCKD---YCECLRL------ 338 (641)
Q Consensus 299 -------------------------~~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~---~~~A~~~------ 338 (641)
|+.++|.++|+.... ++. ..-+-++..|.+.+. ..++..+
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 444444444444421 111 112233444444433 2222111
Q ss_pred ----------------HHHHHHC-CC-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 040576 339 ----------------FDRMIRG-DA-KP--NEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAK 398 (641)
Q Consensus 339 ----------------~~~m~~~-g~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 398 (641)
++..... +. ++ +...|..+..++.. ++.++|...+....... |+......+...+..
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQ 521 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHH
Confidence 1111110 11 12 33444444444444 67777777666665543 444433344555567
Q ss_pred cCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHH
Q 040576 399 CGVMDLARNVFDNMTE--KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPND-ATFICVLSACTHAGMVLEGWWYF 475 (641)
Q Consensus 399 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~ 475 (641)
.|++++|...|+++.. ++...+..+..++.+.|+.++|...+++..+.+ |+. ..+..+...+...|++++|...+
T Consensus 522 ~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 522 VEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8889999888887664 444566677778888899999999998888764 333 33333444455668999999999
Q ss_pred HHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 476 DLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 476 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
++..+ ..|+...+..+..++.+.|++++|+..+++. ...|+ ...+..+..++...|+.++|+..++++++++|++
T Consensus 600 ~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 600 TRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 88877 5577778888888899999999999988887 34454 5567777778888999999999999999999999
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhc
Q 040576 554 PGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRR 632 (641)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~ 632 (641)
+..+..++.+|...|++++|...+++. .++.|++.. +....+++...-...++
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~A------------------------l~l~P~~a~--i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLV------------------------IDDIDNQAL--ITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH------------------------HhcCCCCch--hhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999988 677788888 77777776655443333
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1e-20 Score=207.11 Aligned_cols=492 Identities=9% Similarity=-0.019 Sum_probs=346.0
Q ss_pred hcCCChHHHHHhhhcC---CCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHH
Q 040576 101 TSLSSVSLSVLFFDGI---QEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGK 177 (641)
Q Consensus 101 ~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 177 (641)
...|++++|...|+.. .+.+...+..+.+.|...|++++|+..++ ...+. .|+...|..++..+ ++..+|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~-kAv~l--dP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLE-DQLKR--HPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH-HHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence 4459999999999986 34457788999999999999999999999 55543 55555555554333 8889999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHH--------HHhcCCHHHHHHHHhcCCCCC--eeHHH-HHHHHHHhCCChHHHHHHH
Q 040576 178 KVHARIVKCGFELDLFVRNSLIHM--------YSVCGEVLDARKVFEDGPVWD--LVTWN-SMIDGYVKNREVGFARELF 246 (641)
Q Consensus 178 ~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~~~ 246 (641)
.+++++.+.. +-+..++..+... |.+.+...++++ .+...++ ..+.. .+...|.+.|++++|++++
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999999875 3356677666666 888777777777 3333343 44334 4489999999999999999
Q ss_pred hhCC--CCC-chhHHHHHHHHhc-CCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCcc
Q 040576 247 DFMP--ERD-IFTWNSMISGYVD-VGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCM-----RNVV 317 (641)
Q Consensus 247 ~~m~--~~~-~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~ 317 (641)
+++. .|. ..-...+..+|.. .++ +.+..++....+.+..+...+.+.|.+.|+.++|.+.++++.. |...
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 9993 333 3345566667777 477 8888888876667889999999999999999999999998821 1100
Q ss_pred h------------------------------HHHHHHHHHHc--------------------------------------
Q 040576 318 S------------------------------WNILLALYVRC-------------------------------------- 329 (641)
Q Consensus 318 ~------------------------------~~~li~~~~~~-------------------------------------- 329 (641)
+ .-.++..+.+.
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 0 00112222333
Q ss_pred -------------------------CChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCH---HHHHHH------
Q 040576 330 -------------------------KDYCECLRLFDRMIRG--DAKPNEASLMSVLTACANMGVI---DIGQWI------ 373 (641)
Q Consensus 330 -------------------------g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~---~~a~~~------ 373 (641)
|+.++|.++|+..... ...++......++..+.+.+.+ ..+..+
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 3444444444444331 0112222233445555444431 111111
Q ss_pred ----------------HHHHHHc-CC-CC--chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcC
Q 040576 374 ----------------HSYIQKC-RI-KP--DVLLSTSLLTMYAKCGVMDLARNVFDNMTE--KNVVSWNSMIMGYGMHG 431 (641)
Q Consensus 374 ----------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 431 (641)
....... +. ++ +...+..+..++.. ++.++|...|.+... |+......+...+...|
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCC
Confidence 1111111 11 23 45566666666665 677778887766654 44333223344446889
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHH
Q 040576 432 QGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEEL 510 (641)
Q Consensus 432 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 510 (641)
++++|...|+++... .|+...+..+..++.+.|+.++|..+++...+ ..|+ ...+..+...+.+.|++++|+..
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~---l~P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ---RGLGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999987654 44555566677788889999999999999887 2343 33344444455566999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccC
Q 040576 511 VSKL-PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAV 589 (641)
Q Consensus 511 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 589 (641)
+++. ...|+...+..+..++.+.|++++|+..++++++++|+++..+..++.++...|++++|+..+++.
T Consensus 599 ~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A--------- 669 (987)
T PRK09782 599 LTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA--------- 669 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------
Confidence 9987 456788889999999999999999999999999999999999999999999999999999999998
Q ss_pred ceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhccc
Q 040576 590 GSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRRDV 634 (641)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~ 634 (641)
.+++|++.. ++..|+.+...+++..++.
T Consensus 670 ---------------L~l~P~~~~--a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 670 ---------------HKGLPDDPA--LIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred ---------------HHhCCCCHH--HHHHHHHHHHHCCCHHHHH
Confidence 788999999 9999999999888776654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=6.7e-23 Score=198.89 Aligned_cols=409 Identities=11% Similarity=0.097 Sum_probs=335.9
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCeeHHHHHHHHHHhCCCh
Q 040576 163 LGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFED---GPVWDLVTWNSMIDGYVKNREV 239 (641)
Q Consensus 163 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~ 239 (641)
+..-.-+.|++++|++.-..+-... +.+....-.+-..+....+++....--.. ..+.-..+|..+.+.+-..|++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3344556789999987665444332 22222333333445555555554433222 2234556899999999999999
Q ss_pred HHHHHHHhhCC--CC-CchhHHHHHHHHhcCCChHHHHHHHhhcCCCCc---hHHHHHHHHHHhcCChHHHHHHHHhcCC
Q 040576 240 GFARELFDFMP--ER-DIFTWNSMISGYVDVGDMEAANGLFDLMPFRDV---VSWNCMIDGYAKIGNVTSARNCFDRMCM 313 (641)
Q Consensus 240 ~~A~~~~~~m~--~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~ 313 (641)
++|+.+++.++ +| ....|..+..++...|+.+.|.+.|.+..+-++ .+.+.+...+-..|++.+|...+.+..+
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 99999999993 33 467899999999999999999999999987554 3344566677778999999999988744
Q ss_pred --C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHH
Q 040576 314 --R-NVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPN-EASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLS 389 (641)
Q Consensus 314 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 389 (641)
| -.+.|+.|...+-..|+...|+.-|++... +.|+ ...|-.+...|...+.++.|...+....... +....++
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~ 289 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAH 289 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhc
Confidence 3 346899999999999999999999999987 4565 3578889999999999999999988887653 3456778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhh
Q 040576 390 TSLLTMYAKCGVMDLARNVFDNMTE--K-NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN-DATFICVLSACTHA 465 (641)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 465 (641)
..+...|-..|.++.|+..|++..+ | -..+|+.|..++...|+..+|++.|.+.... .|+ ....+.|...+...
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQ 367 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHh
Confidence 8888889999999999999999885 3 3478999999999999999999999999885 555 45888999999999
Q ss_pred ccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 040576 466 GMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIV 542 (641)
Q Consensus 466 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 542 (641)
|.+++|..+|....+ +.|. ....+.|...|-.+|++++|+..+++. .++|+ ...++.+...|...|+++.|...
T Consensus 368 ~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 368 GKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred ccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 999999999999977 6676 567889999999999999999999987 67888 45899999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 543 AQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 543 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
+.+++..+|.-++++..|+.+|-.+|+..+|++-+++.
T Consensus 445 y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 445 YTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred HHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999998
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.8e-19 Score=194.28 Aligned_cols=416 Identities=11% Similarity=-0.014 Sum_probs=281.6
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCeeHHHHHHHHHHhC
Q 040576 160 FPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDG---PVWDLVTWNSMIDGYVKN 236 (641)
Q Consensus 160 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~ 236 (641)
+......+.+.|+++.|...|+..++. .|+...|..+..+|.+.|++++|++.++.. .+.+..+|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 344455666778888888888877764 456677777778888888888888877763 344555777777788888
Q ss_pred CChHHHHHHHhhCC---CCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCC
Q 040576 237 REVGFARELFDFMP---ERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCM 313 (641)
Q Consensus 237 g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 313 (641)
|++++|+.-|.... ..+......++..+........+...++.-. .+...+..+.. |....+......-++....
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 88888877665541 1111111112211111111122333332211 11122222222 2221122222221222111
Q ss_pred CCc---chHHHHHHH---HHHcCChHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 040576 314 RNV---VSWNILLAL---YVRCKDYCECLRLFDRMIRGD-AKPN-EASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPD 385 (641)
Q Consensus 314 ~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 385 (641)
.+. ..+..+... ....+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++...+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 111 111111111 123478999999999998764 2343 4467777778888999999999999998864 334
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040576 386 VLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSAC 462 (641)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 462 (641)
...|..+..++...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+... .+...+..+...+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHH
Confidence 66788888999999999999999998764 4567899999999999999999999999988642 2456777788889
Q ss_pred HhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhc
Q 040576 463 THAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGP-A-------LWGALLSACSTH 533 (641)
Q Consensus 463 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~ 533 (641)
.+.|++++|+..|+...+ ..+.+...+..+..++...|++++|++.|++. ...|+. . .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999987 23334778889999999999999999999985 333321 1 112222234457
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 534 SNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 534 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
|++++|...++++++++|++...+..++.++...|++++|++.+++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999989999999999999999999999998543
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.2e-19 Score=185.81 Aligned_cols=314 Identities=13% Similarity=0.090 Sum_probs=235.3
Q ss_pred HHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccC
Q 040576 292 IDGYAKIGNVTSARNCFDRMCM---RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPN---EASLMSVLTACANMG 365 (641)
Q Consensus 292 i~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g 365 (641)
...+...|++++|...|.++.. .+..+|..+...+...|++++|..+++.+...+..++ ...+..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3345566777777777777733 2344677777888888888888888888876532222 245667777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--C------hhHHHHHHHHHHHcCChHHHH
Q 040576 366 VIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEK--N------VVSWNSMIMGYGMHGQGEKAL 437 (641)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~~~~~~~A~ 437 (641)
+++.|..+|..+.+.. +.+..++..++.+|.+.|++++|.+.++.+.+. + ...|..++..+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888888888887653 445677888888888888888888888887642 1 124566778888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 040576 438 EMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK--VEHYGCMVDLLGRAGLMRDSEELVSKL- 514 (641)
Q Consensus 438 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~- 514 (641)
..|+++.+.. +.+...+..+...+.+.|++++|.++|+++.. . .|+ ...+..++.+|.+.|++++|.+.++++
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE-Q--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998763 22455777888899999999999999999987 2 343 456788999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---cCChHHHHHHHHHhhhCCCcccCce
Q 040576 515 PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYAS---EGKWDEVENLRRIMKEKELEKAVGS 591 (641)
Q Consensus 515 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 591 (641)
...|+...+..++..+...|++++|..+++++++..|+++ .+..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~- 354 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR- 354 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC-
Confidence 4467777778888899999999999999999999999876 45555555443 569999999999999999988887
Q ss_pred EEE-EeeeeecccccccCCCCch
Q 040576 592 SLV-HPGEFASESIVENCPPHRK 613 (641)
Q Consensus 592 ~~~-~~~~~~~~~~~~~~p~~~~ 613 (641)
|+ .-..++..+..-.+|.++.
T Consensus 355 -~~c~~cg~~~~~~~~~c~~c~~ 376 (389)
T PRK11788 355 -YRCRNCGFTARTLYWHCPSCKA 376 (389)
T ss_pred -EECCCCCCCCccceeECcCCCC
Confidence 33 2233333322344555543
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.2e-17 Score=183.47 Aligned_cols=393 Identities=9% Similarity=-0.065 Sum_probs=237.6
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCeeHHHHHHHHHHh
Q 040576 159 TFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFED---GPVWDLVTWNSMIDGYVK 235 (641)
Q Consensus 159 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~ 235 (641)
...-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++ ..+.+...+..++..+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444445556666666666666665422 33444566666666666666666666665 333344555566666666
Q ss_pred CCChHHHHHHHhhC--CCC-CchhHHHHHHHHhcCCChHHHHHHHhhcCC--CC-chHHHHHHHHHHhcCChHHHHHHHH
Q 040576 236 NREVGFARELFDFM--PER-DIFTWNSMISGYVDVGDMEAANGLFDLMPF--RD-VVSWNCMIDGYAKIGNVTSARNCFD 309 (641)
Q Consensus 236 ~g~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~ 309 (641)
.|++++|+..+++. ..| +.. +..+..++...|+.++|+..++++.+ |+ ...+..+..++...+..++|++.++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 66666666666665 222 223 55555555556666666665555543 22 2333334444444455555555554
Q ss_pred hcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HccCCH---HHHHHHHHHHHHc-
Q 040576 310 RMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTAC-----ANMGVI---DIGQWIHSYIQKC- 380 (641)
Q Consensus 310 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~g~~---~~a~~~~~~~~~~- 380 (641)
.... ++..... ... .....++... ...+++ +.|...++.+.+.
T Consensus 175 ~~~~-~p~~~~~-------------------------l~~--~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 175 DANL-TPAEKRD-------------------------LEA--DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred hCCC-CHHHHHH-------------------------HHH--HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 4432 1110000 000 0000111111 111122 4556666666543
Q ss_pred CCCCchh-HH----HHHHHHHHhcCCHHHHHHHHhhcCCCC---hh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-
Q 040576 381 RIKPDVL-LS----TSLLTMYAKCGVMDLARNVFDNMTEKN---VV-SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP- 450 (641)
Q Consensus 381 ~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p- 450 (641)
...|+.. .+ ...+.++...|++++|+..|+.+.+.+ +. .-..+..+|...|++++|+..|+++.+.....
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 1122211 11 111223446678888888888877532 11 12225667888888888888888877643211
Q ss_pred --CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhC----------CCCc---hHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 040576 451 --NDATFICVLSACTHAGMVLEGWWYFDLMQRIYK----------IEPK---VEHYGCMVDLLGRAGLMRDSEELVSKL- 514 (641)
Q Consensus 451 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~- 514 (641)
.......+..++...|++++|.++++.+..... -.|+ ...+..++..+...|++++|+++++++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123455666677888899999888888876210 1123 234566788899999999999999987
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 515 P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 515 ~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
. .+.+...+..+...+...|++++|+..++++++++|+++..+..++..+.+.|++++|..+++++.
T Consensus 387 ~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 387 YNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 234466888899999999999999999999999999999999999999999999999999999993
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=2.1e-17 Score=178.26 Aligned_cols=436 Identities=10% Similarity=-0.019 Sum_probs=302.4
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 040576 124 CNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYS 203 (641)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 203 (641)
+......+.+.|++++|+..|+ .... +.|+...|..+..++...|++++|...++..++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~-~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYS-KAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4456678888999999999999 5444 46777788888889999999999999999988864 335668888999999
Q ss_pred hcCCHHHHHHHHhcCCC---CCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhc
Q 040576 204 VCGEVLDARKVFEDGPV---WDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLM 280 (641)
Q Consensus 204 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 280 (641)
..|++++|..-|..... .+......++.-+........+...++. .+++...+..+...+ .....+....-+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILET-KPENLPSVTFVGNYL-QSFRPKPRPAGLEDS 283 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHH-HHccCCcchhhhhcc
Confidence 99999999887764321 1211112222222211112233333332 222223333222222 111111111112211
Q ss_pred CCCC---chHHHHHHHH---HHhcCChHHHHHHHHhcCCC------CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 040576 281 PFRD---VVSWNCMIDG---YAKIGNVTSARNCFDRMCMR------NVVSWNILLALYVRCKDYCECLRLFDRMIRGDAK 348 (641)
Q Consensus 281 ~~~~---~~~~~~li~~---~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 348 (641)
.+.+ ...+..+... ....+++++|.+.|+..... +...|+.+...+...|++++|+..|++..+. .
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~ 361 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--D 361 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C
Confidence 1111 1111111111 12347899999999987432 3456888888999999999999999999874 4
Q ss_pred CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHH
Q 040576 349 PN-EASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMI 424 (641)
Q Consensus 349 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 424 (641)
|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|++..+ .+...|..+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 55 4578888888999999999999999998864 45678888999999999999999999999875 3566788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCch-H-------HHHHHHH
Q 040576 425 MGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV-E-------HYGCMVD 496 (641)
Q Consensus 425 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~li~ 496 (641)
..+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|++.|+.... +.|+. . .++....
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHH
Confidence 99999999999999999998753 22467888899999999999999999999987 33321 1 1222223
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHH
Q 040576 497 LLGRAGLMRDSEELVSKL-PMEAGP-ALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVE 574 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 574 (641)
.+...|++++|.+++++. ...|+. ..+..+...+...|++++|...|+++.++.+.....+ ....+.+|.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~ 588 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEAT 588 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHH
Confidence 344579999999999986 444554 4688899999999999999999999999877643322 222355556
Q ss_pred HHHHHh
Q 040576 575 NLRRIM 580 (641)
Q Consensus 575 ~~~~~m 580 (641)
++..+.
T Consensus 589 ~~~~~~ 594 (615)
T TIGR00990 589 RTQIQV 594 (615)
T ss_pred HHHHHH
Confidence 555444
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1e-18 Score=179.00 Aligned_cols=278 Identities=13% Similarity=0.114 Sum_probs=112.4
Q ss_pred CCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-C------eeHHHHHHHHHHhCCChHHH
Q 040576 170 IRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVW-D------LVTWNSMIDGYVKNREVGFA 242 (641)
Q Consensus 170 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~g~~~~A 242 (641)
.|++++|...+..+.+.+ +.+..++..+...+...|++++|..+++.+... + ...+..++..|.+.|++++|
T Consensus 48 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred cCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344444444444444432 122334444444444444444444444432211 0 01233334444444444444
Q ss_pred HHHHhhCCC---CCchhHHHHHHHHhcCCChHHHHHHHhhcCCCC--------chHHHHHHHHHHhcCChHHHHHHHHhc
Q 040576 243 RELFDFMPE---RDIFTWNSMISGYVDVGDMEAANGLFDLMPFRD--------VVSWNCMIDGYAKIGNVTSARNCFDRM 311 (641)
Q Consensus 243 ~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~A~~~~~~~ 311 (641)
..+|+++.. .+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|.+.|+++
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 444444411 222333333444444444444444433332211 011233344444445555555544444
Q ss_pred CC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhH
Q 040576 312 CM---RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLL 388 (641)
Q Consensus 312 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 388 (641)
.+ .+...+..+...|.+.|++++|.++|+++.+.+......++..+..+|...|++++|...++.+.+.. |+...
T Consensus 207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~ 284 (389)
T PRK11788 207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADL 284 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchH
Confidence 21 12234444445555555555555555555443211112234444444444444444444444444432 22233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCC
Q 040576 389 STSLLTMYAKCGVMDLARNVFDNMTE--KNVVSWNSMIMGYGM---HGQGEKALEMFMEMEKRGPTP 450 (641)
Q Consensus 389 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p 450 (641)
+..++..+.+.|++++|..+|+++.+ |+...++.++..+.. .|+.++++.++++|.+.++.|
T Consensus 285 ~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 285 LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 34444444444444444444443332 333344443333332 224444444444444433333
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.9e-17 Score=177.97 Aligned_cols=323 Identities=8% Similarity=-0.029 Sum_probs=245.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhC---CCCCchhHHHHHHHHhcCCChHHHHHHHhhcCC--CC-chHHHHHHHHHHhcC
Q 040576 226 WNSMIDGYVKNREVGFARELFDFM---PERDIFTWNSMISGYVDVGDMEAANGLFDLMPF--RD-VVSWNCMIDGYAKIG 299 (641)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~ 299 (641)
...++..+.+.|++++|+.+++.. .+.+...+..++.++...|+++.|...++++.+ |+ ...+..+...+.+.|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 344566777788888888887777 333344555666667778888888888888764 33 567777888888888
Q ss_pred ChHHHHHHHHhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 040576 300 NVTSARNCFDRMCM---RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSY 376 (641)
Q Consensus 300 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 376 (641)
++++|...|++... .+...+..+...+...|++++|...++.+......+ ...+.. +..+...|++++|...++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHHH
Confidence 99999888888733 345678888888999999999999998887643222 222323 3347788999999999988
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCC
Q 040576 377 IQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEK----ALEMFMEMEKRGPT 449 (641)
Q Consensus 377 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~g~~ 449 (641)
+.+....++......+...+...|++++|...|++... .+...+..+...|...|++++ |...|++..+....
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 87764334444555567788899999999999988774 356678888999999999886 79999999885322
Q ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHH
Q 040576 450 PNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPAL-WGAL 526 (641)
Q Consensus 450 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l 526 (641)
+...+..+...+...|++++|...++++.. ..|+ ...+..+..+|.+.|++++|++.++++ ...|+... +..+
T Consensus 283 -~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 283 -NVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 456888888999999999999999999987 3454 566777889999999999999999987 34566544 3445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 527 LSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
..++...|+.++|...|+++++..|++.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 6678899999999999999999998864
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=7.8e-17 Score=177.00 Aligned_cols=406 Identities=10% Similarity=0.007 Sum_probs=279.9
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 040576 124 CNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYS 203 (641)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 203 (641)
-.-.+......|+.++|+++|. ..... -+.+...+..+...+...|++++|..+++..++.. +.+...+..+..++.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~-~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~ 94 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYN-RYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3445667778999999999998 55542 24445568888899999999999999999998864 445677888999999
Q ss_pred hcCCHHHHHHHHhcC---CCCCeeHHHHHHHHHHhCCChHHHHHHHhhC--CCCC-chhHHHHHHHHhcCCChHHHHHHH
Q 040576 204 VCGEVLDARKVFEDG---PVWDLVTWNSMIDGYVKNREVGFARELFDFM--PERD-IFTWNSMISGYVDVGDMEAANGLF 277 (641)
Q Consensus 204 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~~-~~~~~~ll~~~~~~g~~~~a~~~~ 277 (641)
..|++++|...+++. .+.+.. |..+...+...|+.++|+..++++ ..|+ ...+..+..++...|..+.|+..+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999874 344556 888999999999999999999999 3444 445566777888899999999999
Q ss_pred hhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCCh---HHHHHHHHHHHHC-CCCCCHH-
Q 040576 278 DLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDY---CECLRLFDRMIRG-DAKPNEA- 352 (641)
Q Consensus 278 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~-g~~p~~~- 352 (641)
+.+.. ++.....+ . .+.+.....- .+.......+++ ++|++.++.+.+. ...|+..
T Consensus 174 ~~~~~-~p~~~~~l-~-------~~~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 174 DDANL-TPAEKRDL-E-------ADAAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HhCCC-CHHHHHHH-H-------HHHHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 88775 22100000 0 0000000000 000001112223 5566666666643 1222221
Q ss_pred HHH----HHHHHHHccCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHH
Q 040576 353 SLM----SVLTACANMGVIDIGQWIHSYIQKCRIK-PDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKN-------VVSW 420 (641)
Q Consensus 353 ~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~ 420 (641)
.+. ..+.++...|++++|...|+.+.+.+.+ |+ .....+..+|...|++++|+..|+++.+.+ ...+
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 111 1133445557777777777777665422 22 122224567777777777777777765321 1235
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC
Q 040576 421 NSMIMGYGMHGQGEKALEMFMEMEKRGP-----------TPND---ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP 486 (641)
Q Consensus 421 ~~li~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 486 (641)
..+..++...|++++|..+++++..... .|+. ..+..+...+...|+.++|+++++++.. ..+.
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~ 391 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPG 391 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 5566677788888888888888776521 2332 2445667788899999999999999987 2344
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 040576 487 KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
+...+..++..+...|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 4778888999999999999999999987 44566 456677777889999999999999999999999983
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=4.5e-17 Score=175.02 Aligned_cols=324 Identities=9% Similarity=-0.045 Sum_probs=265.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHhhcCC--C-CchHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHH
Q 040576 255 FTWNSMISGYVDVGDMEAANGLFDLMPF--R-DVVSWNCMIDGYAKIGNVTSARNCFDRMCM---RNVVSWNILLALYVR 328 (641)
Q Consensus 255 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 328 (641)
.....++..+.+.|++++|..+++.... | +......++......|++++|...|+++.. .+...|..+...+..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3455677888999999999999998864 3 355667777778889999999999999833 455678888999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 040576 329 CKDYCECLRLFDRMIRGDAKPN-EASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARN 407 (641)
Q Consensus 329 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 407 (641)
.|++++|...++++.+. .|+ ...+..+...+...|++++|...+..+...... +...+..+ ..+...|++++|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 123 SKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 99999999999999884 454 557778888999999999999999988776432 33334333 34788999999999
Q ss_pred HHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHH----HHHHHHHhH
Q 040576 408 VFDNMTEK----NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLE----GWWYFDLMQ 479 (641)
Q Consensus 408 ~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~ 479 (641)
.++.+.+. +...+..+..++...|++++|+..++++.+.... +...+..+...+...|++++ |...|+++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99987652 2334455677889999999999999999986432 46677788899999999986 899999998
Q ss_pred HhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 040576 480 RIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGP 556 (641)
Q Consensus 480 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 556 (641)
+ ..|+ ...+..+...+.+.|++++|+..+++. ...|+ ...+..+..++...|++++|...++++.+..|+++..
T Consensus 278 ~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 278 Q---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred h---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 7 4454 678889999999999999999999987 33455 5567778888999999999999999999999998877
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 040576 557 YVLLSNIYASEGKWDEVENLRRIMKEKELE 586 (641)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 586 (641)
+..++.++...|++++|...+++..+..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 777889999999999999999999665543
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=6e-16 Score=159.12 Aligned_cols=508 Identities=10% Similarity=0.031 Sum_probs=353.2
Q ss_pred ChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHhhcCCChHHHHHhhhcCCCCCcccHHHHHHHH---Hc---CCCchhH
Q 040576 69 TVKEFHQIHTQLLVS--GLSQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQEPDAFMCNTIMKSF---LM---LNDPFGA 140 (641)
Q Consensus 69 ~~~~~~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~---~~---~g~~~~A 140 (641)
+...+..++..++.. ...||+.+. +..++.+.|+.+.|+..|...-+-|+..-++++... .. ...+..+
T Consensus 179 dY~~al~yyk~al~inp~~~aD~rIg---ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVRIG---IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCccch---hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 445556666664332 345666543 223667788888888888876544443333333211 11 2234455
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 040576 141 LSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFEL--DLFVRNSLIHMYSVCGEVLDARKVFEDG 218 (641)
Q Consensus 141 ~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 218 (641)
+.++...-... +.|+...+.|...+.-.|+++.+..+...+...-..- -...|--+.++|-..|+++.|.+.|.+.
T Consensus 256 ~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 256 VQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 55555222332 4466778888888888899999999998888764211 2234677889999999999999999763
Q ss_pred C--CCC--eeHHHHHHHHHHhCCChHHHHHHHhhC---CCCCchhHHHHHHHHhcCC----ChHHHHHHHhhcCCCC---
Q 040576 219 P--VWD--LVTWNSMIDGYVKNREVGFARELFDFM---PERDIFTWNSMISGYVDVG----DMEAANGLFDLMPFRD--- 284 (641)
Q Consensus 219 ~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~--- 284 (641)
. .+| +..+-.+...|.+.|+++.+...|+.+ .+.+..|...+...|+..+ ..+.|..++....++.
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 3 233 334556788899999999999999998 3344567777777777665 5677777777776543
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhc--------CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH--
Q 040576 285 VVSWNCMIDGYAKIGNVTSARNCFDRM--------CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRG---DAKPNE-- 351 (641)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-- 351 (641)
...|-.+..++-..+-+. ++.+|... ....+...|.+...+...|++++|...|++.... ...+|.
T Consensus 414 ~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 555655655555443332 24444333 2345567888999999999999999999988654 122332
Q ss_pred ----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHH
Q 040576 352 ----ASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMI 424 (641)
Q Consensus 352 ----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 424 (641)
.+--.+....-..++.+.|.+.|..+.+.. +.-+..|-.++.+....+...+|...+..... .++..|+.+.
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G 571 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLG 571 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHH
Confidence 222334445567779999999999998864 22233344444333344778889888888774 6778888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------hccHHHHHHHHHHhHHhhCCCCchHHH
Q 040576 425 MGYGMHGQGEKALEMFMEMEKR-GPTPNDATFICVLSACTH------------AGMVLEGWWYFDLMQRIYKIEPKVEHY 491 (641)
Q Consensus 425 ~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~ 491 (641)
..+.....+..|.+-|....+. ...+|..+...|.+.|.+ .+..+.|++.|.++.+ .-+-|...-
T Consensus 572 ~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAA 649 (1018)
T KOG2002|consen 572 NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAA 649 (1018)
T ss_pred HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhc
Confidence 8999999999998877776654 223566676677775543 2456788888888877 334456777
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhc
Q 040576 492 GCMVDLLGRAGLMRDSEELVSKLP--MEAGPALWGALLSACSTHSNSELGKIVAQHLMELE--PRDPGPYVLLSNIYASE 567 (641)
Q Consensus 492 ~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~ 567 (641)
+.+.-.++..|++.+|.++|.+.. ......+|..+.++|...|++..|+++|+..++.. .+++.....|+.++.+.
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 788889999999999999999873 22355689999999999999999999999998854 45778899999999999
Q ss_pred CChHHHHHHHHHhhhCCC
Q 040576 568 GKWDEVENLRRIMKEKEL 585 (641)
Q Consensus 568 g~~~~A~~~~~~m~~~~~ 585 (641)
|+|.+|.+.+.......+
T Consensus 730 ~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAP 747 (1018)
T ss_pred hhHHHHHHHHHHHHHhCC
Confidence 999999999988855443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=2.7e-15 Score=161.63 Aligned_cols=189 Identities=12% Similarity=0.017 Sum_probs=147.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHH
Q 040576 392 LLTMYAKCGVMDLARNVFDNMTEKN----VVSWNSMIMGYGMHGQGEKALEMFMEMEKRGP-----TPNDATFICVLSAC 462 (641)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----~p~~~~~~~ll~~~ 462 (641)
.+-++...|++.++++.|+.+..+. ..+-..+..+|...+++++|+.+|+++..... .++......|.-++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 3446677888888888888888422 23456678888888899999999888866421 22333356788888
Q ss_pred HhhccHHHHHHHHHHhHHhhC----------CCCc---hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 040576 463 THAGMVLEGWWYFDLMQRIYK----------IEPK---VEHYGCMVDLLGRAGLMRDSEELVSKL--PMEAGPALWGALL 527 (641)
Q Consensus 463 ~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~ 527 (641)
...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.++++ ..+.|...+..+.
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 889999999999988876211 0122 234455778889999999999999988 2335677888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
..+...|.+.+|+..++.+..++|++..+...++.++...|+|.+|..+.+..
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4e-15 Score=153.12 Aligned_cols=518 Identities=10% Similarity=0.052 Sum_probs=348.8
Q ss_pred hHHHHHhhhcCC---CCCcccHHHHHHHH--HcCCCchhHHHHHHHHHHh-cCCCCCcchHHHHHHHHhcCCCchhHHHH
Q 040576 106 VSLSVLFFDGIQ---EPDAFMCNTIMKSF--LMLNDPFGALSFYYEKMMA-KFVEHNHYTFPLLGKVCAGIRSLREGKKV 179 (641)
Q Consensus 106 ~~~A~~~~~~~~---~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 179 (641)
++.|...|...- ++|+-. -+.+++ ...|++..|+.+|...+.. ...+||.. ..+..++.+.|+.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHH
Confidence 478888888763 233322 233333 3568999999999932222 23455553 2333556788999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhc---CCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCC-
Q 040576 180 HARIVKCGFELDLFVRNSLIHMYSVCG---EVLDARKVFED---GPVWDLVTWNSMIDGYVKNREVGFARELFDFMPER- 252 (641)
Q Consensus 180 ~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 252 (641)
|.+..+... -++.++..|...-.... .+..+...+.. ....|+++.+.|.+.|.-.|++..+..+...+...
T Consensus 222 ~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 222 FERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 999887642 23334433333322333 35556666654 34668899999999999999999999999888332
Q ss_pred -----CchhHHHHHHHHhcCCChHHHHHHHhhcCCCC----chHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHH
Q 040576 253 -----DIFTWNSMISGYVDVGDMEAANGLFDLMPFRD----VVSWNCMIDGYAKIGNVTSARNCFDRMCM---RNVVSWN 320 (641)
Q Consensus 253 -----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~ 320 (641)
-..+|-.+..++-..|++++|...|-+..+.+ +..+..|..+|.+.|+++.+...|+.+.. .+..+..
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 23568889999999999999999999887633 45567789999999999999999999833 3455666
Q ss_pred HHHHHHHHcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH----HHcCCCCchhHHHHH
Q 040576 321 ILLALYVRCK----DYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYI----QKCRIKPDVLLSTSL 392 (641)
Q Consensus 321 ~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l 392 (641)
.|...|+..+ ..+.|..++.+..+.- +-|...|..+...+.. ++......++..+ ...+..+.+...|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 7777777775 4566777777766532 3445566655555544 4444446666544 345656788899999
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC-------CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 040576 393 LTMYAKCGVMDLARNVFDNMTE-------KNV------VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDA-TFICV 458 (641)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l 458 (641)
...+...|++..|...|..... +|. .+-..+...+-..++++.|.+.|....+. .|+-+ .|..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence 9999999999999999987653 222 12334566667778899999999998885 45533 45555
Q ss_pred HHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh--
Q 040576 459 LSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL----PMEAGPALWGALLSACST-- 532 (641)
Q Consensus 459 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~-- 532 (641)
+-.....+...+|...++.+.. ....++..+..+.+.+.+...+.-|.+-|+.+ ...+|+.+..+|.+.|.+
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 5344455788889888888877 33444555666777888888887777744443 344677777777775542
Q ss_pred ----------cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEE-----Eee
Q 040576 533 ----------HSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLV-----HPG 597 (641)
Q Consensus 533 ----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-----~~~ 597 (641)
.+..++|++.|.++++.+|.|..+-+-++-+++..|++.+|..+|.+.++...+-.+.+-.+ ...
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH
Confidence 34578888888888889999988888889899999999999999999887654332222222 001
Q ss_pred eeecc------cc-cccCCCCchhhHHHHHHHHHHHHHhhhccccc
Q 040576 598 EFASE------SI-VENCPPHRKCIVYSMLGEIGAQMKMCRRDVAS 636 (641)
Q Consensus 598 ~~~~~------~~-~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 636 (641)
.|..+ -+ .....++.+ +..-|++...+.+...+.+..
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~--vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSE--VLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHH--HHHHHHHHHHHhhhHHHHHHH
Confidence 11100 00 112233444 777777777777776665544
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.3e-14 Score=134.26 Aligned_cols=418 Identities=14% Similarity=0.118 Sum_probs=258.5
Q ss_pred ccchHHHHHHhhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH-hhcCCChH-HHHHhhhc-----------------
Q 040576 55 DLSHPILQKLESCSTVKEFHQIHTQLLVSGLSQDSFAASRVLKKL-CTSLSSVS-LSVLFFDG----------------- 115 (641)
Q Consensus 55 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~-~~~~~~~~-~A~~~~~~----------------- 115 (641)
.+-+.++.. .+.+.++...-+++.|.+.|++-++.....|++-+ |..+.++. .-.+-|-.
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 344555544 46688899999999999999998888877777632 22222221 11222222
Q ss_pred ------CCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCC
Q 040576 116 ------IQEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFE 189 (641)
Q Consensus 116 ------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 189 (641)
..+.+..+|..||+++|+--..++|.++|+ .......+.+..+||.+|.+-.- ....+++.+|....+.
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~k-E~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYK-EHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHH-HHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence 223456689999999999999999999999 77777788899999999887653 3337899999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhc--------CCCCCeeHHHHHHHHHHhCCChHH-HHHHHhhC-----------
Q 040576 190 LDLFVRNSLIHMYSVCGEVLDARKVFED--------GPVWDLVTWNSMIDGYVKNREVGF-ARELFDFM----------- 249 (641)
Q Consensus 190 ~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m----------- 249 (641)
||..|+|+++.+.++.|+++.|.+.+-+ +.+|...+|..+|..+++.++..+ |..++.++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 9999999999999999998888766532 567888899999998888887744 33444333
Q ss_pred -CCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 040576 250 -PERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVR 328 (641)
Q Consensus 250 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 328 (641)
.+.|...|...+..|.+..+.+.|.++.......+ +++..-..++ ...-|..+....++
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~---------------N~~~ig~~~~-----~~fYyr~~~~licq 410 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD---------------NWKFIGPDQH-----RNFYYRKFFDLICQ 410 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC---------------chhhcChHHH-----HHHHHHHHHHHHHH
Confidence 12345567778888888888888877766544211 0000000000 01123445555666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 040576 329 CKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNV 408 (641)
Q Consensus 329 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 408 (641)
....+.-+..|+.|.-.-+-|+..+...++.+....|.++-..+++..++..|.........-+...+++..-
T Consensus 411 ~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------- 483 (625)
T KOG4422|consen 411 MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------- 483 (625)
T ss_pred HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC-------
Confidence 6666777777777766666677777777777777777777777777777766644433333333333333220
Q ss_pred HhhcCCCChh---HHHHHHHHHHHcCChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCC
Q 040576 409 FDNMTEKNVV---SWNSMIMGYGMHGQGEKA-LEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKI 484 (641)
Q Consensus 409 ~~~~~~~~~~---~~~~li~~~~~~~~~~~A-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 484 (641)
.|+.. -+.....-++ -++.++ ...-.+|.+... .....+.+.-.+.+.|..++|.++|..+.++..-
T Consensus 484 -----hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 484 -----HPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred -----CCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 11111 1111111111 011111 122334444333 3344555555666777777777777777543333
Q ss_pred CCchHHHH---HHHHHHhhcCCHHHHHHHHHhC
Q 040576 485 EPKVEHYG---CMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 485 ~p~~~~~~---~li~~~~~~g~~~~A~~~~~~~ 514 (641)
.|.....+ .+++.-.+.+....|+.+++-|
T Consensus 555 ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 555 IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33333333 4555556667777777777666
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=2.2e-14 Score=154.67 Aligned_cols=432 Identities=9% Similarity=-0.015 Sum_probs=298.4
Q ss_pred hhcCCChHHHHHhhhcCC--CCCcc-cHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCC-cchHHHH--HHHHhcCCCc
Q 040576 100 CTSLSSVSLSVLFFDGIQ--EPDAF-MCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHN-HYTFPLL--GKVCAGIRSL 173 (641)
Q Consensus 100 ~~~~~~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~-~~~~~~l--l~~~~~~~~~ 173 (641)
..+.|+++.|+..|++.. .|+.. ....++..+...|+.++|+..++ ... .|+ ...+..+ ...+...|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~e-ka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYE-RYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHH-Hhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 478899999999999874 34431 23388888888999999999988 443 332 2333333 4577788999
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHh--CCChHHHHHHHhhC--
Q 040576 174 REGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVK--NREVGFARELFDFM-- 249 (641)
Q Consensus 174 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m-- 249 (641)
+.|.++++.+.+.. +-+...+..++..|...++.++|++.+++..+.++.....+..++.. .++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999999875 33567778888899999999999999998776555443334444444 55665699999998
Q ss_pred CCC-CchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 040576 250 PER-DIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVR 328 (641)
Q Consensus 250 ~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 328 (641)
..| +...+..+..++.+.|-...|.++..+-.. ..+-...... ..+.|.+..+....++.. .
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~----------~ 260 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQL-----ERDAAAEQVRMAVLPTRS----------E 260 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHHH-----HHHHHHHHHhhccccccc----------c
Confidence 334 455667788888888888888887776442 1100000000 011111111111101000 0
Q ss_pred cCC---hHHHHHHHHHHHHC-CCCCCH-HH----HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 040576 329 CKD---YCECLRLFDRMIRG-DAKPNE-AS----LMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKC 399 (641)
Q Consensus 329 ~g~---~~~A~~~~~~m~~~-g~~p~~-~~----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 399 (641)
..+ .+.|+.-++.+... +-.|.. .. ..-.+.++...|+..++++.++.+...+.+....+-..+.++|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 112 23444445554431 222322 11 2234556778888888888888888887666667778888888888
Q ss_pred CCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC--HH-HHH
Q 040576 400 GVMDLARNVFDNMTEK---------NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGP-----------TPN--DA-TFI 456 (641)
Q Consensus 400 g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~--~~-~~~ 456 (641)
+++++|..+|..+... +......|.-+|...+++++|..+++++.+.-. .|| -. .+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 8888888888887532 223346788888999999999999999887321 233 22 334
Q ss_pred HHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 040576 457 CVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHS 534 (641)
Q Consensus 457 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 534 (641)
.++..+.-.|+..+|++.++++.. .-+-|......+.+.+...|.+.+|++.++.. ...|+ ..+....+.++...+
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence 456678889999999999999977 34456888889999999999999999999876 34555 446667888889999
Q ss_pred CHHHHHHHHHHHHhcCCCCCch
Q 040576 535 NSELGKIVAQHLMELEPRDPGP 556 (641)
Q Consensus 535 ~~~~a~~~~~~~~~~~p~~~~~ 556 (641)
++++|..+.+.+.+..|+++..
T Consensus 499 e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 499 EWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hHHHHHHHHHHHHhhCCCchhH
Confidence 9999999999999999999843
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=1.7e-12 Score=133.23 Aligned_cols=519 Identities=10% Similarity=0.018 Sum_probs=321.7
Q ss_pred hhcCCChHHHHHhhhcC---CCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhH
Q 040576 100 CTSLSSVSLSVLFFDGI---QEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREG 176 (641)
Q Consensus 100 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 176 (641)
+++ |+.+.|.+++.++ .+.+...|.+|...|-+.|+.+.++..+- ...+-.+-|...|..+..-....|.++.|
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~l--lAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWL--LAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHH--HHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 444 9999999999987 34567889999999999999999988854 33333444666788888888899999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCe----eHHH----HHHHHHHhCCChHHHHHHHhh
Q 040576 177 KKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDL----VTWN----SMIDGYVKNREVGFARELFDF 248 (641)
Q Consensus 177 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~----~li~~~~~~g~~~~A~~~~~~ 248 (641)
.-.+.++++.. +++...+-.-...|-+.|+...|...|.++.+.++ .-.. .++..+...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999875 45555666677888899999999988887543333 2122 234566677777888888877
Q ss_pred CCC-----CCchhHHHHHHHHhcCCChHHHHHHHhhcCC----CC---------------------------chH-HHHH
Q 040576 249 MPE-----RDIFTWNSMISGYVDVGDMEAANGLFDLMPF----RD---------------------------VVS-WNCM 291 (641)
Q Consensus 249 m~~-----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~---------------------------~~~-~~~l 291 (641)
... -+...++.++..+.+...++.|......... +| ..+ +..+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 722 3445778888888888888888776655432 11 122 1122
Q ss_pred HHHHHhcCChHHHHHHHHhc----CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 040576 292 IDGYAKIGNVTSARNCFDRM----CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVI 367 (641)
Q Consensus 292 i~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 367 (641)
--...+.+...+++..|-.- ...++..|.-+..+|...|++.+|+.+|..+.....--+...|..+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 22223334444444433322 22345678888899999999999999999998875555677888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh------------HHHHHHHHHHHcCChHH
Q 040576 368 DIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVV------------SWNSMIMGYGMHGQGEK 435 (641)
Q Consensus 368 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~ 435 (641)
+.|.+.|+.++... +.+...-..|...|.+.|+.++|.++++.+..||.. .--.....+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998864 445666677888899999999999999998765521 11223345566677665
Q ss_pred HHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhhccHHHHHHHHHHh-----HHhhCCCCc-
Q 040576 436 ALEMFMEMEKRG----------------------PTPNDATFICVLSACTHAGMVLEGWWYFDLM-----QRIYKIEPK- 487 (641)
Q Consensus 436 A~~~~~~m~~~g----------------------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~-----~~~~~~~p~- 487 (641)
=+..-..|...+ ..-.......++.+-.+.++..........- ....++.-+
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 444433333211 0111112222333333333322211111111 000122222
Q ss_pred -hHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC
Q 040576 488 -VEHYGCMVDLLGRAGLMRDSEELVSKLP-----MEAGP---ALWGALLSACSTHSNSELGKIVAQHLMEL-----EPRD 553 (641)
Q Consensus 488 -~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~ 553 (641)
-..+.-++..+++.+++++|+.++..+. ..+.. ..-...+.++...+++..|...++.++.. +|..
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 1334456667777777777777766551 11221 11233445566677777777777776655 4544
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEE-------------EeeeeecccccccCCCCchhhHHHHH
Q 040576 554 PGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLV-------------HPGEFASESIVENCPPHRKCIVYSML 620 (641)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~p~~~~~~~~~~l 620 (641)
...|+...+...+.|+-.--.+++......+...+|....+ ++.+..-. ...+|+++- +--.|
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra--~~~~pd~Pl--~nl~l 780 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRA--FRQNPDSPL--INLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHH--HHhCCCCcH--HHHHH
Confidence 44555444555555554444455555444444444544444 22222222 567888777 66666
Q ss_pred HHHHHHH
Q 040576 621 GEIGAQM 627 (641)
Q Consensus 621 ~~l~~~~ 627 (641)
|--.-++
T Consensus 781 glafih~ 787 (895)
T KOG2076|consen 781 GLAFIHL 787 (895)
T ss_pred HHHHHHH
Confidence 6544443
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=5e-12 Score=124.93 Aligned_cols=437 Identities=12% Similarity=0.063 Sum_probs=305.5
Q ss_pred CCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHH----HHhCCCCChhHHHHHHHHHHhcCCHHH
Q 040576 135 NDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARI----VKCGFELDLFVRNSLIHMYSVCGEVLD 210 (641)
Q Consensus 135 g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~ 210 (641)
.-++.|..+++ ..++. ++-+...|.+....=-.+|+.+...+++++- ...|+..+...|-.=...+-+.|..-.
T Consensus 420 etYenAkkvLN-kaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 420 ETYENAKKVLN-KAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHH-HHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 33344444444 33332 4444444444444334444444444444332 223444444444443444444444433
Q ss_pred HHHHHhcC----C--CCCeeHHHHHHHHHHhCCChHHHHHHHhhC---CCCCchhHHHHHHHHhcCCChHHHHHHHhhcC
Q 040576 211 ARKVFEDG----P--VWDLVTWNSMIDGYVKNREVGFARELFDFM---PERDIFTWNSMISGYVDVGDMEAANGLFDLMP 281 (641)
Q Consensus 211 A~~~~~~~----~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 281 (641)
+..+.... . +.-..+|+.-...|.+.+.++-|..+|... .+.+...|......--..|..+.-..+++++.
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33333221 1 111235666666666667777777776666 23344556655555566677777777777765
Q ss_pred C--C-CchHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040576 282 F--R-DVVSWNCMIDGYAKIGNVTSARNCFDRMCM---RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLM 355 (641)
Q Consensus 282 ~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 355 (641)
. | ....|-....-+...|++..|..++....+ .+...|-+-+..-..+..++.|..+|.+... ..|+...|.
T Consensus 578 ~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~m 655 (913)
T KOG0495|consen 578 EQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWM 655 (913)
T ss_pred HhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhH
Confidence 3 2 245566666777788999999988888733 3556788888888889999999999988876 457777777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCC
Q 040576 356 SVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE--K-NVVSWNSMIMGYGMHGQ 432 (641)
Q Consensus 356 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 432 (641)
.-+..---.++.++|.++++..++. ++.-...|-.+.+.+-..++++.|.+.|..-.+ | .+..|-.|...--+.|+
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 7666667788899999999888875 344466788888889999999999998887664 4 44578888888888889
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 040576 433 GEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVS 512 (641)
Q Consensus 433 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 512 (641)
.-+|..++++..-.+++ +...|...|..-.+.|+.+.|..++.++.+ ..+.+-..|..-|.+..+.++-..+.+.++
T Consensus 735 ~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 735 LVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred hhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 99999999998887644 677888889998999999999999888877 355556778888888888888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 513 KLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 513 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
+.. .|+.....+...+-....++.|...|.++...+|++..+|..+...+.+.|.-++-.+++.+-.
T Consensus 812 kce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 812 KCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred hcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 875 5566666677777788899999999999999999999999999999999998888888888773
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=4.1e-14 Score=133.45 Aligned_cols=418 Identities=11% Similarity=0.059 Sum_probs=222.0
Q ss_pred hHHHHH---HHHhcCCCchhHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCCHHHHHHHHhc----CCCCCe----eHH
Q 040576 159 TFPLLG---KVCAGIRSLREGKKVHARIVKCGFELDLFVR-NSLIHMYSVCGEVLDARKVFED----GPVWDL----VTW 226 (641)
Q Consensus 159 ~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~----~~~~~~----~~~ 226 (641)
||+.|. .-|.......+|...++.+.+...-|+.... ..+.+.+.+...+.+|++.+.- .+..+. ...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 555544 3444556678899999999888877776643 3455677888899999998864 332222 234
Q ss_pred HHHHHHHHhCCChHHHHHHHhhC--CCCCchhHHHHHHHHhcCCChHHHHHHHhhcCC----CC--------chHHHHHH
Q 040576 227 NSMIDGYVKNREVGFARELFDFM--PERDIFTWNSMISGYVDVGDMEAANGLFDLMPF----RD--------VVSWNCMI 292 (641)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--------~~~~~~li 292 (641)
+.+.-.+++.|+++.|+..|+.. ..||..+--.++-++...|+.++..+.|.+++. +| ...-..|+
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 55555688999999999999988 567777666666677778999999999998863 11 11112222
Q ss_pred HHHHhcCC--------hHHHHHHH---Hhc----CCCCcc---hHH----------H--------HHHHHHHcCChHHHH
Q 040576 293 DGYAKIGN--------VTSARNCF---DRM----CMRNVV---SWN----------I--------LLALYVRCKDYCECL 336 (641)
Q Consensus 293 ~~~~~~~~--------~~~A~~~~---~~~----~~~~~~---~~~----------~--------li~~~~~~g~~~~A~ 336 (641)
.--.+... -..|.+.. -++ ..|+-. -|. . -..-|.++|+++.|+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 22222111 11222221 111 222211 011 1 123478899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 040576 337 RLFDRMIRGDAKPNEASLMSVLTACAN--MGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE 414 (641)
Q Consensus 337 ~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 414 (641)
++++-..+..-+.-...-+.+-..+.- ..++..|.++-+...... .-+....+.-.+.-...|++++|.+.|.+...
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 999888765433322222222222211 224455555444443322 11222222122222334566666666666655
Q ss_pred CChhHHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHH
Q 040576 415 KNVVSWNSMI---MGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHY 491 (641)
Q Consensus 415 ~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 491 (641)
.|...-.+|. -.+-..|+.++|++.|-++..- +..+......+.+.|....+..+|++++..... -++-|+...
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAIL 595 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHH
Confidence 5444333322 2344556666666665554432 122344445555555555556666665555433 233335555
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 040576 492 GCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGK 569 (641)
Q Consensus 492 ~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 569 (641)
..|.+.|-+.|+-..|.+..-+- . ..-+..+..-|...|....-.++++..|+++.-+.|+....-..++.++.+.|+
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 55566666666555555543222 1 112333333344444555555555555555555555544333333444445555
Q ss_pred hHHHHHHHHHh
Q 040576 570 WDEVENLRRIM 580 (641)
Q Consensus 570 ~~~A~~~~~~m 580 (641)
+..|.++++..
T Consensus 676 yqka~d~yk~~ 686 (840)
T KOG2003|consen 676 YQKAFDLYKDI 686 (840)
T ss_pred HHHHHHHHHHH
Confidence 55555555555
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=2.4e-14 Score=134.92 Aligned_cols=435 Identities=13% Similarity=0.076 Sum_probs=299.8
Q ss_pred HHHHcCCCchhHHHHHHHHHHhcCCCCCcchHH-HHHHHHhcCCCchhHHHHHHHHHHhCCCCC----hhHHHHHHHHHH
Q 040576 129 KSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFP-LLGKVCAGIRSLREGKKVHARIVKCGFELD----LFVRNSLIHMYS 203 (641)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~ 203 (641)
+-|..+....+|+..|+ .+.+...-||.-... .+...+.+.+.+..|.+.+.-....-...+ ....+.+.-.+.
T Consensus 209 qqy~~ndm~~ealntye-iivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYE-IIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHhhhhHHHHHHhhhhh-hhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 44555666788888888 777776777765432 234556677788888888877665422222 234556666678
Q ss_pred hcCCHHHHHHHHhcCC--CCCeeHHHHHHHHHHhCCChHHHHHHHhhCCC----------------CCchhHHHHH----
Q 040576 204 VCGEVLDARKVFEDGP--VWDLVTWNSMIDGYVKNREVGFARELFDFMPE----------------RDIFTWNSMI---- 261 (641)
Q Consensus 204 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------~~~~~~~~ll---- 261 (641)
+.|.+++|+..|+... .|+..+--.|+-++.--|+.++..+.|.+|+. |+....+..+
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~ 367 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH 367 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence 8999999999998743 34555444455555667888888888888811 2222222222
Q ss_pred -HHHhcCC--ChHHHH----HHHhhcCCCC-------------chHHHH--------HHHHHHhcCChHHHHHHHHhcCC
Q 040576 262 -SGYVDVG--DMEAAN----GLFDLMPFRD-------------VVSWNC--------MIDGYAKIGNVTSARNCFDRMCM 313 (641)
Q Consensus 262 -~~~~~~g--~~~~a~----~~~~~~~~~~-------------~~~~~~--------li~~~~~~~~~~~A~~~~~~~~~ 313 (641)
.-.-+.+ +.++++ ++..-++.|+ ...+.. -..-|.+.|+++.|++++.-..+
T Consensus 368 lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~ 447 (840)
T KOG2003|consen 368 LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK 447 (840)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh
Confidence 1122221 222222 2222223343 011111 12347889999999999988866
Q ss_pred CCcchHHHH------HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchh
Q 040576 314 RNVVSWNIL------LALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVL 387 (641)
Q Consensus 314 ~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 387 (641)
.|..+-.+. +.-+.--+++..|...-+...... +-+......-.......|++++|.+.+.+.....-.....
T Consensus 448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 555433222 222222346777777776665432 2333333333334456789999999999998765443444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040576 388 LSTSLLTMYAKCGVMDLARNVFDNMT---EKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTH 464 (641)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 464 (641)
.|| +.-.+-..|++++|++.|-++. ..++.....+...|-...+..+|++++.+.... ++.|+....-|...|-+
T Consensus 527 lfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 527 LFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhc
Confidence 444 3445778899999999998775 367778888889999999999999998776553 34467788889999999
Q ss_pred hccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCCHHHHHHH
Q 040576 465 AGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPALWGALLSA-CSTHSNSELGKIV 542 (641)
Q Consensus 465 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~-~~~~g~~~~a~~~ 542 (641)
.|+-.+|.+.+-.--+ -++-+.++...|..-|....-+++|+.+|++. -++|+..-|..++.. +++.|++++|...
T Consensus 605 egdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred ccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999988765533 35567888888999999999999999999998 478999999988876 5788999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 040576 543 AQHLMELEPRDPGPYVLLSNIYASEGK 569 (641)
Q Consensus 543 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 569 (641)
|+...+..|.+...+..|..++...|.
T Consensus 683 yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 683 YKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999887773
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=3e-12 Score=120.30 Aligned_cols=416 Identities=13% Similarity=0.088 Sum_probs=248.7
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHh--cCCCchhH-HHHHHHHHHhCCCCChhHHHH
Q 040576 121 AFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCA--GIRSLREG-KKVHARIVKCGFELDLFVRNS 197 (641)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 197 (641)
+++=|.|+.. ..+|...++.-+|+ .|+..|+..+...-..+++.-+ ...++.-+ .+-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~-~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYE-RMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHH-HHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 3444555543 33567777777777 7777777766665555544332 22222222 12333344444 2222222
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhC----CCCCchhHHHHHHHHhcCCChHHH
Q 040576 198 LIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFM----PERDIFTWNSMISGYVDVGDMEAA 273 (641)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~g~~~~a 273 (641)
+.|++.+ ++-+..++...++..||.++|+.-..++|.+++++- .+-+..+||.+|.+-.-..+
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~---- 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG---- 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----
Confidence 2444433 555555666667777777777777777777777665 33455566666554322211
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhc----CCCCcchHHHHHHHHHHcCChHH----HHHHHHHHHHC
Q 040576 274 NGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRM----CMRNVVSWNILLALYVRCKDYCE----CLRLFDRMIRG 345 (641)
Q Consensus 274 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 345 (641)
.++..+| ..||..|+|+++++..+.|+++. |++++.+|.+-
T Consensus 258 -------------------------------K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei 306 (625)
T KOG4422|consen 258 -------------------------------KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI 306 (625)
T ss_pred -------------------------------HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 2333333 34666666666666666666554 45667777888
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH----cCCCC----chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 040576 346 DAKPNEASLMSVLTACANMGVIDI-GQWIHSYIQK----CRIKP----DVLLSTSLLTMYAKCGVMDLARNVFDNMTE-- 414 (641)
Q Consensus 346 g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~----~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 414 (641)
|+.|...+|..++..+++.++..+ +..+..++.. ..++| |...|...+..|.+..+.+-|.++-.-...
T Consensus 307 GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~ 386 (625)
T KOG4422|consen 307 GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD 386 (625)
T ss_pred CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 888888888888887777776644 2333333322 22222 455566666777777777777776655442
Q ss_pred ------C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCC
Q 040576 415 ------K---NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIE 485 (641)
Q Consensus 415 ------~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 485 (641)
+ ...-|..+....|+....+.-+.+|+.|.-.-+-|+..+...++++..-.|.++-.-++|..++. +|..
T Consensus 387 N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght 465 (625)
T KOG4422|consen 387 NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHT 465 (625)
T ss_pred chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhh
Confidence 1 12345666777777777888888888888777777888888888888888888888888887777 6655
Q ss_pred CchHHHHHHHHHHhhcC-C--------HHH-----HHHHHH-------hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040576 486 PKVEHYGCMVDLLGRAG-L--------MRD-----SEELVS-------KL-PMEAGPALWGALLSACSTHSNSELGKIVA 543 (641)
Q Consensus 486 p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~~-------~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (641)
-+......+...+++.. + +.. |..+++ ++ ..+-.+...+..+-.+.+.|..++|.+++
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHH
Confidence 44444444444444443 1 111 111111 11 13344556666777788999999999999
Q ss_pred HHHHhcC---CCCCc--hHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 040576 544 QHLMELE---PRDPG--PYVLLSNIYASEGKWDEVENLRRIMKEKELE 586 (641)
Q Consensus 544 ~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 586 (641)
..+.+.. |..+. +...+.+.-.+.+....|...++-|.+.+..
