Query 040576
Match_columns 641
No_of_seqs 664 out of 4267
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 15:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-44 6.4E-49 391.0 35.1 490 100-625 63-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1E-39 3.5E-44 353.8 32.3 473 86-565 81-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-27 5.3E-32 243.4 38.2 365 231-628 7-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-26 4.9E-31 236.2 38.4 368 165-569 7-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 4.7E-27 1.6E-31 243.9 22.2 184 317-501 27-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 5.3E-26 1.8E-30 236.0 22.5 200 333-533 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.8E-23 6.2E-28 221.6 34.0 278 317-625 187-494 (514)
8 3fp2_A TPR repeat-containing p 99.9 9.4E-23 3.2E-27 217.4 35.9 419 121-580 25-488 (537)
9 2gw1_A Mitochondrial precursor 99.9 8E-23 2.8E-27 216.6 32.4 431 123-561 8-490 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 3.3E-22 1.1E-26 208.1 34.5 302 254-563 26-372 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 2.1E-22 7.2E-27 209.6 32.3 301 222-528 25-371 (450)
12 3fp2_A TPR repeat-containing p 99.9 6E-22 2.1E-26 211.2 35.2 418 99-557 34-499 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.4E-20 8.3E-25 187.4 34.9 314 288-632 6-358 (359)
14 1xi4_A Clathrin heavy chain; a 99.8 1.4E-16 4.9E-21 174.7 50.6 352 190-580 983-1342(1630)
15 3hym_B Cell division cycle pro 99.8 6.5E-19 2.2E-23 174.8 29.7 286 314-630 20-321 (330)
16 3ieg_A DNAJ homolog subfamily 99.8 1.4E-18 4.9E-23 174.4 32.5 306 258-567 7-353 (359)
17 1b89_A Protein (clathrin heavy 99.8 3.5E-19 1.2E-23 175.9 21.8 284 101-409 14-305 (449)
18 2xm6_A Protein corresponding t 99.8 3.5E-17 1.2E-21 171.9 38.5 363 191-566 38-452 (490)
19 3hym_B Cell division cycle pro 99.8 1.1E-17 3.6E-22 166.0 30.9 286 283-571 20-322 (330)
20 1fch_A Peroxisomal targeting s 99.8 3.6E-18 1.2E-22 172.3 25.3 278 298-580 38-356 (368)
21 1fch_A Peroxisomal targeting s 99.8 1.5E-18 5.1E-23 175.2 22.3 312 299-634 15-350 (368)
22 1xi4_A Clathrin heavy chain; a 99.8 2.4E-15 8.2E-20 165.2 47.3 413 123-578 987-1440(1630)
23 1b89_A Protein (clathrin heavy 99.8 3.1E-18 1.1E-22 169.2 21.1 285 204-515 15-309 (449)
24 2xm6_A Protein corresponding t 99.8 4.5E-16 1.5E-20 163.4 39.1 350 220-584 36-433 (490)
25 2ooe_A Cleavage stimulation fa 99.8 7.3E-16 2.5E-20 163.6 40.2 406 154-585 10-494 (530)
26 3mkr_A Coatomer subunit epsilo 99.8 2.5E-17 8.6E-22 159.5 23.6 245 294-580 8-261 (291)
27 4eqf_A PEX5-related protein; a 99.8 2.1E-17 7E-22 166.7 21.3 257 358-631 72-344 (365)
28 4g1t_A Interferon-induced prot 99.8 1E-16 3.5E-21 167.7 27.0 363 191-594 50-470 (472)
29 4eqf_A PEX5-related protein; a 99.8 5.2E-17 1.8E-21 163.7 22.7 261 316-580 65-353 (365)
30 3mkr_A Coatomer subunit epsilo 99.8 6.6E-16 2.3E-20 149.5 29.4 233 262-505 7-251 (291)
31 3cv0_A Peroxisome targeting si 99.7 1.1E-16 3.6E-21 158.5 22.7 260 317-581 22-313 (327)
32 2ooe_A Cleavage stimulation fa 99.7 1.2E-14 4.1E-19 154.1 37.4 408 118-552 10-495 (530)
33 3cv0_A Peroxisome targeting si 99.7 7E-16 2.4E-20 152.6 22.3 253 352-634 22-306 (327)
34 3uq3_A Heat shock protein STI1 99.7 2.3E-15 7.7E-20 143.3 24.2 215 354-582 8-235 (258)
35 4g1t_A Interferon-induced prot 99.7 5.3E-15 1.8E-19 154.6 28.9 378 154-561 48-471 (472)
36 2pl2_A Hypothetical conserved 99.7 2.7E-15 9.2E-20 138.7 19.6 195 383-581 2-212 (217)
37 3spa_A Mtrpol, DNA-directed RN 99.6 2.1E-16 7.2E-21 168.3 9.6 147 285-431 127-286 (1134)
38 3spa_A Mtrpol, DNA-directed RN 99.6 3.2E-16 1.1E-20 167.0 10.4 125 385-510 126-258 (1134)
39 3uq3_A Heat shock protein STI1 99.6 1.3E-14 4.3E-19 138.0 19.4 235 317-563 6-256 (258)
40 2q7f_A YRRB protein; TPR, prot 99.6 8E-15 2.8E-19 138.1 16.8 215 385-628 22-241 (243)
41 3u4t_A TPR repeat-containing p 99.6 3.4E-14 1.2E-18 136.4 20.8 238 359-627 11-268 (272)
42 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.3E-14 1.8E-18 135.2 21.7 241 328-577 17-269 (275)
43 2pl2_A Hypothetical conserved 99.6 3.1E-14 1.1E-18 131.5 18.8 191 415-636 3-207 (217)
44 3e4b_A ALGK; tetratricopeptide 99.6 1.9E-14 6.5E-19 148.7 18.1 376 163-581 9-419 (452)
45 3u4t_A TPR repeat-containing p 99.6 8.5E-14 2.9E-18 133.6 21.0 244 289-568 7-269 (272)
46 2vq2_A PILW, putative fimbrial 99.6 1.6E-13 5.5E-18 127.3 21.7 194 385-580 7-208 (225)
47 3e4b_A ALGK; tetratricopeptide 99.6 1.1E-13 3.6E-18 143.1 22.5 340 232-586 12-390 (452)
48 1ouv_A Conserved hypothetical 99.6 6.9E-13 2.4E-17 127.4 26.5 187 389-584 41-252 (273)
49 2ho1_A Type 4 fimbrial biogene 99.6 1.6E-13 5.3E-18 130.1 21.6 193 386-580 37-235 (252)
50 2h6f_A Protein farnesyltransfe 99.6 1.3E-13 4.5E-18 137.9 20.7 243 354-627 100-366 (382)
51 3sf4_A G-protein-signaling mod 99.6 9E-14 3.1E-18 141.9 19.6 293 319-632 12-365 (406)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.1E-14 3.1E-18 133.5 18.2 241 362-636 16-268 (275)
53 2h6f_A Protein farnesyltransfe 99.6 2.5E-13 8.5E-18 136.0 21.1 244 317-567 98-366 (382)
54 1ouv_A Conserved hypothetical 99.6 1.6E-12 5.5E-17 124.8 25.8 227 315-554 5-256 (273)
55 2ho1_A Type 4 fimbrial biogene 99.5 1.8E-12 6.2E-17 122.7 24.0 200 356-558 42-247 (252)
56 4a1s_A PINS, partner of inscut 99.5 2.5E-13 8.6E-18 139.0 19.2 260 321-582 53-371 (411)
57 2q7f_A YRRB protein; TPR, prot 99.5 1.7E-13 5.8E-18 128.9 16.4 206 358-567 30-240 (243)
58 3vtx_A MAMA; tetratricopeptide 99.5 7.6E-13 2.6E-17 118.7 19.8 166 416-584 4-171 (184)
59 2vq2_A PILW, putative fimbrial 99.5 3.2E-12 1.1E-16 118.4 23.4 204 354-560 11-222 (225)
60 3ro2_A PINS homolog, G-protein 99.5 7.7E-13 2.6E-17 130.9 19.7 261 321-583 10-332 (338)
61 4abn_A Tetratricopeptide repea 99.5 3.7E-13 1.3E-17 140.0 17.9 208 367-580 84-318 (474)
62 4i17_A Hypothetical protein; T 99.5 1.3E-12 4.3E-17 121.8 17.9 204 385-625 6-225 (228)
63 3sf4_A G-protein-signaling mod 99.5 9.7E-13 3.3E-17 134.2 18.2 284 288-571 12-364 (406)
64 4abn_A Tetratricopeptide repea 99.5 4.7E-13 1.6E-17 139.2 16.0 210 330-545 82-317 (474)
65 4a1s_A PINS, partner of inscut 99.4 1.7E-12 5.7E-17 132.9 16.6 263 290-552 53-375 (411)
66 4e6h_A MRNA 3'-END-processing 99.4 9.9E-10 3.4E-14 117.3 37.3 414 118-554 63-575 (679)
67 3ulq_A Response regulator aspa 99.4 5.7E-12 1.9E-16 127.6 19.1 222 360-582 112-367 (383)
68 3ro2_A PINS homolog, G-protein 99.4 1.2E-11 4E-16 122.3 19.8 262 291-552 11-335 (338)
69 4gyw_A UDP-N-acetylglucosamine 99.4 6.1E-12 2.1E-16 136.0 18.6 163 416-583 8-174 (723)
70 3vtx_A MAMA; tetratricopeptide 99.4 1.1E-11 3.9E-16 110.9 17.4 167 385-554 4-175 (184)
71 2ond_A Cleavage stimulation fa 99.4 4.6E-11 1.6E-15 116.7 22.1 235 317-555 9-276 (308)
72 3ulq_A Response regulator aspa 99.4 1.9E-11 6.4E-16 123.8 19.8 229 322-550 109-369 (383)
73 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-12 4.7E-17 127.7 10.0 235 317-582 28-306 (311)
74 2ond_A Cleavage stimulation fa 99.4 2.5E-10 8.5E-15 111.5 25.6 245 368-621 33-304 (308)
75 4e6h_A MRNA 3'-END-processing 99.3 3.3E-09 1.1E-13 113.3 35.5 434 135-587 46-574 (679)
76 3as5_A MAMA; tetratricopeptide 99.3 2.9E-11 9.8E-16 108.0 16.9 161 420-583 11-173 (186)
77 1hz4_A MALT regulatory protein 99.3 8.3E-10 2.8E-14 111.1 29.6 261 322-582 20-321 (373)
78 3nf1_A KLC 1, kinesin light ch 99.3 9.7E-12 3.3E-16 121.6 12.9 238 285-552 27-310 (311)
79 4gyw_A UDP-N-acetylglucosamine 99.3 2.2E-11 7.6E-16 131.6 15.6 157 449-634 5-165 (723)
80 3q15_A PSP28, response regulat 99.3 1.1E-10 3.7E-15 117.8 19.5 221 361-582 111-364 (378)
81 3qky_A Outer membrane assembly 99.3 2.7E-10 9.3E-15 108.3 21.0 206 385-634 14-252 (261)
82 4i17_A Hypothetical protein; T 99.3 1.9E-10 6.5E-15 106.9 19.0 205 349-564 5-224 (228)
83 3as5_A MAMA; tetratricopeptide 99.3 2.9E-10 9.8E-15 101.4 19.4 168 386-556 8-180 (186)
84 3q15_A PSP28, response regulat 99.2 1.3E-09 4.5E-14 109.8 24.7 228 321-549 106-365 (378)
85 4ga2_A E3 SUMO-protein ligase 99.2 1.4E-11 4.8E-16 106.0 8.3 142 458-628 3-148 (150)
86 3mv2_B Coatomer subunit epsilo 99.2 1.8E-09 6.3E-14 102.2 22.4 236 323-580 20-279 (310)
87 1qqe_A Vesicular transport pro 99.2 2.1E-10 7.2E-15 111.0 15.4 200 366-580 32-266 (292)
88 1hz4_A MALT regulatory protein 99.2 1.3E-09 4.4E-14 109.7 20.6 261 291-552 20-325 (373)
89 4gco_A Protein STI-1; structur 99.1 4.1E-10 1.4E-14 93.3 12.6 114 484-623 8-124 (126)
90 3edt_B KLC 2, kinesin light ch 99.1 7.2E-10 2.5E-14 106.3 15.1 221 362-582 12-280 (283)
91 1qqe_A Vesicular transport pro 99.1 1.4E-09 4.7E-14 105.2 16.8 171 387-557 78-277 (292)
92 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.8E-09 2E-13 96.5 18.9 183 387-587 5-217 (225)
93 2pzi_A Probable serine/threoni 99.1 1.3E-09 4.3E-14 118.5 15.0 144 418-566 434-580 (681)
94 3qou_A Protein YBBN; thioredox 99.1 1.6E-09 5.5E-14 104.4 14.1 151 453-632 118-273 (287)
95 2fo7_A Synthetic consensus TPR 99.1 4.7E-09 1.6E-13 87.7 15.2 125 457-583 6-132 (136)
96 3qky_A Outer membrane assembly 99.0 5.6E-09 1.9E-13 99.1 17.1 202 349-572 13-250 (261)
97 4ga2_A E3 SUMO-protein ligase 99.0 2.3E-10 7.8E-15 98.3 6.5 142 423-569 3-149 (150)
98 2pzi_A Probable serine/threoni 99.0 1.5E-09 5.1E-14 118.0 13.8 166 428-624 402-578 (681)
99 2vgx_A Chaperone SYCD; alterna 99.0 1.4E-09 4.8E-14 93.0 10.9 97 484-580 16-115 (148)
100 3edt_B KLC 2, kinesin light ch 99.0 7.4E-09 2.5E-13 99.2 16.9 197 353-549 45-281 (283)
101 3rjv_A Putative SEL1 repeat pr 99.0 2.1E-08 7.1E-13 91.7 18.8 172 405-585 5-199 (212)
102 3mv2_B Coatomer subunit epsilo 99.0 3.8E-08 1.3E-12 93.2 20.7 237 297-555 25-288 (310)
103 3qou_A Protein YBBN; thioredox 99.0 8.1E-09 2.8E-13 99.4 16.3 176 402-581 102-282 (287)
104 2fo7_A Synthetic consensus TPR 99.0 2E-08 6.9E-13 83.8 16.6 133 418-553 2-136 (136)
105 2vsy_A XCC0866; transferase, g 99.0 7.8E-09 2.7E-13 110.3 16.4 151 431-585 3-159 (568)
106 3gyz_A Chaperone protein IPGC; 99.0 5.6E-09 1.9E-13 89.2 12.0 99 484-582 31-132 (151)
107 3urz_A Uncharacterized protein 98.9 2.1E-08 7.2E-13 91.4 16.3 119 458-580 60-183 (208)
108 2ifu_A Gamma-SNAP; membrane fu 98.9 1.5E-08 5.2E-13 98.7 16.0 180 394-576 44-254 (307)
109 2r5s_A Uncharacterized protein 98.9 7E-09 2.4E-13 91.8 12.2 155 423-581 12-171 (176)
110 2r5s_A Uncharacterized protein 98.9 5.1E-09 1.7E-13 92.7 11.2 151 455-634 9-164 (176)
111 3urz_A Uncharacterized protein 98.9 2E-08 6.7E-13 91.6 15.0 128 421-553 58-190 (208)
112 2xcb_A PCRH, regulatory protei 98.9 1.6E-08 5.6E-13 85.7 12.5 97 484-580 13-112 (142)
113 2ifu_A Gamma-SNAP; membrane fu 98.9 2.7E-08 9.3E-13 96.9 15.4 196 364-581 4-222 (307)
114 3upv_A Heat shock protein STI1 98.9 1.5E-08 5.2E-13 83.9 11.0 113 488-626 4-124 (126)
115 2vsy_A XCC0866; transferase, g 98.8 5.9E-08 2E-12 103.5 17.6 159 399-561 2-169 (568)
116 2e2e_A Formate-dependent nitri 98.8 1.8E-08 6.1E-13 89.2 10.6 116 463-580 21-141 (177)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.8 7.9E-08 2.7E-12 87.8 15.3 127 420-552 9-153 (213)
118 3dra_A Protein farnesyltransfe 98.8 3.8E-07 1.3E-11 87.4 20.4 147 431-580 124-284 (306)
119 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.5E-07 5E-12 86.9 17.2 178 417-634 4-204 (225)
120 4gco_A Protein STI-1; structur 98.8 4E-08 1.4E-12 81.2 11.9 113 448-563 8-124 (126)
121 2lni_A Stress-induced-phosphop 98.8 4.7E-08 1.6E-12 81.4 12.5 115 488-628 16-132 (133)
122 1na0_A Designed protein CTPR3; 98.8 7.8E-08 2.7E-12 78.9 13.1 92 489-580 10-103 (125)
123 2uy1_A Cleavage stimulation fa 98.8 4.4E-06 1.5E-10 86.5 28.5 346 171-548 28-412 (493)
124 2vyi_A SGTA protein; chaperone 98.8 1E-07 3.5E-12 79.0 13.2 116 488-629 12-129 (131)
125 3u3w_A Transcriptional activat 98.8 6.2E-07 2.1E-11 86.5 20.4 161 422-582 80-265 (293)
126 1elw_A TPR1-domain of HOP; HOP 98.8 1.3E-07 4.5E-12 76.6 13.2 111 488-624 4-116 (118)
127 2qfc_A PLCR protein; TPR, HTH, 98.8 2.1E-07 7.3E-12 89.8 16.8 163 419-581 77-264 (293)
128 3q49_B STIP1 homology and U bo 98.7 8.3E-08 2.8E-12 80.6 12.1 119 486-630 7-132 (137)
129 2fbn_A 70 kDa peptidylprolyl i 98.7 1.7E-08 5.7E-13 91.3 7.9 120 489-634 39-176 (198)
130 3rkv_A Putative peptidylprolyl 98.7 5.3E-08 1.8E-12 84.6 10.8 89 520-634 63-152 (162)
131 3dra_A Protein farnesyltransfe 98.7 4.3E-06 1.5E-10 80.1 24.6 226 331-562 48-301 (306)
132 3sz7_A HSC70 cochaperone (SGT) 98.7 1.2E-07 4.1E-12 82.6 12.8 93 488-580 11-105 (164)
133 3rjv_A Putative SEL1 repeat pr 98.7 1.2E-06 4E-11 79.9 19.9 170 304-483 5-198 (212)
134 2c2l_A CHIP, carboxy terminus 98.7 2.3E-08 7.9E-13 95.8 8.8 192 385-583 3-199 (281)
135 4f3v_A ESX-1 secretion system 98.7 1.8E-07 6.1E-12 87.5 14.3 179 398-581 18-235 (282)
136 2hr2_A Hypothetical protein; a 98.7 1.5E-08 5.1E-13 85.5 6.0 85 522-632 59-154 (159)
137 2dba_A Smooth muscle cell asso 98.7 2.2E-07 7.5E-12 79.0 13.6 112 487-624 27-143 (148)
138 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.3E-07 2.5E-11 81.3 17.9 131 389-520 9-154 (213)
139 1a17_A Serine/threonine protei 98.7 2.4E-07 8.3E-12 80.5 14.0 126 454-581 15-144 (166)
140 1p5q_A FKBP52, FK506-binding p 98.7 9.3E-08 3.2E-12 94.2 11.5 146 431-581 127-292 (336)
141 1p5q_A FKBP52, FK506-binding p 98.7 1.8E-07 6.3E-12 92.1 13.0 145 401-548 128-293 (336)
142 2lni_A Stress-induced-phosphop 98.6 3.5E-07 1.2E-11 76.0 12.7 115 452-569 16-133 (133)
143 1na0_A Designed protein CTPR3; 98.6 5.2E-07 1.8E-11 73.8 13.6 115 452-568 9-125 (125)
144 2vyi_A SGTA protein; chaperone 98.6 3.7E-07 1.3E-11 75.5 12.6 117 452-570 12-130 (131)
145 1hxi_A PEX5, peroxisome target 98.6 1.1E-07 3.9E-12 77.8 9.1 94 490-583 19-114 (121)
146 4gcn_A Protein STI-1; structur 98.6 2.3E-07 8E-12 76.7 11.0 94 488-581 8-110 (127)
147 3u3w_A Transcriptional activat 98.6 7.2E-06 2.5E-10 79.0 23.0 202 339-549 34-266 (293)
148 4f3v_A ESX-1 secretion system 98.6 7.2E-07 2.4E-11 83.4 14.5 137 420-561 105-248 (282)
149 1elr_A TPR2A-domain of HOP; HO 98.6 3.6E-07 1.2E-11 75.6 11.2 117 488-631 4-129 (131)
150 1a17_A Serine/threonine protei 98.6 5.9E-07 2E-11 78.0 13.0 119 488-632 13-135 (166)
151 2xev_A YBGF; tetratricopeptide 98.5 3.9E-07 1.3E-11 75.4 10.3 107 493-625 7-121 (129)
152 3gyz_A Chaperone protein IPGC; 98.5 1.7E-07 6E-12 79.8 7.9 114 490-635 11-125 (151)
153 2kck_A TPR repeat; tetratricop 98.5 4.2E-07 1.5E-11 72.8 9.9 98 488-585 6-108 (112)
154 3gw4_A Uncharacterized protein 98.5 2.1E-06 7.3E-11 77.3 15.6 153 429-582 4-175 (203)
155 2fbn_A 70 kDa peptidylprolyl i 98.5 7.1E-08 2.4E-12 87.1 5.6 168 395-583 13-186 (198)
156 2qfc_A PLCR protein; TPR, HTH, 98.5 5.3E-06 1.8E-10 79.9 18.8 162 388-549 77-266 (293)
157 2vgx_A Chaperone SYCD; alterna 98.5 2.9E-07 1E-11 78.4 8.3 115 439-558 9-127 (148)
158 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1E-06 3.5E-11 90.7 13.8 148 431-580 248-412 (457)
159 2c2l_A CHIP, carboxy terminus 98.5 5.7E-07 1.9E-11 86.1 10.9 177 416-627 3-182 (281)
160 3dss_A Geranylgeranyl transfer 98.5 2.4E-05 8.3E-10 75.3 21.8 191 403-622 91-317 (331)
161 3gw4_A Uncharacterized protein 98.5 2.4E-06 8.1E-11 77.0 13.9 153 398-550 4-177 (203)
162 2e2e_A Formate-dependent nitri 98.4 1.5E-06 5.1E-11 76.6 11.8 128 428-558 21-153 (177)
163 1elw_A TPR1-domain of HOP; HOP 98.4 3.2E-06 1.1E-10 68.2 12.9 110 453-564 5-116 (118)
164 3k9i_A BH0479 protein; putativ 98.4 1.8E-07 6.3E-12 76.0 5.4 80 501-580 3-87 (117)
165 2uy1_A Cleavage stimulation fa 98.4 0.00023 7.7E-09 73.6 29.6 120 354-480 289-412 (493)
166 1ihg_A Cyclophilin 40; ppiase 98.4 8.7E-07 3E-11 88.2 10.9 137 452-633 223-360 (370)
167 3q7a_A Farnesyltransferase alp 98.4 2.7E-05 9.3E-10 75.3 20.5 31 551-581 299-329 (349)
168 3sz7_A HSC70 cochaperone (SGT) 98.4 3.5E-06 1.2E-10 73.1 13.1 109 452-563 11-122 (164)
169 2dba_A Smooth muscle cell asso 98.4 4.6E-06 1.6E-10 70.6 13.3 111 452-565 28-144 (148)
170 2l6j_A TPR repeat-containing p 98.4 2.1E-06 7.1E-11 68.7 10.5 93 519-637 3-101 (111)
171 3upv_A Heat shock protein STI1 98.4 2.9E-06 9.9E-11 69.8 11.6 109 454-564 6-122 (126)
172 2xcb_A PCRH, regulatory protei 98.4 2.1E-06 7E-11 72.5 10.9 107 454-563 20-129 (142)
173 3q7a_A Farnesyltransferase alp 98.4 0.00016 5.4E-09 70.0 25.0 230 326-562 64-345 (349)
174 3dss_A Geranylgeranyl transfer 98.4 8.2E-05 2.8E-09 71.6 22.6 193 367-565 90-320 (331)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 6.6E-06 2.2E-10 84.7 15.0 144 401-547 249-413 (457)
176 1hxi_A PEX5, peroxisome target 98.3 2.1E-06 7.3E-11 70.1 9.1 87 523-635 20-106 (121)
177 3q49_B STIP1 homology and U bo 98.3 6.1E-06 2.1E-10 68.9 11.5 100 451-552 8-109 (137)
178 2if4_A ATFKBP42; FKBP-like, al 98.3 1.1E-06 3.7E-11 86.6 7.3 112 452-580 179-290 (338)
179 4gcn_A Protein STI-1; structur 98.3 7.4E-06 2.5E-10 67.5 11.3 61 419-480 10-70 (127)
180 1wao_1 Serine/threonine protei 98.3 3.6E-06 1.2E-10 87.0 11.4 117 460-579 14-135 (477)
181 1wao_1 Serine/threonine protei 98.3 2.8E-06 9.5E-11 87.9 10.3 121 421-545 10-135 (477)
182 4b4t_Q 26S proteasome regulato 98.2 9.7E-06 3.3E-10 82.9 14.0 164 419-582 57-244 (434)
183 2hr2_A Hypothetical protein; a 98.2 3.9E-06 1.3E-10 70.7 8.8 104 457-563 16-145 (159)
184 3ro3_A PINS homolog, G-protein 98.2 7.3E-06 2.5E-10 70.4 10.9 129 454-582 11-157 (164)
185 2if4_A ATFKBP42; FKBP-like, al 98.2 2.2E-06 7.6E-11 84.3 8.2 148 417-584 179-329 (338)
186 1dce_A Protein (RAB geranylger 98.2 1.9E-05 6.5E-10 83.1 15.8 173 431-632 43-244 (567)
187 1na3_A Designed protein CTPR2; 98.2 8.4E-06 2.9E-10 62.2 9.9 82 520-627 9-90 (91)
188 1zu2_A Mitochondrial import re 98.2 1.3E-06 4.3E-11 73.5 4.9 108 464-622 14-133 (158)
189 1elr_A TPR2A-domain of HOP; HO 98.2 6.7E-06 2.3E-10 67.7 9.1 106 456-564 8-122 (131)
190 2xev_A YBGF; tetratricopeptide 98.2 1.9E-05 6.4E-10 65.0 11.8 102 458-562 8-118 (129)
191 1ihg_A Cyclophilin 40; ppiase 98.1 1.4E-05 4.8E-10 79.5 12.3 138 417-576 223-363 (370)
192 2kck_A TPR repeat; tetratricop 98.1 1.6E-05 5.6E-10 63.2 10.5 99 454-554 8-111 (112)
193 3rkv_A Putative peptidylprolyl 98.1 9.5E-06 3.3E-10 70.1 9.4 78 488-565 63-143 (162)
194 1dce_A Protein (RAB geranylger 98.1 7.5E-05 2.6E-09 78.6 17.9 169 401-572 44-244 (567)
195 2l6j_A TPR repeat-containing p 98.1 2E-06 6.8E-11 68.8 3.7 94 487-580 3-104 (111)
196 3k9i_A BH0479 protein; putativ 98.1 4.4E-06 1.5E-10 67.7 5.6 93 465-558 3-99 (117)
197 3ma5_A Tetratricopeptide repea 98.1 1.6E-05 5.6E-10 62.1 8.7 65 518-582 5-69 (100)
198 4b4t_Q 26S proteasome regulato 98.1 7.5E-05 2.6E-09 76.2 16.1 159 424-582 11-203 (434)
199 3ro3_A PINS homolog, G-protein 98.1 2.4E-05 8.1E-10 67.1 10.6 132 419-550 11-159 (164)
200 3n71_A Histone lysine methyltr 98.0 5E-05 1.7E-09 77.9 14.2 123 462-584 319-465 (490)
201 2kat_A Uncharacterized protein 98.0 2.7E-05 9.2E-10 62.7 9.9 77 506-582 3-81 (115)
202 2kc7_A BFR218_protein; tetratr 98.0 1.9E-05 6.4E-10 61.5 8.2 83 526-634 6-91 (99)
203 1na3_A Designed protein CTPR2; 97.9 5.8E-05 2E-09 57.4 9.1 81 488-568 9-91 (91)
204 3bee_A Putative YFRE protein; 97.8 7.4E-05 2.5E-09 57.1 8.7 67 517-583 3-72 (93)
205 1klx_A Cysteine rich protein B 97.8 0.00019 6.5E-09 59.8 11.4 112 466-585 9-128 (138)
206 1pc2_A Mitochondria fission pr 97.7 0.00017 5.8E-09 59.8 9.2 99 505-629 15-120 (152)
207 1zu2_A Mitochondrial import re 97.6 6.2E-05 2.1E-09 63.2 5.6 103 427-554 12-125 (158)
208 3n71_A Histone lysine methyltr 97.5 0.00049 1.7E-08 70.6 11.9 122 427-548 319-463 (490)
209 1klx_A Cysteine rich protein B 97.5 0.0015 5E-08 54.3 12.4 113 430-551 8-128 (138)
210 3qww_A SET and MYND domain-con 97.4 0.00038 1.3E-08 70.1 8.8 62 521-582 341-410 (433)
211 2kat_A Uncharacterized protein 97.3 0.00035 1.2E-08 56.0 6.4 72 538-635 3-74 (115)
212 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0018 6.1E-08 50.6 9.9 85 519-629 4-95 (104)
213 3qwp_A SET and MYND domain-con 97.3 0.0011 3.7E-08 66.9 10.6 61 522-582 331-399 (429)
214 2kc7_A BFR218_protein; tetratr 97.3 0.00033 1.1E-08 54.2 5.3 79 494-580 6-87 (99)
215 3ma5_A Tetratricopeptide repea 97.2 0.0016 5.5E-08 50.5 8.8 64 416-480 6-69 (100)
216 3ly7_A Transcriptional activat 97.2 0.0041 1.4E-07 60.0 12.8 64 518-582 275-338 (372)
217 1wy6_A Hypothetical protein ST 97.1 0.033 1.1E-06 44.2 15.1 141 427-586 17-157 (172)
218 3ly7_A Transcriptional activat 97.1 0.018 6.3E-07 55.5 16.4 142 415-559 192-348 (372)
219 3qww_A SET and MYND domain-con 97.0 0.0035 1.2E-07 63.1 11.4 67 489-555 341-422 (433)
220 1nzn_A CGI-135 protein, fissio 97.0 0.0038 1.3E-07 49.7 8.8 86 518-629 33-123 (126)
221 3mkq_A Coatomer beta'-subunit; 97.0 0.024 8.3E-07 62.8 19.1 153 232-411 608-761 (814)
222 3qwp_A SET and MYND domain-con 97.0 0.0058 2E-07 61.6 12.5 96 462-557 297-413 (429)
223 3u64_A Protein TP_0956; tetrat 96.7 0.0054 1.8E-07 56.7 8.6 83 504-586 179-272 (301)
224 3lvg_A Clathrin heavy chain 1; 96.6 7.5E-05 2.6E-09 73.3 -4.5 259 156-437 53-324 (624)
225 1y8m_A FIS1; mitochondria, unk 96.6 0.048 1.6E-06 44.1 12.3 88 517-630 36-127 (144)
226 3lvg_A Clathrin heavy chain 1; 96.5 0.0024 8.1E-08 63.0 5.1 376 105-510 40-534 (624)
227 3mkq_A Coatomer beta'-subunit; 96.4 0.14 4.9E-06 56.5 19.7 155 325-515 608-763 (814)
228 3o48_A Mitochondria fission 1 96.3 0.026 9E-07 45.0 9.4 90 516-631 36-129 (134)
229 2v5f_A Prolyl 4-hydroxylase su 96.3 0.022 7.7E-07 44.2 9.2 70 492-561 9-87 (104)
230 1pc2_A Mitochondria fission pr 96.0 0.023 8E-07 47.0 7.7 90 467-558 13-109 (152)
231 3mkq_B Coatomer subunit alpha; 95.8 0.29 1E-05 41.6 14.1 129 394-546 13-141 (177)
232 3mkq_B Coatomer subunit alpha; 95.8 0.65 2.2E-05 39.4 16.1 101 295-412 15-115 (177)
233 3bee_A Putative YFRE protein; 95.7 0.077 2.6E-06 40.1 9.4 68 486-553 4-76 (93)
234 1qsa_A Protein (soluble lytic 95.4 3.3 0.00011 43.4 29.9 114 431-548 228-347 (618)
235 3u64_A Protein TP_0956; tetrat 94.7 0.062 2.1E-06 49.7 6.8 82 468-552 179-272 (301)
236 1nzn_A CGI-135 protein, fissio 94.5 0.62 2.1E-05 37.0 11.4 96 462-559 11-113 (126)
237 4gns_B Protein CSD3, chitin bi 94.2 0.25 8.7E-06 52.8 11.2 53 529-581 346-398 (754)
238 4h7y_A Dual specificity protei 93.3 0.13 4.5E-06 41.9 5.5 48 534-581 74-121 (161)
239 1wy6_A Hypothetical protein ST 93.3 2.5 8.7E-05 33.7 15.4 140 327-485 18-157 (172)
240 4h7y_A Dual specificity protei 92.1 1.4 4.6E-05 36.1 9.8 56 502-557 74-131 (161)
241 3ffl_A Anaphase-promoting comp 91.0 1.3 4.6E-05 36.9 9.0 30 487-516 121-150 (167)
242 3ltm_A Alpha-REP4; protein eng 90.8 7.9 0.00027 33.9 18.6 110 191-300 32-141 (211)
243 3txn_A 26S proteasome regulato 90.5 14 0.00047 36.1 18.1 162 352-513 20-206 (394)
244 2wpv_A GET4, UPF0363 protein Y 89.7 13 0.00046 34.8 18.9 168 389-582 36-216 (312)
245 1zbp_A Hypothetical protein VP 89.7 5.4 0.00019 36.3 12.5 122 426-558 6-138 (273)
246 4ady_A RPN2, 26S proteasome re 88.8 31 0.0011 37.9 20.7 22 124-145 233-254 (963)
247 3ffl_A Anaphase-promoting comp 88.7 1.9 6.5E-05 35.9 8.2 122 446-581 12-149 (167)
248 4b4t_P 26S proteasome regulato 87.9 23 0.0008 35.4 25.3 184 330-514 30-244 (445)
249 3txn_A 26S proteasome regulato 87.9 20 0.00069 35.0 16.3 126 388-514 21-165 (394)
250 2ff4_A Probable regulatory pro 87.8 1.2 4.3E-05 43.8 7.9 67 523-589 174-245 (388)
251 4b4t_P 26S proteasome regulato 87.6 24 0.00081 35.3 17.3 184 365-548 30-246 (445)
252 3ltj_A Alpharep-4; protein eng 87.6 13 0.00045 32.1 19.6 80 221-300 57-136 (201)
253 1v54_E Cytochrome C oxidase po 86.9 4.6 0.00016 30.3 8.2 63 432-496 25-87 (109)
254 4gns_B Protein CSD3, chitin bi 86.6 6.2 0.00021 42.2 12.7 52 461-515 346-398 (754)
255 2uwj_G Type III export protein 86.6 8.2 0.00028 28.7 9.3 86 366-456 21-106 (115)
256 2p58_C Putative type III secre 86.2 8.7 0.0003 28.6 10.1 86 366-456 22-107 (116)
257 1zbp_A Hypothetical protein VP 86.2 1.8 6.2E-05 39.3 7.2 50 531-580 8-57 (273)
258 3ltm_A Alpha-REP4; protein eng 85.5 18 0.0006 31.5 18.5 147 216-366 26-172 (211)
259 2wpv_A GET4, UPF0363 protein Y 85.2 25 0.00085 33.0 22.5 180 263-480 22-216 (312)