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 9886543 33331 2234555566778888999999998766543
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=1.5e-11 Score=121.70 Aligned_cols=454 Identities=13% Similarity=0.049 Sum_probs=361.8
Q ss_pred hhcCCChHHHHHhhhcCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHH---HHhcCCCCCcchHHHHHHHHhcCCCc
Q 040576 100 CTSLSSVSLSVLFFDGIQ---EPDAFMCNTIMKSFLMLNDPFGALSFYYEK---MMAKFVEHNHYTFPLLGKVCAGIRSL 173 (641)
Q Consensus 100 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---m~~~~~~~~~~~~~~ll~~~~~~~~~ 173 (641)
+++..-++.|..++.... +.+...|-+--..=-.+|+.+....+..+. +...|+..+...|..=...|-..|..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 455566788888887653 456667766555556688888777776543 45688999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCeeHHHHHHHHHHhCCChHHHHHHHhh
Q 040576 174 REGKKVHARIVKCGFELD--LFVRNSLIHMYSVCGEVLDARKVFEDG---PVWDLVTWNSMIDGYVKNREVGFARELFDF 248 (641)
Q Consensus 174 ~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 248 (641)
-.+..+....+..|++.. ..||..--..|.+.+.++-|..+|... .+.+...|...+..--..|..++-..+|++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999998887543 348888889999999999999999763 355677888888777788999999999999
Q ss_pred C---CCCCchhHHHHHHHHhcCCChHHHHHHHhhcCC--C-CchHHHHHHHHHHhcCChHHHHHHHHhc--CCCCcchHH
Q 040576 249 M---PERDIFTWNSMISGYVDVGDMEAANGLFDLMPF--R-DVVSWNCMIDGYAKIGNVTSARNCFDRM--CMRNVVSWN 320 (641)
Q Consensus 249 m---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~--~~~~~~~~~ 320 (641)
. .+.....|-......-..|++..|..++..+.+ | +..+|-+-+........++.|..+|.+. ..++...|.
T Consensus 576 av~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~m 655 (913)
T KOG0495|consen 576 AVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWM 655 (913)
T ss_pred HHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhH
Confidence 8 333445555556677778999999999998875 2 3677888889999999999999999988 557777888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 040576 321 ILLALYVRCKDYCECLRLFDRMIRGDAKPN-EASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKC 399 (641)
Q Consensus 321 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 399 (641)
.-+..---.++.++|++++++.++. -|+ ...|..+...+-+.++++.|...|..-.+. ++..+..|-.|...--+.
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHh
Confidence 7777777889999999999998873 455 346777777888888999988887665543 355678898999999999
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 040576 400 GVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFD 476 (641)
Q Consensus 400 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 476 (641)
|.+-.|..++++..- .|...|...|..-.+.|+.+.|..+..+..+. ++.+...|..-|....+.++-......++
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH
Confidence 999999999998773 46789999999999999999999999988876 34345567767776666666554444443
Q ss_pred HhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 477 LMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 477 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
+ ..-|.++...+...+-...++++|.+.|.+. ...|| ..+|.-+...+..+|.-+.-.+++.+....+|.+.
T Consensus 812 k------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 812 K------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred h------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 3 4456777888888999999999999999987 44555 45888888899999999999999999999999998
Q ss_pred chHHHHHHH
Q 040576 555 GPYVLLSNI 563 (641)
Q Consensus 555 ~~~~~l~~~ 563 (641)
..|.....-
T Consensus 886 ~~W~avSK~ 894 (913)
T KOG0495|consen 886 ELWQAVSKD 894 (913)
T ss_pred cHHHHHhhh
Confidence 888777654
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=4.1e-14 Score=140.59 Aligned_cols=158 Identities=11% Similarity=0.098 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHH-
Q 040576 416 NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP-NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGC- 493 (641)
Q Consensus 416 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~- 493 (641)
.+.+|.++..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+.... .+..+|++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAw 492 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAW 492 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHH
Confidence 3455555555555555555555555555542 33 334454444445555555555555555533 33333332
Q ss_pred --HHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 040576 494 --MVDLLGRAGLMRDSEELVSKL-PMEAGPA-LWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGK 569 (641)
Q Consensus 494 --li~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 569 (641)
|.-.|.+.++++.|+-.|+++ .+.|... ....++..+.+.|+.++|+.+++++.-++|.|+-.-+..+.++...++
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 344455555555555555554 3344433 233334445555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHh
Q 040576 570 WDEVENLRRIM 580 (641)
Q Consensus 570 ~~~A~~~~~~m 580 (641)
+++|++.++++
T Consensus 573 ~~eal~~LEeL 583 (638)
T KOG1126|consen 573 YVEALQELEEL 583 (638)
T ss_pred hHHHHHHHHHH
Confidence 55555555555
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=1.1e-15 Score=148.25 Aligned_cols=256 Identities=17% Similarity=0.173 Sum_probs=113.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 040576 321 ILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMS-VLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKC 399 (641)
Q Consensus 321 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 399 (641)
.+...+.+.|++++|++++++......+|+...|.. +...+...++.+.|...++.+...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 446777888999999999976555432455554444 444566788899999999998876532 56667777777 688
Q ss_pred CCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 040576 400 GVMDLARNVFDNMTE--KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRG-PTPNDATFICVLSACTHAGMVLEGWWYFD 476 (641)
Q Consensus 400 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 476 (641)
+++++|.++++...+ ++...+..++..+...++++++..+++++.... ..++...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998887653 566778888899999999999999999987643 34566778888889999999999999999
Q ss_pred HhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 477 LMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKLP--MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 477 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
++.+ ..|+ ......++..+...|+.+++.++++... ...++..|..+..++...|+.++|...++++.+..|+|
T Consensus 171 ~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9988 4564 7788889999999999999888877662 23455678899999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 554 PGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
+.....++.++...|+.++|.+++++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999998874
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=1.3e-12 Score=134.14 Aligned_cols=348 Identities=15% Similarity=0.149 Sum_probs=212.3
Q ss_pred hCCChHHHHHHHhhC---CCCCchhHHHHHHHHhcCCChHHHHHHHhhcC---CCCchHHHHHHHHHHhcCChHHHHHHH
Q 040576 235 KNREVGFARELFDFM---PERDIFTWNSMISGYVDVGDMEAANGLFDLMP---FRDVVSWNCMIDGYAKIGNVTSARNCF 308 (641)
Q Consensus 235 ~~g~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~ 308 (641)
-.|+.++|.+++.++ .+.+...|.+|...|-+.|+.+++...+-.+- ..|...|..+.+...+.|+++.|.-.|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 347777777777777 33445677777777777777777766554332 344566777777777777777777777
Q ss_pred HhcCCCCcchH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHc-
Q 040576 309 DRMCMRNVVSW---NILLALYVRCKDYCECLRLFDRMIRGDAKPNE----ASLMSVLTACANMGVIDIGQWIHSYIQKC- 380 (641)
Q Consensus 309 ~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 380 (641)
.+..+.++.-| ---+..|.+.|+...|++-|.++.+...+.|. .+...++..+...++-+.|.++++.....
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 77644333322 33445667777777777777777664221111 11222333444444445555555444431
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHH--CCCCCCHHH
Q 040576 381 RIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE----KNVVSWNSMIMGYGMHGQGEKALEMFMEMEK--RGPTPNDAT 454 (641)
Q Consensus 381 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~g~~p~~~~ 454 (641)
+-..+...++.++.+|.+...++.|......+.. +|..-|..- ..++ .-+.-... .++.++...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~-----~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRR-----EEPNALCEVGKELSYDLRV 380 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcc-----ccccccccCCCCCCccchh
Confidence 1122333444455555555555555444433321 111111000 0000 00000000 122233222
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC--chHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHH
Q 040576 455 FICVLSACTHAGMVLEGWWYFDLMQRIYKIEP--KVEHYGCMVDLLGRAGLMRDSEELVSKLP---MEAGPALWGALLSA 529 (641)
Q Consensus 455 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~ 529 (641)
..+.-++.+....+....+...... ..+.| +...|.-+.++|.+.|++.+|+.+|..+. ...+...|..+..+
T Consensus 381 -~rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 381 -IRLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred -HhHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 1233334444444444444444444 44434 46788899999999999999999999882 23446689999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEE
Q 040576 530 CSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLV 594 (641)
Q Consensus 530 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 594 (641)
|...|.+++|.+.|++++...|++..+-..|+.+|.+.|+.++|.+.+..|..-+....+++.|.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 99999999999999999999999999999999999999999999999999976665666777776
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.3e-12 Score=118.76 Aligned_cols=362 Identities=11% Similarity=0.098 Sum_probs=230.3
Q ss_pred HHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCC-chHHHHHHHHHHhcCChHHHHHHHHh
Q 040576 232 GYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRD-VVSWNCMIDGYAKIGNVTSARNCFDR 310 (641)
Q Consensus 232 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~ 310 (641)
.+.+.|..+.|...|...+..-+..|...+....-.-+.+.+..+.......+ ...---+..++-.....+++..-.+.
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~ 252 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKER 252 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666543333334443433333333444333332222211 11111223334444455555444444
Q ss_pred cCC---CC-cchHHHHHHHHHHcCChHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 040576 311 MCM---RN-VVSWNILLALYVRCKDYCECLRLFDRMIRGDA-K-PNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKP 384 (641)
Q Consensus 311 ~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 384 (641)
... ++ ...-+....+.-...|+++|+.+|+++.+... + -|..+|+.++-.-.....+. ++..-.-.--+.
T Consensus 253 l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs----~LA~~v~~idKy 328 (559)
T KOG1155|consen 253 LSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS----YLAQNVSNIDKY 328 (559)
T ss_pred HHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH----HHHHHHHHhccC
Confidence 321 12 22222333444566778888888888877521 1 14456666654322211111 111111000122
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040576 385 DVLLSTSLLTMYAKCGVMDLARNVFDNMTEK---NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSA 461 (641)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 461 (641)
-+.|...+.+-|.-.++.++|...|++..+- -...|+.|..-|...++...|++-+++..+-... |-..|..|.++
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQa 407 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQA 407 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHH
Confidence 3456666778888888999999999988863 3467999999999999999999999999886422 67788899999
Q ss_pred HHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 040576 462 CTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKLP--MEAGPALWGALLSACSTHSNSEL 538 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 538 (641)
|.-.+...-|+-+|+++.. ++|+ ...|.+|.++|.+.++.++|++.|...- .+-+...+..|...+.+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999977 5554 7889999999999999999999999872 23345778889999999999999
Q ss_pred HHHHHHHHHh-------cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCC
Q 040576 539 GKIVAQHLME-------LEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPH 611 (641)
Q Consensus 539 a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 611 (641)
|...|++.++ .+|.-..+...|+.-+.+.+++++|..+..+. ..-+++.
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~------------------------~~~~~e~ 540 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV------------------------LKGETEC 540 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH------------------------hcCCchH
Confidence 9999998876 33433445555777788999999999888776 3335677
Q ss_pred chhhHHHHHHHHHHHH
Q 040576 612 RKCIVYSMLGEIGAQM 627 (641)
Q Consensus 612 ~~~~~~~~l~~l~~~~ 627 (641)
++ ...+|..+...+
T Consensus 541 ee--ak~LlReir~~~ 554 (559)
T KOG1155|consen 541 EE--AKALLREIRKIQ 554 (559)
T ss_pred HH--HHHHHHHHHHhc
Confidence 77 666666655443
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.5e-11 Score=120.08 Aligned_cols=279 Identities=11% Similarity=0.035 Sum_probs=224.2
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 040576 317 VSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMY 396 (641)
Q Consensus 317 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 396 (641)
........-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+-..+.+. .|....+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHH
Confidence 33444555677889999999999998874 3445555555566778888877777776677765 356778899999889
Q ss_pred HhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHH
Q 040576 397 AKCGVMDLARNVFDNMTEK---NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWW 473 (641)
Q Consensus 397 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 473 (641)
...|+.++|++.|.+...- -...|-....+|.-.|..|+|+..+...-+. ++-....+..+.--|.+.++.+.|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 9999999999999987743 3468999999999999999999999887764 12222334445666888999999999
Q ss_pred HHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 040576 474 YFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKLP--------MEA-GPALWGALLSACSTHSNSELGKIVA 543 (641)
Q Consensus 474 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (641)
+|.++.. +.|+ +..++-+.-.....+.+.+|..+|+... ..+ -..+++.|+.+|++.+.+++|+..+
T Consensus 402 Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 402 FFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 9999866 6565 6677777777778899999999988651 112 2456888999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHH
Q 040576 544 QHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEI 623 (641)
Q Consensus 544 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l 623 (641)
++++.+.|.++.+|..++-+|...|+++.|++.+.+. .-+.|++.- +-++|+.-
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa------------------------L~l~p~n~~--~~~lL~~a 532 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA------------------------LALKPDNIF--ISELLKLA 532 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH------------------------HhcCCccHH--HHHHHHHH
Confidence 9999999999999999999999999999999999998 788899999 88999876
Q ss_pred HHHH
Q 040576 624 GAQM 627 (641)
Q Consensus 624 ~~~~ 627 (641)
....
T Consensus 533 ie~~ 536 (611)
T KOG1173|consen 533 IEDS 536 (611)
T ss_pred HHhh
Confidence 6553
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.4e-12 Score=132.42 Aligned_cols=273 Identities=9% Similarity=0.041 Sum_probs=155.4
Q ss_pred cCChHHHHHHHHhcCCC--Ccc-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHHHH
Q 040576 298 IGNVTSARNCFDRMCMR--NVV-SWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLM--SVLTACANMGVIDIGQW 372 (641)
Q Consensus 298 ~~~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~ 372 (641)
.|+++.|.+.+...... ++. .|.....+..+.|+++.|.+.+.++.+ ..|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777766665332 122 222223444667777777777777765 334443222 22445666677777777
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---h--------hHHHHHHHHHHHcCChHHHHHHHH
Q 040576 373 IHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKN---V--------VSWNSMIMGYGMHGQGEKALEMFM 441 (641)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~~~~~~A~~~~~ 441 (641)
.++.+.+.. +-+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777776654 4455666666777777777777776666665421 1 122233333333344455555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-
Q 040576 442 EMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG- 519 (641)
Q Consensus 442 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~- 519 (641)
.+.+. .+.++.....+..++...|+.++|.+.+++..+ ..|+.... ++.+....++.+++++.+++. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 55332 233555666666666677777777777766655 23333221 122233446666666666655 22333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 520 PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
+.....+...|...+++++|...|+++.+..|++. .+..++.++.+.|+.++|.+.+++.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33455666667777777777777777777666653 4556677777777777776666654
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.6e-11 Score=117.66 Aligned_cols=215 Identities=17% Similarity=0.097 Sum_probs=173.2
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 040576 361 CANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKAL 437 (641)
Q Consensus 361 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~ 437 (641)
+.-.|+.-.+..-|+..++....+ ...|--+..+|....+.++-.+.|+...+ .|..+|..-...+.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 445678888888888888875333 33366677889999999999999998875 56778888888888899999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 040576 438 EMFMEMEKRGPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P 515 (641)
Q Consensus 438 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 515 (641)
.-|++.+.. .|+ ...|..+--+..+.+.++++...|++.++ .++--++.|+.....+...+++++|.+.|+.. .
T Consensus 415 aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 415 ADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999875 444 44677777777789999999999999988 45555788999999999999999999999976 3
Q ss_pred CCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 516 MEAG---------PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 516 ~~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
..|. +.+-..++-. .=.+++..|+.+++++++++|....+|..|+..-...|+.++|+++|++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333 2222223222 234899999999999999999999999999999999999999999999863
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.7e-14 Score=139.88 Aligned_cols=251 Identities=12% Similarity=0.092 Sum_probs=119.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcC
Q 040576 356 SVLTACANMGVIDIGQWIHSYIQKCR-IKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEK---NVVSWNSMIMGYGMHG 431 (641)
Q Consensus 356 ~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~ 431 (641)
.+...+.+.|++++|.+++....... .+.+...+..+.......++++.|...++++... +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45777889999999999996655444 3456677777888888899999999999999863 34567777777 6899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHH
Q 040576 432 QGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELV 511 (641)
Q Consensus 432 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 511 (641)
++++|.+++.+..+. .+++..+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887665 356667778888899999999999999998763445667888999999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccC
Q 040576 512 SKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAV 589 (641)
Q Consensus 512 ~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 589 (641)
++. ...|+ ......++..+...|+.+++..+++...+..|+++..+..++.+|...|+.++|+.++++.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~--------- 240 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA--------- 240 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH---------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc---------
Confidence 987 44565 6678899999999999999999999999988999999999999999999999999999998
Q ss_pred ceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhcccc
Q 040576 590 GSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRRDVA 635 (641)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 635 (641)
.+.+|+|.. +...++.+..+.|+..++..
T Consensus 241 ---------------~~~~p~d~~--~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 241 ---------------LKLNPDDPL--WLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp ---------------HHHSTT-HH--HHHHHHHHHT----------
T ss_pred ---------------ccccccccc--cccccccccccccccccccc
Confidence 778899999 99999999999998887754
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=2.6e-12 Score=131.18 Aligned_cols=279 Identities=11% Similarity=0.014 Sum_probs=169.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 040576 327 VRCKDYCECLRLFDRMIRGDAKPNE-ASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLA 405 (641)
Q Consensus 327 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 405 (641)
...|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.+..++....+..-.+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3567777777777766553 3433 233344455666777777777777766543122222333346667777888888
Q ss_pred HHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHH---HHHhhccHHHHHHHHHHh
Q 040576 406 RNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFIC-VLS---ACTHAGMVLEGWWYFDLM 478 (641)
Q Consensus 406 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~---~~~~~g~~~~a~~~~~~~ 478 (641)
...++.+.+ .+...+..+...+.+.|++++|.+++.++.+.++. +...+.. -.. .....+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 877777764 24556777777788888888888888888777643 3232211 111 112223333333344444
Q ss_pred HHhh--CCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040576 479 QRIY--KIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPAL---WGALLSACSTHSNSELGKIVAQHLMELEPR 552 (641)
Q Consensus 479 ~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 552 (641)
.+.. ..+.+...+..++..+...|+.++|.+.+++. ...|+... ...........++.+.+...++++.+..|+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 4311 01125677777778888888888888888776 33444432 111112233456777788888888888888
Q ss_pred CC--chHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhh
Q 040576 553 DP--GPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMC 630 (641)
Q Consensus 553 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~ 630 (641)
++ .....+++++.+.|+|++|.+.+++... .+.+|+++. +..|+.+..++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a----------------------~~~~p~~~~---~~~La~ll~~~g~~ 386 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAA----------------------CKEQLDAND---LAMAADAFDQAGDK 386 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH----------------------hhcCCCHHH---HHHHHHHHHHcCCH
Confidence 88 7777888888888888888888884211 345565544 44777777777665
Q ss_pred hcc
Q 040576 631 RRD 633 (641)
Q Consensus 631 ~~~ 633 (641)
.++
T Consensus 387 ~~A 389 (409)
T TIGR00540 387 AEA 389 (409)
T ss_pred HHH
Confidence 443
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.6e-12 Score=120.64 Aligned_cols=211 Identities=17% Similarity=0.142 Sum_probs=173.6
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHH
Q 040576 395 MYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEG 471 (641)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 471 (641)
.+.-+|+.-.|..-|+...+ .+...|--+...|....+.++-...|.+..+.+.. |+.+|..-.....-.+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 34557888888888888775 23334888889999999999999999999886533 667888888888888999999
Q ss_pred HHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 472 WWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL--PMEAGPALWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 472 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
..=|++.+. +.|+ +..|-.+.-+..|.+++++++..|++. ..+..+..|+.....+...++++.|.+.|+++++
T Consensus 414 ~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999987 6665 566777777788999999999999987 3444577888899999999999999999999999
Q ss_pred cCCC------CCchHHHHHHHHH-hcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHH
Q 040576 549 LEPR------DPGPYVLLSNIYA-SEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLG 621 (641)
Q Consensus 549 ~~p~------~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~ 621 (641)
++|. ++..+..-+-+.. =.+++..|.+++++. .+++|.++. .|+.|+
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA------------------------~e~Dpkce~--A~~tla 544 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKA------------------------IELDPKCEQ--AYETLA 544 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHH------------------------HccCchHHH--HHHHHH
Confidence 9998 6666555444333 238899999999998 889999999 999999
Q ss_pred HHHHHHHhhhcccc
Q 040576 622 EIGAQMKMCRRDVA 635 (641)
Q Consensus 622 ~l~~~~~~~~~~~~ 635 (641)
.+.-++++..++++
T Consensus 545 q~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 545 QFELQRGKIDEAIE 558 (606)
T ss_pred HHHHHHhhHHHHHH
Confidence 99999988887764
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=1.1e-11 Score=125.82 Aligned_cols=278 Identities=10% Similarity=0.005 Sum_probs=217.8
Q ss_pred cCCChHHHHHHHhhcCCCC--chHHHHH-HHHHHhcCChHHHHHHHHhcCC--CCcchHH--HHHHHHHHcCChHHHHHH
Q 040576 266 DVGDMEAANGLFDLMPFRD--VVSWNCM-IDGYAKIGNVTSARNCFDRMCM--RNVVSWN--ILLALYVRCKDYCECLRL 338 (641)
Q Consensus 266 ~~g~~~~a~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~ 338 (641)
..|+++.|.+......+.. +..+..+ .....+.|+++.|.+.|.++.+ |+...+. .....+...|++++|.+.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3799999999988776532 3333333 4445889999999999999844 3332222 336788999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchh-------HHHHHHHHHHhcCCHHHHHHHHhh
Q 040576 339 FDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVL-------LSTSLLTMYAKCGVMDLARNVFDN 411 (641)
Q Consensus 339 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 411 (641)
++++.+.. +-+......+...|.+.|+++.+..++..+.+.+..++.. .|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99998854 3345678888899999999999999999999987553321 333344444455667888888888
Q ss_pred cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCch
Q 040576 412 MTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV 488 (641)
Q Consensus 412 ~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 488 (641)
+++ .++.....+..++...|+.++|..++++..+. .|+.... ++.+....++.+++.+..+...+ ..+-|.
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCH
Confidence 874 57788899999999999999999999999884 4454322 33344456999999999999987 233446
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040576 489 EHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
..+.++...+.+.|++++|.+.|++. ...|+...+..+...+.+.|+.++|..++++.+.+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 67889999999999999999999987 567999999999999999999999999999988754
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.7e-12 Score=129.21 Aligned_cols=273 Identities=14% Similarity=0.051 Sum_probs=208.4
Q ss_pred ChHHHHHHHHhcCC--CCc-chHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040576 300 NVTSARNCFDRMCM--RNV-VSWNILLALYVRCKDYCECLRLFDRMIRGD--AKPNEASLMSVLTACANMGVIDIGQWIH 374 (641)
Q Consensus 300 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 374 (641)
+..+|...|...+. .|. .....+.++|...+++++|.++|+...+.. ..-+...|.+.+..+-+ +-+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45677778877532 233 334567788999999999999999887732 11244566666643321 1222222
Q ss_pred -HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 040576 375 -SYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEK---NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP 450 (641)
Q Consensus 375 -~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 450 (641)
+.+.+. -+..+.+|.++.++|.-.++.+.|++.|++...- ...+|+.+..=+.....+|.|...|+..... .|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 222332 2556889999999999999999999999998863 4578888888888999999999999988753 44
Q ss_pred CH-HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHH
Q 040576 451 ND-ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PME-AGPALWGAL 526 (641)
Q Consensus 451 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l 526 (641)
.. -.|..+...|.+.++++.|.-.|+++.. +.|. ......+...+-+.|+.++|+++++++ ..+ .++..---.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 33 3666788889999999999999999977 7776 455667788899999999999999997 223 334444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 527 LSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
+..+...+++++|...++++.++-|++...|..++.+|-+.|+.+.|+.-+.-|.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 66677889999999999999999999999999999999999999999998888843
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=7.3e-10 Score=105.92 Aligned_cols=472 Identities=13% Similarity=0.073 Sum_probs=331.7
Q ss_pred cCCChHHHHHhhhcC---CCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcc-hHHHHHHHHhcCCCchhHH
Q 040576 102 SLSSVSLSVLFFDGI---QEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHY-TFPLLGKVCAGIRSLREGK 177 (641)
Q Consensus 102 ~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~ 177 (641)
.++++..|+.+|+.. ...+...|-..+..=.++.++..|..+++ ..... -|-+. .|-..+..=-..|++..|+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~d-RAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWD-RAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHH-HHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 467788999999976 45677788888888888889999999988 44332 23222 2333333344568999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc--CCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCC--CC
Q 040576 178 KVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFED--GPVWDLVTWNSMIDGYVKNREVGFARELFDFMPE--RD 253 (641)
Q Consensus 178 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~ 253 (641)
++|+.-.+ ..|+...|++.|+.-.+-..++.|..++++ +..|++.+|--...---+.|+...|..+|+..++ .|
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 99998876 479999999999999999999999999998 5678999998888888899999999999988722 22
Q ss_pred c----hhHHHHHHHHhcCCChHHHHHHHhhcCC--C-C--chHHHHHHHHHHhcCC---hHHHHHH-----HHhcCCCCc
Q 040576 254 I----FTWNSMISGYVDVGDMEAANGLFDLMPF--R-D--VVSWNCMIDGYAKIGN---VTSARNC-----FDRMCMRNV 316 (641)
Q Consensus 254 ~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~--~~~~~~li~~~~~~~~---~~~A~~~-----~~~~~~~~~ 316 (641)
. ..+.+...--.+...++.|.-+|.-.+. | + ...|..+...--+-|+ +++++-- ++.+...|+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 2 2333333333455667778877776653 1 2 3445555544444444 4444332 233344444
Q ss_pred ---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HccCCHHHHHHHHHHHHHcCCC
Q 040576 317 ---VSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNE-------ASLMSVLTAC---ANMGVIDIGQWIHSYIQKCRIK 383 (641)
Q Consensus 317 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~ 383 (641)
.+|--.++.-...|+.+...++|++.... ++|-. ..|..+=.+| ....+.+.+.++++..++. ++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 45666677777889999999999999874 56632 1222222222 3467899999999999883 45
Q ss_pred CchhHHHHHHHHHH----hcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040576 384 PDVLLSTSLLTMYA----KCGVMDLARNVFDNMTE--KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFIC 457 (641)
Q Consensus 384 ~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 457 (641)
....++..+=-+|+ ++.++..|.+++..... |-...|..-|..-.+.+++|.+..+|++..+-++. |..++..
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~k 476 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSK 476 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHH
Confidence 56666665544554 67899999999988773 77788888898889999999999999999997533 6677877
Q ss_pred HHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----
Q 040576 458 VLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPALWGALLSACS----- 531 (641)
Q Consensus 458 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~----- 531 (641)
....-...|+.+.|..+|+.+.....+......|.+.|+.=...|.++.|..+++++ ...+...+|.++..--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccc
Confidence 777777889999999999999873333344567778888888999999999999987 33345557776665432
Q ss_pred hcC-----------CHHHHHHHHHHHHhc----CCCCC--chHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 532 THS-----------NSELGKIVAQHLMEL----EPRDP--GPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 532 ~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
..+ ++..|..+|+++... +|... ..+...-+.=...|...+...+-..|.
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 333 577889999988653 23221 122223333345566666666666663
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.9e-11 Score=116.36 Aligned_cols=253 Identities=13% Similarity=0.069 Sum_probs=115.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCC
Q 040576 324 ALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIK--PDVLLSTSLLTMYAKCGV 401 (641)
Q Consensus 324 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~ 401 (641)
.++......++++.-.+.....|++-+...-+....+.....++++|+.+|+++.+...- .|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444455555555555555444444333333333444455555555555555554210 133444433322211111
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHh
Q 040576 402 MDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRI 481 (641)
Q Consensus 402 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 481 (641)
+.---...-.+-+--+.|...+..-|.-.++.++|...|++..+.+.. ....++.+..-|....+...|++-++.+.+
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd- 392 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD- 392 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence 111111111122223334444444455555555555555555543211 223344444445555555555555555544
Q ss_pred hCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 040576 482 YKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYV 558 (641)
Q Consensus 482 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 558 (641)
+.| |-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|..+|.+.++.++|+..|++++....-+...|.
T Consensus 393 --i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 393 --INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred --cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 222 3444555555555555555555555554 2222 2335555555555555555555555555555444444555
Q ss_pred HHHHHHHhcCChHHHHHHHHHh
Q 040576 559 LLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~m 580 (641)
.|+++|-+.++.++|.+.+++-
T Consensus 471 ~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 5555555555555555555544
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=1.6e-10 Score=118.35 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCchHHHH
Q 040576 489 EHYGCMVDLLGRAGLMRDSEELVSKLP-----MEAGPALWGALLSACSTHSNSELGKIVAQHLMEL---EPRDPGPYVLL 560 (641)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l 560 (641)
..|..||+.+....+.++|..+.++.. ..-+..-+..+.....+.+....+..+++...+. .|.-......+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 456778888888888888888888873 2233444566777777888888888887776652 23334566677
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCcccCceEEE
Q 040576 561 SNIYASEGKWDEVENLRRIMKEKELEKAVGSSLV 594 (641)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 594 (641)
.+..+..|+.+...++.+-+...|+.- .|.-|.
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 777888899999999999888888877 366666
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=1.2e-10 Score=119.08 Aligned_cols=222 Identities=11% Similarity=0.004 Sum_probs=110.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHH-------HHHHH
Q 040576 323 LALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLST-------SLLTM 395 (641)
Q Consensus 323 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~ 395 (641)
...+...|+++.|...++.+.+.. +-+...+..+...+...|+++.+.+++..+.+.+..+...... .++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666665542 1233345555555566666666666666665554332221111 11111
Q ss_pred HHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHH-HHHHHhhccHH
Q 040576 396 YAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDAT--FICV-LSACTHAGMVL 469 (641)
Q Consensus 396 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~~~l-l~~~~~~g~~~ 469 (641)
-......+...+.++..++ .+...+..++..+...|++++|.+++++..+.. ||... +..+ .......++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence 1112223344444554443 356666667777777777777777777776652 33221 1111 11122235555
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040576 470 EGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSK--L-PMEAGPALWGALLSACSTHSNSELGKIVAQHL 546 (641)
Q Consensus 470 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 546 (641)
.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|..++++.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554111111113444555556666666666666662 2 33455555555555566666666666666554
Q ss_pred H
Q 040576 547 M 547 (641)
Q Consensus 547 ~ 547 (641)
+
T Consensus 397 l 397 (409)
T TIGR00540 397 L 397 (409)
T ss_pred H
Confidence 3
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.5e-09 Score=103.81 Aligned_cols=184 Identities=16% Similarity=0.181 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCeeHHHHHHHHHHhC
Q 040576 160 FPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGP---VWDLVTWNSMIDGYVKN 236 (641)
Q Consensus 160 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 236 (641)
|.....-=...+++..|+.+|+..+... ..+...|-..+.+-.++..+..|..++++.. +.-...|-..+..--..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 3333333344566667777777776544 3455566666666667777777777776522 22222344444444455
Q ss_pred CChHHHHHHHhhC--CCCCchhHHHHHHHHhcCCChHHHHHHHhhcC--CCCchHHHHHHHHHHhcCChHHHHHHHHhcC
Q 040576 237 REVGFARELFDFM--PERDIFTWNSMISGYVDVGDMEAANGLFDLMP--FRDVVSWNCMIDGYAKIGNVTSARNCFDRMC 312 (641)
Q Consensus 237 g~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 312 (641)
|++..|.++|++- -+|+...|.+.+.--.+-+.++.|..+|+... .|++..|-.....--++|.+..|..+|+...
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6666666666655 45666666666666666666666666666543 4555555555555555566666665555542
Q ss_pred C------CCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 313 M------RNVVSWNILLALYVRCKDYCECLRLFDRMIR 344 (641)
Q Consensus 313 ~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 344 (641)
+ .+...+++...-=.+++.++.|.-+|+-.++
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1112233333333344445555555555444
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.46 E-value=1.2e-08 Score=101.49 Aligned_cols=153 Identities=13% Similarity=0.078 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhcCCChHHHHHhhhcC----C-CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHH
Q 040576 91 AASRVLKKLCTSLSSVSLSVLFFDGI----Q-EPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGK 165 (641)
Q Consensus 91 ~~~~ll~~~~~~~~~~~~A~~~~~~~----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~ 165 (641)
++...+. +..++|++...+..|++. | ......|...+.-....|-++-++++|++.+ + .++..-.--|.
T Consensus 104 Iwl~Ylq-~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL-k----~~P~~~eeyie 177 (835)
T KOG2047|consen 104 IWLDYLQ-FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL-K----VAPEAREEYIE 177 (835)
T ss_pred HHHHHHH-HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH-h----cCHHHHHHHHH
Confidence 3333444 345566666666666643 1 1233456666666666666666666666222 2 12223444555
Q ss_pred HHhcCCCchhHHHHHHHHHHh------CCCCChhHHHHHHHHHHhcCCHHH---HHHHHhcCCCC--C--eeHHHHHHHH
Q 040576 166 VCAGIRSLREGKKVHARIVKC------GFELDLFVRNSLIHMYSVCGEVLD---ARKVFEDGPVW--D--LVTWNSMIDG 232 (641)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~li~~ 232 (641)
.++..+++++|.+.+...... ..+.+...|.-+.+..++..+.-. ...++..|... | ...|++|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 556666666666666554421 112333444444444443322111 12222332221 2 2357777788
Q ss_pred HHhCCChHHHHHHHhhC
Q 040576 233 YVKNREVGFARELFDFM 249 (641)
Q Consensus 233 ~~~~g~~~~A~~~~~~m 249 (641)
|++.|++++|..+|++.
T Consensus 258 YIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEA 274 (835)
T ss_pred HHHhhhhHHHHHHHHHH
Confidence 88888888888777765
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=8.9e-11 Score=106.88 Aligned_cols=260 Identities=13% Similarity=0.146 Sum_probs=154.4
Q ss_pred CCChHHHHHHHhhCCCCCchhH---HHHHHHHhcCCChHHHHHHHhhcCC-CC------chHHHHHHHHHHhcCChHHHH
Q 040576 236 NREVGFARELFDFMPERDIFTW---NSMISGYVDVGDMEAANGLFDLMPF-RD------VVSWNCMIDGYAKIGNVTSAR 305 (641)
Q Consensus 236 ~g~~~~A~~~~~~m~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~-~~------~~~~~~li~~~~~~~~~~~A~ 305 (641)
.++.++|.++|-+|.+.|..|| .++.+.|.+.|..+.|+.+++.+.+ || ..+...|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4677888888888865555544 3567788888888888888887764 54 344556677788888888888
Q ss_pred HHHHhcCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 040576 306 NCFDRMCMRNV---VSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRI 382 (641)
Q Consensus 306 ~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 382 (641)
.+|..+.+... ...-.|+..|....+|++|++.-++..+.|-++...-.
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---------------------------- 179 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---------------------------- 179 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH----------------------------
Confidence 88888755332 34566788888888888888888887775544332211
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040576 383 KPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEK---NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVL 459 (641)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 459 (641)
...|.-|...+....+.+.|..++.+..+. .+.+--.+...+...|+++.|++.|+...+.+..--..+...|.
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 112223333334444555555555554432 22233344555666667777777776666654333344555666
Q ss_pred HHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHH
Q 040576 460 SACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEEL-VSKLPMEAGPALWGALLSA 529 (641)
Q Consensus 460 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~ 529 (641)
.+|.+.|+.++....+..+.+ ..++...-..+.+......-.+.|... .+.+..+|+...+..++..
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 666666777766666666655 223333333333333333333444433 3334445666655555543
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=2.2e-10 Score=107.68 Aligned_cols=247 Identities=13% Similarity=0.104 Sum_probs=150.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 040576 329 CKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNV 408 (641)
Q Consensus 329 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 408 (641)
.|+|.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+..++.++-+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466677766666655554333 2234444555566667777777766666653345555555666666667777776666
Q ss_pred HhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhhccHHHHHHHHHHh
Q 040576 409 FDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPND-------ATFICVLSACTHAGMVLEGWWYFDLM 478 (641)
Q Consensus 409 ~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~ 478 (641)
.+.+.+ .+.........+|.+.|++.+...++.+|.+.|.--+. .+|..+++-+...+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 655443 45566666677777777777777777777776644332 24555555555555555555566665
Q ss_pred HHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 040576 479 QRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPY 557 (641)
Q Consensus 479 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 557 (641)
..+ .+-++..-.+++.-+.++|+.++|.+++++. +..-|+. -...-.+..-++.+.-+...++..+..|++|..+
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 542 2333444555666677777777777766654 3223333 2233345566666666777777777777777777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHh
Q 040576 558 VLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
..|+..|.+.+.|.+|.+.++..
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777777777777777765
No 54
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=3.7e-09 Score=104.18 Aligned_cols=437 Identities=13% Similarity=0.078 Sum_probs=252.4
Q ss_pred HHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHH--HHHHHH--
Q 040576 128 MKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNS--LIHMYS-- 203 (641)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~-- 203 (641)
+.-+...|++++|..... .+...+ +-|...+..=+-++...+.+++|..+.+ ..+. ..+++. +=.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~-Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTAN-KILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHH-HHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHH
Confidence 445556777888888777 555543 4455566666667777788888775433 2221 112222 234454
Q ss_pred hcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHH-hcCCChHHHHHHHhhcCC
Q 040576 204 VCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGY-VDVGDMEAANGLFDLMPF 282 (641)
Q Consensus 204 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~ 282 (641)
+.+..++|++.++...+.|..+...-...+.+.|++++|+.+|+.+.+.+...+..-+.+- ...+-.-.+. +.+....
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~ 169 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPE 169 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccC
Confidence 6788888888888544445445566667778888888888888888665555554443321 1111111121 2333322
Q ss_pred C---CchHHHHHHHHHHhcCChHHHHHHHHhc--------CCCCc----------chHHHHHHHHHHcCChHHHHHHHHH
Q 040576 283 R---DVVSWNCMIDGYAKIGNVTSARNCFDRM--------CMRNV----------VSWNILLALYVRCKDYCECLRLFDR 341 (641)
Q Consensus 283 ~---~~~~~~~li~~~~~~~~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~ 341 (641)
. +...+-.....+...|++.+|+++++.. ...|. ..-..|.-++...|+.++|..++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 1 2223333445566778888888888776 11111 1123455667788888888888888
Q ss_pred HHHCCCCCCHHHHHHH---HHHHHccCCHHH--HHHHHHHH-----------HHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 040576 342 MIRGDAKPNEASLMSV---LTACANMGVIDI--GQWIHSYI-----------QKCRIKPDVLLSTSLLTMYAKCGVMDLA 405 (641)
Q Consensus 342 m~~~g~~p~~~~~~~l---l~~~~~~g~~~~--a~~~~~~~-----------~~~~~~~~~~~~~~li~~~~~~g~~~~A 405 (641)
.++.. .+|....... +.+...-.++-. ....++.. ....-.-....-+.++.+| .+..+.+
T Consensus 250 ~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~ 326 (652)
T KOG2376|consen 250 IIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQV 326 (652)
T ss_pred HHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHH
Confidence 88764 3444222221 112222222111 11111111 0000001111222333333 3566777
Q ss_pred HHHHhhcCCCC-hhHHHHHHH-HHH-HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH------
Q 040576 406 RNVFDNMTEKN-VVSWNSMIM-GYG-MHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFD------ 476 (641)
Q Consensus 406 ~~~~~~~~~~~-~~~~~~li~-~~~-~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~------ 476 (641)
.++-...+... ...+..++. ++. +...+..|.+++...-+....-........+......|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 77777776422 233444443 332 233577888888877765322223455556667788999999999998
Q ss_pred --HhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 040576 477 --LMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL--------PMEAGP-ALWGALLSACSTHSNSELGKIVAQH 545 (641)
Q Consensus 477 --~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (641)
.+.+ .+..| .+...++..|.+.++.+-|..++.+. ...+.. .+|.-+...-.++|+.++|..++++
T Consensus 407 ~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 407 KSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 4444 33344 45566777888888766666665543 222222 2334444445677999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 546 LMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 546 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
+++.+|++......++.+|++.. .+.|..+-+.+
T Consensus 484 l~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 484 LVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 99999999999999999998764 66777665554
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=8.3e-11 Score=111.00 Aligned_cols=197 Identities=12% Similarity=0.087 Sum_probs=162.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040576 385 DVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSA 461 (641)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 461 (641)
....+..+...|...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 356677788888899999999999987763 3456788888999999999999999999988643 355677778888
Q ss_pred HHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 040576 462 CTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELG 539 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 539 (641)
+...|++++|.+.++.+............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999872222233556777888999999999999999887 2233 456788888889999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 540 KIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
...++++.+..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999888754
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=1.1e-07 Score=94.84 Aligned_cols=496 Identities=13% Similarity=0.141 Sum_probs=308.5
Q ss_pred HHHHHHHHH-HhCCCCChhHHHHHHHHHhhcCCChHHHHHhhhcCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 040576 73 FHQIHTQLL-VSGLSQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAK 151 (641)
Q Consensus 73 ~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~ 151 (641)
-+..++..+ +..+.....++...+. +....|-++-+.+++++.-.-++..-+-.|.-++..++.++|.+.+. .....
T Consensus 121 tR~tfdrALraLpvtqH~rIW~lyl~-Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la-~vln~ 198 (835)
T KOG2047|consen 121 TRRTFDRALRALPVTQHDRIWDLYLK-FVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA-TVLNQ 198 (835)
T ss_pred HHHHHHHHHHhCchHhhccchHHHHH-HHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH-HhcCc
Confidence 344444433 4456666677777887 56778888899999988654444456777888999999999998887 44322
Q ss_pred ------CCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCC--CCCh--hHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 040576 152 ------FVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGF--ELDL--FVRNSLIHMYSVCGEVLDARKVFEDGPVW 221 (641)
Q Consensus 152 ------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 221 (641)
..+-+...|..+-...++..+.-....+ +.+++.|+ -+|. ..|.+|.+-|.+.|+++.|..+|++....
T Consensus 199 d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 199 DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred hhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 2344556677777777666544333322 22223332 3443 47899999999999999999999884432
Q ss_pred --CeeHHHHHHHHHHhCC----------------C------hHHHHHHHhhCCC---------------CCchhHHHHHH
Q 040576 222 --DLVTWNSMIDGYVKNR----------------E------VGFARELFDFMPE---------------RDIFTWNSMIS 262 (641)
Q Consensus 222 --~~~~~~~li~~~~~~g----------------~------~~~A~~~~~~m~~---------------~~~~~~~~ll~ 262 (641)
.+.-|+.+.++|++-. + ++-.+.-|+.+.. .+..+|..-+.
T Consensus 278 v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~ 357 (835)
T KOG2047|consen 278 VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK 357 (835)
T ss_pred heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh
Confidence 3333455555544321 1 1112222332211 12223333222
Q ss_pred HHhcCCChHHHHHHHhhcCC-------CC--chHHHHHHHHHHhcCChHHHHHHHHhcCCCCc-------chHHHHHHHH
Q 040576 263 GYVDVGDMEAANGLFDLMPF-------RD--VVSWNCMIDGYAKIGNVTSARNCFDRMCMRNV-------VSWNILLALY 326 (641)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~li~~~ 326 (641)
...|+..+-...|.++.+ ++ ...|..+.+.|-..|+++.|..+|++..+-+- .+|......=
T Consensus 358 --l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 358 --LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME 435 (835)
T ss_pred --hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 234555555566665542 23 55788999999999999999999999855332 3455555666
Q ss_pred HHcCChHHHHHHHHHHHHCCCC-----------C------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHH
Q 040576 327 VRCKDYCECLRLFDRMIRGDAK-----------P------NEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLS 389 (641)
Q Consensus 327 ~~~g~~~~A~~~~~~m~~~g~~-----------p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 389 (641)
.+..+++.|+++++.....--. + +...|...+..--..|-++....+++.+++..+... .+.
T Consensus 436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP-qii 514 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP-QII 514 (835)
T ss_pred HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH-HHH
Confidence 6778899999988877542111 1 122344455555567888889999999998875432 222
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC----CCh-hHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040576 390 TSLLTMYAKCGVMDLARNVFDNMTE----KNV-VSWNSMIMGYGM---HGQGEKALEMFMEMEKRGPTPNDATFICVLSA 461 (641)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 461 (641)
......+-...-++++.++|++-.. |++ ..|+.-+.-+.+ ..+.+.|..+|++..+ |.+|...-+..|+-+
T Consensus 515 ~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA 593 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYA 593 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 2233345566678999999998764 554 357666555443 3568999999999999 677766543334333
Q ss_pred --HHhhccHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhc
Q 040576 462 --CTHAGMVLEGWWYFDLMQRIYKIEPK--VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPAL---WGALLSACSTH 533 (641)
Q Consensus 462 --~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~---~~~l~~~~~~~ 533 (641)
=.+.|....|+.+++++.. ++++. ...|+..|.--...=-+..-.++|+++ ..-|+... .......-.+.
T Consensus 594 ~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtkl 671 (835)
T KOG2047|consen 594 KLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKL 671 (835)
T ss_pred HHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhh
Confidence 2356889999999999876 55554 456777665433222222223333333 11234332 22233345678
Q ss_pred CCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCChHHHHHHH
Q 040576 534 SNSELGKIVAQHLMELEPR--DPGPYVLLSNIYASEGKWDEVENLR 577 (641)
Q Consensus 534 g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (641)
|.++.|..+|....++.++ +...|...-..=.+.|+-+...+++
T Consensus 672 GEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 672 GEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred hhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999998887654 4556777777777888854444433
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=4.5e-10 Score=102.41 Aligned_cols=290 Identities=12% Similarity=0.071 Sum_probs=204.3
Q ss_pred cCChHHHHHHHHhcCCCCcchHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHH
Q 040576 298 IGNVTSARNCFDRMCMRNVVSWN---ILLALYVRCKDYCECLRLFDRMIRGDAKPNE---ASLMSVLTACANMGVIDIGQ 371 (641)
Q Consensus 298 ~~~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~ 371 (641)
.++.++|.++|-+|.+.|..++. +|.+.|-+.|..+.|+++-+.+.++---+.. .....+..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 35677777777777665555443 5667777888888888887777663111111 22334555677888888888
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh--------HHHHHHHHHHHcCChHHHHHHHHHH
Q 040576 372 WIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVV--------SWNSMIMGYGMHGQGEKALEMFMEM 443 (641)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~A~~~~~~m 443 (641)
.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+-+.. .|.-+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888887754 233455667888888888999988888877653332 3444556666778899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH
Q 040576 444 EKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPAL 522 (641)
Q Consensus 444 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~ 522 (641)
.+.+.+ ....-..+.+.....|+++.|.+.++.+.+ .+..--..+...|..+|...|+.++....+.++ ...+....
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 886432 222333566778889999999999999988 443333677888999999999999999998876 44566666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH--hcCChHHHHHHHHHhhhCCCcccCc
Q 040576 523 WGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA--SEGKWDEVENLRRIMKEKELEKAVG 590 (641)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~ 590 (641)
...+...-....-.+.|...+.+-+...|.-...|..+-.-.. ..|.+.+-+.+++.|..+.++..|.
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 6666665556666788888888888888875544444433333 3466899999999999887776663
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=3.9e-09 Score=99.47 Aligned_cols=279 Identities=13% Similarity=0.072 Sum_probs=156.4
Q ss_pred CCChHHHHHHHhhC---CCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCC--C--chHHHHHHHHHHhcCChHHHHHHH
Q 040576 236 NREVGFARELFDFM---PERDIFTWNSMISGYVDVGDMEAANGLFDLMPFR--D--VVSWNCMIDGYAKIGNVTSARNCF 308 (641)
Q Consensus 236 ~g~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~A~~~~ 308 (641)
.|++.+|+++..+- -+.....|..-..+.-+.|+.+.+-..+.++.++ | ..++-+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 56677776666554 1222334444445555666666666666655543 2 333334444455555555554444
Q ss_pred Hhc---CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 040576 309 DRM---CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPD 385 (641)
Q Consensus 309 ~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 385 (641)
++. ...++........+|.+.|++.+...++.+|.+.|+--+...-. ..
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------le 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------LE 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------HH
Confidence 433 23344444555555555555555555555555554433321100 01
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040576 386 VLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSAC 462 (641)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 462 (641)
..+++.+++=....+..+.-...|+..+. .++..-.+++.-+.+.|+.++|.++..+..+++..|+. ...-.+
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhh
Confidence 22344444444444444444556666552 45566666677777777777777777777777666552 122234
Q ss_pred HhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040576 463 THAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPALWGALLSACSTHSNSELGKI 541 (641)
Q Consensus 463 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 541 (641)
.+.++...-++..++-.+..+..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+...|.-+..++.+.|+.++|..
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 556666666666666655333333 55666777777777777777777754 556777777777777777777777777
Q ss_pred HHHHHHh
Q 040576 542 VAQHLME 548 (641)
Q Consensus 542 ~~~~~~~ 548 (641)
+.+..+.
T Consensus 383 ~r~e~L~ 389 (400)
T COG3071 383 VRREALL 389 (400)
T ss_pred HHHHHHH
Confidence 7776654
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.2e-09 Score=105.30 Aligned_cols=277 Identities=9% Similarity=-0.046 Sum_probs=217.4
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040576 284 DVVSWNCMIDGYAKIGNVTSARNCFDRMCMR---NVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTA 360 (641)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 360 (641)
+..+.....+-+...+++.+..++++...+. +...+..-|.++...|+..+-..+-.++.+. .+-...+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3556666777788889999999999998543 4456667777889999999988888888874 34556789999988
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHH
Q 040576 361 CANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE--K-NVVSWNSMIMGYGMHGQGEKAL 437 (641)
Q Consensus 361 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~ 437 (641)
|...|+.++|.++|......+ +.-...|-.+.+.|+-.|..++|+..+....+ + .-..+--+..-|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 999999999999999887654 22345788889999999999999998877653 1 1112233455678899999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhh-CCCC----chHHHHHHHHHHhhcCCHHHHHHHH
Q 040576 438 EMFMEMEKRGPTP-NDATFICVLSACTHAGMVLEGWWYFDLMQRIY-KIEP----KVEHYGCMVDLLGRAGLMRDSEELV 511 (641)
Q Consensus 438 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~ 511 (641)
++|.+.... -| |+..++-+.-...+.+.+.+|..+|+...... .+.+ ...+++.|..+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 999988874 44 56677777777777899999999999887411 1111 2456788999999999999999999
Q ss_pred HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 040576 512 SKL--PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIY 564 (641)
Q Consensus 512 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 564 (641)
++. ..+.+..++.++.-.|...|+++.|...|.+++.+.|++..+-..|..+.
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 987 34567888999999999999999999999999999999976666666543
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=1.9e-10 Score=104.72 Aligned_cols=231 Identities=13% Similarity=0.072 Sum_probs=151.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 040576 320 NILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKC 399 (641)
Q Consensus 320 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 399 (641)
+.+.++|.+.|.+.+|.+-|+..... .|-..||..+-.+|.+..+...|..++.+-.+. ++.++.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45677778888888887777777663 455566766777777777777777777666654 234444444555555556
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 040576 400 GVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFD 476 (641)
Q Consensus 400 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 476 (641)
++.++|.++|+...+ .++.+.-++...|.-.++++-|+.+|+++.+.|+. ++..|+.+.-+|.-.+.++-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 666666666665553 23344444455555566666666666666666644 55555555555555555555555555
Q ss_pred HhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 040576 477 LMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGP 556 (641)
Q Consensus 477 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 556 (641)
+... .--.|+ .-..+|..+.......||+..|.+.|+-++.-+|++.+.
T Consensus 383 RAls-tat~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALS-TATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHh-hccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 4443 111111 123467777777788889999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 040576 557 YVLLSNIYASEGKWDEVENLRRIMKEKEL 585 (641)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 585 (641)
++.|+.+-.+.|+.++|..++.......+
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 99999999999999999999988765443
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=7.1e-08 Score=91.09 Aligned_cols=284 Identities=9% Similarity=-0.019 Sum_probs=201.6
Q ss_pred CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHH
Q 040576 312 CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASL-MSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLST 390 (641)
Q Consensus 312 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 390 (641)
.+.|+.....+...+...|+.++|...|++.+. +.|+..+- ....-.+...|+.+....+...+.... ..+...|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 345777788888888888999999888888765 34544321 111222456777777777776665532 12333333
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhc
Q 040576 391 SLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP-NDATFICVLSACTHAG 466 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 466 (641)
.-.......++++.|+.+-++... .+...|-.-...+...|+.++|.-.|+..+.. .| +...|..|+.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhc
Confidence 334445566788888888887765 44455555567788889999999999888764 43 5678999999999999
Q ss_pred cHHHHHHHHHHhHHhhCCCCchHHHHHHH-HHHhh-cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 040576 467 MVLEGWWYFDLMQRIYKIEPKVEHYGCMV-DLLGR-AGLMRDSEELVSKL-PMEAGP-ALWGALLSACSTHSNSELGKIV 542 (641)
Q Consensus 467 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~ 542 (641)
.+.+|.-.-+...+ -+.-+..+...+. ..+.- -..-++|.+++++. ...|+. ...+.+...|...|..+.++.+
T Consensus 383 ~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 99998877766655 2333444444332 22221 22347888888876 566774 4667777788899999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHH
Q 040576 543 AQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGE 622 (641)
Q Consensus 543 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~ 622 (641)
+++.+...|+.. .+..|++.+...+.+.+|++.+... ..++|+++. ...-|.+
T Consensus 461 Le~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~A------------------------Lr~dP~~~~--sl~Gl~~ 513 (564)
T KOG1174|consen 461 LEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKA------------------------LRQDPKSKR--TLRGLRL 513 (564)
T ss_pred HHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHH------------------------HhcCccchH--HHHHHHH
Confidence 999998888864 7888999999999999999999888 788888888 8888888
Q ss_pred HHHHHHh
Q 040576 623 IGAQMKM 629 (641)
Q Consensus 623 l~~~~~~ 629 (641)
+.+++.+
T Consensus 514 lEK~~~~ 520 (564)
T KOG1174|consen 514 LEKSDDE 520 (564)
T ss_pred HHhccCC
Confidence 8877764
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=7.8e-10 Score=104.32 Aligned_cols=188 Identities=9% Similarity=0.054 Sum_probs=154.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 040576 416 NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMV 495 (641)
Q Consensus 416 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 495 (641)
....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+ . .+.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALT-L-NPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCHHHHHHHH
Confidence 34577888999999999999999999998763 22456778888899999999999999999987 2 233456788889
Q ss_pred HHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChH
Q 040576 496 DLLGRAGLMRDSEELVSKLPM----EAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWD 571 (641)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 571 (641)
..+...|++++|.+.+++... ......+..+...+...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 999999999999999998731 2234567778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhc
Q 040576 572 EVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRR 632 (641)
Q Consensus 572 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~ 632 (641)
+|...+++.. ...|.+.. .+..+..+....++..+
T Consensus 187 ~A~~~~~~~~------------------------~~~~~~~~--~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 187 DARAYLERYQ------------------------QTYNQTAE--SLWLGIRIARALGDVAA 221 (234)
T ss_pred HHHHHHHHHH------------------------HhCCCCHH--HHHHHHHHHHHHhhHHH
Confidence 9999999984 33456666 66666666666555444
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=3.3e-08 Score=100.72 Aligned_cols=388 Identities=9% Similarity=0.006 Sum_probs=256.7
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCeeHHHHHHHHHHhCCChHHHHHHHhhC--CC--CC-chhH
Q 040576 186 CGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPV---WDLVTWNSMIDGYVKNREVGFARELFDFM--PE--RD-IFTW 257 (641)
Q Consensus 186 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~--~~-~~~~ 257 (641)
..+.-|..+|..|.-+..++|+++.+.+.|++..+ .....|+.+...|.-.|.-..|+.+++.- .. |+ ...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567889999999999999999999999998443 35567999999999999999999999887 22 33 3333
Q ss_pred HHHHHHHh-cCCChHHHHHHHhhcCC--------CCchHHHHHHHHHHhc-----------CChHHHHHHHHhcCCC---
Q 040576 258 NSMISGYV-DVGDMEAANGLFDLMPF--------RDVVSWNCMIDGYAKI-----------GNVTSARNCFDRMCMR--- 314 (641)
Q Consensus 258 ~~ll~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~~~~~--- 314 (641)
-..-..|. +.+.+++++..-.++.. .....|-.+.-+|... ....++.+.+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334443 45666666655554442 1244555555555433 1234667777777332
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCchhHHHHHH
Q 040576 315 NVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKC-RIKPDVLLSTSLL 393 (641)
Q Consensus 315 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li 393 (641)
|+..--.+.--|+-.++.+.|++..++..+-+-.-+...|..+.-.+...+++..|+.+.+..... |. |-.....-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhh
Confidence 332222234457778899999999999998766778888888888888999999999998776643 21 111111111
Q ss_pred HHHHhcCCHHHHHHHHhhcCC-------------------------------CC-hhHHHHHHHHHHHcC---ChHHHHH
Q 040576 394 TMYAKCGVMDLARNVFDNMTE-------------------------------KN-VVSWNSMIMGYGMHG---QGEKALE 438 (641)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~~~-------------------------------~~-~~~~~~li~~~~~~~---~~~~A~~ 438 (641)
+.-...++.++|......+.. .+ +.++..+..-....+ ..+..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence 222223444444443322210 01 112222221111111 11111
Q ss_pred HHHHHHHCCCC--CCHH------HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHH
Q 040576 439 MFMEMEKRGPT--PNDA------TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEEL 510 (641)
Q Consensus 439 ~~~~m~~~g~~--p~~~------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 510 (641)
|...-+. |+.. .+......+.+.+..++|...+.+..+ -.......|......+...|.+++|.+.
T Consensus 633 ----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 633 ----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred ----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 1211122 2211 233445567778888899888877766 2233466777778889999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 511 VSKL-PMEAG-PALWGALLSACSTHSNSELGKI--VAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 511 ~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
|... ...|+ .....++...+.+.|+...|.. ++..+.+++|.++..|+.++.++-+.|+.++|.+-|+...+-
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 8876 45666 4578899999999999888888 999999999999999999999999999999999999987654
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=1.7e-09 Score=114.88 Aligned_cols=245 Identities=14% Similarity=0.024 Sum_probs=177.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH---------ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 040576 331 DYCECLRLFDRMIRGDAKPNEA-SLMSVLTACA---------NMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCG 400 (641)
Q Consensus 331 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 400 (641)
++++|..+|++..+. .|+.. .|..+..++. ..+++++|...++.+.+.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 457888888888773 45543 4444443332 2345789999999988875 456778888888999999
Q ss_pred CHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Q 040576 401 VMDLARNVFDNMTE--K-NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDL 477 (641)
Q Consensus 401 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 477 (641)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999774 3 4567888999999999999999999999986433 222333445556678999999999999
Q ss_pred hHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 478 MQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPA-LWGALLSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 478 ~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
+.. . ..|+ ...+..+..+|...|++++|.+.++++ +..|+.. .++.+...+...| +.|...++.+.+..-..+
T Consensus 432 ~l~-~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRS-Q-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHH-h-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 876 2 2343 555777888999999999999999987 3445544 3455555667777 478888887776443333
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040576 555 GPYVLLSNIYASEGKWDEVENLRRIMKEKE 584 (641)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 584 (641)
.....+..+|.-.|+-+.+..+ +++.+.+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2334477788888888888777 8886654
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=3.6e-09 Score=108.79 Aligned_cols=227 Identities=10% Similarity=0.037 Sum_probs=107.4
Q ss_pred HHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHH
Q 040576 147 KMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTW 226 (641)
Q Consensus 147 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 226 (641)
.|...|+.||..||..+|.-||..|+.+.|- +|..|.-...+.+..+++.++.+..+.|+.+.+. .|...+|
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDty 86 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTY 86 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHH
Confidence 4555566666666666666666666665555 5555555555555555666665555555554443 4455556
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcC-CCC-chHHHHHHHHHHhcCChHHH
Q 040576 227 NSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMP-FRD-VVSWNCMIDGYAKIGNVTSA 304 (641)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~-~~~~~~li~~~~~~~~~~~A 304 (641)
+.|..+|.+.|++.- ++..++ ....+...+...|....-..++-.+. .|. ...-...+....-.|.++.+
T Consensus 87 t~Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 666666666655443 111111 11222333333443333333333321 111 11112233333444555555
Q ss_pred HHHHHhcCCCCc-chHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 040576 305 RNCFDRMCMRNV-VSWNILLALYVRCK-DYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRI 382 (641)
Q Consensus 305 ~~~~~~~~~~~~-~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 382 (641)
++++..++...- .+....++-+.... .+++-....+...+ .|+..+|..++.+-...|+.+.|..++..|.+.|+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 665555532110 01111122221111 22222222222221 36666677777766667777777777777777776
Q ss_pred CCchhHHHHH
Q 040576 383 KPDVLLSTSL 392 (641)
Q Consensus 383 ~~~~~~~~~l 392 (641)
+.+..-|-.|
T Consensus 236 pir~HyFwpL 245 (1088)
T KOG4318|consen 236 PIRAHYFWPL 245 (1088)
T ss_pred Ccccccchhh
Confidence 6655544333
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=1.1e-09 Score=110.81 Aligned_cols=191 Identities=18% Similarity=0.223 Sum_probs=134.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCC-CHH
Q 040576 391 SLLTMYAKCGVMDLARNVFDNMTE-------K----NVVSWNSMIMGYGMHGQGEKALEMFMEMEKR-----GPTP-NDA 453 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~p-~~~ 453 (641)
.+...|...+++++|..+|+++.. + -..+++.|..+|.+.|++++|...+++..+- |..+ ...