260 3lpz_A GET4 (YOR164C homolog); 84.9 27 0.00092 33.1 23.0 167 287-480 37-215 (336)
261 3lpz_A GET4 (YOR164C homolog); 83.7 30 0.001 32.7 21.9 165 391-582 40-215 (336)
262 4ady_A RPN2, 26S proteasome re 83.6 57 0.002 35.8 28.9 255 263-524 383-665 (963)
263 1y8m_A FIS1; mitochondria, unk 82.3 17 0.00058 29.4 10.5 70 486-555 37-112 (144)
264 4fhn_B Nucleoporin NUP120; pro 82.1 31 0.0011 39.4 17.0 143 356-506 817-989 (1139)
265 4fhn_B Nucleoporin NUP120; pro 82.1 7.3 0.00025 44.6 11.8 62 523-584 902-968 (1139)
266 1qsa_A Protein (soluble lytic 81.4 55 0.0019 34.2 33.2 239 330-586 228-482 (618)
267 2ff4_A Probable regulatory pro 81.2 11 0.00037 37.0 11.3 69 421-490 175-247 (388)
268 2y69_E Cytochrome C oxidase su 81.1 7 0.00024 31.0 7.5 62 433-496 69-130 (152)
269 3ltj_A Alpharep-4; protein eng 78.8 31 0.001 29.6 19.6 146 218-367 23-168 (201)
270 3o48_A Mitochondria fission 1 77.2 26 0.00088 27.9 10.2 63 449-514 37-104 (134)
271 3esl_A Checkpoint serine/threo 76.9 20 0.00069 30.9 10.0 49 536-584 95-145 (202)
272 1v54_E Cytochrome C oxidase po 74.2 25 0.00086 26.4 9.8 48 514-561 39-86 (109)
273 4b4t_R RPN7, 26S proteasome re 74.1 20 0.00069 35.6 11.0 57 388-444 133-195 (429)
274 1wdy_A 2-5A-dependent ribonucl 69.3 47 0.0016 30.0 12.0 22 198-219 42-63 (285)
275 2qx5_A Nucleoporin NIC96; mRNA 68.2 91 0.0031 32.8 14.5 22 498-519 548-569 (661)
276 1wdy_A 2-5A-dependent ribonucl 67.9 34 0.0012 31.0 10.7 86 126-220 7-97 (285)
277 2uwj_G Type III export protein 67.5 36 0.0012 25.4 9.1 77 169-249 18-94 (115)
278 4b4t_R RPN7, 26S proteasome re 67.4 11 0.00036 37.7 7.2 97 454-550 133-238 (429)
279 2p58_C Putative type III secre 67.0 37 0.0013 25.4 10.2 77 169-249 19-95 (116)
280 4a1g_A Mitotic checkpoint seri 66.2 41 0.0014 27.5 9.1 80 505-587 52-134 (152)
281 1n11_A Ankyrin; clathrin, BAND 65.9 1.1E+02 0.0036 30.1 14.6 16 202-217 120-135 (437)
282 1oyz_A Hypothetical protein YI 64.8 83 0.0028 28.6 19.7 20 219-238 138-157 (280)
283 1k1a_A B-cell lymphoma 3-encod 64.7 56 0.0019 28.7 11.2 20 169-188 18-37 (241)
284 2y69_E Cytochrome C oxidase su 64.6 52 0.0018 26.2 9.8 50 512-561 80-129 (152)
285 2qx5_A Nucleoporin NIC96; mRNA 63.7 1.5E+02 0.0051 31.2 19.8 84 496-580 451-564 (661)
286 3kea_A K1L; tropism, ANK repea 61.7 33 0.0011 31.6 9.2 50 198-247 132-182 (285)
287 2wvi_A Mitotic checkpoint seri 60.7 53 0.0018 27.3 8.9 49 539-587 79-129 (164)
288 3kea_A K1L; tropism, ANK repea 59.6 57 0.002 29.9 10.4 12 104-115 10-21 (285)
289 1q02_A Sequestosome 1; helical 53.9 39 0.0013 21.5 5.2 40 73-115 10-49 (52)
290 1ya0_A SMG-7 transcript varian 53.8 69 0.0024 32.4 10.3 56 526-581 158-213 (497)
291 3mv2_A Coatomer subunit alpha; 53.0 1.5E+02 0.0051 27.8 11.7 59 510-582 195-255 (325)
292 3bqo_A Telomeric repeat-bindin 52.6 80 0.0027 27.0 8.6 73 504-576 94-173 (211)
293 1n11_A Ankyrin; clathrin, BAND 51.5 1.1E+02 0.0038 30.0 11.7 84 497-583 317-402 (437)
294 3eu9_A Huntingtin-interacting 46.3 1.3E+02 0.0046 25.9 10.4 15 101-115 17-31 (240)
295 2d2s_A Exocyst complex compone 46.0 90 0.0031 27.8 8.7 88 423-514 24-117 (235)
296 4ets_A Ferric uptake regulatio 45.9 78 0.0027 26.2 7.8 71 137-208 13-85 (162)
297 1oyz_A Hypothetical protein YI 43.4 1.9E+02 0.0063 26.1 21.4 16 385-400 141-156 (280)
298 2r9g_A AAA ATPase, central reg 42.3 1.3E+02 0.0046 25.7 8.5 63 320-383 15-85 (204)
299 2d2s_A Exocyst complex compone 42.1 1E+02 0.0034 27.5 8.3 23 322-344 24-46 (235)
300 4b4t_S RPN3, 26S proteasome re 41.9 48 0.0016 33.5 6.8 67 488-554 231-304 (523)
301 4gq2_M Nucleoporin NUP120; bet 41.6 2E+02 0.0069 31.9 12.6 56 493-548 845-925 (950)
302 3b7b_A Euchromatic histone-lys 41.3 93 0.0032 27.1 8.4 12 205-216 54-65 (237)
303 2fu4_A Ferric uptake regulatio 40.4 84 0.0029 22.1 6.4 61 147-208 7-68 (83)
304 4g8k_A 2-5A-dependent ribonucl 39.7 2.3E+02 0.008 26.3 14.6 102 373-487 221-328 (337)
305 3esl_A Checkpoint serine/threo 39.7 1.8E+02 0.0062 25.0 11.8 68 419-488 82-150 (202)
306 3eu9_A Huntingtin-interacting 39.5 1.5E+02 0.0052 25.6 9.6 22 198-219 45-66 (240)
307 4b4t_S RPN3, 26S proteasome re 39.5 79 0.0027 32.0 7.9 121 452-580 231-367 (523)
308 1k1a_A B-cell lymphoma 3-encod 38.2 2E+02 0.0067 24.9 10.6 17 202-218 86-102 (241)
309 2nsz_A Programmed cell death p 37.9 1.5E+02 0.005 23.4 8.4 65 389-453 10-79 (129)
310 2fe3_A Peroxide operon regulat 36.6 98 0.0033 24.9 6.9 61 147-208 12-72 (145)
311 2nsz_A Programmed cell death p 35.8 1.2E+02 0.0041 23.9 7.1 64 288-351 10-78 (129)
312 4gq2_M Nucleoporin NUP120; bet 35.1 3E+02 0.01 30.5 12.7 108 291-400 816-950 (950)
313 4aez_C MAD3, mitotic spindle c 34.0 96 0.0033 27.2 6.6 49 538-586 132-182 (223)
314 2xig_A Ferric uptake regulatio 32.9 1.3E+02 0.0046 24.3 7.2 61 147-208 17-77 (150)
315 1mzb_A Ferric uptake regulatio 32.5 1.3E+02 0.0043 23.9 6.9 61 147-208 8-69 (136)
316 2ion_A PDCD4, programmed cell 32.5 1.4E+02 0.0047 24.4 7.1 65 389-453 12-81 (152)
317 3ctd_A Putative ATPase, AAA fa 32.0 1.9E+02 0.0064 25.0 7.9 65 319-383 35-107 (213)
318 3bge_A Predicted ATPase; struc 31.7 1.6E+02 0.0055 25.2 7.3 45 321-365 9-56 (201)
319 3ljn_A Hypothetical protein; a 30.7 3.4E+02 0.012 25.4 11.5 85 100-190 27-114 (364)
320 3aji_A 26S proteasome non-ATPa 30.3 2E+02 0.0069 24.7 8.8 15 101-115 14-28 (231)
321 2fe3_A Peroxide operon regulat 30.1 1.4E+02 0.0046 24.1 6.7 14 467-480 36-49 (145)
322 4aez_C MAD3, mitotic spindle c 29.7 2.9E+02 0.0098 24.2 9.9 54 434-488 131-185 (223)
323 1ug3_A EIF4GI, eukaryotic prot 29.6 3.1E+02 0.011 25.9 10.2 26 227-252 15-40 (339)
324 2wvi_A Mitotic checkpoint seri 29.6 2.4E+02 0.0082 23.3 10.2 55 434-489 77-132 (164)
325 2ion_A PDCD4, programmed cell 28.9 1E+02 0.0035 25.1 5.7 64 288-351 12-80 (152)
326 3ljn_A Hypothetical protein; a 28.7 2.1E+02 0.0073 26.9 9.2 49 295-343 60-108 (364)
327 1bd8_A P19INK4D CDK4/6 inhibit 28.4 1.9E+02 0.0063 22.9 7.6 16 100-115 9-24 (156)
328 4g8k_A 2-5A-dependent ribonucl 28.2 3.6E+02 0.012 24.9 13.4 147 294-452 174-329 (337)
329 2w57_A Ferric uptake regulatio 27.2 1.5E+02 0.0052 24.0 6.6 61 147-208 7-68 (150)
330 2xig_A Ferric uptake regulatio 26.2 1.8E+02 0.0061 23.5 6.8 32 433-464 42-73 (150)
331 3b7b_A Euchromatic histone-lys 25.9 2E+02 0.0068 24.9 7.9 17 202-218 84-100 (237)
332 3hra_A Ankyrin repeat family p 25.9 2.8E+02 0.0097 23.0 9.1 14 204-217 14-27 (201)
333 2zu6_B Programmed cell death p 25.6 4.1E+02 0.014 24.7 12.0 65 420-486 169-235 (307)
334 3ygs_P Procaspase 9; apoptosis 24.8 81 0.0028 23.4 4.0 35 300-334 52-86 (97)
335 3hra_A Ankyrin repeat family p 24.4 3E+02 0.01 22.8 8.6 78 231-310 10-94 (201)
336 3ygs_P Procaspase 9; apoptosis 24.2 99 0.0034 22.9 4.4 37 400-436 51-87 (97)
337 3eyy_A Putative iron uptake re 23.9 1.3E+02 0.0046 24.1 5.6 61 144-206 6-66 (145)
338 1bd8_A P19INK4D CDK4/6 inhibit 23.3 1.2E+02 0.0042 24.1 5.5 14 132-145 10-23 (156)
339 3eiq_C Programmed cell death p 22.9 5E+02 0.017 24.7 13.6 214 289-505 58-305 (358)
340 3mwm_A ZUR, putative metal upt 22.9 1.5E+02 0.0052 23.6 5.7 47 162-208 18-64 (139)
341 2r9g_A AAA ATPase, central reg 22.9 3.6E+02 0.012 23.1 9.7 45 422-467 16-63 (204)
342 2o03_A Probable zinc uptake re 22.2 1.1E+02 0.0039 24.0 4.8 46 422-467 15-60 (131)
343 4ets_A Ferric uptake regulatio 22.1 1.5E+02 0.0051 24.4 5.6 58 444-503 25-84 (162)
344 3twr_A Tankyrase-2; ankyrin re 21.9 3E+02 0.01 21.9 8.2 109 100-218 15-131 (165)
345 3aji_A 26S proteasome non-ATPa 21.3 3.8E+02 0.013 22.8 9.4 15 131-145 13-27 (231)
346 3re2_A Predicted protein; meni 20.8 2E+02 0.0067 27.3 6.3 57 551-627 293-349 (472)
347 4hbd_A KN motif and ankyrin re 20.8 1.4E+02 0.0047 27.0 5.8 105 174-280 160-273 (276)
348 2o03_A Probable zinc uptake re 20.7 1.6E+02 0.0055 23.1 5.4 45 163-207 16-60 (131)
349 3bge_A Predicted ATPase; struc 20.2 4.1E+02 0.014 22.7 9.0 45 422-466 9-56 (201)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-44 Score=391.05 Aligned_cols=490 Identities=9% Similarity=-0.004 Sum_probs=408.9
Q ss_pred hhcCCChHHHHHhhhcCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHH
Q 040576 100 CTSLSSVSLSVLFFDGIQEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKV 179 (641)
Q Consensus 100 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 179 (641)
+.+.|.+..+...++.++.+++..|+.++..+.+.|++++|+.+|+ .|.. ..|+..++..++.+|.+.|++++|..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGE-KVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHH-HHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 3456777888888999888999999999999999999999999999 7764 467889999999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------------------eeHHHHHHHHHHhCCChH
Q 040576 180 HARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWD-------------------LVTWNSMIDGYVKNREVG 240 (641)
Q Consensus 180 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~li~~~~~~g~~~ 240 (641)
++.+... +++..+++.++.+|.++|++++|.++|++..+.+ ..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 6789999999999999999999999999754443 789999999999999999
Q ss_pred HHHHHHhhC--CCCC-chhHHHHHHHHhcCCChHHHHHH---HhhcCCCC----chHHHHHHHHHHhcCChHHHHHHHHh
Q 040576 241 FARELFDFM--PERD-IFTWNSMISGYVDVGDMEAANGL---FDLMPFRD----VVSWNCMIDGYAKIGNVTSARNCFDR 310 (641)
Q Consensus 241 ~A~~~~~~m--~~~~-~~~~~~ll~~~~~~g~~~~a~~~---~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~ 310 (641)
+|+++|++| ..|+ ...+..+...+...+..+.+... +..+...+ ..+|+.++..|.+.|++++|.++|++
T Consensus 218 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 218 RAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 999999999 3343 44555555544444332222111 22222222 45567778899999999999999999
Q ss_pred cCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhH
Q 040576 311 MCM--RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLL 388 (641)
Q Consensus 311 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 388 (641)
+.. +++.+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 966 789999999999999999999999999999865 3366789999999999999999999999998764 567889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 040576 389 STSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHA 465 (641)
Q Consensus 389 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 465 (641)
++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 99999999999999999999998863 567899999999999999999999999999874 34788999999999999
Q ss_pred ccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCH
Q 040576 466 GMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-------PMEAG--PALWGALLSACSTHSNS 536 (641)
Q Consensus 466 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~ 536 (641)
|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|+++|+++ +..|+ ..+|..++.+|...|++
T Consensus 455 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 455 GNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp TCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 9999999999999882 2346889999999999999999999999987 34677 78999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhH
Q 040576 537 ELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIV 616 (641)
Q Consensus 537 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 616 (641)
++|...++++++.+|+++.+|..++.+|.+.|++++|.+.++++ .+++|++.. .
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------l~~~p~~~~--~ 586 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES------------------------LAISPNEIM--A 586 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHHCTTCHH--H
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH------------------------HhcCCCChH--H
Confidence 99999999999999999999999999999999999999999999 788999999 9
Q ss_pred HHHHHHHHH
Q 040576 617 YSMLGEIGA 625 (641)
Q Consensus 617 ~~~l~~l~~ 625 (641)
+..|++++.
T Consensus 587 ~~~l~~~~~ 595 (597)
T 2xpi_A 587 SDLLKRALE 595 (597)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 999888653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-39 Score=353.83 Aligned_cols=473 Identities=7% Similarity=-0.036 Sum_probs=402.7
Q ss_pred CCChhHHHHHHHHHhhcCCChHHHHHhhhcCC--CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHH
Q 040576 86 SQDSFAASRVLKKLCTSLSSVSLSVLFFDGIQ--EPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLL 163 (641)
Q Consensus 86 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~l 163 (641)
.++...++.++. .|.+.|++++|..+|+++. .|+..+|+.++.+|.+.|++++|+.+|+ .+.. .+++..+++.+
T Consensus 81 ~~~~~~~~~~~~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~--~~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRH-DALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLT-KEDL--YNRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHH-HTCG--GGTCHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHH-HHhc--cccchhHHHHH
Confidence 357788889998 6899999999999999983 5777899999999999999999999999 6644 36788999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHh---------------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCeeH
Q 040576 164 GKVCAGIRSLREGKKVHARIVKC---------------GFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPV---WDLVT 225 (641)
Q Consensus 164 l~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 225 (641)
+.++.+.|++++|..+|+.+... |.+++..+|+.++.+|.+.|++++|.++|+++.. .+...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999853211 2234578999999999999999999999998653 34455
Q ss_pred HHHHHHHHHhCCChHHHHHH---HhhCCC----CCchhHHHHHHHHhcCCChHHHHHHHhhcCC--CCchHHHHHHHHHH
Q 040576 226 WNSMIDGYVKNREVGFAREL---FDFMPE----RDIFTWNSMISGYVDVGDMEAANGLFDLMPF--RDVVSWNCMIDGYA 296 (641)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~~---~~~m~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~ 296 (641)
|..+...+...+..+.+... +..+.. .+..+|+.++..|.+.|++++|.++|+++.+ ++..+++.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 66665555443333222111 233322 2334566678889999999999999999987 78999999999999
Q ss_pred hcCChHHHHHHHHhcC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 040576 297 KIGNVTSARNCFDRMC---MRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWI 373 (641)
Q Consensus 297 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 373 (641)
+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|..+++++.+. .+.+..++..++..|.+.|++++|..+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999983 357789999999999999999999999999864 345688999999999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 040576 374 HSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP 450 (641)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 450 (641)
|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 99998864 45688999999999999999999999998763 578899999999999999999999999999864 33
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhh---CCCCc--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHH
Q 040576 451 NDATFICVLSACTHAGMVLEGWWYFDLMQRIY---KIEPK--VEHYGCMVDLLGRAGLMRDSEELVSKL-PM-EAGPALW 523 (641)
Q Consensus 451 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~ 523 (641)
+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|+++++++ .. +.+..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 78899999999999999999999999998732 66787 789999999999999999999999987 22 3478899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 524 GALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 524 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
..+..+|...|++++|...++++++++|+++..+..++.+|.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998875
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.5e-27 Score=243.36 Aligned_cols=365 Identities=11% Similarity=0.074 Sum_probs=272.4
Q ss_pred HHHHhCCChHHHHHHHhhC--CCC-CchhHHHHHHHHhcCCChHHHHHHHhhcCC--C-CchHHHHHHHHHHhcCChHHH
Q 040576 231 DGYVKNREVGFARELFDFM--PER-DIFTWNSMISGYVDVGDMEAANGLFDLMPF--R-DVVSWNCMIDGYAKIGNVTSA 304 (641)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A 304 (641)
..+.+.|++++|++.++++ ..| +...+..+...+...|++++|...++...+ | +..+|..+...|.+.|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 3445556666666666555 223 233444445555666666666666655543 2 355677777777777777777
Q ss_pred HHHHHhcC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 040576 305 RNCFDRMC---MRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPN-EASLMSVLTACANMGVIDIGQWIHSYIQKC 380 (641)
Q Consensus 305 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 380 (641)
+..|+++. +.+...|..+..++...|++++|.+.|+++.+. .|+ ...+..+...+...|++++|...+..+.+.
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 77777762 234456777888888888888888888887764 344 345556666777778888888888887775
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040576 381 RIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFIC 457 (641)
Q Consensus 381 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 457 (641)
. +.+..++..+..+|...|++++|...|+++.+ .+...|..+...+...|++++|+..|++...... .+..++..
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 242 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGN 242 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHH
Confidence 4 34567778888888888888888888887763 3456788888888888999999998888887532 24667888
Q ss_pred HHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 040576 458 VLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL--PMEAGPALWGALLSACSTHS 534 (641)
Q Consensus 458 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g 534 (641)
+...+...|++++|.+.|+++.+ ..|+ ...|..++.+|.+.|++++|++.|+++ ..+.+...+..+...+...|
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 88888889999999999988887 3343 677888888899999999999988887 23356778888888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchh
Q 040576 535 NSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKC 614 (641)
Q Consensus 535 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 614 (641)
++++|...++++++..|+++..+..++.+|.+.|++++|.+.++++ .+++|++..
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------~~~~p~~~~- 374 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA------------------------IRISPTFAD- 374 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH------------------------HTTCTTCHH-
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------HhhCCCCHH-
Confidence 9999999999999999998889999999999999999999999988 667888888
Q ss_pred hHHHHHHHHHHHHH
Q 040576 615 IVYSMLGEIGAQMK 628 (641)
Q Consensus 615 ~~~~~l~~l~~~~~ 628 (641)
++..++.+..+++
T Consensus 375 -a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 375 -AYSNMGNTLKEMQ 387 (388)
T ss_dssp -HHHHHHHHHHHTC
T ss_pred -HHHhHHHHHHHcc
Confidence 8888888777654
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.4e-26 Score=236.20 Aligned_cols=368 Identities=10% Similarity=0.034 Sum_probs=274.7
Q ss_pred HHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCeeHHHHHHHHHHhCCChHH
Q 040576 165 KVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFED---GPVWDLVTWNSMIDGYVKNREVGF 241 (641)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~ 241 (641)
..+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++. ..+.+..+|..+..+|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34455666777777666666553 23344555555666666666666666654 223344555555555555555555
Q ss_pred HHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCC--CC-chHHHHHHHHHHhcCChHHHHHHHHhcC--CC-C
Q 040576 242 ARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPF--RD-VVSWNCMIDGYAKIGNVTSARNCFDRMC--MR-N 315 (641)
Q Consensus 242 A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~-~ 315 (641)
|+..|+++ .+ |+ ...+..+...+.+.|++++|.+.|+++. .| +
T Consensus 86 A~~~~~~a-------------------------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 134 (388)
T 1w3b_A 86 AIEHYRHA-------------------------------LRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134 (388)
T ss_dssp HHHHHHHH-------------------------------HHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHH-------------------------------HHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 55555554 21 22 3345556666666666666666666652 22 3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 040576 316 VVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTM 395 (641)
Q Consensus 316 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 395 (641)
...+..+...+...|++++|.+.|+++.+.. +-+..+|..+...+...|++++|...++.+.+.+ +.+...+..+...
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 212 (388)
T 1w3b_A 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNV 212 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 4456667777778888888888888887642 2345677778888888888888888888888764 4456778888888
Q ss_pred HHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 040576 396 YAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGW 472 (641)
Q Consensus 396 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 472 (641)
+...|++++|...|++..+ .+..+|..++.+|...|++++|+..|+++.+.+.. +..++..+...+.+.|++++|.
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999887653 45678999999999999999999999999986422 5678999999999999999999
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040576 473 WYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 473 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
+.|+++.+. .+.+..++..++..+.+.|++++|++.++++ ...| +...+..+...+...|++++|...+++++++.
T Consensus 292 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 292 DCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999882 3456888999999999999999999999987 3334 46789999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 040576 551 PRDPGPYVLLSNIYASEGK 569 (641)
Q Consensus 551 p~~~~~~~~l~~~~~~~g~ 569 (641)
|+++..|..++.++...|+
T Consensus 370 p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHhHHHHHHHccC
Confidence 9999999999999887764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.7e-27 Score=243.91 Aligned_cols=184 Identities=14% Similarity=0.182 Sum_probs=168.5
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHcCCCCchh
Q 040576 317 VSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGV---------IDIGQWIHSYIQKCRIKPDVL 387 (641)
Q Consensus 317 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 387 (641)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040576 388 LSTSLLTMYAKCGVMDLARNVFDNMT----EKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACT 463 (641)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 463 (641)
+|++||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999987 38999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhc
Q 040576 464 HAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRA 501 (641)
Q Consensus 464 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 501 (641)
+.|++++|.++|++|.+ .+..|+..+|+.++..+...
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999998 89999999999999888753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=5.3e-26 Score=235.99 Aligned_cols=200 Identities=11% Similarity=0.085 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC---------H
Q 040576 333 CECLRLFDRMIRGDAKPNE-ASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGV---------M 402 (641)
Q Consensus 333 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~ 402 (641)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456677788877776654 46888999999999999999999999999999999999999999987765 7
Q ss_pred HHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHh
Q 040576 403 DLARNVFDNMT----EKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLM 478 (641)
Q Consensus 403 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 478 (641)
+.|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999997 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 040576 479 QRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL---PMEAGPALWGALLSACSTH 533 (641)
Q Consensus 479 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~ 533 (641)
.+ .|+.||..+|+.|+++|++.|++++|.+++++| ...|+..+|+.++..|...