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 355566666777666666666542 1 1235666677777777777777766665431 2222 222
Q ss_pred -HHHHHHHHHHhhccHHHHHHHHHHhHHhhC--CCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhCC-------C--C
Q 040576 454 -TFICVLSACTHAGMVLEGWWYFDLMQRIYK--IEPK----VEHYGCMVDLLGRAGLMRDSEELVSKLP-------M--E 517 (641)
Q Consensus 454 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~--~ 517 (641)
.++.+...|...+.+++|..++....+... +.++ ..+++.|...|...|++++|.++++++- . .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 455667778888999999988887766332 2222 4578889999999999999999988761 1 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCC---chHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 518 AG-PALWGALLSACSTHSNSELGKIVAQHLME----LEPRDP---GPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 518 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
+. ...++.|...|.+.+++++|..+|..... .+|+++ .+|..|+.+|.+.|++++|.++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 34567788889999999999999887764 345554 578889999999999999999988875
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=1.5e-09 Score=105.42 Aligned_cols=188 Identities=18% Similarity=0.112 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 040576 387 LLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN-DATFICVLSAC 462 (641)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 462 (641)
..|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|...|++..+. .|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3455555566666666666666665543 24456666666677777777777777766654 333 34555566666
Q ss_pred HhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040576 463 THAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIV 542 (641)
Q Consensus 463 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 542 (641)
...|++++|.+.|+...+ ..|+..........+...+++++|.+.|++....-++..|. ........|+...+ ..
T Consensus 143 ~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TL 217 (296)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HH
Confidence 666777777777766665 33432211111222334556677777665431111111121 11122223333222 12
Q ss_pred HHHHH-------hcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 543 AQHLM-------ELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 543 ~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
++.+. ++.|+.+..|..++.+|.+.|++++|+..+++..
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22222 3445555677777777777777777777777773
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=3.7e-11 Score=81.42 Aligned_cols=50 Identities=24% Similarity=0.486 Sum_probs=45.5
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040576 314 RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACAN 363 (641)
Q Consensus 314 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 363 (641)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.6e-07 Score=86.98 Aligned_cols=404 Identities=11% Similarity=0.061 Sum_probs=193.9
Q ss_pred HHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 040576 129 KSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEV 208 (641)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 208 (641)
-++.+.|++++|+..|.-.|.+ -.++...+..+..+..-.|.+.+|+.+.... +.++..-..|.+.-.+.|+-
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcH
Confidence 3445567777777777632332 2344444444444444456666666654322 11222223333444455554
Q ss_pred HHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhC--CCCCchhHHHHHH-HHhcCCChHHHHHHHhhcCC--C
Q 040576 209 LDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFM--PERDIFTWNSMIS-GYVDVGDMEAANGLFDLMPF--R 283 (641)
Q Consensus 209 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~--~ 283 (641)
++-...-++... ...---++.+...-.-++.+|++++++. ..|+-...|.-+. +|.+...++-+.+++.-..+ |
T Consensus 138 k~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p 216 (557)
T KOG3785|consen 138 KRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP 216 (557)
T ss_pred HHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence 444443333221 1122233444444445667777777776 3344445554443 44566666666665554432 3
Q ss_pred C-chHHHHHHHHHHhc--CChHHHHHHHHhcCCCCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHH
Q 040576 284 D-VVSWNCMIDGYAKI--GNVTSARNCFDRMCMRNVVSWNILLALYVRC-----KDYCECLRLFDRMIRGDAKPNEASLM 355 (641)
Q Consensus 284 ~-~~~~~~li~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~ 355 (641)
| ....|.......+. |+..++ -...+...-...|- .+.-.++. .+-+.|++++-.+.+ +.|.. -.
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~--E~k~ladN~~~~~~-f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPEA--Rl 289 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAED--EKKELADNIDQEYP-FIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPEA--RL 289 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHH--HHHHHHhcccccch-hHHHHHHcCeEEEeCCccHHHhchHHHh--hChHh--hh
Confidence 3 22223222222221 222111 11111000000011 11111111 234555555554443 22222 22
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH-----HHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHH
Q 040576 356 SVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLT-----MYAKCGVMDLARNVFDNMTE-----KNVVSWNSMIM 425 (641)
Q Consensus 356 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~ 425 (641)
.++-.|.+.+++.+|..+.+.+.- ..|-......++. -......+.-|...|+-.-+ ..+.--.++..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 334445666666666655443321 0111111111111 11111224445555554432 22233455666
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHH-HHHHHHhhcCCH
Q 040576 426 GYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYG-CMVDLLGRAGLM 504 (641)
Q Consensus 426 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~ 504 (641)
++.-..++++.+-.+.....-=.. |..--..+..+.+..|++.+|.++|-.+.. ..+ .|..+|. .|.++|.+++++
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCc
Confidence 666667777777777766654222 333233466777777888888888776654 222 2334444 466778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCC
Q 040576 505 RDSEELVSKLPMEAGPALWGALL-SACSTHSNSELGKIVAQHLMELEPR 552 (641)
Q Consensus 505 ~~A~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~ 552 (641)
+-|.+++-++....+..+...++ +-|.+.+.+--|-..|+.+..++|.
T Consensus 445 ~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 445 QLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 88888887775434444444444 3477777777777888877777765
No 70
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.9e-08 Score=97.20 Aligned_cols=233 Identities=9% Similarity=0.017 Sum_probs=166.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----------HHHHH
Q 040576 354 LMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVV----------SWNSM 423 (641)
Q Consensus 354 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~l 423 (641)
...+..+..+..+++.+.+-+....... -++.-++....+|...|.+..+...-+...+.... ++..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4556677777778888888888887765 55666677778888888877777666654432211 22224
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchH-HHHHHHHHHhhcC
Q 040576 424 IMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVE-HYGCMVDLLGRAG 502 (641)
Q Consensus 424 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g 502 (641)
..+|.+.++++.|+..|.+.......|+.. .+....+++....+...- +.|... -.-.-...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhcc
Confidence 446667788888888888876654443322 223444444444444332 444421 1112256778999
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 503 LMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 503 ~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
++.+|+..|.++ ...|+ ...|....-+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|++|.+.+++.
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 33344 6688889999999999999999999999999999999999999999999999999999998
Q ss_pred hhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHH
Q 040576 581 KEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQ 626 (641)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~ 626 (641)
.+.+|.+.+ +.+.+.+-...
T Consensus 453 ------------------------le~dp~~~e--~~~~~~rc~~a 472 (539)
T KOG0548|consen 453 ------------------------LELDPSNAE--AIDGYRRCVEA 472 (539)
T ss_pred ------------------------HhcCchhHH--HHHHHHHHHHH
Confidence 667788888 66666665543
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=5.5e-11 Score=80.59 Aligned_cols=50 Identities=36% Similarity=0.641 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040576 415 KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTH 464 (641)
Q Consensus 415 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 464 (641)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998864
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=4.9e-09 Score=111.40 Aligned_cols=212 Identities=13% Similarity=0.014 Sum_probs=164.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC
Q 040576 365 GVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAK---------CGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQ 432 (641)
Q Consensus 365 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 432 (641)
+++++|...+++..+.. +.+...+..+..+|.. .+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34678899999988764 3345566666655542 2458899999998875 366788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHHhhcCCHHHHHHHH
Q 040576 433 GEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV-EHYGCMVDLLGRAGLMRDSEELV 511 (641)
Q Consensus 433 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 511 (641)
+++|...|++..+.+.. +...+..+...+...|++++|...++++.+ +.|+. ..+..++..+...|++++|++.+
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999986422 456778888899999999999999999988 45653 23334455577789999999999
Q ss_pred HhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 512 SKLP--MEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 512 ~~~~--~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
++.. ..|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8862 2354 4456677778889999999999999998888888888888888888888 4888888887553
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=1.6e-06 Score=88.73 Aligned_cols=401 Identities=13% Similarity=0.049 Sum_probs=261.1
Q ss_pred HHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--C--C-
Q 040576 147 KMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGP--V--W- 221 (641)
Q Consensus 147 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~- 221 (641)
.+....+.-|...|..+.-++...|+++.+-+.|++....- .-....|+.+--.|..+|.-..|..++++.. . |
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 34445566788889999888899999999999999987654 3366788889999999999999999998632 2 2
Q ss_pred CeeHHHHHHHHHHh-CCChHHHHHHHhhCC--------CCCchhHHHHHHHHhcC-----------CChHHHHHHHhhcC
Q 040576 222 DLVTWNSMIDGYVK-NREVGFARELFDFMP--------ERDIFTWNSMISGYVDV-----------GDMEAANGLFDLMP 281 (641)
Q Consensus 222 ~~~~~~~li~~~~~-~g~~~~A~~~~~~m~--------~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~ 281 (641)
|+..+-..-..|.+ .+.+++++..-.+.+ ......|..+.-+|... ..-.++++.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 33334333344443 466666666555541 22344555555444322 12345677777775
Q ss_pred C---CCchHHHHHHHHHHhcCChHHHHHHHHhc----CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHH
Q 040576 282 F---RDVVSWNCMIDGYAKIGNVTSARNCFDRM----CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRG-DAKPNEAS 353 (641)
Q Consensus 282 ~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~ 353 (641)
+ .|+.+.-.+.--|+..++++.|.+...+. ...+...|..+.-.+...+++.+|+.+.+..... |. |..-
T Consensus 472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l 549 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVL 549 (799)
T ss_pred hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhh
Confidence 4 33444455555677888999998888776 3456788999999999999999999999887653 21 1100
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH---------------------HcCC-------CCchhHHHHHHHHHHhcC---CH
Q 040576 354 LMSVLTACANMGVIDIGQWIHSYIQ---------------------KCRI-------KPDVLLSTSLLTMYAKCG---VM 402 (641)
Q Consensus 354 ~~~ll~~~~~~g~~~~a~~~~~~~~---------------------~~~~-------~~~~~~~~~li~~~~~~g---~~ 402 (641)
...-+..-...++.+++......+. +.|+ .....++..+.......+ ..
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 0000111111233333322211111 0111 111233333322222111 11
Q ss_pred HHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 040576 403 DLARNVFDNMTEKN------VVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFD 476 (641)
Q Consensus 403 ~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 476 (641)
+..+..+.....|+ ...|......+.+.++.++|...+.+..... .-....|......+...|.+++|.+.|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 11111122222233 2356677788889999999988888777642 2244566666777888999999999999
Q ss_pred HhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040576 477 LMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEE--LVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEP 551 (641)
Q Consensus 477 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 551 (641)
.... +.|+ +....++..++.+.|+..-|.. ++..+ ...| ++..|..+...+...|+.++|...|+-+.++++
T Consensus 709 ~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 709 VALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 9876 6776 6788899999999998877777 77776 4444 477999999999999999999999999999998
Q ss_pred CCC
Q 040576 552 RDP 554 (641)
Q Consensus 552 ~~~ 554 (641)
.+|
T Consensus 786 S~P 788 (799)
T KOG4162|consen 786 SNP 788 (799)
T ss_pred CCC
Confidence 776
No 74
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.17 E-value=2.2e-07 Score=93.84 Aligned_cols=184 Identities=13% Similarity=0.162 Sum_probs=80.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 040576 327 VRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLAR 406 (641)
Q Consensus 327 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 406 (641)
...+.|.+|+.+++.++..... .--|..+...|+..|+++.|+++|...- .++-.|.+|.+.|+|.+|.
T Consensus 743 i~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 3444455555555544442211 1123344444555555555555543221 2233445555555555555
Q ss_pred HHHhhcCCCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCC
Q 040576 407 NVFDNMTEKN--VVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKI 484 (641)
Q Consensus 407 ~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 484 (641)
++-++...|. ...|-+-..-+-.+|++.+|.++|-... .|+ ..|..|-+.|..+..+++.++-.
T Consensus 812 kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h----- 877 (1636)
T KOG3616|consen 812 KLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHH----- 877 (1636)
T ss_pred HHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhC-----
Confidence 5555444332 2233333334444555555555443322 222 12344445555554444433221
Q ss_pred CCc--hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040576 485 EPK--VEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIV 542 (641)
Q Consensus 485 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 542 (641)
|+ ..+-..+..-|...|++.+|.+-|-+.. -|.+-++.|...+-++.|.++
T Consensus 878 -~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 878 -GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred -hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHH
Confidence 11 1223334444555555555555554443 244444455555555444433
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=6.8e-09 Score=105.05 Aligned_cols=162 Identities=12% Similarity=0.114 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC----------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC-
Q 040576 387 LLSTSLLTMYAKCGVMDLARNVFDNMTE----------KNV-VSWNSMIMGYGMHGQGEKALEMFMEMEKR---GPTPN- 451 (641)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~- 451 (641)
.+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..++..+++++|..++++..+. -+.++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 4445555566666666666665554432 222 23566677788888899988888876542 12223
Q ss_pred ---HHHHHHHHHHHHhhccHHHHHHHHHHhHHhh----C-CCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC--------
Q 040576 452 ---DATFICVLSACTHAGMVLEGWWYFDLMQRIY----K-IEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-------- 514 (641)
Q Consensus 452 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------- 514 (641)
..+++.+...|.+.|++++|.++|+++.... + ..+. ...++.|...|.+.+++++|.++|.+.
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 3478899999999999999999999987643 1 1222 456788899999999999998888875
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 515 PMEAGP-ALWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 515 ~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
+..|+. .+|..|...|...|+++.|+++.+.+..
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344554 4788999999999999999999998874
No 76
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.16 E-value=9e-08 Score=88.22 Aligned_cols=312 Identities=12% Similarity=0.061 Sum_probs=163.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHH---HHHhcCCChHHHHHHHhhcCC--CCc-hHHHHHHHHHHhcC
Q 040576 226 WNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMI---SGYVDVGDMEAANGLFDLMPF--RDV-VSWNCMIDGYAKIG 299 (641)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~ 299 (641)
.-.+.+.+.-.|++..|+.-|...++-|+..|-++. ..|...|+...|+.-+..+.+ ||. ...-.-...+.+.|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 345667777777888888877777766666665544 345566666666665555543 331 11111223455566
Q ss_pred ChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 040576 300 NVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQK 379 (641)
Q Consensus 300 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 379 (641)
.++.|..-|+.+...++.- +....++.+. .+.+++. .....+..+...|+...++.....+++
T Consensus 121 ele~A~~DF~~vl~~~~s~-~~~~eaqskl-------~~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSN-GLVLEAQSKL-------ALIQEHW---------VLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCc-chhHHHHHHH-------HhHHHHH---------HHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 6666666665553322210 0000111110 1111111 122233344556667777777666666
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040576 380 CRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMT---EKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFI 456 (641)
Q Consensus 380 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 456 (641)
.. +.|...+..-..+|...|++..|+.-+.... ..+...+.-+-..+...|+.+.++...++-.+ +.||.....
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf 260 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCF 260 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHH
Confidence 43 4567777777777777777777766555443 34555555666666667777777766666655 355544211
Q ss_pred HHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHH
Q 040576 457 CVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGP-----ALWGALLSAC 530 (641)
Q Consensus 457 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~-----~~~~~l~~~~ 530 (641)
.. | ..+.+..+.++.|. ...+.++|.++++..++. ...|.. ..+..+-.++
T Consensus 261 ~~---Y---KklkKv~K~les~e-----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 261 PF---Y---KKLKKVVKSLESAE-----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HH---H---HHHHHHHHHHHHHH-----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 10 0 11111111111111 123344455555444432 223331 1223334445
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 531 STHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
...|++.+|++...+++.++|+|..++..-+.+|.-...|++|+.-++..
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56666677777777777777776666666677777666777777766666
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=8.7e-07 Score=88.84 Aligned_cols=114 Identities=12% Similarity=0.019 Sum_probs=49.6
Q ss_pred cCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 040576 133 MLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDAR 212 (641)
Q Consensus 133 ~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 212 (641)
..|+-++|.+.....++ +-.-+.+.|+.+.-......++++|.+.+..+.+.+ +.|...+.-|--.-+..|+++...
T Consensus 53 ~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred cccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 34555555555441111 112233344444444444455555555555555443 223344444433334444444443
Q ss_pred HHHhcC---CCCCeeHHHHHHHHHHhCCChHHHHHHHhhC
Q 040576 213 KVFEDG---PVWDLVTWNSMIDGYVKNREVGFARELFDFM 249 (641)
Q Consensus 213 ~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 249 (641)
..-... .+..-..|..+..++.-.|+...|..+++..
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333321 1223334555555555555555555555444
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=5.2e-09 Score=91.34 Aligned_cols=162 Identities=10% Similarity=0.073 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVD 496 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 496 (641)
+..-|.-+|.+.|++..|..-+++..+. .|+ ..++..+...|.+.|..+.|.+.|++..+ +.|+ -.+.|...-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 4556778899999999999999999986 444 45888888889999999999999999987 5565 677888899
Q ss_pred HHhhcCCHHHHHHHHHhCCCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHH
Q 040576 497 LLGRAGLMRDSEELVSKLPMEA---G-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDE 572 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 572 (641)
.+|..|++++|...|++....| . ..+|..+..+..+.|+.+.|...|++.++++|+++.....++....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999999873233 3 44788888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCC
Q 040576 573 VENLRRIMKEKEL 585 (641)
Q Consensus 573 A~~~~~~m~~~~~ 585 (641)
|...+++....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999876654
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=7.9e-07 Score=82.46 Aligned_cols=441 Identities=11% Similarity=0.038 Sum_probs=243.6
Q ss_pred HHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHH-HHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 040576 128 MKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPL-LGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCG 206 (641)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 206 (641)
+.-+....++..|+.+++ .-...+-. ....... +..++.+.|++++|...+..+.+.. .++...+..|..++.-.|
T Consensus 29 Ledfls~rDytGAislLe-fk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLE-FKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHH-Hhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 344455667777777776 22211111 1112333 3334457788888888888777643 566666666766666677
Q ss_pred CHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCC--
Q 040576 207 EVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRD-- 284 (641)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-- 284 (641)
.+.+|..+-.+.. .++..-..|...-.+.++-++-..+-+.+.... ..--++.......-.+++|+.++..+...+
T Consensus 106 ~Y~eA~~~~~ka~-k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 106 QYIEAKSIAEKAP-KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHHHHHhhCC-CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 8888877765432 223333344455556666655555444431111 111122222223345677777777766433
Q ss_pred chHHHH-HHHHHHhcCChHHHHHHHHhc---CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040576 285 VVSWNC-MIDGYAKIGNVTSARNCFDRM---CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTA 360 (641)
Q Consensus 285 ~~~~~~-li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 360 (641)
....|. +.-+|.+.+-++-+.++++-- ...++..-|.......+.=+-..|.+-.+++.+.+-.. |- .+.-
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~~~ 258 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-FIEY 258 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-hHHH
Confidence 222222 233455666565555554443 22233344444433333333333333334443322111 10 1111
Q ss_pred HHcc-----CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC---
Q 040576 361 CANM-----GVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQ--- 432 (641)
Q Consensus 361 ~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~--- 432 (641)
.++. .+-+.|.+++--+.+. -|. .--.|+--|.+.+++.+|..+...+....+.-|-.-.-.++..|+
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 1221 2334555554444332 222 223356678899999999999998876555444333333333333
Q ss_pred ----hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHH
Q 040576 433 ----GEKALEMFMEMEKRGPTPNDA-TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDS 507 (641)
Q Consensus 433 ----~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 507 (641)
..-|.+.|+-.-+.+..-|.. ---++..++.-..++++.+-++..+.. +-...|...+ .+..+++..|++.+|
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEA 412 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHH
Confidence 455666665554444333322 122344555556788999999999887 5444444444 478999999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcC-CCC-CchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 508 EELVSKLP--MEAGPALWGALL-SACSTHSNSELGKIVAQHLMELE-PRD-PGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 508 ~~~~~~~~--~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
+++|-.+. .-.+..+|.+++ .+|.+.+.++.|..++ ++.+ |.+ ...+..+++.|.+.+.+--|.+.|+.+..
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 99998873 113455665554 5678899998887665 3333 222 23456678889999999999999988866
Q ss_pred CCCcc
Q 040576 583 KELEK 587 (641)
Q Consensus 583 ~~~~~ 587 (641)
.++.|
T Consensus 490 lDP~p 494 (557)
T KOG3785|consen 490 LDPTP 494 (557)
T ss_pred cCCCc
Confidence 55544
No 80
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=4.4e-06 Score=87.69 Aligned_cols=144 Identities=13% Similarity=0.226 Sum_probs=117.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 040576 416 NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMV 495 (641)
Q Consensus 416 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 495 (641)
.+..|..+..+-.+.|...+|++-|-+.. |+..|..+++.+.+.|.|++-.+++..+++ ..-.|.++ +.|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHH
Confidence 44689999999999999999998876542 678899999999999999999999988877 55566654 5689
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHH
Q 040576 496 DLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVEN 575 (641)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 575 (641)
-+|++.+++.+-++++. .|+......+..-|...|.++.|.-+|.. ...|..|+..+...|++..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877764 47777788888889999999999888864 4457778888888888877776
Q ss_pred HHHHh
Q 040576 576 LRRIM 580 (641)
Q Consensus 576 ~~~~m 580 (641)
.-+++
T Consensus 1242 ~aRKA 1246 (1666)
T KOG0985|consen 1242 AARKA 1246 (1666)
T ss_pred Hhhhc
Confidence 55554
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4e-07 Score=86.15 Aligned_cols=189 Identities=8% Similarity=-0.031 Sum_probs=129.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 040576 363 NMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEM 439 (641)
Q Consensus 363 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~ 439 (641)
..++++.|..+-+..++.+ +-+...+-.-..++...|+.++|.-.|+.... -+..+|.-|+.+|...|++.+|..+
T Consensus 312 ~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred hhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 3344444444444444432 12233333334455666777777777766553 3567788888888888888888777
Q ss_pred HHHHHHCCCCCCHHHHHHHH-HHH-HhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 040576 440 FMEMEKRGPTPNDATFICVL-SAC-THAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-P 515 (641)
Q Consensus 440 ~~~m~~~g~~p~~~~~~~ll-~~~-~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 515 (641)
-+..... +.-+..+...+. ..| .....-++|.+++++..+ +.|+ ....+.+...+.+.|..++++.++++. .
T Consensus 391 An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 391 ANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 6655443 233444554442 222 233345778888888765 6677 556677888999999999999999986 5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 040576 516 MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGP 556 (641)
Q Consensus 516 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 556 (641)
..||....+.|...+...+.+++|...|..+++++|++..+
T Consensus 467 ~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 467 IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 67899999999999999999999999999999999998543
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=6.9e-08 Score=93.83 Aligned_cols=229 Identities=10% Similarity=-0.025 Sum_probs=156.1
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 040576 330 KDYCECLRLFDRMIRGD-AKPN--EASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLAR 406 (641)
Q Consensus 330 g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 406 (641)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|....+.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777777776532 2222 2346666677888888888888888888765 446788888999999999999999
Q ss_pred HHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhC
Q 040576 407 NVFDNMTE--K-NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYK 483 (641)
Q Consensus 407 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 483 (641)
..|++..+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...|+.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99998864 3 4567888888999999999999999999885 44433222222234456789999999977654 2
Q ss_pred CCCchHHHHHHHHHHhhcCCH--HHHHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC
Q 040576 484 IEPKVEHYGCMVDLLGRAGLM--RDSEELVSKL-PM----EA-GPALWGALLSACSTHSNSELGKIVAQHLMELEP-RDP 554 (641)
Q Consensus 484 ~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~~-~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~ 554 (641)
..|+...+ .+... ..|+. +++.+.+.+. .. .| ....|..+...+...|++++|+..|+++++.+| +..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 23333 34444 3334333322 11 11 235788899999999999999999999999997 555
Q ss_pred chHHHHHHHHHh
Q 040576 555 GPYVLLSNIYAS 566 (641)
Q Consensus 555 ~~~~~l~~~~~~ 566 (641)
++-..++.....
T Consensus 272 e~~~~~~e~~~~ 283 (296)
T PRK11189 272 EHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=2.1e-06 Score=88.34 Aligned_cols=411 Identities=12% Similarity=0.074 Sum_probs=223.7
Q ss_pred HHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--
Q 040576 129 KSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCG-- 206 (641)
Q Consensus 129 ~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-- 206 (641)
..+...|++++|++.+. . ....+......+......+.+.|+.++|..++..+++.+ +.+..-|..|..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~-~-~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLE-K-NEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHH-h-hhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 45567788888888887 3 222244444456666777788888888888888888876 234445555555553222
Q ss_pred ---CHHHHHHHHhcCCCCCee--HHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcC
Q 040576 207 ---EVLDARKVFEDGPVWDLV--TWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMP 281 (641)
Q Consensus 207 ---~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 281 (641)
+.+...+++++.....+. +...+.-.+.....+.. .+...+..+.
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~------------------------------~~~~yl~~~l 138 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKE------------------------------RLDEYLRPQL 138 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHH------------------------------HHHHHHHHHH
Confidence 334444444432211111 00001000111011111 1112222222
Q ss_pred CCC-chHHHHHHHHHHhcCChHHHHHHHHhc------------------CCCCcc--hHHHHHHHHHHcCChHHHHHHHH
Q 040576 282 FRD-VVSWNCMIDGYAKIGNVTSARNCFDRM------------------CMRNVV--SWNILLALYVRCKDYCECLRLFD 340 (641)
Q Consensus 282 ~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~------------------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 340 (641)
+.+ +.+++.|-..|....+.+-..+++... ..|... ++..+...|...|++++|++.++
T Consensus 139 ~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 139 RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 333 234444444444333333333333332 112222 34566778888999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-
Q 040576 341 RMIRGDAKPN-EASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVV- 418 (641)
Q Consensus 341 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 418 (641)
+.++. .|+ ...|..-...+-+.|++.+|...++...... .-|..+-+..+..+.++|++++|.+++.....++..
T Consensus 219 ~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 219 KAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 88885 455 4567777778888999999999998888876 457777777888888999999999988887764421
Q ss_pred ---------HH--HHHHHHHHHcCChHHHHHHHHHHHHC--CC---CCCHHHH----------HHHHHHHHhhc------
Q 040576 419 ---------SW--NSMIMGYGMHGQGEKALEMFMEMEKR--GP---TPNDATF----------ICVLSACTHAG------ 466 (641)
Q Consensus 419 ---------~~--~~li~~~~~~~~~~~A~~~~~~m~~~--g~---~p~~~~~----------~~ll~~~~~~g------ 466 (641)
.| .....+|.+.|++..|+.-|....+. .+ +-|-++| ..++...-+..
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~ 375 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYR 375 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHH
Confidence 23 33467788889888888776655442 11 2222233 22222211111
Q ss_pred -cHHHHHHHHHHhHHhhCCCC-----------chHHHHHHHHHH---hhcCCHHHHHHHHH-----------hC----C-
Q 040576 467 -MVLEGWWYFDLMQRIYKIEP-----------KVEHYGCMVDLL---GRAGLMRDSEELVS-----------KL----P- 515 (641)
Q Consensus 467 -~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g~~~~A~~~~~-----------~~----~- 515 (641)
-...|++++-.+-....... +..--..+..-. .+...-+++...-. +. +
T Consensus 376 raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (517)
T PF12569_consen 376 RAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPK 455 (517)
T ss_pred HHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCC
Confidence 11233444433332110000 000000011000 11111111211110 00 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 040576 516 -MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRI 579 (641)
Q Consensus 516 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 579 (641)
..+|+.. ..|+ ....-.++|..+++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 456 ~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 456 KKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 1222211 1122 2233578899999999999999999999999999999999999887764
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.3e-06 Score=86.75 Aligned_cols=430 Identities=13% Similarity=0.029 Sum_probs=253.6
Q ss_pred HhhcCCChHHHHHhhhcCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcC--CCCCcchHHHHHHHHhcCCCc
Q 040576 99 LCTSLSSVSLSVLFFDGIQ---EPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKF--VEHNHYTFPLLGKVCAGIRSL 173 (641)
Q Consensus 99 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~ 173 (641)
.+.+.|.+++|....+.+- +.+...+..-+-++.+.+.+++|+.+.+ ..+ ...+.+.|... -+.-+.+..
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ik----k~~~~~~~~~~~fEKA-Yc~Yrlnk~ 95 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIK----KNGALLVINSFFFEKA-YCEYRLNKL 95 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHH----hcchhhhcchhhHHHH-HHHHHcccH
Confidence 4688999999999988873 3456677777888899999999996655 222 11122222222 223378999
Q ss_pred hhHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHh-CCChHHHHHHHhhCCC
Q 040576 174 REGKKVHARIVKCGFELDL-FVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVK-NREVGFARELFDFMPE 251 (641)
Q Consensus 174 ~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~ 251 (641)
++|...++ |..++. .+...-...+.+.|++++|.++|+.+...+...+..-+.+-+- .+-.-.+ ++.+....
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~-~~~q~v~~ 169 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV-QLLQSVPE 169 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH-HHHHhccC
Confidence 99998877 444433 3666666778899999999999999877766666555443222 1111122 23444433
Q ss_pred CCchhHHHHHH---HHhcCCChHHHHHHHhhcC--------CCC----------chHHHHHHHHHHhcCChHHHHHHHHh
Q 040576 252 RDIFTWNSMIS---GYVDVGDMEAANGLFDLMP--------FRD----------VVSWNCMIDGYAKIGNVTSARNCFDR 310 (641)
Q Consensus 252 ~~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~--------~~~----------~~~~~~li~~~~~~~~~~~A~~~~~~ 310 (641)
....+|..+.+ .++..|++.+|+++++... ..| ..+..-|.-.+-..|+.++|..++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33445555543 4567899999999999882 111 22334455667788999999999998
Q ss_pred cCCC---Ccch----HHHHHHHHHHcCChH-HHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHccCCHHHHHH
Q 040576 311 MCMR---NVVS----WNILLALYVRCKDYC-ECLRLFDRMIRGDAKP----------NEASLMSVLTACANMGVIDIGQW 372 (641)
Q Consensus 311 ~~~~---~~~~----~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p----------~~~~~~~ll~~~~~~g~~~~a~~ 372 (641)
.... |... -|.|+..-....-++ .++..++........- .....+..+-. ...+..+.+.+
T Consensus 250 ~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~-l~tnk~~q~r~ 328 (652)
T KOG2376|consen 250 IIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA-LFTNKMDQVRE 328 (652)
T ss_pred HHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHH
Confidence 8443 3322 333333322222233 2333444332210000 00001111111 11122222222
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHH-----
Q 040576 373 IHSYIQKCRIKPDVLLSTSLLTMYAK--CGVMDLARNVFDNMTEK----NVVSWNSMIMGYGMHGQGEKALEMFM----- 441 (641)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~----- 441 (641)
+....- +..|. ..+..++....+ .....+|.+++....+. ....--+++......|+++.|++++.
T Consensus 329 ~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 329 LSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 221111 12222 333344433322 22466777777766642 23456667778889999999999999
Q ss_pred ---HHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCC-Cc----hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 040576 442 ---EMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIE-PK----VEHYGCMVDLLGRAGLMRDSEELVSK 513 (641)
Q Consensus 442 ---~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 513 (641)
...+.+..|. +...++..+.+.++-+.|..++......+... +. ..++.-++..-.+.|+-++|..++++
T Consensus 406 ~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 406 WKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 5555555554 44556667777777666777776665522111 11 23344445555688999999999999
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040576 514 LP--MEAGPALWGALLSACSTHSNSELGKIVAQHL 546 (641)
Q Consensus 514 ~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 546 (641)
+. ..++..+...++.+|... |++.|+.+-+++
T Consensus 484 l~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 484 LVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 82 456677888899888776 788887776654
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=6.8e-08 Score=84.51 Aligned_cols=195 Identities=13% Similarity=0.031 Sum_probs=126.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC
Q 040576 356 SVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQ 432 (641)
Q Consensus 356 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 432 (641)
.+...|...|+...|..-++..+++. +.+..++..+...|.+.|..+.|.+.|++..+ .+....|....-+|..|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 34445556666666666666666553 33455566666667777777777777766553 345566666777777777
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHH
Q 040576 433 GEKALEMFMEMEKRGPTP-NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEEL 510 (641)
Q Consensus 433 ~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 510 (641)
+++|...|++....---| -..||..+.-+..+.|+.+.|.++|++..+ ..|+ ......+.+.....|++-.|..+
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 777777777776642111 234677777777777777777777777766 3343 44556667777777777777777
Q ss_pred HHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 511 VSKL--PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 511 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
++.. ...++..+....+..-...||.+.+.+.-..+.+..|...
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 7765 2336666666666666777777777777777777777654
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.07 E-value=3.1e-06 Score=85.76 Aligned_cols=356 Identities=13% Similarity=0.104 Sum_probs=225.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHh--cCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCch--------hHH-------
Q 040576 196 NSLIHMYSVCGEVLDARKVFE--DGPVWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIF--------TWN------- 258 (641)
Q Consensus 196 ~~li~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~~------- 258 (641)
-+-|..|.+.|....|.+... +....|......+..++.+..-+++|-.+|+++..+|.. .|.
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH
Confidence 356777888888777766542 223344444555555555555555555555555332210 000
Q ss_pred ------------HHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcc--hHHHHHH
Q 040576 259 ------------SMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVV--SWNILLA 324 (641)
Q Consensus 259 ------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~ 324 (641)
.....+...|+++.|..-|-+. ...-.-+.+......|.+|+.+++.+...++. -|..+..
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea-----~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iad 773 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA-----NCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIAD 773 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHH
Confidence 1111122233333333222221 11122344556667888899999888665554 4778889
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 040576 325 LYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDL 404 (641)
Q Consensus 325 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 404 (641)
.|...|+++.|.++|.+.- .++-.+..|.+.|+++.|.++-.... |.......|-+-..-+-+.|++.+
T Consensus 774 hyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 774 HYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred HhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhh
Confidence 9999999999999997652 35566788999999999988765543 334456677766777788999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCC
Q 040576 405 ARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKI 484 (641)
Q Consensus 405 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 484 (641)
|.++|-.+..|+. -|..|-+.|..+..+++..+-.-. .-..|-..+..-+...|+...|...|-+...
T Consensus 843 aeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---- 910 (1636)
T KOG3616|consen 843 AEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---- 910 (1636)
T ss_pred hhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----
Confidence 9999999998875 477899999999998888764321 1234666777788889999999988876644
Q ss_pred CCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH-----HHHHH------HHHHHHhcCCHHHHHHHH------HHHH
Q 040576 485 EPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGP-----ALWGA------LLSACSTHSNSELGKIVA------QHLM 547 (641)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~------l~~~~~~~g~~~~a~~~~------~~~~ 547 (641)
|.+-+++|-..+.+++|.++-+.-+ ..+. ..|.. .+..+-++|-.+.|+... +-++
T Consensus 911 ------~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~af 983 (1636)
T KOG3616|consen 911 ------FKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAF 983 (1636)
T ss_pred ------HHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHH
Confidence 4556778888888888888766542 1121 12211 112233445444444321 1111
Q ss_pred h-----cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 040576 548 E-----LEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELE 586 (641)
Q Consensus 548 ~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 586 (641)
+ ....-+.....++.-+...|++++|.+-+-+..+.+.-
T Consensus 984 dlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 984 DLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred HHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 1 22334567788888889999999998877776655433
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.06 E-value=2.5e-06 Score=85.69 Aligned_cols=377 Identities=10% Similarity=0.010 Sum_probs=188.7
Q ss_pred HHhcCCHHHHHHHHhcCCC---CCeeHHHHHHHHHHhCCChHHHHHHHhhC--CCC-CchhHHHHHHHHhcCCChHHHHH
Q 040576 202 YSVCGEVLDARKVFEDGPV---WDLVTWNSMIDGYVKNREVGFARELFDFM--PER-DIFTWNSMISGYVDVGDMEAANG 275 (641)
Q Consensus 202 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~g~~~~a~~ 275 (641)
+...|+.++|......+.. .+.++|..+.-.+-...++++|++.|... ..| |...|.-+.-.-++.|+++....
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 3344555555555554332 23445555555555555566666665555 222 23333333333344455554444
Q ss_pred HHhhcCC--CC-chHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCcchHHHH------HHHHHHcCChHHHHHHHHH
Q 040576 276 LFDLMPF--RD-VVSWNCMIDGYAKIGNVTSARNCFDRMCM-----RNVVSWNIL------LALYVRCKDYCECLRLFDR 341 (641)
Q Consensus 276 ~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~ 341 (641)
......+ |+ ...|..+.-++.-.|+...|..+.+...+ ++...|... .......|.+++|++.+..
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 4333332 11 23344444444444555555544444311 222222111 1233445555555555444
Q ss_pred HHHCCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHH-HHHhhcCC--CC
Q 040576 342 MIRGDAKPNEASL-MSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLL-STSLLTMYAKCGVMDLAR-NVFDNMTE--KN 416 (641)
Q Consensus 342 m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~-~~~~~~~~--~~ 416 (641)
-... ..|...+ ..-...+.+.+++++|..++..++..+ ||..- |..+..++.+-.+.-++. .+|....+ |-
T Consensus 211 ~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 211 NEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred hhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 3221 1122211 122334555666666666666666553 33333 333333443333333333 44444332 10
Q ss_pred hhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHh---hC---------
Q 040576 417 VVSWNSMIMGYGMHGQ-GEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRI---YK--------- 483 (641)
Q Consensus 417 ~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~--------- 483 (641)
...-..+-.......+ .+..-.++..+.+.|+++- |..+...|-.....+-..++...+... .|
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 0000000001111122 2333445566667776543 333333332222111111111111110 00
Q ss_pred -CCCchHH--HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 040576 484 -IEPKVEH--YGCMVDLLGRAGLMRDSEELVSKL-PMEAGPA-LWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYV 558 (641)
Q Consensus 484 -~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 558 (641)
-+|.... +..++..+-+.|+++.|..+++.. ...|+.. .|..-...+.+.|+.++|...++.+.+++-.|...-.
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs 443 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS 443 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence 1455444 445788899999999999999987 4456643 5555567789999999999999999999977765555
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCC
Q 040576 559 LLSNIYASEGKWDEVENLRRIMKEKEL 585 (641)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 585 (641)
.-++-..++++.++|.++.......|.
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhccc
Confidence 677778899999999999998877764
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1.6e-08 Score=99.77 Aligned_cols=215 Identities=13% Similarity=0.062 Sum_probs=155.8
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 040576 362 ANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALE 438 (641)
Q Consensus 362 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~ 438 (641)
.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34455555555555555543 33556666666666666666666666666654 344555666667777777777887
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-----------HHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHH
Q 040576 439 MFMEMEKRGPTPNDATFICVL-----------SACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDS 507 (641)
Q Consensus 439 ~~~~m~~~g~~p~~~~~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 507 (641)
.++.-....++ |..+. ..+.....+....++|-.+....+..+|..++..|.-.|.-.|++++|
T Consensus 375 ~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77776553211 00010 122233345556666766666567668888999999999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 508 EELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 508 ~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
++.|+.+ .++|+ ...|+.|..++....+.++|+..|.+++++.|.-....+.|+-.|+..|.|+||.+.+=....
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999987 55666 558999999999999999999999999999999999999999999999999999998877643
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=1.2e-08 Score=97.45 Aligned_cols=145 Identities=16% Similarity=0.093 Sum_probs=88.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchH---HHHHHHHHHhhcCC
Q 040576 427 YGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVE---HYGCMVDLLGRAGL 503 (641)
Q Consensus 427 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~ 503 (641)
+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+++..+.-.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchh
Confidence 44456666666665432 2445555566666677777777777776654 333321 12223333333345
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh-HHHHHHHHHh
Q 040576 504 MRDSEELVSKLP--MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKW-DEVENLRRIM 580 (641)
Q Consensus 504 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m 580 (641)
+.+|.-+|+++. ..+++.+.+.+..++...|++++|+.+++.+++.+|+++.++..++.+....|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 777777777762 3356667777777777788888888888888877888877777777777777777 5566777776
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.3e-08 Score=92.92 Aligned_cols=221 Identities=12% Similarity=0.077 Sum_probs=165.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc--CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccC
Q 040576 289 NCMIDGYAKIGNVTSARNCFDRM--CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLM-SVLTACANMG 365 (641)
Q Consensus 289 ~~li~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g 365 (641)
+.+..+|.+.|.+.+|.+.|... ..+-+.+|-.|-++|.+..++..|+.++.+-.+ ..|-.+||. .+...+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHH
Confidence 45777888888888888888776 346677888888888888888888888888776 356666654 3555677788
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 040576 366 VIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFME 442 (641)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~ 442 (641)
+.+++.++++...+.. +.++....++...|.-.++.+-|+..|+++.. .++..|+.+.-+|.-.+++|-++.-|.+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8888888888888764 44566666677778888888888888888764 5777888888888888888988888888
Q ss_pred HHHCCCCCCH--HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 443 MEKRGPTPND--ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 443 m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
....--.|+. ..|..+.......|++..|.+.|+.... .-.-..+.++.|.-.-.+.|++++|..+++..
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 8765444443 3566666666777888888888887766 22233567777777777888888888777765
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.02 E-value=1.3e-06 Score=91.61 Aligned_cols=177 Identities=12% Similarity=0.024 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCChHHHHHhhhcC---CCCCcccHHHHHHHHHcCCCchhHHHHHHHHH
Q 040576 72 EFHQIHTQLLVSGLSQDSFAASRVLKKLCTSLSSVSLSVLFFDGI---QEPDAFMCNTIMKSFLMLNDPFGALSFYYEKM 148 (641)
Q Consensus 72 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m 148 (641)
....++..+....+.+.-......+...|+..-+...|.+.|+.. ...+...+-.....|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 334555555555666665555556665666666777888888765 34556677788888888888888887743111
Q ss_pred HhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHH-
Q 040576 149 MAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWN- 227 (641)
Q Consensus 149 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 227 (641)
.......-...|....-.+-..++...+..-|+...+.. +-|...|..|..+|.++|++..|.++|++...-++.++-
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 111111111223333334455667777777777766654 336678888889999999999999998775443333322
Q ss_pred --HHHHHHHhCCChHHHHHHHhhC
Q 040576 228 --SMIDGYVKNREVGFARELFDFM 249 (641)
Q Consensus 228 --~li~~~~~~g~~~~A~~~~~~m 249 (641)
-..-..+..|.+.+|+..+...
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1222345567777777776665
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=8.7e-06 Score=83.74 Aligned_cols=236 Identities=14% Similarity=0.082 Sum_probs=142.8
Q ss_pred CChhHHHHHHHH-HhhcCCChHHHHHhhhcCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhc-C--------CCCC
Q 040576 87 QDSFAASRVLKK-LCTSLSSVSLSVLFFDGIQEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAK-F--------VEHN 156 (641)
Q Consensus 87 ~~~~~~~~ll~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~-~--------~~~~ 156 (641)
-|+.+--.++.. +|..-|+.+.|.+-.+.++ +...|..|.+.|++..+.+-|.-.+- .|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClG-hm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLG-HMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhh-hhhhhhhHHHHHHHHhCCc
Confidence 566677777763 4667799988887776664 34578888888887776666655554 33321 1 1222
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CeeHHHHHHHHHHh
Q 040576 157 HYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVW-DLVTWNSMIDGYVK 235 (641)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~ 235 (641)
.+=..+.-.....|.+++|+.+|.+.++. ..|=..|-..|.|++|.++-+.-..- --.||.....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22222222335678899999999887654 23445667789999999887643221 12345555555666
Q ss_pred CCChHHHHHHHhhCC-----------------------CCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHH
Q 040576 236 NREVGFARELFDFMP-----------------------ERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMI 292 (641)
Q Consensus 236 ~g~~~~A~~~~~~m~-----------------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 292 (641)
.++.+.|++.|++.. ..|...|......+-..|+.+.|+.+|.... -|-+++
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~V 945 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMV 945 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhhe
Confidence 778888888887761 1355666666777777888998888887764 233444
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 040576 293 DGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRM 342 (641)
Q Consensus 293 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 342 (641)
...|-.|+.++|.++-++ ..|......|.+.|-..|++.+|...|.+.
T Consensus 946 rI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444445555555554443 223333444555555555555555555443
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=6.5e-07 Score=92.05 Aligned_cols=124 Identities=13% Similarity=0.107 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKLP-MEA-GPALWGALLSAC 530 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 530 (641)
++..+...|...|++++|+++.++.+. ..|+ ++.|..-.+.|-+.|++++|.+.++... ..+ |..+-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 334445556666777777777776666 3455 5666666666777777777777766652 222 233333444456
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCc-------hH--HHHHHHHHhcCChHHHHHHHHHh
Q 040576 531 STHSNSELGKIVAQHLMELEPRDPG-------PY--VLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~~~-------~~--~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
.+.|++++|+..+....+.+-+... .| ...+.+|.+.|++..|++-+..+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6677777777766666544321111 22 23466677777777777665554
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=9e-07 Score=80.21 Aligned_cols=414 Identities=11% Similarity=0.016 Sum_probs=231.5
Q ss_pred cCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCeeHHHH
Q 040576 151 KFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPV--WDLVTWNS 228 (641)
Q Consensus 151 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 228 (641)
.|+..-.--|..++..+.+..++..|.+++..-.+.. +.+....+.|..+|....++..|-..++.... |...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 3444445557777777777778888888877766654 22566677777888888888888888877542 22222322
Q ss_pred -HHHHHHhCCChHHHHHHHhhCCC-CCchhHHHHHHH--HhcCCChHHHHHHHhhcCC-CCchHHHHHHHHHHhcCChHH
Q 040576 229 -MIDGYVKNREVGFARELFDFMPE-RDIFTWNSMISG--YVDVGDMEAANGLFDLMPF-RDVVSWNCMIDGYAKIGNVTS 303 (641)
Q Consensus 229 -li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~ 303 (641)
-...+.+.+.+..|+.+...|.. ++...-..-+.+ ....+++..+..+.++... .+..+.+.......+.|+.+.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 23556677788888888877743 332222222222 2345677777777777763 445566666666667777777
Q ss_pred HHHHHHhcCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCHHHHHHHHH
Q 040576 304 ARNCFDRMCM----RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASL----MSVLTACANMGVIDIGQWIHS 375 (641)
Q Consensus 304 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~~~a~~~~~ 375 (641)
|.+-|....+ .....||..+ +..+.|+++.|++...++.+.|++-.+..- .-.+.+ ...|+. ..+
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~l-- 235 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVL-- 235 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHH--
Confidence 7777766532 2334555444 334556777777777777776664322100 000000 000000 000
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 040576 376 YIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE-----KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP 450 (641)
Q Consensus 376 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 450 (641)
..++ -+..+|.-...+.+.|+++.|.+.+..|+. .|+++...+.-.- ..+++.+..+-+.-+.+.++ -
T Consensus 236 --h~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-f 308 (459)
T KOG4340|consen 236 --HQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-F 308 (459)
T ss_pred --HHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-C
Confidence 0000 012233334456688999999999999984 4677776654332 23455555555555555543 3
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHh-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040576 451 NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLG-RAGLMRDSEELVSKLPMEAGPALWGALLSA 529 (641)
Q Consensus 451 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 529 (641)
...||..++-.|++..-++.|-.++.+-....-.-.+...|+ |++++. ..-..++|++-++.+...-....-..-+..
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~v 387 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQV 387 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999988888877754322000012233333 344444 344667776665554200001111111111
Q ss_pred -HHhcCC----HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 530 -CSTHSN----SELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 530 -~~~~g~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
-.++.+ ...++.-|+..+++- -.....-++.|.+..++..+.++|+.-.+-
T Consensus 388 Qe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 388 QEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 111111 222333344444432 225667788899999999999999887553
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.95 E-value=4.2e-08 Score=83.74 Aligned_cols=125 Identities=9% Similarity=-0.064 Sum_probs=101.4
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040576 473 WYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 473 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
.++++..+ +.|+. +..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555554 44553 555677888899999999998886 3334 56688888889999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHH
Q 040576 551 PRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMK 628 (641)
Q Consensus 551 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~ 628 (641)
|+++..+..++.++...|++++|+..+++. .+..|++.. .+...+.....++
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A------------------------l~~~p~~~~--~~~~~~~~~~~l~ 140 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTA------------------------IKMSYADAS--WSEIRQNAQIMVD 140 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------HHhCCCChH--HHHHHHHHHHHHH
Confidence 999999999999999999999999999998 677888888 8888777665554
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=2.8e-06 Score=85.83 Aligned_cols=294 Identities=10% Similarity=-0.030 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc---CCCCcch---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 040576 286 VSWNCMIDGYAKIGNVTSARNCFDRM---CMRNVVS---WNILLALYVRCKDYCECLRLFDRMIRGDAKPNEA-SLMSVL 358 (641)
Q Consensus 286 ~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll 358 (641)
..|..+...+...|+.+.+.+.+... ...+... .......+...|++++|.+.+++..+. .|+.. .+.. .
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~ 83 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-h
Confidence 34455555555666666655555554 1222222 222334567788999999999888774 34433 3332 2
Q ss_pred HHHH----ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcC
Q 040576 359 TACA----NMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHG 431 (641)
Q Consensus 359 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 431 (641)
..+. ..+..+.+.+.+.. .....+........+...+...|++++|...+++..+ .+...+..+...|...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 2222 23445555554443 1111122334455666788889999999999988774 34567788888899999
Q ss_pred ChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHH-H--HHHHHHhhcCCHH
Q 040576 432 QGEKALEMFMEMEKRGP-TPND--ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHY-G--CMVDLLGRAGLMR 505 (641)
Q Consensus 432 ~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~ 505 (641)
++++|..++++...... .|+. ..|..+...+...|++++|..+++.+.......+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999998877532 1232 245567778888999999999999886411111221111 1 2233333444222
Q ss_pred HH------HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHHhcCC
Q 040576 506 DS------EELVSKL-PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPR---------DPGPYVLLSNIYASEGK 569 (641)
Q Consensus 506 ~A------~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~ 569 (641)
.+ ....... +.............++...|+.+.|...++.+....-. ........+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22 2221111 11111122234555678889999999999887653211 23455667778889999
Q ss_pred hHHHHHHHHHhhhC
Q 040576 570 WDEVENLRRIMKEK 583 (641)
Q Consensus 570 ~~~A~~~~~~m~~~ 583 (641)
+++|.+.+......
T Consensus 323 ~~~A~~~L~~al~~ 336 (355)
T cd05804 323 YATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.2e-06 Score=81.26 Aligned_cols=410 Identities=11% Similarity=-0.002 Sum_probs=246.0
Q ss_pred HHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcC
Q 040576 128 MKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDL-FVRNSLIHMYSVCG 206 (641)
Q Consensus 128 i~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g 206 (641)
..+.+..|+++.|+..|.+ -..- -++|..-|+.=..+++..|++++|.+=-..-++. .|+- ..|+.+..++.-.|
T Consensus 9 gnaa~s~~d~~~ai~~~t~-ai~l-~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTE-AIML-SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHH-HHcc-CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 3566778999999999984 3332 2447777888889999999999888766665554 4553 47888888888899
Q ss_pred CHHHHHHHHhcCCCC---CeeHHHHHHHHHHhCCChHHH-HHHHhhC-----CCCC--------chhHHHHHHHHhcCCC
Q 040576 207 EVLDARKVFEDGPVW---DLVTWNSMIDGYVKNREVGFA-RELFDFM-----PERD--------IFTWNSMISGYVDVGD 269 (641)
Q Consensus 207 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A-~~~~~~m-----~~~~--------~~~~~~ll~~~~~~g~ 269 (641)
++++|...|.++... +...++.+..++ ..+.+ .+.|..- ...+ ...|..++...-+...
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 999999999987654 344566666666 11111 1111111 0011 1122223222211100
Q ss_pred hHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHH-HHHHHh-----cCCC----------------------CcchHHH
Q 040576 270 MEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSA-RNCFDR-----MCMR----------------------NVVSWNI 321 (641)
Q Consensus 270 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A-~~~~~~-----~~~~----------------------~~~~~~~ 321 (641)
.+.. ... ...++.+.......+.- ...-.. +..| -..-...
T Consensus 161 ---~l~~-------~l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 161 ---SLKL-------YLN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred ---hhhc-------ccc-cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 0000 000 00111111110000000 000000 0000 0112445
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--c----hhHHHHHHHH
Q 040576 322 LLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKP--D----VLLSTSLLTM 395 (641)
Q Consensus 322 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~~li~~ 395 (641)
+.++..+..+++.|++-+....+.. -+..-++....++...|.+......-....+.|... + ......+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 6677777788888888888877743 333444555666777777777766666555544221 1 1122234457
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHH
Q 040576 396 YAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDA-TFICVLSACTHAGMVLEGWWY 474 (641)
Q Consensus 396 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 474 (641)
|.+.++++.|...|.+...+... -....+....++++.......-. .|... -...-...+.+.|++..|+..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 77888999999999886532111 11223344556666655554443 33322 222336677889999999999
Q ss_pred HHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040576 475 FDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPR 552 (641)
Q Consensus 475 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 552 (641)
|.++++ .-+-|...|....-+|.+.|.+.+|+.-.+.. ...|+ ...|..-..++....+++.|.+.|+++++.+|.
T Consensus 381 YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 381 YTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 999988 23445788999999999999999998876665 33455 446666677777888999999999999999999
Q ss_pred CCchHHHHHHHHHhc
Q 040576 553 DPGPYVLLSNIYASE 567 (641)
Q Consensus 553 ~~~~~~~l~~~~~~~ 567 (641)
+......+..++...
T Consensus 459 ~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 459 NAEAIDGYRRCVEAQ 473 (539)
T ss_pred hHHHHHHHHHHHHHh
Confidence 988877777777653
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=5.8e-06 Score=84.97 Aligned_cols=409 Identities=11% Similarity=0.086 Sum_probs=225.3
Q ss_pred CCCCCcccHHHHH--HHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHh-C-----
Q 040576 116 IQEPDAFMCNTIM--KSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKC-G----- 187 (641)
Q Consensus 116 ~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g----- 187 (641)
+..-|..|-.+|+ +.|...|+.+.|++-.+ .++ +...|..+.+.|.+.++++-|.-.+..|... |
T Consensus 721 le~Cd~~TRkaml~FSfyvtiG~MD~AfksI~-~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR 793 (1416)
T KOG3617|consen 721 LENCDESTRKAMLDFSFYVTIGSMDAAFKSIQ-FIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALR 793 (1416)
T ss_pred ccccCHHHHHhhhceeEEEEeccHHHHHHHHH-HHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHH
Confidence 3455666777776 45677899999988877 444 3467899999999888888888777666532 1
Q ss_pred ---CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCC-CchhHHHHHHH
Q 040576 188 ---FELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFMPER-DIFTWNSMISG 263 (641)
Q Consensus 188 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~ll~~ 263 (641)
-.++ .+-....-.....|.+++|..+|.+...- ..|=..|-..|++++|+++-+.-..- =..||..-...
T Consensus 794 ~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 794 RAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKY 867 (1416)
T ss_pred HHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHH
Confidence 1121 22222222234567788888887765542 23334566678888888877654211 12466666666
Q ss_pred HhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 040576 264 YVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMI 343 (641)
Q Consensus 264 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 343 (641)
+-..+|.+.|++.|++...+--.++..|.+ ++.......+++..+ ..|.-...-.-..|+.+.|+.+|....
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e------~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKE------YPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHh------ChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 667778888888887765443333333321 223333333443333 344445555566788888888877765
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH
Q 040576 344 RGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSM 423 (641)
Q Consensus 344 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 423 (641)
+ |-+++...|-.|+.++|-++-++- | |......|...|-..|++.+|..+|.+.. +|..-
T Consensus 940 D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnA 999 (1416)
T KOG3617|consen 940 D---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNA 999 (1416)
T ss_pred h---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHH
Confidence 4 455666677778877777665432 2 44555567777888888888888877653 23333
Q ss_pred HHHHHHcCC---------------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHH---------HHHhH
Q 040576 424 IMGYGMHGQ---------------GEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWY---------FDLMQ 479 (641)
Q Consensus 424 i~~~~~~~~---------------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~---------~~~~~ 479 (641)
|..|-.++- .-.|-.+|++. |.. +...+..|-+.|.+.+|+++ ++.+.
T Consensus 1000 IRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1000 IRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 333222221 11122222221 111 11223344555555555442 23333
Q ss_pred HhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-c--CCCC---
Q 040576 480 RIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLME-L--EPRD--- 553 (641)
Q Consensus 480 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~--~p~~--- 553 (641)
++..-..|+...+.-.+.++...++++|..++-... .+..-+..|.. .++..-+++.+++-- . +|+.
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e~~R 1144 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQLCKN-RNVRVTEEFAELMTPTKDDMPNEQER 1144 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHhc-CCCchhHHHHHhcCcCcCCCccHHHH
Confidence 322223345555555666666666666666654431 12222333322 223333333333321 1 1111
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 554 PGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
...+..++..|.++|.|..|.+-|.++
T Consensus 1145 ~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 136777888888999888877766554
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.88 E-value=3.1e-07 Score=82.96 Aligned_cols=160 Identities=8% Similarity=0.083 Sum_probs=121.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCC
Q 040576 424 IMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGL 503 (641)
Q Consensus 424 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 503 (641)
+..|...|+++.+....+++.. |. . .+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 4467788888776544433221 11 0 12235677788888887776 234558889999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 040576 504 MRDSEELVSKL-PMEA-GPALWGALLSA-CSTHSN--SELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRR 578 (641)
Q Consensus 504 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 578 (641)
+++|...|++. ...| +...+..+..+ +...|+ .++|..+++++++.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999987 3445 46677777776 467777 5999999999999999999999999999999999999999999
Q ss_pred HhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHH
Q 040576 579 IMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEI 623 (641)
Q Consensus 579 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l 623 (641)
++ .++.|.+.+ .+.+++.+
T Consensus 169 ~a------------------------L~l~~~~~~--r~~~i~~i 187 (198)
T PRK10370 169 KV------------------------LDLNSPRVN--RTQLVESI 187 (198)
T ss_pred HH------------------------HhhCCCCcc--HHHHHHHH
Confidence 99 566666666 67666553
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=1.4e-05 Score=91.58 Aligned_cols=356 Identities=8% Similarity=-0.021 Sum_probs=224.7
Q ss_pred HHHHHHhCCChHHHHHHHhhCCCCCch--hHHHHHHHHhcCCChHHHHHHHhhcCC----CCchHHHHHHHHHHhcCChH
Q 040576 229 MIDGYVKNREVGFARELFDFMPERDIF--TWNSMISGYVDVGDMEAANGLFDLMPF----RDVVSWNCMIDGYAKIGNVT 302 (641)
Q Consensus 229 li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~ 302 (641)
....+...|++.+|...+......+.. ............|+++.+...++.+.. .+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 344566677777777666655332211 111122334556788887777776631 22333344555667788999
Q ss_pred HHHHHHHhcC----CCC---c-----chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCC
Q 040576 303 SARNCFDRMC----MRN---V-----VSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNE----ASLMSVLTACANMGV 366 (641)
Q Consensus 303 ~A~~~~~~~~----~~~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~ 366 (641)
+|...+.... ..+ . .....+...+...|++++|...+++..+.-...+. .....+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 9888887651 111 1 11122334567889999999999988763111121 234455566778999
Q ss_pred HHHHHHHHHHHHHcCC---CC--chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHc
Q 040576 367 IDIGQWIHSYIQKCRI---KP--DVLLSTSLLTMYAKCGVMDLARNVFDNMTE-------K----NVVSWNSMIMGYGMH 430 (641)
Q Consensus 367 ~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~ 430 (641)
++.|...+.......- .+ .......+...+...|++++|...+++... + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999999887764311 11 123455667778889999999998876542 1 122344566677788
Q ss_pred CChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHH-----HHHHHHHhhc
Q 040576 431 GQGEKALEMFMEMEKR--GPTPN--DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHY-----GCMVDLLGRA 501 (641)
Q Consensus 431 ~~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~ 501 (641)
|++++|...+.+.... ...+. ...+..+.......|++++|.+.++.+............+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 9999999999887653 11122 2344445667778899999999998886521111111111 1122445568
Q ss_pred CCHHHHHHHHHhCCCC--CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCchHHHHHHHHHhcCC
Q 040576 502 GLMRDSEELVSKLPME--AGPA----LWGALLSACSTHSNSELGKIVAQHLMELEP------RDPGPYVLLSNIYASEGK 569 (641)
Q Consensus 502 g~~~~A~~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~ 569 (641)
|+.+.|.+++...... .... .+..+..++...|+.++|...++++..... .....+..++.+|.+.|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 9999999998776311 1111 134556668889999999999999877531 223467778899999999
Q ss_pred hHHHHHHHHHhhhCC
Q 040576 570 WDEVENLRRIMKEKE 584 (641)
Q Consensus 570 ~~~A~~~~~~m~~~~ 584 (641)
.++|...+.+..+..