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 98 899999999999999999999999999999999 5789999999999988653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.8e-23 Score=221.60 Aligned_cols=278 Identities=12% Similarity=-0.066 Sum_probs=229.3
Q ss_pred chHHHHHHHHHH---cCChHHHHHHHHHHHH-----CCCCC--------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 040576 317 VSWNILLALYVR---CKDYCECLRLFDRMIR-----GDAKP--------NEASLMSVLTACANMGVIDIGQWIHSYIQKC 380 (641)
Q Consensus 317 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 380 (641)
..+......+.. .|++++|+..|+++.+ ....| +..++..+...+...|++++|..+++.+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 344444444554 7899999999999887 31122 2446777888889999999999999999887
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040576 381 RIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFIC 457 (641)
Q Consensus 381 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 457 (641)
... ...+..+..+|...|++++|...|+++.+ .+...|..+...|...|++++|...|+++.+.... +...+..
T Consensus 267 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 343 (514)
T 2gw1_A 267 FPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQ 343 (514)
T ss_dssp CCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHH
T ss_pred Ccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHH
Confidence 633 78888899999999999999999998764 46678999999999999999999999999986433 5678888
Q ss_pred HHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHH
Q 040576 458 VLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL----PMEAG----PALWGALLSA 529 (641)
Q Consensus 458 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~ 529 (641)
+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|++.++++ +..++ ...+..+...
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 999999999999999999999872 2234678888999999999999999999887 22232 3478889999
Q ss_pred HHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccc
Q 040576 530 CST---HSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVE 606 (641)
Q Consensus 530 ~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (641)
+.. .|++++|...++++++..|+++..+..++.+|.+.|++++|.+.++++ .+
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------------~~ 477 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES------------------------AD 477 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH------------------------HH
Confidence 999 999999999999999999999999999999999999999999999999 67
Q ss_pred cCCCCchhhHHHHHHHHHH
Q 040576 607 NCPPHRKCIVYSMLGEIGA 625 (641)
Q Consensus 607 ~~p~~~~~~~~~~l~~l~~ 625 (641)
++|++.+ +...+..+..
T Consensus 478 ~~~~~~~--~~~~~~~~~~ 494 (514)
T 2gw1_A 478 LARTMEE--KLQAITFAEA 494 (514)
T ss_dssp HCSSHHH--HHHHHHHHHH
T ss_pred hccccHH--HHHHHHHHHH
Confidence 7888888 7776655443
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=9.4e-23 Score=217.45 Aligned_cols=419 Identities=11% Similarity=0.020 Sum_probs=228.0
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHH
Q 040576 121 AFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIH 200 (641)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 200 (641)
...|..+...+.+.|++++|+..|+ .+.... +.+..+|..+..++...|++++|...++.+.+.. +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~-~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQ-YAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHH-HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHH-HHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4567777788888888888888888 454431 3456677788888888888888888888888775 346677888888
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCC------CchhHHHHHHHHhcCCChHHHH
Q 040576 201 MYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFMPER------DIFTWNSMISGYVDVGDMEAAN 274 (641)
Q Consensus 201 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~ll~~~~~~g~~~~a~ 274 (641)
+|...|++++|.+.|+.+ ..++...+..+..+...+...+|...++++... ........+..+....+.+.+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 888888888888888632 222223333344555566667777777777321 1122233344455556666666
Q ss_pred HHHhhcCCCCch---HHHHHHHHHHhc--------CChHHHHHHHHhcCCCCc----------chHHHHHHHHHHcCChH
Q 040576 275 GLFDLMPFRDVV---SWNCMIDGYAKI--------GNVTSARNCFDRMCMRNV----------VSWNILLALYVRCKDYC 333 (641)
Q Consensus 275 ~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~ 333 (641)
..+......+.. ....+...+... |++++|..+|+++...++ .+|..+...+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 666555544422 333333322221 245555555555422111 12333444445555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 040576 334 ECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMT 413 (641)
Q Consensus 334 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 413 (641)
+|...|+++.+. .|+...+..+...+...|+++.|...+..+.+.. +
T Consensus 261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~------------------------------ 307 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-P------------------------------ 307 (537)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-T------------------------------
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-C------------------------------
Confidence 555555555442 2334444444444445555555555554444432 2
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHH
Q 040576 414 EKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGC 493 (641)
Q Consensus 414 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 493 (641)
.+..+|..+...|...|++++|...|+++.+.... +...+..+...+...|++++|..+++++.+. .+.+...+..
T Consensus 308 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 383 (537)
T 3fp2_A 308 -EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTF 383 (537)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHH
T ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 23344555555555555555555555555543211 2344555555555555555555555555541 1222445555
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc
Q 040576 494 MVDLLGRAGLMRDSEELVSKL----P----MEAGPALWGALLSACSTH----------SNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 494 li~~~~~~g~~~~A~~~~~~~----~----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
+...|...|++++|++.++++ + .......+..+...+... |++++|...++++++..|+++.
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 555555555555555555553 1 001111223333445555 6666777777777666666666
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 556 PYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
.+..++.+|.+.|++++|.+.++++
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6666777777777777777776666
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8e-23 Score=216.61 Aligned_cols=431 Identities=10% Similarity=-0.021 Sum_probs=305.2
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 040576 123 MCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMY 202 (641)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 202 (641)
.|......+.+.|++++|+..|+ .+.... |+..+|..+..++...|++++|...++.+.+.. +.+..++..+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~-~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYN-WALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHH-HHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHH-HHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 34556667777788888888887 555532 577777777777777888888888888777765 34556777777888
Q ss_pred HhcCCHHHHHHHHhcC---CCCCeeHHHHHHHHHHhCCChHHHHHHHhhC----CCCCchhHHHH---HHHHhcCCChHH
Q 040576 203 SVCGEVLDARKVFEDG---PVWDLVTWNSMIDGYVKNREVGFARELFDFM----PERDIFTWNSM---ISGYVDVGDMEA 272 (641)
Q Consensus 203 ~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~l---l~~~~~~g~~~~ 272 (641)
.+.|++++|...|++. .+.+......++..+.+......+.+.+..+ ..|+...+..- ............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 8888888888777653 2333344444444443332222222222111 00000000000 000001111111
Q ss_pred HHHHHhhcC---------CCC-chHHHHHHHHHHh---cCChHHHHHHHHhcCC-----------------CCcchHHHH
Q 040576 273 ANGLFDLMP---------FRD-VVSWNCMIDGYAK---IGNVTSARNCFDRMCM-----------------RNVVSWNIL 322 (641)
Q Consensus 273 a~~~~~~~~---------~~~-~~~~~~li~~~~~---~~~~~~A~~~~~~~~~-----------------~~~~~~~~l 322 (641)
+...+.... .++ ...+..+...+.. .|++++|...|+++.. .+...|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 111111111 121 3444444444444 7889999988888743 134578888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 040576 323 LALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVM 402 (641)
Q Consensus 323 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 402 (641)
...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 899999999999999999998854 447788889999999999999999999998864 44677888999999999999
Q ss_pred HHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhH
Q 040576 403 DLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQ 479 (641)
Q Consensus 403 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 479 (641)
++|...|+++.+ .+...|..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998753 466789999999999999999999999998863 2256788889999999999999999999998
Q ss_pred HhhCCCCc----hHHHHHHHHHHhh---cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040576 480 RIYKIEPK----VEHYGCMVDLLGR---AGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 480 ~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
....-.++ ...+..++..+.+ .|++++|.+.++++ . .+.+...+..+...+...|++++|...+++++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 73322232 3488899999999 99999999999987 2 23457788899999999999999999999999999
Q ss_pred CCCCchHHHHH
Q 040576 551 PRDPGPYVLLS 561 (641)
Q Consensus 551 p~~~~~~~~l~ 561 (641)
|+++..+..+.
T Consensus 480 ~~~~~~~~~~~ 490 (514)
T 2gw1_A 480 RTMEEKLQAIT 490 (514)
T ss_dssp SSHHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 99887776663
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=3.3e-22 Score=208.14 Aligned_cols=302 Identities=12% Similarity=0.062 Sum_probs=151.2
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHhhcCC---CCchHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHH
Q 040576 254 IFTWNSMISGYVDVGDMEAANGLFDLMPF---RDVVSWNCMIDGYAKIGNVTSARNCFDRMC---MRNVVSWNILLALYV 327 (641)
Q Consensus 254 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 327 (641)
...+..+...+.+.|++++|..+|+.+.+ .+..++..+..+|...|++++|...|+++. +.+...|..+..+|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34566666666666666666666666543 235566666666666666666666666652 233455666666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHH------------HHccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 040576 328 RCKDYCECLRLFDRMIRGDAKPNE----ASLMSVLTA------------CANMGVIDIGQWIHSYIQKCRIKPDVLLSTS 391 (641)
Q Consensus 328 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 391 (641)
..|++++|...|+++.+. .|+. ..+..+... +...|++++|...++.+.+.. +.+..++..
T Consensus 106 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 666666666666666653 2332 333333222 445555555555555555432 234444555
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH---------
Q 040576 392 LLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPND-ATFICV--------- 458 (641)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l--------- 458 (641)
++.+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|+..|+++... .|+. ..+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHH
Confidence 55555555555555555554432 33445555555555555555555555555443 2222 222222
Q ss_pred ---HHHHHhhccHHHHHHHHHHhHHhhCCCCc-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 040576 459 ---LSACTHAGMVLEGWWYFDLMQRIYKIEPK-----VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLS 528 (641)
Q Consensus 459 ---l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 528 (641)
...|.+.|++++|..+|+.+.+ ..|+ ..++..++.++.+.|++++|++.++++ ...| +...|..+..
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3444444555555555544444 1122 223444444444444444444444443 1112 3344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 040576 529 ACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNI 563 (641)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 563 (641)
+|...|++++|...++++++++|+++..+..++.+
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 44444444444444444444444444444444433
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.1e-22 Score=209.60 Aligned_cols=301 Identities=9% Similarity=0.008 Sum_probs=225.7
Q ss_pred CeeHHHHHHHHHHhCCChHHHHHHHhhC---CCCCchhHHHHHHHHhcCCChHHHHHHHhhcCC--C-CchHHHHHHHHH
Q 040576 222 DLVTWNSMIDGYVKNREVGFARELFDFM---PERDIFTWNSMISGYVDVGDMEAANGLFDLMPF--R-DVVSWNCMIDGY 295 (641)
Q Consensus 222 ~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~ 295 (641)
+...|..+...+.+.|++++|+.+|+++ .+.+..+|..+..++...|++++|...|+++.+ | +..++..+...|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4556788888888888888888888887 345667788888888888888888888888764 2 367788888888
Q ss_pred HhcCChHHHHHHHHhcCCCC---c---chHHHHHHH------------HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040576 296 AKIGNVTSARNCFDRMCMRN---V---VSWNILLAL------------YVRCKDYCECLRLFDRMIRGDAKPNEASLMSV 357 (641)
Q Consensus 296 ~~~~~~~~A~~~~~~~~~~~---~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 357 (641)
.+.|++++|.+.|+++...+ . ..|..++.. +...|++++|+..|+++.+.. +.+...+..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 183 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELR 183 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 88888888888888884432 2 556665433 788888888888888887742 3456778888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHH-----------
Q 040576 358 LTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE--K-NVVSWNSM----------- 423 (641)
Q Consensus 358 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l----------- 423 (641)
..++...|++++|..+++.+.+.. +.+..++..++.+|...|++++|...|+++.+ | +...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887754 45677888888888888888888888887763 3 34445444
Q ss_pred -HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 040576 424 -IMGYGMHGQGEKALEMFMEMEKRGPTPN-----DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDL 497 (641)
Q Consensus 424 -i~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 497 (641)
+..+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++.+.+. .+.+...|..++.+
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 77788888888888888888874 344 336677778888888888888888888761 22346778888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 040576 498 LGRAGLMRDSEELVSKL-PMEAG-PALWGALLS 528 (641)
Q Consensus 498 ~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~ 528 (641)
|...|++++|.+.++++ ...|+ ...+..+..
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 88888888888888876 44455 344444443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=6e-22 Score=211.19 Aligned_cols=418 Identities=8% Similarity=-0.002 Sum_probs=273.5
Q ss_pred HhhcCCChHHHHHhhhcC---CCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchh
Q 040576 99 LCTSLSSVSLSVLFFDGI---QEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLRE 175 (641)
Q Consensus 99 ~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 175 (641)
.+.+.|+++.|...|+++ .+.+...|..+..++...|++++|++.|+ ...+.. +.+..++..+..++...|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT-KALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 678899999999999986 45678899999999999999999999999 555542 4456788889999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC------CeeHHHHHHHHHHhCCChHHHHHHHhhC
Q 040576 176 GKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVW------DLVTWNSMIDGYVKNREVGFARELFDFM 249 (641)
Q Consensus 176 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m 249 (641)
|...++. .. ..|+ .....+..+...+....|...+++.... ........+..+....+.+.+...+...
T Consensus 112 A~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSV-LS--LNGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHH-Hh--cCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 9999963 32 2233 2233455566667778899998874322 2223455667778888899998888887
Q ss_pred CCCCch---hHHHHHHHHhcC--------CChHHHHHHHhhcCCCC----------chHHHHHHHHHHhcCChHHHHHHH
Q 040576 250 PERDIF---TWNSMISGYVDV--------GDMEAANGLFDLMPFRD----------VVSWNCMIDGYAKIGNVTSARNCF 308 (641)
Q Consensus 250 ~~~~~~---~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~----------~~~~~~li~~~~~~~~~~~A~~~~ 308 (641)
...+.. ....+...+... |++++|..+++.+.+.+ ..++..+...+...|++++|...|
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 554443 333343333333 47899999999887633 235777788899999999999999
Q ss_pred Hhc--CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCch
Q 040576 309 DRM--CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDV 386 (641)
Q Consensus 309 ~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 386 (641)
+++ ..|+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+.
T Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 344 (537)
T 3fp2_A 267 QESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENV 344 (537)
T ss_dssp HHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCS
T ss_pred HHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCH
Confidence 998 33556788889999999999999999999998753 3356678788888888888888888888877754 2233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 040576 387 LLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAG 466 (641)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 466 (641)
..+..+..+|...|+ +++|...|+++.+.. +.+...+..+...+...|
T Consensus 345 ~~~~~la~~~~~~g~-------------------------------~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 345 YPYIQLACLLYKQGK-------------------------------FTESEAFFNETKLKF-PTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHHHHHHHHTTC-------------------------------HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCC-------------------------------HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 444444455555555 455555554444432 112334444555555555
Q ss_pred cHHHHHHHHHHhHHhhCCCC----chHHHHHHHHHHhhc----------CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 040576 467 MVLEGWWYFDLMQRIYKIEP----KVEHYGCMVDLLGRA----------GLMRDSEELVSKL-P-MEAGPALWGALLSAC 530 (641)
Q Consensus 467 ~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~ 530 (641)
++++|.+.|+++.+...-.+ ....+..+..++.+. |++++|+..|+++ . .+.+...+..+...+
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK 472 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 55555555555443110001 111123334444455 6666666666654 1 123345666666677
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchH
Q 040576 531 STHSNSELGKIVAQHLMELEPRDPGPY 557 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~~~~~ 557 (641)
...|++++|...+++++++.|.++...
T Consensus 473 ~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 777777777777777777777665443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.4e-20 Score=187.38 Aligned_cols=314 Identities=11% Similarity=0.048 Sum_probs=224.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc---CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 040576 288 WNCMIDGYAKIGNVTSARNCFDRM---CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANM 364 (641)
Q Consensus 288 ~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 364 (641)
+..+...+...|++++|...|+++ .+.+...|..+...|...|++++|+..++++.+.. +-+...+..+...+...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence 344444555555555555555554 12234455555555555555555555555555431 12334555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCC--CchhHHHHH------------HHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHH
Q 040576 365 GVIDIGQWIHSYIQKCRIK--PDVLLSTSL------------LTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGY 427 (641)
Q Consensus 365 g~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 427 (641)
|++++|...++.+.+.... .+...+..+ ...+...|++++|...|+++.+ .+...+..+...+
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF 164 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 5666665555555543210 122233222 5778888999999999888763 4667888888999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHH------------HH
Q 040576 428 GMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYG------------CM 494 (641)
Q Consensus 428 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~l 494 (641)
...|++++|...++++.+.. +.+..++..+...+...|++++|...|+.+.+. .|+ ...+. .+
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764 336678888888899999999999999998872 233 22222 23
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 040576 495 VDLLGRAGLMRDSEELVSKL-PMEAG-PA----LWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEG 568 (641)
Q Consensus 495 i~~~~~~g~~~~A~~~~~~~-~~~~~-~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 568 (641)
+..+.+.|++++|++.++++ ...|+ .. .+..+...+...|++++|...++++++..|+++..+..++.+|...|
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 67789999999999999987 22333 32 34457788999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhc
Q 040576 569 KWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRR 632 (641)
Q Consensus 569 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~ 632 (641)
++++|.+.++++ .+++|++.. +...|+++...+++..+
T Consensus 321 ~~~~A~~~~~~a------------------------~~~~p~~~~--~~~~l~~~~~~~~~~~~ 358 (359)
T 3ieg_A 321 MYDEAIQDYEAA------------------------QEHNENDQQ--IREGLEKAQRLLKQSQK 358 (359)
T ss_dssp CHHHHHHHHHHH------------------------HTTCTTCHH--HHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH------------------------HhcCCCChH--HHHHHHHHHHHHHHhcc
Confidence 999999999999 788899999 99999999888876543
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1.4e-16 Score=174.71 Aligned_cols=352 Identities=13% Similarity=0.022 Sum_probs=284.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCC-CC-----CeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHH
Q 040576 190 LDLFVRNSLIHMYSVCGEVLDARKVFEDGP-VW-----DLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISG 263 (641)
Q Consensus 190 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~ 263 (641)
.++.-....+++|...|...+|+++++++. .+ +....+.++.+..+. +..+..+...+...-+ ...+...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~I 1058 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANI 1058 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHH
Confidence 344555778899999999999999999855 22 234566777777777 5566666666654222 4557788
Q ss_pred HhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 040576 264 YVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMI 343 (641)
Q Consensus 264 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 343 (641)
+...|.+++|..+|++....+ ...+.+ +-..+++++|.++.++.. +..+|..+..++...|++++|++.|.+.
T Consensus 1059 ai~lglyEEAf~IYkKa~~~~-~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDVNT-SAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCCHH-HHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 899999999999999985221 112223 227889999999999874 4678999999999999999999999764
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH
Q 040576 344 RGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSM 423 (641)
Q Consensus 344 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 423 (641)
-|...|..++.+|.+.|+++++.+++...++.. ++....+.++.+|++.+++++...+. ..++...|..+
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQV 1201 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHH
Confidence 567788899999999999999999999988865 44444456999999999999655443 45677788889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCC
Q 040576 424 IMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGL 503 (641)
Q Consensus 424 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 503 (641)
...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..+|...|+
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhH
Confidence 99999999999999999985 478999999999999999999998773 45889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--CChHHHHHHHHHh
Q 040576 504 MRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASE--GKWDEVENLRRIM 580 (641)
Q Consensus 504 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m 580 (641)
+..|......+. .++..+..++..|...|.+++|+.+++.++.++|.+...|..|+.+|++. ++..++.+++..-
T Consensus 1266 f~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1266 FRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999887643 45666778999999999999999999999999999999999999998876 4667777776643
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=6.5e-19 Score=174.76 Aligned_cols=286 Identities=10% Similarity=0.052 Sum_probs=217.5
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 040576 314 RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLL 393 (641)
Q Consensus 314 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 393 (641)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 355566667777777777777777777776642 2233345556666777777777777777777654 34566777777
Q ss_pred HHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHH
Q 040576 394 TMYAKCG-VMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVL 469 (641)
Q Consensus 394 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 469 (641)
..|...| ++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 8888888 88888888887664 34567888888888888888888888888876422 4556666888888888999
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCHHH
Q 040576 470 EGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLP-----------MEAGPALWGALLSACSTHSNSEL 538 (641)
Q Consensus 470 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~ 538 (641)
+|.+.++++.+ ..+.+...+..++..|.+.|++++|+..++++. .......+..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99888888876 223346778888888888999998888887751 02335688888889999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHH
Q 040576 539 GKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYS 618 (641)
Q Consensus 539 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 618 (641)
|...++++++..|+++..+..++.+|.+.|++++|.+.++++ .+++|++.. .+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------------l~~~p~~~~--~~~ 308 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA------------------------LGLRRDDTF--SVT 308 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT------------------------TTTCSCCHH--HHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH------------------------HccCCCchH--HHH
Confidence 999999999999999999999999999999999999999988 677888888 888
Q ss_pred HHHHHH-HHHHhh
Q 040576 619 MLGEIG-AQMKMC 630 (641)
Q Consensus 619 ~l~~l~-~~~~~~ 630 (641)
.|+... ..+++.
T Consensus 309 ~l~~~~~~~~g~~ 321 (330)
T 3hym_B 309 MLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHTTTTC-
T ss_pred HHHHHHHHHhCch
Confidence 888865 344433
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.4e-18 Score=174.38 Aligned_cols=306 Identities=10% Similarity=0.012 Sum_probs=217.9
Q ss_pred HHHHHHHhcCCChHHHHHHHhhcCC---CCchHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHHcCC
Q 040576 258 NSMISGYVDVGDMEAANGLFDLMPF---RDVVSWNCMIDGYAKIGNVTSARNCFDRMC---MRNVVSWNILLALYVRCKD 331 (641)
Q Consensus 258 ~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 331 (641)
..+...+...|++++|...|+.+.+ .+..++..+...+...|++++|...|+++. +.+...|..+...|...|+
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC
Confidence 3334444444444444444444432 123455555555566666666666665552 2244566666677777777
Q ss_pred hHHHHHHHHHHHHCCCCC---C-HHHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 040576 332 YCECLRLFDRMIRGDAKP---N-EASLMSV------------LTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTM 395 (641)
Q Consensus 332 ~~~A~~~~~~m~~~g~~p---~-~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 395 (641)
+++|...|+++.+. .| + ...+..+ ...+...|++++|...++.+.+.. +.+...+..+..+
T Consensus 87 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 87 LDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAEC 163 (359)
T ss_dssp HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 77777777777653 34 2 2223222 467788889999999998888764 4567788888899
Q ss_pred HHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH------------HHHH
Q 040576 396 YAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFI------------CVLS 460 (641)
Q Consensus 396 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~------------~ll~ 460 (641)
|...|++++|...++++.+ .+...|..+...|...|++++|...|++..+.... +...+. .+..
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764 46678889999999999999999999998875322 233322 2356
Q ss_pred HHHhhccHHHHHHHHHHhHHhhCCCCch--HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 040576 461 ACTHAGMVLEGWWYFDLMQRIYKIEPKV--EHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNS 536 (641)
Q Consensus 461 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 536 (641)
.+.+.|++++|...++.+.+...-.+.. ..+..+..++...|++++|++.+++. ...| +...|..+...+...|++
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 322 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMY 322 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH
Confidence 6889999999999999998832211111 33556888999999999999999987 2234 677899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 040576 537 ELGKIVAQHLMELEPRDPGPYVLLSNIYASE 567 (641)
Q Consensus 537 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 567 (641)
++|...++++++++|+++..+..+..++...
T Consensus 323 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 323 DEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999998888888776543
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=3.5e-19 Score=175.92 Aligned_cols=284 Identities=12% Similarity=0.114 Sum_probs=117.1
Q ss_pred hcCCChHHHHHhhhcCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHH
Q 040576 101 TSLSSVSLSVLFFDGIQEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVH 180 (641)
Q Consensus 101 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 180 (641)
.+.|++++|.+++++++.|+ +|..+..++.+.|++++|++.|. . .+|..+|..++.++...|++++|..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfi-k------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYI-K------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHH-c------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45788999999999997764 89999999999999999999997 3 367889999999999999999999988
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHH
Q 040576 181 ARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSM 260 (641)
Q Consensus 181 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 260 (641)
+..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 877774 45678899999999999999999988864 66679999999999999999999999987 588888
Q ss_pred HHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHH
Q 040576 261 ISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFD 340 (641)
Q Consensus 261 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 340 (641)
+.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+.+++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888888 367788888888888888888877666553 333334467778888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHcCCCC------chhHHHHHHHHHHhcCCHHHHHHHH
Q 040576 341 RMIRGDAKPNEASLMSVLTACANM--GVIDIGQWIHSYIQKCRIKP------DVLLSTSLLTMYAKCGVMDLARNVF 409 (641)
Q Consensus 341 ~m~~~g~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 409 (641)
...... +.....|+-+..++++- +++.+..+.|. .+.++++ +..+|..++..|..-++++.|..+.
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 776543 33444555554444433 23333333332 1112222 3455666666666666666665544
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=3.5e-17 Score=171.87 Aligned_cols=363 Identities=11% Similarity=-0.018 Sum_probs=271.2
Q ss_pred ChhHHHHHHHHHHh----cCCHHHHHHHHhcCC-CCCeeHHHHHHHHHHh----CCChHHHHHHHhhC-CCCCchhHHHH
Q 040576 191 DLFVRNSLIHMYSV----CGEVLDARKVFEDGP-VWDLVTWNSMIDGYVK----NREVGFARELFDFM-PERDIFTWNSM 260 (641)
Q Consensus 191 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~~~~~~~~l 260 (641)
+...+..|...|.. .+++++|.+.|++.. ..+..++..+...|.. .+++++|++.|++. ...+...+..+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 117 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNL 117 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555555 566666666665422 2344555566666666 66666666666665 22344555556
Q ss_pred HHHHhc----CCChHHHHHHHhhcCCCC-chHHHHHHHHHHh----cCChHHHHHHHHhcCC-CCcchHHHHHHHHHH--
Q 040576 261 ISGYVD----VGDMEAANGLFDLMPFRD-VVSWNCMIDGYAK----IGNVTSARNCFDRMCM-RNVVSWNILLALYVR-- 328 (641)
Q Consensus 261 l~~~~~----~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~-- 328 (641)
...+.. .+++++|...|++..+.+ ...+..|...|.. .++.++|.+.|++..+ .+...+..+...|..
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 666655 667777777777665443 5566777777776 6788888888887733 466777888888887
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----
Q 040576 329 --CKDYCECLRLFDRMIRGDAKPNEASLMSVLTACAN----MGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAK---- 398 (641)
Q Consensus 329 --~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 398 (641)
.+++++|+..|++..+.| +...+..+...+.. .++.++|..+++...+.| +...+..+..+|..
T Consensus 198 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTS
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCC
Confidence 889999999999988864 45667777777765 789999999999988765 45566677778877
Q ss_pred cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc---cHH
Q 040576 399 CGVMDLARNVFDNMTE-KNVVSWNSMIMGYGMH-----GQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAG---MVL 469 (641)
Q Consensus 399 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~ 469 (641)
.++.++|...|++..+ .+..++..+...|... +++++|+.+|++..+.| +...+..+...+...| +.+
T Consensus 272 ~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp SCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 8999999999998775 4667888888888887 89999999999999875 4566777777777655 889
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 040576 470 EGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR----AGLMRDSEELVSKLPMEAGPALWGALLSACST----HSNSELGKI 541 (641)
Q Consensus 470 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 541 (641)
+|.++|++..+ . .+...+..|...|.. .+++++|++.|++.....++..+..|...|.. .++.++|..
T Consensus 349 ~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 349 KAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999988 3 357788888899988 89999999999987434567888888888888 899999999
Q ss_pred HHHHHHhcCCC---CCchHHHHHHHHHh
Q 040576 542 VAQHLMELEPR---DPGPYVLLSNIYAS 566 (641)
Q Consensus 542 ~~~~~~~~~p~---~~~~~~~l~~~~~~ 566 (641)
.|+++.+.+|+ ++.....++.++..
T Consensus 425 ~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 425 WFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999854 67677777766554
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.1e-17 Score=165.98 Aligned_cols=286 Identities=10% Similarity=-0.025 Sum_probs=230.0
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040576 283 RDVVSWNCMIDGYAKIGNVTSARNCFDRMC---MRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLT 359 (641)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 359 (641)
.+..++..+...+...|++++|.++|+++. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 345666777777777888888888888772 3345567777788888899999999888888743 234567777888
Q ss_pred HHHccC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHH
Q 040576 360 ACANMG-VIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEK 435 (641)
Q Consensus 360 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 435 (641)
.+...| ++++|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+ .+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 888888 8888999988888764 44567788888999999999999999988763 346778889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhC-------CCCchHHHHHHHHHHhhcCCHHHHH
Q 040576 436 ALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYK-------IEPKVEHYGCMVDLLGRAGLMRDSE 508 (641)
Q Consensus 436 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~ 508 (641)
|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+..+|.+.|++++|+
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999998864 33567888899999999999999999999887321 1333678889999999999999999
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCChH
Q 040576 509 ELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIY-ASEGKWD 571 (641)
Q Consensus 509 ~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 571 (641)
+.++++ . .+.+...+..+...+...|++++|...++++++++|+++..+..++.++ ...|+.+
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999987 2 2345678889999999999999999999999999999999999999988 4556544
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=3.6e-18 Score=172.35 Aligned_cols=278 Identities=8% Similarity=-0.044 Sum_probs=200.9
Q ss_pred cCChHHHHH-HHHhcCC---C----CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040576 298 IGNVTSARN-CFDRMCM---R----NVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDI 369 (641)
Q Consensus 298 ~~~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 369 (641)
.|++++|.. .|++... . +...|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 5554411 1 23456666666777777777777777776642 2345566666666777777777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHH----------------HHHHHHHHc
Q 040576 370 GQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE--K-NVVSWN----------------SMIMGYGMH 430 (641)
Q Consensus 370 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~----------------~li~~~~~~ 430 (641)
|...++.+.+.. +.+..++..+..+|...|++++|.+.|+++.+ | +...+. .+...+ ..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hc
Confidence 777777666654 34566666677777777777777777766543 1 111111 233334 88
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHH
Q 040576 431 GQGEKALEMFMEMEKRGPTP-NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEE 509 (641)
Q Consensus 431 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 509 (641)
|++++|...|+++.+..... +..++..+...+...|++++|...|+++... .+.+...+..++.+|.+.|++++|++
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998864222 4778889999999999999999999999872 23347789999999999999999999
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCChHHHHHH
Q 040576 510 LVSKL-PM-EAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRD-----------PGPYVLLSNIYASEGKWDEVENL 576 (641)
Q Consensus 510 ~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~ 576 (641)
.++++ .. +.+...+..+...+...|++++|...+++++++.|++ +..|..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99987 22 3457789999999999999999999999999998887 78899999999999999999998
Q ss_pred HHHh
Q 040576 577 RRIM 580 (641)
Q Consensus 577 ~~~m 580 (641)
+++.