T Consensus 747 ~~~A~~~L~~Al~la 761 (903)
T PRK04841 747 KSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987654
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.85 E-value=4.6e-06 Score=77.27 Aligned_cols=210 Identities=10% Similarity=0.019 Sum_probs=143.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHH---HHHHhCCChHHHHHHHhhC--CCCCchhHH-HHHHHH
Q 040576 191 DLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMI---DGYVKNREVGFARELFDFM--PERDIFTWN-SMISGY 264 (641)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m--~~~~~~~~~-~ll~~~ 264 (641)
++.-.--|...+...|.+.+|+.-|....+-|+..|.++. ..|...|+..-|+.=+.+. .+||-..-. .-...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4455566888888899999999999988888888887775 4788889998888888887 455543221 223467
Q ss_pred hcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 265 VDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIR 344 (641)
Q Consensus 265 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 344 (641)
.+.|.++.|..-|+.+.+.++.- +....++.+.-..++-.. ....+..+...|+...|+.....+++
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 89999999999999988654310 011111111111111111 12345556677888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 040576 345 GDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEK 415 (641)
Q Consensus 345 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 415 (641)
- .+.|...+..-..+|...|.+..|+.=+....+.. ..++...--+-..+...|+.+.++...++..+-
T Consensus 184 i-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 184 I-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred c-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 4 34566677777778888888888887777776654 234455555667788888888888888887753
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.4e-05 Score=84.05 Aligned_cols=223 Identities=12% Similarity=0.016 Sum_probs=125.8
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 040576 316 VVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTM 395 (641)
Q Consensus 316 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 395 (641)
+..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+++...++..-.|.+. +.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 456888888888888888887776543 355678888888888888888888888887776555543 457788
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 040576 396 YAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYF 475 (641)
Q Consensus 396 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 475 (641)
|++.+++.+.+++.. -||.........-|...|.++.|.-+|.. ...|..|...+...|++..|...-
T Consensus 1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877666543 34555555555555555555555554442 223444444555555555544333
Q ss_pred HHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 040576 476 DLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 476 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
+++ -+..+|..+-.+|...+.+.-|.-.= +.+--...-...|+..|...|-+++-+.+++..+.++.-+.+
T Consensus 1244 RKA-------ns~ktWK~VcfaCvd~~EFrlAQiCG--L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1244 RKA-------NSTKTWKEVCFACVDKEEFRLAQICG--LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred hhc-------cchhHHHHHHHHHhchhhhhHHHhcC--ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 222 12334444444444433333221110 000112223334555555555555555555555555555555
Q ss_pred hHHHHHHHHHhc
Q 040576 556 PYVLLSNIYASE 567 (641)
Q Consensus 556 ~~~~l~~~~~~~ 567 (641)
.|..|+-.|.+-
T Consensus 1315 mfTELaiLYsky 1326 (1666)
T KOG0985|consen 1315 MFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHHhc
Confidence 555555555443
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=1.5e-07 Score=90.02 Aligned_cols=246 Identities=10% Similarity=0.076 Sum_probs=158.9
Q ss_pred hcCChHHHHHHHHhcCCC----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 040576 297 KIGNVTSARNCFDRMCMR----NVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQW 372 (641)
Q Consensus 297 ~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 372 (641)
-.|++..++.-.+ .... +......+.++|...|+++.++. +..... .|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3466666654443 2111 22334456778888888776543 333322 5666655555554444344444444
Q ss_pred HHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 040576 373 IHSYIQKCRIK-PDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN 451 (641)
Q Consensus 373 ~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 451 (641)
-++........ .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 44333322322 23333444445677789999999998876 56677778889999999999999999999874 333
Q ss_pred HHHHHHHHHHHHh----hccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 040576 452 DATFICVLSACTH----AGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGA 525 (641)
Q Consensus 452 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~ 525 (641)
.+...+..++.. .+.+.+|.-+|+++.. ...+++.+.+.+.-++...|++++|.+++.+. ...|+ +.++..
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 444455554432 3368999999999876 45678888999999999999999999999886 33344 557777
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHhcCCCCC
Q 040576 526 LLSACSTHSNS-ELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 526 l~~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 554 (641)
++.+....|+. +.+.+.+.++....|+++
T Consensus 241 liv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 241 LIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 88777888887 778889999888889876
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=3.4e-06 Score=88.58 Aligned_cols=423 Identities=13% Similarity=0.030 Sum_probs=239.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhc---CCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCC-----chhHHHHHHHHh
Q 040576 194 VRNSLIHMYSVCGEVLDARKVFED---GPVWDLVTWNSMIDGYVKNREVGFARELFDFMPERD-----IFTWNSMISGYV 265 (641)
Q Consensus 194 ~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~ll~~~~ 265 (641)
.|..|...|+..-+...|.+.|+. +...|..++....+.|++...++.|..+.-..-+.+ ...|..+.-.+.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 678888888887788888888886 445567778888899999999999988844442211 123444555677
Q ss_pred cCCChHHHHHHHhhcCCC---CchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHH---HHHHHHHcCChHHHHHHH
Q 040576 266 DVGDMEAANGLFDLMPFR---DVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNI---LLALYVRCKDYCECLRLF 339 (641)
Q Consensus 266 ~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~ 339 (641)
+.++...++.-|+...+. |...|..++.+|..+|++..|.++|.+...-++..+.. ..-.-+..|++.+|+..+
T Consensus 574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 888888888888888764 36778888999999999999999998875544433221 223456788899988888
Q ss_pred HHHHHC------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH-------HHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 040576 340 DRMIRG------DAKPNEASLMSVLTACANMGVIDIGQWIHSY-------IQKCRIKPDVLLSTSLLTMYAKCGVMDLAR 406 (641)
Q Consensus 340 ~~m~~~------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~-------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 406 (641)
...... +..--..++..+...+...|-...+..+++. ...+....+...|-.+. +|.
T Consensus 654 ~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac 723 (1238)
T KOG1127|consen 654 GLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DAC 723 (1238)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHH
Confidence 776542 1111122233333333333333333333332 22222222222222222 223
Q ss_pred HHHhhcCCCChhH---HHHHHHHHHHcCCh---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--------hccHH
Q 040576 407 NVFDNMTEKNVVS---WNSMIMGYGMHGQG---E---KALEMFMEMEKRGPTPNDATFICVLSACTH--------AGMVL 469 (641)
Q Consensus 407 ~~~~~~~~~~~~~---~~~li~~~~~~~~~---~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--------~g~~~ 469 (641)
.+|-... |+.+. ...+..-+-..+.. | -+.+.+-.-.. ...+..++..++..|.+ ..+..
T Consensus 724 ~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 724 YIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 3333333 32111 11111101111111 1 01111111111 11123334444433322 12233
Q ss_pred HHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040576 470 EGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL--PMEAGPALWGALLSACSTHSNSELGKIVAQHL 546 (641)
Q Consensus 470 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 546 (641)
.|+..+.+.++ ...+ ...|+.|. .+...|.+.-|...|-+- ..+....+|..+...|....|++-|...+.++
T Consensus 801 ~Ai~c~KkaV~---L~ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 801 TAIRCCKKAVS---LCANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHH---HhhccHHHHHHHH-HhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhh
Confidence 56666666655 3333 34444443 446667777777766554 23344557877777788888888888888888
Q ss_pred HhcCCCCCchHHHHHHHHHhcCChHHHHHHHHH--hhhCCCcccCceE-EE----------Eeeeee------------c
Q 040576 547 MELEPRDPGPYVLLSNIYASEGKWDEVENLRRI--MKEKELEKAVGSS-LV----------HPGEFA------------S 601 (641)
Q Consensus 547 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~~~-~~----------~~~~~~------------~ 601 (641)
..++|.+...|.-.+.+....|+.-++..++.. ....+-.+.++.. |. ...+++ .
T Consensus 877 qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 877 QSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 888888887777777777777877777777766 2222222222222 11 011111 1
Q ss_pred ccccccCCCCchhhHHHHHHHHHHHHHhhhcccc
Q 040576 602 ESIVENCPPHRKCIVYSMLGEIGAQMKMCRRDVA 635 (641)
Q Consensus 602 ~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 635 (641)
.....-+|+..- .|...+.+...+++...+.+
T Consensus 957 ~~yf~~~p~~~f--Ay~~~gstlEhL~ey~~a~e 988 (1238)
T KOG1127|consen 957 SYYFLGHPQLCF--AYAANGSTLEHLEEYRAALE 988 (1238)
T ss_pred HHHHhcCcchhH--HHHHHHhHHHHHHHHHHHHH
Confidence 122356889888 99999998888887766554
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.73 E-value=1.2e-06 Score=82.50 Aligned_cols=181 Identities=11% Similarity=0.011 Sum_probs=122.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 040576 385 DVLLSTSLLTMYAKCGVMDLARNVFDNMTE--KN-V---VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPND--ATFI 456 (641)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~ 456 (641)
....+..++..+...|++++|...|+++.+ |+ . .++..+..++...|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455666777778888888888888887764 32 1 35677788888888888888888888875322111 1344
Q ss_pred HHHHHHHhh--------ccHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 040576 457 CVLSACTHA--------GMVLEGWWYFDLMQRIYKIEPKV-EHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALL 527 (641)
Q Consensus 457 ~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 527 (641)
.+..++... |++++|.+.|+.+.. ..|+. ..+..+... +...... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKRM----DYLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHHH----HHHHHHH-----------HHHHHHHH
Confidence 455555544 678888888888876 23432 222221111 0011100 00112455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPRDP---GPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
..+...|++++|...++++++..|+++ ..+..++.+|...|++++|...++.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 668899999999999999999987654 68899999999999999999999988654
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1.8e-05 Score=71.96 Aligned_cols=285 Identities=13% Similarity=0.059 Sum_probs=191.7
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHH-HHHH
Q 040576 123 MCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNS-LIHM 201 (641)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~ 201 (641)
-+++++..+.+..++.+|++++. .-.+. -+.+....+.+..++-...++..|-..++++-... |...-|.- -...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~-s~~Er-~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLG-SELER-SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHH-HHHhc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 46788888889999999999988 44443 23366678888888889999999999999987753 44444332 2244
Q ss_pred HHhcCCHHHHHHHHhcCCCC-CeeHHHHHHHH--HHhCCChHHHHHHHhhCC-CCCchhHHHHHHHHhcCCChHHHHHHH
Q 040576 202 YSVCGEVLDARKVFEDGPVW-DLVTWNSMIDG--YVKNREVGFARELFDFMP-ERDIFTWNSMISGYVDVGDMEAANGLF 277 (641)
Q Consensus 202 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~g~~~~A~~~~~~m~-~~~~~~~~~ll~~~~~~g~~~~a~~~~ 277 (641)
+.+.+.+.+|+++...+... +...-..-+.+ ....+++..+..++++.. +.+..+.+.......+.|+++.|++-|
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 55788999999998877653 22222222222 345788889999999985 566777777777778999999999999
Q ss_pred hhcCCCC----chHHHHHHHHHHhcCChHHHHHHHHhcCCC-----------------Cc---------------chHHH
Q 040576 278 DLMPFRD----VVSWNCMIDGYAKIGNVTSARNCFDRMCMR-----------------NV---------------VSWNI 321 (641)
Q Consensus 278 ~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----------------~~---------------~~~~~ 321 (641)
+...+-+ ...|+.-+ +..+.|+.+.|++...+++++ |+ ..+|.
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 9988643 44555444 455678999999998887332 11 11333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 040576 322 LLALYVRCKDYCECLRLFDRMIRG-DAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCG 400 (641)
Q Consensus 322 li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 400 (641)
-...+.+.|+++.|.+.+-.|.-. .-..|++|...+.-. -..+++-.+..-+..+.+.+ +....+|..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhH
Confidence 334466778888888888777432 234566666554422 22334444445555555543 344567777777888888
Q ss_pred CHHHHHHHHhhcCC
Q 040576 401 VMDLARNVFDNMTE 414 (641)
Q Consensus 401 ~~~~A~~~~~~~~~ 414 (641)
-++.|-.++.+-..
T Consensus 325 yf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 325 YFDLAADVLAENAH 338 (459)
T ss_pred HHhHHHHHHhhCcc
Confidence 78877777765443
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=2.7e-05 Score=78.67 Aligned_cols=251 Identities=11% Similarity=0.041 Sum_probs=135.0
Q ss_pred HHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCC
Q 040576 295 YAKIGNVTSARNCFDRMCM---RNVVSWNILLALYVR----CKDYCECLRLFDRMIRGDAKPNE-ASLMSVLTACANMGV 366 (641)
Q Consensus 295 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~ 366 (641)
+...|++++|.+.+++... .+...+.. ...+.. .+..+.+.+.+.. .....|+. .....+...+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence 4445666666666655422 22223321 212222 2333444444433 11222332 233344556677778
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C---Ch--hHHHHHHHHHHHcCChHHHHHH
Q 040576 367 IDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE--K---NV--VSWNSMIMGYGMHGQGEKALEM 439 (641)
Q Consensus 367 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~--~~~~~li~~~~~~~~~~~A~~~ 439 (641)
+++|...++...+.. +.+...+..+..+|...|++++|...+++..+ + +. ..|..+...+...|++++|..+
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888887777764 44456677777788888888888888877664 1 11 2355677788888888888888
Q ss_pred HHHHHHCCC-CCCHHHH-H--HHHHHHHhhccHHHHHHHHHHhHHh--hCCCCc--hHHHHHHHHHHhhcCCHHHHHHHH
Q 040576 440 FMEMEKRGP-TPNDATF-I--CVLSACTHAGMVLEGWWYFDLMQRI--YKIEPK--VEHYGCMVDLLGRAGLMRDSEELV 511 (641)
Q Consensus 440 ~~~m~~~g~-~p~~~~~-~--~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 511 (641)
+++...... .+..... . .++.-+...|....+.++ +.+... ...... .......+.++...|+.++|..++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888754322 1111111 1 223333334433333322 111110 011111 111124566778888999999888
Q ss_pred HhCC--CCC---CH----HHHHHHHH--HHHhcCCHHHHHHHHHHHHhcC
Q 040576 512 SKLP--MEA---GP----ALWGALLS--ACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 512 ~~~~--~~~---~~----~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
+.+. ... .. .+...++. ++...|+.++|...+..++.+.
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8762 111 11 11222333 3678899999999998877643
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=2.4e-06 Score=76.74 Aligned_cols=122 Identities=14% Similarity=0.060 Sum_probs=68.1
Q ss_pred HHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 040576 457 CVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL--PMEAGPALWGALLSACSTHS 534 (641)
Q Consensus 457 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g 534 (641)
.+-..+...|+-+....+...... ..+.+......++....+.|++.+|+..+++. ...+|...|+.+..+|.+.|
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 334444445555555555544432 12223334444555666666666666666655 23345556666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 535 NSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 535 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
+++.|...|.+++++.|+++..++.|+..|.-.|+++.|..++...
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666555
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=2e-06 Score=73.38 Aligned_cols=122 Identities=8% Similarity=-0.021 Sum_probs=99.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 040576 437 LEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL- 514 (641)
Q Consensus 437 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~- 514 (641)
..+|++..+. .|+. +..+...+...|++++|...|+.+.. ..| +...|..+..++.+.|++++|+..|++.
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556666653 4443 55567788899999999999999887 444 5778888999999999999999999987
Q ss_pred CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 515 PME-AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 515 ~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
... .++..+..+..++...|+.++|+..|++++++.|+++..+...+.+..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 333 456788889999999999999999999999999999999988877754
No 110
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=9.2e-06 Score=78.90 Aligned_cols=211 Identities=8% Similarity=-0.025 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh--HHHHHH
Q 040576 366 VIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCG-VMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQG--EKALEM 439 (641)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~--~~A~~~ 439 (641)
..++|......+++.. +-+..+|+....++...| ++++++..++++.+ .+..+|+...-.+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3334444444444332 112233333333344444 35566666655543 3334555444444444542 566777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhc---CC----HHHHHHHHH
Q 040576 440 FMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRA---GL----MRDSEELVS 512 (641)
Q Consensus 440 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~ 512 (641)
++++.+...+ |..+|.....++...|+++++++.++++++ .. .-+...|+....++.+. |. .++++++..
T Consensus 131 ~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~-~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLE-ED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 7777765433 556676666677777777777777777776 11 22345555544444333 22 245566654
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC------------------
Q 040576 513 KL-PMEAG-PALWGALLSACSTH----SNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEG------------------ 568 (641)
Q Consensus 513 ~~-~~~~~-~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------ 568 (641)
++ ...|+ ...|+-+...+... +...+|...+..+...+|+++.++..|+++|....
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 43 33344 55777777777663 34566888888888888999889999999998643
Q ss_pred ChHHHHHHHHHh
Q 040576 569 KWDEVENLRRIM 580 (641)
Q Consensus 569 ~~~~A~~~~~~m 580 (641)
..++|.++++.+
T Consensus 288 ~~~~a~~~~~~l 299 (320)
T PLN02789 288 DSTLAQAVCSEL 299 (320)
T ss_pred cHHHHHHHHHHH
Confidence 346788888877
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.61 E-value=1.2e-06 Score=74.37 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=84.0
Q ss_pred HHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040576 474 YFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 474 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
.++.+.. ..|+ ......++..+...|++++|.+.++.+ ...| +...|..+...+...|++++|...++++++.+
T Consensus 5 ~~~~~l~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG---LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc---CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444443 4453 455666778888889999999988886 3234 56678888888889999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 551 PRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 551 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
|+++..+..++.+|...|++++|...+++.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999988
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=5.9e-06 Score=89.82 Aligned_cols=200 Identities=13% Similarity=0.126 Sum_probs=158.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 040576 383 KPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE--------KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDAT 454 (641)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 454 (641)
+.+...|-..|......++.++|++++++... .-...|.+++..-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44566777788888888999999999888764 12346777777777778888888999998874 223446
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 040576 455 FICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG---PALWGALLSAC 530 (641)
Q Consensus 455 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~ 530 (641)
|..|...|.+.+.+++|.++++.|.++++ -....|..+++.+.++++-+.|.+++.++ ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888889999999999999999988665 55678888999999999989999988876 22233 33444455556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 040576 531 STHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELE 586 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 586 (641)
.++|+.+++..+|+..+.-.|.....|+.+++.-.+.|+.+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78899999999999999999998889999999999999999999999999877654
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=9.8e-05 Score=84.72 Aligned_cols=323 Identities=10% Similarity=-0.040 Sum_probs=203.4
Q ss_pred HHHHhcCCChHHHHHHHhhcCCCCc--hHHHHHHHHHHhcCChHHHHHHHHhcCC----CCcchHHHHHHHHHHcCChHH
Q 040576 261 ISGYVDVGDMEAANGLFDLMPFRDV--VSWNCMIDGYAKIGNVTSARNCFDRMCM----RNVVSWNILLALYVRCKDYCE 334 (641)
Q Consensus 261 l~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~ 334 (641)
...+...|++..|..........+. .............|+++.+...++.+.. .+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 3445556666666655544433221 1122223345567888888888877622 233333445556678899999
Q ss_pred HHHHHHHHHHCC--C----CCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCH
Q 040576 335 CLRLFDRMIRGD--A----KPNEA--SLMSVLTACANMGVIDIGQWIHSYIQKCRIKPD----VLLSTSLLTMYAKCGVM 402 (641)
Q Consensus 335 A~~~~~~m~~~g--~----~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~ 402 (641)
|..++....+.- . .+... ....+...+...|+++.+...++...+.--..+ ....+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 999998875531 1 11111 122233445688999999999998876321112 23445666778889999
Q ss_pred HHHHHHHhhcCC-------CC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhhc
Q 040576 403 DLARNVFDNMTE-------KN--VVSWNSMIMGYGMHGQGEKALEMFMEMEKR----GPT--P-NDATFICVLSACTHAG 466 (641)
Q Consensus 403 ~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g 466 (641)
++|...+++... +. ..++..+...+...|++++|...+++.... |.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999987752 11 234556677788999999999998886652 221 1 1223444555677789
Q ss_pred cHHHHHHHHHHhHHhhC-CCCc--hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHhcC
Q 040576 467 MVLEGWWYFDLMQRIYK-IEPK--VEHYGCMVDLLGRAGLMRDSEELVSKL----PMEAGPALWG-----ALLSACSTHS 534 (641)
Q Consensus 467 ~~~~a~~~~~~~~~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~-----~l~~~~~~~g 534 (641)
++++|...+.+...... ..+. ...+..+...+...|++++|.+.+++. ........+. ..+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 99999999988765211 1122 344555677888999999999888776 1111111111 1123345688
Q ss_pred CHHHHHHHHHHHHhcCCCCCch----HHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 535 NSELGKIVAQHLMELEPRDPGP----YVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 535 ~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
+.+.|...+.......+..... +..++.++...|++++|...+++..+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999987765533222211 456888899999999999999998653
No 114
>PLN02789 farnesyltranstransferase
Probab=98.60 E-value=1.5e-05 Score=77.50 Aligned_cols=188 Identities=12% Similarity=0.086 Sum_probs=138.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 040576 391 SLLTMYAKCGVMDLARNVFDNMTEK---NVVSWNSMIMGYGMHG-QGEKALEMFMEMEKRGPTPNDATFICVLSACTHAG 466 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 466 (641)
.+-..+...++.++|+..++.+.+. +..+|+.-..++...| ++++++..++++.+...+ +..+|..-...+.+.|
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC
Confidence 3334455667888999999888753 4456776667777777 579999999999987544 4456665555555666
Q ss_pred cH--HHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc---CC----
Q 040576 467 MV--LEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTH---SN---- 535 (641)
Q Consensus 467 ~~--~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~---g~---- 535 (641)
.. +++..+++++.+ .-+-+..+|+...-++.+.|++++|++.++++ . ...+...|+.....+... |.
T Consensus 121 ~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 53 677888888877 22335778888888888999999999999998 2 234566788777666554 22
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc----CChHHHHHHHHHhh
Q 040576 536 SELGKIVAQHLMELEPRDPGPYVLLSNIYASE----GKWDEVENLRRIMK 581 (641)
Q Consensus 536 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~ 581 (641)
.+++.....++++.+|+|..+|..+..++... ++..+|.+.+.+..
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 35677888899999999999999999999883 45567888887763
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=3e-06 Score=86.35 Aligned_cols=188 Identities=14% Similarity=0.183 Sum_probs=108.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040576 382 IKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSA 461 (641)
Q Consensus 382 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 461 (641)
.+|--.....+...+...|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.++ +|++.-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 3444445556666677777777777777664 35556666777777777777766665552 5666666666666
Q ss_pred HHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 040576 462 CTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELG 539 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 539 (641)
.....-+++|.++++..... .-..+.....+.++++++.+.++.- ...| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 66666666666666554331 1111122223355566666655542 2222 234555555555566666666
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040576 540 KIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKE 584 (641)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 584 (641)
...|.....++|++...|+.+..+|.+.|+..+|...+++..+-+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 666666666666666666666666666666666666666555444
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=9.6e-08 Score=57.91 Aligned_cols=32 Identities=34% Similarity=0.511 Sum_probs=23.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 040576 187 GFELDLFVRNSLIHMYSVCGEVLDARKVFEDG 218 (641)
Q Consensus 187 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 218 (641)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777765
No 117
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=5.2e-06 Score=82.54 Aligned_cols=139 Identities=9% Similarity=0.070 Sum_probs=106.6
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHH
Q 040576 434 EKALEMFMEME-KRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELV 511 (641)
Q Consensus 434 ~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 511 (641)
....++|-++. ..+..+|+.....|.-.|.-.|++++|+..|+.+.. ++|+ ...||.|.-.++...+.++|+..|
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 34445555544 445456777777888888889999999999999987 6676 678999999999999999999999
Q ss_pred HhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----C-----chHHHHHHHHHhcCChHHHHH
Q 040576 512 SKL-PMEAGP-ALWGALLSACSTHSNSELGKIVAQHLMELEPRD-----P-----GPYVLLSNIYASEGKWDEVEN 575 (641)
Q Consensus 512 ~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----~-----~~~~~l~~~~~~~g~~~~A~~ 575 (641)
+++ ..+|+- ..+..|.-+|...|.+++|...|-.++.+.+.+ . .+|..|=.++.-.++.|-+.+
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 987 677874 477889999999999999999999988776541 1 356666666666666654443
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.54 E-value=1.7e-06 Score=72.36 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
......+...+...|++++|..+|+-. ...| +..-|..|..+|...|++++|+..|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445556677788999999999999987 3334 46678899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhC
Q 040576 566 SEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 566 ~~g~~~~A~~~~~~m~~~ 583 (641)
..|+.+.|.+-|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999998654
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=1.6e-05 Score=81.16 Aligned_cols=210 Identities=10% Similarity=0.098 Sum_probs=165.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 040576 287 SWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGV 366 (641)
Q Consensus 287 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 366 (641)
.-..+...+...|-...|..+|++. ..|..+|.+|...|+..+|..+..+-.+ -+||+..|..+....-...-
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 4456778889999999999999975 4588889999999999999998888777 46888888888877777777
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 040576 367 IDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEM 443 (641)
Q Consensus 367 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m 443 (641)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-.+..+..+.++++.|.+.|..-
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 77777777665432 112222333447899999999987664 24468888888999999999999999988
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 444 EKRGPTPND-ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 444 ~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
... .||. ..|+.+-.+|.+.|+..+|...+.+..+ .. .-+...|...+-.....|.+++|++.+.++
T Consensus 546 vtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 546 VTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 774 6664 5899999999999999999999999988 55 344566777778888999999999998876
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=2.2e-07 Score=56.28 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=24.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 040576 381 RIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMT 413 (641)
Q Consensus 381 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 413 (641)
|+.||..+|++||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.47 E-value=0.0021 Score=64.01 Aligned_cols=145 Identities=14% Similarity=0.090 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHH
Q 040576 367 IDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE-----KNVVSWNSMIMGYGMHGQGEKALEMFM 441 (641)
Q Consensus 367 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~ 441 (641)
.+....+++.+...-...-.-+|..+++.--+..-+..|+.+|.+..+ .++..+++++.-||. ++..-|..+|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 444555555555433222334555666666666677777777777664 255566667766654 55677777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 442 EMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK--VEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 442 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
--.+. ..-++.-....+.-+.+.++-..+..+|++... .++.|+ ...|..+++-=..-|++..+.++-+++
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~-s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT-SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh-ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 65443 111223333455566666777777777777776 355554 466777777767777777777665554
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=2.5e-05 Score=70.38 Aligned_cols=156 Identities=10% Similarity=0.070 Sum_probs=113.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh
Q 040576 421 NSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR 500 (641)
Q Consensus 421 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 500 (641)
..+-..+...|+.+....+........ .-|.......+....+.|++.+|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 455566777777777777766654431 22334444567777788888888888888876 455667888888888888
Q ss_pred cCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 040576 501 AGLMRDSEELVSKL-PME-AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRR 578 (641)
Q Consensus 501 ~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 578 (641)
.|++++|..-|.+. ... .++...+.+...+.-.|+.+.|+.++..+....+.++.+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888877766 222 3456677788888888888888888888888888788888888888888888888877665
Q ss_pred H
Q 040576 579 I 579 (641)
Q Consensus 579 ~ 579 (641)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=4.6e-05 Score=81.77 Aligned_cols=131 Identities=12% Similarity=0.020 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 040576 449 TPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGA 525 (641)
Q Consensus 449 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~ 525 (641)
..+...+..|.....+.|.+++|..+++.+.+ +.|+ ......++..+.+.+++++|+..+++. ...|+ ......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 33455666666666666777777777776665 4555 344555666666777777777766665 33444 334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
+..++.+.|++++|..+|+++...+|+++.++..++.++...|+.++|...|++..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666777777777777777776666666777777777777777777777776643
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=2.4e-05 Score=70.76 Aligned_cols=155 Identities=12% Similarity=0.133 Sum_probs=114.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 040576 393 LTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGW 472 (641)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 472 (641)
+.+|...|+++.+....+.+..+. ..|...++.+++...+++..+.. ..|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888877655554433221 01123566788888888877764 336778888889999999999999
Q ss_pred HHHHHhHHhhCCCC-chHHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040576 473 WYFDLMQRIYKIEP-KVEHYGCMVDLL-GRAGL--MRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHL 546 (641)
Q Consensus 473 ~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 546 (641)
..|++..+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 445 467777788764 67777 59999999987 3344 4567888888899999999999999999
Q ss_pred HhcCCCCCchHHH
Q 040576 547 MELEPRDPGPYVL 559 (641)
Q Consensus 547 ~~~~p~~~~~~~~ 559 (641)
+++.|++..-+..
T Consensus 171 L~l~~~~~~r~~~ 183 (198)
T PRK10370 171 LDLNSPRVNRTQL 183 (198)
T ss_pred HhhCCCCccHHHH
Confidence 9999887655443
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=6.6e-06 Score=88.11 Aligned_cols=127 Identities=8% Similarity=0.007 Sum_probs=113.3
Q ss_pred CCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 040576 484 IEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPA-LWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLS 561 (641)
Q Consensus 484 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 561 (641)
...++..+-.|.....+.|.+++|+.+++.. ...|+.. .+..+..++.+.+.+++|...+++++..+|+++..+..++
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 4556888999999999999999999999987 5667755 6778888999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhccccc
Q 040576 562 NIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRRDVAS 636 (641)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 636 (641)
.++.+.|++++|..+|+++ ...+|++.+ ++..++.+..++|+..++.+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~------------------------~~~~p~~~~--~~~~~a~~l~~~G~~~~A~~~ 210 (694)
T PRK15179 162 KSWDEIGQSEQADACFERL------------------------SRQHPEFEN--GYVGWAQSLTRRGALWRARDV 210 (694)
T ss_pred HHHHHhcchHHHHHHHHHH------------------------HhcCCCcHH--HHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999 557888888 999999998888887776543
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=1.9e-05 Score=74.34 Aligned_cols=181 Identities=13% Similarity=0.029 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hh---H
Q 040576 349 PNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPD---VLLSTSLLTMYAKCGVMDLARNVFDNMTE--KN-VV---S 419 (641)
Q Consensus 349 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~ 419 (641)
.....+......+...|+++.|...++.+.... +.+ ...+..+..+|...|++++|...++++.+ |+ .. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 445677788888999999999999999998764 222 24667788999999999999999999874 32 22 4
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHH
Q 040576 420 WNSMIMGYGMH--------GQGEKALEMFMEMEKRGPTPNDA-TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEH 490 (641)
Q Consensus 420 ~~~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 490 (641)
+..+..++... |++++|...|+++... .|+.. ....+... +.... ... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~------~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRN------RLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHH------HHH---------HH
Confidence 66666667655 7889999999999886 44433 22211111 00000 000 11
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040576 491 YGCMVDLLGRAGLMRDSEELVSKL----PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEP 551 (641)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 551 (641)
...+...|.+.|++++|+..+++. +..| ....+..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 224567788999999999988876 2223 245788888899999999999998887766554
No 127
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=1.4e-06 Score=79.84 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=90.3
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHH
Q 040576 496 DLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEV 573 (641)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 573 (641)
+-+.+.+++++|+..|.+. ...|. ++.|..-..+|.+.|.++.|++..+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456778888888888876 44444 455666777788899999999999999999999888999999999999999999
Q ss_pred HHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 040576 574 ENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCR 631 (641)
Q Consensus 574 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~ 631 (641)
++.|++. .+++|+++. ....|+....++++..
T Consensus 169 ~~aykKa------------------------LeldP~Ne~--~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKA------------------------LELDPDNES--YKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhh------------------------hccCCCcHH--HHHHHHHHHHHhcCCC
Confidence 9988887 788899988 8888888888887766
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=0.0002 Score=70.26 Aligned_cols=116 Identities=19% Similarity=0.135 Sum_probs=69.8
Q ss_pred HhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 040576 463 THAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGK 540 (641)
Q Consensus 463 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~ 540 (641)
...|.+++|+..++.+.+ ..+-|+..+....+.+.+.|+.++|.+.++++ ...|+ ...+..+..++.+.|+.++|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 345666666666666655 22233444445566666666666666666665 33444 445556666666666666666
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 541 IVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
..++....-+|+++..|..|+.+|...|+..+|....-++
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6666666666666666666666666666555555544443
No 129
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=8.1e-05 Score=81.39 Aligned_cols=230 Identities=13% Similarity=0.138 Sum_probs=139.9
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHH
Q 040576 315 NVVSWNILLALYVRCKDYCECLRLFDRMIRG-DAKPNE---ASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLST 390 (641)
Q Consensus 315 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 390 (641)
....|-..|....+.++.++|.+++++.+.. +++-.. -.|.+++..-..-|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3456777777777888888888888877653 111111 235555555555566666777777776642 2345566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhc
Q 040576 391 SLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDA-TFICVLSACTHAG 466 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g 466 (641)
.|...|.+.+++++|.++|+.|.+ .....|...+..+.++++.+.|..++.+..+.=.+-.+. ...-.+..-.+.|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 777777777777777777777764 345667777777777777777777777776642221222 2222333445667
Q ss_pred cHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 040576 467 MVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL---PMEAG--PALWGALLSACSTHSNSELGKI 541 (641)
Q Consensus 467 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~a~~ 541 (641)
+.+.+..+|+.... ..+-....|+.++++=.++|+.+.+..+|++. ...|. -..|.-.+..-..+|+-+.++.
T Consensus 1615 DaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 77777777777765 23334566777777777777777777777765 11111 2344555555555666555555
Q ss_pred HHHHHHh
Q 040576 542 VAQHLME 548 (641)
Q Consensus 542 ~~~~~~~ 548 (641)
+-.++.+
T Consensus 1693 VKarA~E 1699 (1710)
T KOG1070|consen 1693 VKARAKE 1699 (1710)
T ss_pred HHHHHHH
Confidence 5554443
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=6.1e-05 Score=67.78 Aligned_cols=242 Identities=13% Similarity=0.067 Sum_probs=158.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 040576 323 LALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVM 402 (641)
Q Consensus 323 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 402 (641)
++-+.-.|.+..++..-....... -+...-..+-.+|...|...... ..+.... .+.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 556777788888877666554432 33444444556676666654332 2222222 33333333333333334443
Q ss_pred HHHH-HHHhhcCCC---ChhHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Q 040576 403 DLAR-NVFDNMTEK---NVVSWNS-MIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDL 477 (641)
Q Consensus 403 ~~A~-~~~~~~~~~---~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 477 (641)
++-. ++.+.+..+ +..++.. -...|+..|++++|++...... +......=+..+.+..+.+-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 334444432 2223333 3456888999999999887622 333333334556788899999999999
Q ss_pred hHHhhCCCCchHHHHHHHHHH----hhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040576 478 MQRIYKIEPKVEHYGCMVDLL----GRAGLMRDSEELVSKLP--MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEP 551 (641)
Q Consensus 478 ~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 551 (641)
|.+ + .+..+.+.|..++ ...+...+|.-+|++|. ..|++.+.+....++...|++++|+.+++.++..++
T Consensus 163 mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 987 2 2344555555554 45668999999999993 568899999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCChHHH-HHHHHHh
Q 040576 552 RDPGPYVLLSNIYASEGKWDEV-ENLRRIM 580 (641)
Q Consensus 552 ~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m 580 (641)
++|.++..++.+-...|+-.++ .+.+.+.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 9999999998887778876554 4456666
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.39 E-value=9.6e-05 Score=80.12 Aligned_cols=147 Identities=11% Similarity=0.078 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040576 388 LSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTH 464 (641)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 464 (641)
.+..+..+|-+.|+.++|..+|+++.+ .|+.+.|.+.-.|... +.++|.+++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555555555666666665555553 3444555555555555 555555555554432 333
Q ss_pred hccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040576 465 AGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVA 543 (641)
Q Consensus 465 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (641)
.+++..+.++|.++.. ..|+ ...+..+.+..... .....-..++..+...|...++++++..++
T Consensus 182 ~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 3455555555555554 1222 22222222111111 111122334445556677777777777778
Q ss_pred HHHHhcCCCCCchHHHHHHHHH
Q 040576 544 QHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 544 ~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
+.+++.+|.|..+..-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 8777777777777777777665
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00034 Score=63.16 Aligned_cols=246 Identities=12% Similarity=0.065 Sum_probs=159.7
Q ss_pred cCChHHHHHHHHhc-CC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHH
Q 040576 298 IGNVTSARNCFDRM-CM-RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDI-GQWIH 374 (641)
Q Consensus 298 ~~~~~~A~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~ 374 (641)
.|.+..++..-... .. .++..-.-+-++|...|.+...+.-. .. |-.|....+..+.......++.+. ..++.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 34455444443333 22 23333444567777777765543322 22 223444444444444444454433 33455
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 040576 375 SYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDAT 454 (641)
Q Consensus 375 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 454 (641)
+.+.......+......-...|+..|++++|++...... +..+.-.=+..+.+..+.+-|.+.+++|.+- . +..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--d-ed~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI--D-EDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--c-hHHH
Confidence 556555555554445555667889999999999998833 3333333455667788899999999999873 2 6677
Q ss_pred HHHHHHHHHh----hccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 040576 455 FICVLSACTH----AGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL--PMEAGPALWGALLS 528 (641)
Q Consensus 455 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~ 528 (641)
.+.|..++.+ .+.+..|.-+|+++.. ...|+..+.+....++...|++++|..++++. ....++.+...++-
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 8777777654 4578899999999976 47788889999999999999999999999987 33455666666666
Q ss_pred HHHhcCC-HHHHHHHHHHHHhcCCCCC
Q 040576 529 ACSTHSN-SELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 529 ~~~~~g~-~~~a~~~~~~~~~~~p~~~ 554 (641)
.-...|. .+.-.+.+.++....|.++
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 5555554 4555667777777777765
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00011 Score=65.70 Aligned_cols=179 Identities=9% Similarity=0.119 Sum_probs=131.4
Q ss_pred hcCCHHHHHHHHhhcCC--------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhhcc
Q 040576 398 KCGVMDLARNVFDNMTE--------KNV-VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICV-LSACTHAGM 467 (641)
Q Consensus 398 ~~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~ 467 (641)
...+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++.++- |...-...+ ..-+...|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 45678888888887763 222 234555556677888999999999988763 443322222 223445789
Q ss_pred HHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040576 468 VLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL--PMEAGPALWGALLSACSTHSNSELGKIVAQH 545 (641)
Q Consensus 468 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (641)
+++|+++++.+.. .-+.|..++-.-+-..-..|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-++++
T Consensus 102 ~~~A~e~y~~lL~--ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLE--DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhc--cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999999987 22445666666666677778877888776665 3457888999999999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHhcC---ChHHHHHHHHHh
Q 040576 546 LMELEPRDPGPYVLLSNIYASEG---KWDEVENLRRIM 580 (641)
Q Consensus 546 ~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m 580 (641)
++=..|-++..+..+++++.-.| +++-|.+++.+.
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999989999999877655 556677888877
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.31 E-value=0.0079 Score=63.70 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccc
Q 040576 522 LWGALLSACSTHSN---SELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKA 588 (641)
Q Consensus 522 ~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 588 (641)
+.+.|+..|.+.++ +-+|+.+++......|.|..+-..++.+|.-.|-+..|.++++.+--++|+.+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 34566677777766 45677777888888888888888888999989999999999998877776653
No 135
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.31 E-value=9.5e-06 Score=80.82 Aligned_cols=110 Identities=10% Similarity=0.058 Sum_probs=91.6
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHH
Q 040576 495 VDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDE 572 (641)
Q Consensus 495 i~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 572 (641)
...+...|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|+++..|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 45566788888888888876 3334 455777788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhh
Q 040576 573 VENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMC 630 (641)
Q Consensus 573 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~ 630 (641)
|+..+++. .+++|++.. +...++.+...+.+.
T Consensus 89 A~~~~~~a------------------------l~l~P~~~~--~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 89 AKAALEKG------------------------ASLAPGDSR--FTKLIKECDEKIAEE 120 (356)
T ss_pred HHHHHHHH------------------------HHhCCCCHH--HHHHHHHHHHHHHhh
Confidence 99999988 778889888 888888888877553
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=0.00015 Score=71.16 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=111.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHH
Q 040576 420 WNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATF-ICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDL 497 (641)
Q Consensus 420 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 497 (641)
+.-....+...|++++|+..++.+... .|+...| ......+.+.++.++|.+.++++.. ..|+ ....-.+..+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHH
Confidence 333344455678999999999998876 5555544 4456678899999999999999987 5666 5556678899
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHH
Q 040576 498 LGRAGLMRDSEELVSKL--PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVEN 575 (641)
Q Consensus 498 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 575 (641)
|.+.|++.+|+.+++.. ..+.++..|..|..+|...|+..++... .+..|.-.|+|++|+.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHH
Confidence 99999999999999886 3445677899999999999988766544 5677888999999999
Q ss_pred HHHHhhhC
Q 040576 576 LRRIMKEK 583 (641)
Q Consensus 576 ~~~~m~~~ 583 (641)
.+....++
T Consensus 447 ~l~~A~~~ 454 (484)
T COG4783 447 FLMRASQQ 454 (484)
T ss_pred HHHHHHHh
Confidence 99888655
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=2.7e-05 Score=77.20 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=96.5
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 040576 456 ICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTH 533 (641)
Q Consensus 456 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 533 (641)
..|+..+...++++.|.++|+++.+ ..|+ ....++..+...++-.+|++++++. ...| +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~---~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRE---RDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHh---cCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 4456666677888888888888877 2354 3445777777788888888888776 2233 455566666668899
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 534 SNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 534 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
++++.|..+.+++.++.|++..+|..|+.+|.+.|++++|+-.+..+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998875
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=9.3e-05 Score=66.12 Aligned_cols=196 Identities=13% Similarity=0.119 Sum_probs=145.1
Q ss_pred HccCCHHHHHHHHHHHHH---cC-CCCchh-HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH---HHHHHHcCCh
Q 040576 362 ANMGVIDIGQWIHSYIQK---CR-IKPDVL-LSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSM---IMGYGMHGQG 433 (641)
Q Consensus 362 ~~~g~~~~a~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~ 433 (641)
....+.++..+++..+.. .| ..++.. +|..++-+...+|+.+.|...++++...-+.++... ..-+-..|++
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 345678888888888764 34 555554 455667777889999999999998875322222221 2234567999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHh
Q 040576 434 EKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSK 513 (641)
Q Consensus 434 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 513 (641)
++|+++|+...+.+ +-|..++..=+...-..|+--+|++-+....+ .+.-|.+.|..+.+.|...|++++|.-.+++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999999999876 33566777777777777888899888888877 4778899999999999999999999999999
Q ss_pred C-CCCCC-HHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 040576 514 L-PMEAG-PALWGALLSACS---THSNSELGKIVAQHLMELEPRDPGPYVLL 560 (641)
Q Consensus 514 ~-~~~~~-~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 560 (641)
+ -.+|- +..+..+...+. ...+.+.|...|.+++++.|.+...+.-+
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 8 34454 445566666533 34478889999999999999665444333
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.23 E-value=1.7e-05 Score=65.60 Aligned_cols=91 Identities=13% Similarity=0.052 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHH
Q 040576 490 HYGCMVDLLGRAGLMRDSEELVSKL-PMEAG----PALWGALLSACSTHSNSELGKIVAQHLMELEPRD---PGPYVLLS 561 (641)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 561 (641)
++..++..+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...++.+....|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566666677777777777665 11222 2345556666777777777777777777776664 34567777
Q ss_pred HHHHhcCChHHHHHHHHHh
Q 040576 562 NIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~m 580 (641)
.++.+.|++++|.+.++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHhCChHHHHHHHHHH
Confidence 7777777777777777777
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=6.7e-05 Score=74.43 Aligned_cols=128 Identities=12% Similarity=0.062 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 040576 386 VLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHA 465 (641)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 465 (641)
......|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++..+.. +-+...+..-...|.+.
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34455667777788999999999999998887788889999999999999999999998763 22555666666778899
Q ss_pred ccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 040576 466 GMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKLPME 517 (641)
Q Consensus 466 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 517 (641)
++++.|.++.+++.. ..|+ ..+|..|+.+|...|++++|+..++.+|.-
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999988 5666 679999999999999999999999998733
No 141
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.19 E-value=3.1e-06 Score=61.77 Aligned_cols=67 Identities=19% Similarity=0.405 Sum_probs=57.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCC
Q 040576 531 STHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPP 610 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 610 (641)
...|++++|+..++++++.+|+++..+..++.+|.+.|++++|.++++++ ...+|+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~------------------------~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL------------------------LKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC------------------------HGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------HHHCcC
Confidence 46799999999999999999999999999999999999999999999998 566777
Q ss_pred CchhhHHHHHHHH
Q 040576 611 HRKCIVYSMLGEI 623 (641)
Q Consensus 611 ~~~~~~~~~l~~l 623 (641)
+.. .+.++..|
T Consensus 58 ~~~--~~~l~a~i 68 (68)
T PF14559_consen 58 NPE--YQQLLAQI 68 (68)
T ss_dssp HHH--HHHHHHHH
T ss_pred HHH--HHHHHhcC
Confidence 766 66666543
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.00067 Score=73.81 Aligned_cols=219 Identities=12% Similarity=0.108 Sum_probs=117.2
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHH
Q 040576 314 RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLM-SVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSL 392 (641)
Q Consensus 314 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 392 (641)
.+...|..|+..|...+++++|.++.+...+ ..|+...+. .+...+.+.++.+.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 3445677777777777888888877776555 345443322 222234444443333222 22
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHH
Q 040576 393 LTMYAKCGVMDLARNVFDNMTE--KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLE 470 (641)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 470 (641)
++......++.-+..+...|.+ .+..++..+..+|-+.|+.++|..+|+++.+..+ -|....+.+...|+.. +.++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHH
Confidence 2222233333222222223322 2233555666677777777777777777776542 2455666666666666 6777
Q ss_pred HHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 471 GWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPA-LWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 471 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
|.+++.++.. .|...+++.++.+++.++ ...|+.. .+..+......+-..
T Consensus 168 A~~m~~KAV~----------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~------------ 219 (906)
T PRK14720 168 AITYLKKAIY----------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF------------ 219 (906)
T ss_pred HHHHHHHHHH----------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc------------
Confidence 7666666655 144455666666666665 2222221 112122111111001
Q ss_pred cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 549 LEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 549 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
..-...+.-+-..|-..++|+++.++++.+.+.
T Consensus 220 --~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 220 --TRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred --chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 112234555667788889999999999999543
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.13 E-value=9.7e-05 Score=62.62 Aligned_cols=113 Identities=8% Similarity=0.023 Sum_probs=82.7
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 040576 439 MFMEMEKRGPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PM 516 (641)
Q Consensus 439 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 516 (641)
.+++.... .|+ ......+...+...|++++|.+.|+.+.. . .+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA-Y-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555553 343 33455666677788888888888888876 2 2335677778888888888888888888876 23
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 040576 517 EA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 517 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
.| +...+..+...+...|+.++|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 33 4567777788888899999999999999999888765
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00014 Score=62.40 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=59.2
Q ss_pred hccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhcCCHHH
Q 040576 465 AGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKLP-MEAGPA----LWGALLSACSTHSNSEL 538 (641)
Q Consensus 465 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~ 538 (641)
.++...+...++.+.+.++-.+ .....-.+...+...|++++|.+.|+... ..|++. ....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555222111 12223334455556666666666666552 112321 23334455566666666
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 539 GKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 539 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
|+..++.. .-.+-.+..+..++++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666442 222233445666677777777777777766653
No 145
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.05 E-value=8.7e-06 Score=58.74 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=50.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
+...+...|++++|+..|+.+++..|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566888999999999999999999999999999999999999999999999998543
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=9.2e-06 Score=50.04 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 040576 317 VSWNILLALYVRCKDYCECLRLFDRMIRGDAKPN 350 (641)
Q Consensus 317 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 350 (641)
.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999887
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.02 E-value=1.3e-05 Score=58.70 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-ChHHHHHHHHHhhh
Q 040576 519 GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEG-KWDEVENLRRIMKE 582 (641)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 582 (641)
++..|..+...+...|++++|+..|+++++++|+++..|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678889999999999999999999999999999999999999999999 79999999999854
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00049 Score=65.98 Aligned_cols=159 Identities=9% Similarity=0.011 Sum_probs=115.0
Q ss_pred hHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhhccHHHHHHHHHHhHHhhCCCCchHH----
Q 040576 418 VSWNSM-IMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLS--ACTHAGMVLEGWWYFDLMQRIYKIEPKVEH---- 490 (641)
Q Consensus 418 ~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---- 490 (641)
..|..+ ..++...|++++|...--...+.. ++ ..+...++ ++.-.++.+.|...|++... +.|+-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhH
Confidence 344444 345677889998888777666542 11 12223333 34456888888888888766 4454221
Q ss_pred ---------HHHHHHHHhhcCCHHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 040576 491 ---------YGCMVDLLGRAGLMRDSEELVSKL-P-----MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 491 ---------~~~li~~~~~~g~~~~A~~~~~~~-~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
+..=.+-..+.|++.+|.+.|.+. . .+|+...|........+.|+.++|+...+++.+++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 111123456889999999999987 3 3344556666666788999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 556 PYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
.|..-++++...++|++|.+-+++..+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999854
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=1.1e-05 Score=49.73 Aligned_cols=34 Identities=44% Similarity=0.718 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 040576 418 VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN 451 (641)
Q Consensus 418 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 451 (641)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3689999999999999999999999999998887
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.01 E-value=6.5e-05 Score=58.81 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=74.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 040576 491 YGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEG 568 (641)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 568 (641)
+..++..+...|++++|+..+++. ...|+ ...+..+...+...|++++|...++.+....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888876 22333 3566777777888899999999999999988888888889999999999
Q ss_pred ChHHHHHHHHHhhhC
Q 040576 569 KWDEVENLRRIMKEK 583 (641)
Q Consensus 569 ~~~~A~~~~~~m~~~ 583 (641)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887543
No 151
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.99 E-value=0.01 Score=57.70 Aligned_cols=106 Identities=11% Similarity=0.084 Sum_probs=70.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHH
Q 040576 392 LLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEG 471 (641)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 471 (641)
.+.-+...|+...|.++-.+..-|+-.-|...+.+|+..++|++-..+... +-++..|..++.+|.+.|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344555667777777777777777777788888888888887766654321 11346677777777777777777
Q ss_pred HHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 472 WWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 472 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
..+..++. +..-+..|.++|++.+|.+.--+.
T Consensus 257 ~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 257 SKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 77765521 133466777777777776664443
No 152
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.4e-05 Score=48.87 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 040576 317 VSWNILLALYVRCKDYCECLRLFDRMIRGDAKP 349 (641)
Q Consensus 317 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 349 (641)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=1e-05 Score=61.94 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=44.3
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHH
Q 040576 501 AGLMRDSEELVSKL-PMEA---GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENL 576 (641)
Q Consensus 501 ~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (641)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35555555555555 1112 333444456666666666666666666 555555555566667777777777777776
Q ss_pred HHH
Q 040576 577 RRI 579 (641)
Q Consensus 577 ~~~ 579 (641)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 154
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.95 E-value=3.8e-05 Score=56.92 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 527 LSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
...|...+++++|..+++++++++|+++..+...+.+|.+.|++++|.+.+++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999993
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.94 E-value=0.00067 Score=58.15 Aligned_cols=126 Identities=12% Similarity=0.054 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc--hHHHHHH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN--DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK--VEHYGCM 494 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 494 (641)
.|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+.. ....|+ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHH
Confidence 344445554 36777878777888777532211 12333345667778888888888888877 332222 2234456
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040576 495 VDLLGRAGLMRDSEELVSKLPME-AGPALWGALLSACSTHSNSELGKIVAQHL 546 (641)
Q Consensus 495 i~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 546 (641)
...+...|++++|+..++..+.. ..+..+......+...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788888888888888776422 23345556666788888888888888765
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00011 Score=67.63 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=49.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHH
Q 040576 427 YGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMR 505 (641)
Q Consensus 427 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 505 (641)
+.+.++|.+|+..|.+.++.... |.+-|..-..+|.+.|.++.|++-.+..+. +.|. ...|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcHH
Confidence 44555566666666655553211 344444555555555655555555555544 3343 445555555555555555
Q ss_pred HHHHHHHhC-CCCCCHHHHH
Q 040576 506 DSEELVSKL-PMEAGPALWG 524 (641)
Q Consensus 506 ~A~~~~~~~-~~~~~~~~~~ 524 (641)
+|++.|++. .+.|+..+|.
T Consensus 167 ~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHHHHHHhhhccCCCcHHHH
Confidence 555555554 3445544443
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=97.92 E-value=0.00036 Score=58.90 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=77.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh
Q 040576 493 CMVDLLGRAGLMRDSEELVSKL--PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKW 570 (641)
Q Consensus 493 ~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 570 (641)
...--+-..|++++|..+|+-+ -..-+..-|..|..+|...+++++|...|..+..++++||..+...+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444556899999999999876 22345667888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 040576 571 DEVENLRRIMK 581 (641)
Q Consensus 571 ~~A~~~~~~m~ 581 (641)
++|+..|+...
T Consensus 122 ~~A~~~f~~a~ 132 (165)
T PRK15331 122 AKARQCFELVN 132 (165)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 158
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=2.2e-05 Score=47.94 Aligned_cols=33 Identities=27% Similarity=0.587 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 040576 418 VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP 450 (641)
Q Consensus 418 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 450 (641)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.85 E-value=0.00037 Score=57.39 Aligned_cols=105 Identities=11% Similarity=0.050 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG----PALWGALL 527 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~ 527 (641)
++..+...+...|++++|.+.|..+.....-.+ ....+..+..++.+.|++++|...++++ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 444555666667777777777777765221111 1334555677777777777777777765 22222 34566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPRDPGPYV 558 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 558 (641)
.++...|+.++|...++.+++..|+++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777888888888888888888887765443
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.83 E-value=0.00027 Score=62.65 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 040576 489 EHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG----PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNI 563 (641)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 563 (641)
..+..+...+.+.|++++|...|++. ...|+ ...+..+...+...|++++|...++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666666777777777777665 11121 34677777788888888888888888888888888888888888
Q ss_pred HHhcCC--------------hHHHHHHHHHh
Q 040576 564 YASEGK--------------WDEVENLRRIM 580 (641)
Q Consensus 564 ~~~~g~--------------~~~A~~~~~~m 580 (641)
|...|+ +++|.+.+++.
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a 146 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQA 146 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHH
Confidence 887776 45566666655
No 161
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.83 E-value=0.0002 Score=68.42 Aligned_cols=129 Identities=9% Similarity=-0.046 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhH---HhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCCHH
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQ---RIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-------P-MEAGPA 521 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~~~~~ 521 (641)
.|..|.+.|.-.|+++.|+...+.-. +.+|-... ...+..+.+++.-.|+++.|.+.|+.. . ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 56677777777899999987765422 22443332 466788899999999999999998864 1 112344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 522 LWGALLSACSTHSNSELGKIVAQHLME----LE--PRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
...+|.++|.-..+++.|+.++.+=+. ++ ......+..|+++|...|..+.|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566788888888899999988876443 33 23456899999999999999999998887654
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.82 E-value=0.01 Score=57.28 Aligned_cols=142 Identities=13% Similarity=0.126 Sum_probs=73.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh-ccHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHH
Q 040576 424 IMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHA-GMVLEGWWYFDLMQRIYKIEPK----VEHYGCMVDLL 498 (641)
Q Consensus 424 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~ 498 (641)
+..|...|++..|-..+.++ ...|... |++++|++.|+++...+..... ...+..++..+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 44555555555554444433 3344444 6667777766666553211111 33455666777
Q ss_pred hhcCCHHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHH
Q 040576 499 GRAGLMRDSEELVSKLP---M-----EAGPA-LWGALLSACSTHSNSELGKIVAQHLMELEPRDPG-----PYVLLSNIY 564 (641)
Q Consensus 499 ~~~g~~~~A~~~~~~~~---~-----~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~ 564 (641)
.+.|++++|+++|++.. . +.+.. .+...+-++...||...|...+++....+|.-.. ....|+.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 78888888888877651 1 11111 2223333566678888888888888888775432 333444444
Q ss_pred Hhc--CChHHHHHHHHHh
Q 040576 565 ASE--GKWDEVENLRRIM 580 (641)
Q Consensus 565 ~~~--g~~~~A~~~~~~m 580 (641)
-.. ..+++|+.-++.+
T Consensus 246 ~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HTT-CCCHHHHCHHHTTS
T ss_pred HhCCHHHHHHHHHHHccc
Confidence 322 2444444444444
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.78 E-value=0.0011 Score=68.98 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 519 GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
++..+..+.......|++++|...++++++++| +...|..++.+|...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555556777777777777777776 356677777777777777777777777633
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0014 Score=61.00 Aligned_cols=102 Identities=12% Similarity=0.108 Sum_probs=85.2
Q ss_pred CCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCchHHH
Q 040576 485 EPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTH---SNSELGKIVAQHLMELEPRDPGPYVL 559 (641)
Q Consensus 485 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 559 (641)
+-|...|..|...|.+.|++..|...|.+. . ..+++..+..+..++... ....++..+++++++++|.|+.....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 345889999999999999999999999987 2 235566777777764432 35788999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCc
Q 040576 560 LSNIYASEGKWDEVENLRRIMKEKELE 586 (641)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~m~~~~~~ 586 (641)
|+..+...|++.+|...|+.|.+..+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999654433
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.72 E-value=0.0045 Score=59.81 Aligned_cols=97 Identities=9% Similarity=0.066 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhhccHHHHHHHHHHhHHh-hCCCCc--hH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPT-----PNDA-TFICVLSACTHAGMVLEGWWYFDLMQRI-YKIEPK--VE 489 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~ 489 (641)
.+..++..+.+.|++++|.++|++....-.. .+.. .|...+-++...|+...|.+.++..... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3445556666777777777777766553211 1111 2223333445566777777777666431 122222 33
Q ss_pred HHHHHHHHHhh--cCCHHHHHHHHHhCC
Q 040576 490 HYGCMVDLLGR--AGLMRDSEELVSKLP 515 (641)
Q Consensus 490 ~~~~li~~~~~--~g~~~~A~~~~~~~~ 515 (641)
....|+.++-. ...+++|+.-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 44455555543 235666666666664
No 166
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.70 E-value=0.063 Score=52.76 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=39.1
Q ss_pred HHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 040576 462 CTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGA 525 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 525 (641)
+...|++.++.-+-.-+.+ +.|++.+|..+.-++....++++|.+++.++| |+..++++
T Consensus 472 Lysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 3456777777665555544 66777777777777777777777777777776 55555543
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.69 E-value=0.0028 Score=66.13 Aligned_cols=139 Identities=11% Similarity=-0.009 Sum_probs=91.7
Q ss_pred CChhHHHHHHHHHHH--c---CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhh--------ccHHHHHHHHHHhHH
Q 040576 415 KNVVSWNSMIMGYGM--H---GQGEKALEMFMEMEKRGPTPND-ATFICVLSACTHA--------GMVLEGWWYFDLMQR 480 (641)
Q Consensus 415 ~~~~~~~~li~~~~~--~---~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~ 480 (641)
.|..+|...+.+... . +..+.|..+|++..+. .|+. ..+..+..++... +++..+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 344555555554322 2 2256777788887775 4543 3444333332221 223344444444333
Q ss_pred hhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 040576 481 IYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 481 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1123334567777777777789999999999987 56688888999999999999999999999999999999884
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.00082 Score=67.09 Aligned_cols=104 Identities=12% Similarity=0.053 Sum_probs=72.2
Q ss_pred HHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 040576 460 SACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNS 536 (641)
Q Consensus 460 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 536 (641)
..+...|++++|++.|+++.+ ..| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 344566777777777777766 233 3556666777777777777777777766 2334 355677777778888888
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 040576 537 ELGKIVAQHLMELEPRDPGPYVLLSNIYAS 566 (641)
Q Consensus 537 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 566 (641)
++|+..|+++++++|+++.....+..+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888888888888888887776666655333
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=6.2e-05 Score=44.70 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 040576 317 VSWNILLALYVRCKDYCECLRLFDRMIRGDA 347 (641)
Q Consensus 317 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 347 (641)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
No 170
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0003 Score=67.74 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeee
Q 040576 521 ALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFA 600 (641)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 600 (641)
.++..+..+|.+.+++..|+....++++++|+|..+++.-+.+|...|+++.|+..|+++
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka-------------------- 317 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKA-------------------- 317 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHH--------------------
Confidence 456678888999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCchhhHHHHHHHHHHHHHhhhc
Q 040576 601 SESIVENCPPHRKCIVYSMLGEIGAQMKMCRR 632 (641)
Q Consensus 601 ~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~ 632 (641)
++++|+|-+ +...|..+..+.++...