T Consensus 353 ~~~~ 356 (368)
T 1fch_A 353 DARD 356 (368)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 8754
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=1.5e-18 Score=175.18 Aligned_cols=312 Identities=12% Similarity=0.026 Sum_probs=223.9
Q ss_pred CChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHHccCCHHHHHHHH
Q 040576 299 GNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLR-LFDRMIRGDA-KP--NEASLMSVLTACANMGVIDIGQWIH 374 (641)
Q Consensus 299 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~ 374 (641)
+.++.+...|+.+...+.. ++...|++++|+. .+++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555555555433322 3445689999998 8887654321 11 3455778888999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 040576 375 SYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN 451 (641)
Q Consensus 375 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 451 (641)
+.+.+.. +.+...+..+..+|...|++++|...|+++.+ .+..+|..++..|...|++++|...|+++...... +
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 165 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-Y 165 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-T
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-c
Confidence 9999875 55788899999999999999999999998763 56789999999999999999999999999986432 2
Q ss_pred HHHHHH---------------HHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 040576 452 DATFIC---------------VLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P 515 (641)
Q Consensus 452 ~~~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 515 (641)
...+.. .+..+...|++++|...|+++.+.....++..++..++.+|.+.|++++|++.++++ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222211 234444899999999999999883222224788999999999999999999999987 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEE
Q 040576 516 -MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLV 594 (641)
Q Consensus 516 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 594 (641)
.+.+...|..+...+...|++++|...+++++++.|+++..+..++.+|.+.|++++|...++++.+..+.....
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---- 321 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP---- 321 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-------
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc----
Confidence 234577899999999999999999999999999999999999999999999999999999999985532211000
Q ss_pred EeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhccc
Q 040576 595 HPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRRDV 634 (641)
Q Consensus 595 ~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~ 634 (641)
....+|.... ++..|+.+...+++..++.
T Consensus 322 ---------~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 322 ---------RGEGGAMSEN--IWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp ------------CCCCCHH--HHHHHHHHHHHHTCGGGHH
T ss_pred ---------cccccchhhH--HHHHHHHHHHHhCChHhHH
Confidence 0122344578 9999999999998876653
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=2.4e-15 Score=165.19 Aligned_cols=413 Identities=12% Similarity=0.079 Sum_probs=288.0
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHHHHhcCC--CCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHH
Q 040576 123 MCNTIMKSFLMLNDPFGALSFYYEKMMAKFV--EHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIH 200 (641)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 200 (641)
--...+++|...|.+.+|+++|+ .....+- .-+...-+.++.+..+. +.....++.....+ .....+..
T Consensus 987 eVs~~vKaf~~aglp~EaieLLE-Kivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~ 1057 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLE-KIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIAN 1057 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHH-HHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHH
Confidence 34567788889999999999998 5553321 12233455566555555 55555555554431 11334666
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhc
Q 040576 201 MYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLM 280 (641)
Q Consensus 201 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 280 (641)
.+...|.+++|..+|++.. ......+.++. ..+++++|.+++++. .+..+|..+..++...|++++|...|.+.
T Consensus 1058 Iai~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 7778899999999998864 11122222222 678889998888876 33567788889999999999999998665
Q ss_pred CCCCchHHHHHHHHHHhcCChHHHHHHHHhcCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040576 281 PFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCM--RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVL 358 (641)
Q Consensus 281 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 358 (641)
.|...|..++..+.+.|++++|.+.|....+ +++...+.++.+|++.+++++..... + .++...|..+.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 5567778889999999999999998876532 33334445888888888888543332 2 35666777888
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 040576 359 TACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALE 438 (641)
Q Consensus 359 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 438 (641)
..|...|++++|..+|..+ ..|..+..+|++.|++++|.+.+++. .+..+|..+..+|...|++..|..
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHH
Confidence 8899999999999998875 37888889999999999999999877 456888888888888888888877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhh--cCCHHHHHHHHHhC-
Q 040576 439 MFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGR--AGLMRDSEELVSKL- 514 (641)
Q Consensus 439 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~--~g~~~~A~~~~~~~- 514 (641)
.... +..++..+..++..|.+.|.+++|+.+++.... +.+. ...|+.|..+|++ -++..++.++|..-
T Consensus 1272 cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1272 CGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 6543 334566677888888889999999999877754 3332 4556666666664 44666777766643
Q ss_pred CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------cCCCCCchHHHHHHHHHhcC--------
Q 040576 515 PMEA------GPALWGALLSACSTHSNSELGKIVAQHLME------------LEPRDPGPYVLLSNIYASEG-------- 568 (641)
Q Consensus 515 ~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g-------- 568 (641)
...| +...|..+...|.+.|+++.|....-.-.. ..+.|++.|+..+.-|...+
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl 1423 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLL 1423 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHH
Confidence 3222 455788888888888888888733221111 13566777777777777666
Q ss_pred -------ChHHHHHHHH
Q 040576 569 -------KWDEVENLRR 578 (641)
Q Consensus 569 -------~~~~A~~~~~ 578 (641)
+.+.+.++++
T Consensus 1424 ~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1424 MVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHhhhcCChHHHHHHHH
Confidence 6667766666
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=3.1e-18 Score=169.21 Aligned_cols=285 Identities=11% Similarity=0.028 Sum_probs=120.4
Q ss_pred hcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCC-
Q 040576 204 VCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPF- 282 (641)
Q Consensus 204 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 282 (641)
+.|++++|.+.+++...| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 566677777777777444 37777777777777777777777553 5566777777777777777777776665553
Q ss_pred -CCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040576 283 -RDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTAC 361 (641)
Q Consensus 283 -~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 361 (641)
+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..+..++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp ------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 3356677777777777777777766653 56667777777777777777777777766 2577777777
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 040576 362 ANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFM 441 (641)
Q Consensus 362 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 441 (641)
.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|..+++
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777777766 256777777777777777777766666544 344444567888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh--hccHHHHHHHHHHhHHhhCCCC------chHHHHHHHHHHhhcCCHHHHHHHHHh
Q 040576 442 EMEKRGPTPNDATFICVLSACTH--AGMVLEGWWYFDLMQRIYKIEP------KVEHYGCMVDLLGRAGLMRDSEELVSK 513 (641)
Q Consensus 442 ~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~ 513 (641)
...... +-....|+.+.-++++ .++..+.++.|..- -.++| +...|..++-.|...++++.|...+-+
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 877543 2234456555555543 45555555555422 23444 356788889999999999998887665
Q ss_pred CC
Q 040576 514 LP 515 (641)
Q Consensus 514 ~~ 515 (641)
-+
T Consensus 308 h~ 309 (449)
T 1b89_A 308 HP 309 (449)
T ss_dssp ST
T ss_pred CC
Confidence 53
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=4.5e-16 Score=163.43 Aligned_cols=350 Identities=12% Similarity=0.022 Sum_probs=296.4
Q ss_pred CCCeeHHHHHHHHHHh----CCChHHHHHHHhhC-CCCCchhHHHHHHHHhc----CCChHHHHHHHhhcCCCC-chHHH
Q 040576 220 VWDLVTWNSMIDGYVK----NREVGFARELFDFM-PERDIFTWNSMISGYVD----VGDMEAANGLFDLMPFRD-VVSWN 289 (641)
Q Consensus 220 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~-~~~~~ 289 (641)
..++.++..+...|.. .+++++|+..|++. ...+...+..+...|.. .+++++|.+.|++..+.+ ...+.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 115 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQ 115 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3466677778888888 89999999999988 34567788888888888 899999999999987654 67788
Q ss_pred HHHHHHHh----cCChHHHHHHHHhcCC-CCcchHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040576 290 CMIDGYAK----IGNVTSARNCFDRMCM-RNVVSWNILLALYVR----CKDYCECLRLFDRMIRGDAKPNEASLMSVLTA 360 (641)
Q Consensus 290 ~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 360 (641)
.|...|.. .+++++|.+.|++... .++..+..+...|.. .+++++|++.|++..+.| +...+..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 88899988 8899999999999844 466778888888887 889999999999999865 66778888888
Q ss_pred HHc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH--
Q 040576 361 CAN----MGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAK----CGVMDLARNVFDNMTE-KNVVSWNSMIMGYGM-- 429 (641)
Q Consensus 361 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~-- 429 (641)
|.. .++.++|...+....+.| +...+..+..+|.. .+++++|...|++..+ .+..++..+...|..
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGL 269 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Confidence 887 899999999999999875 56677788888886 7899999999998775 567788888888888
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh-----ccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcC
Q 040576 430 --HGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHA-----GMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAG 502 (641)
Q Consensus 430 --~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 502 (641)
.+++++|+.+|++..+.| +...+..+...+... +++++|..+|++..+ .+ +...+..+...|.+.|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC---CHHHHHHHHHHHHhCC
Confidence 899999999999998765 556777788888777 899999999999988 33 4567777888888767
Q ss_pred ---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCChH
Q 040576 503 ---LMRDSEELVSKLPMEAGPALWGALLSACST----HSNSELGKIVAQHLMELEPRDPGPYVLLSNIYAS----EGKWD 571 (641)
Q Consensus 503 ---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~ 571 (641)
++++|++.|++.....++..+..+...|.. .++.++|...++++.+.+ ++..+..|+.+|.. .++++
T Consensus 343 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHH
Confidence 889999999988434678889999999988 899999999999998864 57789999999998 89999
Q ss_pred HHHHHHHHhhhCC
Q 040576 572 EVENLRRIMKEKE 584 (641)
Q Consensus 572 ~A~~~~~~m~~~~ 584 (641)
+|...+++..+.+
T Consensus 421 ~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 421 QAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 9999999997655
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=7.3e-16 Score=163.55 Aligned_cols=406 Identities=11% Similarity=0.038 Sum_probs=267.4
Q ss_pred CCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCeeHHHHHHH
Q 040576 154 EHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGP--VWDLVTWNSMID 231 (641)
Q Consensus 154 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~ 231 (641)
+-|...|..++.. ...|+++.|+.+++.+.+.- +.+...|..++..+.+.|++++|.++|++.. .|++..|...+.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3355677777774 56788888888888887653 4466678888888888888888888888743 245556666664
Q ss_pred HH-HhCCChHHHHH----HHhhC-----CC-CCchhHHHHHHHHhc---------CCChHHHHHHHhhcCC-CCc---hH
Q 040576 232 GY-VKNREVGFARE----LFDFM-----PE-RDIFTWNSMISGYVD---------VGDMEAANGLFDLMPF-RDV---VS 287 (641)
Q Consensus 232 ~~-~~~g~~~~A~~----~~~~m-----~~-~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~ 287 (641)
.. ...|+.++|.+ +|++. .. ++...|...+..... .|+++.|..+|++..+ |.. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 34566665554 45443 11 233445444443332 4556666666666554 111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH------HCC---CCCCH-------
Q 040576 288 WNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMI------RGD---AKPNE------- 351 (641)
Q Consensus 288 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~~p~~------- 351 (641)
|..........|. ..+.. ++. ...+++..|..+++++. +.. +.|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~---------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKK---------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHH---------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHH---------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 1111110000000 00011 110 12345666766666532 211 24431
Q ss_pred -HHHHHHHHHHHc----cCCH----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHH
Q 040576 352 -ASLMSVLTACAN----MGVI----DIGQWIHSYIQKCRIKPDVLLSTSLLTMYAK-------CGVMD-------LARNV 408 (641)
Q Consensus 352 -~~~~~ll~~~~~----~g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~ 408 (641)
..|...+..... .++. +.+..+|+.+.... +.+..+|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 344444432222 1232 36777888888763 5567888888888775 68876 89999
Q ss_pred HhhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhhccHHHHHHHHHHhHHhh
Q 040576 409 FDNMTE---K-NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN-D-ATFICVLSACTHAGMVLEGWWYFDLMQRIY 482 (641)
Q Consensus 409 ~~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 482 (641)
|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|.++|++..+
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-- 384 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-- 384 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 998874 3 5678999999999999999999999999985 454 3 4788888888899999999999999987
Q ss_pred CCCCc-hHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---
Q 040576 483 KIEPK-VEHYGCMVDL-LGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG--- 555 (641)
Q Consensus 483 ~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--- 555 (641)
..|. ...|...+.. +...|+.++|..+|++. ...| ++..|..++..+...|+.++|..+|++++...|.++.
T Consensus 385 -~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 385 -DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp -CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred -ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 3333 3333332222 34689999999999976 2224 5788999999999999999999999999998877665
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 040576 556 -PYVLLSNIYASEGKWDEVENLRRIMKEKEL 585 (641)
Q Consensus 556 -~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 585 (641)
.|...+......|+.+.+..+.+++.+..+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 777778888889999999999999866543
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=2.5e-17 Score=159.53 Aligned_cols=245 Identities=11% Similarity=0.029 Sum_probs=139.8
Q ss_pred HHHhcCChHHHHHHHHhcCCCCc----chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040576 294 GYAKIGNVTSARNCFDRMCMRNV----VSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDI 369 (641)
Q Consensus 294 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 369 (641)
-....|++..|+..++.....++ .....+.++|...|++++|+..++.. -.|+..++..+...+...|+.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 34456777777777776543322 23345667777777777777655431 34555566666667777777777
Q ss_pred HHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 040576 370 GQWIHSYIQKCRIKP-DVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGP 448 (641)
Q Consensus 370 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 448 (641)
|.+.++.+...+..| +...+..+..+|...|++++|++.+++ ..+...+..++..|.+.|++++|...|+++.+..
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 777777776655433 445555566666677777777777666 3455566666666666666666666666666542
Q ss_pred CCCHHHH---HHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 040576 449 TPNDATF---ICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGA 525 (641)
Q Consensus 449 ~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 525 (641)
|+.... ...+..+...|++++|..+|+++.+. .+ .++..|+.
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p--------------------------------~~~~~~~~ 205 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CS--------------------------------PTLLLLNG 205 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SC--------------------------------CCHHHHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CC--------------------------------CcHHHHHH
Confidence 332211 11112222335555555555555441 22 33444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHH-HHHHHHHh
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDE-VENLRRIM 580 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m 580 (641)
+..++...|++++|+..++++++++|+++.++..++.++...|++++ +.++++++
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555544 34555555
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=2.1e-17 Score=166.68 Aligned_cols=257 Identities=11% Similarity=-0.025 Sum_probs=170.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH
Q 040576 358 LTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGE 434 (641)
Q Consensus 358 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 434 (641)
...+.+.|++++|..+++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..+|..++.+|...|+++
T Consensus 72 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHH
Confidence 333333334444444443333332 22344455555555555666666665555542 34556777777777777777
Q ss_pred HHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCC
Q 040576 435 KALEMFMEMEKRGPTPN-----------DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGL 503 (641)
Q Consensus 435 ~A~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 503 (641)
+|+..|+++.+. .|+ ...+..+...+...|++++|.++++++.+.....++..++..++..|.+.|+
T Consensus 151 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 151 DACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC
Confidence 777777777664 222 2233445778889999999999999998832222257889999999999999
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 504 MRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 504 ~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
+++|++.|+++ . .+.+...|..+..+|...|++++|+..+++++++.|+++..+..++.+|.+.|++++|...++++.
T Consensus 229 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999987 2 234577999999999999999999999999999999999999999999999999999999999996
Q ss_pred hCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 040576 582 EKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCR 631 (641)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~ 631 (641)
+..+..... .. ......+.. ++..|+.....+++..
T Consensus 309 ~~~~~~~~~----------~~--~~~~~~~~~--~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 309 SLQRKSRNQ----------QQ--VPHPAISGN--IWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHHCC------------------------CH--HHHHHHHHHHHHTCHH
T ss_pred HhCcccCCC----------cc--cchhhhHHH--HHHHHHHHHHHcCcHH
Confidence 543221000 00 000111356 8889999888877654
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1e-16 Score=167.71 Aligned_cols=363 Identities=11% Similarity=-0.047 Sum_probs=188.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcC------------CCCCeeHHHHHHHHHHhCCChHHHHHHHhhCC-------C
Q 040576 191 DLFVRNSLIHMYSVCGEVLDARKVFEDG------------PVWDLVTWNSMIDGYVKNREVGFARELFDFMP-------E 251 (641)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~ 251 (641)
....||.|...+...|++++|++.|++- ......+|+.+..+|...|++++|...+++.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567888888888888888888887641 12234567777777777777777777666541 0
Q ss_pred ---C-CchhHHHHHHHHhc--CCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHH
Q 040576 252 ---R-DIFTWNSMISGYVD--VGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLAL 325 (641)
Q Consensus 252 ---~-~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 325 (641)
+ ...++.....++.. .+++++|+..|++..+. .+.++..+..+..+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----------------------------~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK----------------------------KPKNPEFTSGLAIA 181 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------STTCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh----------------------------CCCCHHHHHHHHHH
Confidence 1 11233333322222 23344555555444321 11122222222222
Q ss_pred ---HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 040576 326 ---YVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACAN----MGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAK 398 (641)
Q Consensus 326 ---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 398 (641)
+...++.++|++.+++..+.. +.+...+..+...+.. .|+.++|..+++...... +.+..++..+...|..
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 223344444555554444321 1122223222222222 234444555554444432 2334444445555555
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040576 399 CGVMDLARNVFDNMTE---KNVVSWNSMIMGYGM-------------------HGQGEKALEMFMEMEKRGPTPNDATFI 456 (641)
Q Consensus 399 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~~~~~~A~~~~~~m~~~g~~p~~~~~~ 456 (641)
.|++++|...|++..+ .+..+|..+..+|.. .+.+++|...+++..+... .+..++.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhh
Confidence 5555555555554432 223334333333321 2346778888888877532 2345677
Q ss_pred HHHHHHHhhccHHHHHHHHHHhHHhhCCCCch--HHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 040576 457 CVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV--EHYGCMVDL-LGRAGLMRDSEELVSKL-PMEAGPALWGALLSACST 532 (641)
Q Consensus 457 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~ 532 (641)
.+...+...|++++|...|+++.+ ....+.. ..+..+... +...|++++|++.|++. ...|+...+..
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~------- 410 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK------- 410 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH-------
T ss_pred hHHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH-------
Confidence 888899999999999999999887 2222221 123333332 34778999999999876 44565443322
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEE
Q 040576 533 HSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLV 594 (641)
Q Consensus 533 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 594 (641)
....+..++++.++.+|+++.+|..|+.+|...|++++|++.+++..+.+.....+.+|+
T Consensus 411 --~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 411 --MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp --HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred --HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 234456778888999999999999999999999999999999999977665544455543
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=5.2e-17 Score=163.73 Aligned_cols=261 Identities=8% Similarity=-0.082 Sum_probs=189.7
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 040576 316 VVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTM 395 (641)
Q Consensus 316 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 395 (641)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666666666666666666666666532 2345566666666666666666666666666653 3345666667777
Q ss_pred HHhcCCHHHHHHHHhhcCCC-------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 040576 396 YAKCGVMDLARNVFDNMTEK-------------NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPT-PNDATFICVLSA 461 (641)
Q Consensus 396 ~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~ 461 (641)
|...|++++|...|+++.+. ....+..+...+...|++++|...|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 77777777777777666531 1223445678888999999999999999886432 157788899999
Q ss_pred HHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 040576 462 CTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELG 539 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 539 (641)
+...|++++|...|+++.+. .+.+..+|..++.+|.+.|++++|++.|+++ ...| +...+..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999882 2335788999999999999999999999987 2234 477899999999999999999
Q ss_pred HHHHHHHHhcCCC------------CCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 540 KIVAQHLMELEPR------------DPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 540 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
...+++++++.|+ +...|..++.++...|+.+.|....++-
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999998876 3668999999999999999998877653
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=6.6e-16 Score=149.51 Aligned_cols=233 Identities=10% Similarity=-0.002 Sum_probs=184.3
Q ss_pred HHHhcCCChHHHHHHHhhcCCCC----chHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHH
Q 040576 262 SGYVDVGDMEAANGLFDLMPFRD----VVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLR 337 (641)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 337 (641)
.-....|+++.|+...+.....+ ......+..+|...|+++.|+..++....++..++..+...+...|+.++|++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 44566899999999998877644 23456678999999999999998887666677788889999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 040576 338 LFDRMIRGDAKPN-EASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE-- 414 (641)
Q Consensus 338 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 414 (641)
.++++...+..|+ ...+..+...+...|++++|...++. +.+...+..++.+|.+.|++++|.+.|+++.+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 9999998776565 44566666889999999999999987 56788899999999999999999999999874
Q ss_pred CChhHHHHHH----HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chH
Q 040576 415 KNVVSWNSMI----MGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVE 489 (641)
Q Consensus 415 ~~~~~~~~li----~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 489 (641)
|+.. ...+. ..+...|++++|+.+|+++.+.. +.+...++.+..++.+.|++++|.+.|+++.+ ..| +..
T Consensus 161 p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~---~~p~~~~ 235 (291)
T 3mkr_A 161 EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD---KDSGHPE 235 (291)
T ss_dssp TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHH
T ss_pred cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHH
Confidence 4432 22232 33445589999999999999873 44777889999999999999999999999887 233 344
Q ss_pred HHHHHHHHHhhcCCHH
Q 040576 490 HYGCMVDLLGRAGLMR 505 (641)
Q Consensus 490 ~~~~li~~~~~~g~~~ 505 (641)
++..++..+...|+.+
T Consensus 236 ~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHcCCCH
Confidence 4555555554444443
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1.1e-16 Score=158.48 Aligned_cols=260 Identities=6% Similarity=-0.080 Sum_probs=192.5
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 040576 317 VSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMY 396 (641)
Q Consensus 317 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 396 (641)
..|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555666666666666666666665532 2244555566666666666666666666666653 33455666666667
Q ss_pred HhcCCHHHHHHHHhhcCC--C-ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040576 397 AKCGVMDLARNVFDNMTE--K-NVVSWNSM--------------IM-GYGMHGQGEKALEMFMEMEKRGPTPNDATFICV 458 (641)
Q Consensus 397 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 458 (641)
...|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...++++.+... .+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHH
Confidence 777777777776666542 1 22222222 22 36778899999999999988643 367788889
Q ss_pred HHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCH
Q 040576 459 LSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PM-EAGPALWGALLSACSTHSNS 536 (641)
Q Consensus 459 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~ 536 (641)
...+...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|.+.++++ .. +.+...+..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999872 2334778889999999999999999999986 22 34577889999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 537 ELGKIVAQHLMELEPR------------DPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 537 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
++|...++++++..|+ ++..+..++.+|.+.|++++|..++++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999998 78899999999999999999999988654
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1.2e-14 Score=154.14 Aligned_cols=408 Identities=9% Similarity=0.057 Sum_probs=286.8
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHH
Q 040576 118 EPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNS 197 (641)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 197 (641)
+.+...|..++. +.+.|++++|..+|+ .+.+. .+.+...|...+..+.+.|+++.|+.+|+.+++.. |+...|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e-~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYE-RLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHH-HHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHH-HHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 446789999998 478999999999999 66654 34566679999999999999999999999998764 67778877
Q ss_pred HHHHH-HhcCCHHHHHH----HHhcC------CCCCeeHHHHHHHHHHh---------CCChHHHHHHHhhCCC-CCc--
Q 040576 198 LIHMY-SVCGEVLDARK----VFEDG------PVWDLVTWNSMIDGYVK---------NREVGFARELFDFMPE-RDI-- 254 (641)
Q Consensus 198 li~~~-~~~g~~~~A~~----~~~~~------~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~-~~~-- 254 (641)
++... ...|+.+.|.+ +|++. ...+...|...+....+ .|++++|..+|++... |+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 77533 35677777665 66642 23456778888876655 6889999999999843 332
Q ss_pred -hhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhc------C-------CCC-----
Q 040576 255 -FTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRM------C-------MRN----- 315 (641)
Q Consensus 255 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~------~-------~~~----- 315 (641)
..|..........|. ..+..++.. +.++++.|..++... . .|+
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 122222111101110 111111110 123445555444431 1 111
Q ss_pred ---cchHHHHHHHHHHc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCHH-------HH
Q 040576 316 ---VVSWNILLALYVRC----KDY----CECLRLFDRMIRGDAKPNEASLMSVLTACAN-------MGVID-------IG 370 (641)
Q Consensus 316 ---~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~~-------~a 370 (641)
...|...+...... ++. +++..+|++.... .+-+...|......+.. .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 13454444332222 232 4777888888874 23456677777776664 68887 88
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h-hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040576 371 QWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE--KN-V-VSWNSMIMGYGMHGQGEKALEMFMEMEKR 446 (641)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 446 (641)
..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|..++..+.+.|+.++|..+|++..+.
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999988632345688899999999999999999999998764 33 2 47999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHH-HHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--
Q 040576 447 GPTPNDATFICVLSA-CTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL----PMEAG-- 519 (641)
Q Consensus 447 g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~-- 519 (641)
.. .+...|...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++. +..|+
T Consensus 386 ~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 386 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp TT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred cC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 32 233334333222 346899999999999998832 234788999999999999999999999987 22332
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040576 520 PALWGALLSACSTHSNSELGKIVAQHLMELEPR 552 (641)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 552 (641)
...|...+......|+.+.+..+++++.+..|+
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 448888888889999999999999999998885
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=7e-16 Score=152.57 Aligned_cols=253 Identities=8% Similarity=-0.030 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 040576 352 ASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYG 428 (641)
Q Consensus 352 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 428 (641)
..+......+...|++++|..+++.+.+.. +.+...+..+..+|...|++++|...|+++.+ .+..+|..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345667778899999999999999999875 45778888999999999999999999998864 46778999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhhccHHHHHHHHHHhHHhhCCCCchHHHHH
Q 040576 429 MHGQGEKALEMFMEMEKRGPTPNDATFICV--------------LS-ACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGC 493 (641)
Q Consensus 429 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 493 (641)
..|++++|...++++.+.... +...+..+ .. .+...|++++|..+++++.+. .+.+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHH
Confidence 999999999999999986322 22222222 22 377889999999999999882 2335788899
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChH
Q 040576 494 MVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWD 571 (641)
Q Consensus 494 li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 571 (641)
++..|.+.|++++|++.++++ . .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|+++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 999999999999999999987 2 23457789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCC------------CchhhHHHHHHHHHHHHHhhhccc
Q 040576 572 EVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPP------------HRKCIVYSMLGEIGAQMKMCRRDV 634 (641)
Q Consensus 572 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~~~~~~~l~~l~~~~~~~~~~~ 634 (641)
+|.+.++++. +..|+ +.. ++..++.+...+++..++.
T Consensus 258 ~A~~~~~~a~------------------------~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 258 LAAKQLVRAI------------------------YMQVGGTTPTGEASREATRS--MWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHHH------------------------HHHTTSCC-----CCTHHHH--HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHH------------------------HhCCccccccccchhhcCHH--HHHHHHHHHHhcCCHHHHH
Confidence 9999999984 44455 566 8889999888887766543
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.3e-15 Score=143.25 Aligned_cols=215 Identities=8% Similarity=-0.020 Sum_probs=164.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C----C----hhHHHHH
Q 040576 354 LMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE--K----N----VVSWNSM 423 (641)
Q Consensus 354 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l 423 (641)
+..+...+...|++++|..+++.+.+.. .+...+..+..+|...|++++|...|++..+ | + ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4444444555555555555555555444 4445555555666666666666666655542 1 1 4677888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcC
Q 040576 424 IMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAG 502 (641)
Q Consensus 424 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 502 (641)
...|...|++++|...|+++.+. .|+. ..+...|++++|...++.+.. ..|+ ...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhc
Confidence 88889999999999999998875 4443 346677899999999999987 3444 677888999999999
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 503 LMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 503 ~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
++++|++.++++ . .+.+...+..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999987 2 23457789999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 040576 581 KE 582 (641)
Q Consensus 581 ~~ 582 (641)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=5.3e-15 Score=154.58 Aligned_cols=378 Identities=9% Similarity=-0.082 Sum_probs=225.5
Q ss_pred CCCcchHHHHHHHHhcCCCchhHHHHHHHHHHh--------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC-------
Q 040576 154 EHNHYTFPLLGKVCAGIRSLREGKKVHARIVKC--------GFELDLFVRNSLIHMYSVCGEVLDARKVFEDG------- 218 (641)
Q Consensus 154 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------- 218 (641)
......|+.+..++...|+.++|.+.++...+. .......+|+.+..+|...|++++|...+++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334557999999999999999999999987653 11223568999999999999999999988752
Q ss_pred CC----CCeeHHHHHHHHHHhC--CChHHHHHHHhhC--CCCC-chhHHHHHHH---HhcCCChHHHHHHHhhcCC--C-
Q 040576 219 PV----WDLVTWNSMIDGYVKN--REVGFARELFDFM--PERD-IFTWNSMISG---YVDVGDMEAANGLFDLMPF--R- 283 (641)
Q Consensus 219 ~~----~~~~~~~~li~~~~~~--g~~~~A~~~~~~m--~~~~-~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~--~- 283 (641)
.. ....+++.+..++.+. +++++|++.|++. ..|+ ...+..+..+ +...++.++|++.+++..+ |
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 11 1234566666666554 5789999999998 3444 4444444433 4456777778777776653 3
Q ss_pred CchHHHHHHHHHHh----cCChHHHHHHHHhc---CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 040576 284 DVVSWNCMIDGYAK----IGNVTSARNCFDRM---CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPN-EASLM 355 (641)
Q Consensus 284 ~~~~~~~li~~~~~----~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~ 355 (641)
+..++..+...+.. .|++++|.+.+++. .+.+...+..+...|...|++++|+..+++..+. .|+ ..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 34455555544444 35677788888776 3345567777888888888888888888888774 343 34444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC
Q 040576 356 SVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQ 432 (641)
Q Consensus 356 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 432 (641)
.+...|...+... .... ...........+..+.|...|+...+ .+..+|..+...|...|+
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 4444432211100 0000 00001111122345677777776653 456788999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHH
Q 040576 433 GEKALEMFMEMEKRGPTPNDA--TFICVLS-ACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEE 509 (641)
Q Consensus 433 ~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 509 (641)
+++|+..|++..+....|... .+..+.. ...+.|++++|+..|++..+ +.|+........ ..+..