T Consensus 318 ----~k~~P~Nka--~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 318 ----LKLEPSNKA--ARAELIKLKQKIREYEE 343 (397)
T ss_pred ----HHhCCCcHH--HHHHHHHHHHHHHHHHH
Confidence 889999999 99999998888766543
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.65 E-value=0.00051 Score=60.68 Aligned_cols=93 Identities=10% Similarity=-0.050 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG----PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSN 562 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 562 (641)
...|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777788888888888776 22222 3467888888999999999999999999999998888888888
Q ss_pred HHH-------hcCChHHHHHHHHHh
Q 040576 563 IYA-------SEGKWDEVENLRRIM 580 (641)
Q Consensus 563 ~~~-------~~g~~~~A~~~~~~m 580 (641)
+|. +.|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666654
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.64 E-value=0.0014 Score=58.07 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHH
Q 040576 416 NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN--DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYG 492 (641)
Q Consensus 416 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 492 (641)
....+..+...+...|++++|...|++....+..+. ...+..+...+.+.|++++|...++++.. ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344567777778888888888888888876543332 34677777788888888888888888877 3343 55566
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 040576 493 CMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEG 568 (641)
Q Consensus 493 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 568 (641)
.+..+|...|+...+..-++.. ...+++|..+++++++.+|++ |..++..+...|
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 6677777777766655433321 123677888889999888887 444444444444
No 173
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.63 E-value=0.14 Score=54.83 Aligned_cols=159 Identities=8% Similarity=-0.026 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 040576 420 WNSMIMGYGMHGQGE---KALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVD 496 (641)
Q Consensus 420 ~~~li~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 496 (641)
-+.|+..+.+.++.. +|+-+++.-.... +-|..+-..+|..|+-.|-+..|.+.|+.+.- ..+..|..-|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HHhhhccchHH-HHH
Confidence 455666666666644 3333444433332 22344555566677777777777777776644 34444432221 223
Q ss_pred HHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhcCCh
Q 040576 497 LLGRAGLMRDSEELVSKLP--MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRD----PGPYVLLSNIYASEGKW 570 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 570 (641)
.+.-.|++..+...++... ..-+..---.++....+.|.+.+..+...-=.++.... ..+=......+...++.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 3444556666655555431 00011111112222234555555544433222222111 11223445567778888
Q ss_pred HHHHHHHHHhh
Q 040576 571 DEVENLRRIMK 581 (641)
Q Consensus 571 ~~A~~~~~~m~ 581 (641)
++-...+..|.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 88888888875
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=0.00027 Score=53.93 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=41.7
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHH
Q 040576 430 HGQGEKALEMFMEMEKRGPT-PNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSE 508 (641)
Q Consensus 430 ~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 508 (641)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+ .+. .+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 45666666666666664321 1233344456666666666666666665 22 111 12233334456666666666666
Q ss_pred HHHHh
Q 040576 509 ELVSK 513 (641)
Q Consensus 509 ~~~~~ 513 (641)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.59 E-value=0.00086 Score=56.43 Aligned_cols=90 Identities=7% Similarity=-0.150 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEee
Q 040576 518 AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPG 597 (641)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 597 (641)
.+....-.+..-+...|++++|+.+|+-+..++|.++..|..|+.++-..|++++|+..+.+.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A----------------- 95 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA----------------- 95 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------------
Confidence 344556667777899999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccCCCCchhhHHHHHHHHHHHHHhhhcc
Q 040576 598 EFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRRD 633 (641)
Q Consensus 598 ~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~ 633 (641)
..++|++.. .+-.++.-.-.+++...+
T Consensus 96 -------~~L~~ddp~--~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 96 -------AQIKIDAPQ--APWAAAECYLACDNVCYA 122 (157)
T ss_pred -------HhcCCCCch--HHHHHHHHHHHcCCHHHH
Confidence 677788887 777777766666655444
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=8.7e-05 Score=44.06 Aligned_cols=31 Identities=55% Similarity=0.783 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 040576 418 VSWNSMIMGYGMHGQGEKALEMFMEMEKRGP 448 (641)
Q Consensus 418 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 448 (641)
++|+.|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677788888888888888888888877663
No 177
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.58 E-value=0.0011 Score=51.60 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHh
Q 040576 420 WNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLG 499 (641)
Q Consensus 420 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 499 (641)
|..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.++.... . .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALE-L-DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcchhHHHHHHHHHH
Confidence 44455555556666666666665555321 1223444455555555555555555555544 1 1112234444444444
Q ss_pred hcCCHHHHHHHHHh
Q 040576 500 RAGLMRDSEELVSK 513 (641)
Q Consensus 500 ~~g~~~~A~~~~~~ 513 (641)
..|++++|...+++
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 55555555444443
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.0028 Score=60.93 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 040576 418 VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSA-CTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVD 496 (641)
Q Consensus 418 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 496 (641)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998543 2344555544444 33357777799999999884 4456778888999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 497 LLGRAGLMRDSEELVSKL-PMEAG----PALWGALLSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 22233 34899999999999999999999999999888754
No 179
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.52 E-value=0.13 Score=51.80 Aligned_cols=430 Identities=10% Similarity=0.084 Sum_probs=235.5
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHH
Q 040576 118 EPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNS 197 (641)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 197 (641)
+-|+.+|+.||+-+... .++++.+.|+ .|... .+-....|..-++.-.+..+++..+++|.+....- .+...|..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YE-q~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYE-QLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHH-HHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 45889999999988766 8999999999 45432 34456678889999999999999999999988764 35666666
Q ss_pred HHHHHHh-cCCHHHH----HHHHh----c--CCCCCeeHHHHHHHH---------HHhCCChHHHHHHHhhCCCCCchhH
Q 040576 198 LIHMYSV-CGEVLDA----RKVFE----D--GPVWDLVTWNSMIDG---------YVKNREVGFARELFDFMPERDIFTW 257 (641)
Q Consensus 198 li~~~~~-~g~~~~A----~~~~~----~--~~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~~~~~ 257 (641)
.++---+ .|+...+ .+.|+ + |...+-..|+..+.- |..+.+++...++|+++........
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 6653332 3333332 22222 1 334445557666543 4445566777778887733222211
Q ss_pred HHHHHHH---hc--------------CCChHHHHHHHhhcCCCCchHHHHHHHHHHhc-------CChHHHHHHHHhcCC
Q 040576 258 NSMISGY---VD--------------VGDMEAANGLFDLMPFRDVVSWNCMIDGYAKI-------GNVTSARNCFDRMCM 313 (641)
Q Consensus 258 ~~ll~~~---~~--------------~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-------~~~~~A~~~~~~~~~ 313 (641)
.-+=+-| -+ ...+-.|.+++++.. .+..++.+. |--++..++
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~--------~lt~GL~r~~~~vp~~~T~~e~~qv------ 237 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQ--------NLTRGLNRNAPAVPPKGTKDEIQQV------ 237 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH--------HHHhhhcccCCCCCCCCChHHHHHH------
Confidence 1111111 00 111222222222211 111111111 000110000
Q ss_pred CCcchHHHHHHHHHHcCC--------hHHHHHHHHHHH-HCCCCCCHHH-HHHH----HHHHHccCC-------HHHHHH
Q 040576 314 RNVVSWNILLALYVRCKD--------YCECLRLFDRMI-RGDAKPNEAS-LMSV----LTACANMGV-------IDIGQW 372 (641)
Q Consensus 314 ~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~-~~g~~p~~~~-~~~l----l~~~~~~g~-------~~~a~~ 372 (641)
..|-.+|.-=-.++- -....-.+++.. --+..|+.-- +... -..+...|+ .+++..
T Consensus 238 ---~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 238 ---ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred ---HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 012112211000000 000111111111 1122222110 0000 011222222 345555
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 373 IHSYIQKCRIKPDVLLSTSLLTMYAKCG---VMDLARNVFDNMTE----KNVVSWNSMIMGYGMHGQGEKALEMFMEMEK 445 (641)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 445 (641)
+++..+..-..-+..+|..+.+---..- ..+.....+++... .-..+|...+..-.+..-...|..+|.+..+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 6655554333334444444433221111 24455555555542 2335677788888888888999999999999
Q ss_pred CCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCC--
Q 040576 446 RGPTP-NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLP---MEAG-- 519 (641)
Q Consensus 446 ~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~-- 519 (641)
.+..+ +...+++++.-++. ++..-|.++|+.-.+++|-. ...-...++-+...|+-..|..+|++.. ..|+
T Consensus 395 ~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred ccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 88777 44566777777664 88899999999888745433 3444567888889999999999999872 2333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHhcCChHH
Q 040576 520 PALWGALLSACSTHSNSELGKIVAQHLMELEPRDP----GPYVLLSNIYASEGKWDE 572 (641)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~ 572 (641)
..+|..++.--..-|+...+..+-++.....|.+. ..-..+.+-|.-.+.+..
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 46899999999999999999998888776555221 123334445554554443
No 180
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.17 Score=53.06 Aligned_cols=322 Identities=12% Similarity=0.074 Sum_probs=180.1
Q ss_pred HHHHHHHhCCChHHHHHHHhhCCCCC---chhHHHHHHHHhcC---CChHHHHHHHhhcCC--CCchHHHHHHHHHHhcC
Q 040576 228 SMIDGYVKNREVGFARELFDFMPERD---IFTWNSMISGYVDV---GDMEAANGLFDLMPF--RDVVSWNCMIDGYAKIG 299 (641)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~ 299 (641)
.+|+-++..+.+..|+++-+.+..|- ...|.....-+.+. .+-+.+..+-+++.. .....|..+..-...+|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 45666777788888888888875554 44455555555444 223334444444443 34566777777777788
Q ss_pred ChHHHHHHHHhcCCC--------CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 040576 300 NVTSARNCFDRMCMR--------NVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQ 371 (641)
Q Consensus 300 ~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 371 (641)
+.+-|..+++.=+.. +..-+...+.-....|+.+-...++-.+.+. .+...|... ..+...|.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~p~a~ 592 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQPLAL 592 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhchhhh
Confidence 888888877754221 1122334444555556666555555554432 111111111 11223334
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh-c------CCCChhHHHHHHHHHHHcCC----------hH
Q 040576 372 WIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDN-M------TEKNVVSWNSMIMGYGMHGQ----------GE 434 (641)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~------~~~~~~~~~~li~~~~~~~~----------~~ 434 (641)
.+|.+..+..-.- .+-+.|- .++...+...|.. - .+.-.........++.+... ..
T Consensus 593 ~lY~~~~r~~~~~------~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 593 SLYRQFMRHQDRA------TLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HHHHHHHHhhchh------hhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 4444333311000 0111121 1222122211110 0 01111122223333333322 11
Q ss_pred HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHh
Q 040576 435 KALEMFMEMEK-RGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSK 513 (641)
Q Consensus 435 ~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 513 (641)
+-+.+.+.+.. .|......+.+-.+.-+...|+-.+|.++-++.+- ||-..|..-+.+++..+++++-+++-+.
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 22223333333 23344445666677777888999999888766643 8888888889999999999998888777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 514 LPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 514 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
.. .+..|.-...+|.+.|+.++|..++-+.-. +.....+|.+.|++.+|.++--+-+
T Consensus 741 kk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 741 KK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred cC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHhc
Confidence 64 255677788999999999999888755322 2368889999999999988765543
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.51 E-value=0.0011 Score=62.46 Aligned_cols=91 Identities=10% Similarity=0.094 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHH
Q 040576 490 HYGCMVDLLGRAGLMRDSEELVSKL-PMEAG----PALWGALLSACSTHSNSELGKIVAQHLMELEPRDP---GPYVLLS 561 (641)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 561 (641)
.|...+..+.+.|++++|+..|+.+ ...|+ +..+.-+..+|...|++++|...|+.+++..|+++ ..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445567777777777766 22233 23555677777888888888888888887777654 4555667
Q ss_pred HHHHhcCChHHHHHHHHHh
Q 040576 562 NIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~m 580 (641)
.+|...|++++|..++++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 7788888888888888887
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.50 E-value=0.00042 Score=49.79 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=47.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 494 MVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 494 li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
+...+.+.|++++|++.|+++ ...|+ ...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778888888998888887 34454 55778888888899999999999999999988874
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.49 E-value=0.019 Score=49.22 Aligned_cols=131 Identities=8% Similarity=0.008 Sum_probs=98.5
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCCHHHH
Q 040576 448 PTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P---MEAGPALW 523 (641)
Q Consensus 448 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~~~~~~~ 523 (641)
..|+...-..|..++.+.|+..+|...|++... .-+.-|......+.++....+++.+|...++++ . ...++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 466777777788889999999999999998887 345566777888888888899999999888876 2 11122334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 524 GALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 524 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
..+...+...|.++.|+..|+.++..-|+ +..-...+..+.++|+.++|..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 45667788899999999999999988776 345555677788899888776655444
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.49 E-value=0.12 Score=50.47 Aligned_cols=111 Identities=13% Similarity=0.122 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTH 533 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 533 (641)
+.+..+.-|...|....|.++-.+ +.+ |+...|...+.+|+..|+|++-..+-.. +..+..|..++.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 455566777788888777666544 344 8889999999999999999988876554 34567788999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 534 SNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 534 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
|+..+|..+..+ ..+..-+..|.+.|+|.+|.+.--+..
T Consensus 251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999988876 123668889999999999988766553
No 185
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.48 E-value=0.13 Score=50.74 Aligned_cols=428 Identities=10% Similarity=0.023 Sum_probs=207.8
Q ss_pred HcCCCchhHHHHHHHHHHhcCCCCCcch------HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHH--H
Q 040576 132 LMLNDPFGALSFYYEKMMAKFVEHNHYT------FPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMY--S 203 (641)
Q Consensus 132 ~~~g~~~~A~~~~~~~m~~~~~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~--~ 203 (641)
-+.+++.+|..+|. +.... ...+.+. -+.+++++. .++.+.....+....+.- | ...|-.|..++ -
T Consensus 17 qkq~~~~esEkifs-kI~~e-~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 17 QKQKKFQESEKIFS-KIYDE-KESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHhhhhHHHHHHH-HHHHH-hhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 35678888888888 55443 2222222 334556655 345666666666665532 2 33444555443 3
Q ss_pred hcCCHHHHHHHHhc----CC---CC-----------CeeHHHHHHHHHHhCCChHHHHHHHhhCC--------CCCchhH
Q 040576 204 VCGEVLDARKVFED----GP---VW-----------DLVTWNSMIDGYVKNREVGFARELFDFMP--------ERDIFTW 257 (641)
Q Consensus 204 ~~g~~~~A~~~~~~----~~---~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~~~ 257 (641)
+.+++.+|.+.+.. .. .+ |-..=+..+.++...|++.++..++++|+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 67888888877742 11 10 11122445677788888888888888872 2467777
Q ss_pred HHHHHHHhcCCChHHHHHHHhhcCCCC-chHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHc--CChHH
Q 040576 258 NSMISGYVDVGDMEAANGLFDLMPFRD-VVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRC--KDYCE 334 (641)
Q Consensus 258 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~ 334 (641)
+.++-.+++.=-++.- +. ...| ..-|--++-.|.+.=+.-++. -+++.. |.......++....-. .+..-
T Consensus 171 d~~vlmlsrSYfLEl~----e~-~s~dl~pdyYemilfY~kki~~~d~~-~Y~k~~-peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELK----ES-MSSDLYPDYYEMILFYLKKIHAFDQR-PYEKFI-PEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHHHHHhHHHHHHHH----Hh-cccccChHHHHHHHHHHHHHHHHhhc-hHHhhC-cHHHHHHHHHHHHHhCCHhhccH
Confidence 7755554432111110 00 0111 112222222332211100000 000000 0011111111111111 11111
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC----chhHHHHHHHHHHhcCCHHHHHHHH
Q 040576 335 CLRLFDRMIRGDAKPNEA-SLMSVLTACANMGVIDIGQWIHSYIQKCRIKP----DVLLSTSLLTMYAKCGVMDLARNVF 409 (641)
Q Consensus 335 A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 409 (641)
-+++++.-...-+.|+.. ....+...+.. +.+++..+-+.+....+.+ -+.++..++....+.++...|...+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 222233333333444433 22223333322 3444444443333322111 1334455555555666666666665
Q ss_pred hhcC--CCChhH-------HHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH---HHHhhcc-HHHH
Q 040576 410 DNMT--EKNVVS-------WNSMIMGYG----MHGQGEKALEMFMEMEKRGPTPNDA-TFICVLS---ACTHAGM-VLEG 471 (641)
Q Consensus 410 ~~~~--~~~~~~-------~~~li~~~~----~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~---~~~~~g~-~~~a 471 (641)
.-+. +|+... -..+-+..+ ..-+...-+.+|+.....++ |.. -...++. -+.+.|. -+.|
T Consensus 322 ~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 322 ALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHH
Confidence 5443 222211 011111122 11123334566666665533 322 2222332 3455565 7788
Q ss_pred HHHHHHhHHhhCCCCc-hHHHHHHH----HHHhhc---CCHH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcC
Q 040576 472 WWYFDLMQRIYKIEPK-VEHYGCMV----DLLGRA---GLMR---DSEELVSKLPMEA----GPALWGALLSA--CSTHS 534 (641)
Q Consensus 472 ~~~~~~~~~~~~~~p~-~~~~~~li----~~~~~~---g~~~---~A~~~~~~~~~~~----~~~~~~~l~~~--~~~~g 534 (641)
+++++.+.+ +.+. ...-+.+. ..|..+ ..+. +-...+++.+..| +...-+.|..| +..+|
T Consensus 400 lnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 400 LNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 888888877 3333 32222211 222211 1122 2233344443322 34456667666 57899
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 535 NSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 535 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
++.++...-.-+.+..| ++.+|..+|-++....+++||.+++..+
T Consensus 477 ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99999999888999999 7899999999999999999999999887
No 186
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.47 E-value=7.9e-05 Score=45.07 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHH
Q 040576 542 VAQHLMELEPRDPGPYVLLSNIYASEGKWDEVEN 575 (641)
Q Consensus 542 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 575 (641)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 187
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.19 Score=52.12 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=62.2
Q ss_pred CCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-----eeHHHHHHHHHHhCCChHHHHH
Q 040576 170 IRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWD-----LVTWNSMIDGYVKNREVGFARE 244 (641)
Q Consensus 170 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~ 244 (641)
-|.+++|++++-+|-+.. .-|.++.+.|||-...+++..+...+ ..+|+.+...++....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777665554432 34566667777777777776543221 2346666666666666666666
Q ss_pred HHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhc
Q 040576 245 LFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRM 311 (641)
Q Consensus 245 ~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 311 (641)
.|..-. --...+.++.+..++++-+.+-..+.+ +....-.+.+++...|.-++|.+.|-+.
T Consensus 818 yY~~~~-----~~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 818 YYSYCG-----DTENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHhcc-----chHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 555431 011122333333333333222222221 2233344445555555555555554443
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.35 E-value=0.0058 Score=53.89 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 418 VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN--DATFICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 418 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
..|..++..+...|++++|+..|++.......|. ..++..+...+...|++++|+..++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555556666666666666554322221 12455555555566666666666655554
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.042 Score=49.85 Aligned_cols=230 Identities=13% Similarity=0.063 Sum_probs=142.3
Q ss_pred eHHHHHHHHHHhCCChHHHHHHHhhC---CCCCchhHHHHHHHH-hcCC-ChHHHHHH-HhhcCCCCchHHHHHHHHHHh
Q 040576 224 VTWNSMIDGYVKNREVGFARELFDFM---PERDIFTWNSMISGY-VDVG-DMEAANGL-FDLMPFRDVVSWNCMIDGYAK 297 (641)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~ll~~~-~~~g-~~~~a~~~-~~~~~~~~~~~~~~li~~~~~ 297 (641)
..|+.-+..+++.+..++|..-+... ..||.. |...=..| .+.| .+.-+.++ +.++.+.-...++.|...+.-
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34777778888888888887655544 333211 00000000 0111 11112221 222222223344555555554
Q ss_pred cCChHHHHHHHHhcCC----------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 040576 298 IGNVTSARNCFDRMCM----------RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVI 367 (641)
Q Consensus 298 ~~~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 367 (641)
...+++-+..++.-.. +-....+.++..+.-.|.+.-.+.++++.++...+.++.....++..-.+.|+.
T Consensus 149 ~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~ 228 (366)
T KOG2796|consen 149 KTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI 228 (366)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence 4445554554444322 122345667788888899999999999999977677888888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHH-----HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 040576 368 DIGQWIHSYIQKCRIKPDVLLST-----SLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEM 439 (641)
Q Consensus 368 ~~a~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~ 439 (641)
+.|..+|+...+..-..+....+ .....|.-.+++..|...|.++.. .|+..-|.-.-+..-.|+..+|++.
T Consensus 229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence 99999999887654333333333 334456667889999999988875 4555566655556667899999999
Q ss_pred HHHHHHCCCCCCHHHHH
Q 040576 440 FMEMEKRGPTPNDATFI 456 (641)
Q Consensus 440 ~~~m~~~g~~p~~~~~~ 456 (641)
++.|.+. .|.+.+-+
T Consensus 309 ~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 309 LEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHhcc--CCccchhh
Confidence 9999986 44444333
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.29 E-value=0.0026 Score=61.01 Aligned_cols=130 Identities=7% Similarity=-0.024 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH----HHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHhHHh---hC-CCCchH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFME----MEKRGPTP-NDATFICVLSACTHAGMVLEGWWYFDLMQRI---YK-IEPKVE 489 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~----m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~-~~p~~~ 489 (641)
+|..|...|.-.|+++.|+..-+. .++-|-+. ....+..+.+++.-.|+++.|.+.|+..... .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555556666777777654332 12223111 1235666777777777777777777654320 11 122244
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 490 HYGCMVDLLGRAGLMRDSEELVSKL-------P-MEAGPALWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
...+|.+.|.-..++++|++++.+- . .-.....+.+|..++...|..++|..+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556777777777777777776543 1 123345666777777777887777777666544
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.27 E-value=0.0052 Score=47.98 Aligned_cols=79 Identities=16% Similarity=0.078 Sum_probs=66.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCCchhHHH
Q 040576 320 NILLALYVRCKDYCECLRLFDRMIRGDA-KPNEASLMSVLTACANMG--------VIDIGQWIHSYIQKCRIKPDVLLST 390 (641)
Q Consensus 320 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 390 (641)
...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. ++-....+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 999999999999877654 2345677889999999999999999
Q ss_pred HHHHHHHh
Q 040576 391 SLLTMYAK 398 (641)
Q Consensus 391 ~li~~~~~ 398 (641)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887765
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.27 E-value=0.0056 Score=47.81 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhhc--------cHHHHHHHHHHhHHhhCCCCchHH
Q 040576 420 WNSMIMGYGMHGQGEKALEMFMEMEKRGP-TPNDATFICVLSACTHAG--------MVLEGWWYFDLMQRIYKIEPKVEH 490 (641)
Q Consensus 420 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~ 490 (641)
-...|..+...+++.....+|+.+...|+ .|+..+|+.++.+..+.. ++.+.+.+|+.|.. .+++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHH
Confidence 34456666777999999999999999999 899999999999876542 45677888999988 789999999
Q ss_pred HHHHHHHHhh
Q 040576 491 YGCMVDLLGR 500 (641)
Q Consensus 491 ~~~li~~~~~ 500 (641)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.24 E-value=0.11 Score=48.60 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=34.6
Q ss_pred HHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 040576 457 CVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSK 513 (641)
Q Consensus 457 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 513 (641)
.+..-|.+.|.+..|..-++.+.+.+.-.|. .+....++.+|...|..++|.++...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445566667777777777777664433332 44555666777777777777665544
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.22 E-value=0.00043 Score=50.28 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=34.7
Q ss_pred hhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 040576 464 HAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPALWGA 525 (641)
Q Consensus 464 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 525 (641)
..|++++|+++|+.+... .+-+...+..++.+|.+.|++++|.++++++ ...|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 456677777777776651 2224555556666677777777777776666 33455444433
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.19 E-value=0.0042 Score=50.46 Aligned_cols=86 Identities=13% Similarity=0.006 Sum_probs=51.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC---CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 040576 495 VDLLGRAGLMRDSEELVSKL---PME-AG-PALWGALLSACSTHSNSELGKIVAQHLMELEPR---DPGPYVLLSNIYAS 566 (641)
Q Consensus 495 i~~~~~~g~~~~A~~~~~~~---~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 566 (641)
..++-..|+.++|+.+|++. ... ++ ...+..+..++...|++++|..++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 44555566666666666654 111 11 224445666677777777777777777766666 44555556666777
Q ss_pred cCChHHHHHHHHHh
Q 040576 567 EGKWDEVENLRRIM 580 (641)
Q Consensus 567 ~g~~~~A~~~~~~m 580 (641)
.|+.++|++.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 77777777766543
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.19 E-value=0.0011 Score=48.35 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHS-NSELGKIVAQHLMELEP 551 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 551 (641)
...|..+...+...|++++|+..|++. ...|+ ...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666777777777777777777765 23343 456777777777777 68888888888887776
No 197
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.19 E-value=0.0017 Score=64.29 Aligned_cols=65 Identities=11% Similarity=-0.049 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 519 GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGP---YVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
+...|+.+..+|...|++++|+..|+++++++|++... |+.++.+|...|+.++|+..++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35577777778888888888888888888888887744 788888888888888888888887664
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.15 E-value=0.14 Score=48.02 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=36.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040576 493 CMVDLLGRAGLMRDSEELVSKL----PMEAG-PALWGALLSACSTHSNSELGKIVAQHL 546 (641)
Q Consensus 493 ~li~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 546 (641)
.+.+.|.+.|.+..|+.-++.+ |..|. ......+..+|...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4566778888887777666665 33333 345666777888888888888776554
No 199
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.13 Score=50.04 Aligned_cols=262 Identities=10% Similarity=-0.085 Sum_probs=136.3
Q ss_pred HHHHHHhcCCHHHHHHHHhc---CCCCCeeHHHHHHHHHHhCCChHHHHHHHhhC---CCCCchhHHHHHHHHhcCCChH
Q 040576 198 LIHMYSVCGEVLDARKVFED---GPVWDLVTWNSMIDGYVKNREVGFARELFDFM---PERDIFTWNSMISGYVDVGDME 271 (641)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~g~~~ 271 (641)
.-..+.+..++..|++.+.. +.+.+..-|..-...+...|++++|+--.+.- ...........-+++...++..
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 34555666777777777754 45556666666666677777777776655444 2222334445555666666666
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCcchHHHH-HHHHHHcCChHHHHHHHHHHHHC
Q 040576 272 AANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCM-----RNVVSWNIL-LALYVRCKDYCECLRLFDRMIRG 345 (641)
Q Consensus 272 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~ 345 (641)
+|.+.++ +...+ ....|...++.... |.-..|-.+ ..++.-.|++++|...--...+.
T Consensus 135 ~A~~~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 135 EAEEKLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred HHHHHhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence 6666555 11111 11222333333322 111223222 24566778888887776666553
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhH-------------HHHHHHHHHhcCCHHHHHHHHhhc
Q 040576 346 DAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLL-------------STSLLTMYAKCGVMDLARNVFDNM 412 (641)
Q Consensus 346 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~A~~~~~~~ 412 (641)
. ..+......--.++...++.+.+...|++.+..+ |+-.. +..-.+-..+.|++..|.+.|.+.
T Consensus 199 d-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 199 D-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred c-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 2 1111112111223445667788888887777654 32111 111123344566667777766665
Q ss_pred CC-------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 413 TE-------KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPND-ATFICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 413 ~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
.. ++...|........+.|+.++|+.--++.... .|.- ..|..-..++...++|++|.+-|+...+
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 23345555555666666777666666655542 2111 1222223344555666666666666655
No 200
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.11 E-value=0.007 Score=58.23 Aligned_cols=130 Identities=8% Similarity=0.071 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 040576 453 ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR-AGLMRDSEELVSKL--PMEAGPALWGALLSA 529 (641)
Q Consensus 453 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 529 (641)
.+|..++..+.+.+..+.|..+|.++.+... .+..+|...+..-.+ .++.+.|..+|+.. ....+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4677888899999999999999999986222 234555555555334 56677799999987 244667789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040576 530 CSTHSNSELGKIVAQHLMELEPRDP---GPYVLLSNIYASEGKWDEVENLRRIMKEKE 584 (641)
Q Consensus 530 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 584 (641)
+...++.+.|..+|++++..-|.+. ..|...+..=.+.|+++.+.++.+++.+.-
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998766544 478888888889999999999999987653
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.07 E-value=0.32 Score=47.00 Aligned_cols=273 Identities=17% Similarity=0.171 Sum_probs=173.9
Q ss_pred cCChHHHHHHHHhc---CCCCcchHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHH
Q 040576 298 IGNVTSARNCFDRM---CMRNVVSWNILLA--LYVRCKDYCECLRLFDRMIRGDAKPNEA--SLMSVLTACANMGVIDIG 370 (641)
Q Consensus 298 ~~~~~~A~~~~~~~---~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a 370 (641)
.|+-..|.+.-.+. ...|....-.++. +-.-.|++++|.+-|+.|... |... .+..|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 34555555554443 2234333333333 234468888888888888762 3322 233444445677888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCChh--HHHHHHHHHH---HcCChHHHHHHH
Q 040576 371 QWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMT-----EKNVV--SWNSMIMGYG---MHGQGEKALEMF 440 (641)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~~~~~~A~~~~ 440 (641)
..+-+..-..- +.-.....+.+...|..|+|+.|+++.+.-. ++++. .--.|+.+-. -.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877766543 2335677788888899999999999988654 24432 1112222211 123455566555
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHH--H--HHHHhCC
Q 040576 441 MEMEKRGPTPNDA-TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDS--E--ELVSKLP 515 (641)
Q Consensus 441 ~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~--~~~~~~~ 515 (641)
.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+ ..|.+..+..++ +.+.|+.... . +-++.|.
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC
Confidence 55444 466654 233445678899999999999999976 556665554333 4566653221 1 1233443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CChHHHHHHHHHhhhC
Q 040576 516 MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASE-GKWDEVENLRRIMKEK 583 (641)
Q Consensus 516 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 583 (641)
..+......+..+-...|++..|..-.+.+....|.. ..|..|+++-... |+-.++.+++-+....
T Consensus 326 -~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 -PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2345567778888889999999999999999999885 4888888886655 9999999999888654
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.06 E-value=0.018 Score=46.77 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=62.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHh
Q 040576 423 MIMGYGMHGQGEKALEMFMEMEKRGPTPN--DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLG 499 (641)
Q Consensus 423 li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 499 (641)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567778888888888888888876654 23566677788888888888888888876321101 1222233445677
Q ss_pred hcCCHHHHHHHHHh
Q 040576 500 RAGLMRDSEELVSK 513 (641)
Q Consensus 500 ~~g~~~~A~~~~~~ 513 (641)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877654
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.02 E-value=0.41 Score=47.23 Aligned_cols=430 Identities=12% Similarity=0.072 Sum_probs=229.6
Q ss_pred CCCCChhHHHHHHHHHhhcCCChHHHHHhhhcCCCCCc---ccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchH
Q 040576 84 GLSQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQEPDA---FMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTF 160 (641)
Q Consensus 84 g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~ 160 (641)
.-+.|...+-.|+. .+...|..++.++++++|..|-+ ..|.--|++=....++.....+|. ......+ +...|
T Consensus 37 dNPtnI~S~fqLiq-~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~-rCL~k~l--~ldLW 112 (660)
T COG5107 37 DNPTNILSYFQLIQ-YLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFG-RCLKKSL--NLDLW 112 (660)
T ss_pred cCchhHHHHHHHHH-HHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHH-HHHhhhc--cHhHH
Confidence 34678889999999 78999999999999999976654 478888887777888888888888 5555433 45566
Q ss_pred HHHHHHHhcCCCchh------HHHHHHHHHH-hCCCCChh-HHHHHHHHHH---hcCCHH------HHHHHHhcCCC-C-
Q 040576 161 PLLGKVCAGIRSLRE------GKKVHARIVK-CGFELDLF-VRNSLIHMYS---VCGEVL------DARKVFEDGPV-W- 221 (641)
Q Consensus 161 ~~ll~~~~~~~~~~~------a~~~~~~~~~-~g~~~~~~-~~~~li~~~~---~~g~~~------~A~~~~~~~~~-~- 221 (641)
..-+.-..+.+..-. -.+.++.... .|++|-.. .|+..+..+- ..|.|+ ...+.+.++.. |
T Consensus 113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~ 192 (660)
T COG5107 113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPM 192 (660)
T ss_pred HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcc
Confidence 666665555443222 2234444443 45555433 4555444332 234444 44444544321 1
Q ss_pred -Ce-eHHH------HHHHH-----HHhC--CChHHHHHHHhhC-------CC---CCchhHHH-----------HHHHHh
Q 040576 222 -DL-VTWN------SMIDG-----YVKN--REVGFARELFDFM-------PE---RDIFTWNS-----------MISGYV 265 (641)
Q Consensus 222 -~~-~~~~------~li~~-----~~~~--g~~~~A~~~~~~m-------~~---~~~~~~~~-----------ll~~~~ 265 (641)
+. ..|+ .=++- ++-. --+-.|.+.+++. .. .+..+++- .|..-.
T Consensus 193 ~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~ 272 (660)
T COG5107 193 GNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEM 272 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhh
Confidence 11 1121 11111 1000 0122344444443 00 11122221 221111
Q ss_pred cCC-----C-h-HHHHHHHhhcCC---CCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHH
Q 040576 266 DVG-----D-M-EAANGLFDLMPF---RDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCEC 335 (641)
Q Consensus 266 ~~g-----~-~-~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 335 (641)
..| + . ...--+|++... -...+|----..+...++-+.|....++-.+-.+..--.+...|.-..+-++.
T Consensus 273 en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v 352 (660)
T COG5107 273 ENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAV 352 (660)
T ss_pred cCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHH
Confidence 110 0 0 001111222111 01233333344556678888888887776443222222234445555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 040576 336 LRLFDRMIRGDAKPNEASLMSVLTACA---NMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNM 412 (641)
Q Consensus 336 ~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 412 (641)
...|++..+.= ..-| ..+.+=+ ..|+++.-.+++-.-+ ..-..+|..+++.-.+..-++.|..+|-++
T Consensus 353 ~~~fdk~~q~L----~r~y-s~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 353 YGCFDKCTQDL----KRKY-SMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hhhHHHHHHHH----HHHH-hhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555543210 0000 0011101 1233322222211111 123556777888878888888899999887
Q ss_pred CC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhhccHHHHHHHHHHhHHhhCCCC
Q 040576 413 TE-----KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATF-ICVLSACTHAGMVLEGWWYFDLMQRIYKIEP 486 (641)
Q Consensus 413 ~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 486 (641)
.+ +++..+++++.-++ .|+...|..+|+--... -||...| .-.+.-+...++-+.|..+|+.... .+..
T Consensus 424 rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~--r~~~ 498 (660)
T COG5107 424 RKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVE--RLEK 498 (660)
T ss_pred hccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH--HHHH
Confidence 64 57778888888776 47778888888865543 3444433 3455666778888899999986654 2333
Q ss_pred c--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 040576 487 K--VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPALWGALLSACS 531 (641)
Q Consensus 487 ~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~ 531 (641)
+ ...|..+|+-=..-|++..+..+=+.+ ..-|...+.....+.|.
T Consensus 499 ~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 499 TQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 3 567888888888888888887766655 22345444444444443
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.01 E-value=0.01 Score=52.57 Aligned_cols=96 Identities=8% Similarity=0.092 Sum_probs=70.5
Q ss_pred HHHHHhc--CCCCcchHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------------
Q 040576 305 RNCFDRM--CMRNVVSWNILLALYVRC-----KDYCECLRLFDRMIRGDAKPNEASLMSVLTACANM------------- 364 (641)
Q Consensus 305 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 364 (641)
...|+.. ...+-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 445666777777776543 66777777888888889999999999988876542
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 040576 365 ---GVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCG 400 (641)
Q Consensus 365 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 400 (641)
.+-+-|..++++|...|+-||..++..+++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 244677888888888888888888888888885544
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.00 E-value=0.11 Score=51.22 Aligned_cols=160 Identities=17% Similarity=0.116 Sum_probs=95.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040576 391 SLLTMYAKCGVMDLARNVFDNMTEK-------NVVSWNSMIMGYGM---HGQGEKALEMFMEMEKRGPTPNDATFICVLS 460 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 460 (641)
.++-.|-...+++...++.+.+... ....-....-++.+ .|+.++|++++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566777777777777777642 11111223344555 7788888888888665555667777777666
Q ss_pred HHHh---------hccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCC-H---HHHHHHH---HhC-------CCC
Q 040576 461 ACTH---------AGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGL-M---RDSEELV---SKL-------PME 517 (641)
Q Consensus 461 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~---~~A~~~~---~~~-------~~~ 517 (641)
.|-. ....++|+..|.+.-+ +.|+...--.++-.+...|. . .+..++- ... ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 2246777777776643 55553322223333333332 1 1222222 111 122
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 518 AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
.+.-.+.+++.++.-.|++++|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 445556789999999999999999999999987664
No 206
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.98 E-value=0.017 Score=57.88 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 040576 318 SWNILLALYVRCKDYCECLRLFDRMIRG--DAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTM 395 (641)
Q Consensus 318 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 395 (641)
....+++.+....+.+++..++-+.+.. ....-..|..+++..|...|..+.+..++..=...|+-||..+++.|++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3444444444445555555555555443 12122233345555555555555555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHhhcC
Q 040576 396 YAKCGVMDLARNVFDNMT 413 (641)
Q Consensus 396 ~~~~g~~~~A~~~~~~~~ 413 (641)
+.+.|++..|.++...|.
T Consensus 148 fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HhhcccHHHHHHHHHHHH
Confidence 555555555555555443
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.98 E-value=0.16 Score=43.67 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=56.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHH
Q 040576 384 PDVLLSTSLLTMYAKCGVMDLARNVFDNMTE----KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRG---PTPNDATFI 456 (641)
Q Consensus 384 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p~~~~~~ 456 (641)
|++..--.|...+...|+..+|...|++... .|......+..+....+++..|...++++.+.. -.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 4444444445555555555555555554442 344444444555555555555555555554431 1222 222
Q ss_pred HHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHH
Q 040576 457 CVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSE 508 (641)
Q Consensus 457 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 508 (641)
.+...+...|.+.+|...|+.... .-|+...-......+.++|+.++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 344455555555555555555554 2233333333344445555444443
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.65 Score=48.94 Aligned_cols=96 Identities=13% Similarity=0.015 Sum_probs=51.2
Q ss_pred hCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHhcCCCCC---eeHHHHHHHHHHhCCC---hHHHHHHHhhCCC--C
Q 040576 186 CGFELDLFVRN-----SLIHMYSVCGEVLDARKVFEDGPVWD---LVTWNSMIDGYVKNRE---VGFARELFDFMPE--R 252 (641)
Q Consensus 186 ~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--~ 252 (641)
-|++.+..-|. .+|+-+...+.+..|.++-.-+..|. ...|.....-+.+..+ -+.+..+-+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 45555555443 34555566667777776665544333 3445555555555422 1222223333322 4
Q ss_pred CchhHHHHHHHHhcCCChHHHHHHHhhcC
Q 040576 253 DIFTWNSMISGYVDVGDMEAANGLFDLMP 281 (641)
Q Consensus 253 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 281 (641)
+..+|..+..-....|+.+.|..+++.-.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~ 534 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEP 534 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCC
Confidence 45667777766667777777777766544
No 209
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.97 E-value=0.01 Score=52.62 Aligned_cols=97 Identities=12% Similarity=0.201 Sum_probs=76.4
Q ss_pred HHHHhhc--CCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh-------------
Q 040576 406 RNVFDNM--TEKNVVSWNSMIMGYGMH-----GQGEKALEMFMEMEKRGPTPNDATFICVLSACTHA------------- 465 (641)
Q Consensus 406 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 465 (641)
...|+.. ..++-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 356777788888877654 66777778888999999999999999999987652
Q ss_pred ---ccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCC
Q 040576 466 ---GMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGL 503 (641)
Q Consensus 466 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 503 (641)
.+-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 134678899999998 8999999999999999887775
No 210
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.97 E-value=0.011 Score=59.18 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=61.3
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhH
Q 040576 346 DAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCR--IKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE----KNVVS 419 (641)
Q Consensus 346 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 419 (641)
+.+.+...+..++..+....+++.+..++-...... ...-..+..+++..|.+.|..+.++.++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344555566666666666666666666655555431 111122333555555555555555555544332 55555
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040576 420 WNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACT 463 (641)
Q Consensus 420 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 463 (641)
+|.|+..+.+.|++..|.++...|..++.-.+..|+...+.+|.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 55555555555555555555555555444444444444444443
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.97 E-value=0.0013 Score=42.71 Aligned_cols=42 Identities=24% Similarity=0.423 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 040576 521 ALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSN 562 (641)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 562 (641)
..|..+...|...|++++|+.+++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457788899999999999999999999999999988888764
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.93 E-value=0.0015 Score=42.44 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=38.2
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHH
Q 040576 554 PGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGE 622 (641)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~ 622 (641)
|..+..++.+|.+.|++++|.++++++ .+.+|++.+ +...|++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~------------------------l~~~P~~~~--a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRA------------------------LALDPDDPE--AWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------HHHCcCCHH--HHHHhhh
Confidence 357889999999999999999999999 788899999 8877765
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.88 E-value=0.19 Score=45.79 Aligned_cols=177 Identities=12% Similarity=0.083 Sum_probs=78.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 040576 322 LLALYVRCKDYCECLRLFDRMIRGDA--KPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKC 399 (641)
Q Consensus 322 li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 399 (641)
....+...|++++|.+.|+++...-. +--....-.+..++.+.|+++.|...++..++........-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34455667777777777777765311 1112334455666677777777777777666543111111122122222111
Q ss_pred CCHHHHHHHHhhcCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 040576 400 GVMDLARNVFDNMTEKNV-------VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGW 472 (641)
Q Consensus 400 g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 472 (641)
....... ....|. ..+..++.-|-......+|...+..+.+. .- ..-..+..-|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHHHHH
Confidence 1111110 011111 12334444444444555554444444321 00 01112455566677777777
Q ss_pred HHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHH
Q 040576 473 WYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDS 507 (641)
Q Consensus 473 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 507 (641)
.-++.+.+.+.-.+. ......++.+|.+.|..+.|
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777664322222 23445566666666666533
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.86 E-value=0.026 Score=53.36 Aligned_cols=101 Identities=10% Similarity=0.050 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL----PMEAG-PALWGALL 527 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~l~ 527 (641)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ |..|. +..+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 455555444556888888888888877321111 0245666778888888888888888776 22222 34555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
..+...|+.++|...|+.+++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677788999999999999999888875
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.066 Score=48.66 Aligned_cols=136 Identities=10% Similarity=0.005 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh
Q 040576 421 NSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR 500 (641)
Q Consensus 421 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 500 (641)
+.++..+...|.+.-.+.++++.++....-++.....|.+.-.+.|+.+.|..+|+...+..+ ..+..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~----------- 248 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGL----------- 248 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhcc-----------
Confidence 344444444555555555555555544333444444455555555555555555554443111 11111
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 501 AGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 501 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
+............+.-.+++..|...+.++.+.+|.++..-+.-+-++.-.|+..+|++.++.|
T Consensus 249 ----------------q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 249 ----------------QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred ----------------chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112222223444555555666666666666666655555555555556666666666666
Q ss_pred hhCC
Q 040576 581 KEKE 584 (641)
Q Consensus 581 ~~~~ 584 (641)
.+..
T Consensus 313 ~~~~ 316 (366)
T KOG2796|consen 313 VQQD 316 (366)
T ss_pred hccC
Confidence 5443
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.83 E-value=0.15 Score=46.42 Aligned_cols=142 Identities=13% Similarity=0.105 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCch-HHHHHHHH
Q 040576 420 WNSMIMGYGMHGQGEKALEMFMEMEKRGPTP--NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV-EHYGCMVD 496 (641)
Q Consensus 420 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~ 496 (641)
+-.....+...|++++|...|+++...-... -......++.++.+.|+++.|...++...+.+.-.|.. ..+-.++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 3344555666777777777777777652221 12344556667777777777777777776644433332 11111111
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----------------hHHH
Q 040576 497 LLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG-----------------PYVL 559 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~ 559 (641)
++... ..... ......+...+|...++.+++..|+++. .-..
T Consensus 88 ~~~~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 88 SYYKQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HHHHH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 00000 0011223344555556666666665542 3345
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh
Q 040576 560 LSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
++..|.+.|.+..|..-++.+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 78889999999999999999944
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.77 E-value=0.011 Score=47.27 Aligned_cols=117 Identities=19% Similarity=0.125 Sum_probs=78.4
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHhcCC
Q 040576 496 DLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDP----GPYVLLSNIYASEGK 569 (641)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 569 (641)
-++...|+++.|++.|.+. . .+..+..|+.-..++.-.|+.++|..-+++++++.-+.. ..|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3466778888888887765 2 224566788888888888888888888888887654332 246666777888888
Q ss_pred hHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHH
Q 040576 570 WDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQ 626 (641)
Q Consensus 570 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~ 626 (641)
-+.|..-|+..-+.|-+ |...+|..++|=..- -..||.....+
T Consensus 131 dd~AR~DFe~AA~LGS~------------FAr~QLV~lNPYAAl--CN~MLa~~f~q 173 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK------------FAREQLVELNPYAAL--CNQMLADAFDQ 173 (175)
T ss_pred hHHHHHhHHHHHHhCCH------------HHHHHHHhcChHHHH--HHHHHHHHHHh
Confidence 88888888877666543 444455666665555 34455554443
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.77 E-value=0.0053 Score=45.22 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=48.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 040576 496 DLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVL 559 (641)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 559 (641)
..|.+.+++++|+++++.+ ...|+ +..|......+...|++++|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5677888888888888877 33344 5567777778888899999999999999888887654443
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.76 E-value=0.91 Score=47.38 Aligned_cols=186 Identities=13% Similarity=0.055 Sum_probs=89.0
Q ss_pred CCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCC-----chHHHHHHHHHHhcCChHHHHHHHHh
Q 040576 236 NREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRD-----VVSWNCMIDGYAKIGNVTSARNCFDR 310 (641)
Q Consensus 236 ~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~ 310 (641)
.|.+++|.++|-+|...|. .+....+.|++-...++++.--.-+ ...++.+.+.+.....+++|.+.|..
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666666666666644442 2344455555555555554422111 34555566666655566666655554
Q ss_pred cCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHH
Q 040576 311 MCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLST 390 (641)
Q Consensus 311 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 390 (641)
... -...+.++.+..++++-..+.+.+ +-+....-.+..++.+.|.-++|.+.|-.. +. | .
T Consensus 822 ~~~-----~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----k 882 (1189)
T KOG2041|consen 822 CGD-----TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----K 882 (1189)
T ss_pred ccc-----hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----H
Confidence 321 112344444444444433333322 223334445555566666666555443221 11 1 1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHH--------------HHHHHHHcCChHHHHHHHHHHHH
Q 040576 391 SLLTMYAKCGVMDLARNVFDNMTEKNVVSWNS--------------MIMGYGMHGQGEKALEMFMEMEK 445 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~~~~~~A~~~~~~m~~ 445 (641)
..++.+...++|.+|.++-++..-|.+.+.-+ -|..+.+.|+.-+|-+++.+|.+
T Consensus 883 aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 883 AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 23344555566666666665554443332211 13334555555556666666644
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.71 E-value=0.14 Score=41.37 Aligned_cols=141 Identities=17% Similarity=0.145 Sum_probs=88.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHH
Q 040576 427 YGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRD 506 (641)
Q Consensus 427 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 506 (641)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..++++.+-+.+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 34567788888888887763 24555666666555556666666666666442222 23444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 040576 507 SEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELE 586 (641)
Q Consensus 507 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 586 (641)
....+-.+. .+...+...+......|.-++-..++..+.+-+..+|..+..++.+|.+.|+..++.++++++-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444443 234445566777888999999889998888766777889999999999999999999999999999875
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.66 E-value=0.15 Score=52.38 Aligned_cols=175 Identities=15% Similarity=0.139 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 040576 319 WNILLALYVRCKD--YCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMY 396 (641)
Q Consensus 319 ~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 396 (641)
++..-.+|.+..+ +-+.+.-+++|.+.|-.|+.... ...|+-.|.+.+|-++|.+- |.. +..+.+|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHH
Confidence 4444455655544 34455567788888888887643 44567778888888877543 322 2234555
Q ss_pred HhcCCHHHHHHHHhhcCC--------------CChhHHHHHHHHHHHcCChHHHHHHHH------HHHHCCCC---CCHH
Q 040576 397 AKCGVMDLARNVFDNMTE--------------KNVVSWNSMIMGYGMHGQGEKALEMFM------EMEKRGPT---PNDA 453 (641)
Q Consensus 397 ~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~A~~~~~------~m~~~g~~---p~~~ 453 (641)
.....++.|.++...-.. .++.-=.+....+...|+.++|..+.- -+.+-+-+ .+..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 555555555555543321 111111223334455666666655431 11121111 2334
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLP 515 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 515 (641)
+...+...+.+...+..|-++|.+|-. ...++++....+++.+|..+-++.|
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 555555555566667777777777643 2456778888899999998888875
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.60 E-value=0.0033 Score=47.05 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC---CchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 521 ALWGALLSACSTHSNSELGKIVAQHLMELE----PRD---PGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
.+++.+...|...|++++|+..+++++++. +++ ..++..++.+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356667777777777777777777776531 221 3467888888999999999999888764
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.47 E-value=0.21 Score=51.30 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCchh--HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 040576 160 FPLLGKVCAGIRSLRE--GKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFED 217 (641)
Q Consensus 160 ~~~ll~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 217 (641)
|+..=++|.+.++..- ...-++++.+.|-.|+... +...++-.|++.+|.++|.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 3344455555554433 2233456667776666543 33445557788888888764
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.44 E-value=0.079 Score=43.98 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=62.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHh
Q 040576 495 VDLLGRAGLMRDSEELVSKL----PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG---PYVLLSNIYAS 566 (641)
Q Consensus 495 i~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 566 (641)
.....+.|++++|++.|+.+ |..|- ...-..++.++.+.+++++|...+++.+++.|.++. ++...+.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 44456778888888888877 32222 335566788899999999999999999999988765 45555655666
Q ss_pred cCC---------------hHHHHHHHHHhh
Q 040576 567 EGK---------------WDEVENLRRIMK 581 (641)
Q Consensus 567 ~g~---------------~~~A~~~~~~m~ 581 (641)
+.. ..+|...|++.+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv 126 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLV 126 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHH
Confidence 554 566777777763
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.043 Score=53.33 Aligned_cols=95 Identities=13% Similarity=0.026 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 040576 489 EHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYAS 566 (641)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 566 (641)
.++..+.-+|.+.+++.+|++..++. . .+++....-.-..+|...|+++.|+..|+++++++|.|-.+-..|+.+--+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45677888899999999999988876 2 346677777788899999999999999999999999998888888888776
Q ss_pred cCChHH-HHHHHHHhhhC
Q 040576 567 EGKWDE-VENLRRIMKEK 583 (641)
Q Consensus 567 ~g~~~~-A~~~~~~m~~~ 583 (641)
...+.+ ..++|..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 665555 47888888654
No 226
>PRK11906 transcriptional regulator; Provisional
Probab=96.30 E-value=0.076 Score=53.04 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhh---------ccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHh
Q 040576 432 QGEKALEMFMEMEK-RGPTPND-ATFICVLSACTHA---------GMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLG 499 (641)
Q Consensus 432 ~~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 499 (641)
..+.|+.+|.+... ..+.|+- ..|..+..++... .+..+|.+.-++..+ +.| |......+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHH
Confidence 35667778888772 2245553 3555555444321 233445555555554 223 3455555566666
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH--HHHHHHhcCChHHHHH
Q 040576 500 RAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVL--LSNIYASEGKWDEVEN 575 (641)
Q Consensus 500 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~ 575 (641)
-.|+++.|...|++. ...|+ ...|......+.-.|+.++|.+.++++++++|....+-.. .++.|... ..++|+.
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 666677777777776 34455 3355555556666777777777777777777765443332 23344443 3666666
Q ss_pred HHHH
Q 040576 576 LRRI 579 (641)
Q Consensus 576 ~~~~ 579 (641)
++-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6543
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.19 E-value=0.0094 Score=44.56 Aligned_cols=27 Identities=11% Similarity=-0.054 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 522 LWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
++..+..++...|++++|+..++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555556666555555544
No 228
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.42 Score=44.91 Aligned_cols=102 Identities=13% Similarity=0.088 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCCC-HHHHHH
Q 040576 451 NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAG---LMRDSEELVSKL-PMEAG-PALWGA 525 (641)
Q Consensus 451 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~~~-~~~~~~ 525 (641)
|...|..|...|...|+++.|...|....+..| ++...+..+..++.... +..++.++|+++ ..+|+ .....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 566788888888888888888888888876222 33556666666655432 456777888877 33444 445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
|...+...|++.+|...++++++..|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 56668888888888888888888877664
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.13 E-value=1.1 Score=41.33 Aligned_cols=187 Identities=16% Similarity=0.130 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHH
Q 040576 390 TSLLTMYAKCGVMDLARNVFDNMT-----EKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLS-ACT 463 (641)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~ 463 (641)
......+...+.+..+...+.... ......+......+...+++..+...+.........+. ........ .+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 141 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHH
Confidence 333444444444444444444332 12223333444444444445555555554444322211 11111111 344
Q ss_pred hhccHHHHHHHHHHhHHhhCCCC----chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCH
Q 040576 464 HAGMVLEGWWYFDLMQRIYKIEP----KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG--PALWGALLSACSTHSNS 536 (641)
Q Consensus 464 ~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~~ 536 (641)
..|+++.|...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+...++.
T Consensus 142 ~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 142 ELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555555555555422 111 1222222233344455555555555544 11122 33444455555555555
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 537 ELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 537 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
+.|...+..+....|.....+..++..+...|.++++...+.+.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555554444444444444445555555555554
No 230
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.12 E-value=0.024 Score=49.15 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=65.0
Q ss_pred HHhhcCCHHHHHHHHHhC-C-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 040576 497 LLGRAGLMRDSEELVSKL-P-MEAG-----PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGK 569 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~-~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 569 (641)
-+...|++++|..-|.+. . .++. ...|..-..++.+.+..+.|+....++++++|....++..-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777766654 1 1111 22344444567788889999999999999999888888888889999999
Q ss_pred hHHHHHHHHHhhhCCC
Q 040576 570 WDEVENLRRIMKEKEL 585 (641)
Q Consensus 570 ~~~A~~~~~~m~~~~~ 585 (641)
+++|++-++++.+..+
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999855443
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.08 E-value=0.026 Score=48.40 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 522 LWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
....++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|.+.++++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556777788999999999999999999999999999999999999999999999998843
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.96 Score=41.02 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=23.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHhcCChHHHHHH
Q 040576 526 LLSACSTHSNSELGKIVAQHLMEL----EPRDPGPYVLLSNIYASEGKWDEVENL 576 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (641)
.+-.+....|+..|+..++...+. .|++..+...|+.+|. .|+.+++.++
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 333344444555555555554332 2444445555554443 4455554443
No 233
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.02 E-value=1.7 Score=42.38 Aligned_cols=209 Identities=16% Similarity=0.132 Sum_probs=116.8
Q ss_pred hcCChHHHHHHHHhcCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHc---cCCH
Q 040576 297 KIGNVTSARNCFDRMCM--R-NVVSWNILLALYVRCKDYCECLRLFDRMIRGD-AKPNEAS--LMSVLTACAN---MGVI 367 (641)
Q Consensus 297 ~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~ll~~~~~---~g~~ 367 (641)
+.|..+.|...-++.-. | -.-.+...+...+..|+|+.|+++++.-.... +.++..- -..|+.+-.. ..+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 44555555555555421 2 23456677888888888888888887765532 3343321 2223332211 1234
Q ss_pred HHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 040576 368 DIGQWIHSYIQKCRIKPDVLL-STSLLTMYAKCGVMDLARNVFDNMTE--KNVVSWNSMIMGYGMHGQGEKALEMFMEME 444 (641)
Q Consensus 368 ~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 444 (641)
..|...-.+..+ +.||..- -..-..+|.+.|+..++-.+++.+-+ |.+..+ ..|....-.|.+..-+++..
T Consensus 246 ~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~ 319 (531)
T COG3898 246 ASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAK 319 (531)
T ss_pred HHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHH
Confidence 444444444433 2344221 22234567778888888888887765 333322 23333333344444444443
Q ss_pred HC-CCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh-cCCHHHHHHHHHhC
Q 040576 445 KR-GPTPND-ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR-AGLMRDSEELVSKL 514 (641)
Q Consensus 445 ~~-g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 514 (641)
+. .++||. .....+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++...+.+.
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 31 245553 4555666777777888777776666654 66777777777766543 47777777777765
No 234
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=2.9 Score=44.55 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=41.3
Q ss_pred HHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 040576 457 CVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNS 536 (641)
Q Consensus 457 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 536 (641)
..+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.++.++|+++.++ +.|...|..|+..+...-.+
T Consensus 639 kA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~ 706 (846)
T KOG2066|consen 639 KALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEF 706 (846)
T ss_pred HHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHH
Confidence 344455555555555555544421 223333333455666666666665 46888999999887776655
Q ss_pred HHHH
Q 040576 537 ELGK 540 (641)
Q Consensus 537 ~~a~ 540 (641)
-.+.
T Consensus 707 ~~~l 710 (846)
T KOG2066|consen 707 IKAL 710 (846)
T ss_pred HHHH
Confidence 4444
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.83 E-value=1.5 Score=40.41 Aligned_cols=221 Identities=12% Similarity=0.067 Sum_probs=142.1
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHH
Q 040576 330 KDYCECLRLFDRMIRGDAK-PNEASLMSVLTACANMGVIDIGQWIHSYIQKC-RIKPDVLLSTSLLTMYAKCGVMDLARN 407 (641)
Q Consensus 330 g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 407 (641)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444545444443221 12345555556666666666666666655542 223344555566666667777777777
Q ss_pred HHhhcCC--CCh-hHHHHHHH-HHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHh
Q 040576 408 VFDNMTE--KNV-VSWNSMIM-GYGMHGQGEKALEMFMEMEKRGP--TPNDATFICVLSACTHAGMVLEGWWYFDLMQRI 481 (641)
Q Consensus 408 ~~~~~~~--~~~-~~~~~li~-~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 481 (641)
.+..... ++. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~- 195 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK- 195 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh-
Confidence 7777664 221 22333333 68888999999999998855221 11233444444556778899999999999877
Q ss_pred hCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040576 482 YKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPR 552 (641)
Q Consensus 482 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 552 (641)
.... ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 -LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2223 3567778888888999999999998877 33344 445555555555777899999999999998887
No 236
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.79 E-value=0.12 Score=49.29 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=22.3
Q ss_pred HHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHH
Q 040576 327 VRCKDYCECLRLFDRMIRGD--AKPNEASLMSVLTACANMGVIDIGQW 372 (641)
Q Consensus 327 ~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~ 372 (641)
.+..+.++|+..+.+-...- ..---.++..+..+.+..|.++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 34566666666666655420 01111244445555555555555443
No 237
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.68 E-value=0.029 Score=52.76 Aligned_cols=83 Identities=11% Similarity=-0.013 Sum_probs=38.6
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHH
Q 040576 498 LGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVEN 575 (641)
Q Consensus 498 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 575 (641)
|.++|.+++|++.|.+. ...| ++.++..-..+|.+...+..|+.-...++.++..-..+|..-+.+-...|+..||.+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44455555555555432 2233 444444444445555555555555555544444433444444444444444444444
Q ss_pred HHHHh
Q 040576 576 LRRIM 580 (641)
Q Consensus 576 ~~~~m 580 (641)
-.+..
T Consensus 187 D~E~v 191 (536)
T KOG4648|consen 187 DCETV 191 (536)
T ss_pred hHHHH
Confidence 44444
No 238
>PRK15331 chaperone protein SicA; Provisional
Probab=95.52 E-value=0.4 Score=40.95 Aligned_cols=84 Identities=6% Similarity=-0.097 Sum_probs=36.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHH
Q 040576 428 GMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDS 507 (641)
Q Consensus 428 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 507 (641)
...|++++|..+|+-+.-.+.. +..-+..|..+|-..+++++|+..|..... .. .-|+..+-....+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHHH
Confidence 3445555555555544443211 223333344444444555555555554433 11 11122222334455555555555
Q ss_pred HHHHHhC
Q 040576 508 EELVSKL 514 (641)
Q Consensus 508 ~~~~~~~ 514 (641)
...|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5555444
No 239
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.48 E-value=0.22 Score=40.90 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 040576 448 PTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVD 496 (641)
Q Consensus 448 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 496 (641)
..|+..+..+++.+|+..|++..|.++.+...+.++++.+..+|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666667666667777777777766666666656666665554
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=1.3 Score=41.62 Aligned_cols=166 Identities=13% Similarity=0.052 Sum_probs=85.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhC
Q 040576 404 LARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYK 483 (641)
Q Consensus 404 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 483 (641)
...+.+++...+....--.-.......|++.+|..+|+...+.... +...-..+..+|...|+++.|..++..+-.. -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 3444444444332222222233445667777777777776665322 2344455666777777777777777665331 0
Q ss_pred CCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchHHHH
Q 040576 484 IEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELE--PRDPGPYVLL 560 (641)
Q Consensus 484 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l 560 (641)
-.........-+..+.+.....+..++-.+....| |...-..+...+...|+.+.|...+-.+++.+ -.+...-..|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 01111112223444445444444444444443334 34445556666667777777766666655543 3344555666
Q ss_pred HHHHHhcCChH
Q 040576 561 SNIYASEGKWD 571 (641)
Q Consensus 561 ~~~~~~~g~~~ 571 (641)
..++.-.|.-+
T Consensus 279 le~f~~~g~~D 289 (304)
T COG3118 279 LELFEAFGPAD 289 (304)
T ss_pred HHHHHhcCCCC
Confidence 66666555333
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.45 E-value=2.1 Score=42.33 Aligned_cols=164 Identities=9% Similarity=-0.024 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---hccHHHHHHHHHHhHHhhCCCCchHHHH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRG---PTPNDATFICVLSACTH---AGMVLEGWWYFDLMQRIYKIEPKVEHYG 492 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 492 (641)
....++-+|....+++..+++.+.|...- +.-....-....-++.+ .|+.++|.+++..+.. ..-.++.++|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHH
Confidence 34456667999999999999999998741 11122222234445666 8999999999999655 35667788888
Q ss_pred HHHHHHh----h-----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC-H---HHHHHHH---HHHH-hcC---C
Q 040576 493 CMVDLLG----R-----AGLMRDSEELVSKL-PMEAGPALWGALLSACSTHSN-S---ELGKIVA---QHLM-ELE---P 551 (641)
Q Consensus 493 ~li~~~~----~-----~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~-~---~~a~~~~---~~~~-~~~---p 551 (641)
.++..|- . ...+++|++.|.+. ..+|+...--.++..+...|. . .+...+- .... +.+ +
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 8777663 2 22478899999886 445654322222222223332 1 1222222 1111 111 1
Q ss_pred -CCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 552 -RDPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 552 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
.+-..+..++.++.-.|++++|.+..++|...
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 23345667888899999999999999999543
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.47 Score=44.41 Aligned_cols=121 Identities=12% Similarity=0.038 Sum_probs=87.6
Q ss_pred HHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCH
Q 040576 460 SACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGA---LLSACSTHSNS 536 (641)
Q Consensus 460 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~ 536 (641)
......|++.+|...|+..... .+-+...-..|+.+|...|+.+.|..++..+|.+-...-+.. -+..+.+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3456789999999999999871 223356667789999999999999999999975544444443 22223333332
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 537 ELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 537 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
.+. ..++.-...+|+|...-..++..|...|+.++|.+.+=.+..+
T Consensus 220 ~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 2234455678999999999999999999999999987777554
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.40 E-value=0.62 Score=46.76 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 385 DVLLSTSLLTMYAKCGVMDLARNVFDNMTE--KNV----VSWNSMIMGYGMHGQGEKALEMFMEMEK 445 (641)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~ 445 (641)
+...++.+..+|.+.|++++|+..|++..+ |+. .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555555442 322 2355555555555555555555555554
No 244
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=5.1 Score=43.21 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=38.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040576 494 MVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLM 547 (641)
Q Consensus 494 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 547 (641)
++..+....+.+++..+.+..+. -++..|..++..+.+.+.++.-.+...+++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 45567777888888888888763 378888888988888887666655555544
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.25 E-value=0.14 Score=47.30 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=32.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELEPRD---PGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
|..++...|+++.|...|..+.+-.|++ |..+.-|+.+..+.|+.++|..++++..
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4555555566666666665555544433 3455556666666666666666666653
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.23 E-value=1.1 Score=46.73 Aligned_cols=161 Identities=14% Similarity=0.047 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHH----hhccHHHHHHHHHHhHHhhCCCCch
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKR-GPTPND-----ATFICVLSACT----HAGMVLEGWWYFDLMQRIYKIEPKV 488 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~-----~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~ 488 (641)
.+..++....-.|+-+.+++.+.+..+. |+.-.. -.|..++..+. ...+.+.|.++++.+.+ .-|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~---~yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK---RYPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH---hCCCc
Confidence 3444555555567777777777665543 222111 12333333222 24567788888888877 33665
Q ss_pred HHHHH-HHHHHhhcCCHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH-
Q 040576 489 EHYGC-MVDLLGRAGLMRDSEELVSKLP------MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLL- 560 (641)
Q Consensus 489 ~~~~~-li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l- 560 (641)
..|.. -.+.+...|++++|++.|++.- .+.....+.-+..++....++++|...+.++.+...-+...|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 44443 4566778889999999988652 112233455667778888899999999999888776655554444
Q ss_pred HHHHHhcCCh-------HHHHHHHHHhhh
Q 040576 561 SNIYASEGKW-------DEVENLRRIMKE 582 (641)
Q Consensus 561 ~~~~~~~g~~-------~~A~~~~~~m~~ 582 (641)
+.+|...|+. ++|.+++++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4556677888 888888888754
No 247
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.21 E-value=7 Score=44.01 Aligned_cols=159 Identities=13% Similarity=0.029 Sum_probs=94.7
Q ss_pred CChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCc
Q 040576 237 REVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNV 316 (641)
Q Consensus 237 g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 316 (641)
++++.|+.-+..+. ...|.-.++.--+.|-++.|+.++..-.+.-..+|.+..+.+.....+++|.-.|+...+
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--- 967 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK--- 967 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---
Confidence 44555555555442 223334444444555555555555433333355666666777777888888777777643
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 040576 317 VSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEA--SLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLT 394 (641)
Q Consensus 317 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 394 (641)
....+.+|..+|+|.+|+.+..+|.. .-+.. +-..|..-+...++.-+|-++..+.... ..-.+.
T Consensus 968 --lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ 1034 (1265)
T KOG1920|consen 968 --LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVA 1034 (1265)
T ss_pred --HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHH
Confidence 23456778888888888888887743 12222 1245666667777777776666555432 123456
Q ss_pred HHHhcCCHHHHHHHHhhcCC
Q 040576 395 MYAKCGVMDLARNVFDNMTE 414 (641)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~~~ 414 (641)
.||+...|++|.++-.....
T Consensus 1035 ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1035 LLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHhhHhHHHHHHHHHHhccc
Confidence 67777888888877766553
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.17 E-value=2.6 Score=38.89 Aligned_cols=141 Identities=16% Similarity=0.209 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGP--TPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVD 496 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 496 (641)
.|-.=+..-.+.|++++|...|+.+..+.+ +-...+...++-++.+.+++++|+...++..+.++-.||+. |...+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 333444445567888888888888776521 11244566666777778888888888888777566666643 333333
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----------------chHH
Q 040576 497 LLGRAGLMRDSEELVSKLP-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDP-----------------GPYV 558 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~ 558 (641)
+++ .|..++ ...|. .-...|...++.++..-|++. ..=.
T Consensus 115 gLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 115 GLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 333 111111 00111 112223333333444444432 2234
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 559 LLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
.+++-|.+.|.|..|..-++.|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 5677899999999999999998655
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.17 E-value=0.94 Score=46.49 Aligned_cols=127 Identities=16% Similarity=0.156 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHH
Q 040576 226 WNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSAR 305 (641)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 305 (641)
.+.++.-+-+.|..+.|+++... . ..-.....+.|+++.|.++..+.. +...|..|.+...+.|+++-|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 44445555555555555554332 1 122233445556665555554443 3345666666666666666666
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 040576 306 NCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWI 373 (641)
Q Consensus 306 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 373 (641)
+.|.+... |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..++
T Consensus 368 ~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 368 ECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp HHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 66665433 55566666666666666555555555441 33334444444555544333
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=95.16 E-value=1.4 Score=44.35 Aligned_cols=141 Identities=9% Similarity=0.007 Sum_probs=94.7
Q ss_pred CHHHHHHHHhhcC---CCC---hhHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 040576 401 VMDLARNVFDNMT---EKN---VVSWNSMIMGYGMH---------GQGEKALEMFMEMEKRGPTPNDATFICVLSACTHA 465 (641)
Q Consensus 401 ~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 465 (641)
..+.|..+|.+.. +-| ...|..+..++... ....+|.++-++..+.+. -|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 4577888899887 433 34555554444322 234567777777887653 3777777777777888
Q ss_pred ccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCH---HHHHHHHHHHHhcCCHHHHH
Q 040576 466 GMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSK-LPMEAGP---ALWGALLSACSTHSNSELGK 540 (641)
Q Consensus 466 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~---~~~~~l~~~~~~~g~~~~a~ 540 (641)
|+++.|...|++... +.|| ...|......+.-.|+.++|.+.+++ +...|.. ......+..|..+ ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 889999999999977 6777 45566666667779999999999998 4444543 3333344455555 456677
Q ss_pred HHHHHH
Q 040576 541 IVAQHL 546 (641)
Q Consensus 541 ~~~~~~ 546 (641)
.+|-+-
T Consensus 428 ~~~~~~ 433 (458)
T PRK11906 428 KLYYKE 433 (458)
T ss_pred HHHhhc
Confidence 766543
No 251
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.14 E-value=0.061 Score=46.26 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC----hHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCC
Q 040576 536 SELGKIVAQHLMELEPRDPGPYVLLSNIYASEGK----WDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPH 611 (641)
Q Consensus 536 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 611 (641)
+++|+.-|+.++.++|+...++..++++|...+. ..+|.++|++..+- |. +....+|++
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~---------------Fq--kAv~~~P~n 113 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEY---------------FQ--KAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---------------HH--HHHHH-TT-
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH---------------HH--HHHhcCCCc
Confidence 5667788888899999999999999999886653 34455555554321 11 116788999
Q ss_pred chhhHHHHHHHH
Q 040576 612 RKCIVYSMLGEI 623 (641)
Q Consensus 612 ~~~~~~~~l~~l 623 (641)
+. ....|+.-
T Consensus 114 e~--Y~ksLe~~ 123 (186)
T PF06552_consen 114 EL--YRKSLEMA 123 (186)
T ss_dssp HH--HHHHHHHH
T ss_pred HH--HHHHHHHH
Confidence 88 77777664
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.11 E-value=2.9 Score=42.32 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=67.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 040576 323 LALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVM 402 (641)
Q Consensus 323 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 402 (641)
|.-.-+..+.+.-+++-++..+ +.||-.+.-.++ +--......++++++++..+.|-. . |.+....
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s~~~ 240 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----S-------LGKSQFL 240 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----h-------hchhhhh
Confidence 3333445555665666666655 345543332222 223344567777777776664410 0 0000000
Q ss_pred HHHHHHHhhcCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHH
Q 040576 403 DLARNVFDNMTEKN----VVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP-NDATFICVLSACTHAGMVLEGWWYFDL 477 (641)
Q Consensus 403 ~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 477 (641)
...-..++....++ ...-..+..+..+.|+.++|++.|++|.+....- +......|+.++...+.+.++..++.+
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 00000111111111 1222335555566677777777777766532111 222455566666666777666666665
Q ss_pred hH
Q 040576 478 MQ 479 (641)
Q Consensus 478 ~~ 479 (641)
-.
T Consensus 321 Yd 322 (539)
T PF04184_consen 321 YD 322 (539)
T ss_pred hc
Confidence 43
No 253
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.10 E-value=0.067 Score=32.06 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 522 LWGALLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
.|..+...+...|++++|+..++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777777777777764
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.09 E-value=0.84 Score=38.03 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=64.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh
Q 040576 423 MIMGYGMHGQGEKALEMFMEMEKRGP--TPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR 500 (641)
Q Consensus 423 li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 500 (641)
-.....+.|++++|.+.|+.+..+-. .-....-..++.++.+.|++++|...+++.++.+.-.|++ -|.....+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence 34445566777777777777776521 1123455567777777777777777777777733333332 23333334333
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 501 AGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 501 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
....+..+.-+- ..+ ...+....|...|+.+++.-|++.
T Consensus 95 ~~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 222221111111 111 122335678888899999999875
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.09 E-value=0.049 Score=32.76 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040576 521 ALWGALLSACSTHSNSELGKIVAQHLMELEPR 552 (641)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 552 (641)
..|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45667777777788888888888888877775
No 256
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.03 E-value=0.31 Score=41.62 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHH----hhCCCCchHH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQR----IYKIEPKVEH 490 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 490 (641)
....++..+...|++++|..+.+++.... +-+...|..++.++...|+..+|.++|+.+.+ ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34556666777788888888888777753 22556777788888888888888877776643 3577777554
No 257
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.03 E-value=1.3 Score=39.40 Aligned_cols=179 Identities=16% Similarity=0.116 Sum_probs=97.5
Q ss_pred CCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 040576 400 GVMDLARNVFDNMT--EK-NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFD 476 (641)
Q Consensus 400 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 476 (641)
|-++-|+--|.+.. .| -+..||-+.--+...|+++.|.+.|+...+....-+-...+.-| ++.-.|+++-|.+-|.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHH
Confidence 44444444444333 23 24567777777888888888888888887753332222222222 2334577777776665
Q ss_pred HhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCC--
Q 040576 477 LMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACS-THSNSELGKIVAQHLMELEPRD-- 553 (641)
Q Consensus 477 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~p~~-- 553 (641)
..-+...-.|-...|-.++ .+.-++.+|..-+.+--.+-+..-|...+-.+. .+=.. +.+++++.+...++
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTS 231 (297)
T ss_pred HHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHH
Confidence 5533112222223333222 234456666654433212345555554444332 22111 23334443333332
Q ss_pred -----CchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 040576 554 -----PGPYVLLSNIYASEGKWDEVENLRRIMKEKEL 585 (641)
Q Consensus 554 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 585 (641)
.++|.-|+.-|...|+.++|..+++-....++
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35889999999999999999999998866543
No 258
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.98 E-value=0.31 Score=40.05 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=33.8
Q ss_pred CCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 040576 483 KIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL----PMEAGPALWGALLSAC 530 (641)
Q Consensus 483 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~ 530 (641)
...|+..+..+++.+|+..|++..|+++++.. +++-+...|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45577777788888888888888888777655 4445566777777643
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.98 E-value=1.7 Score=36.78 Aligned_cols=85 Identities=12% Similarity=0.003 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChH
Q 040576 161 PLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVG 240 (641)
Q Consensus 161 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 240 (641)
..++..+...+.+.....+++.+.+.+ ..+...++.++..|++.+ ..+..+.++. ..+......+++.|.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 345555555556666666666666555 245556666666666543 2333344431 122333344555555555555
Q ss_pred HHHHHHhhC
Q 040576 241 FARELFDFM 249 (641)
Q Consensus 241 ~A~~~~~~m 249 (641)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555443
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.96 E-value=1.4 Score=37.32 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=15.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 040576 358 LTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYA 397 (641)
Q Consensus 358 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 397 (641)
+..+...+.......+++.+...+ ..+....+.++..|+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 333333344444444444444333 133333344444443
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.79 E-value=0.33 Score=44.96 Aligned_cols=95 Identities=17% Similarity=0.204 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP--NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMV 495 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 495 (641)
.|+.-+..| +.|++.+|...|....+....- ....+..|..++...|+++.|..+|..+.+.++-.|. ++.+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355544444 4566777777777776653211 1234556677777777777777777777664444444 35555666
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 040576 496 DLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~ 514 (641)
....+.|+.++|...|++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 6666666666666666655
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.79 E-value=1.1 Score=45.88 Aligned_cols=157 Identities=9% Similarity=-0.033 Sum_probs=103.1
Q ss_pred HHHHhCCChHHHHHHHh--hCC-CCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHH
Q 040576 231 DGYVKNREVGFARELFD--FMP-ERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNC 307 (641)
Q Consensus 231 ~~~~~~g~~~~A~~~~~--~m~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 307 (641)
....-.|+++++.++.. ++. .-+..-.+.++.-+-+.|..+.|+++-..- ..--+...++|+++.|.++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHH
Confidence 34455777887666554 221 112445778888888999999998886532 2445667788999999888
Q ss_pred HHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchh
Q 040576 308 FDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVL 387 (641)
Q Consensus 308 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 387 (641)
-++.. +...|..|.......|+++-|.+.|.+..+ |..++-.|.-.|+.+...++.+.....|-
T Consensus 341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----- 404 (443)
T PF04053_consen 341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD----- 404 (443)
T ss_dssp CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----
Confidence 77655 556899999999999999999999988754 66777778888888888888877777652
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhc
Q 040576 388 LSTSLLTMYAKCGVMDLARNVFDNM 412 (641)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~~ 412 (641)
++....++...|+.++..+++.+.
T Consensus 405 -~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 -INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344445555667777766666543
No 263
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.74 E-value=0.18 Score=46.49 Aligned_cols=73 Identities=14% Similarity=-0.036 Sum_probs=54.7
Q ss_pred CCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCC----------------CchhHHHHHHHHHHhCCCCChhHHHHH
Q 040576 135 NDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIR----------------SLREGKKVHARIVKCGFELDLFVRNSL 198 (641)
Q Consensus 135 g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~~~~~~~~~~g~~~~~~~~~~l 198 (641)
+.++-....++ .|++.|+.-|..+|+.||..+-+-. .-+-+..++++|...|+.||..+-..|
T Consensus 86 ~HveFIy~ALk-~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 86 THVEFIYTALK-YMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred chHHHHHHHHH-HHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 33444444556 7888888888888888887765432 224577899999999999999999999
Q ss_pred HHHHHhcCCH
Q 040576 199 IHMYSVCGEV 208 (641)
Q Consensus 199 i~~~~~~g~~ 208 (641)
++++.+.|..
T Consensus 165 vn~FGr~~~p 174 (406)
T KOG3941|consen 165 VNAFGRWNFP 174 (406)
T ss_pred HHHhcccccc
Confidence 9999887753
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.73 E-value=1.2 Score=46.35 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=72.5
Q ss_pred cCCHHHHHHHHhhcCC--CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhhccHHHHH
Q 040576 399 CGVMDLARNVFDNMTE--KNVVSWNSM-IMGYGMHGQGEKALEMFMEMEKRG---PTPNDATFICVLSACTHAGMVLEGW 472 (641)
Q Consensus 399 ~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~a~ 472 (641)
....+.|.++++.+.+ |+...|... .+.+...|+.++|++.|++..... .+.....+--+...+.-.++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4566778888887776 666666544 345566788888888888655321 1122334555666777788888888
Q ss_pred HHHHHhHHhhCCCCchHHHHHH-HHHHhhcCCH-------HHHHHHHHhCC
Q 040576 473 WYFDLMQRIYKIEPKVEHYGCM-VDLLGRAGLM-------RDSEELVSKLP 515 (641)
Q Consensus 473 ~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~-------~~A~~~~~~~~ 515 (641)
+.|..+.+...- +...|..+ .-++...|+. ++|.++|.+.+
T Consensus 326 ~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 888888773222 23333332 3345566666 78888887763
No 265
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.72 E-value=6.2 Score=40.98 Aligned_cols=408 Identities=12% Similarity=0.069 Sum_probs=217.6
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcc-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHH
Q 040576 120 DAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHY-TFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSL 198 (641)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 198 (641)
+-..|+.+|.---...+...+...|. .+... .|..+ -|......=.+.|..+.+.++|++-+. |++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~-~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYD-IFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHH-HHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 44567777765555555555555665 44432 34433 344444444567778888888887775 456677777666
Q ss_pred HHHHH-hcCCHHHHHHHHhcCC------CCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhc---C-
Q 040576 199 IHMYS-VCGEVLDARKVFEDGP------VWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVD---V- 267 (641)
Q Consensus 199 i~~~~-~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~---~- 267 (641)
+..+. ..|+.+...+.|+... -.....|-..|.--...+++.....+|++..+-...-|+..-.-|.+ .
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQN 199 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcC
Confidence 65554 3566666777776522 12445577777766777777777777777755444444433332221 1
Q ss_pred -----CChHHHHHHHhhcCCCCchHHHHHHHHHHhcC-ChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 040576 268 -----GDMEAANGLFDLMPFRDVVSWNCMIDGYAKIG-NVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDR 341 (641)
Q Consensus 268 -----g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 341 (641)
...+++.++-...... ......+ ..+.-....+....+ .+..+++.....+
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~---------~~~~~~~~~~e~~~~~v~~~~~~--------------s~~l~~~~~~l~~ 256 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAER---------SKITHSQEPLEELEIGVKDSTDP--------------SKSLTEEKTILKR 256 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhh---------hhcccccChhHHHHHHHhhccCc--------------cchhhHHHHHHHH
Confidence 1111111110000000 0000000 000000000000000 0011111111111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CC----CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 040576 342 MIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKC---RI----KPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE 414 (641)
Q Consensus 342 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 414 (641)
... .--.++-..-........++.-++. .+ +++...|...++--.+.|+.+.+.-.|++..-
T Consensus 257 ~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli 325 (577)
T KOG1258|consen 257 IVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI 325 (577)
T ss_pred HHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh
Confidence 000 0000111111122222223333222 11 22456777777888888999999999988875
Q ss_pred C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHH
Q 040576 415 K---NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEH 490 (641)
Q Consensus 415 ~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 490 (641)
| =...|-..+.-....|+.+-|..++....+--++-.+.+-..-..-+...|++..|..+++.+... . |+ +..
T Consensus 326 ~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~ 402 (577)
T KOG1258|consen 326 PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEV 402 (577)
T ss_pred HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-Cchhhh
Confidence 3 234566666656666898888888877666433323332222222345578999999999999873 3 65 333
Q ss_pred HHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 040576 491 YGCMVDLLGRAGLMRDSE---ELVSKL-PMEAGPALWGALLS-----ACSTHSNSELGKIVAQHLMELEPRDPGPYVLLS 561 (641)
Q Consensus 491 ~~~li~~~~~~g~~~~A~---~~~~~~-~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 561 (641)
-..-+....+.|..+.+. +++... +.+-+..+...+.- .+.-.++.+.|..++.++.+..|++-..|..++
T Consensus 403 ~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 403 VLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELI 482 (577)
T ss_pred HHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHH
Confidence 334466677888888888 555544 22233333322222 245678999999999999999999998899888
Q ss_pred HHHHhcC
Q 040576 562 NIYASEG 568 (641)
Q Consensus 562 ~~~~~~g 568 (641)
......+
T Consensus 483 ~~~~~~~ 489 (577)
T KOG1258|consen 483 RFELIQP 489 (577)
T ss_pred HHHHhCC
Confidence 8877665
No 266
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.66 E-value=0.13 Score=34.52 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhh
Q 040576 556 PYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMC 630 (641)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~ 630 (641)
.++.++-++.+.|++++|.+..+.+ .+.+|++.. ...+...+..++.+-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~l------------------------L~~eP~N~Q--a~~L~~~i~~~i~kd 51 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDAL------------------------LEIEPDNRQ--AQSLKELIEDKIQKD 51 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------------------------HHHTTS-HH--HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHH------------------------HhhCCCcHH--HHHHHHHHHHHHhcc
Confidence 4567888999999999999999999 889999999 888888877777654
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.63 E-value=0.33 Score=44.79 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=79.6
Q ss_pred HHHHHHhhcC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc----------
Q 040576 404 LARNVFDNMT--EKNVVSWNSMIMGYGMH-----GQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAG---------- 466 (641)
Q Consensus 404 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------- 466 (641)
..++.|..+. ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 57888888888887654 556667777899999999999999999999876532
Q ss_pred ------cHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCH
Q 040576 467 ------MVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLM 504 (641)
Q Consensus 467 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 504 (641)
.-+-++.++++|.. +|+.||-++-..|++++++.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 22457889999988 99999999999999999998864
No 268
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.57 E-value=5.5 Score=39.71 Aligned_cols=128 Identities=12% Similarity=0.072 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhC-CCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHH
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYK-IEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPALW-GALLSAC 530 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~ 530 (641)
.|...+++..+...++.|..+|-++.+ .+ +.+++..+++++.-++ .|+..-|..+|+-- ..-||...| .-.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 455566666666777777777777776 44 5566677777776543 55666777777642 223444333 4455555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 531 STHSNSELGKIVAQHLMELEPRD--PGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
...++-+.|..+|+..++.-.++ ...|..++.--..-|+...|..+=++|.+.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 66677777777777655422222 345666666666667766666665555443
No 269
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.52 E-value=0.044 Score=32.88 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 555 GPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
..+..++.+|...|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999843
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.19 E-value=4.6 Score=37.31 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=105.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040576 384 PDVLLSTSLLTMYAKCGVMDLARNVFDNMTEK------NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFIC 457 (641)
Q Consensus 384 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 457 (641)
|-...|+.-+ .-.+.|++++|.+.|+.+... ...+--.++-++.+.+++++|+...++....-..-...-|..
T Consensus 33 p~~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3344555443 445779999999999999852 223556677888999999999999999887533322334444
Q ss_pred HHHHHHh-------hccHHH---HHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH--HHHH
Q 040576 458 VLSACTH-------AGMVLE---GWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPA--LWGA 525 (641)
Q Consensus 458 ll~~~~~-------~g~~~~---a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ 525 (641)
-|.+++. ..+... |..-|+.++. --||.. -..+|..-+..+. +.. .=..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~---ryPnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~ 172 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ---RYPNSR-------------YAPDAKARIVKLN---DALAGHEMA 172 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHH---HCCCCc-------------chhhHHHHHHHHH---HHHHHHHHH
Confidence 4444442 123333 3333444433 123321 1111111111110 000 0113
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELEPRDP---GPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
+..-|.+.|.+..|..-++.+++--|+.+ ..+..+..+|...|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 44557788888888888888887665544 3556667778888888888887766633
No 271
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.14 E-value=0.12 Score=44.90 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=63.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC-----chHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecc
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPRDP-----GPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASE 602 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 602 (641)
+-+...|++++|..-|..++++.|.-+ ..|..-+.++.+.+.|+.|++-..+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa---------------------- 160 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKA---------------------- 160 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh----------------------
Confidence 346788999999999999999998754 36677788899999999999999988
Q ss_pred cccccCCCCchhhHHHHHHHHHHHHHhhhcccccccc
Q 040576 603 SIVENCPPHRKCIVYSMLGEIGAQMKMCRRDVASQIS 639 (641)
Q Consensus 603 ~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 639 (641)
+++.|.... ....=..++.++.+...++.+..+
T Consensus 161 --iel~pty~k--Al~RRAeayek~ek~eealeDyKk 193 (271)
T KOG4234|consen 161 --IELNPTYEK--ALERRAEAYEKMEKYEEALEDYKK 193 (271)
T ss_pred --HhcCchhHH--HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 555665555 444444455555555555554443
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.00 E-value=7.4 Score=38.95 Aligned_cols=150 Identities=10% Similarity=-0.022 Sum_probs=83.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc--hH
Q 040576 415 KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP---NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK--VE 489 (641)
Q Consensus 415 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 489 (641)
....+|..++..+.+.|+++.|...+.++...+... .+.....-...+...|+..+|+..++.... ..+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~-~~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK-CRLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhhhccccc
Confidence 445678888888999999999999888887753221 233444445566677888888888877766 112111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 040576 490 HYGCMVDLLGRAGLMRDSEEL-VSKLPMEAGPALWGALLSACSTH------SNSELGKIVAQHLMELEPRDPGPYVLLSN 562 (641)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 562 (641)
....+...+.. ..+..... ........-...+..+..-+... ++.+++...|+.+.++.|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000011222223333333 78899999999999999988888888887
Q ss_pred HHHhc
Q 040576 563 IYASE 567 (641)
Q Consensus 563 ~~~~~ 567 (641)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76543
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=0.7 Score=43.83 Aligned_cols=160 Identities=11% Similarity=-0.005 Sum_probs=115.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHH----HHHHHHhhcCC
Q 040576 428 GMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYG----CMVDLLGRAGL 503 (641)
Q Consensus 428 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~ 503 (641)
...|+..+|...|+++.+. .+-|...+...=.+|...|+...-...++++.- .-.++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4578888999999999886 344677787788899999999998888888876 2345544443 34455668999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCChHHHHHHH
Q 040576 504 MRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPR----DPGPYVLLSNIYASEGKWDEVENLR 577 (641)
Q Consensus 504 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (641)
+++|++.-++. .+.+ |.-...++...+...|+++++.++..+-...-.. -...|-..+-.+...+.++.|++++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998887 3333 3335566677788889999999887764332111 1235667777888999999999999
Q ss_pred HHhhhCCCcccCc
Q 040576 578 RIMKEKELEKAVG 590 (641)
Q Consensus 578 ~~m~~~~~~~~~~ 590 (641)
++=.-+..+++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 9866555555554
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.55 E-value=0.066 Score=32.15 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 555 GPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
..|..++.+|...|++++|+..+++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4688999999999999999999999944
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.42 E-value=1.8 Score=43.84 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEE
Q 040576 524 GALLSACSTHSNSELGKIVAQHLMELEPR--DPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLV 594 (641)
Q Consensus 524 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 594 (641)
..+..++.+.|+.++|++.++.+++..|. +......|+.+|...+.+.++..++.+--+....+....+|-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 44566666777777777777777766554 344666777777777777777777777644444444444444
No 276
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.42 E-value=14 Score=40.25 Aligned_cols=128 Identities=13% Similarity=0.038 Sum_probs=75.6
Q ss_pred HcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHH
Q 040576 429 MHGQGEKALEMFMEMEKRG-PTPNDA--TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMR 505 (641)
Q Consensus 429 ~~~~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 505 (641)
...+.+.|..++.+..... ..+... ....+.......+...++...++.... ...+......-+....+.++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHH
Confidence 3456688999998875543 333322 233333333333225667777776543 1234444555566666899999
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 040576 506 DSEELVSKLPM--EAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNI 563 (641)
Q Consensus 506 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 563 (641)
.+...+..|+. +-...-.-=+..++...|+.++|...|+.+.. +. ..|..|+..
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LAa~ 385 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVAAQ 385 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHHHH
Confidence 99999999852 11222223355566678999999999998743 22 355555533
No 277
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=5.5 Score=43.01 Aligned_cols=177 Identities=11% Similarity=0.031 Sum_probs=100.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcC
Q 040576 354 LMSVLTACANMGVIDIGQWIHSYIQKCRIKPD--VLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHG 431 (641)
Q Consensus 354 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 431 (641)
...-+....+...++.|..+- ...+..++ ........+-+.+.|++++|...|-+...--.. ..+|.-|....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq 411 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHH
Confidence 334455556666666665543 33333333 223333444555678888888777655431111 22455566666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHH
Q 040576 432 QGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELV 511 (641)
Q Consensus 432 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 511 (641)
+..+-..+++.+.+.|+. +..--..|+.+|.+.++.+.-.++.+...+ ....-| ....+..+.+.+-.++|..+-
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd---~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFD---VETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeee---HHHHHHHHHHhChHHHHHHHH
Confidence 677777777888887766 333344677888888888777766655432 111112 233456666777777777766
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040576 512 SKLPMEAGPALWGALLSACSTHSNSELGKIVAQH 545 (641)
Q Consensus 512 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (641)
.+... .......+ +...+++++|.+.++.
T Consensus 487 ~k~~~--he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 487 TKFKK--HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred HHhcc--CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 66542 22222222 3456778888777653
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.34 E-value=0.15 Score=31.20 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 556 PYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999853
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.33 E-value=2.7 Score=40.56 Aligned_cols=219 Identities=10% Similarity=0.029 Sum_probs=117.6
Q ss_pred HhcCChHHHHHHHHhcCCC------CcchHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHcc
Q 040576 296 AKIGNVTSARNCFDRMCMR------NVVSWNILLALYVRCKDYCECLRLFDRMIRG--DAKPNE---ASLMSVLTACANM 364 (641)
Q Consensus 296 ~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~~~~~ll~~~~~~ 364 (641)
....+.++|+..+.+.... ...+|..+..+..+.|.+++++..--.-.+. ...-.. ..|..+..++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777765221 2346777788888888888876543222111 011111 1233344444444
Q ss_pred CCHHHHHHHHHHHHHc-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcC
Q 040576 365 GVIDIGQWIHSYIQKC-RIKP---DVLLSTSLLTMYAKCGVMDLARNVFDNMTE-------K--NVVSWNSMIMGYGMHG 431 (641)
Q Consensus 365 g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~ 431 (641)
-++.+++.+-..-... |..+ .-...-++..++...+.++++++.|+...+ + ....+-.|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444444333321 2222 122333456666667777777777776542 1 2246777777888888
Q ss_pred ChHHHHHHHHHHHHC----CCCCCHHHHH-----HHHHHHHhhccHHHHHHHHHHhHHh---hCCCCc-hHHHHHHHHHH
Q 040576 432 QGEKALEMFMEMEKR----GPTPNDATFI-----CVLSACTHAGMVLEGWWYFDLMQRI---YKIEPK-VEHYGCMVDLL 498 (641)
Q Consensus 432 ~~~~A~~~~~~m~~~----g~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~ 498 (641)
++++|.-+..+..+. ++.--..-|. .+.-++...|....|.+.-++..+. .|-.+. .....++.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 888887776665442 2221112222 2333455666666666666655441 222221 23344566777
Q ss_pred hhcCCHHHHHHHHHhC
Q 040576 499 GRAGLMRDSEELVSKL 514 (641)
Q Consensus 499 ~~~g~~~~A~~~~~~~ 514 (641)
-..|+.+.|+.-|+..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 7777777777766654
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.32 E-value=3.8 Score=33.44 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCC
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKI 484 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 484 (641)
....-+..+...|+-|+-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+ .|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 3445566777788888888888877653 366777777888888888888888888888877 554
No 281
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.31 E-value=0.71 Score=37.32 Aligned_cols=91 Identities=11% Similarity=-0.004 Sum_probs=59.8
Q ss_pred HHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHH---HHHHHHHHHHhcC
Q 040576 461 ACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL---PMEAGPA---LWGALLSACSTHS 534 (641)
Q Consensus 461 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~---~~~~l~~~~~~~g 534 (641)
++...|+.+.|++.|.+... -.+-....||.-..++--+|+.++|++-+++. ....... .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45667888888888877765 12234667777778888888888888777765 1111222 2333334477888
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 040576 535 NSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 535 ~~~~a~~~~~~~~~~~p~~ 553 (641)
+.+.|..-|+.+-+++...
T Consensus 130 ~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKF 148 (175)
T ss_pred chHHHHHhHHHHHHhCCHH
Confidence 8888888888887776543
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.26 E-value=2.2 Score=37.62 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCch------HH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDA--TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV------EH 490 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~ 490 (641)
.+..+...|++.|+.+.|++.|.++.+....+... .+..++..+...|++..+.....++........+. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 56667777778888888888888877765444433 45566777777788887777777766521111111 12
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC
Q 040576 491 YGCMVDLLGRAGLMRDSEELVSKLP 515 (641)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~~~ 515 (641)
|..+ .+...+++.+|.+.|-+..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2345678888888777663
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=6.7 Score=35.86 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=9.4
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 040576 322 LLALYVRCKDYCECLRLFDR 341 (641)
Q Consensus 322 li~~~~~~g~~~~A~~~~~~ 341 (641)
-...|..+|.++-|-..+++
T Consensus 97 As~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHhCCcchHHHHHHH
Confidence 34445555555544444443
No 284
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.89 E-value=30 Score=42.54 Aligned_cols=306 Identities=8% Similarity=0.038 Sum_probs=157.7
Q ss_pred HHHhcCCChHHHHHHHhhcC----CCC--chHHHHHHHHHHhcCChHHHHHHHHh-cCCCCcchHHHHHHHHHHcCChHH
Q 040576 262 SGYVDVGDMEAANGLFDLMP----FRD--VVSWNCMIDGYAKIGNVTSARNCFDR-MCMRNVVSWNILLALYVRCKDYCE 334 (641)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~~~----~~~--~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 334 (641)
.+-.+.+.+..|...++.-. +.+ ...|..+...|+..+++|....+... ...++ ...-|......|+|..
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWAD 1467 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHH
Confidence 34445556666666666521 111 33444555567777777766665552 22222 2234445566788888
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCch-hHHHHHHHHHHhcCCHHHHHHHHhhc
Q 040576 335 CLRLFDRMIRGDAKPN-EASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDV-LLSTSLLTMYAKCGVMDLARNVFDNM 412 (641)
Q Consensus 335 A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 412 (641)
|...|+.+.+.+ |+ ..+++.++......|.++......+...... .+.. ..++.=+.+--+.++++.......
T Consensus 1468 a~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 888888887643 43 5566666666666666666665444443322 2222 222223344456667776666555
Q ss_pred CCCChhHHHHH--HHHHHHcCChHH--HHHHHHHHHHCCCCCC---------HHHHHHHHHHHHhhccHHHHHHHHHHhH
Q 040576 413 TEKNVVSWNSM--IMGYGMHGQGEK--ALEMFMEMEKRGPTPN---------DATFICVLSACTHAGMVLEGWWYFDLMQ 479 (641)
Q Consensus 413 ~~~~~~~~~~l--i~~~~~~~~~~~--A~~~~~~m~~~g~~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 479 (641)
+.+..+|... +..+.+..+-|. -.+..+.+++.-+.|- ...|..++.... . .+.-....
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~----l---~el~~~~~ 1614 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHL----L---LELENSIE 1614 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHH----H---HHHHHHHH
Confidence 4555555554 333333222221 1123333333211110 012222222111 1 11111111
Q ss_pred HhhCCCCch------HHHHHHHHHHhhcCCHHHHHHHHHhC------C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040576 480 RIYKIEPKV------EHYGCMVDLLGRAGLMRDSEELVSKL------P---MEAGPALWGALLSACSTHSNSELGKIVAQ 544 (641)
Q Consensus 480 ~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~------~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 544 (641)
...+..++. ..|..-+..-....+..+-+-.+++. . ...-..+|......++..|.++.|...+-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 112233331 12222111111111122222222221 1 11224578888888999999999999998
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 040576 545 HLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKEL 585 (641)
Q Consensus 545 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 585 (641)
.+.+..+ +..+...+..+...|+...|+.++++..+.+.
T Consensus 1695 ~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1695 NAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 8888774 45799999999999999999999999876554
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.87 E-value=1.4 Score=37.56 Aligned_cols=70 Identities=19% Similarity=0.060 Sum_probs=32.4
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 040576 500 RAGLMRDSEELVSKL-PMEAGPALWGA-LLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGK 569 (641)
Q Consensus 500 ~~g~~~~A~~~~~~~-~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 569 (641)
+.++.+++..++..+ ...|....... -...+...|++.+|..+++.+.+-.|..+..-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 445555555555554 12333322221 11224455555555555555555555554444444444444443
No 286
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.80 E-value=21 Score=40.53 Aligned_cols=154 Identities=11% Similarity=0.085 Sum_probs=89.3
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhhccHHHHHHHH
Q 040576 400 GVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVL----SACTHAGMVLEGWWYF 475 (641)
Q Consensus 400 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll----~~~~~~g~~~~a~~~~ 475 (641)
|++++|+.-+.++. ...|.-.+..--++|-+++|+.++ +|+...+..+. .-|...+.+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555555555543 122333333334455555555554 45555444443 3444566677776666
Q ss_pred HHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 476 DLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPAL--WGALLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 476 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
+..-+ ...-+.+|..+|+|.+|+.+-.++....+... -..|..-+...+++-+|-.+......
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----- 1027 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----- 1027 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-----
Confidence 65533 12235677788888888888887753333332 25677778888877777666654432
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 554 PGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
-...-...|+++..|++|+++.....
T Consensus 1028 --d~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1028 --DPEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred --CHHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 12334556777888999988877664
No 287
>PRK09687 putative lyase; Provisional
Probab=92.72 E-value=9.8 Score=36.57 Aligned_cols=25 Identities=12% Similarity=-0.003 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELEP 551 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~p 551 (641)
.+.++...|+. +|...+..+.+.+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 33344444442 34444444444333
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.32 E-value=0.29 Score=29.20 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040576 522 LWGALLSACSTHSNSELGKIVAQHLMELEPR 552 (641)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 552 (641)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666677777777777777777777664
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.25 E-value=3.3 Score=40.04 Aligned_cols=63 Identities=11% Similarity=0.164 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhhcc--HHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 040576 433 GEKALEMFMEMEKRGPTPNDA--TFICVLSACTHAGM--VLEGWWYFDLMQRIYKIEPKVEHYGCMVD 496 (641)
Q Consensus 433 ~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 496 (641)
.+.++.+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+ .|+++...+|..+.-
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHH
Confidence 356677888888878766543 33334433322222 4577888888888 788888777765543
No 290
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=8.8 Score=34.87 Aligned_cols=93 Identities=4% Similarity=-0.069 Sum_probs=50.4
Q ss_pred HHHHHHhhc-CCHHHHHHHHHhCC-----CCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCCc-------h
Q 040576 493 CMVDLLGRA-GLMRDSEELVSKLP-----MEAGPALWGALLSA---CSTHSNSELGKIVAQHLMELEPRDPG-------P 556 (641)
Q Consensus 493 ~li~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~p~~~~-------~ 556 (641)
.+...|... .+++.|+..|+... .+.+...-.+++.+ -...+++.+|+.+|+++..-.-+|+- .
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344444433 55666666666551 22223333344443 35678899999999988765544432 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 040576 557 YVLLSNIYASEGKWDEVENLRRIMKEKEL 585 (641)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 585 (641)
+..-+.++.-.++.-.+...+++..+..+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 22233333444566666666776654433
No 291
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.18 E-value=0.32 Score=41.36 Aligned_cols=85 Identities=11% Similarity=-0.037 Sum_probs=58.4
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHH
Q 040576 162 LLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGF 241 (641)
Q Consensus 162 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 241 (641)
.++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..|-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566666777888888888888776666778888888888888877888887774332 333456666677777777
Q ss_pred HHHHHhhC
Q 040576 242 ARELFDFM 249 (641)
Q Consensus 242 A~~~~~~m 249 (641)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77666665
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.14 E-value=4.7 Score=34.92 Aligned_cols=117 Identities=8% Similarity=-0.020 Sum_probs=56.5
Q ss_pred HHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhcCCCCCee
Q 040576 147 KMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCG--EVLDARKVFEDGPVWDLV 224 (641)
Q Consensus 147 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~ 224 (641)
.+.+.+++|+...+..++..+.+.|.+..-. .+...++-+|.......+-.+.... -..-|.+++.++. .
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~ 90 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----T 90 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----h
Confidence 4555666666667777777777666654333 2334444444443332222121110 0222233333322 2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChH
Q 040576 225 TWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDME 271 (641)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~ 271 (641)
.+..++..+...|++-+|+++.+....-+......++.+..+.+|..
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQ 137 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHH
Confidence 34455566666666666666666553333444444555555554443
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.04 E-value=3.3 Score=35.53 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=9.3
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 040576 326 YVRCKDYCECLRLFDRMIR 344 (641)
Q Consensus 326 ~~~~g~~~~A~~~~~~m~~ 344 (641)
..+.|+...|...|++.-.
T Consensus 104 ~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HhhcccHHHHHHHHHHHhc
Confidence 3444555555555555444
No 294
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.92 E-value=9.6 Score=34.65 Aligned_cols=58 Identities=10% Similarity=0.202 Sum_probs=34.6
Q ss_pred HhhcCCHHHHHHHHHhC---CCCCCHHHHH---HHHHH--HHhc-CCHHHHHHHHHHHHhcCCCCCc
Q 040576 498 LGRAGLMRDSEELVSKL---PMEAGPALWG---ALLSA--CSTH-SNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 498 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~---~l~~~--~~~~-g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
-+..|++.+|+++|++. ....+..-|. -++.+ |.-. .|.-.+...+++..+++|.-..
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 44667788888888776 1222222222 12221 3333 6777788888888888887543
No 295
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.92 E-value=1.9 Score=35.25 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC-CCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceE
Q 040576 518 AGPALWGALLSACSTHS---NSELGKIVAQHLME-LEPR-DPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSS 592 (641)
Q Consensus 518 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 592 (641)
++..+--.+.+++.+.. ++++++.+++.+.+ -.|. .....+.|+-.+.+.|+|+.++++.+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l------------ 97 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL------------ 97 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH------------
Confidence 44444444555555443 46677777777776 2232 2345566777788888888888888877
Q ss_pred EEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhh
Q 040576 593 LVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMC 630 (641)
Q Consensus 593 ~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~ 630 (641)
.+.+|++.+ ...+=..+.+++++.
T Consensus 98 ------------l~~e~~n~Q--a~~Lk~~ied~itke 121 (149)
T KOG3364|consen 98 ------------LETEPNNRQ--ALELKETIEDKITKE 121 (149)
T ss_pred ------------HhhCCCcHH--HHHHHHHHHHHHhhc
Confidence 566777777 666666666666543
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.74 E-value=0.86 Score=43.02 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 522 LWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
++..++..+...|+.+.+...++++++.+|-+...|..+..+|.+.|+...|+..++++..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445666667777777777778888888887777788888888888888888777777654
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.72 E-value=8.2 Score=33.45 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeH
Q 040576 178 KVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVT 225 (641)
Q Consensus 178 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 225 (641)
+....+.+.|+.|+...+..+|+.+.+.|++..-..++.-..-+|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~ 62 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKP 62 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHH
Confidence 455556677888999999999999999999888888887655444443
No 298
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.71 E-value=23 Score=38.96 Aligned_cols=193 Identities=11% Similarity=0.075 Sum_probs=89.7
Q ss_pred hcCCHHHHHHHHhhcCC----CCh-------hHHHHHHH-HHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 040576 398 KCGVMDLARNVFDNMTE----KNV-------VSWNSMIM-GYGMHGQGEKALEMFMEMEKR----GPTPNDATFICVLSA 461 (641)
Q Consensus 398 ~~g~~~~A~~~~~~~~~----~~~-------~~~~~li~-~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~ 461 (641)
...++++|..+..+... ++. ..|+++-. .....|++++|+++-+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 34566666666655431 211 13444422 223456777777776665543 122233344555555
Q ss_pred HHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHH-----HHHhhcCCHHHH--HHHHHhC-----CCCCC----HHHHHH
Q 040576 462 CTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMV-----DLLGRAGLMRDS--EELVSKL-----PMEAG----PALWGA 525 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A--~~~~~~~-----~~~~~----~~~~~~ 525 (641)
..-.|++++|..+.....+ ..-.-+...+..+. ..+...|+...| +..|... +.+|- ..+...
T Consensus 507 ~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 507 AHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 5566777777777666554 21222333322221 224455532222 2222221 11121 123333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC----CCCC---chHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEE
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELE----PRDP---GPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLV 594 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~----p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 594 (641)
++.++.+ .+.+..-....++.. |... ..+..|+.++...|+.++|...+.++........+...|.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 3333333 344444333333322 2211 1223567777778888888877777765544443333333
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.71 E-value=7.2 Score=33.34 Aligned_cols=108 Identities=16% Similarity=0.099 Sum_probs=57.3
Q ss_pred HHhhccHHHHHHHHHHhHHhhCCCCchHH-HHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh-cCCHHH
Q 040576 462 CTHAGMVLEGWWYFDLMQRIYKIEPKVEH-YGCMVDLLGRAGLMRDSEELVSKLP-MEAGPALWGALLSACST-HSNSEL 538 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~-~g~~~~ 538 (641)
-.+.++.+++..++..+.. +.|.... -..-...+.+.|++.+|+.+|+++. ..|....-..|+..|.. .||.+
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~- 95 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS- 95 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-
Confidence 3456788888888888866 5555222 2223445678888888888888873 23444444555555543 34432
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHH
Q 040576 539 GKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVEN 575 (641)
Q Consensus 539 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 575 (641)
=....+.+++.+++ +. -..|+..+....+...|..
T Consensus 96 Wr~~A~evle~~~d-~~-a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 96 WRRYADEVLESGAD-PD-ARALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHhcCCC-hH-HHHHHHHHHHhccccchhh
Confidence 22333444444432 22 2334444444444444433
No 300
>PRK10941 hypothetical protein; Provisional
Probab=91.54 E-value=2 Score=40.77 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 523 WGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
.+.+-.+|.+.++++.|..+.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34555678999999999999999999999999888889999999999999999999883
No 301
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.52 E-value=14 Score=35.62 Aligned_cols=18 Identities=6% Similarity=-0.176 Sum_probs=11.5
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 040576 530 CSTHSNSELGKIVAQHLM 547 (641)
Q Consensus 530 ~~~~g~~~~a~~~~~~~~ 547 (641)
+.+.++++.|...|+-+.
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 456677777777766443
No 302
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.51 E-value=18 Score=36.97 Aligned_cols=176 Identities=13% Similarity=0.101 Sum_probs=114.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040576 383 KPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE--KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLS 460 (641)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 460 (641)
..|.....++++.+....++.-...+..+|.. .+-..|..++.+|... ..++-..+|+++.+..+ |...+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 34555566777888887788888888887774 5667888888888887 55778888888888543 4444444444
Q ss_pred HHHhhccHHHHHHHHHHhHHhhCCCCc------hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHH
Q 040576 461 ACTHAGMVLEGWWYFDLMQRIYKIEPK------VEHYGCMVDLLGRAGLMRDSEELVSKLP----MEAGPALWGALLSAC 530 (641)
Q Consensus 461 ~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~ 530 (641)
.+...++...+..+|.++.. .+.|. .+.|..++... ..+.+.-..+..++. ...-...+..+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44455888888888888875 33342 23455444322 334555555555542 223344555555667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 531 STHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
....++.+|++++..+++.+..|..+-..++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 88888899999888888877776655555554443
No 303
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.40 E-value=0.59 Score=44.39 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=18.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 040576 527 LSACSTHSNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
+.+-...|+.++|..-++.+++++|++.+
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 33344456677777777777777777543
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.20 E-value=1.5 Score=36.58 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 533 HSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 533 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
.++.+.++.+++.+.-+.|+.+..-..-++++...|+|++|++++++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555555555555555555555555555555555555555443
No 305
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.58 E-value=0.51 Score=28.75 Aligned_cols=27 Identities=7% Similarity=-0.042 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 522 LWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
+|..|...|...|++++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777888888888888887554
No 306
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.46 E-value=0.32 Score=28.73 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 556 PYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
++..++.+|.+.|++++|.+.++++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999999554
No 307
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.27 E-value=31 Score=37.55 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=43.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCH--HHHHHHHHHH-HhcCC-----------HHHHHHHHHHHHh-------cCCC
Q 040576 494 MVDLLGRAGLMRDSEELVSKLPMEAGP--ALWGALLSAC-STHSN-----------SELGKIVAQHLME-------LEPR 552 (641)
Q Consensus 494 li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~l~~~~-~~~g~-----------~~~a~~~~~~~~~-------~~p~ 552 (641)
...-+...|++++|+.+|.-... .+. ...+.++.-. ..... ...|..+.+.... ..+.
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~-~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 498 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEE-YDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK 498 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence 34456677888888888877751 221 1233333322 22222 3344444443322 1122
Q ss_pred CCchHHHHHHH-----HHhcCChHHHHHHHHHh
Q 040576 553 DPGPYVLLSNI-----YASEGKWDEVENLRRIM 580 (641)
Q Consensus 553 ~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m 580 (641)
+..++..|..+ +...|+|++|++.++++
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 23344444433 66899999999999887
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.25 E-value=15 Score=34.02 Aligned_cols=239 Identities=13% Similarity=0.163 Sum_probs=135.8
Q ss_pred CChHHHHHHHHhcCC--CCc-----chHHHHHHHHHHcCChHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHHccCC
Q 040576 299 GNVTSARNCFDRMCM--RNV-----VSWNILLALYVRCKDYCECLRLFDRMIR---GDA--KPNEASLMSVLTACANMGV 366 (641)
Q Consensus 299 ~~~~~A~~~~~~~~~--~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~~~~~ll~~~~~~g~ 366 (641)
..+++|+.-|.++.+ +.- ...-.+|..+.+.|++++.+..+++|.. ..+ .-+....++++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456666666666522 111 2334577788888888888888877753 112 1234566777777776667
Q ss_pred HHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC------------C---ChhHHHHHHHH
Q 040576 367 IDIGQWIHSYIQKC-----RIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE------------K---NVVSWNSMIMG 426 (641)
Q Consensus 367 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~---~~~~~~~li~~ 426 (641)
.+....+++.-.+. +-..=..+-+.|...|...|.+.+..+++.++.. + -...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66666665543321 1011112334567778888888888887777652 1 12467777888
Q ss_pred HHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH-----HhhccHHHHHHHHHHhHHhhCCC--Cc---hHHHHHHH
Q 040576 427 YGMHGQGEKALEMFMEMEKRG-PTPNDATFICVLSAC-----THAGMVLEGWWYFDLMQRIYKIE--PK---VEHYGCMV 495 (641)
Q Consensus 427 ~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~--p~---~~~~~~li 495 (641)
|..+++-.+-..+|++...-. --|.+... .+|+-| .+.|.+++|..-|=++-+.+.-. |. ..-|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888888888888776532 23444433 455554 35678887765443333323221 22 23355667
Q ss_pred HHHhhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040576 496 DLLGRAGL----MRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVA 543 (641)
Q Consensus 496 ~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (641)
+++.+.|- -.+|. -....|.......|+.+|... ++.+-+.++
T Consensus 280 NMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred HHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 77777661 12211 012335555677888887654 444444443
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.17 E-value=21 Score=35.57 Aligned_cols=54 Identities=11% Similarity=0.014 Sum_probs=33.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 040576 322 LLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQK 379 (641)
Q Consensus 322 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 379 (641)
...+.-+.|+|+...+........ .++...+..+... +.++.+++..+.+....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356677888998855555444322 2344444444432 77888888887776655
No 310
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.16 E-value=13 Score=35.02 Aligned_cols=57 Identities=12% Similarity=-0.018 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 525 ALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 525 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
-....|..+|.+.+|.++.++++.++|-+...+..|...|+..|+--+|.+-++++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344568999999999999999999999999999999999999999888888888874
No 311
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.01 E-value=30 Score=37.09 Aligned_cols=211 Identities=10% Similarity=0.027 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhhcCC-CChhHHHHHHHHHH----HcCChHHHHHH
Q 040576 366 VIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAK-CGVMDLARNVFDNMTE-KNVVSWNSMIMGYG----MHGQGEKALEM 439 (641)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~----~~~~~~~A~~~ 439 (641)
+.+.|..++...-+.|. |+....-..+..... ..+...|.++|..... -.+.++-.+..+|. ...+...|..+
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 34455555555555552 222222111111111 1245566666665543 22233322222222 23456777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHH---hh----cCCHHHHHHHHH
Q 040576 440 FMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLL---GR----AGLMRDSEELVS 512 (641)
Q Consensus 440 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~----~g~~~~A~~~~~ 512 (641)
+++..+.| .|...--...+..+.. +.++.+.-.+..+.. .|..-....-..+.... .. ..+.+.+...+.
T Consensus 387 ~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 387 YKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHH
Confidence 77777766 3332222223333333 555555555555544 33322111111111111 11 224566666666
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-C--ChHHHHHHHHHhhhC
Q 040576 513 KLPMEAGPALWGALLSACST----HSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASE-G--KWDEVENLRRIMKEK 583 (641)
Q Consensus 513 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~~ 583 (641)
+...+.+......+...|.. ..+++.|...+.++.+.. +.....++..+... | .+..|.+++++..+.
T Consensus 464 ~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 464 RAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 66545555555555555432 235777888887777665 55666677666532 1 267788888777543
No 312
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.92 E-value=4 Score=36.50 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=48.0
Q ss_pred hccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 040576 465 AGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPA-LWGALLSACSTHSNSELGKI 541 (641)
Q Consensus 465 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~ 541 (641)
.|.+.-|+-=|..... +.|+ +.+||.|.--+...|+++.|.+.|+.. ...|... +...-.-++.--|+++.|.+
T Consensus 78 lGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 3444455544555443 4555 456666666666677777777777665 3333321 22222223344566777777
Q ss_pred HHHHHHhcCCCCC
Q 040576 542 VAQHLMELEPRDP 554 (641)
Q Consensus 542 ~~~~~~~~~p~~~ 554 (641)
-+.+....+|+||
T Consensus 155 d~~~fYQ~D~~DP 167 (297)
T COG4785 155 DLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHhcCCCCh
Confidence 6666666666665
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.86 E-value=7.2 Score=34.45 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 040576 318 SWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEA--SLMSVLTACANMGVIDIGQWIHSYIQK 379 (641)
Q Consensus 318 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~ 379 (641)
.+..+...|.+.|+.++|++.|.++.+....+... .+..++..+...+++..+......+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666777777777777777777776654444332 345566666666677766666655543
No 314
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.16 E-value=15 Score=32.44 Aligned_cols=127 Identities=8% Similarity=-0.040 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHH-----H
Q 040576 420 WNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFIC--VLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHY-----G 492 (641)
Q Consensus 420 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~ 492 (641)
|..++.+.. .+.. +.....+++......-....+.. +...+...|++++|...++.... . |....+ -
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~-t~De~lk~l~~l 130 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---Q-TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---c-chhHHHHHHHHH
Confidence 444444432 3333 45555566665422211122222 33456778888888888887664 1 222222 3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 493 CMVDLLGRAGLMRDSEELVSKLPMEAGPAL--WGALLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 493 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
.|.......|.+++|+..++... .++-.. ...-...+...|+-++|...|+++++.++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 45567788899999999888874 233222 2333445888889999999999888877443
No 315
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.06 E-value=22 Score=34.21 Aligned_cols=113 Identities=12% Similarity=0.012 Sum_probs=53.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHhcCCHHHH
Q 040576 329 CKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKC---RIKPDVLLSTSLLTMYAKCGVMDLA 405 (641)
Q Consensus 329 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 405 (641)
.|++.+|-..++++.+. .+.|...+...=.+|...|+.+.-...++.+... +++...++-..+.-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34455555555555442 3444444444455555555555555555555432 1121222222333344455666666
Q ss_pred HHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 040576 406 RNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFME 442 (641)
Q Consensus 406 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~ 442 (641)
++.-++..+ .|.-+-.+....+-..|+..++.++..+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 666555543 2223334444555555666666555443
No 316
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.88 E-value=6.5 Score=35.88 Aligned_cols=54 Identities=7% Similarity=-0.076 Sum_probs=47.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 527 LSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
..++...|++-++++....++...|.|..+|+.-+.+.+..=+.++|..-+...