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHH
Confidence 999999999998865443322 2233332 24577999999999999987 566643322222 22333
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 040576 510 LVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLS 561 (641)
Q Consensus 510 ~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 561 (641)
++++. . .+.++.+|..+...+...|++++|+..|+++++++|.+|.+..-+|
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33332 1 2345678999999999999999999999999999999887766554
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=2.7e-15 Score=138.66 Aligned_cols=195 Identities=14% Similarity=0.087 Sum_probs=156.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040576 383 KPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVL 459 (641)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 459 (641)
+++...+..+...+...|++++|...|++..+ .+...|..+..++.+.|++++|+..|++..+..+. +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 45667778888889999999999999988764 45678888999999999999999999999886422 566888888
Q ss_pred HHHHhh-----------ccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 040576 460 SACTHA-----------GMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPALWGAL 526 (641)
Q Consensus 460 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l 526 (641)
..+... |++++|+..|++..+ +.|+ ...+..+..+|...|++++|++.|++. ....++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 889999 999999999999988 3454 678888999999999999999999987 212778899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 527 LSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
..++...|++++|+..++++++++|+++..+..++.++...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998763
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=168.34 Aligned_cols=147 Identities=11% Similarity=0.059 Sum_probs=121.7
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhc-------CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040576 285 VVSWNCMIDGYAKIGNVTSARNCFDRM-------CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSV 357 (641)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 357 (641)
..+|++||++||+.|++++|.++|++| ..||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 568999999999999999999999776 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcC
Q 040576 358 LTACANMGVI-DIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE-----KNVVSWNSMIMGYGMHG 431 (641)
Q Consensus 358 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~ 431 (641)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.++...+.- +.+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999984 78999999999999999999999999887776555555444333331 11334444555555444
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=166.99 Aligned_cols=125 Identities=10% Similarity=0.134 Sum_probs=101.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040576 385 DVLLSTSLLTMYAKCGVMDLARNVFDNMT-------EKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFIC 457 (641)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 457 (641)
-..+|++||++||+.|++++|.++|++|. .||+++||+||.+||+.|+.++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45678888888888888888888886653 47888888888888888999999999999988899999999999
Q ss_pred HHHHHHhhcc-HHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHH
Q 040576 458 VLSACTHAGM-VLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEEL 510 (641)
Q Consensus 458 ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 510 (641)
+|.++++.|+ .++|.++|++|.+ .|+.||..+|++++....+.+-++...++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9998888887 4788888999988 78889988888888776665444444333
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.3e-14 Score=138.02 Aligned_cols=235 Identities=7% Similarity=-0.086 Sum_probs=178.5
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCc----hhHHH
Q 040576 317 VSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRI--KPD----VLLST 390 (641)
Q Consensus 317 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 390 (641)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 346667777777777888877777777765 6666777777777778888888777777765421 111 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccH
Q 040576 391 SLLTMYAKCGVMDLARNVFDNMTE--KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMV 468 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 468 (641)
.+..+|...|++++|...|+++.+ ++ ...+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 788888888888888888887764 33 245666788899999999988753 12345777888889999999
Q ss_pred HHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040576 469 LEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PM-EAGPALWGALLSACSTHSNSELGKIVAQHL 546 (641)
Q Consensus 469 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 546 (641)
++|...++++.+. .+.+...+..+..+|.+.|++++|++.++++ .. +.+...|..+..++...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999872 2334778888999999999999999999887 22 344778888999999999999999999999
Q ss_pred HhcC------CCCCchHHHHHHH
Q 040576 547 MELE------PRDPGPYVLLSNI 563 (641)
Q Consensus 547 ~~~~------p~~~~~~~~l~~~ 563 (641)
+++. |++...+..+..+
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhChhhcCCCchHHHHHHHHHh
Confidence 9988 7776666665543
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=8e-15 Score=138.10 Aligned_cols=215 Identities=9% Similarity=0.042 Sum_probs=158.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040576 385 DVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSA 461 (641)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 461 (641)
....+..+...+...|++++|...|+++.+ .+...+..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566677777888888888888887754 356778888888889999999999999888764 2356778888888
Q ss_pred HHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHH
Q 040576 462 CTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELG 539 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a 539 (641)
+...|++++|.++++++.+. .+.+...+..++..+.+.|++++|++.++++ . ...+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998872 2335677888889999999999999999886 2 234577888888999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHH
Q 040576 540 KIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSM 619 (641)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 619 (641)
...++++++..|+++..+..++.+|...|++++|.+.++++ .+.+|++.. ++..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------------------~~~~p~~~~--~~~~ 232 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA------------------------IDIQPDHML--ALHA 232 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH------------------------HHHCTTCHH--HHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH------------------------HccCcchHH--HHHH
Confidence 99999999999999999999999999999999999999998 677888888 7777
Q ss_pred HHHHHHHHH
Q 040576 620 LGEIGAQMK 628 (641)
Q Consensus 620 l~~l~~~~~ 628 (641)
++.+....+
T Consensus 233 ~~~l~~~~~ 241 (243)
T 2q7f_A 233 KKLLGHHHH 241 (243)
T ss_dssp HTC------
T ss_pred HHHHHhhcc
Confidence 777665443
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=3.4e-14 Score=136.39 Aligned_cols=238 Identities=10% Similarity=-0.007 Sum_probs=151.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCC
Q 040576 359 TACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE--KN----VVSWNSMIMGYGMHGQ 432 (641)
Q Consensus 359 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~ 432 (641)
..+...|++++|..+++.+.+.. +.+...+..+..+|...|++++|...|++..+ ++ ..+|..+...|...|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 33444444444444444444432 22233444455555555555555555555443 11 1236667777777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHH
Q 040576 433 GEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELV 511 (641)
Q Consensus 433 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 511 (641)
+++|+..|++..+.... +...+..+...+...|++++|...|+++.+ ..|+ ...+..+...+...+++++|++.|
T Consensus 90 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777765322 445677777777777777777777777765 2333 555666662333445778888777
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHHhcCChHHHHHHHH
Q 040576 512 SKL-PMEAG-PALWGALLSACSTHSN---SELGKIVAQHLMELE---PRD-----PGPYVLLSNIYASEGKWDEVENLRR 578 (641)
Q Consensus 512 ~~~-~~~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 578 (641)
+++ ...|+ ...+..+...+...|+ .++|...++++++.. |+. ...|..++.+|...|++++|.+.++
T Consensus 166 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 766 22233 5566667777777777 777888888888765 432 2578889999999999999999999
Q ss_pred HhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHH
Q 040576 579 IMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQM 627 (641)
Q Consensus 579 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~ 627 (641)
++ .+++|++.. +...++.+....
T Consensus 246 ~a------------------------l~~~p~~~~--a~~~l~~~~~~~ 268 (272)
T 3u4t_A 246 NI------------------------LALDPTNKK--AIDGLKMKLEHH 268 (272)
T ss_dssp HH------------------------HHHCTTCHH--HHHHHC------
T ss_pred HH------------------------HhcCccHHH--HHHHhhhhhccc
Confidence 99 788899999 888888766544
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=5.3e-14 Score=135.21 Aligned_cols=241 Identities=9% Similarity=-0.068 Sum_probs=188.3
Q ss_pred HcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 040576 328 RCKDYCECLRLFDRMIRGDAK---PNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDL 404 (641)
Q Consensus 328 ~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 404 (641)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888875321 134567777888888899999998888888765 4467888889999999999999
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHh
Q 040576 405 ARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRI 481 (641)
Q Consensus 405 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 481 (641)
|...|+++.+ .+...|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988774 46788999999999999999999999999985 455555555555667789999999999888772
Q ss_pred hCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 040576 482 YKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLP-MEAG-----PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 482 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
.+++...+ .++..+...++.++|++.+++.- ..|. ...+..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33344444 47778888899999999998863 2232 467888899999999999999999999999998754
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 040576 556 PYVLLSNIYASEGKWDEVENLR 577 (641)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~ 577 (641)
..+.++...|++++|++.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3467888899999998876
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=3.1e-14 Score=131.46 Aligned_cols=191 Identities=12% Similarity=0.090 Sum_probs=162.0
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHH
Q 040576 415 KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGC 493 (641)
Q Consensus 415 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 493 (641)
++...|..+...+.+.|++++|+..|++..+... .+...+..+...+.+.|++++|+..++++.+ ..|+ ...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVA---RTPRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHH
Confidence 4567888999999999999999999999998642 2567888899999999999999999999988 3454 678889
Q ss_pred HHHHHhhc-----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 040576 494 MVDLLGRA-----------GLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLL 560 (641)
Q Consensus 494 li~~~~~~-----------g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 560 (641)
+..+|.+. |++++|+..+++. ...| +...|..+...+...|++++|+..++++++++ +++..+..+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 99999999 9999999999987 3344 46788899999999999999999999999999 999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhccccc
Q 040576 561 SNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRRDVAS 636 (641)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 636 (641)
+.+|...|++++|+..++++ .+.+|++.. ++..++.+...+++..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~a------------------------l~~~P~~~~--~~~~la~~~~~~g~~~~A~~~ 207 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKA------------------------LEQAPKDLD--LRVRYASALLLKGKAEEAARA 207 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHH------------------------HHHSTTCHH--HHHHHHHHHTC----------
T ss_pred HHHHHHcCCHHHHHHHHHHH------------------------HHhCCCChH--HHHHHHHHHHHccCHHHHHHH
Confidence 99999999999999999999 778999999 999999999999888877654
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=1.9e-14 Score=148.71 Aligned_cols=376 Identities=9% Similarity=-0.030 Sum_probs=187.4
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH---HHHHHHHhcCCCCCeeHHHHHHHHHHhCC--
Q 040576 163 LGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEV---LDARKVFEDGPVWDLVTWNSMIDGYVKNR-- 237 (641)
Q Consensus 163 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 237 (641)
+...+.+.|++++|..+++...+.| +...+..|..+|...|+. ++|.+.|++....++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3444556677777777777777665 233344455555556666 66777666644445555555555444443
Q ss_pred ---ChHHHHHHHhhCCC-CCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhc-C
Q 040576 238 ---EVGFARELFDFMPE-RDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRM-C 312 (641)
Q Consensus 238 ---~~~~A~~~~~~m~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-~ 312 (641)
++++|+..|++... -+...+..+...|...+..+.+.. +.+.+... .
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~----------------------------a~~~~~~a~~ 137 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVN----------------------------AQQQISQWQA 137 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCC----------------------------HHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHH----------------------------HHHHHHHHHH
Confidence 45566666655522 222344444444443332222111 22222222 1
Q ss_pred CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCchhHH
Q 040576 313 MRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMG---VIDIGQWIHSYIQKCRIKPDVLLS 389 (641)
Q Consensus 313 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 389 (641)
..++..+..+...|...+.++++........+.-...+...+..+...|...| +.++|...|....+.| .++...+
T Consensus 138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~ 216 (452)
T 3e4b_A 138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV 216 (452)
T ss_dssp HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH
Confidence 22344455555555555543333333222211111111124445555555555 5566666666665555 3334433
Q ss_pred HHHHHHHHhc----CCHHHHHHHHhhcCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040576 390 TSLLTMYAKC----GVMDLARNVFDNMTEKNVVSWNSMIMG-Y--GMHGQGEKALEMFMEMEKRGPTPNDATFICVLSAC 462 (641)
Q Consensus 390 ~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 462 (641)
..|..+|... +++++|.+.|++....+...+..|... | ...+++++|+.+|++..+.| +...+..+...|
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 293 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLY 293 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 4455555443 567777777766663344566666665 3 35677888888888777765 555666666666
Q ss_pred Hhhc-----cHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 040576 463 THAG-----MVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR----AGLMRDSEELVSKLPMEAGPALWGALLSACST- 532 (641)
Q Consensus 463 ~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~- 532 (641)
. .| ++++|.++|++.. .-+...+..|..+|.. ..++++|.+.|++.....++.....|...|..
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQG 367 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSC
T ss_pred H-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhC
Confidence 5 45 7788888777664 2345566666666655 33778888888776333444455556655543
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH--HhcCChHHHHHHHHHhh
Q 040576 533 ---HSNSELGKIVAQHLMELEPRDPGPYVLLSNIY--ASEGKWDEVENLRRIMK 581 (641)
Q Consensus 533 ---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~ 581 (641)
..|.++|...|+++.+.++... ...+..+. ...++.++|..+.++-.
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g~~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQDTPEA--NDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTCCHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4578888888888877665433 33333332 23345666666666543
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=8.5e-14 Score=133.60 Aligned_cols=244 Identities=9% Similarity=-0.021 Sum_probs=125.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHc
Q 040576 289 NCMIDGYAKIGNVTSARNCFDRMCM---RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPN--EASLMSVLTACAN 363 (641)
Q Consensus 289 ~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~ 363 (641)
......+...|++++|+..|++... .+...|..+...|...|++++|+..+++..+.+..|+ ...|..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3444555555555555555555411 2333555555555555555555555555554221111 1224444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 040576 364 MGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEM 443 (641)
Q Consensus 364 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 443 (641)
.|++++|...++.+.+.. + .+...|..+...|...|++++|+..|++.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~-------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-T-------------------------------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-T-------------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred cccHHHHHHHHHHHHhcC-c-------------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555554444432 1 23344555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCC---HHHHHHHHHhC----C
Q 040576 444 EKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGL---MRDSEELVSKL----P 515 (641)
Q Consensus 444 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~----~ 515 (641)
.+.. +.+...+..+...+...+++++|.+.|+++.+ ..|+ ...+..+..++...|+ +++|...++++ .
T Consensus 135 l~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 135 IRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp CCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred hhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 4431 11233344444223333455555555555554 1222 3444445555555554 44444444433 1
Q ss_pred CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 040576 516 MEAG------PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEG 568 (641)
Q Consensus 516 ~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 568 (641)
..|+ ...+..+...|...|++++|...++++++++|+++.++..+..+....+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 1122 2456678888889999999999999999999999888888776655444
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.6e-13 Score=127.31 Aligned_cols=194 Identities=12% Similarity=-0.010 Sum_probs=147.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040576 385 DVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSA 461 (641)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 461 (641)
+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 345566666777777777777777776552 345677777788888888888888888877753 2256677777888
Q ss_pred HHhh-ccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHH
Q 040576 462 CTHA-GMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PME-AGPALWGALLSACSTHSNSE 537 (641)
Q Consensus 462 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~ 537 (641)
+... |++++|...++.+.+ .+..|+ ...+..++.++...|++++|++.++++ ... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888876 333343 566777888888888888888888776 222 34667788888888888999
Q ss_pred HHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 538 LGKIVAQHLMELEP-RDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 538 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
+|...++++++..| +++..+..++..+...|+.++|..+++.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999988888888 88888888888888889998888888887
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=1.1e-13 Score=143.11 Aligned_cols=340 Identities=10% Similarity=-0.018 Sum_probs=213.9
Q ss_pred HHHhCCChHHHHHHHhhC-CCCCchhHHHHHHHHhcCCCh---HHHHHHHhhcCCCCchHHHHHHHHHHhcC-----ChH
Q 040576 232 GYVKNREVGFARELFDFM-PERDIFTWNSMISGYVDVGDM---EAANGLFDLMPFRDVVSWNCMIDGYAKIG-----NVT 302 (641)
Q Consensus 232 ~~~~~g~~~~A~~~~~~m-~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~ 302 (641)
.+.+.|++++|+++|++. ...+...+..+...+...|+. ++|...|++..+.+...+..|...+...+ +.+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence 334444444444444444 112223333333344444444 55555555555444445555555444433 566
Q ss_pred HHHHHHHhcCC-CCcchHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 040576 303 SARNCFDRMCM-RNVVSWNILLALYVRCKDYC---ECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQ 378 (641)
Q Consensus 303 ~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 378 (641)
+|...|++... .+...+..|...|...+..+ ++.+.+......|. ......+...|...+.++.+......+.
T Consensus 92 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~ 168 (452)
T 3e4b_A 92 EAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERIC 168 (452)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 77777776633 34456777777777665543 34555555555443 3345566666777775444443333332
Q ss_pred HcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhcCC---CChhHHHHHHHHHHHc----CChHHHHHHHHHHHHCCC
Q 040576 379 KCRIKPDVLLSTSLLTMYAKCG---VMDLARNVFDNMTE---KNVVSWNSMIMGYGMH----GQGEKALEMFMEMEKRGP 448 (641)
Q Consensus 379 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~~~A~~~~~~m~~~g~ 448 (641)
+.-...+...+..|..+|...| +.++|.+.|++..+ ++...+..|...|... +++++|+.+|++.. .|
T Consensus 169 ~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g- 246 (452)
T 3e4b_A 169 KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG- 246 (452)
T ss_dssp HHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-
Confidence 2222233447888999999999 99999999998764 3444457777777655 79999999999987 43
Q ss_pred CCCHHHHHHHHHH-H--HhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcC-----CHHHHHHHHHhCCCCCCH
Q 040576 449 TPNDATFICVLSA-C--THAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAG-----LMRDSEELVSKLPMEAGP 520 (641)
Q Consensus 449 ~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~ 520 (641)
+...+..+... + ...+++++|.++|++..+ .| +...+..|..+|. .| ++++|++.|++.. ..++
T Consensus 247 --~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~ 318 (452)
T 3e4b_A 247 --YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREV 318 (452)
T ss_dssp --STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCH
T ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCH
Confidence 44556666665 3 468999999999999987 44 5667777888887 55 9999999999998 7778
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCChHHHHHHHHHhhhCCCc
Q 040576 521 ALWGALLSACST----HSNSELGKIVAQHLMELEPRDPGPYVLLSNIYAS----EGKWDEVENLRRIMKEKELE 586 (641)
Q Consensus 521 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 586 (641)
..+..|...|.. ..+.++|...|+++.+. .++.....|+.+|.. ..+.++|..++++..+.|..
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 888888877766 34999999999998874 567789999999985 45899999999999887753
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=6.9e-13 Score=127.40 Aligned_cols=187 Identities=9% Similarity=-0.064 Sum_probs=120.2
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040576 389 STSLLTMYAK----CGVMDLARNVFDNMTE-KNVVSWNSMIMGYGM----HGQGEKALEMFMEMEKRGPTPNDATFICVL 459 (641)
Q Consensus 389 ~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 459 (641)
+..+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 117 (273)
T 1ouv_A 41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLG 117 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHH
Confidence 3334444444 4455555554444432 244455555666666 666777777777666653 555666666
Q ss_pred HHHHh----hccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040576 460 SACTH----AGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR----AGLMRDSEELVSKLPMEAGPALWGALLSACS 531 (641)
Q Consensus 460 ~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 531 (641)
..|.. .+++++|.++|++..+ .+ +...+..+...|.. .+++++|++.|++.....+...+..+...+.
T Consensus 118 ~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 118 GIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666 6777777777777766 22 34555666666666 6777777777776532244566666777777
Q ss_pred h----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCChHHHHHHHHHhhhCC
Q 040576 532 T----HSNSELGKIVAQHLMELEPRDPGPYVLLSNIYAS----EGKWDEVENLRRIMKEKE 584 (641)
Q Consensus 532 ~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 584 (641)
. .+++++|...++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.+
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7 7788888888888777755 5567778888887 788888888888876554
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=1.6e-13 Score=130.12 Aligned_cols=193 Identities=8% Similarity=-0.051 Sum_probs=145.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040576 386 VLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSAC 462 (641)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 462 (641)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|...|+++.+... .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 44556666667777777777777776552 3556777777778888888888888888777532 2556777777788
Q ss_pred HhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHH
Q 040576 463 THAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELG 539 (641)
Q Consensus 463 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a 539 (641)
...|++++|.++++++.. .+..| +...+..++..|.+.|++++|.+.++++ . ...+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888887765 33444 3566777788888888888888888776 2 223466777888888888888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 540 KIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
...++++++..|+++..+..++.+|...|++++|.+.++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.3e-13 Score=137.93 Aligned_cols=243 Identities=9% Similarity=0.032 Sum_probs=178.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhcCC---CChhHHHHHHHHHHH
Q 040576 354 LMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGV-MDLARNVFDNMTE---KNVVSWNSMIMGYGM 429 (641)
Q Consensus 354 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 429 (641)
|..+...+...|++++|...++.+++.. +.+..+|+.+..+|...|+ +++|+..|+++.+ .+...|+.+..++..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3344444445555555555555555443 3345566666667777775 7777777777653 456778888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhh-cCCHHHH
Q 040576 430 HGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGR-AGLMRDS 507 (641)
Q Consensus 430 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~~~A 507 (641)
.|++++|+..|+++.+.... +...|..+..++...|++++|+..|+++.+ +.| +...|+.+..+|.+ .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred ccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 88888899988888886433 567888888888888999999999998887 334 46778888888888 5665666
Q ss_pred -----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---------C
Q 040576 508 -----EELVSKL-PMEA-GPALWGALLSACSTHS--NSELGKIVAQHLMELEPRDPGPYVLLSNIYASEG---------K 569 (641)
Q Consensus 508 -----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~ 569 (641)
++.|++. ...| +...|..+...+...| ++++|...++++ +.+|+++..+..++.+|.+.| .
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 4667665 2334 4668888888888887 689999999998 889999999999999999875 3
Q ss_pred hHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHH
Q 040576 570 WDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQM 627 (641)
Q Consensus 570 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~ 627 (641)
+++|+++++++. .+++|.... .|..++......
T Consensus 334 ~~~A~~~~~~l~-----------------------~~~DP~r~~--~w~~~~~~l~~~ 366 (382)
T 2h6f_A 334 LNKALELCEILA-----------------------KEKDTIRKE--YWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHH-----------------------HTTCGGGHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------------------HHhCchhHH--HHHHHHHHHHHH
Confidence 589999999872 356788888 888887766554
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=9e-14 Score=141.90 Aligned_cols=293 Identities=12% Similarity=0.006 Sum_probs=190.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-chhHH
Q 040576 319 WNILLALYVRCKDYCECLRLFDRMIRGDAKPN----EASLMSVLTACANMGVIDIGQWIHSYIQKC----RIKP-DVLLS 389 (641)
Q Consensus 319 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~ 389 (641)
+......+...|++++|+..|++..+.+. .+ ...+..+...+...|+++.|...++.+.+. +..+ ...++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 44445556666666666666666655321 11 134555555666666666666666554332 1111 24455
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHH
Q 040576 390 TSLLTMYAKCGVMDLARNVFDNMTE-----KN----VVSWNSMIMGYGMHGQ--------------------GEKALEMF 440 (641)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A~~~~ 440 (641)
..+...|...|++++|...+++..+ .+ ..++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 6666777777777777777766553 12 3367777777888888 88888887
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHHhhcCCHHHHHHHH
Q 040576 441 MEMEKR----GPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK----VEHYGCMVDLLGRAGLMRDSEELV 511 (641)
Q Consensus 441 ~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 511 (641)
++..+. +-.|. ..++..+...+...|++++|...++++.+...-.++ ...+..+...|...|++++|.+.+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 776542 11111 236677778888899999999998888762211122 346778888899999999999888
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChHHHHHHH
Q 040576 512 SKL----PMEAG----PALWGALLSACSTHSNSELGKIVAQHLMELEPRD------PGPYVLLSNIYASEGKWDEVENLR 577 (641)
Q Consensus 512 ~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 577 (641)
++. +..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 875 11122 3466778888899999999999999988865443 457888999999999999999999
Q ss_pred HHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhc
Q 040576 578 RIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRR 632 (641)
Q Consensus 578 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~ 632 (641)
++..+.... ....|.... ++..|+.+...+++..+
T Consensus 331 ~~al~~~~~------------------~~~~~~~~~--~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 331 EKHLEISRE------------------VGDKSGELT--ARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHH------------------TTCHHHHHH--HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHH------------------hcCCcchhH--HHHHHHHHHHHhhHhHH
Confidence 987543110 111233344 67777777777776644
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=9.1e-14 Score=133.54 Aligned_cols=241 Identities=13% Similarity=0.007 Sum_probs=190.8
Q ss_pred HccCCHHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHH
Q 040576 362 ANMGVIDIGQWIHSYIQKCRIK---PDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEK 435 (641)
Q Consensus 362 ~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 435 (641)
...|++++|...++.+.+.... .+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 3457899999999999986421 2467888899999999999999999998873 467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 040576 436 ALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL- 514 (641)
Q Consensus 436 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 514 (641)
|...|+++.+... .+...+..+...+...|++++|...|+++.+ ..|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999998642 2567888999999999999999999999988 3455444445555667789999999999765
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccC
Q 040576 515 P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPR----DPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAV 589 (641)
Q Consensus 515 ~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 589 (641)
. ..++...+ .++..+...++.++|...++++++..|. ++..+..++.+|.+.|++++|...++++
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------- 241 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA--------- 241 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH---------
Confidence 2 22333334 4777788889999999999999887663 3678999999999999999999999999
Q ss_pred ceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhccccc
Q 040576 590 GSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRRDVAS 636 (641)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 636 (641)
...+|++.. .+ +....++++..+++.+
T Consensus 242 ---------------l~~~p~~~~--~~---~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 242 ---------------VANNVHNFV--EH---RYALLELSLLGQDQDD 268 (275)
T ss_dssp ---------------HTTCCTTCH--HH---HHHHHHHHHHHHC---
T ss_pred ---------------HhCCchhHH--HH---HHHHHHHHHHHhhHHH
Confidence 566676666 33 4455566666666554
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=2.5e-13 Score=135.95 Aligned_cols=244 Identities=10% Similarity=0.022 Sum_probs=188.9
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 040576 317 VSWNILLALYVRCKDYCECLRLFDRMIRGDAKP-NEASLMSVLTACANMGV-IDIGQWIHSYIQKCRIKPDVLLSTSLLT 394 (641)
Q Consensus 317 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 394 (641)
..|+.+...+...|++++|+..+++..+. .| +...|..+..++...|+ +++|...++.+++.. +.+...|..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 45666677777777777777777777763 34 34566677777777775 888888887777765 446777888888
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-hccHHH
Q 040576 395 MYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTH-AGMVLE 470 (641)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~ 470 (641)
+|...|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++.+.... +...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 88888888888888888764 56778899999999999999999999999986433 56788888888888 565466
Q ss_pred H-----HHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-------
Q 040576 471 G-----WWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAG--LMRDSEELVSKLPMEAG-PALWGALLSACSTHS------- 534 (641)
Q Consensus 471 a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g------- 534 (641)
| ++.|+++.. +.|+ ...|..+..+|...| ++++|++.+.++...|+ ...+..++..|...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 588888877 4454 678888888898888 68999998888744444 567788888887764
Q ss_pred --CHHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhc
Q 040576 535 --NSELGKIVAQHL-MELEPRDPGPYVLLSNIYASE 567 (641)
Q Consensus 535 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 567 (641)
..++|+.+++++ .+++|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 358999999999 999999999999888876643
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1.6e-12 Score=124.79 Aligned_cols=227 Identities=10% Similarity=-0.056 Sum_probs=181.7
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCchhHHH
Q 040576 315 NVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACAN----MGVIDIGQWIHSYIQKCRIKPDVLLST 390 (641)
Q Consensus 315 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 390 (641)
++.++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4456667777788888888888888888773 344566677777777 888888888888888765 567777
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040576 391 SLLTMYAK----CGVMDLARNVFDNMTE-KNVVSWNSMIMGYGM----HGQGEKALEMFMEMEKRGPTPNDATFICVLSA 461 (641)
Q Consensus 391 ~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 461 (641)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 78888888 8888888888887764 466788888888888 899999999999998875 56677778888
Q ss_pred HHh----hccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 040576 462 CTH----AGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR----AGLMRDSEELVSKLPMEAGPALWGALLSACST- 532 (641)
Q Consensus 462 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~- 532 (641)
+.. .+++++|..+|++..+ .+ +...+..+..+|.. .+++++|++.|++.....+...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 887 8999999999999887 32 45677788889988 99999999999987322346778888888888
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCC
Q 040576 533 ---HSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 533 ---~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
.++.++|...++++.+.+|+++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999988753
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=1.8e-12 Score=122.71 Aligned_cols=200 Identities=11% Similarity=-0.022 Sum_probs=135.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC
Q 040576 356 SVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQ 432 (641)
Q Consensus 356 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 432 (641)
.+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|.+.|+++.+ .+...|..+...|...|+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH
Confidence 33333444444444444444444332 22344555555555666666666666655442 345567777777778888
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHH
Q 040576 433 GEKALEMFMEMEKRGPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELV 511 (641)
Q Consensus 433 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 511 (641)
+++|..+|+++.+.+..|+ ...+..+...+...|++++|.++++++.+ . .+.+...+..++..|...|++++|.+.+
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR-L-NRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888776333443 45677777788888888888888888877 2 2234677788888888999999999888
Q ss_pred HhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 040576 512 SKL-PM-EAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYV 558 (641)
Q Consensus 512 ~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 558 (641)
+++ .. ..+...+..+...+...|+.++|...++++.+..|+++....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 199 DLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 876 22 345667777888888999999999999999999998875543
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=2.5e-13 Score=139.01 Aligned_cols=260 Identities=11% Similarity=-0.035 Sum_probs=175.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCchhHHH
Q 040576 321 ILLALYVRCKDYCECLRLFDRMIRGDAKPN-E----ASLMSVLTACANMGVIDIGQWIHSYIQKC----RI-KPDVLLST 390 (641)
Q Consensus 321 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 390 (641)
.+...+...|++++|+..|+++.+.+ |+ . ..+..+...+...|++++|...++...+. +. +.....+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34455666666666666666666532 22 1 24555555666666666666666655432 11 12345566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHH
Q 040576 391 SLLTMYAKCGVMDLARNVFDNMTE---------KNVVSWNSMIMGYGMHGQ-----------------GEKALEMFMEME 444 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-----------------~~~A~~~~~~m~ 444 (641)
.+...|...|++++|...|++..+ ....++..+...|...|+ +++|+..+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 667777777777777777766542 123467777778888888 888888877765
Q ss_pred HC----CCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 040576 445 KR----GPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK----VEHYGCMVDLLGRAGLMRDSEELVSKLP 515 (641)
Q Consensus 445 ~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 515 (641)
+. +-.+. ..++..+...+...|++++|..++++..+...-.++ ...+..+..+|...|++++|++.+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 11111 236677778888899999999998888762211111 2367788888999999999999888761
Q ss_pred ----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 516 ----MEAG----PALWGALLSACSTHSNSELGKIVAQHLMELEPRD------PGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 516 ----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
...+ ...+..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1111 4567778888999999999999999998865433 3478889999999999999999999985
Q ss_pred h
Q 040576 582 E 582 (641)
Q Consensus 582 ~ 582 (641)
+
T Consensus 371 ~ 371 (411)
T 4a1s_A 371 Q 371 (411)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.7e-13 Score=128.94 Aligned_cols=206 Identities=10% Similarity=0.055 Sum_probs=135.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH
Q 040576 358 LTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGE 434 (641)
Q Consensus 358 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 434 (641)
...+...|++++|..+++.+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp ------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHH
Confidence 333334444444444444443322 22344444555555555555555555555442 34566777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 435 KALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 435 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
+|...++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..++..+.+.|++++|++.++++
T Consensus 109 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 109 EAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888877754 235667777888888888888888888888772 2234667788888888899999998888876
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 040576 515 -P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASE 567 (641)
Q Consensus 515 -~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 567 (641)
. ...+...+..+...+...|++++|...+++++++.|+++..+..++.+....