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 345567788999999999999999999999999999999998999999999888
No 317
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.88 E-value=0.58 Score=26.02 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=19.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 040576 555 GPYVLLSNIYASEGKWDEVENLRR 578 (641)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~ 578 (641)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888888775
No 318
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.71 E-value=71 Score=39.57 Aligned_cols=308 Identities=12% Similarity=0.048 Sum_probs=157.3
Q ss_pred HHHHHHHhCCChHHHHHHHhhC----CCCC--chhHHHHHHHHhcCCChHHHHHHHhh-cCCCCchHHHHHHHHHHhcCC
Q 040576 228 SMIDGYVKNREVGFARELFDFM----PERD--IFTWNSMISGYVDVGDMEAANGLFDL-MPFRDVVSWNCMIDGYAKIGN 300 (641)
Q Consensus 228 ~li~~~~~~g~~~~A~~~~~~m----~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~ 300 (641)
.+..+-.+.+.+.+|+..+++- .+.+ ..-|..+...|+..+++|...-+... ...+ . ....+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--s-l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP--S-LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc--c-HHHHHHHHHhhcc
Confidence 4445666788899999999883 2222 23444555588888888887766663 2222 2 2334455677899
Q ss_pred hHHHHHHHHhcCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHH
Q 040576 301 VTSARNCFDRMCM--R-NVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMS-VLTACANMGVIDIGQWIHSY 376 (641)
Q Consensus 301 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~ 376 (641)
++.|...|+.+.. | ...+++-++......|.++.++...+-.... ..+....++. -+.+--+.+++|.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 9999999999954 3 3567888888888888888877755544432 2222223322 2334456777777776655
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHH--HHHHHHhhcC----C-------CC--hhHHHHHHHHHHHcCChHHHHHHHH
Q 040576 377 IQKCRIKPDVLLSTSLLTMYAKCGVMD--LARNVFDNMT----E-------KN--VVSWNSMIMGYGMHGQGEKALEMFM 441 (641)
Q Consensus 377 ~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~----~-------~~--~~~~~~li~~~~~~~~~~~A~~~~~ 441 (641)
...+-...+. .++....+..+-| .-.+..+.+. + .. ...|..++....-..--....
T Consensus 1543 -~~n~e~w~~~---~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~---- 1614 (2382)
T KOG0890|consen 1543 -DRNIEYWSVE---SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIE---- 1614 (2382)
T ss_pred -cccccchhHH---HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH----
Confidence 1111111111 1222222211110 0001111111 0 00 123333333322111101000
Q ss_pred HHHHCCCCCCHHH------HHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-----hHHHHHHHHHHhhcCCHHHHHHH
Q 040576 442 EMEKRGPTPNDAT------FICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-----VEHYGCMVDLLGRAGLMRDSEEL 510 (641)
Q Consensus 442 ~m~~~g~~p~~~~------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~ 510 (641)
.. .+..++..+ |..-+.--....+..+-+-.+++..-.....|+ ...|....+..-+.|+++.|...
T Consensus 1615 ~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1615 EL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred Hh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 00 112222211 111111111111112211122221110111222 46677777777789999999987
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040576 511 VSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 511 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
+-.+....-+..+.-...-.-..|+...|..+++..+++.
T Consensus 1693 ll~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 7665322344455556666788999999999999998754
No 319
>PRK09687 putative lyase; Provisional
Probab=88.62 E-value=24 Score=33.95 Aligned_cols=85 Identities=9% Similarity=-0.035 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 435 KALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 435 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
.+...+..+.. .++...-...+.++.+.|+. .+...+-...+ . ++ .....+.+++..|.. +|+..+..+
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELK-K---GT--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHc-C---Cc--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 44444444442 23444444455555555542 33333333332 1 11 122344555555553 455544444
Q ss_pred C-CCCCHHHHHHHHHHH
Q 040576 515 P-MEAGPALWGALLSAC 530 (641)
Q Consensus 515 ~-~~~~~~~~~~l~~~~ 530 (641)
- ..||..+-...+.+|
T Consensus 261 ~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 261 LYKFDDNEIITKAIDKL 277 (280)
T ss_pred HhhCCChhHHHHHHHHH
Confidence 2 234444444444443
No 320
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.27 E-value=33 Score=35.19 Aligned_cols=49 Identities=2% Similarity=-0.222 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 466 GMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 466 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
.+.+....+...+.+..|...-...+.-+-.-|....++.+|++++..+
T Consensus 183 dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 183 DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 3444444444455444444444444444445555555566666555543
No 321
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.78 E-value=6.1 Score=37.44 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 040576 388 LSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEME 444 (641)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 444 (641)
++..++..+..+|+.+.+...++++.. -+...|..++.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344444455555555555544444442 233345555555555555555555444443
No 322
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.57 E-value=12 Score=36.31 Aligned_cols=127 Identities=15% Similarity=0.234 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCH
Q 040576 332 YCECLRLFDRMIRGDAKPNEASLMSVLTACAN--MG----VIDIGQWIHSYIQKCRI---KPDVLLSTSLLTMYAKCGVM 402 (641)
Q Consensus 332 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 402 (641)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....+..+|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566778888888888888777664433333 22 34567888899988653 2334444444333 33333
Q ss_pred ----HHHHHHHhhcCC-----CChhHHHHHHHHHHHc-CC--hHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040576 403 ----DLARNVFDNMTE-----KNVVSWNSMIMGYGMH-GQ--GEKALEMFMEMEKRGPTPNDATFICVLS 460 (641)
Q Consensus 403 ----~~A~~~~~~~~~-----~~~~~~~~li~~~~~~-~~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 460 (641)
+.++.+|+.+.+ .|..-+.+-+-++... .. ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 345555555543 2333333333333222 12 4578899999999999988777665543
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.79 E-value=6.1 Score=30.60 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 040576 435 KALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVD 496 (641)
Q Consensus 435 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 496 (641)
+..+-++.+....+.|++......+.+|.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455556666667889999999999999999999999999999998755533 336766654
No 324
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.59 E-value=31 Score=33.13 Aligned_cols=160 Identities=11% Similarity=-0.023 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhC-CCCchHHHHHH
Q 040576 419 SWNSMIMGYGMHGQGE---KALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYK-IEPKVEHYGCM 494 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l 494 (641)
+...++.+|...+..+ +|..+++.+...... .+..+..-+..+.+.++.+++.+.+.+|..... ...+....-..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 5566777777766644 455566666544222 234454556666667888888888888877322 11222222222
Q ss_pred HHHHhhcCCHHHHHHHHHhC---CCCCCHH-HHH-HHHH---HHHhcCC------HHHHHHHHHHHHhc--CCCCCch--
Q 040576 495 VDLLGRAGLMRDSEELVSKL---PMEAGPA-LWG-ALLS---ACSTHSN------SELGKIVAQHLMEL--EPRDPGP-- 556 (641)
Q Consensus 495 i~~~~~~g~~~~A~~~~~~~---~~~~~~~-~~~-~l~~---~~~~~g~------~~~a~~~~~~~~~~--~p~~~~~-- 556 (641)
+.-+.... ...|...+..+ ...|... ... .++. .....++ ++....+++.+.+. .|-++.+
T Consensus 165 i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 22223322 23444444433 1223322 111 1111 1122222 34444444433321 1222221
Q ss_pred -----HHHHHHHHHhcCChHHHHHHHHHh
Q 040576 557 -----YVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 557 -----~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
.-.-+..+.++++|++|.++++-.
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 222355577899999999999854
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.18 E-value=1.3 Score=27.81 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 556 PYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
++..|+.+|...|++++|..++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 577899999999999999999988754
No 326
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.06 E-value=1.1 Score=26.90 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSE 508 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~ 508 (641)
...|..+...|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 556666666666666666654
No 327
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.94 E-value=44 Score=34.25 Aligned_cols=87 Identities=11% Similarity=0.108 Sum_probs=38.0
Q ss_pred HHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHH---HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 040576 458 VLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDL---LGRAGLMRDSEELVSKL--PMEAGPALWGALLSACST 532 (641)
Q Consensus 458 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~ 532 (641)
++.-+.+.|-+.+|...+..+.. --+|+...|..+|.. ...+| +.-+.++|+.| ....++..|...+.--..
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELP 542 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhcc
Confidence 34444445555555555555544 122334444444432 11222 44444444444 122444455544444445
Q ss_pred cCCHHHHHHHHHHHH
Q 040576 533 HSNSELGKIVAQHLM 547 (641)
Q Consensus 533 ~g~~~~a~~~~~~~~ 547 (641)
+|..+.+-.++.++.
T Consensus 543 ~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 543 LGRPENCGQIYWRAM 557 (568)
T ss_pred CCCcccccHHHHHHH
Confidence 555544444444443
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.68 E-value=8.2 Score=29.57 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 040576 432 QGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVD 496 (641)
Q Consensus 432 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 496 (641)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34455666677777788999999999999999999999999999988763443 4445665553
No 329
>PRK12798 chemotaxis protein; Reviewed
Probab=85.65 E-value=42 Score=33.71 Aligned_cols=205 Identities=14% Similarity=0.148 Sum_probs=137.0
Q ss_pred cCCHHHHHHHHhhcCC----CChhHHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhhccHH
Q 040576 399 CGVMDLARNVFDNMTE----KNVVSWNSMIMG-YGMHGQGEKALEMFMEMEKRGPTPND----ATFICVLSACTHAGMVL 469 (641)
Q Consensus 399 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~ 469 (641)
.|+..+|.+.+..+.. +....|-.|+.+ .....+..+|+.+|+...-. -|.. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5899999999988874 445567777765 44567899999999987753 3432 23344455667889999
Q ss_pred HHHHHHHHhHHhhCCCCchHHH-HHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040576 470 EGWWYFDLMQRIYKIEPKVEHY-GCMVDLLGRAG---LMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQH 545 (641)
Q Consensus 470 ~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 545 (641)
++..+-..-...+...|=...| ..+..++.+.+ ..+.-.+++..|.-.-....|..+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8887766665534444433222 23333444333 4556666777775334466888888888999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHH-----hcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHH
Q 040576 546 LMELEPRDPGPYVLLSNIYA-----SEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSML 620 (641)
Q Consensus 546 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l 620 (641)
+..+...+ ..-...+..|. -..+.++|.+.++.+-. .++.|.|.. +.+.-
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~----------------------~~L~~~Dr~--Ll~AA 337 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDR----------------------DKLSERDRA--LLEAA 337 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCCh----------------------hhCChhhHH--HHHHH
Confidence 99887432 23333333433 45678889988888743 577888888 66666
Q ss_pred HHHHHHHHhh
Q 040576 621 GEIGAQMKMC 630 (641)
Q Consensus 621 ~~l~~~~~~~ 630 (641)
..+..++.+.
T Consensus 338 ~~va~~V~~~ 347 (421)
T PRK12798 338 RSVARQVRRA 347 (421)
T ss_pred HHHHHHHhcC
Confidence 6666666554
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.44 E-value=1.8 Score=25.27 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 524 GALLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 524 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
-.+..++...|+.++|...++++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 345666778888888888888888888864
No 331
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.34 E-value=61 Score=35.32 Aligned_cols=48 Identities=17% Similarity=-0.025 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCC
Q 040576 122 FMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIR 171 (641)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 171 (641)
..--++|--|.+.|++++|.++.. .... ........|...++.+....
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~-~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVAN-ENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHH-HTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHH-Hhhh-hhcchhHHHHHHHHHHHhCC
Confidence 334467778889999999999985 3433 35666778888888887653
No 332
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.02 E-value=1.6 Score=43.86 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=53.6
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHH
Q 040576 497 LLGRAGLMRDSEELVSKL-PMEAGPALW-GALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVE 574 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 574 (641)
-+...+.++.|+.++.++ ...|+-..| ..-..++.+.+++..|+.-+.++++++|.....|..-+.++.+.+.+.+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 344455666666666655 344543333 222255667777777777777777777777777777777777777777777
Q ss_pred HHHHHh
Q 040576 575 NLRRIM 580 (641)
Q Consensus 575 ~~~~~m 580 (641)
..++..
T Consensus 93 ~~l~~~ 98 (476)
T KOG0376|consen 93 LDLEKV 98 (476)
T ss_pred HHHHHh
Confidence 777665
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.91 E-value=1.7 Score=25.80 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 555 GPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
..|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688999999999999999999999854
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.86 E-value=30 Score=31.29 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc----hHHHHHH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK----VEHYGCM 494 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 494 (641)
+.+..++.+.+.+...+|+...++-.+.... |..+-..++..++-.|+|++|..-++.... +.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 3455677788889999999998887776322 445666788899999999999988887765 4444 5566666
Q ss_pred HHHHhhcCCHHHHH-HHHHhC--C---CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCc
Q 040576 495 VDLLGRAGLMRDSE-ELVSKL--P---MEAGPALWGALLSACS--THSNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 495 i~~~~~~g~~~~A~-~~~~~~--~---~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
|.+- .+. ++|..- | ..|.+.-...++.+.. .-|.-+.+..+-+.+++..|..+.
T Consensus 79 ir~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 79 IRCE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 6542 222 234322 2 2244444445555533 333455566666777777666543
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.74 E-value=2.4 Score=26.44 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 521 ALWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3456666666667777777777666654
No 336
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.56 E-value=52 Score=36.85 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 318 SWNILLALYVRCKDYCECLRLFDRMIR 344 (641)
Q Consensus 318 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 344 (641)
.|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 377778888888888888888887765
No 337
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.47 E-value=5.8 Score=30.35 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 540 KIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
...++..++.+|+|......++..+...|++++|++.+-.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556677778888888888888888888888888888887744
No 338
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.28 E-value=24 Score=36.88 Aligned_cols=150 Identities=17% Similarity=0.117 Sum_probs=93.3
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Q 040576 398 KCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDL 477 (641)
Q Consensus 398 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 477 (641)
-.|+++.|..++..++++ .-+.++.-+.++|-.++|+++- ..|+. -|. ...+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rFe----lal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQ-RFE----LALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhh-hhh----hhhhcCcHHHHHHHHHh
Confidence 456777777766666632 2334455555666666665532 22222 222 23456888888776655
Q ss_pred hHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 040576 478 MQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPY 557 (641)
Q Consensus 478 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 557 (641)
.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+-..+.+.+..|
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N---- 725 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN---- 725 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc----
Confidence 42 35568888888888888888888888764 25556666677777665555555555444443
Q ss_pred HHHHHHHHhcCChHHHHHHHHHh
Q 040576 558 VLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
.-..+|...|++++..+++..-
T Consensus 726 -~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 -LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -hHHHHHHHcCCHHHHHHHHHhc
Confidence 3445667788888888887654
No 339
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.24 E-value=51 Score=35.40 Aligned_cols=15 Identities=7% Similarity=-0.243 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHcC
Q 040576 367 IDIGQWIHSYIQKCR 381 (641)
Q Consensus 367 ~~~a~~~~~~~~~~~ 381 (641)
...+..+++...+.|
T Consensus 228 ~~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG 242 (552)
T ss_pred hhHHHHHHHHHHhhc
Confidence 455666666666655
No 340
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.97 E-value=70 Score=34.90 Aligned_cols=157 Identities=13% Similarity=0.105 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCChHHHHHhhhcC----CCCCcc-----cHHHHHHHHHcCCCchhHHHHHHHHHHhc----CCCCCc
Q 040576 91 AASRVLKKLCTSLSSVSLSVLFFDGI----QEPDAF-----MCNTIMKSFLMLNDPFGALSFYYEKMMAK----FVEHNH 157 (641)
Q Consensus 91 ~~~~ll~~~~~~~~~~~~A~~~~~~~----~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~m~~~----~~~~~~ 157 (641)
+...+..-++....+++.|...+.+. .+++.. .-..+++.+.+.+... |+...+ ...+. +..+-.
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~-~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLD-KAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHH-HHHHHHhccCchhHH
Confidence 33334443344678888888888764 222211 1123455666655555 777777 33322 111222
Q ss_pred chHHHH-HHHHhcCCCchhHHHHHHHHHHhC---CCCChhHHHHHHHHHH--hcCCHHHHHHHHhcC----C--------
Q 040576 158 YTFPLL-GKVCAGIRSLREGKKVHARIVKCG---FELDLFVRNSLIHMYS--VCGEVLDARKVFEDG----P-------- 219 (641)
Q Consensus 158 ~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~----~-------- 219 (641)
..|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+.+++. .
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 333443 222323378888888887766532 2444555555555544 345455555555432 1
Q ss_pred -CCCeeHHHHHHHH--HHhCCChHHHHHHHhhC
Q 040576 220 -VWDLVTWNSMIDG--YVKNREVGFARELFDFM 249 (641)
Q Consensus 220 -~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m 249 (641)
.|-..+|..+++. +...|+++.+...++++
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1223456666554 45667776766666555
No 341
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.62 E-value=4.9 Score=36.54 Aligned_cols=82 Identities=11% Similarity=0.032 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 040576 501 AGLMRDSEELVSKL-PMEAGPA-LWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRR 578 (641)
Q Consensus 501 ~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 578 (641)
..++..|+..|.+. ...|+.. .|..-+-++.+..+++.+..--.+++++.|+.....+.++..+.....+++|+..+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34455666655544 4556653 445555566677788888888888888888888888888888888888888888888
Q ss_pred Hhhh
Q 040576 579 IMKE 582 (641)
Q Consensus 579 ~m~~ 582 (641)
+...
T Consensus 103 ra~s 106 (284)
T KOG4642|consen 103 RAYS 106 (284)
T ss_pred HHHH
Confidence 7743
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.29 E-value=2.2 Score=24.14 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040576 525 ALLSACSTHSNSELGKIVAQHLMELEP 551 (641)
Q Consensus 525 ~l~~~~~~~g~~~~a~~~~~~~~~~~p 551 (641)
.+...+...|+++.|...++.+++..|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 334444444444444444444444443
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.99 E-value=17 Score=36.70 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=90.3
Q ss_pred HHHHHHHcCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhc
Q 040576 423 MIMGYGMHGQGEKALEM-FMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRA 501 (641)
Q Consensus 423 li~~~~~~~~~~~A~~~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 501 (641)
-|.--...|+.-.|-+- +.-++...-.|+..-.... ...+.|+++.+.+.+....+ -+.....+..++++..-+.
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhch
Confidence 34445567777776554 4444444345555544333 34677999999888877765 2344566777888888888
Q ss_pred CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH-HHHHHH-HHhcCC
Q 040576 502 GLMRDSEELVSKL-PM-EAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPY-VLLSNI-YASEGK 569 (641)
Q Consensus 502 g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-~~l~~~-~~~~g~ 569 (641)
|++++|..+-+.| .. -.++.............|-++++...+++++.+.|+....+ +.|... |...|+
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred hhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 9999998888777 21 13344444344445677888899999999988886644333 333322 444443
No 344
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.80 E-value=18 Score=37.71 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=50.2
Q ss_pred HhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040576 296 AKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHS 375 (641)
Q Consensus 296 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 375 (641)
.+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 3455555555554432 2344566666666666666666666655543 3445555555555554444444
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 040576 376 YIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDN 411 (641)
Q Consensus 376 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 411 (641)
...+.|. . |....+|...|+++++.+++.+
T Consensus 717 ~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 717 LAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 4444441 1 1122234445555555555443
No 345
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.42 E-value=13 Score=35.40 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=66.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCh-----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 040576 381 RIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE-KNV-----VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDAT 454 (641)
Q Consensus 381 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 454 (641)
|.+....+...++..-....+++++...+-++.. ++. .+-.+.+..+ -.=++++++.++..=.+-|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 4444555555566666666778888877776653 211 1111222222 23466788888888888899999999
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 455 FICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 455 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
++.+++.+.+.+++.+|..+...|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999888887776655
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.19 E-value=81 Score=34.34 Aligned_cols=147 Identities=10% Similarity=0.073 Sum_probs=81.4
Q ss_pred HhcCCCchhHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHH
Q 040576 167 CAGIRSLREGKKVHARIVKCGFEL---DLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFAR 243 (641)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 243 (641)
+.+.+.+++|..+.+... |..| -..++..+|..+.-.|++++|-...-.|...+..-|...+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 334455555555443322 2233 23466677777777777887777777777777777777777777766665544
Q ss_pred HHHhhCC-CCCchhHHHHHHHHhcCCChHHHHHHHhhcC--------------------CCCchHHHHHHHHHHhcCChH
Q 040576 244 ELFDFMP-ERDIFTWNSMISGYVDVGDMEAANGLFDLMP--------------------FRDVVSWNCMIDGYAKIGNVT 302 (641)
Q Consensus 244 ~~~~~m~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--------------------~~~~~~~~~li~~~~~~~~~~ 302 (641)
.++-.-. .-+...|..++..+.. .+...-.++...-. ..+......|+..|...+++.
T Consensus 444 ~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~ 522 (846)
T KOG2066|consen 444 PYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYE 522 (846)
T ss_pred ccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChH
Confidence 4433321 1344566666666655 22221111111100 011233444777788888888
Q ss_pred HHHHHHHhcCCCCc
Q 040576 303 SARNCFDRMCMRNV 316 (641)
Q Consensus 303 ~A~~~~~~~~~~~~ 316 (641)
+|...+-....+++
T Consensus 523 ~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 523 KALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHhccChHH
Confidence 88887777655443
No 347
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.57 E-value=88 Score=34.28 Aligned_cols=367 Identities=10% Similarity=-0.064 Sum_probs=175.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcC
Q 040576 191 DLFVRNSLIHMYSVCGEVLDARKVFEDG---PVWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDV 267 (641)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~ 267 (641)
+...-.....+....|+.++|.+..... ....+..++.+++.+.+.|.+.... +.. -+......
T Consensus 128 ~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w~------------R~~~al~~ 194 (644)
T PRK11619 128 PVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YLE------------RIRLAMKA 194 (644)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HHH------------HHHHHHHC
Confidence 3444444555555666655444433331 1223455666666666555443322 111 12333455
Q ss_pred CChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHH--HHHcCChHHHHHHHHHHHHC
Q 040576 268 GDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLAL--YVRCKDYCECLRLFDRMIRG 345 (641)
Q Consensus 268 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~ 345 (641)
|+...|..+...+..........++..+.+ ...+..++.... ++...-..++.+ -....+.+.|..++......
T Consensus 195 ~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~ 270 (644)
T PRK11619 195 GNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRA 270 (644)
T ss_pred CCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 666666666555522112222333333322 233333333221 121111111111 22345668888888876443
Q ss_pred C-CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh-hH
Q 040576 346 D-AKPNEA--SLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE--KNV-VS 419 (641)
Q Consensus 346 g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~ 419 (641)
. ..+... ....+.......+..+++...+....... .+......-+..-.+.++++.+...+..|.. .+. .-
T Consensus 271 ~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw 348 (644)
T PRK11619 271 QKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEW 348 (644)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhh
Confidence 2 322222 22223222223222445555554433222 2344445455555578888888888888763 111 11
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHH-HHHHH-HhHHhhCCCCchHHHHHHHHH
Q 040576 420 WNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEG-WWYFD-LMQRIYKIEPKVEHYGCMVDL 497 (641)
Q Consensus 420 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~-~~~~~~~~~p~~~~~~~li~~ 497 (641)
..=+..++...|+.++|...|+++... .+|..++.+ .+.|..-.- ..... .... ....| --.-+..
T Consensus 349 ~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~-~~~~~----~~~ra~~ 416 (644)
T PRK11619 349 RYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRLGEEYPLKIDKAPKPDSA-LTQGP----EMARVRE 416 (644)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHcCCCCCCCCCCCCchhhh-hccCh----HHHHHHH
Confidence 222456666678888888888886431 123333322 112211000 00000 0000 00001 1123455
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCChHHHH
Q 040576 498 LGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELE---PRDPGPYVLLSNIYASEGKWDEVE 574 (641)
Q Consensus 498 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~ 574 (641)
+...|+..+|...+..+....+......+.......|..+.++.........+ -..|..|...+..+.+.-..+.++
T Consensus 417 L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 417 LMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 66788999998888776434566666666666778888888887776543211 122445666777777666677766
Q ss_pred HHHHHhhhCCCccc
Q 040576 575 NLRRIMKEKELEKA 588 (641)
Q Consensus 575 ~~~~~m~~~~~~~~ 588 (641)
-.---..|.+..+.
T Consensus 497 v~ai~rqES~f~p~ 510 (644)
T PRK11619 497 AMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHhcCCCCC
Confidence 54333345555543
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.13 E-value=16 Score=32.97 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=33.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 494 MVDLLGRAGLMRDSEELVSKL-PMEAGPA-LWGALLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 494 li~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
-+..+.+.+.+.+|+...+.- +.+|... .-..++..++-.|++++|..-++-+-++.|++
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344555566666666654432 3344433 33445555666666666666666666666654
No 349
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.08 E-value=1.7 Score=36.90 Aligned_cols=54 Identities=6% Similarity=0.052 Sum_probs=28.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040576 322 LLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHS 375 (641)
Q Consensus 322 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 375 (641)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..+....+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344445555566666666666655444455555666666666655555554444
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.98 E-value=24 Score=27.36 Aligned_cols=86 Identities=13% Similarity=0.139 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040576 367 IDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKR 446 (641)
Q Consensus 367 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 446 (641)
.++|..|-+.+...+-. ...+--+-+..+...|++++|..+.+....||...|-+|-. .+.|-.+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45566666655554421 22222233456678899999999999988899998877654 4567777777778888877
Q ss_pred CCCCCHHHHH
Q 040576 447 GPTPNDATFI 456 (641)
Q Consensus 447 g~~p~~~~~~ 456 (641)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 55555554
No 351
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.33 E-value=1.1 Score=42.93 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=69.2
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 040576 500 RAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLR 577 (641)
Q Consensus 500 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (641)
..|.+++|++.|... +..|. ...+..-.+++.+.+....|++-+..+++++|+....|-.-+.+..-.|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 467788888888776 33343 4455556667888888999999999999999999888888888888899999999999
Q ss_pred HHhhhCCCc
Q 040576 578 RIMKEKELE 586 (641)
Q Consensus 578 ~~m~~~~~~ 586 (641)
....+.+..
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 988776654
No 352
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.19 E-value=13 Score=31.23 Aligned_cols=106 Identities=14% Similarity=0.210 Sum_probs=63.8
Q ss_pred HHHHHHHHHH---HHhhccHHHHHHHHHHhHHhhCCCCc---hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHH
Q 040576 452 DATFICVLSA---CTHAGMVLEGWWYFDLMQRIYKIEPK---VEHYGCMVDLLGRAGLMRDSEELVSKLPMEA-GPALWG 524 (641)
Q Consensus 452 ~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 524 (641)
....+.|+.. -...++.+++..+++.+.- +.|+ ..++. .-.+.+.|++.+|+.+|++....+ ....-.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~k 81 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGK 81 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHH
Confidence 3444555543 3457899999999999976 5555 34444 445778999999999999995443 333334
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 525 ALLSACS-THSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 525 ~l~~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
.|+..|. ..||.+ |...+......|.-.+|..+.+.+.
T Consensus 82 AL~A~CL~al~Dp~-------------------Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 82 ALLALCLNAKGDAE-------------------WHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHhcCChH-------------------HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 4444443 344432 4444444444555555555555553
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.07 E-value=3.3 Score=26.56 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040576 558 VLLSNIYASEGKWDEVENLRRIMKEKE 584 (641)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 584 (641)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 458899999999999999999986543
No 354
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.99 E-value=4.3 Score=27.33 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 040576 525 ALLSACSTHSNSELGKIVAQHLMELEPRDPGP 556 (641)
Q Consensus 525 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 556 (641)
-+.-++.+.|+++.|....+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35567889999999999999999999998643
No 355
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.63 E-value=44 Score=29.68 Aligned_cols=54 Identities=11% Similarity=-0.003 Sum_probs=25.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhH--HHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040576 393 LTMYAKCGVMDLARNVFDNMTEKNVVS--WNSMIMGYGMHGQGEKALEMFMEMEKR 446 (641)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~ 446 (641)
.......|.+|+|+.+++....++-.. ...-.+.+...|+-++|..-|++..+.
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334444555555555555554443222 222234455555555555555555544
No 356
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.44 E-value=63 Score=32.40 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=46.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCChHHHHHHHHHhhh
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELEPR-DPGPYVLLSNIYA-SEGKWDEVENLRRIMKE 582 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 582 (641)
.+..+.+.|-+..|.+..+-++.++|. ||-.-...++.|+ ++++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 344578899999999999999999998 8877777777766 77888888888887654
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.32 E-value=27 Score=27.05 Aligned_cols=59 Identities=15% Similarity=0.243 Sum_probs=37.7
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 040576 293 DGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASL 354 (641)
Q Consensus 293 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 354 (641)
..+...|++++|..+.+.++-||...|-+|-.. +.|..+++..-+..|..+| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345667777777777777777777777665543 5566666666666666655 3444444
No 358
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.59 E-value=26 Score=33.79 Aligned_cols=126 Identities=11% Similarity=-0.028 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 040576 490 HYGCMVDLLGRAGLMRDSEELVSKL----PMEAG--PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNI 563 (641)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 563 (641)
+|--=.+-|.+..++..|.+.|.+- ...|+ ...|+.-..+-...|++..++.-..+++.++|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444456788888999999998875 12233 44566666677788999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHH
Q 040576 564 YASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQM 627 (641)
Q Consensus 564 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~ 627 (641)
+....++++|..+.+....-... ..++.+.....||++.. +..+..++.++-
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~e----------~K~~~~l~~l~~k~~~~--~L~~er~~rK~~ 214 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDDE----------AKKAIELRNLIHKNDKL--KLIEERDVRKKN 214 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHH----------HHHHHHHHhhcCcchHH--HHHHHHHHHHHh
Confidence 99999999998888776332211 11122211235788887 777777666544
No 359
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.22 E-value=17 Score=28.22 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=34.1
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 040576 513 KLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLS 561 (641)
Q Consensus 513 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 561 (641)
.+..-|++.+..+.+.+|++..|+..|.++++.+.....+....|..+.
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3345688999999999999999999999999988776665554666554
No 360
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=78.10 E-value=5 Score=37.81 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=32.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 531 STHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
.+.|+.++|..+|+.++.+.|.++..+..++......++.-+|-+++-+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 45666777777777777777777766666666666666666666666555
No 361
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.06 E-value=13 Score=33.08 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=52.6
Q ss_pred HhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCChH
Q 040576 498 LGRAGLMRDSEELVSKLPMEA--GPALWGALLSACSTHSNSELGKIVAQHLMELEPR----DPGPYVLLSNIYASEGKWD 571 (641)
Q Consensus 498 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 571 (641)
..+.|+ ++|.+.|-.+...| +....-..+.+|....|.++++.++-+++++.+. |+..+..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 345565 66777777663222 2333333444555577899999999999886532 5788999999999999998
Q ss_pred HHH
Q 040576 572 EVE 574 (641)
Q Consensus 572 ~A~ 574 (641)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
No 362
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.51 E-value=67 Score=30.60 Aligned_cols=113 Identities=18% Similarity=0.116 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHHh-cCCCCCcchHHHHHHHHhc-CC-CchhHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcCCHHHH
Q 040576 136 DPFGALSFYYEKMMA-KFVEHNHYTFPLLGKVCAG-IR-SLREGKKVHARIVK-CGFELDLFVRNSLIHMYSVCGEVLDA 211 (641)
Q Consensus 136 ~~~~A~~~~~~~m~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A 211 (641)
.+.+|+.+|+ .... ..+-.|..+...+++.... .+ ....--++.+.+.. .|-.++..+...+|+.+++.+++..-
T Consensus 143 ~Vv~aL~L~~-~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 143 IVVEALKLYD-GLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHhh-ccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 3455666665 2222 2244566666666666554 22 22333344444443 23466777777888888888888888
Q ss_pred HHHHhcC-----CCCCeeHHHHHHHHHHhCCChHHHHHHHhhC
Q 040576 212 RKVFEDG-----PVWDLVTWNSMIDGYVKNREVGFARELFDFM 249 (641)
Q Consensus 212 ~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 249 (641)
.+.++.. +..|...|..+|+.-.+.|+..-...+.++-
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 8887752 3457777888888888888877777776654
No 363
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.37 E-value=8.8 Score=36.46 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=31.0
Q ss_pred CCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 040576 135 NDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKC 186 (641)
Q Consensus 135 g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 186 (641)
-++++++.++. .=...|+-||.+++..+++.+.+.+++.+|..+.-.|...
T Consensus 114 y~pq~~i~~l~-npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 114 YDPQKAIYTLV-NPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cChHHHHHHHh-CcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 35556666655 4455566666666666666666666666666666555543
No 364
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.89 E-value=17 Score=27.97 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 040576 514 LPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLS 561 (641)
Q Consensus 514 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 561 (641)
+..-|++.+..+-+.+|++.+|+..|.++++.+.....++...|..+.
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 345688888888888888888888888888877655444444454443
No 365
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.62 E-value=19 Score=31.51 Aligned_cols=86 Identities=13% Similarity=0.185 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040576 468 VLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHL 546 (641)
Q Consensus 468 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 546 (641)
+++|+.-|+++.. +.|+ ..++.++..+|...+.+ .|+.. .....+++|...|+++
T Consensus 51 iedAisK~eeAL~---I~P~~hdAlw~lGnA~ts~A~l------------~~d~~---------~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 51 IEDAISKFEEALK---INPNKHDALWCLGNAYTSLAFL------------TPDTA---------EAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHHHH---H-TT-HHHHHHHHHHHHHHHHH---------------HH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHhh------------cCChH---------HHHHHHHHHHHHHHHH
Confidence 4445555555554 5666 35666677666554421 11211 0112355677777777
Q ss_pred HhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040576 547 MELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKE 584 (641)
Q Consensus 547 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 584 (641)
...+|+|. .|..-..+.. +|-++..++...+
T Consensus 107 v~~~P~ne-~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 107 VDEDPNNE-LYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHH-TT-H-HHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HhcCCCcH-HHHHHHHHHH------hhHHHHHHHHHHH
Confidence 78888775 4444333332 3555555554443
No 366
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.49 E-value=51 Score=28.67 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchH-HHHHH-
Q 040576 418 VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDA-TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVE-HYGCM- 494 (641)
Q Consensus 418 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l- 494 (641)
..|..-++ +.+.++.++|+.-|..+.+.|...-+. .-........+.|+...|...|+++-.... .|... -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHH
Confidence 34443333 356677888888888888876543222 222233446678888889999988876222 23211 11111
Q ss_pred -HHHHhhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 495 -VDLLGRAGLMRDSEELVSKLPMEAG---PALWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 495 -i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
.-++...|.+++...-++.+....+ ...-..|.-+-.+.|++..|...|+.+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2245677888888887777732222 22345666677788888888888887766
No 367
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.43 E-value=4.7 Score=36.38 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=33.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040576 531 STHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKE 584 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 584 (641)
.+.+|.+.+.+++.+++++-|.....|..++..-.++|+++.|.+.+++..+.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 345566666666666666666666666666666666666666666666654443
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.28 E-value=4.5 Score=22.71 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 555 GPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
..|..++.+|...|++++|...+++..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999998754
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.91 E-value=15 Score=33.57 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-------HHHHhcC--CC----CCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 522 LWGALLSACSTHSNSELGKIVA-------QHLMELE--PR----DPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~-------~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
.+..+.+.|...|+.+.....+ +++.+.+ |. .....+.++.++.+.|++++|.+.+.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4555666677777755444444 4444433 22 2356778899999999999999999998654
No 370
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.83 E-value=5.4 Score=22.04 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=10.9
Q ss_pred HHHHHHhhcCCHHHHHHHHH
Q 040576 493 CMVDLLGRAGLMRDSEELVS 512 (641)
Q Consensus 493 ~li~~~~~~g~~~~A~~~~~ 512 (641)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34555555555555555543
No 371
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.42 E-value=15 Score=38.07 Aligned_cols=82 Identities=9% Similarity=-0.023 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHH
Q 040576 500 RAGLMRDSEELVSKL-PMEAG--PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENL 576 (641)
Q Consensus 500 ~~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (641)
-.|+...|...+... ...|. ......|.....+.|-+..|-.++.+.+.+....|-++..++++|....+.+.|++-
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 357777777776655 22222 223444566666677777777788777777766777778888888888888888888
Q ss_pred HHHhh
Q 040576 577 RRIMK 581 (641)
Q Consensus 577 ~~~m~ 581 (641)
++++.
T Consensus 699 ~~~a~ 703 (886)
T KOG4507|consen 699 FRQAL 703 (886)
T ss_pred HHHHH
Confidence 88773
No 372
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.10 E-value=73 Score=29.80 Aligned_cols=183 Identities=12% Similarity=0.072 Sum_probs=120.8
Q ss_pred HcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH---cCC--CCchhHHHHHHHHHHhc
Q 040576 328 RCKDYCECLRLFDRMIRGDAK---PNEASLMSVLTACANMGVIDIGQWIHSYIQK---CRI--KPDVLLSTSLLTMYAKC 399 (641)
Q Consensus 328 ~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~--~~~~~~~~~li~~~~~~ 399 (641)
+..++++|+.-|++..+..-. ..-.....++....+.|++++....+.++.. +.+ .-+....|++++.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345889999999998874222 2223556678889999999999888877653 222 12455677787777777
Q ss_pred CCHHHHHHHHhhcCC-----CChh----HHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCC------CCHHHHHHHH
Q 040576 400 GVMDLARNVFDNMTE-----KNVV----SWNSMIMGYGMHGQGEKALEMFMEMEKR-----GPT------PNDATFICVL 459 (641)
Q Consensus 400 g~~~~A~~~~~~~~~-----~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~------p~~~~~~~ll 459 (641)
.+.+--.++|+.-.+ +|.. +-+.|...|...+.+.+...+++++... |-. --...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 777776666665432 3333 3356778888888888888888887653 110 0123566667
Q ss_pred HHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHH----HHHhhcCCHHHHHHH
Q 040576 460 SACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMV----DLLGRAGLMRDSEEL 510 (641)
Q Consensus 460 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~~ 510 (641)
..|....+-..-..++++........|.+.....+- .+..+.|++++|..-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH
Confidence 788888877777788887766445556665554332 345678888887643
No 373
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.90 E-value=73 Score=29.70 Aligned_cols=194 Identities=9% Similarity=0.081 Sum_probs=99.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh
Q 040576 422 SMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACT-HAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR 500 (641)
Q Consensus 422 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 500 (641)
.++..+-+.|+++++...++++...+...+..--+.+..+|- ..|....+++++..+.....-..+ .....++.-|.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 356677788889999999998888876666655555554542 235555666666666542222211 122222222221
Q ss_pred c------CCHHHHHHHHHhC--C--CCCCHHHHHHHHHH-H----HhcC-------CHHHHHHHHHHHHh-----cCCCC
Q 040576 501 A------GLMRDSEELVSKL--P--MEAGPALWGALLSA-C----STHS-------NSELGKIVAQHLME-----LEPRD 553 (641)
Q Consensus 501 ~------g~~~~A~~~~~~~--~--~~~~~~~~~~l~~~-~----~~~g-------~~~~a~~~~~~~~~-----~~p~~ 553 (641)
. .--.+.+.+++.. | ..+....+..-+.| | +... -.+.|...|+.+.+ +.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 1 1124555555553 1 11222222222222 1 1111 24677788887764 55666
Q ss_pred CchHHHH----HHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHh
Q 040576 554 PGPYVLL----SNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKM 629 (641)
Q Consensus 554 ~~~~~~l----~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~ 629 (641)
|.-+... +-.|.-.|+.++|.++.++..+..+.. +..+.-++-. +....+.-|.+++..
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~----------------l~~l~e~~~~-d~~~ilqlLrdNl~l 227 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE----------------LDTLSEESYK-DSTLILQLLRDNLTL 227 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG----------------GGGSHTTTHH-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh----------------hcccchhhhH-HHHHHHHHHHHHHHh
Confidence 6433322 223567899999999999886654432 1222222222 256666666666665
Q ss_pred hhcc
Q 040576 630 CRRD 633 (641)
Q Consensus 630 ~~~~ 633 (641)
+...
T Consensus 228 W~~e 231 (236)
T PF00244_consen 228 WTSE 231 (236)
T ss_dssp HTTT
T ss_pred cccc
Confidence 5543
No 374
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.62 E-value=85 Score=30.31 Aligned_cols=115 Identities=8% Similarity=-0.118 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 040576 467 MVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAG-------LMRDSEELVSKLPMEAGPALWGALLSACST----HSN 535 (641)
Q Consensus 467 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 535 (641)
+..+|..+|+++.+ .|..+.......+...|...+ +...|...+.++-..-++.....+...|.. ..|
T Consensus 128 d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 55555555555555 343332112222333332221 223566666665322344444444433322 336
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---------------ChHHHHHHHHHhhhCCC
Q 040576 536 SELGKIVAQHLMELEPRDPGPYVLLSNIYASEG---------------KWDEVENLRRIMKEKEL 585 (641)
Q Consensus 536 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~ 585 (641)
.++|...|+++-+.+. ......++ .+...| +...|...+......+.
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 7777777777777665 44455555 444444 77777887777755543
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.09 E-value=70 Score=32.37 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=33.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hhccHHHHHHHHHHhHH
Q 040576 426 GYGMHGQGEKALEMFMEMEKRGPTPNDA--TFICVLSACT--HAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 426 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 480 (641)
.+...+++..|.++|+.+... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344667788888888877776 444443 3334444432 45567777777777665
No 376
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.65 E-value=33 Score=34.76 Aligned_cols=138 Identities=17% Similarity=0.127 Sum_probs=86.7
Q ss_pred HHHhcCCHHHHHH-HHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHH
Q 040576 395 MYAKCGVMDLARN-VFDNMTE--KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEG 471 (641)
Q Consensus 395 ~~~~~g~~~~A~~-~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 471 (641)
--...|++..|-+ ++.-+.. .++.........+...|+++.+...+...... +-....+...++....+.|++++|
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3345677766554 4444432 23333333344566789999999998876654 344567888899999999999999
Q ss_pred HHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH--HHhcCC
Q 040576 472 WWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSA--CSTHSN 535 (641)
Q Consensus 472 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~--~~~~g~ 535 (641)
...-..|.. ..+. +.+.........-..|-++++...+++. . ..|....|...+.. |...|+
T Consensus 377 ~s~a~~~l~-~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 377 LSTAEMMLS-NEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHhc-cccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 999988877 3333 2333332233334567789999888886 2 23555566666654 444443
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.64 E-value=9.6 Score=28.00 Aligned_cols=46 Identities=9% Similarity=0.014 Sum_probs=22.0
Q ss_pred hhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHH
Q 040576 464 HAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEE 509 (641)
Q Consensus 464 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 509 (641)
+...-++|+..|....++..-.|+ -.++.+++.+|+..|+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555542222222 2344455555555555555544
No 378
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.27 E-value=34 Score=30.61 Aligned_cols=73 Identities=8% Similarity=-0.006 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhh--CCCCchHHHHHHHHHHhhcCCHHHH
Q 040576 434 EKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIY--KIEPKVEHYGCMVDLLGRAGLMRDS 507 (641)
Q Consensus 434 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A 507 (641)
+.|...|-++...+.--++.....|...|. ..+.+++..++-+..+.. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555555443333333333333332 455555555555554411 1134455555555555555555554
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.52 E-value=9.2 Score=24.55 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=17.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC
Q 040576 322 LLALYVRCKDYCECLRLFDRMIRGD 346 (641)
Q Consensus 322 li~~~~~~g~~~~A~~~~~~m~~~g 346 (641)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667777777777777777776543
No 380
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.40 E-value=1.1e+02 Score=30.68 Aligned_cols=26 Identities=23% Similarity=0.366 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcC--Ch--HHHHHHHHHhh
Q 040576 556 PYVLLSNIYASEG--KW--DEVENLRRIMK 581 (641)
Q Consensus 556 ~~~~l~~~~~~~g--~~--~~A~~~~~~m~ 581 (641)
....++.+|.... -| .++..+++...
T Consensus 261 ~~~ll~~lYv~R~~~LWk~~~~l~wL~~~~ 290 (360)
T PF04910_consen 261 SLKLLTELYVERSKDLWKEPEVLSWLEDNA 290 (360)
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Confidence 4556666666432 22 45666666553
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.84 E-value=17 Score=37.76 Aligned_cols=98 Identities=16% Similarity=0.063 Sum_probs=72.9
Q ss_pred hccHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040576 465 AGMVLEGWWYFDLMQRIYKIEPK--VEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGK 540 (641)
Q Consensus 465 ~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~ 540 (641)
.|+...|...+..+.. ..|. ....-.|...+.+.|...+|-.++.+. . ....+.++..+..++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 5788888888777654 3443 223344666777778888888877664 2 2344567788889999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 541 IVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
+.++.+++++|+++..-..|..+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999988777766654
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.76 E-value=16 Score=26.89 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=34.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhhccHHHHHHHH
Q 040576 429 MHGQGEKALEMFMEMEKRGPTPND--ATFICVLSACTHAGMVLEGWWYF 475 (641)
Q Consensus 429 ~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~ 475 (641)
..++.++|+..|....+.-..|.. .++..++.+++..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778889998888876433332 26777888888889888877653
No 383
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.45 E-value=1.2e+02 Score=32.96 Aligned_cols=154 Identities=16% Similarity=0.206 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC-CChh----------HHHHHHHHHHHcCChHHHHHHHHHHHHC-C-CCCCHHH
Q 040576 388 LSTSLLTMYAKCGVMDLARNVFDNMTE-KNVV----------SWNSMIMGYGMHGQGEKALEMFMEMEKR-G-PTPNDAT 454 (641)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~li~~~~~~~~~~~A~~~~~~m~~~-g-~~p~~~~ 454 (641)
+...++-.|-...+++...++.+.+.. ||.. .|.-.+.---+-|+-++|+...-.|.+. | +.||...
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~C 282 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYC 282 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceee
Confidence 344455555566666666666665543 2211 1222222223456677777776666654 2 4555332
Q ss_pred -----HHH--HHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHH------------------------hhcCC
Q 040576 455 -----FIC--VLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLL------------------------GRAGL 503 (641)
Q Consensus 455 -----~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~------------------------~~~g~ 503 (641)
|.- +-+.|...+..+.|.++|++.-+ +.|+...--.+.-.+ +|.|.
T Consensus 283 l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 283 LCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGA 359 (1226)
T ss_pred eechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccch
Confidence 221 12234556677778888877744 566543322222222 23333
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 504 MRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 504 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
++.-.++++- ...+.+-.-..|+.+|.+..+++.++.|+.-
T Consensus 360 leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 360 LEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 3332222221 2344555667899999999999999998764
No 384
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.21 E-value=1.2e+02 Score=30.46 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC------CCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 287 SWNCMIDGYAKIGNVTSARNCFDRMCM------RNVVSWNILLALYVRCKDYCECLRLFDRMIR 344 (641)
Q Consensus 287 ~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 344 (641)
.+.-+.+.|..+|+++.|.+.|.+..+ .-+..|-.+|..-...|+|........+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345566777778888888888877521 2234566677777777888877777776655
No 385
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.46 E-value=90 Score=32.05 Aligned_cols=67 Identities=16% Similarity=0.056 Sum_probs=31.9
Q ss_pred HHhcCCCCCcch--HHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhcC
Q 040576 148 MMAKFVEHNHYT--FPLLGKVCAGIRSLREGKKVHARIVKCGFELDLF--VRNSLIHMYSVCGEVLDARKVFEDG 218 (641)
Q Consensus 148 m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 218 (641)
+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...++.|+.+....+++.+
T Consensus 21 Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 21 LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 334566555432 233344445555554 334444555544322 1122344445566666666666554
No 386
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.41 E-value=61 Score=30.63 Aligned_cols=57 Identities=4% Similarity=-0.131 Sum_probs=22.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 424 IMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 424 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
|.+++..+++.+++.+.-+--+.--+..+.....-|-.|.+.|.+..+.++-+.-..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 445555555555544433222210011122222233344555555555554444433
No 387
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=69.28 E-value=1.3e+02 Score=30.07 Aligned_cols=220 Identities=10% Similarity=0.043 Sum_probs=125.7
Q ss_pred cCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----h
Q 040576 399 CGVMDLARNVFDNMTE---------KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTH----A 465 (641)
Q Consensus 399 ~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 465 (641)
.++.+.|.+-+-...+ .+...+..++..|...++|+.--+...-+...... .......++.-+.. .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-lk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-LKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccCC
Confidence 5666666665544432 23345666777788888887766655544432112 12233333332221 1
Q ss_pred ccHHHHHHH---HHHhHHhhCCCCc---hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-----HH---HHHHHHHHHH
Q 040576 466 GMVLEGWWY---FDLMQRIYKIEPK---VEHYGCMVDLLGRAGLMRDSEELVSKLPMEAG-----PA---LWGALLSACS 531 (641)
Q Consensus 466 g~~~~a~~~---~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~---~~~~l~~~~~ 531 (641)
.+.+.-+.+ ++...+ ..+-.. ...-..|...+-.+|+.++|.+++.+.+++-- .. ...--+..|.
T Consensus 104 ~d~~~k~~li~tLr~Vte-gkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG 182 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTE-GKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCL 182 (439)
T ss_pred CCchhHHHHHHHHHHhhc-CceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 122222222 222222 111111 23334577788899999999999998852210 00 1112234578
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC-------chHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEE-Eeeeeeccc
Q 040576 532 THSNSELGKIVAQHLMELEPRDP-------GPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLV-HPGEFASES 603 (641)
Q Consensus 532 ~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-~~~~~~~~~ 603 (641)
..+|+-.|.-+-+++....-+++ ..|..++......+.+=++-+.++...+-|-.+...--|+ .+-..+.=
T Consensus 183 ~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f- 261 (439)
T KOG1498|consen 183 LRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSF- 261 (439)
T ss_pred HhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeE-
Confidence 88999999988888765432222 3688888888899999999999999887776665555566 11111111
Q ss_pred ccccCCCCchhhHHHHHHHHH
Q 040576 604 IVENCPPHRKCIVYSMLGEIG 624 (641)
Q Consensus 604 ~~~~~p~~~~~~~~~~l~~l~ 624 (641)
..+-|.+.+ -.+.+.++.
T Consensus 262 -~~LAp~dne--Qsdll~~is 279 (439)
T KOG1498|consen 262 -CVLAPHDNE--QSDLLARIS 279 (439)
T ss_pred -EeecCCCcH--HHHHHHHHh
Confidence 345677766 666666655
No 388
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.66 E-value=1.4e+02 Score=30.50 Aligned_cols=139 Identities=10% Similarity=-0.032 Sum_probs=69.3
Q ss_pred hhcCCChHHHHHhhhcCCCCCccc--HHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcc--hHHHHHHHHhcCCCchh
Q 040576 100 CTSLSSVSLSVLFFDGIQEPDAFM--CNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHY--TFPLLGKVCAGIRSLRE 175 (641)
Q Consensus 100 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~ 175 (641)
....|+.+-+..+++.-..++... ..+.+...+..|+.+ +.+ .+.+.|..|+.. .....+...+..|+.+.
T Consensus 9 A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~-~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 9 AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIK-LLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred HHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHH-HHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 356788888888887654444322 233344445566654 333 444566555432 12233444556777766
Q ss_pred HHHHHHHHHHhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeH--HHHHHHHHHhCCChHHHHHHHh
Q 040576 176 GKKVHARIVKCGFELDLF---VRNSLIHMYSVCGEVLDARKVFEDGPVWDLVT--WNSMIDGYVKNREVGFARELFD 247 (641)
Q Consensus 176 a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 247 (641)
+..++ +.|...+.. .....+...+..|+.+-+..+++.+..++... -.+.+...+..|+.+-+..+++
T Consensus 84 v~~Ll----~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 84 VEELL----DLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHHH----HcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 55444 444322111 11234444556677777777776655443221 1122333444555554444443
No 389
>PRK10941 hypothetical protein; Provisional
Probab=68.15 E-value=42 Score=31.95 Aligned_cols=68 Identities=12% Similarity=0.003 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 040576 491 YGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYV 558 (641)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 558 (641)
.+.+-.+|.+.++++.|+.+.+.+ ...|+ +.-+..-.-.|.+.|.+..|..-++..++..|+++..-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 445566788899999999988887 33344 556777777889999999999999999999998875433
No 390
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=67.95 E-value=1.7e+02 Score=30.99 Aligned_cols=176 Identities=12% Similarity=0.110 Sum_probs=83.4
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhcCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040576 285 VVSWNCMIDGYAKIGNVTSARNCFDRMCMR---NVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTAC 361 (641)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 361 (641)
...|...++.-.+.|+.+.+.-+|++..-| =...|--.+.-....|+.+-|-.++....+--++-...+-..-...+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 455666666667777777777777766332 12234444444444466666666665554432222221111111123
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH---HHHhhcCC--CChhHHHHHHHH-----HHHcC
Q 040576 362 ANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLAR---NVFDNMTE--KNVVSWNSMIMG-----YGMHG 431 (641)
Q Consensus 362 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~li~~-----~~~~~ 431 (641)
-..|+++.|..+++.+...- +--..+-..-+....+.|+.+.+. .++....+ .+....+.+.-- +.-.+
T Consensus 377 e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 34567777777777776643 212222223344455556666555 33332221 122111211111 22245
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040576 432 QGEKALEMFMEMEKRGPTPNDATFICVLSAC 462 (641)
Q Consensus 432 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 462 (641)
+.+.|..++.+|.+. ..++..-|..++.-+
T Consensus 456 d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 456 DADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred CHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 556666666666554 233444444444443
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=67.67 E-value=9.5 Score=21.88 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 040576 534 SNSELGKIVAQHLMELEPRDPGPYVLLSNI 563 (641)
Q Consensus 534 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 563 (641)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888899999998888887777766543
No 392
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.81 E-value=95 Score=29.99 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=32.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhhccHHHHHHHHHHh
Q 040576 422 SMIMGYGMHGQGEKALEMFMEMEKRGPTPNDA---TFICVLSACTHAGMVLEGWWYFDLM 478 (641)
Q Consensus 422 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~ 478 (641)
.|..+-.+.|+..+|.+.|+.+.+. .|-.. ....|+.+|....-+.....++-+-
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555678888888888776654 22222 2334666776666555555554443
No 393
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.81 E-value=2e+02 Score=31.44 Aligned_cols=121 Identities=11% Similarity=0.071 Sum_probs=61.7
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHHHH-hcCCCCCcc--hHHHHHHHHh-cCCCchhHHHHHHHHHHhCCCCChh
Q 040576 118 EPDAFMCNTIMKSFLMLNDPFGALSFYYEKMM-AKFVEHNHY--TFPLLGKVCA-GIRSLREGKKVHARIVKCGFELDLF 193 (641)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~-~~~~~~~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~ 193 (641)
+.+...|..||.. |+..++ ... ...++|..+ ++-.+...+. ...+++.|+..++......-.++..
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~-~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLE-AVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT 96 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHH-HHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 3445567666653 555665 444 333444332 3444444444 5677888888887665433222221
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHhcCC----CCCeeHHH----HH-HHHHHhCCChHHHHHHHhhC
Q 040576 194 -----VRNSLIHMYSVCGEVLDARKVFEDGP----VWDLVTWN----SM-IDGYVKNREVGFARELFDFM 249 (641)
Q Consensus 194 -----~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~----~l-i~~~~~~g~~~~A~~~~~~m 249 (641)
....++..|.+.+... |.+.+++.. ......|. -+ +..+...+++..|++.++.+
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~ 165 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSI 165 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2335566666666555 777666522 11111222 22 22222336777777777666
No 394
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.41 E-value=47 Score=27.06 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 040576 435 KALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMV 495 (641)
Q Consensus 435 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 495 (641)
+..+-++....-.+.|++......+.+|.+.+++..|.++|+-++.+.| +....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 3444556666677899999999999999999999999999999887443 3334565555
No 395
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.28 E-value=86 Score=28.95 Aligned_cols=118 Identities=8% Similarity=-0.091 Sum_probs=71.3
Q ss_pred HHHhcCCHHHHHHHHhhcC--CCChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHH
Q 040576 395 MYAKCGVMDLARNVFDNMT--EKNVV-SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDA-TFICVLSACTHAGMVLE 470 (641)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 470 (641)
-|....+++.|...|.+.. .|++. -|+.-+.++.+.++++.+..--.+..+ +.||.+ ....+..+......+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 4555677888888777665 36553 456677778888888888777776666 466765 33345556667778888
Q ss_pred HHHHHHHhHHh---hCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 471 GWWYFDLMQRI---YKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 471 a~~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
|+..+.+.... ..+.+.......|.++--..=...+..++.++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88887776431 233344444554444433333334444444443
No 396
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=66.17 E-value=1.6e+02 Score=30.13 Aligned_cols=119 Identities=7% Similarity=-0.125 Sum_probs=56.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCC
Q 040576 189 ELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVG 268 (641)
Q Consensus 189 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g 268 (641)
.++..+-.....++...+.......+..-....++......+.++...+. +-...+..-+..+|...-...+.++...+
T Consensus 97 d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 97 AGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 34555666777777766665555555444445555554445555544331 11111112223444444445555555555
Q ss_pred ChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 040576 269 DMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFD 309 (641)
Q Consensus 269 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 309 (641)
..+..-.+.......+..+-..-+.+....|. .+|...+.
T Consensus 176 ~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~ 215 (410)
T TIGR02270 176 RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCR 215 (410)
T ss_pred cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHH
Confidence 44333333333334455555555555555555 44444433
No 397
>PRK13342 recombination factor protein RarA; Reviewed
Probab=66.13 E-value=1.6e+02 Score=30.20 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHH
Q 040576 348 KPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNM---TEKNVVSWNSMI 424 (641)
Q Consensus 348 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li 424 (641)
..+......++..+ .|+...+..+++.+...+...+.. ...+++... ...+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~----------------~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLE----------------LLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHH----------------HHHHHHhhhhhccCCCccHHHHHH
Confidence 45555555554433 688888888777765432112221 122222211 122223344455
Q ss_pred HHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040576 425 MGYGM---HGQGEKALEMFMEMEKRGPTPNDATFICVLSACTH 464 (641)
Q Consensus 425 ~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 464 (641)
.++.+ .++.+.|+.++.+|.+.|..|....-..++.++..
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 55544 47899999999999998877765444334444433
No 398
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=65.97 E-value=2.6e+02 Score=32.37 Aligned_cols=27 Identities=7% Similarity=-0.109 Sum_probs=13.6
Q ss_pred HHHhhcCCCCchHHHHHHHHHHhcCCh
Q 040576 275 GLFDLMPFRDVVSWNCMIDGYAKIGNV 301 (641)
Q Consensus 275 ~~~~~~~~~~~~~~~~li~~~~~~~~~ 301 (641)
.+...+..++..+...-+..+.+.+..