T Consensus 186 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 186 TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 2 2345678888999999999999999999999999999988887776654433
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=7.6e-13 Score=118.65 Aligned_cols=166 Identities=11% Similarity=0.061 Sum_probs=141.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 040576 416 NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMV 495 (641)
Q Consensus 416 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 495 (641)
+...|..+...|...|++++|+..|++..+..+. +...+..+..++.+.|++++|...+..+... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 5567888999999999999999999998886422 5668888889999999999999999998772 223466777788
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHH
Q 040576 496 DLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEV 573 (641)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 573 (641)
..+...+++++|.+.+++. . .+.+...+..+...+...|++++|+..++++++++|+++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999998876 2 2345678888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCC
Q 040576 574 ENLRRIMKEKE 584 (641)
Q Consensus 574 ~~~~~~m~~~~ 584 (641)
++.+++..+.+
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999986543
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=3.2e-12 Score=118.44 Aligned_cols=204 Identities=10% Similarity=-0.076 Sum_probs=136.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 040576 354 LMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMH 430 (641)
Q Consensus 354 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 430 (641)
+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...|..++..|...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 3334444444444444444444444432 22344555555566666666666666655542 3455677777777788
Q ss_pred -CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHH
Q 040576 431 -GQGEKALEMFMEMEKRGPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSE 508 (641)
Q Consensus 431 -~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 508 (641)
|++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..++.++.+.|++++|.
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 888888888888777333343 456777777888888888888888888772 2233677778888888888888888
Q ss_pred HHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 040576 509 ELVSKL-PME--AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLL 560 (641)
Q Consensus 509 ~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 560 (641)
+.++++ ... .+...+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 888876 222 3566677677778889999999999999988889887655444
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=7.7e-13 Score=130.88 Aligned_cols=261 Identities=12% Similarity=0.003 Sum_probs=178.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-chhHHH
Q 040576 321 ILLALYVRCKDYCECLRLFDRMIRGDAKPN-----EASLMSVLTACANMGVIDIGQWIHSYIQKC----RIKP-DVLLST 390 (641)
Q Consensus 321 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~ 390 (641)
.....+...|++++|...|+++.+.. |+ ...+..+...+...|+++.|...++...+. +..+ ...++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34455566666666666666666532 22 234555566666666666666666554432 1111 244566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHH
Q 040576 391 SLLTMYAKCGVMDLARNVFDNMTE-----KN----VVSWNSMIMGYGMHGQ--------------------GEKALEMFM 441 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A~~~~~ 441 (641)
.+...|...|++++|...+++..+ .+ ..++..+...|...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 677777777777777777776542 22 2367777788888888 888888887
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHH
Q 040576 442 EMEKR----GPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK----VEHYGCMVDLLGRAGLMRDSEELVS 512 (641)
Q Consensus 442 ~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 512 (641)
+.... +..|. ...+..+...+...|++++|...++++.+...-.++ ...+..+...+...|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76542 11111 236777788888999999999999888752211111 3467788889999999999999888
Q ss_pred hC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChHHHHHHHH
Q 040576 513 KL----PMEAG----PALWGALLSACSTHSNSELGKIVAQHLMELEPRD------PGPYVLLSNIYASEGKWDEVENLRR 578 (641)
Q Consensus 513 ~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 578 (641)
+. +..++ ...+..+...+...|++++|...++++++..+.. ...+..++.+|.+.|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76 11122 4466778888999999999999999998875443 3478889999999999999999999
Q ss_pred HhhhC
Q 040576 579 IMKEK 583 (641)
Q Consensus 579 ~m~~~ 583 (641)
++.+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98654
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=3.7e-13 Score=139.98 Aligned_cols=208 Identities=8% Similarity=-0.007 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 040576 367 IDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVM-DLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFME 442 (641)
Q Consensus 367 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~ 442 (641)
++.+...++...... +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444433322 23555666666666666666 666666666542 3355666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhh---------ccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhc--------CCH
Q 040576 443 MEKRGPTPNDATFICVLSACTHA---------GMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRA--------GLM 504 (641)
Q Consensus 443 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~ 504 (641)
..+. .|+...+..+...+... |++++|++.|+++.+ +.| +...|..+..+|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 6654 34555666666666666 666666666666665 223 255566666666666 666
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 040576 505 RDSEELVSKL-PMEA----GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRI 579 (641)
Q Consensus 505 ~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 579 (641)
++|++.|++. ...| +...|..+..+|...|++++|...|+++++++|+++..+..++.++...|++++|++.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666666665 2233 4556666666666666666666666666666666666666666666666666666655444
Q ss_pred h
Q 040576 580 M 580 (641)
Q Consensus 580 m 580 (641)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=1.3e-12 Score=121.78 Aligned_cols=204 Identities=12% Similarity=-0.002 Sum_probs=111.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040576 385 DVLLSTSLLTMYAKCGVMDLARNVFDNMTE----KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLS 460 (641)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 460 (641)
++..+......|...|++++|...|++..+ ++...+..+..++...|++++|+..|++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 344555555555666666666666655442 34444555555566666666666666665553211 2334555555
Q ss_pred HHHhhccHHHHHHHHHHhHHhhCCCCc-h-------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 040576 461 ACTHAGMVLEGWWYFDLMQRIYKIEPK-V-------EHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG---PALWGALLS 528 (641)
Q Consensus 461 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~ 528 (641)
.+...|++++|...+++..+ ..|+ . ..|..+...+...|++++|++.|+++ ...|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 55566666666666665555 1222 2 33444555555555555555555554 23343 223444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccC
Q 040576 529 ACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENC 608 (641)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (641)
++.. .+...++++..+.+.++..|.. ......+.+++|+..+++. .+++
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a------------------------~~l~ 210 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEA------------------------VTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHH------------------------HHHC
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHH------------------------hhcC
Confidence 4432 2333444555554444333322 2223344559999999998 7889
Q ss_pred CCCchhhHHHHHHHHHH
Q 040576 609 PPHRKCIVYSMLGEIGA 625 (641)
Q Consensus 609 p~~~~~~~~~~l~~l~~ 625 (641)
|++.. +...|+.+..
T Consensus 211 p~~~~--~~~~l~~i~~ 225 (228)
T 4i17_A 211 PNRTE--IKQMQDQVKA 225 (228)
T ss_dssp TTCHH--HHHHHHHHHT
T ss_pred CCCHH--HHHHHHHHHH
Confidence 99999 8888887654
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=9.7e-13 Score=134.18 Aligned_cols=284 Identities=10% Similarity=0.007 Sum_probs=184.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC--C-C----cchHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 040576 288 WNCMIDGYAKIGNVTSARNCFDRMCM--R-N----VVSWNILLALYVRCKDYCECLRLFDRMIRG----DAKPN-EASLM 355 (641)
Q Consensus 288 ~~~li~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 355 (641)
+..+...+...|++++|...|++... | + ...|..+...|...|++++|...+++.... +-.|. ..++.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34444555555555555555555421 1 1 134555666666666666666666654331 11111 23455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC----CC-CchhHHHHHHHHHHhcCC--------------------HHHHHHHHh
Q 040576 356 SVLTACANMGVIDIGQWIHSYIQKCR----IK-PDVLLSTSLLTMYAKCGV--------------------MDLARNVFD 410 (641)
Q Consensus 356 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 410 (641)
.+...+...|++++|...+....+.. -. ....++..+...|...|+ +++|...++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 55566666666666666666554421 00 013456667777777777 777777776
Q ss_pred hcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhhccHHHHHHHHH
Q 040576 411 NMTE-----K----NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGP-TPN----DATFICVLSACTHAGMVLEGWWYFD 476 (641)
Q Consensus 411 ~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 476 (641)
+..+ . ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 5542 1 134677888888999999999999988765310 112 2367778888999999999999999
Q ss_pred HhHHhhCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 040576 477 LMQRIYKIEPK----VEHYGCMVDLLGRAGLMRDSEELVSKLP----MEAG----PALWGALLSACSTHSNSELGKIVAQ 544 (641)
Q Consensus 477 ~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 544 (641)
+......-.++ ..++..+...|...|++++|.+.+++.. ..++ ...+..+...+...|++++|...++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88752211111 4577788899999999999999988761 1122 4467778888999999999999999
Q ss_pred HHHhcCC------CCCchHHHHHHHHHhcCChH
Q 040576 545 HLMELEP------RDPGPYVLLSNIYASEGKWD 571 (641)
Q Consensus 545 ~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 571 (641)
+++++.+ ....++..++.+|...|+..
T Consensus 332 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 332 KHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 9988643 23457888888888888764
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=4.7e-13 Score=139.18 Aligned_cols=210 Identities=12% Similarity=-0.015 Sum_probs=178.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 040576 330 KDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVI-DIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNV 408 (641)
Q Consensus 330 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 408 (641)
+++++++..+++.... .+.+...+..+..++...|++ ++|...++.+.+.. +.+...+..+..+|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3477888888876653 234677888899999999999 99999999999875 44688999999999999999999999
Q ss_pred HhhcCC--CChhHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh--------ccHH
Q 040576 409 FDNMTE--KNVVSWNSMIMGYGMH---------GQGEKALEMFMEMEKRGPTPNDATFICVLSACTHA--------GMVL 469 (641)
Q Consensus 409 ~~~~~~--~~~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------g~~~ 469 (641)
|++..+ |+...|..+...|... |++++|+..|++..+.... +...+..+..+|... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999874 7778899999999999 9999999999999986422 577888999999998 9999
Q ss_pred HHHHHHHHhHHhhCCCC----chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 040576 470 EGWWYFDLMQRIYKIEP----KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVA 543 (641)
Q Consensus 470 ~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (641)
+|...|+++.+ +.| +...|..+..+|.+.|++++|++.|++. ...| +...+..+...+...|++++|...+
T Consensus 239 ~A~~~~~~al~---~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEK---VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH---HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH---hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988 345 5788999999999999999999999987 2334 4667888888899999988888765
Q ss_pred HH
Q 040576 544 QH 545 (641)
Q Consensus 544 ~~ 545 (641)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=1.7e-12 Score=132.87 Aligned_cols=263 Identities=10% Similarity=0.004 Sum_probs=170.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC--C-Cc----chHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 040576 290 CMIDGYAKIGNVTSARNCFDRMCM--R-NV----VSWNILLALYVRCKDYCECLRLFDRMIRG----DAKP-NEASLMSV 357 (641)
Q Consensus 290 ~li~~~~~~~~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l 357 (641)
.+...+...|++++|+..|+++.. + +. ..|..+...|...|++++|+..+++..+. +-.| ....+..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344445555555555555555421 1 11 24555556666666666666666655431 1111 22345555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc----CC-CCchhHHHHHHHHHHhcCC-----------------HHHHHHHHhhcCC-
Q 040576 358 LTACANMGVIDIGQWIHSYIQKC----RI-KPDVLLSTSLLTMYAKCGV-----------------MDLARNVFDNMTE- 414 (641)
Q Consensus 358 l~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~- 414 (641)
...+...|++++|...+..+.+. +- +....++..+...|...|+ +++|.+.+++..+
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55666666666666666655443 11 1124456667777777777 7777777766542
Q ss_pred ----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhhccHHHHHHHHHHhHHh
Q 040576 415 ----K----NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPT-PN----DATFICVLSACTHAGMVLEGWWYFDLMQRI 481 (641)
Q Consensus 415 ----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 481 (641)
. ....+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++++...
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1 2246778888899999999999999887663111 12 226777888899999999999999988762
Q ss_pred hCCCC----chHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040576 482 YKIEP----KVEHYGCMVDLLGRAGLMRDSEELVSKLP----MEAG----PALWGALLSACSTHSNSELGKIVAQHLMEL 549 (641)
Q Consensus 482 ~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 549 (641)
..-.. ....+..+..+|...|++++|.+.+++.. ..++ ...+..+...+...|++++|...+++++++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 21111 14677888999999999999999998761 1112 346777888899999999999999999887
Q ss_pred CCC
Q 040576 550 EPR 552 (641)
Q Consensus 550 ~p~ 552 (641)
.+.
T Consensus 373 ~~~ 375 (411)
T 4a1s_A 373 AXX 375 (411)
T ss_dssp CCH
T ss_pred Hhh
Confidence 654
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=9.9e-10 Score=117.32 Aligned_cols=414 Identities=11% Similarity=0.023 Sum_probs=252.4
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCC---chhHHHHHHHHHHhC-CCCChh
Q 040576 118 EPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRS---LREGKKVHARIVKCG-FELDLF 193 (641)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~ 193 (641)
+.|...|..++..+.+.+.+..+..+|+ .+... .+.+...|...+..-.+.++ ++.+..+|+..+... ..|++.
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyE-raL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFD-KLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 4566777777777777777777777777 44443 34445556666666666666 777777777776643 136666
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHhc-----CC-CC-CeeHHHHHHHHHH---------hCCChHHHHHHHhhC
Q 040576 194 VRNSLIHMYSVCGEV--------LDARKVFED-----GP-VW-DLVTWNSMIDGYV---------KNREVGFARELFDFM 249 (641)
Q Consensus 194 ~~~~li~~~~~~g~~--------~~A~~~~~~-----~~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m 249 (641)
.|...+....+.++. +...++|+. +. .+ +...|...+.-.. ..++++.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 776666655554443 223355554 22 22 3345666655432 223455666667666
Q ss_pred CCCCchhHHHHHHHHh---cCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhc-------CC------
Q 040576 250 PERDIFTWNSMISGYV---DVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRM-------CM------ 313 (641)
Q Consensus 250 ~~~~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-------~~------ 313 (641)
..-....+..+-..|. +.-+...+.+++.+ ....++.|...+.++ ..
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 3211111111111110 00000001111110 011222333333321 00
Q ss_pred --------C--C------cchHHHHHHHHHHcC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 040576 314 --------R--N------VVSWNILLALYVRCK-------DYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIG 370 (641)
Q Consensus 314 --------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 370 (641)
| + ...|...+.---..+ ..+.+..+|++.... ++-+...|......+...|+.+.|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHH
Confidence 0 0 123444443322222 123455678777764 344666777777777788888888
Q ss_pred H-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------CC------------hhHHHHHH
Q 040576 371 Q-WIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE-------------KN------------VVSWNSMI 424 (641)
Q Consensus 371 ~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li 424 (641)
. .+++..... ++.+...+-..+....+.|+++.|.++|+++.+ |+ ...|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 6 999998874 355677777888888899999999999988763 21 23688888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh-ccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCC
Q 040576 425 MGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHA-GMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGL 503 (641)
Q Consensus 425 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 503 (641)
....+.|+.+.|..+|.++.+.-..+....|...+..-.+. ++.+.|..+|+...+.+ +-+...+...++.....|+
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCC
Confidence 88888899999999999998861122334443333322333 55899999999998843 3345667788888889999
Q ss_pred HHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 504 MRDSEELVSKLP-MEA----GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 504 ~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
.+.|..+|++.. ..| ....|...+.--...|+.+.+..+.+++.+..|+++
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999862 223 245788888888899999999999999999999875
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=5.7e-12 Score=127.58 Aligned_cols=222 Identities=9% Similarity=-0.033 Sum_probs=121.0
Q ss_pred HHHccCCHHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC-----hhHHHHHH
Q 040576 360 ACANMGVIDIGQWIHSYIQKC----RIKP-DVLLSTSLLTMYAKCGVMDLARNVFDNMTE-----KN-----VVSWNSMI 424 (641)
Q Consensus 360 ~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li 424 (641)
.+...|++++|...+....+. +-.+ ...++..+..+|...|++++|...+++..+ ++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344555555555555555442 1011 234455555556666666665555554432 11 23556666
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhhccHHHHHHHHHHhHHhh---CCCC-chHHHHHHH
Q 040576 425 MGYGMHGQGEKALEMFMEMEKRGPT-PN----DATFICVLSACTHAGMVLEGWWYFDLMQRIY---KIEP-KVEHYGCMV 495 (641)
Q Consensus 425 ~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li 495 (641)
..|...|++++|+..|++..+.... ++ ..++..+...|...|++++|.+.+++..+.. +..| ...++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 6666666777666666665542100 11 1255566666667777777777766665411 2212 245566666
Q ss_pred HHHhhcCCHHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 496 DLLGRAGLMRDSEELVSKLP----M--EAG-PALWGALLSACSTHSN---SELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
.+|.+.|++++|.+.+++.- . .|. ...+..+...+...|+ .++|...+++. ...|.....+..++.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 67777777777776666541 0 111 1123445555666666 55555555544 222333446667777777
Q ss_pred hcCChHHHHHHHHHhhh
Q 040576 566 SEGKWDEVENLRRIMKE 582 (641)
Q Consensus 566 ~~g~~~~A~~~~~~m~~ 582 (641)
..|++++|.+.+++..+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777777777777643
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=1.2e-11 Score=122.30 Aligned_cols=262 Identities=10% Similarity=0.015 Sum_probs=166.6
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--C-C----cchHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 040576 291 MIDGYAKIGNVTSARNCFDRMCM--R-N----VVSWNILLALYVRCKDYCECLRLFDRMIRG----DAKP-NEASLMSVL 358 (641)
Q Consensus 291 li~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll 358 (641)
....+...|++++|...|+++.. | + ...|..+...|...|++++|...+++..+. +..| ....+..+.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34445555566666555555511 1 1 234555666666666666666666655431 1111 123455556
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCC-C----chhHHHHHHHHHHhcCC--------------------HHHHHHHHhhcC
Q 040576 359 TACANMGVIDIGQWIHSYIQKCRIK-P----DVLLSTSLLTMYAKCGV--------------------MDLARNVFDNMT 413 (641)
Q Consensus 359 ~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~ 413 (641)
..+...|++++|...+....+.... + ...++..+...|...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6666667777776666665442100 1 13356667777777777 777777776653
Q ss_pred C-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhhccHHHHHHHHHHhH
Q 040576 414 E-----K----NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGP-TPN----DATFICVLSACTHAGMVLEGWWYFDLMQ 479 (641)
Q Consensus 414 ~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 479 (641)
+ . ....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 1 134677788888889999999998888765310 111 2367778888889999999999998887
Q ss_pred HhhCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040576 480 RIYKIEPK----VEHYGCMVDLLGRAGLMRDSEELVSKLP----MEAG----PALWGALLSACSTHSNSELGKIVAQHLM 547 (641)
Q Consensus 480 ~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 547 (641)
....-..+ ...+..+...|...|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 52211111 4567788889999999999999988761 1122 3366778888999999999999999999
Q ss_pred hcCCC
Q 040576 548 ELEPR 552 (641)
Q Consensus 548 ~~~p~ 552 (641)
++.+.
T Consensus 331 ~~~~~ 335 (338)
T 3ro2_A 331 EISRE 335 (338)
T ss_dssp HC---
T ss_pred HHHHh
Confidence 87654
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=6.1e-12 Score=136.00 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=143.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHH
Q 040576 416 NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP-NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGC 493 (641)
Q Consensus 416 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 493 (641)
+..+|+.|...|.+.|++++|+..|++..+. .| +...+..+..+|.+.|++++|++.|+++.+ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 3467888999999999999999999998885 44 466888899999999999999999999988 4565 778899
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChH
Q 040576 494 MVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWD 571 (641)
Q Consensus 494 li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 571 (641)
+..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..|+++++++|+++..+..++.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999987 3344 46789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhC
Q 040576 572 EVENLRRIMKEK 583 (641)
Q Consensus 572 ~A~~~~~~m~~~ 583 (641)
+|.+.++++.+.
T Consensus 163 ~A~~~~~kal~l 174 (723)
T 4gyw_A 163 DYDERMKKLVSI 174 (723)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=1.1e-11 Score=110.89 Aligned_cols=167 Identities=11% Similarity=0.002 Sum_probs=138.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040576 385 DVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSA 461 (641)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 461 (641)
++.+|..+...|...|++++|.+.|++..+ .+..+|..+..+|...|++++|+..+.+....... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 566788888888888888888888888763 46678888999999999999999999998876432 55677777788
Q ss_pred HHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHH
Q 040576 462 CTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PME-AGPALWGALLSACSTHSNSELG 539 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a 539 (641)
+...++++.|...+.+.... .+.+...+..+..+|.+.|++++|++.|++. ... .+...|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998872 2334677888999999999999999999887 223 4567889999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 040576 540 KIVAQHLMELEPRDP 554 (641)
Q Consensus 540 ~~~~~~~~~~~p~~~ 554 (641)
+..|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998764
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=4.6e-11 Score=116.75 Aligned_cols=235 Identities=9% Similarity=0.039 Sum_probs=146.4
Q ss_pred chHHHHHHHHHHc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------ccCCH-------HHHHHHH
Q 040576 317 VSWNILLALYVRC----KDY----CECLRLFDRMIRGDAKPNEASLMSVLTACA-------NMGVI-------DIGQWIH 374 (641)
Q Consensus 317 ~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~a~~~~ 374 (641)
..|...+.--.+. ++. ++|..+|++..... +-+...|..++..+. ..|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 3466666554433 233 56777777777632 334455666665554 24665 7777777
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 040576 375 SYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE--K-NVV-SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP 450 (641)
Q Consensus 375 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 450 (641)
+...+.-.+.+...|..++..+.+.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+... +
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~ 166 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-T 166 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-C
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-C
Confidence 7777631133455677777777777777777777777664 2 233 677777777777777777777777776532 2
Q ss_pred CHHHHHHHHHHHH-hhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC--CHHHH
Q 040576 451 NDATFICVLSACT-HAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLP----MEA--GPALW 523 (641)
Q Consensus 451 ~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~ 523 (641)
+...|........ ..|++++|..+|+.+.+.. +-+...|..++..+.+.|++++|..+|++.- ..| ....|
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3334433322221 2577777777777776622 2235666777777777777777777777651 133 34567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 040576 524 GALLSACSTHSNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 524 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
..++......|+.+.|..+++++.+..|+++.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 77777777777777777777777777776543
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=1.9e-11 Score=123.76 Aligned_cols=229 Identities=7% Similarity=-0.017 Sum_probs=173.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--C----CCchhHHH
Q 040576 322 LLALYVRCKDYCECLRLFDRMIRG----DAKP-NEASLMSVLTACANMGVIDIGQWIHSYIQKCR--I----KPDVLLST 390 (641)
Q Consensus 322 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~~~ 390 (641)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677888888888888888763 1111 23467777788888888888888888776531 1 11245777
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 040576 391 SLLTMYAKCGVMDLARNVFDNMTE-----KN----VVSWNSMIMGYGMHGQGEKALEMFMEMEKR----GPTPN-DATFI 456 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~ 456 (641)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888899999999999999887763 22 247888999999999999999999998772 33233 45788
Q ss_pred HHHHHHHhhccHHHHHHHHHHhHHhhC---CCCchHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 040576 457 CVLSACTHAGMVLEGWWYFDLMQRIYK---IEPKVEHYGCMVDLLGRAGL---MRDSEELVSKLPMEAGP-ALWGALLSA 529 (641)
Q Consensus 457 ~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~l~~~ 529 (641)
.+...+...|++++|...+++..+... -+.....+..+...|...|+ +++|+.++++....|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 899999999999999999999876221 11123345678888999999 99999999998644443 366778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 040576 530 CSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 530 ~~~~g~~~~a~~~~~~~~~~~ 550 (641)
|...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=1.4e-12 Score=127.66 Aligned_cols=235 Identities=12% Similarity=0.106 Sum_probs=119.2
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-
Q 040576 317 VSWNILLALYVRCKDYCECLRLFDRMIRG-------DAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKC------RI- 382 (641)
Q Consensus 317 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~- 382 (641)
.+|..+...|...|++++|..+++++.+. ........+..+...+...|++++|...++.+.+. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45777778888888888888888887662 11222345556666666677777777666665543 11
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHH
Q 040576 383 KPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKR------GPTPN-DATF 455 (641)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~ 455 (641)
+....++..+...|...|++++|...|+ ++.+. +-.|+ ...+
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCK-------------------------------RALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHH-------------------------------HHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------------HHHHHHHHhcCCCChHHHHHH
Confidence 1123344444555555555555555444 44332 11111 2234
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhHHhh-----CCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCC----------CCCC
Q 040576 456 ICVLSACTHAGMVLEGWWYFDLMQRIY-----KIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKLP----------MEAG 519 (641)
Q Consensus 456 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~~~ 519 (641)
..+...+...|++++|.++++++.+.. +..|. ...+..+..+|...|++++|.+.++++. ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 444555555555555555555554410 11121 3344455555555555555555555431 0000
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 520 -------PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 520 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
...+..+...+...+.+.++...++.+....|..+..+..++.+|.+.|++++|.+.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111112222234445555566666666666777777888888888888888888888887743
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=2.5e-10 Score=111.52 Aligned_cols=245 Identities=10% Similarity=0.004 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHH
Q 040576 368 DIGQWIHSYIQKCRIKPDVLLSTSLLTMYA-------KCGVM-------DLARNVFDNMTE---K-NVVSWNSMIMGYGM 429 (641)
Q Consensus 368 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 429 (641)
+.|..+|+.+.+.. +.+...|..++..+. ..|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777787777753 456677777777665 34775 888888887654 2 44578888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHh-hcCCHHH
Q 040576 430 HGQGEKALEMFMEMEKRGPTPN-DA-TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLG-RAGLMRD 506 (641)
Q Consensus 430 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 506 (641)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|+++.+ . .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~-~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-D-ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-S-TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 88999999999888874 443 33 677888888888889999988888876 1 1233445544433322 3688888
Q ss_pred HHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 507 SEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMEL---EPR-DPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 507 A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
|.++|++. . .+.+...|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888876 1 1235677888888888888999999999988885 443 5567888888888889999998888888
Q ss_pred hhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHH
Q 040576 581 KEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLG 621 (641)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~ 621 (641)
.+..+.............. -++..++|++.+ ...-||
T Consensus 268 ~~~~p~~~~~~~~~~~~~r--~~~l~~~P~~~~--~ln~lg 304 (308)
T 2ond_A 268 FTAFREEYEGKETALLVDR--YKFMDLYPCSAS--ELKALG 304 (308)
T ss_dssp HHHTTTTTSSCHHHHHHTT--TCBTTBCSSCHH--HHHTTT
T ss_pred HHHcccccccchHHHHHHH--HHhcccCCCCHH--HHHhcC
Confidence 7766543222111101000 123567888877 544443
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=3.3e-09 Score=113.30 Aligned_cols=434 Identities=10% Similarity=0.030 Sum_probs=279.7
Q ss_pred CCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---HHHH
Q 040576 135 NDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGE---VLDA 211 (641)
Q Consensus 135 g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A 211 (641)
....+.+..|++.+... +-|..+|..++..+.+.+.++.++.+++.+... ++.....|...+..-.+.|. ++.+
T Consensus 46 ~~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp CCCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred cCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 34566676777566664 568889999999999999999999999999987 46677889999999888888 9999
Q ss_pred HHHHhcCC-----CCCeeHHHHHHHHHHhCCCh--------HHHHHHHhhC-----C-CCC-chhHHHHHHHHhc-----
Q 040576 212 RKVFEDGP-----VWDLVTWNSMIDGYVKNREV--------GFARELFDFM-----P-ERD-IFTWNSMISGYVD----- 266 (641)
Q Consensus 212 ~~~~~~~~-----~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m-----~-~~~-~~~~~~ll~~~~~----- 266 (641)
.++|++.. .+++..|...+.-..+.++. +.+.++|+.. . .++ ...|...+.-...