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~ 651 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP 651 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch
Confidence 333444455555555555555555543
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.40 E-value=22 Score=27.44 Aligned_cols=53 Identities=6% Similarity=0.014 Sum_probs=37.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC---------CchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 530 CSTHSNSELGKIVAQHLMELEPRD---------PGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 530 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
..+.||+..|...+.+........ ......++.+....|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456778888877777766533211 12345577788899999999999999854
No 400
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.22 E-value=1.3e+02 Score=28.60 Aligned_cols=120 Identities=11% Similarity=0.094 Sum_probs=66.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHccCCHHHHHHHHH----HHHHcCCCCchhHHH
Q 040576 322 LLALYVRCKDYCECLRLFDRMIRGDAKPNEAS-------LMSVLTACANMGVIDIGQWIHS----YIQKCRIKPDVLLST 390 (641)
Q Consensus 322 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~~~~~~g~~~~a~~~~~----~~~~~~~~~~~~~~~ 390 (641)
+.+-..+.+++++|+..+.+....|+..|..+ ...+...|...|+.....+... .|.+..-+-.+.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44556678899999999999999988777654 4456666777776655444332 222222222344555
Q ss_pred HHHHHHHhc-CCHHHHHHHHhhcCC---CChh------HHHHHHHHHHHcCChHHHHHHHH
Q 040576 391 SLLTMYAKC-GVMDLARNVFDNMTE---KNVV------SWNSMIMGYGMHGQGEKALEMFM 441 (641)
Q Consensus 391 ~li~~~~~~-g~~~~A~~~~~~~~~---~~~~------~~~~li~~~~~~~~~~~A~~~~~ 441 (641)
+|++.+-.. ..++.-..+.....+ +.-. .-..+|..+.+.|++.+|+.+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 555555432 334444444444332 1111 12335556666666666665543
No 401
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.95 E-value=1.3e+02 Score=28.57 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=34.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhhccHHHHHH
Q 040576 424 IMGYGMHGQGEKALEMFMEMEKRGPTPNDAT-------FICVLSACTHAGMVLEGWW 473 (641)
Q Consensus 424 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~~~~~~g~~~~a~~ 473 (641)
..-..+.+++++|+..+.+....|+..+..+ ...+...|...|+...-.+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 4445667889999999999998887766544 3445666666666554433
No 402
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.17 E-value=1e+02 Score=32.38 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=48.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCChHHHHHHHHHhh-hCCCcccCceEEE-Eeeeeec
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPR-DPGPYVLLSNIYA-SEGKWDEVENLRRIMK-EKELEKAVGSSLV-HPGEFAS 601 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~-~~~~~~~ 601 (641)
....+.|-+.-|.+..+.+++++|. ||.....+++.|+ ++.+|+--+++++... .+.+...|-..+. ++..|+.
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l 427 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFL 427 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHH
Confidence 3456778888888888888888887 7777777777766 6677777777777663 3444445544444 4444443
No 403
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=63.77 E-value=44 Score=31.44 Aligned_cols=55 Identities=27% Similarity=0.234 Sum_probs=50.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
.++.+.++++.|....++.+.++|.++.-..--+-+|.+.|-+..|++-++...+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 4588899999999999999999999998888899999999999999999998733
No 404
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.73 E-value=96 Score=29.40 Aligned_cols=88 Identities=9% Similarity=-0.031 Sum_probs=45.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---
Q 040576 322 LLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAK--- 398 (641)
Q Consensus 322 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 398 (641)
=|.+++..++|.+++...-+--+.--+.........|-.|.+.+....+.++-..-.+..-.-+..-|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36677777888877765544433211122223334444566777776666666555543222223335555555433
Q ss_pred --cCCHHHHHHHH
Q 040576 399 --CGVMDLARNVF 409 (641)
Q Consensus 399 --~g~~~~A~~~~ 409 (641)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 35555555554
No 405
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.20 E-value=73 Score=25.15 Aligned_cols=86 Identities=10% Similarity=0.106 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 366 VIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEK 445 (641)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 445 (641)
..++|..|.+.+...+. -...+.-+-+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 56777788877777653 223333334456677888888855544555677777766544 467888888888887776
Q ss_pred CCCCCCHHHH
Q 040576 446 RGPTPNDATF 455 (641)
Q Consensus 446 ~g~~p~~~~~ 455 (641)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 3343444
No 406
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.69 E-value=95 Score=26.25 Aligned_cols=77 Identities=10% Similarity=0.174 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---------CCChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040576 389 STSLLTMYAKCGVMDLARNVFDNMT---------EKNVVSWNSMIMGYGMHGQ-GEKALEMFMEMEKRGPTPNDATFICV 458 (641)
Q Consensus 389 ~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~l 458 (641)
.++++.-....+++.....+++.+. ..+..+|.+++.+..+..- ---+..+|.-|.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444555555555555443 1344567777777744444 23456667777776777777777777
Q ss_pred HHHHHhh
Q 040576 459 LSACTHA 465 (641)
Q Consensus 459 l~~~~~~ 465 (641)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776653
No 407
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=61.27 E-value=2e+02 Score=29.50 Aligned_cols=172 Identities=6% Similarity=-0.144 Sum_probs=77.1
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHH
Q 040576 164 GKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFAR 243 (641)
Q Consensus 164 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 243 (641)
|.++...| ..+...+-...... ++...+.....++....+......+.+.+..++.......+.++.+.+..+-..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 44555555 34455444444322 223333333333322222222334444455555556666777777666655555
Q ss_pred HHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHH
Q 040576 244 ELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILL 323 (641)
Q Consensus 244 ~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 323 (641)
.+......++...-...+.++...+. +-...+...+..++..+...-+.+++..+..+..-.+-.-....|...-..-+
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~ 199 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAAL 199 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHH
Confidence 54444444555444455555544331 12222222333455555555555555555433222222222334444444444
Q ss_pred HHHHHcCChHHHHHHHHH
Q 040576 324 ALYVRCKDYCECLRLFDR 341 (641)
Q Consensus 324 ~~~~~~g~~~~A~~~~~~ 341 (641)
.+....|. .+|...+..
T Consensus 200 ~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 200 EAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHHHcCC-HhHHHHHHH
Confidence 45555555 444444443
No 408
>PF13934 ELYS: Nuclear pore complex assembly
Probab=61.15 E-value=1.1e+02 Score=28.23 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=9.6
Q ss_pred HHHHHHhhccHHHHHHHHHH
Q 040576 458 VLSACTHAGMVLEGWWYFDL 477 (641)
Q Consensus 458 ll~~~~~~g~~~~a~~~~~~ 477 (641)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444444555555555444
No 409
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=60.97 E-value=3.1e+02 Score=31.68 Aligned_cols=253 Identities=11% Similarity=-0.004 Sum_probs=142.6
Q ss_pred HHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCCh-HHHHHHHhhcCCCCchHHHHH
Q 040576 213 KVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDM-EAANGLFDLMPFRDVVSWNCM 291 (641)
Q Consensus 213 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~l 291 (641)
.+.+.+..+|+.+-...+..+.+.+..+-...+...+..+|...-...+.++.+.+.. .....+...+..++..+....
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A 704 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA 704 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence 4444455677777777777777777644333344444555554444555555444321 111222233344666666666
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-H
Q 040576 292 IDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDI-G 370 (641)
Q Consensus 292 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a 370 (641)
+..+...+.-+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...+..+. +
T Consensus 705 ~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~ 776 (897)
T PRK13800 705 LDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPA 776 (897)
T ss_pred HHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchh
Confidence 66666543221 2334455566666655666666666655432 22222 23556666666667766665433 2
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 040576 371 QWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLAR-NVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPT 449 (641)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 449 (641)
...+..+.+ .++..+-...+.++.+.|....+. .+...+.+++...-...+.++...+. +++...+..+.+ .
T Consensus 777 ~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D 849 (897)
T PRK13800 777 GDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---D 849 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---C
Confidence 333444433 356777788888888888766553 34444555666666667777777765 456666666664 5
Q ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 450 PNDATFICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 450 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
|+...=...+.++.+.+....+...+..+.+
T Consensus 850 ~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 850 PHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5666666677777665434456666666655
No 410
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.64 E-value=1.1e+02 Score=25.92 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=55.7
Q ss_pred HHHHHHhCCCCCh--hHHHHHHHHHhhcCCChHHHHHhhhcCC---------CCCcccHHHHHHHHHcCCC-chhHHHHH
Q 040576 77 HTQLLVSGLSQDS--FAASRVLKKLCTSLSSVSLSVLFFDGIQ---------EPDAFMCNTIMKSFLMLND-PFGALSFY 144 (641)
Q Consensus 77 ~~~~~~~g~~~~~--~~~~~ll~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~ 144 (641)
...|...+..++. ...|.+|. .....+++.....+++.+. ..+...|+.++.+.++... ---+..+|
T Consensus 25 ~~y~~~~~~~~~~k~~fiN~iL~-hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf 103 (145)
T PF13762_consen 25 LPYMQEENASQSTKTIFINCILN-HLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLF 103 (145)
T ss_pred HHHhhhcccChhHHHHHHHHHHH-HHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHH
Confidence 3445555555544 45667777 3456677777777776652 2344566777777755554 33455666
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHhcC
Q 040576 145 YEKMMAKFVEHNHYTFPLLGKVCAGI 170 (641)
Q Consensus 145 ~~~m~~~~~~~~~~~~~~ll~~~~~~ 170 (641)
. .|++.+.+++..-|..++++|.+-
T Consensus 104 ~-~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 104 N-FLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred H-HHHHcCCCCCHHHHHHHHHHHHcC
Confidence 6 666666677777777777766543
No 411
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.62 E-value=40 Score=28.35 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 040576 504 MRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGK 569 (641)
Q Consensus 504 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 569 (641)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|+|...-...+++|...|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 356777777774 334444455567789999999999999999999999988888888876664
No 412
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.72 E-value=67 Score=26.43 Aligned_cols=42 Identities=7% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 040576 538 LGKIVAQHLME--LEPRDPGPYVLLSNIYASEGKWDEVENLRRI 579 (641)
Q Consensus 538 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 579 (641)
.+..+|+.+.. ++...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777765 4456667788888888888888888888875
No 413
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.32 E-value=80 Score=32.36 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
.++....+...+.+-.+.+.....+.+.....-...+.-.|++..|.+++-..
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s 266 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS 266 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc
Confidence 34455556666666666666666677777777788899999999999987654
No 414
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.25 E-value=2.3e+02 Score=29.28 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=66.6
Q ss_pred HHHhcCCHHHHHHHHhhcCC---C---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCCH---
Q 040576 395 MYAKCGVMDLARNVFDNMTE---K---------NVVSWNSMIMGYGMHGQGEKALEMFMEMEK-------RGPTPND--- 452 (641)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~~~---~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-------~g~~p~~--- 452 (641)
.+.-.|++.+|.+++....- + .-..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34456888888887765431 1 123467777777777887777777776653 4655532
Q ss_pred --------HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHh
Q 040576 453 --------ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLG 499 (641)
Q Consensus 453 --------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 499 (641)
.+|+ ..-.|.+.|++-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 1232 333567788999999988888774 4456667777777765
No 415
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.13 E-value=1.2e+02 Score=29.44 Aligned_cols=120 Identities=10% Similarity=-0.003 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------hccHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHHhhcCCH
Q 040576 432 QGEKALEMFMEMEKRGPTPNDATFICVLSACTH------AGMVLEGWWYFDLMQRIYKIEPKV-EHYGCMVDLLGRAGLM 504 (641)
Q Consensus 432 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~ 504 (641)
-.+++..++++....+. |.+......|.++-- .-+|.....+|+.+.. +.|++ .+.|.-+ +.....-.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAV-Ala~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAV-ALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHH-HHHHhhhH
Confidence 35788888988888764 788877777776532 3478888888888876 55653 3344332 34444456
Q ss_pred HHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 040576 505 RDSEELVSKLPMEAGP----ALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGP 556 (641)
Q Consensus 505 ~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 556 (641)
+.++..++.+...|.. ..+..-...+.+.|+.++|...|++++.+.++...-
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 7777777766433222 223334445789999999999999999988776543
No 416
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.45 E-value=47 Score=25.07 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=13.3
Q ss_pred CChHHHHHHHHhcCCCCcchHHHHHHHHHHcCC
Q 040576 299 GNVTSARNCFDRMCMRNVVSWNILLALYVRCKD 331 (641)
Q Consensus 299 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 331 (641)
|+.+.|..+++.+. +.+..|...+.++...|.
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 34444444444444 333444444444444433
No 417
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.36 E-value=14 Score=40.29 Aligned_cols=95 Identities=13% Similarity=0.172 Sum_probs=59.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHH
Q 040576 430 HGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEE 509 (641)
Q Consensus 430 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 509 (641)
.+++++.+.+.+...--| -++|..+.+.|-.+-|+.+.+.-... ......+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 456666665544332211 12444555666666666554332221 123456788888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 510 LVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 510 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
.-.++. +..+|..|+......|+.+-|+..|++...
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 877764 677888888888888888888888876543
No 418
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.12 E-value=51 Score=26.26 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEK 445 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 445 (641)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888888776
No 419
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.04 E-value=44 Score=29.98 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 040576 518 AGPALWGALLSACSTHSNSELGKIVAQHLMELEP 551 (641)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 551 (641)
|++..+..++.++...|+.++|....+++..+.|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444444444444444444444
No 420
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.61 E-value=1.6e+02 Score=26.24 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=30.6
Q ss_pred cCCCCCcchHHHHHHHHhcCC----CchhHHHHHHHHHHhCCCCChh----HHHHHHHHHHhcCCHHHHHHHH
Q 040576 151 KFVEHNHYTFPLLGKVCAGIR----SLREGKKVHARIVKCGFELDLF----VRNSLIHMYSVCGEVLDARKVF 215 (641)
Q Consensus 151 ~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~ 215 (641)
.|..++...++.+++.+.... .++.+..+-.+....++..+-. ....=|..|-+.|||.+--.+|
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly 74 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLY 74 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHH
Confidence 355666777777776665443 3333333333333334333222 2222334445556655554443
No 421
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=54.55 E-value=65 Score=32.60 Aligned_cols=55 Identities=11% Similarity=0.281 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc-----------CCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 040576 289 NCMIDGYAKIGNVTSARNCFDRM-----------CMRNVVSWNILLALYVRCKDYCECLRLFDRMI 343 (641)
Q Consensus 289 ~~li~~~~~~~~~~~A~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 343 (641)
..|++.++-.|++..|+++++.+ ..-.+.+|..+.-+|.-.+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444 22244566667777777788888877777654
No 422
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.11 E-value=1.9e+02 Score=26.74 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=34.9
Q ss_pred HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040576 408 VFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSAC 462 (641)
Q Consensus 408 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 462 (641)
+|.-.-+|.+.....|+..+. .+++++|.+++.++-+.|+.|... .+.+.+.+
T Consensus 230 VfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 344444567777777776654 477889999999988888887543 23344443
No 423
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.61 E-value=1e+02 Score=23.30 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=25.2
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 040576 398 KCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKA 436 (641)
Q Consensus 398 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 436 (641)
..|+.+.|.+++..+. .....|..++.++...|+.+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466777777777777 6666677777777666665444
No 424
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.53 E-value=4e+02 Score=29.98 Aligned_cols=181 Identities=12% Similarity=0.019 Sum_probs=97.1
Q ss_pred HhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHH--HHHHH
Q 040576 397 AKCGVMDLARNVFDNMTE--------KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATF---ICV--LSACT 463 (641)
Q Consensus 397 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~---~~l--l~~~~ 463 (641)
...|+++.|.++-+...+ ..+..+..+..+..-.|++++|..+..+..+..-.-+...| ..+ ...+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 345777777777665442 45567777888888889999998887766553212232222 222 22345
Q ss_pred hhcc--HHHHHHHHHHhHHhhCCC-C----chHHHHHHHHHHhhcCCHHHHHHHHHh----C-CCCCCHH--H--HHHHH
Q 040576 464 HAGM--VLEGWWYFDLMQRIYKIE-P----KVEHYGCMVDLLGRAGLMRDSEELVSK----L-PMEAGPA--L--WGALL 527 (641)
Q Consensus 464 ~~g~--~~~a~~~~~~~~~~~~~~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~----~-~~~~~~~--~--~~~l~ 527 (641)
..|. +.+....|.......... | -...+..+..++.+ ++.+..-... - ...|... . +..|.
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 5663 333334444443311111 1 12344444555554 3333322221 1 1223322 1 22566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC-C-chHHHH-----HHHHHhcCChHHHHHHHHHh
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPRD-P-GPYVLL-----SNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~~-~-~~~~~l-----~~~~~~~g~~~~A~~~~~~m 580 (641)
......|+.++|...++.+..+.... + ..|... ...-..+|+.++|.....+-
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 67788999999999999887754332 1 112211 12234678888888877763
No 425
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=51.12 E-value=55 Score=19.92 Aligned_cols=18 Identities=6% Similarity=-0.099 Sum_probs=8.8
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 040576 525 ALLSACSTHSNSELGKIV 542 (641)
Q Consensus 525 ~l~~~~~~~g~~~~a~~~ 542 (641)
.+...+...|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344445555555555555
No 426
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.47 E-value=25 Score=35.71 Aligned_cols=103 Identities=10% Similarity=0.023 Sum_probs=60.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcC
Q 040576 425 MGYGMHGQGEKALEMFMEMEKRGPTPNDATFIC-VLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAG 502 (641)
Q Consensus 425 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 502 (641)
..+...+.++.|..++.+..+. .||...|.. =..++.+.+++..|+.=+..+.+ ..|+ ...|..=..++.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhHH
Confidence 3455667778888888877774 666554433 23567777777777776666665 3343 223333334444555
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 040576 503 LMRDSEELVSKL-PMEAGPALWGALLSACST 532 (641)
Q Consensus 503 ~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~ 532 (641)
.+.+|...|+.. ...|+..-....+.-|..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 666666666665 455666665555555433
No 427
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=50.46 E-value=26 Score=31.91 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=37.0
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 498 LGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 498 ~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
....|+.+.|.+++++. ..-|+ ...|-.+...-.+.|+++.|...|++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44566667777777665 22333 3466667666777777777777777777777665
No 428
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=50.44 E-value=1.5e+02 Score=24.74 Aligned_cols=69 Identities=12% Similarity=-0.004 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHHhhcCC---HHHHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 486 PKVEHYGCMVDLLGRAGL---MRDSEELVSKL-P-MEAG--PALWGALLSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 486 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
++..+--.+.-++.+..+ ..+.+.++++. + ..|+ .....-|.-++.+.++++.+..+.+.+++.+|+|.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 444444445555555543 34445555554 1 2222 22333455567788888888888888888888875
No 429
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.56 E-value=79 Score=28.32 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=36.7
Q ss_pred hhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 464 HAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 464 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
...+.+......+.+.+.....|+..+|..++.++...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555544456788888888888888888888888888877
No 430
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.11 E-value=1.4e+02 Score=30.22 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhc
Q 040576 285 VVSWNCMIDGYAKIGNVTSARNCFDRM 311 (641)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~A~~~~~~~ 311 (641)
+.++--+.-+|.-.+++.+|.+.|...
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777778888888888888875
No 431
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.81 E-value=3.7e+02 Score=28.55 Aligned_cols=155 Identities=11% Similarity=0.032 Sum_probs=72.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hhccHHHHHHHHHHhHHhh--CCCCchHHHHHHHHHHhhc
Q 040576 425 MGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACT-HAGMVLEGWWYFDLMQRIY--KIEPKVEHYGCMVDLLGRA 501 (641)
Q Consensus 425 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~--~~~p~~~~~~~li~~~~~~ 501 (641)
..+.+.|-+..|+++-+-+......-|+.....+|..|+ +..+++--+++++...... ..-|+...-.+|+..|.+.
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 345566667777776666666544445555555666543 4556666666666554311 2234433233444445444
Q ss_pred CC---HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHHHHHHHHHhcCC----hHHH
Q 040576 502 GL---MRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLM-ELEPRDPGPYVLLSNIYASEGK----WDEV 573 (641)
Q Consensus 502 g~---~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~----~~~A 573 (641)
.. -+.|...+.++. +--+....-|+..+.-..+. +...++..- .........+..++.+|+.... ..++
T Consensus 430 ~~~~~rqsa~~~l~qAl-~~~P~vl~eLld~~~l~~da--~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~~vWk~P~~ 506 (665)
T KOG2422|consen 430 NEEDDRQSALNALLQAL-KHHPLVLSELLDELLLGDDA--LTKDLKFDGSSAENSELPALMLLVKLYANRNEEVWKLPDV 506 (665)
T ss_pred CChhhHHHHHHHHHHHH-HhCcHHHHHHHHhccCCchh--hhhhhcccccccccccchHHHHHHHHHHhhhhHhhcChHH
Confidence 43 233444444432 11222333444433322210 111111100 0111224578888888886652 3355
Q ss_pred HHHHHHhhh
Q 040576 574 ENLRRIMKE 582 (641)
Q Consensus 574 ~~~~~~m~~ 582 (641)
+..++....
T Consensus 507 ls~l~~~~~ 515 (665)
T KOG2422|consen 507 LSFLESAYH 515 (665)
T ss_pred HHHHHHHHH
Confidence 556665544
No 432
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.72 E-value=2.8e+02 Score=27.12 Aligned_cols=113 Identities=18% Similarity=0.024 Sum_probs=68.9
Q ss_pred ccHHHHHHHHHHhHHhhCC---CCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040576 466 GMVLEGWWYFDLMQRIYKI---EPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIV 542 (641)
Q Consensus 466 g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 542 (641)
+-.++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+....+
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 3467788888888772112 3455666677777888888776666666665456788888899998888999988899
Q ss_pred HHHHHhcC-CCCCchHHHHHHHHHhcCCh--HHHHHHHHH
Q 040576 543 AQHLMELE-PRDPGPYVLLSNIYASEGKW--DEVENLRRI 579 (641)
Q Consensus 543 ~~~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~ 579 (641)
++.++.-+ -.....+..+..+ ...+.. +.+.+.++.
T Consensus 224 l~~~l~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 224 LDLLLSNDKVRSQDIRYVLAGL-ASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHCTSTS-TTTHHHHHHHH-H-CSTTCHHHHHHHHHH
T ss_pred HHHHcCCcccccHHHHHHHHHH-hcCChhhHHHHHHHHHH
Confidence 99888843 2222334444433 323333 666665544
No 433
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.52 E-value=2.7e+02 Score=31.17 Aligned_cols=178 Identities=10% Similarity=0.079 Sum_probs=109.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 040576 327 VRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLAR 406 (641)
Q Consensus 327 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 406 (641)
.-++++++.+.+.+...--| .++|..+.+.|-.+-|..+.+.-. + -......+|+++.|+
T Consensus 604 Li~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~---------t---RF~LaLe~gnle~al 663 (1202)
T KOG0292|consen 604 LLNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDER---------T---RFELALECGNLEVAL 663 (1202)
T ss_pred HHhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcc---------h---heeeehhcCCHHHHH
Confidence 34566777766555432222 233444455565555544432211 1 124456789999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC
Q 040576 407 NVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP 486 (641)
Q Consensus 407 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 486 (641)
+.-..+- +...|..|+..-..+|+.+-|+-.|++... |..|--.|.-.|+.++-.+..+.+.. .-
T Consensus 664 e~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~----r~ 728 (1202)
T KOG0292|consen 664 EAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI----RN 728 (1202)
T ss_pred HHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh----hh
Confidence 8877764 556899999999999999999999987654 22333345556888777666655543 12
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 487 KVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
|... ....-.-.|+.++-..+++..+..|-. |. .-..+|.-++|..+.+..-.
T Consensus 729 D~~~---~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 729 DATG---QFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred hhHH---HHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 2211 111222468889988999887633322 22 23567888899999888765
No 434
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.17 E-value=2e+02 Score=25.39 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=27.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHH
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVEN 575 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 575 (641)
..|.+.|.+++|.+++++..+ +|++...-..|..+-.+...+...++
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 347777777777777777777 66665554444444444444444433
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.12 E-value=29 Score=28.62 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=25.2
Q ss_pred cCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 040576 133 MLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVC 167 (641)
Q Consensus 133 ~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~ 167 (641)
..|.-.+|..+|. .|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~-kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFR-KMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHH-HHHhCCCCCcc--HHHHHHHh
Confidence 3467788999999 89999998886 77777654
No 436
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.00 E-value=59 Score=21.30 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=22.9
Q ss_pred hcCCCchhHHHHHHHHHHhCCCCChhHHHHHHH
Q 040576 168 AGIRSLREGKKVHARIVKCGFELDLFVRNSLIH 200 (641)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 200 (641)
.+.|-..++..+++.|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666677777777777777777777666654
No 437
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.10 E-value=3.1e+02 Score=28.93 Aligned_cols=55 Identities=11% Similarity=0.139 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHH---HHHHHHHHcCChHHHHHHHHHHHH
Q 040576 391 SLLTMYAKCGVMDLARNVFDNMTEK--NVVSWN---SMIMGYGMHGQGEKALEMFMEMEK 445 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~---~li~~~~~~~~~~~A~~~~~~m~~ 445 (641)
.++.-|.+.+++++|..++..|.-. ....|. .+...+.+..-.++.+..++.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 4666788888888888888888632 222333 333444444434444444554443
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.78 E-value=1.7e+02 Score=24.06 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHH
Q 040576 435 KALEMFMEMEKRGPTPN-DATFICVLSACTHAGMVLEGWWYFDL 477 (641)
Q Consensus 435 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 477 (641)
.+.++|..|..+|+--. ..-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55666666665543333 23444455555555666666665543
No 439
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.30 E-value=5.6e+02 Score=29.93 Aligned_cols=80 Identities=6% Similarity=-0.112 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK----VEHYGCMVDLLGRAGLMRDSEELVSKLPME-AGPALWGALLS 528 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~ 528 (641)
-|..+++.+.+.+..+.+.++-..+++. +.++ ..+++++.+-....|.+-+|.+.+-.-+.. ........++.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvi 1062 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3555666666666666666666666552 2222 334556666666666666666665554311 11223444444
Q ss_pred HHHhcCC
Q 040576 529 ACSTHSN 535 (641)
Q Consensus 529 ~~~~~g~ 535 (641)
.+..+|.
T Consensus 1063 vLfecg~ 1069 (1480)
T KOG4521|consen 1063 VLFECGE 1069 (1480)
T ss_pred HHHhccc
Confidence 4444444
No 440
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=44.98 E-value=1.3e+02 Score=23.98 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 539 GKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 539 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
+.+.+.+...+.|+.+..+..|+.-+.....|+++..--++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~ 104 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRG 104 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 567777788888888777777776666666677766655554
No 441
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=44.29 E-value=3.5e+02 Score=27.20 Aligned_cols=93 Identities=12% Similarity=0.117 Sum_probs=52.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHH--HH-HHHHHHHHhhccHHHHHHHHHHhHHhhCCCCch-----HHH
Q 040576 422 SMIMGYGMHGQGEKALEMFMEMEKR--GPTPNDA--TF-ICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV-----EHY 491 (641)
Q Consensus 422 ~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~--~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~ 491 (641)
.|...+-..|+.++|..++.+..-. |.---.. .| .--++.|...+++-.|.-+-+++..++--.|+. ..|
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 3455566677777777666554321 1000000 00 112445666777777777777776645445553 346
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC
Q 040576 492 GCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 492 ~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
+.++......+.+=.+-+.|+..
T Consensus 216 ~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHhcccccchhhHHHHHHHH
Confidence 67777777777777777777665
No 442
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.78 E-value=1.5e+02 Score=23.60 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 318 SWNILLALYVRCKDYCECLRLFDRMIR 344 (641)
Q Consensus 318 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 344 (641)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488888888899999999999888876
No 443
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.72 E-value=47 Score=31.82 Aligned_cols=41 Identities=32% Similarity=0.421 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVL 459 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 459 (641)
-|+..|..-.+.|++++|+.++++..+.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 36788888889999999999999999988775556665443
No 444
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=43.71 E-value=3e+02 Score=26.40 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 040576 388 LSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEK-----RGPTPNDATF 455 (641)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~ 455 (641)
+++.....|..+|.+.+|.++-++... -+...|-.++..+...|+--.|..-++++.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 344455677888888888888887775 3445677788888888887777777776654 3666555443
No 445
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.51 E-value=26 Score=28.90 Aligned_cols=33 Identities=12% Similarity=0.300 Sum_probs=25.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040576 327 VRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTAC 361 (641)
Q Consensus 327 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 361 (641)
-..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677889999999999999885 66666544
No 446
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=43.19 E-value=1.1e+02 Score=24.74 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHHHH----HHHHH
Q 040576 504 MRDSEELVSKLP-------MEAGPALWGALLSACSTHSNSELGKIVAQHLM-------ELEPRDPGPYVLL----SNIYA 565 (641)
Q Consensus 504 ~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l----~~~~~ 565 (641)
...|+++-+.|| ..-|...+..|..++...|++++++...+.++ +++.+....|... +.++.
T Consensus 32 ~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~ 111 (144)
T PF12968_consen 32 CRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALE 111 (144)
T ss_dssp HHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHH
Q ss_pred hcCChHHHHHHHHHhhh
Q 040576 566 SEGKWDEVENLRRIMKE 582 (641)
Q Consensus 566 ~~g~~~~A~~~~~~m~~ 582 (641)
..|+.++|++.|+..-+
T Consensus 112 ~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 112 GLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HTT-HHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHH
No 447
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.94 E-value=95 Score=20.33 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=20.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040576 327 VRCKDYCECLRLFDRMIRGDAKPNEASLMSVLT 359 (641)
Q Consensus 327 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 359 (641)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345566666666666666666666666655543
No 448
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.91 E-value=3.3e+02 Score=26.60 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHHHHHH-HHHHhhccHHHHHHHHHHhHHhhCCCCc----h
Q 040576 418 VSWNSMIMGYGMHGQGEKALEMFMEMEK----RGPTPNDATFICVL-SACTHAGMVLEGWWYFDLMQRIYKIEPK----V 488 (641)
Q Consensus 418 ~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 488 (641)
..+.....-||+.|+-+.|++.+.+-.+ .|.+.|..-+..-+ --|....-+.+-++..+.+.+ .|-.-+ .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE-~GgDWeRrNRl 183 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIE-EGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH-hCCChhhhhhH
Confidence 3566777889999999999998877554 46777766444333 234455555566666666666 343332 3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 489 EHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
.+|..+- +....++.+|-.+|-+.
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHH
Confidence 3444333 23445788888877654
No 449
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=41.45 E-value=3.3e+02 Score=26.15 Aligned_cols=111 Identities=8% Similarity=-0.030 Sum_probs=54.2
Q ss_pred CHHHHHHHHhhcCCC-ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc-------cH
Q 040576 401 VMDLARNVFDNMTEK-NVVSWNSMIMGYGM----HGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAG-------MV 468 (641)
Q Consensus 401 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-------~~ 468 (641)
+...|.++|....+. +......|...|.. ..+..+|..+|++..+.|..+...+...+...+.... +.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 345555555544432 22333334444433 2366777777777777664432222333333333221 22
Q ss_pred HHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCC
Q 040576 469 LEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR----AGLMRDSEELVSKLP 515 (641)
Q Consensus 469 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~ 515 (641)
..|...+.++.. .+ +......+...|.. ..++++|...|.+..
T Consensus 172 ~~A~~~~~~aa~-~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa 218 (292)
T COG0790 172 KKALYLYRKAAE-LG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA 218 (292)
T ss_pred HhHHHHHHHHHH-hc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 356777776665 33 23333334444432 336777777777763
No 450
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.92 E-value=68 Score=22.42 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=14.2
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 456 ICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 456 ~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
..+|.++...|++++|.++.+.+..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455666666666666666665544
No 451
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.82 E-value=1.5e+02 Score=25.92 Aligned_cols=61 Identities=5% Similarity=-0.134 Sum_probs=41.5
Q ss_pred HHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 040576 147 KMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEV 208 (641)
Q Consensus 147 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 208 (641)
.++..|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 45667777666544 34455555566778899999998888777777666666677766643
No 452
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.44 E-value=2.7e+02 Score=27.00 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=22.6
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 394 TMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEK 445 (641)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 445 (641)
..+.+.++.....+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444443332 222223344455556666666666555443
No 453
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.67 E-value=59 Score=31.16 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040576 318 SWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMS 356 (641)
Q Consensus 318 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 356 (641)
-|+..|....+.||.++|+.++++..+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 467888888999999999999999998887655555543
No 454
>PRK14700 recombination factor protein RarA; Provisional
Probab=39.49 E-value=3.3e+02 Score=26.34 Aligned_cols=64 Identities=11% Similarity=0.117 Sum_probs=44.2
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHcCC
Q 040576 319 WNILLALYVR---CKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGV-----IDIGQWIHSYIQKCRI 382 (641)
Q Consensus 319 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~ 382 (641)
+.-+|+++.+ -.|.+.|+-.+.+|.+.|-.|.-..-..++.++...|. +..|...++.....|+
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3345666654 47899999999999999988888877777777777663 2334444444555554
No 455
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.24 E-value=3.6e+02 Score=26.15 Aligned_cols=78 Identities=8% Similarity=0.033 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----------cCCHHHH
Q 040576 336 LRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAK----------CGVMDLA 405 (641)
Q Consensus 336 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~A 405 (641)
.++++.|...++.|.-..|..+.-.+.+.=.+..+..+++.+...... +..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356777777788888777777777777777777788888777654322 3344444432 3555555
Q ss_pred HHHHhhcCCCChh
Q 040576 406 RNVFDNMTEKNVV 418 (641)
Q Consensus 406 ~~~~~~~~~~~~~ 418 (641)
.++++.-+..|+.
T Consensus 338 mkLLQ~yp~tdi~ 350 (370)
T KOG4567|consen 338 MKLLQNYPTTDIS 350 (370)
T ss_pred HHHHhcCCCCCHH
Confidence 5555555444433
No 456
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=39.24 E-value=3.9e+02 Score=26.33 Aligned_cols=115 Identities=12% Similarity=0.045 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh---cCCHHHHHH
Q 040576 433 GEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR---AGLMRDSEE 509 (641)
Q Consensus 433 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~ 509 (641)
.+.-+.+++++.+.+. -+.......+..+.+..+.++..+.|+.+... .+-+...|...++.... .-.+++...
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 3555677777777632 24445566677777777777778888888762 22245666666655433 123444444
Q ss_pred HHHhC-------CCC--------CC--HHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040576 510 LVSKL-------PME--------AG--PAL---WGALLSACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 510 ~~~~~-------~~~--------~~--~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
+|.+. ... ++ ... +..+..-+...|..+.|..+++.+++++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 44432 111 11 111 2222333578999999999999999976
No 457
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.68 E-value=1.7e+02 Score=24.78 Aligned_cols=59 Identities=5% Similarity=0.006 Sum_probs=42.2
Q ss_pred HHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 040576 147 KMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCG 206 (641)
Q Consensus 147 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 206 (641)
.+++.|++++..- ..++..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 11 ~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 5667887766543 3445667777777899999999999887776666555566666665
No 458
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.44 E-value=1.9e+02 Score=25.53 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=21.0
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040576 495 VDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSA 529 (641)
Q Consensus 495 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 529 (641)
+-.|.+.|.+++|.+++++.-..|+.......+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 44577788888888888776334554433433333
No 459
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=38.33 E-value=91 Score=23.47 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=13.8
Q ss_pred CChHHHHHHHHhcCCCCcchHHHHHHHHHHcC
Q 040576 299 GNVTSARNCFDRMCMRNVVSWNILLALYVRCK 330 (641)
Q Consensus 299 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 330 (641)
.+.+.|.++++.++.+...+|.....++...|
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 33444444444444444444444444444333
No 460
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.96 E-value=3.7e+02 Score=29.55 Aligned_cols=101 Identities=10% Similarity=0.099 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH----------HHHHHHHHhhccHHHHHHHHHHhHHhh-CCCC
Q 040576 418 VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATF----------ICVLSACTHAGMVLEGWWYFDLMQRIY-KIEP 486 (641)
Q Consensus 418 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~----------~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p 486 (641)
.+...|+..|....+++..+++.+.+.. -||..-+ ...++-=.+.|+-+.|+...-.+.++. .+.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4667788888889999999999998886 4543322 222222235688888888877766533 3556
Q ss_pred chHH-----HHH--HHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 040576 487 KVEH-----YGC--MVDLLGRAGLMRDSEELVSKL-PMEAGPA 521 (641)
Q Consensus 487 ~~~~-----~~~--li~~~~~~g~~~~A~~~~~~~-~~~~~~~ 521 (641)
|... |.- +...|...+..+.|.+.|++. ..+|...
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~ 321 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY 321 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh
Confidence 6432 221 112344566778889999887 5556644
No 461
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.67 E-value=1.8e+02 Score=23.91 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 040576 514 LPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLL 560 (641)
Q Consensus 514 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 560 (641)
+..-|++.....-+.+|.+.+|+..|.++++-+....++.-..|-.+
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34568888888888888888888888888887766555443344433
No 462
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.66 E-value=3.6e+02 Score=25.55 Aligned_cols=157 Identities=13% Similarity=0.053 Sum_probs=72.2
Q ss_pred hcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHccCCHH-HHH
Q 040576 297 KIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRM----IRGDAKPNEASLMSVLTACANMGVID-IGQ 371 (641)
Q Consensus 297 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~~~-~a~ 371 (641)
+.+++++|++++..- ...+.+.|+...|-++..-| .+.+++.|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345666666665442 22344555555444433332 33456666655555555544433211 122
Q ss_pred HHHHHHH---HcCCC--CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040576 372 WIHSYIQ---KCRIK--PDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKR 446 (641)
Q Consensus 372 ~~~~~~~---~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 446 (641)
++.+.++ +.+-. -++.....+...|.+.|++.+|+..|-.-.+++...+..++.-... .
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~----------------~ 134 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWST----------------K 134 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH----------------H
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHH----------------h
Confidence 2222222 22222 2567778888889999999888887755433333222222221111 2
Q ss_pred CCCCCHHHHH-HHHHHHHhhccHHHHHHHHHHhHH
Q 040576 447 GPTPNDATFI-CVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 447 g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
|...+...|. ..+--|.-.++...|...++...+
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2222223222 223335556888888887777665
No 463
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.50 E-value=4.5e+02 Score=26.60 Aligned_cols=23 Identities=9% Similarity=-0.077 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHH
Q 040576 455 FICVLSACTHAGMVLEGWWYFDL 477 (641)
Q Consensus 455 ~~~ll~~~~~~g~~~~a~~~~~~ 477 (641)
.+.|++.|...+.++.|..+..+
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK 234 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSK 234 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhc
Confidence 34444455555555555554443
No 464
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.46 E-value=4.5e+02 Score=26.60 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---------CCCCch
Q 040576 318 SWNILLALYVRCKDYCECLRLFDRMIRGD--AKPNEASLMSVLTACANMGVIDIGQWIHSYIQKC---------RIKPDV 386 (641)
Q Consensus 318 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~ 386 (641)
.+.-+...|...|+++.|++.|.+.+.-- .+-....|..+|....-.|++..+..+.....+. .+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 46668889999999999999999865421 1112234555666666778887777776666553 122333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhc
Q 040576 387 LLSTSLLTMYAKCGVMDLARNVFDNM 412 (641)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~~ 412 (641)
..+..+.+... +++..|.+.|-..
T Consensus 232 ~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 232 KCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 33444443333 3566666555433
No 465
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.17 E-value=3.7e+02 Score=25.50 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 040576 451 NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSAC 530 (641)
Q Consensus 451 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 530 (641)
++.....+...|.+.|++.+|+..|-.. -.|+...+..++......|...++ +.. ....+--|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~~~~e~-----------dlf-i~RaVL~y 151 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTKGYPSEA-----------DLF-IARAVLQY 151 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--H-----------HHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHhcCCcch-----------hHH-HHHHHHHH
Confidence 4455556667777778877777666332 224443333333333333332222 111 12222235
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 040576 531 STHSNSELGKIVAQHLMEL 549 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~ 549 (641)
...++...|...++...+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 5567777777766655543
No 466
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.04 E-value=60 Score=22.69 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 318 SWNILLALYVRCKDYCECLRLFDRMIR 344 (641)
Q Consensus 318 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 344 (641)
-.-.+|.+|.+.|++++|.++++++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344678899999999999998888765
No 467
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.00 E-value=1.9e+02 Score=22.13 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=27.0
Q ss_pred HHcCChHHHHHHHHHHHH----CCCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 428 GMHGQGEKALEMFMEMEK----RGPTPN----DATFICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 428 ~~~~~~~~A~~~~~~m~~----~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
.+.|++.+|.+.+.+..+ .+.... ......+.......|.+++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356777777655554433 221111 11222233345566777777777776655
No 468
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=36.98 E-value=3.5e+02 Score=25.20 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHH
Q 040576 321 ILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACA-NMGVIDIGQWIHSYIQK 379 (641)
Q Consensus 321 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~ 379 (641)
.+++.+.+.|+++++...++++...+...+..--+.+-.+|- ..|....+.+++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 466778888999999999999998877777766666665553 23444445555544443
No 469
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.56 E-value=3.5e+02 Score=25.02 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=10.0
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 040576 423 MIMGYGMHGQGEKALEMFME 442 (641)
Q Consensus 423 li~~~~~~~~~~~A~~~~~~ 442 (641)
++.++...|+.+.|+.+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444445555555555544
No 470
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.44 E-value=4.1e+02 Score=25.78 Aligned_cols=73 Identities=11% Similarity=0.153 Sum_probs=54.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHh----------hcCCHHH
Q 040576 437 LEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLG----------RAGLMRD 506 (641)
Q Consensus 437 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----------~~g~~~~ 506 (641)
.++|+.|.+.++.|.-..|..+.-.+.+.=.+...+.+|+.+.. |..-|..|+..|+ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 57888999999999999998888888888888999999999876 2222444444443 2477777
Q ss_pred HHHHHHhCC
Q 040576 507 SEELVSKLP 515 (641)
Q Consensus 507 A~~~~~~~~ 515 (641)
-+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777777764
No 471
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.04 E-value=4.3e+02 Score=25.89 Aligned_cols=26 Identities=4% Similarity=-0.152 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhH
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQ 479 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 479 (641)
.......-|++.|+.+.|.+.+.+.-
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44455556677777777766665543
No 472
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.88 E-value=2.8e+02 Score=25.93 Aligned_cols=65 Identities=15% Similarity=0.035 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 040576 491 YGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
+..+..++...|++-++++.-.++ ...| +...|-.-..+....=+..+|.+-|.++++++|.-..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 344456666778888888777766 2233 3446665666666667888999999999999887443
No 473
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=35.64 E-value=4.8e+02 Score=26.36 Aligned_cols=28 Identities=7% Similarity=-0.290 Sum_probs=17.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 040576 426 GYGMHGQGEKALEMFMEMEKRGPTPNDA 453 (641)
Q Consensus 426 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 453 (641)
.+.+.+++..|.++|+++....+.|+..
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~ 166 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNH 166 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhh
Confidence 4556667777777777776665444433
No 474
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=35.24 E-value=5.5e+02 Score=26.88 Aligned_cols=240 Identities=10% Similarity=0.031 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC------CHHHHHHHHHHHHHcC-CCC-chhHHHHHHHHHHhcCCHHH
Q 040576 333 CECLRLFDRMIRGDAKPNEASLMSVLTACANMG------VIDIGQWIHSYIQKCR-IKP-DVLLSTSLLTMYAKCGVMDL 404 (641)
Q Consensus 333 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g------~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~ 404 (641)
+....+|++..+ ..|+...|...|..|...- .+.....+++.....+ ..+ ....|..+.-+++......+
T Consensus 299 s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 334466776665 2455556666666654432 2333344444444432 222 35566666666666655443
Q ss_pred -HHHHHhhcCCCChhHHHHHHHHHHHc-CChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc-HHHH--HHHHHHh
Q 040576 405 -ARNVFDNMTEKNVVSWNSMIMGYGMH-GQGEK-ALEMFMEMEKRGPTPNDATFICVLSACTHAGM-VLEG--WWYFDLM 478 (641)
Q Consensus 405 -A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a--~~~~~~~ 478 (641)
|..+..+....+...|-.-+...... .+++- -..+|......-..+-...+.... .|+ .+.. ..++...
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 44444455556666665555444422 12221 122233333321122222333322 122 1111 1222223
Q ss_pred HHhhCCCCchHH-HHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCC
Q 040576 479 QRIYKIEPKVEH-YGCMVDLLGRAGLMRDSEELVSKLP--MEAGPALWGALLSAC--STHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 479 ~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
.+ -..|+..+ -+.+++-+.+.|-.++|...+.... -+|+...+..++..- ...-+..-+..+|+.+..-...+
T Consensus 452 ~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 452 LS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD 529 (568)
T ss_pred HH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC
Confidence 22 23355433 3567888889999999999998872 245666777776542 22334777888899888765577
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 554 PGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
+..|......=...|.-+.+-.++.++.
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 8888887777678888888887776653
No 475
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=35.03 E-value=83 Score=19.47 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=22.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 555 GPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
.+|..|+.+-...+++++|.+=+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888888889999988888877643
No 476
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.60 E-value=2.1e+02 Score=24.22 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=21.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 040576 423 MIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAG 466 (641)
Q Consensus 423 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 466 (641)
++..+...++.-.|.++++++.+.+...+..|....+..+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444444444555555555555554444444444444444443
No 477
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.22 E-value=2.6e+02 Score=25.87 Aligned_cols=22 Identities=23% Similarity=-0.000 Sum_probs=17.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCC
Q 040576 427 YGMHGQGEKALEMFMEMEKRGP 448 (641)
Q Consensus 427 ~~~~~~~~~A~~~~~~m~~~g~ 448 (641)
+...|+++.|+++.+-+++.|.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCC
Confidence 4567889999999998888874
No 478
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.10 E-value=2e+02 Score=24.45 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=41.1
Q ss_pred HHHhcCCCCCcchHHHHHHHHhcC-CCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 040576 147 KMMAKFVEHNHYTFPLLGKVCAGI-RSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEV 208 (641)
Q Consensus 147 ~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 208 (641)
.+++.|++++..-.. ++..+... +..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 566777776655333 33445443 46778999999999888777777666667777776643
No 479
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.08 E-value=8.1e+02 Score=28.51 Aligned_cols=50 Identities=14% Similarity=0.049 Sum_probs=28.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
++-|-..+.|+.+=+-.++++.++.|.. .--.+=...|+|+.|++-+.++
T Consensus 878 l~VAq~SQkDPKEYLPfL~~L~~l~~~~-----rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 878 LMVAQQSQKDPKEYLPFLQELQKLPPLY-----RRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHHhccChHHHHHHHHHHHhCChhh-----eeeeHhhhhCCHHHHHHHHHhh
Confidence 3334445566666666666666665432 1222334567888888766543
No 480
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=33.90 E-value=94 Score=29.85 Aligned_cols=79 Identities=8% Similarity=0.063 Sum_probs=51.0
Q ss_pred CCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 040576 484 IEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGA-LLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLL 560 (641)
Q Consensus 484 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 560 (641)
+.-|+..|...+.-..+.|.+.+.-.++.+. ...|. ...|-. --.-+..+++++.+..++.+.++++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3345555655555555556666666666655 22333 334432 22236678999999999999999999999877665
Q ss_pred HH
Q 040576 561 SN 562 (641)
Q Consensus 561 ~~ 562 (641)
..
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 481
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=33.89 E-value=3.5e+02 Score=30.96 Aligned_cols=134 Identities=7% Similarity=-0.063 Sum_probs=62.6
Q ss_pred HhcCCHHHHHHHHhcCCCCCeeH--HHHHHHHHHhCCChHHHHHHHhhCCCCC---chhHHHHHHHHhcCCChHHHHHHH
Q 040576 203 SVCGEVLDARKVFEDGPVWDLVT--WNSMIDGYVKNREVGFARELFDFMPERD---IFTWNSMISGYVDVGDMEAANGLF 277 (641)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~ll~~~~~~g~~~~a~~~~ 277 (641)
+..|+.+-...+++.+..+|... -.+.+...+..|+.+-+.-+++.-..++ ..-. +-+...+..|+.+-+.-++
T Consensus 533 a~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~-TpL~~A~~~g~~~iv~~L~ 611 (823)
T PLN03192 533 ASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGN-TALWNAISAKHHKIFRILY 611 (823)
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCC-CHHHHHHHhCCHHHHHHHH
Confidence 44667666666666654443322 1223344445566555544444332222 1122 2233334455555555554
Q ss_pred hhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCC---cchHHHHHHHHHHcCChHHHHHH
Q 040576 278 DLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRN---VVSWNILLALYVRCKDYCECLRL 338 (641)
Q Consensus 278 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 338 (641)
+.....+.......+...+..|+.+-+..+++.-...| ..-.+.+. ..+..|+.+-+.-+
T Consensus 612 ~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh-~A~~~g~~~iv~~L 674 (823)
T PLN03192 612 HFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ-VAMAEDHVDMVRLL 674 (823)
T ss_pred hcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHCCcHHHHHHH
Confidence 43322222223345566677788877777776553322 22223332 33455655444333
No 482
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.80 E-value=1.7e+02 Score=20.78 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=28.8
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040576 415 KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTH 464 (641)
Q Consensus 415 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 464 (641)
+....++.++..+++..-.++++..+.++.+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445566666666666666777777777777663 355555555555544
No 483
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=33.78 E-value=2.8e+02 Score=27.17 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=48.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC-------CCChhHH--HHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHH-HHH
Q 040576 392 LLTMYAKCGVMDLARNVFDNMT-------EKNVVSW--NSMIMGYGMHGQGEKALEMFMEMEK-----RGPTPNDA-TFI 456 (641)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~--~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~-~~~ 456 (641)
++...-+.++.++|+++++++. +|+.+.| ..++..+...|+.+++.+++.+... -|+.|+.. .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 3344445567777777777665 2555544 4456667788888888888877766 57777554 455
Q ss_pred HHHHHHH-hhccHH
Q 040576 457 CVLSACT-HAGMVL 469 (641)
Q Consensus 457 ~ll~~~~-~~g~~~ 469 (641)
.+-.-|. ..|++.
T Consensus 161 ~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHhHH
Confidence 5554443 344443
No 484
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=33.68 E-value=7.3e+02 Score=27.85 Aligned_cols=108 Identities=9% Similarity=0.053 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCCHHHHHHHHhh-------cCCCC
Q 040576 346 DAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIK--PDVLLSTSLLTMYAKCGVMDLARNVFDN-------MTEKN 416 (641)
Q Consensus 346 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~~~ 416 (641)
++..+......++..+ .|+...+..+++.+...... .+... =..+.+.+.+.. -....
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It~~~~~e~l~~~~~~ydk~gd~h 258 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------ITLAIAEESIQQRAVLYDKEGDAH 258 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------ccHHHHHHHHHHhhhhcccCCCCC
Confidence 4556666666666543 78888888888876542110 00000 011222333222 11122
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc
Q 040576 417 VVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGM 467 (641)
Q Consensus 417 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 467 (641)
.....+++++. +.++++.|+.++.+|.+.|..|....-..++.+....|.
T Consensus 259 yd~Isa~~ksi-rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 259 FDTISAFIKSL-RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 23334444443 468899999999999999988765554444445444453
No 485
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=33.58 E-value=2.7e+02 Score=22.88 Aligned_cols=59 Identities=20% Similarity=0.130 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALW-GALLSACSTHSNSELGKIVAQHL 546 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~ 546 (641)
..+..++.-++.-.|..++|.++++..+-.++-... ..++..|....+.++...+-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344556667777778888888888777644443333 35777777777766666555443
No 486
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.29 E-value=4.1e+02 Score=26.86 Aligned_cols=137 Identities=10% Similarity=0.049 Sum_probs=81.8
Q ss_pred hhHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--------HHHhhccHHHHHHHHHHhHHhhCCCC
Q 040576 417 VVSWNSMIMGY--GMHGQGEKALEMFMEMEKRGPTPNDATFICVLS--------ACTHAGMVLEGWWYFDLMQRIYKIEP 486 (641)
Q Consensus 417 ~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--------~~~~~g~~~~a~~~~~~~~~~~~~~p 486 (641)
+.+|-.++-.+ ..++++.+|..+-+.....-..-|..|+..+.. ++...|+...-...+........+.-
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 34555544443 345788888888777665433345666654432 22345666566666655554333333
Q ss_pred c----hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 487 K----VEHYGCMVDLLGRAGLMRDSEELVSKLPM--EAGPALWGA----LLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 487 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
| ....|+|++.|...+.++.|..++.+.+. ..+...|.. +.....-.+++..|.+.+-.+....|.+
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 3 34566777888888888999888888742 111112222 2223455678888888888888888874
No 487
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.22 E-value=5e+02 Score=28.08 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=25.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
-+|....+.+.|.++++++.+.+|.++-.-..+..+....|+-++|+..+...
T Consensus 402 ~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 402 VCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33444444555555555555555554444444444444445555555444443
No 488
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.04 E-value=7.6e+02 Score=27.90 Aligned_cols=303 Identities=12% Similarity=0.054 Sum_probs=134.7
Q ss_pred HHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 040576 262 SGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDR 341 (641)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 341 (641)
..|...|++++|+++-+.-.+.=..++..-.+.|.+.+++..|.+++-++ ..++..+.--+....+.+ +++.|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHH
Confidence 44566777777777655441111334455556677777888888887776 233444444555555555 3333322
Q ss_pred HHHCCCCCCHHHHHHH-----HHHH-HccCCHH----HHHHHHHH--------HHH-cCCCCchhHHHHHHHHHHhcCCH
Q 040576 342 MIRGDAKPNEASLMSV-----LTAC-ANMGVID----IGQWIHSY--------IQK-CRIKPDVLLSTSLLTMYAKCGVM 402 (641)
Q Consensus 342 m~~~g~~p~~~~~~~l-----l~~~-~~~g~~~----~a~~~~~~--------~~~-~~~~~~~~~~~~li~~~~~~g~~ 402 (641)
=+-..++|...+-..+ +..+ .+.++++ ++..-++. +.. .....+.....+........|+.
T Consensus 441 KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~ 520 (911)
T KOG2034|consen 441 KKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQ 520 (911)
T ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCH
Confidence 2222344544433222 2222 1222222 11111110 000 00111222222333344445555
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhh
Q 040576 403 DLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIY 482 (641)
Q Consensus 403 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 482 (641)
+....+-.-| ..|..++.-+.+.+.+++|++++..-. ++..+.-.--. .....+.+....|.....
T Consensus 521 e~ll~fA~l~-----~d~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~-Li~~~p~~tV~~wm~~~d-- 586 (911)
T KOG2034|consen 521 EELLQFANLI-----KDYEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPE-LITHSPKETVSAWMAQKD-- 586 (911)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhH-HHhcCcHHHHHHHHHccc--
Confidence 5554444333 235556666667777777776665431 22211111111 112344444455544433
Q ss_pred CCCCchHHHHHHHHHHhhcC---CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 040576 483 KIEPKVEHYGCMVDLLGRAG---LMRDSEELVSKL---PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGP 556 (641)
Q Consensus 483 ~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 556 (641)
..| ......++..+.+.+ ....+...++-. ...-++...+.++..|..+.+-+ ....++.+.....+...-
T Consensus 587 -~~~-~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~-ll~~le~~~~~~~~~~YD 663 (911)
T KOG2034|consen 587 -LDP-NRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD-LLLYLEIIKFMKSRVHYD 663 (911)
T ss_pred -cCc-hhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc-hHHHHHHHhhccccceec
Confidence 222 222233344444332 233333333221 22456677777777776655433 333333333333332222
Q ss_pred HHHHHHHHHhcCC------hHHHHHHHHHhhhCCCc
Q 040576 557 YVLLSNIYASEGK------WDEVENLRRIMKEKELE 586 (641)
Q Consensus 557 ~~~l~~~~~~~g~------~~~A~~~~~~m~~~~~~ 586 (641)
...-...|.+.+. ..-+.+++..+.+...+
T Consensus 664 l~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~ 699 (911)
T KOG2034|consen 664 LDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQ 699 (911)
T ss_pred HHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhh
Confidence 3334455555553 34555666666555444
No 489
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=33.03 E-value=1.7e+02 Score=28.17 Aligned_cols=64 Identities=6% Similarity=0.001 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH-HHHHHHhcCChHHHHHHHHHh
Q 040576 517 EAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVL-LSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m 580 (641)
..|+..|...+..-.+.|-+.+...++..+....|.|...|.. -.--|...++++.+..++.+.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~g 168 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKG 168 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhh
Confidence 3567778877777778888999999999999999999988876 344577889999999998887
No 490
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.55 E-value=1.9e+02 Score=27.20 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=7.1
Q ss_pred HHHhhcCCHHHHHHHHHh
Q 040576 496 DLLGRAGLMRDSEELVSK 513 (641)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~ 513 (641)
..|.+.|++++|.++|+.
T Consensus 186 ~ey~~~g~~~~A~~~l~~ 203 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEP 203 (247)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 333344444444444333
No 491
>PF15469 Sec5: Exocyst complex component Sec5
Probab=31.43 E-value=3.7e+02 Score=23.73 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=13.8
Q ss_pred HHHHHHhhccHHHHHHHHHHhHH
Q 040576 458 VLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 458 ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
-+.-|.+.|+++.+...|.++..
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 34455566666666666666655
No 492
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.27 E-value=1.1e+02 Score=24.55 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=33.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccH
Q 040576 423 MIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMV 468 (641)
Q Consensus 423 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 468 (641)
++..+...+..-.|.++++++.+.+..++..|....+..+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555555666677888888888887777888777777777777654
No 493
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=30.87 E-value=33 Score=27.75 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.5
Q ss_pred ceEEEEeeeeecccccccCCCCchhhHHHHH
Q 040576 590 GSSLVHPGEFASESIVENCPPHRKCIVYSML 620 (641)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l 620 (641)
||+|+.++.|+++ ...||.... ++.++
T Consensus 2 ~~~w~~~h~F~sg--d~shp~~~~--~~~~~ 28 (116)
T PF14432_consen 2 GCSWIEVHSFVSG--DRSHPQSEL--INKMK 28 (116)
T ss_pred CCCccceEEEEeC--CCcCccHHH--HHHHH
Confidence 7999988999999 999999855 55544
No 494
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.84 E-value=2e+02 Score=25.06 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 040576 433 GEKALEMFMEMEKRGPTPNDATFICVLSACTHAG 466 (641)
Q Consensus 433 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 466 (641)
.-.|.++++++.+.+..++..|....|..+.+.|
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3344444444444444444444333344443333
No 495
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.73 E-value=4.9e+02 Score=24.98 Aligned_cols=139 Identities=13% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHcC--------CCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----hhHHHHHHHHHHHcCChHHHHHH
Q 040576 373 IHSYIQKCR--------IKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKN-----VVSWNSMIMGYGMHGQGEKALEM 439 (641)
Q Consensus 373 ~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~ 439 (641)
++..+-+.| ++.|...+|.|+.- +..++++--+-.++..+.| ..+|..+..-|++.++.+.+.++
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHC----CCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHh-hcCCHHHHHHHHHh
Q 040576 440 FMEMEKR----GPTPNDA-TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLG-RAGLMRDSEELVSK 513 (641)
Q Consensus 440 ~~~m~~~----g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~ 513 (641)
..+.... |.+.|.. +-..+.-.|....-+++-++..+.|.++.|--....-|...-..+. ...++.+|-.++..
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
No 496
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.62 E-value=6.7e+02 Score=26.49 Aligned_cols=67 Identities=19% Similarity=0.120 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcC---CC----CCchHHHHHHHHHhcCC-hHHHHHHHHHhhhC
Q 040576 517 EAGPALWGALLSA--CSTHSNSELGKIVAQHLMELE---PR----DPGPYVLLSNIYASEGK-WDEVENLRRIMKEK 583 (641)
Q Consensus 517 ~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~ 583 (641)
.+|......++.+ ....|+.+.|...++...+.. .. -|.+++.++..|...|. ..++..++.++++-
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 5666666666655 567899999999999887432 11 25578999999999988 99999999999764
No 497
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.48 E-value=16 Score=35.41 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=57.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEE
Q 040576 530 CSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLV 594 (641)
Q Consensus 530 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 594 (641)
....|.++.|++.+..+++++|.....|..-+.++.+.+++..|++-+....+.+.....++-|-
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr 188 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR 188 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence 34568899999999999999999999999999999999999999999999987777766666665
No 498
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.44 E-value=1.8e+02 Score=27.37 Aligned_cols=51 Identities=6% Similarity=-0.131 Sum_probs=24.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhcCChHHHHHHH
Q 040576 527 LSACSTHSNSELGKIVAQHLMELEPR------DPGPYVLLSNIYASEGKWDEVENLR 577 (641)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (641)
..-|...|++++|..+++.+...-.. ...+...+..++.+.|+.++.+.+.
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33455556666666665555332111 1123444455555555555555543
No 499
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=30.11 E-value=80 Score=30.19 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=26.7
Q ss_pred HhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 463 THAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 463 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
.+.|+.++|..+|+.+.. +.|+ +.....+.......+++-+|-.+|-+.
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 356777777777777665 3443 344444444444445555565555444
No 500
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.00 E-value=6e+02 Score=25.76 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=31.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHHHHc
Q 040576 325 LYVRCKDYCECLRLFDRMIRGDAKPNEA--SLMSVLTACA--NMGVIDIGQWIHSYIQKC 380 (641)
Q Consensus 325 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 380 (641)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888887775 444443 2333333333 234566676666665543
Done!