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 99999833 26777888887766555543 2333566653 2 333 2355555543321
Q ss_pred ----CCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 040576 267 ----VGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRM 342 (641)
Q Consensus 267 ----~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 342 (641)
.++++.+..+|+.+......-+..+-..|.. ++.. . +..+...++.- ...+++.|...+.++
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~---fe~~-------~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ---WEQD-------V--NQLTARRHIGE--LSAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH---HHHH-------H--CTTTHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH---HHHh-------c--CcchHHHHHHH--hhHHHHHHHHHHHHH
Confidence 2345566677776664211111111111111 0000 0 01111111111 112344444555443
Q ss_pred HH--CCCC---------------C-----C---HHHHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCchhHHH
Q 040576 343 IR--GDAK---------------P-----N---EASLMSVLTACANMG-------VIDIGQWIHSYIQKCRIKPDVLLST 390 (641)
Q Consensus 343 ~~--~g~~---------------p-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~ 390 (641)
.. .++. | + ...|...+.---..+ ..+.+..+|++.+.. ++....+|-
T Consensus 269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~ 347 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWF 347 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHH
T ss_pred HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHH
Confidence 22 1111 1 1 123433333222221 123456678888775 355778888
Q ss_pred HHHHHHHhcCCHHHHH-HHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC------
Q 040576 391 SLLTMYAKCGVMDLAR-NVFDNMTE--K-NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGP---------TPN------ 451 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---------~p~------ 451 (641)
..+..+...|+.++|. ++|++... | +...|...+....+.|++++|..+|+++.+... .|+
T Consensus 348 ~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 348 NMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 8888888899999996 99988764 3 555678888889999999999999999886410 132
Q ss_pred ------HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhc-CCHHHHHHHHHhC--CCCCCHHH
Q 040576 452 ------DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRA-GLMRDSEELVSKL--PMEAGPAL 522 (641)
Q Consensus 452 ------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~--~~~~~~~~ 522 (641)
...|...+....+.|+.+.|..+|..+.+..+ ......|...+..-.+. ++.+.|..+|+.. ....+...
T Consensus 428 ~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~ 506 (679)
T 4e6h_A 428 QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHH
T ss_pred hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHH
Confidence 23567777777888999999999999988201 11234444444433444 4589999999876 22345667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 040576 523 WGALLSACSTHSNSELGKIVAQHLMELEPR---DPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEK 587 (641)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 587 (641)
|...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+.++.+++.+..+..
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 778888888899999999999999998874 34567777777788999999999999997766543
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=2.9e-11 Score=108.02 Aligned_cols=161 Identities=11% Similarity=-0.024 Sum_probs=103.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHh
Q 040576 420 WNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLG 499 (641)
Q Consensus 420 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 499 (641)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444555555555555555555554432 123445555555566666666666666665551 1223455556666666
Q ss_pred hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 040576 500 RAGLMRDSEELVSKL--PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLR 577 (641)
Q Consensus 500 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (641)
..|++++|.+.++++ ..+.+...+..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666654 122345667777777888888888888888888888888888888888888888888888888
Q ss_pred HHhhhC
Q 040576 578 RIMKEK 583 (641)
Q Consensus 578 ~~m~~~ 583 (641)
+++.+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=8.3e-10 Score=111.10 Aligned_cols=261 Identities=9% Similarity=-0.040 Sum_probs=162.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHcCC---CC--chhHHHHH
Q 040576 322 LLALYVRCKDYCECLRLFDRMIRGDAKPNEA----SLMSVLTACANMGVIDIGQWIHSYIQKCRI---KP--DVLLSTSL 392 (641)
Q Consensus 322 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 392 (641)
....+...|++++|...+++........+.. .+..+...+...|+++.|...+.......- .+ ....+..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777777777666543222221 344445556667777777777666554210 01 12234556
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHH
Q 040576 393 LTMYAKCGVMDLARNVFDNMTE-------K----NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPT--P--NDATFIC 457 (641)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~~ 457 (641)
...+...|++++|...+++..+ + ....+..+...+...|++++|...+++..+.... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6677777888877777776542 1 1234566777788888888888888887653221 1 1245666
Q ss_pred HHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHH
Q 040576 458 VLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYG-----CMVDLLGRAGLMRDSEELVSKLP-MEAG-----PALWGAL 526 (641)
Q Consensus 458 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l 526 (641)
+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77778888888888888888765222111111111 23344678888888888888772 1121 2245566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 527 LSACSTHSNSELGKIVAQHLMELEPRD------PGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
...+...|++++|...++++.+..+.. ...+..++.+|...|++++|...+++..+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777888888888888888887654321 13566778888888888888888888754
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=9.7e-12 Score=121.56 Aligned_cols=238 Identities=12% Similarity=0.067 Sum_probs=151.1
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhcCC--------C---CcchHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 040576 285 VVSWNCMIDGYAKIGNVTSARNCFDRMCM--------R---NVVSWNILLALYVRCKDYCECLRLFDRMIRG------DA 347 (641)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 347 (641)
..++..+...+...|++++|..+|+++.. . ....+..+...|...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 56788999999999999999999998843 1 2356788899999999999999999998764 22
Q ss_pred CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHH
Q 040576 348 KP-NEASLMSVLTACANMGVIDIGQWIHSYIQKC------RIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSW 420 (641)
Q Consensus 348 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 420 (641)
.| ....+..+...+...|++++|...++.+.+. +..+. ....+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHHH
Confidence 23 3457788888999999999999999888764 11111 12234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhh------CCCCc
Q 040576 421 NSMIMGYGMHGQGEKALEMFMEMEKR------GPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIY------KIEPK 487 (641)
Q Consensus 421 ~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~ 487 (641)
..+...|...|++++|+.+|+++.+. +..|+ ..++..+...+...|++++|.++++++.+.. ...+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 44455555555555555555555442 11222 2355666667777777777777777766411 11111
Q ss_pred -------hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040576 488 -------VEHYGCMVDLLGRAGLMRDSEELVSKLP-MEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPR 552 (641)
Q Consensus 488 -------~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 552 (641)
...+..+...+...+.+.+|...++... ..|+ ..++..+..+|...|++++|...+++++++.|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122223333445555566666666653 2233 456788888999999999999999999988765
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=2.2e-11 Score=131.61 Aligned_cols=157 Identities=10% Similarity=0.075 Sum_probs=141.4
Q ss_pred CCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHH
Q 040576 449 TPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWG 524 (641)
Q Consensus 449 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~ 524 (641)
.|+ ...|+.+...+.+.|++++|++.|+++.+ +.|+ ...|..+..+|.+.|++++|++.|++. ...|+ ...|.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 454 45899999999999999999999999988 4565 788999999999999999999999987 33454 77899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccc
Q 040576 525 ALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESI 604 (641)
Q Consensus 525 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 604 (641)
.+..++...|++++|+..|+++++++|+++..|..++.+|.+.|++++|++.+++.
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A------------------------ 137 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA------------------------ 137 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhhHHHHHHHHHHHHHhhhccc
Q 040576 605 VENCPPHRKCIVYSMLGEIGAQMKMCRRDV 634 (641)
Q Consensus 605 ~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~ 634 (641)
.+++|++.. ++..|+.++..+++..++.
T Consensus 138 l~l~P~~~~--a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 138 LKLKPDFPD--AYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHCSCCHH--HHHHHHHHHHHTTCCTTHH
T ss_pred HHhCCCChH--HHhhhhhHHHhcccHHHHH
Confidence 788999999 9999999998888776654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.1e-10 Score=117.84 Aligned_cols=221 Identities=8% Similarity=-0.057 Sum_probs=125.5
Q ss_pred HHccCCHHHHHHHHHHHHHcC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC-----hhHHHHHHH
Q 040576 361 CANMGVIDIGQWIHSYIQKCR--IK---PDVLLSTSLLTMYAKCGVMDLARNVFDNMTE-----KN-----VVSWNSMIM 425 (641)
Q Consensus 361 ~~~~g~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 425 (641)
+...|++++|...+....+.. .. ....++..+..+|...|+++.|...+++..+ ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445555555555555554321 00 0133455556666666666666665554431 11 235566667
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhh---CCCCchHHHHHHHHH
Q 040576 426 GYGMHGQGEKALEMFMEMEKR----GPTP-NDATFICVLSACTHAGMVLEGWWYFDLMQRIY---KIEPKVEHYGCMVDL 497 (641)
Q Consensus 426 ~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~ 497 (641)
.|...|++++|+..|++..+. +-.+ ...++..+...+...|++++|.+.+++..... +.+....++..+..+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 777777777777777665542 1111 12355666667777777777777777765411 222224556667777
Q ss_pred HhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 040576 498 LGRAGLMRDSEELVSKL----PM--EAG-PALWGALLSACSTHSN---SELGKIVAQHLMELEPRDPGPYVLLSNIYASE 567 (641)
Q Consensus 498 ~~~~g~~~~A~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 567 (641)
|.+.|++++|.+.+++. +. .+. ...+..+...+...++ +++|...+++. ...|.....+..++.+|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 77777777777777664 11 222 2234444445566666 56666555541 11233334666788888888
Q ss_pred CChHHHHHHHHHhhh
Q 040576 568 GKWDEVENLRRIMKE 582 (641)
Q Consensus 568 g~~~~A~~~~~~m~~ 582 (641)
|++++|.+.+++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877643
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=2.7e-10 Score=108.31 Aligned_cols=206 Identities=9% Similarity=-0.005 Sum_probs=135.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 040576 385 DVLLSTSLLTMYAKCGVMDLARNVFDNMTE--K-N---VVSWNSMIMGYGMHGQGEKALEMFMEMEKRGP-TPN-DATFI 456 (641)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~ 456 (641)
+...+-.+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555566666677777777777776653 2 2 34566666777777777777777777766422 112 23455
Q ss_pred HHHHHHHh--------hccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 040576 457 CVLSACTH--------AGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALL 527 (641)
Q Consensus 457 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 527 (641)
.+..++.. .|++++|...|+++.+. .|+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55566666 67777777777776662 232 12221111111000000 11245677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------CChHHHHHHHHHhhhCCCcccCceEEE
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPRDP---GPYVLLSNIYASE----------GKWDEVENLRRIMKEKELEKAVGSSLV 594 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~ 594 (641)
..+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~-------------- 221 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL-------------- 221 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH--------------
Confidence 889999999999999999999999854 4788999999877 9999999999999
Q ss_pred EeeeeecccccccCCCCc---hhhHHHHHHHHHHHHHhhhccc
Q 040576 595 HPGEFASESIVENCPPHR---KCIVYSMLGEIGAQMKMCRRDV 634 (641)
Q Consensus 595 ~~~~~~~~~~~~~~p~~~---~~~~~~~l~~l~~~~~~~~~~~ 634 (641)
.+..|++. . ....|+.+...+++..+..
T Consensus 222 ----------~~~~p~~~~~~~--a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 222 ----------LQIFPDSPLLRT--AEELYTRARQRLTELEGDA 252 (261)
T ss_dssp ----------HHHCTTCTHHHH--HHHHHHHHHHHHHHHHTCT
T ss_pred ----------HHHCCCChHHHH--HHHHHHHHHHHHHHhhhhh
Confidence 56677774 5 6777888888887776553
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=1.9e-10 Score=106.85 Aligned_cols=205 Identities=11% Similarity=0.016 Sum_probs=161.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 040576 349 PNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIM 425 (641)
Q Consensus 349 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 425 (641)
.|+..+......+...|++++|...|+...+...+++...+..+..+|...|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888899999999999999999999987446777777799999999999999999998874 34568899999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc---hHHHHHHH
Q 040576 426 GYGMHGQGEKALEMFMEMEKRGPTPND-------ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK---VEHYGCMV 495 (641)
Q Consensus 426 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 495 (641)
+|...|++++|+..|++..+.... +. ..|..+...+...|++++|++.|+++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 999999999999999999986322 34 4577788888999999999999999977 5565 56777888
Q ss_pred HHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 040576 496 DLLGRAGLM--RDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIY 564 (641)
Q Consensus 496 ~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 564 (641)
.+|...|+. ++|..+ . ..+...+.... ....+.+++|...++++++++|+++.....+..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888766643 222221 1 22344444333 34556799999999999999999988877776654
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=2.9e-10 Score=101.39 Aligned_cols=168 Identities=9% Similarity=-0.072 Sum_probs=143.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040576 386 VLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSAC 462 (641)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 462 (641)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566778889999999999999999875 466788899999999999999999999998863 33667888889999
Q ss_pred HhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040576 463 THAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGK 540 (641)
Q Consensus 463 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~ 540 (641)
...|++++|.++++++.+. .+.+...+..+...+...|++++|.+.++++ . ...+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999872 3345778888999999999999999999987 2 2345778889999999999999999
Q ss_pred HHHHHHHhcCCCCCch
Q 040576 541 IVAQHLMELEPRDPGP 556 (641)
Q Consensus 541 ~~~~~~~~~~p~~~~~ 556 (641)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999999887643
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=1.3e-09 Score=109.80 Aligned_cols=228 Identities=11% Similarity=0.046 Sum_probs=171.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CC-chhHH
Q 040576 321 ILLALYVRCKDYCECLRLFDRMIRGDA-KPN----EASLMSVLTACANMGVIDIGQWIHSYIQKCRI-----KP-DVLLS 389 (641)
Q Consensus 321 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~-~~~~~ 389 (641)
.....+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+....+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556788888888888888875311 122 34567777788888888888888887765311 11 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 040576 390 TSLLTMYAKCGVMDLARNVFDNMTE-----KN----VVSWNSMIMGYGMHGQGEKALEMFMEMEK-----RGPTPNDATF 455 (641)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~ 455 (641)
+.+..+|...|++++|.+.|++..+ ++ ..++..+..+|...|++++|+..|++..+ .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 7888889999999999998887653 22 24678889999999999999999999877 4322 35678
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhHHhhCCC--C-chHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHH
Q 040576 456 ICVLSACTHAGMVLEGWWYFDLMQRIYKIE--P-KVEHYGCMVDLLGRAGL---MRDSEELVSKLPMEAGP-ALWGALLS 528 (641)
Q Consensus 456 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~l~~ 528 (641)
..+...+.+.|++++|..++++..+...-. | ....+..+...|...|+ +.+|+..+++....|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888999999999999999999998733221 2 24456677778888888 99999999997544443 35667888
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 040576 529 ACSTHSNSELGKIVAQHLMEL 549 (641)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~ 549 (641)
.|...|++++|...++++++.
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999998764
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=1.4e-11 Score=105.96 Aligned_cols=142 Identities=10% Similarity=-0.022 Sum_probs=115.5
Q ss_pred HHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 040576 458 VLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHS 534 (641)
Q Consensus 458 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 534 (641)
|...+...|++++|++.++.... ..|+ ...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44566778899999998888755 3444 445667889999999999999999987 3334 5778999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHH-HHHhhhCCCcccCceEEEEeeeeecccccccCCCCch
Q 040576 535 NSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENL-RRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRK 613 (641)
Q Consensus 535 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 613 (641)
++++|+..|+++++++|+++.+|..++.+|.+.|++++|.+. +++. .+++|++..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a------------------------l~l~P~~~~ 135 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA------------------------AKLFPGSPA 135 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH------------------------HHHSTTCHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH------------------------HHhCcCCHH
Confidence 999999999999999999999999999999999999887765 5777 788999999
Q ss_pred hhHHHHHHHHHHHHH
Q 040576 614 CIVYSMLGEIGAQMK 628 (641)
Q Consensus 614 ~~~~~~l~~l~~~~~ 628 (641)
++...++|....+
T Consensus 136 --~~~l~~~ll~~~G 148 (150)
T 4ga2_A 136 --VYKLKEQLLDCEG 148 (150)
T ss_dssp --HHHHHHHHHHTCC
T ss_pred --HHHHHHHHHHHhC
Confidence 9988888765443
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=1.8e-09 Score=102.24 Aligned_cols=236 Identities=10% Similarity=0.029 Sum_probs=160.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 040576 323 LALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVM 402 (641)
Q Consensus 323 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 402 (641)
|+-..-.|.+..++.-..++. .........-+.+++...|+++.. ..-.|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence 344556677777776333221 112222333344566666655421 111233323333333 33322
Q ss_pred HHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHh
Q 040576 403 DLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP-NDATFICVLSACTHAGMVLEGWWYFDLM 478 (641)
Q Consensus 403 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 478 (641)
|...|++..+ ++..++..+..++...|++++|++++.+....|..+ +...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777777663 455666788889999999999999999987765423 4557778889999999999999999999
Q ss_pred HHhhCCCC-----chHHHHHHHHH--Hhh--cCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 479 QRIYKIEP-----KVEHYGCMVDL--LGR--AGLMRDSEELVSKLP-MEAGPALWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 479 ~~~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
.+ ..| +..+...|+.+ ... .+++.+|..+|+++. ..|+...-..++.++...|++++|+..++.+.+
T Consensus 163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 87 456 34455555555 333 348999999999983 346534444555589999999999999998887
Q ss_pred c----------CCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 549 L----------EPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 549 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
. +|+++.++..++.+....|+ +|.++++++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 6 58899999888878788887 899999999
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=2.1e-10 Score=111.04 Aligned_cols=200 Identities=10% Similarity=-0.012 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHH
Q 040576 366 VIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE-----KN----VVSWNSMIMGYGMHGQGEKA 436 (641)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A 436 (641)
++++|...+... ...|...|++++|...|++..+ .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 3467778888888888876653 11 45788899999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHHhh-ccHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHHhhcCCHHH
Q 040576 437 LEMFMEMEKRGP---TPN--DATFICVLSACTHA-GMVLEGWWYFDLMQRIYKIEPK----VEHYGCMVDLLGRAGLMRD 506 (641)
Q Consensus 437 ~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 506 (641)
+..|++..+... .+. ..++..+...|... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999988776311 111 34778888899996 9999999999998872211111 3568889999999999999
Q ss_pred HHHHHHhC----CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hcCCh
Q 040576 507 SEELVSKL----PMEAGP-----ALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGP-----YVLLSNIYA--SEGKW 570 (641)
Q Consensus 507 A~~~~~~~----~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 570 (641)
|++.|++. +..+.. ..+..+..++...|++++|...++++++++|..... +..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999986 212221 256778888999999999999999999999986643 344566665 45789
Q ss_pred HHHHHHHHHh
Q 040576 571 DEVENLRRIM 580 (641)
Q Consensus 571 ~~A~~~~~~m 580 (641)
++|+..++++
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 9999988877
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=1.3e-09 Score=109.71 Aligned_cols=261 Identities=10% Similarity=-0.034 Sum_probs=162.3
Q ss_pred HHHHHHhcCChHHHHHHHHhcC----CCCc----chHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHH
Q 040576 291 MIDGYAKIGNVTSARNCFDRMC----MRNV----VSWNILLALYVRCKDYCECLRLFDRMIRGDA-KPNE----ASLMSV 357 (641)
Q Consensus 291 li~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~l 357 (641)
+...+...|++++|...+++.. ..+. ..++.+...+...|++++|...+++...... ..+. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344555666666666665541 1111 1345555667777777777777776654210 1111 224455
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C------ChhHHHH
Q 040576 358 LTACANMGVIDIGQWIHSYIQKC----RIK--P-DVLLSTSLLTMYAKCGVMDLARNVFDNMTE--K------NVVSWNS 422 (641)
Q Consensus 358 l~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~ 422 (641)
...+...|++++|...++...+. +.. | ....+..+...|...|++++|...+++... + ...+|..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 56677777887777777766542 221 2 234556677778888888888888876542 1 1245777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhhccHHHHHHHHHHhHHhhCCCC---chHHHHH
Q 040576 423 MIMGYGMHGQGEKALEMFMEMEKRGPTPN--DATFI----CVLSACTHAGMVLEGWWYFDLMQRIYKIEP---KVEHYGC 493 (641)
Q Consensus 423 li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~ 493 (641)
+...+...|++++|...+++.......++ ..... ..+..+...|++++|..+++.... ....+ ....+..
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK-PEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC-CCCTTCGGGHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC-CCCCcchhhHHHHHH
Confidence 78888888999999999888765321211 11111 223346688999999999888765 21111 1234567
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC----CCC---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040576 494 MVDLLGRAGLMRDSEELVSKLP----MEA---GP-ALWGALLSACSTHSNSELGKIVAQHLMELEPR 552 (641)
Q Consensus 494 li~~~~~~g~~~~A~~~~~~~~----~~~---~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 552 (641)
+...+...|++++|.+.+++.. ..+ +. ..+..+..++...|+.++|...+++++++.+.
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 7788889999999988888751 111 22 24555667788899999999999998876543
No 89
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.15 E-value=4.1e-10 Score=93.33 Aligned_cols=114 Identities=7% Similarity=0.044 Sum_probs=99.2
Q ss_pred CCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 040576 484 IEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PM-EAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLL 560 (641)
Q Consensus 484 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 560 (641)
+.|+ ...+......|.+.|++++|++.|++. .. +.+...|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4565 456777888899999999999999886 22 34577888899999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHH
Q 040576 561 SNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEI 623 (641)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l 623 (641)
+.+|...|++++|++.+++. .+++|++.+ +...|+++
T Consensus 88 g~~~~~~~~~~~A~~~~~~a------------------------l~l~P~~~~--a~~~l~~~ 124 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDA------------------------LQVDPSNEE--AREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------------------HHHCTTCHH--HHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH------------------------HHHCcCCHH--HHHHHHHh
Confidence 99999999999999999998 788999999 88888765
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=7.2e-10 Score=106.33 Aligned_cols=221 Identities=13% Similarity=0.140 Sum_probs=152.5
Q ss_pred HccCCHHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhHHHHH
Q 040576 362 ANMGVIDIGQWIHSYIQKC-------RIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE-----------KNVVSWNSM 423 (641)
Q Consensus 362 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 423 (641)
...|+++.|..+++...+. ..+....++..+...|...|++++|...|+++.+ ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766552 2233467788899999999999999999987652 123578888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhh-----CCCCc-hHH
Q 040576 424 IMGYGMHGQGEKALEMFMEMEKR-----GP-TPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIY-----KIEPK-VEH 490 (641)
Q Consensus 424 i~~~~~~~~~~~A~~~~~~m~~~-----g~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 490 (641)
...|...|++++|...|+++.+. +. .|+ ..++..+...+...|++++|..+++++.+.. +..|. ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 232 4577788889999999999999999988721 11333 567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCC
Q 040576 491 YGCMVDLLGRAGLMRDSEELVSKLP----------MEAG-PALWGALLSACSTHS------NSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~p~~ 553 (641)
+..+..+|.+.|++++|.+.++++. ..+. ...|..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999988761 1222 223333333333322 2333333333333334555
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 554 PGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
+..+..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66899999999999999999999998864
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=1.4e-09 Score=105.22 Aligned_cols=171 Identities=9% Similarity=-0.074 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCC-C----
Q 040576 387 LLSTSLLTMYAKCGVMDLARNVFDNMTE-----KN----VVSWNSMIMGYGMH-GQGEKALEMFMEMEKRGPTP-N---- 451 (641)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p-~---- 451 (641)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 3444555555555555555555554432 11 23567777788875 88888888888776531110 1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCch-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH----
Q 040576 452 DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV-----EHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPA---- 521 (641)
Q Consensus 452 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~---- 521 (641)
..++..+...+...|++++|+..|+++.+...-.+.. ..|..+..++...|++++|+..+++. ...|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 2457777888888888888888888887721111111 14666777888888888888888876 3334321
Q ss_pred --HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCchH
Q 040576 522 --LWGALLSACS--THSNSELGKIVAQHLMELEPRDPGPY 557 (641)
Q Consensus 522 --~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~ 557 (641)
.+..++.++. ..+++++|+..|+++.+++|.+...+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 2334455554 45668888888887777777654333
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=5.8e-09 Score=96.47 Aligned_cols=183 Identities=10% Similarity=-0.007 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 040576 387 LLSTSLLTMYAKCGVMDLARNVFDNMTE--KN----VVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPND--ATFICV 458 (641)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l 458 (641)
..+..+...+...|++++|...|+++.+ |+ ...+..++.+|.+.|++++|+..|+++.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444556667777888888888877663 32 235666777777888888888888877765322111 133344
Q ss_pred HHHHHh------------------hccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 040576 459 LSACTH------------------AGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKLPMEAG 519 (641)
Q Consensus 459 l~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 519 (641)
..++.. .|++++|...|+++.+ ..|+ ...+...... +......
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l----~~~~~~~----------- 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRL----VFLKDRL----------- 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHH----HHHHHHH-----------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHH----HHHHHHH-----------
Confidence 444443 3556666666666655 2232 1121111110 0000000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 040576 520 PALWGALLSACSTHSNSELGKIVAQHLMELEPRDP---GPYVLLSNIYASEGKWDEVENLRRIMKEKELEK 587 (641)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 587 (641)
......+...+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++++...++..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00113456678899999999999999999999986 579999999999999999999999997776553
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=1.3e-09 Score=118.55 Aligned_cols=144 Identities=10% Similarity=-0.128 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHH
Q 040576 418 VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVD 496 (641)
Q Consensus 418 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 496 (641)
..|..+..+|...|++++|+..|+++.+.... +...+..+..++...|++++|.+.|+++.+ +.|+ ...|..+..
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLALAA 509 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHH
Confidence 34444444555555555555555554443211 333444444445555555555555555444 2222 344444455
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 040576 497 LLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYAS 566 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 566 (641)
+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|+..|+++++++|++...+..++.+|..
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 5555555555 4444443 1112 233444455555555555555555555555555555555555555444
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=1.6e-09 Score=104.35 Aligned_cols=151 Identities=11% Similarity=-0.011 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHH-H
Q 040576 453 ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKLP-MEAGPALWGALLS-A 529 (641)
Q Consensus 453 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~-~ 529 (641)
..+..+...+...|++++|...|+++.+ ..| +...+..+..+|.+.|++++|++.++++. ..|+......... .
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 3444555556666666666666666655 223 24555566666666666666666666652 3344433222222 2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCC
Q 040576 530 CSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCP 609 (641)
Q Consensus 530 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 609 (641)
+...++.+.|...++++++.+|+++..+..++.+|...|++++|+..++++ .+.+|
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~------------------------l~~~p 250 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGH------------------------LRXDL 250 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHHCT
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH------------------------Hhccc
Confidence 445555566666666666666666666666666666666666666666666 45555
Q ss_pred CC--chhhHHHHHHHHHHHHHhhhc
Q 040576 610 PH--RKCIVYSMLGEIGAQMKMCRR 632 (641)
Q Consensus 610 ~~--~~~~~~~~l~~l~~~~~~~~~ 632 (641)
++ .. ++..|+.+...+++..+
T Consensus 251 ~~~~~~--a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 251 TAADGQ--TRXTFQEILAALGTGDA 273 (287)
T ss_dssp TGGGGH--HHHHHHHHHHHHCTTCH
T ss_pred ccccch--HHHHHHHHHHHcCCCCc
Confidence 55 45 66666666666555443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=4.7e-09 Score=87.70 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=73.7
Q ss_pred HHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC
Q 040576 457 CVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHS 534 (641)
Q Consensus 457 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g 534 (641)
.+...+...|++++|..+++.+.+ . .+.+...+..++..+...|++++|...++++ . ...+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALE-L-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH-c-CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 344444444555555555554443 1 1122334444455555555555555555544 1 1223445666666677777
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 535 NSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 535 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
++++|...++++.+..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777787888888888777777543
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=5.6e-09 Score=99.13 Aligned_cols=202 Identities=12% Similarity=0.019 Sum_probs=145.4
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhH
Q 040576 349 PNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPD---VLLSTSLLTMYAKCGVMDLARNVFDNMTE--KN----VVS 419 (641)
Q Consensus 349 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~ 419 (641)
.+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+ |+ ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 455677778888999999999999999999864 223 66788899999999999999999999874 32 346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHH
Q 040576 420 WNSMIMGYGM--------HGQGEKALEMFMEMEKRGPTPND-ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEH 490 (641)
Q Consensus 420 ~~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 490 (641)
+..+..++.. .|++++|+..|+++.+.. |+. .....+ ..+..+.. --...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~-----~~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRA-----KLARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHH-----HHHHH
Confidence 7788888988 999999999999999863 432 222111 11111111 00122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc
Q 040576 491 YGCMVDLLGRAGLMRDSEELVSKL-PMEAG----PALWGALLSACSTH----------SNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
+..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556778888999999999988876 22232 44667777777755 8999999999999999999864
Q ss_pred ---hHHHHHHHHHhcCChHH
Q 040576 556 ---PYVLLSNIYASEGKWDE 572 (641)
Q Consensus 556 ---~~~~l~~~~~~~g~~~~ 572 (641)
....+..++.+.|++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34445555555554443
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=2.3e-10 Score=98.34 Aligned_cols=142 Identities=9% Similarity=-0.019 Sum_probs=106.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhh
Q 040576 423 MIMGYGMHGQGEKALEMFMEMEKRGPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGR 500 (641)
Q Consensus 423 li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 500 (641)
|...+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+++.+ +.|+ ...|..+..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 344455567778888887776553 333 23555677788888888888888888877 3443 6778888888888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 040576 501 AGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKI-VAQHLMELEPRDPGPYVLLSNIYASEGK 569 (641)
Q Consensus 501 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 569 (641)
.|++++|+..|++. ...| +...|..+...+...|+.++|.. .++++++++|+++.+|.....++...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888888876 3334 46688888889999999876655 5699999999999999999999988885
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=1.5e-09 Score=118.03 Aligned_cols=166 Identities=9% Similarity=-0.102 Sum_probs=142.3
Q ss_pred HHcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHH
Q 040576 428 GMHGQGEKALEMFMEME--------KRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLL 498 (641)
Q Consensus 428 ~~~~~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 498 (641)
...|++++|++.+++.. +.. ..+...+..+..++...|++++|++.|+++.+ ..| +...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAE---RVGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCcchHHHHHHHHHHH
Confidence 67899999999999998 432 22456788889999999999999999999988 334 467888999999
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHH
Q 040576 499 GRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENL 576 (641)
Q Consensus 499 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (641)
...|++++|++.|++. ...| +...|..+..++...|++++ +..|+++++++|+++..|..++.+|.+.|++++|++.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999987 3334 46788899999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHH
Q 040576 577 RRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIG 624 (641)
Q Consensus 577 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~ 624 (641)
++++ .+++|++.. ++..++.+.
T Consensus 557 ~~~a------------------------l~l~P~~~~--a~~~~~~~~ 578 (681)
T 2pzi_A 557 LDEV------------------------PPTSRHFTT--ARLTSAVTL 578 (681)
T ss_dssp HHTS------------------------CTTSTTHHH--HHHHHHHHT
T ss_pred HHhh------------------------cccCcccHH--HHHHHHHHH
Confidence 9998 566677766 666666654
No 99
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.02 E-value=1.4e-09 Score=93.04 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=85.7
Q ss_pred CCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 040576 484 IEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLL 560 (641)
Q Consensus 484 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 560 (641)
+.|+ ...+..+...+.+.|++++|+..|++. . .+.+...|..+..++...|++++|+..|+++++++|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4454 566777888899999999999999987 2 234677888999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHh
Q 040576 561 SNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~m 580 (641)
+.+|...|++++|.+.+++.
T Consensus 96 g~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999998
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=7.4e-09 Score=99.17 Aligned_cols=197 Identities=9% Similarity=-0.013 Sum_probs=112.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C---
Q 040576 353 SLMSVLTACANMGVIDIGQWIHSYIQKC------RI-KPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE-------K--- 415 (641)
Q Consensus 353 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--- 415 (641)
++..+...+...|++++|...+..+.+. +- +....++..+..+|...|++++|...|++..+ +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444445555555555555444432 11 11234555566666666666666666655432 1
Q ss_pred -ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhh-----
Q 040576 416 -NVVSWNSMIMGYGMHGQGEKALEMFMEMEKR------GPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIY----- 482 (641)
Q Consensus 416 -~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----- 482 (641)
...+|..+...|...|++++|...|+++.+. +-.|+ ..++..+...+...|++++|..+++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2345677777788888888888888877664 11222 3467778888888999999999988887621
Q ss_pred -CCCCc-hHHHHHHHHHHhhc------CCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040576 483 -KIEPK-VEHYGCMVDLLGRA------GLMRDSEELVSKLP-MEAG-PALWGALLSACSTHSNSELGKIVAQHLMEL 549 (641)
Q Consensus 483 -~~~p~-~~~~~~li~~~~~~------g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 549 (641)
...+. ...+..+...+... ..+.++...++... ..|+ ...+..+...|...|++++|...++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 23333333333332 23555555566553 2233 346778888899999999999999998875
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=2.1e-08 Score=91.69 Aligned_cols=172 Identities=6% Similarity=-0.075 Sum_probs=139.1
Q ss_pred HHHHHhhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc----cHHHHHHHHHHhH
Q 040576 405 ARNVFDNMTE-KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAG----MVLEGWWYFDLMQ 479 (641)
Q Consensus 405 A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 479 (641)
|.+.|++..+ .++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444432 567788888888888999999999999998875 56777777777777 6 8999999999997
Q ss_pred HhhCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 040576 480 RIYKIEPKVEHYGCMVDLLGR----AGLMRDSEELVSKLP-MEAG---PALWGALLSACST----HSNSELGKIVAQHLM 547 (641)
Q Consensus 480 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 547 (641)
+ .+ +...+..|...|.. .+++++|+++|++.. ..+. +..+..|...|.. .++.++|...|+++.
T Consensus 81 ~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 7 33 46677788888877 889999999999874 3342 7788888888888 889999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhc-C-----ChHHHHHHHHHhhhCCC
Q 040576 548 ELEPRDPGPYVLLSNIYASE-G-----KWDEVENLRRIMKEKEL 585 (641)
Q Consensus 548 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 585 (641)
+. |+++..+..|+.+|... | ++++|.+++++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 77788999999999865 3 89999999999976653
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=3.8e-08 Score=93.22 Aligned_cols=237 Identities=9% Similarity=0.009 Sum_probs=159.3
Q ss_pred hcCChHHHHHHHHhcCCCCcc-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040576 297 KIGNVTSARNCFDRMCMRNVV-SWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHS 375 (641)
Q Consensus 297 ~~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 375 (641)
-.|.+..++.-...+...+.. .-.-+.++|...|+++.. ..-.|....+..+.. |...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HHHHHH
Confidence 356666666655554332222 223345778888877642 122344334433333 33322 566677
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 040576 376 YIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTE-----KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTP 450 (641)
Q Consensus 376 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 450 (641)
...+.+ .++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 666554 44555556788889999999999999988743 24567788889999999999999999999874 56
Q ss_pred -----CHHHHHHHHHH--HHhhc--cHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCC-----
Q 040576 451 -----NDATFICVLSA--CTHAG--MVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPM----- 516 (641)
Q Consensus 451 -----~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 516 (641)
+..+...+..+ ....| ++.+|..+|+++.. ..|+......+..++.+.|++++|.+.++.+..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 35566666666 33334 89999999999876 335433333444489999999999999876521
Q ss_pred ------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 040576 517 ------EAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 517 ------~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
.|+ +.+...++......|+ +|.++++++.+..|+++.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 244 4566567666666787 889999999999999973
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=8.1e-09 Score=99.43 Aligned_cols=176 Identities=10% Similarity=-0.027 Sum_probs=139.8
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHh
Q 040576 402 MDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRI 481 (641)
Q Consensus 402 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 481 (641)
.+.....+......+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 344455555555455667778888899999999999999999886322 566888888999999999999999998866
Q ss_pred hCCCCchHHHH-HHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--Cch
Q 040576 482 YKIEPKVEHYG-CMVDLLGRAGLMRDSEELVSKL-PM-EAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRD--PGP 556 (641)
Q Consensus 482 ~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 556 (641)
..|+..... .....+.+.++.++|++.+++. .. +.+...+..+...+...|++++|...++++++.+|++ ...
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 345543332 2333466778888888888876 22 3457788999999999999999999999999999998 889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 557 YVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999988764
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=2e-08 Score=83.75 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 040576 418 VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDL 497 (641)
Q Consensus 418 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 497 (641)
..|..++..+...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++.. . .+.+...+..++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-L-DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHH-H-CCCchHHHHHHHHH
Confidence 3567788888888999999999998887642 3566777888888889999999999999877 2 23346677888889
Q ss_pred HhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 498 LGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 498 ~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
+...|++++|.+.++++ . ...+...+..+...+...|++++|...++++++..|++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999999998876 2 23456778888888999999999999999999888763
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.97 E-value=7.8e-09 Score=110.31 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=85.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHH
Q 040576 431 GQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEE 509 (641)
Q Consensus 431 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 509 (641)
|++++|+..|++..+... -+...+..+...+...|++++|.+.+++..+ ..|+ ...+..+..+|...|++++|++
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 556666666666655421 1345566666666666666666666666655 2333 5556666666666666666666
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc---CChHHHHHHHHHhhhCC
Q 040576 510 LVSKL-PME-AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASE---GKWDEVENLRRIMKEKE 584 (641)
Q Consensus 510 ~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~ 584 (641)
.+++. ... .+...+..+..++...|++++|...++++++++|+++..+..++.+|... |++++|.+.+++..+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 66655 112 23556666666777777777777777777777777777777777777777 77777777777765544
Q ss_pred C
Q 040576 585 L 585 (641)
Q Consensus 585 ~ 585 (641)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.96 E-value=5.6e-09 Score=89.16 Aligned_cols=99 Identities=8% Similarity=-0.032 Sum_probs=88.2
Q ss_pred CCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 040576 484 IEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PME-AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLL 560 (641)
Q Consensus 484 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 560 (641)
+.|+ ...+..+...+.+.|++++|++.|++. ... .++..|..+..++...|++++|+..|+++++++|+++..|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 5555 567778888999999999999999987 233 4577899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhh
Q 040576 561 SNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
+.+|...|++++|+..+++..+
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999943
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=2.1e-08 Score=91.38 Aligned_cols=119 Identities=10% Similarity=0.018 Sum_probs=54.4
Q ss_pred HHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 040576 458 VLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHS 534 (641)
Q Consensus 458 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 534 (641)
+..++.+.|++++|+..|++..+ +.| +...+..+..+|...|++++|++.|++. ...| +...|..+...+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ---KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 44455555555555555555554 223 2445555555555555555555555554 1122 2344554544443332
Q ss_pred C--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 535 N--SELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 535 ~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
+ .+.+...++++....|.. ..+..++.++...|++++|+..+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~-~a~~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQ-YARYRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHH-HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2 223333343333221111 13344455555555666666666655
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=1.5e-08 Score=98.67 Aligned_cols=180 Identities=11% Similarity=0.037 Sum_probs=125.0
Q ss_pred HHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHH
Q 040576 394 TMYAKCGVMDLARNVFDNMTE-----KN----VVSWNSMIMGYGMHGQGEKALEMFMEMEKRG---PTPN--DATFICVL 459 (641)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~ll 459 (641)
..|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666665442 11 2467778888888899999999888876531 1122 34677788
Q ss_pred HHHHhhccHHHHHHHHHHhHHhhCCC---C-chHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHH
Q 040576 460 SACTHAGMVLEGWWYFDLMQRIYKIE---P-KVEHYGCMVDLLGRAGLMRDSEELVSKLP----MEAG----PALWGALL 527 (641)
Q Consensus 460 ~~~~~~g~~~~a~~~~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~ 527 (641)
..|.. |++++|+..|++......-. + ...++..+...|.+.|++++|++.|++.. ..++ ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 88888 99999999999887622111 1 14678888999999999999999998761 1122 22556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHHhcCChHHHHHH
Q 040576 528 SACSTHSNSELGKIVAQHLMELEPRDPGP-----YVLLSNIYASEGKWDEVENL 576 (641)
Q Consensus 528 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 576 (641)
.++...|++++|...+++++ +.|..... ...++.++ ..|+.+.+.++
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 77788899999999999999 98876543 34455555 56777666663
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=7e-09 Score=91.77 Aligned_cols=155 Identities=7% Similarity=-0.022 Sum_probs=89.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHH-Hhhc
Q 040576 423 MIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDL-LGRA 501 (641)
Q Consensus 423 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~ 501 (641)
+...+...|++++|+..|++..+... -+...+..+...+...|++++|...++.+.. ..|+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHHhh
Confidence 33444445555555555554443211 1233444444455555555555555554433 11222111111111 1111
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCChHHHHHHH
Q 040576 502 GLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRD--PGPYVLLSNIYASEGKWDEVENLR 577 (641)
Q Consensus 502 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 577 (641)
+...+|++.+++. ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1222345555554 2234 46778888888899999999999999999998875 558889999999999999999988
Q ss_pred HHhh
Q 040576 578 RIMK 581 (641)
Q Consensus 578 ~~m~ 581 (641)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=5.1e-09 Score=92.66 Aligned_cols=151 Identities=10% Similarity=0.004 Sum_probs=118.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHH-HH
Q 040576 455 FICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKLP-MEAGPALWGALLSA-CS 531 (641)
Q Consensus 455 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~-~~ 531 (641)
+......+...|++++|...|+++.+ ..|+ ...+..+..+|.+.|++++|+..+++.. ..|++..+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD---ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH---HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 44566778899999999999999876 3344 6788899999999999999999999983 34544433322222 22
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCC
Q 040576 532 THSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPH 611 (641)
Q Consensus 532 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 611 (641)
..++...|+..++++++.+|+++..+..++.+|...|++++|...++++ .+.+|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~------------------------l~~~p~~ 141 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNI------------------------LKVNLGA 141 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HTTCTTT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH------------------------HHhCccc
Confidence 2233345789999999999999999999999999999999999999998 5556654
Q ss_pred --chhhHHHHHHHHHHHHHhhhccc
Q 040576 612 --RKCIVYSMLGEIGAQMKMCRRDV 634 (641)
Q Consensus 612 --~~~~~~~~l~~l~~~~~~~~~~~ 634 (641)
.. .+..|+.+...+++..+++
T Consensus 142 ~~~~--a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 142 QDGE--VKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp TTTH--HHHHHHHHHHHHCSSCHHH
T ss_pred ChHH--HHHHHHHHHHHhCCCCcHH
Confidence 56 8889999998888776554
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=2e-08 Score=91.56 Aligned_cols=128 Identities=11% Similarity=0.056 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHh
Q 040576 421 NSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLG 499 (641)
Q Consensus 421 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 499 (641)
+.+..+|.+.|++++|+..|++..+.... +...+..+...+...|++++|...|+++.+ +.|+ ...+..+..+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 34888999999999999999999986422 567888899999999999999999999988 4454 678888888887
Q ss_pred hcCC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 500 RAGL--MRDSEELVSKLPMEAGPA--LWGALLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 500 ~~g~--~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
..|+ .+.+...++... .|++. .+..+..++...|++++|+..|++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 455667777764 34443 44455666778899999999999999999974
No 112
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.89 E-value=1.6e-08 Score=85.72 Aligned_cols=97 Identities=11% Similarity=-0.013 Sum_probs=84.4
Q ss_pred CCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 040576 484 IEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PME-AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLL 560 (641)
Q Consensus 484 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 560 (641)
+.|+ ...+..+...+.+.|++++|++.|++. ... .+...|..+..++...|++++|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3443 455667788888999999999999886 223 4577888899999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHh
Q 040576 561 SNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~m 580 (641)
+.+|...|++++|.+.+++.
T Consensus 93 g~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999998
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=2.7e-08 Score=96.86 Aligned_cols=196 Identities=10% Similarity=-0.011 Sum_probs=147.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 040576 364 MGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEM 443 (641)
Q Consensus 364 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 443 (641)
.|++++|.++++...+..- .. .+...+++++|...|.+. +..|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 4566777777776665321 11 011157888888887653 66788999999999999987
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCC--CCc--hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 444 EKR----GPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKI--EPK--VEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 444 ~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
.+. |-.+. ..+|..+...|...|++++|+..|++......- .+. ..++..+..+|.. |++++|++.|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 663 21111 347888888999999999999999998763211 111 4677888999988 9999999999876
Q ss_pred ----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 515 ----PMEAG----PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG------PYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 515 ----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
+...+ ..++..+...+...|++++|+..+++++++.|.+.. .+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 356778888999999999999999999998765542 6777888899999999999999998
Q ss_pred h
Q 040576 581 K 581 (641)
Q Consensus 581 ~ 581 (641)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 5
No 114
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.5e-08 Score=83.86 Aligned_cols=113 Identities=6% Similarity=-0.046 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
...+..+...+.+.|++++|++.|++. . .+.+...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 455677778888899999999988876 2 23457788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccC------CCCchhhHHHHHHHHHHH
Q 040576 566 SEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENC------PPHRKCIVYSMLGEIGAQ 626 (641)
Q Consensus 566 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~~~~~~~~~l~~l~~~ 626 (641)
..|++++|.+.+++. .+++ |++.. +...|..+..+
T Consensus 84 ~~~~~~~A~~~~~~a------------------------l~~~p~~~~~p~~~~--~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAA------------------------RTKDAEVNNGSSARE--IDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHH------------------------HHHHHHHHTTTTHHH--HHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH------------------------HHhCcccCCchhHHH--HHHHHHHHHHh
Confidence 999999999999998 4555 88888 88888776554
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=5.9e-08 Score=103.51 Aligned_cols=159 Identities=9% Similarity=-0.022 Sum_probs=120.2
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 040576 399 CGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYF 475 (641)
Q Consensus 399 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 475 (641)
.|++++|.+.|++..+ .+...|..+...|...|++++|...|++..+... .+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3677888888887764 3567888889999999999999999999888642 25678888888999999999999999
Q ss_pred HHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 040576 476 DLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PME-AGPALWGALLSACSTH---SNSELGKIVAQHLMEL 549 (641)
Q Consensus 476 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 549 (641)
++..+ ..| +...+..+..+|.+.|++++|++.+++. ... .+...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99987 234 4678888999999999999999999886 223 3467888888999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 040576 550 EPRDPGPYVLLS 561 (641)
Q Consensus 550 ~p~~~~~~~~l~ 561 (641)
+|.+...|..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887766
No 116
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.82 E-value=1.8e-08 Score=89.16 Aligned_cols=116 Identities=9% Similarity=0.052 Sum_probs=88.2
Q ss_pred HhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH-HHhcCCH--H
Q 040576 463 THAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PM-EAGPALWGALLSA-CSTHSNS--E 537 (641)
Q Consensus 463 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~-~~~~g~~--~ 537 (641)
...|++++|...++...+. .+.+...+..+..+|...|++++|++.|++. .. ..+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4457777788888777662 2234667777888888888888888888776 11 2356677777777 7788888 9
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 538 LGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 538 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
+|...++++++.+|+++..+..++.+|...|++++|...++++
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.82 E-value=7.9e-08 Score=87.79 Aligned_cols=127 Identities=7% Similarity=-0.136 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHh
Q 040576 420 WNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLG 499 (641)
Q Consensus 420 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 499 (641)
+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...|++.... .+.+...+..+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 4445555666666666666665552 445555666666666666666666666666551 1223444555555555
Q ss_pred hcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040576 500 RAGLMRDSEELVSKL-PMEA-G----------------PALWGALLSACSTHSNSELGKIVAQHLMELEPR 552 (641)
Q Consensus 500 ~~g~~~~A~~~~~~~-~~~~-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 552 (641)
..|++++|++.|++. ...| + ...+..+..++...|++++|...+++++++.|+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 555555555555544 1111 1 134444555555555555555555555555443
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.81 E-value=3.8e-07 Score=87.40 Aligned_cols=147 Identities=13% Similarity=0.134 Sum_probs=70.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHH--HHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCC-----
Q 040576 431 GQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVL--EGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGL----- 503 (641)
Q Consensus 431 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----- 503 (641)
+++++++.+++++.+...+ |...+..-...+.+.|.++ +++++++++.+ . -.-|...|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~-~-d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVID-T-DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHhccccchhh
Confidence 4455555555555544322 3444444444444444444 55555555544 1 11223344433333333333
Q ss_pred -HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCChHHHHHH
Q 040576 504 -MRDSEELVSKL--PMEAGPALWGALLSACSTHSNS-ELGKIVAQHLMELE---PRDPGPYVLLSNIYASEGKWDEVENL 576 (641)
Q Consensus 504 -~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (641)
++++++.++++ ...-|...|+-+...+...|+. +....+.+++.+++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55555555443 1123344555555555555442 22334455544444 55555666666666666666666666
Q ss_pred HHHh
Q 040576 577 RRIM 580 (641)
Q Consensus 577 ~~~m 580 (641)
++.+
T Consensus 281 ~~~l 284 (306)
T 3dra_A 281 YDLL 284 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=1.5e-07 Score=86.92 Aligned_cols=178 Identities=12% Similarity=0.037 Sum_probs=122.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCch-HHHHH
Q 040576 417 VVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPT-PN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV-EHYGC 493 (641)
Q Consensus 417 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~ 493 (641)
...+..+...+...|++++|+..|+++.+.... |. ...+..+..++.+.|++++|+..|+++.+...-.+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445666777888889999999999998875322 11 3467778888888999999999999988733222221 24444
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH----------------
Q 040576 494 MVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPY---------------- 557 (641)
Q Consensus 494 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~---------------- 557 (641)
+..++.+.|.. .++ .+..+...+...|+.++|...|+++++..|+++..+
T Consensus 84 ~g~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ---------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hhh---------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 55555544321 111 122233345567889999999999999999988665
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCc---hhhHHHHHHHHHHHHHhhhcc
Q 040576 558 -VLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHR---KCIVYSMLGEIGAQMKMCRRD 633 (641)
Q Consensus 558 -~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~l~~l~~~~~~~~~~ 633 (641)
..++..|.+.|++++|+..++++ .+..|++. + .+..++.+..++++..++
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~------------------------l~~~p~~~~~~~--a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGM------------------------LRDYPDTQATRD--ALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH------------------------HHHSTTSHHHHH--HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHH------------------------HHHCcCCCccHH--HHHHHHHHHHHcCCcHHH
Confidence 46788899999999999999999 56667765 5 688888888888777665
Q ss_pred c
Q 040576 634 V 634 (641)
Q Consensus 634 ~ 634 (641)
.
T Consensus 204 ~ 204 (225)
T 2yhc_A 204 E 204 (225)
T ss_dssp H
T ss_pred H
Confidence 4
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.81 E-value=4e-08 Score=81.16 Aligned_cols=113 Identities=6% Similarity=-0.049 Sum_probs=92.9
Q ss_pred CCCCH-HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHH
Q 040576 448 PTPND-ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PM-EAGPALW 523 (641)
Q Consensus 448 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~ 523 (641)
+.|+. ..+......+.+.|++++|++.|+++.+ +.| +...|..+..+|.+.|++++|++.+++. .. +.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44543 3667778888889999999999998887 334 4778888889999999999999998886 22 3447789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 040576 524 GALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNI 563 (641)
Q Consensus 524 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 563 (641)
..+..++...|++++|+..|+++++++|+++.++..|+.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999888887765
No 121
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.81 E-value=4.7e-08 Score=81.43 Aligned_cols=115 Identities=6% Similarity=-0.038 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
...+..+...+.+.|++++|++.+++. ...| +...+..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 555666777777777777777777765 2233 45667777777777778888888888887777777777777888888
Q ss_pred hcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHH
Q 040576 566 SEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMK 628 (641)
Q Consensus 566 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~ 628 (641)
..|++++|.+.+++. .+.+|++.. .+..++.+...++
T Consensus 96 ~~~~~~~A~~~~~~~------------------------~~~~p~~~~--~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKA------------------------LDLDSSCKE--AADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHH------------------------HHHCGGGTH--HHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHH------------------------HHhCCCchH--HHHHHHHHHHHhc
Confidence 888888888887777 555666667 7777776665543
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.79 E-value=7.8e-08 Score=78.90 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 040576 489 EHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYAS 566 (641)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 566 (641)
..+..+...+.+.|++++|++.++++ . ...+...+..+...+...|++++|...++++.+..|+++..+..++.+|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34445555555555555555555554 1 122344555566666666666666666666666666666666666666666
Q ss_pred cCChHHHHHHHHHh
Q 040576 567 EGKWDEVENLRRIM 580 (641)
Q Consensus 567 ~g~~~~A~~~~~~m 580 (641)
.|++++|...++++
T Consensus 90 ~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 90 QGDYDEAIEYYQKA 103 (125)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHH
Confidence 66666666666666
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.78 E-value=4.4e-06 Score=86.52 Aligned_cols=346 Identities=10% Similarity=0.003 Sum_probs=203.4
Q ss_pred CCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-HHHHHHHHhc-----C-CCCCeeHHHHHHHHHH----hCCCh
Q 040576 171 RSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGE-VLDARKVFED-----G-PVWDLVTWNSMIDGYV----KNREV 239 (641)
Q Consensus 171 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~-----~-~~~~~~~~~~li~~~~----~~g~~ 239 (641)
++++.+..+|++.... .|+...|...+....+.++ .+....+|+. + ...+...|...+.-+. ..|+.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999988874 4688888888887777663 3445556654 1 2345567777776543 24567
Q ss_pred HHHHHHHhhCCCCCchhHHHHHHHHh---cCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCC---
Q 040576 240 GFARELFDFMPERDIFTWNSMISGYV---DVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCM--- 313 (641)
Q Consensus 240 ~~A~~~~~~m~~~~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--- 313 (641)
+.+..+|++.+.-....+..+-..|. +......+..+.... .+.+..|..+++.+..
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~-----------------~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT-----------------LPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH-----------------hHHHHHHHHHHHHHHHHHh
Confidence 77888888873211111222222221 111122222222111 0122233333333211
Q ss_pred -CCcchHHHHHHHHHHcC--C-----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 040576 314 -RNVVSWNILLALYVRCK--D-----YCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPD 385 (641)
Q Consensus 314 -~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 385 (641)
.+...|...+.--...+ - .+.+..+|+++... .+.+...|...+..+...|+.+.|..+++..... +.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 12334544443322211 0 34466788887774 3445667777777777888899999999888887 444
Q ss_pred hhHHHHHHHHHHhcCCHHHH-HHHHhhcC------------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 040576 386 VLLSTSLLTMYAKCGVMDLA-RNVFDNMT------------EKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPND 452 (641)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 452 (641)
...+.. |+...+.++. ..+.+... ......|...+..+.+.++.+.|..+|++. .. ...+.
T Consensus 246 ~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~ 319 (493)
T 2uy1_A 246 MFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGP 319 (493)
T ss_dssp SHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCH
T ss_pred HHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCCh
Confidence 433332 2221111111 11222111 011245667777777788899999999998 32 22344
Q ss_pred HHHHHHHHHHHh-hccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040576 453 ATFICVLSACTH-AGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACS 531 (641)
Q Consensus 453 ~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 531 (641)
..|......-.. .++.+.|..+|+...+..+ -+...+...++.....|+.+.|..+|+++. .....|...+.--.
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 455432222222 3369999999999988432 234556677888889999999999999984 35778888888878
Q ss_pred hcCCHHHHHHHHHHHHh
Q 040576 532 THSNSELGKIVAQHLME 548 (641)
Q Consensus 532 ~~g~~~~a~~~~~~~~~ 548 (641)
..|+.+.+..++++..+
T Consensus 396 ~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 396 MVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88999999998888875
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=1e-07 Score=78.96 Aligned_cols=116 Identities=13% Similarity=0.024 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
...+..+...+...|++++|++.+++. . ...+...+..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 344555555666666666666666654 1 12245556666666666666777777777666666666666666677777
Q ss_pred hcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHh
Q 040576 566 SEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKM 629 (641)
Q Consensus 566 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~ 629 (641)
..|++++|.+.+++. .+..|++.. .+..++.+...+++
T Consensus 92 ~~~~~~~A~~~~~~~------------------------~~~~p~~~~--~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKA------------------------LELDPDNET--YKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHH------------------------HHHSTTCHH--HHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHH------------------------HhcCccchH--HHHHHHHHHHHHhc
Confidence 777777777776666 455566666 66666666655544
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=6.2e-07 Score=86.53 Aligned_cols=161 Identities=8% Similarity=-0.043 Sum_probs=119.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc----hHHHH
Q 040576 422 SMIMGYGMHGQGEKALEMFMEMEKRGP-TPNDA----TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK----VEHYG 492 (641)
Q Consensus 422 ~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 492 (641)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..|+++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999998877421 22211 2334566667778999999999998872122222 33688
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchH
Q 040576 493 CMVDLLGRAGLMRDSEELVSKLP-----MEAG----PALWGALLSACSTHSNSELGKIVAQHLMELEPRD------PGPY 557 (641)
Q Consensus 493 ~li~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 557 (641)
.+..+|...|++++|++.|+++- ...+ ..++..+...|...|++++|...+++++++.+.. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998888762 1112 2367788889999999999999999998865433 4579
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHhhh
Q 040576 558 VLLSNIYASEGK-WDEVENLRRIMKE 582 (641)
Q Consensus 558 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 582 (641)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988753
No 126
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.76 E-value=1.3e-07 Score=76.63 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
...+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455666777778888888888888776 2 22356677788888888899999999999999988888888889999999
Q ss_pred hcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHH
Q 040576 566 SEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIG 624 (641)
Q Consensus 566 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~ 624 (641)
..|++++|.+.+++. .+.+|++.. .+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~------------------------~~~~~~~~~--~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEG------------------------LKHEANNPQ--LKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHH------------------------HTTCTTCHH--HHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH------------------------HHcCCCCHH--HHHHHHHhh
Confidence 999999999999888 566777777 777776654
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=2.1e-07 Score=89.81 Aligned_cols=163 Identities=7% Similarity=-0.057 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCC--Cc--hH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPND-----ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIE--PK--VE 489 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p~--~~ 489 (641)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++......-. +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677788899999999999888775322111 123345556677889999999999887521111 11 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----C
Q 040576 490 HYGCMVDLLGRAGLMRDSEELVSKLP----MEAG-----PALWGALLSACSTHSNSELGKIVAQHLMELEPR--D----P 554 (641)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~----~ 554 (641)
+|+.+...|...|++++|++.++++. ..|+ ..++..+...|...|++++|...+++++++.++ + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999999988751 1122 147788888999999999999999999876532 1 4
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHhh
Q 040576 555 GPYVLLSNIYASEGKWDEV-ENLRRIMK 581 (641)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 581 (641)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788999999999999999 77788764
No 128
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.75 E-value=8.3e-08 Score=80.55 Aligned_cols=119 Identities=8% Similarity=-0.044 Sum_probs=96.3
Q ss_pred CchHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 040576 486 PKVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNI 563 (641)
Q Consensus 486 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 563 (641)
.+...+..+...+...|++++|+..|++. . .+.+...|..+..++...|++++|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34667777888888888888888888876 2 223467888888999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCC-----CchhhHHHHHHHHHHHHHhh
Q 040576 564 YASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPP-----HRKCIVYSMLGEIGAQMKMC 630 (641)
Q Consensus 564 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~~~~~~l~~l~~~~~~~ 630 (641)
|...|++++|...+++..+ +.|+ +.. +...+..+..+..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~------------------------~~p~~~~~~~~~--~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS------------------------LAKEQRLNFGDD--IPSALRIAKKKRWNS 132 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH------------------------HHHHTTCCCTTH--HHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH------------------------HChhHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 9999999999999999843 3344 566 777777776665443
No 129
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.74 E-value=1.7e-08 Score=91.26 Aligned_cols=120 Identities=7% Similarity=-0.073 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040576 489 EHYGCMVDLLGRAGLMRDSEELVSKL----PMEAG--------------PALWGALLSACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
..+..+...+.+.|++++|++.|++. +..|+ ...|..+..++...|++++|+..++++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555566666667777776666654 11111 2567778888889999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhh
Q 040576 551 PRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMC 630 (641)
Q Consensus 551 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~ 630 (641)
|+++..+..++.+|...|++++|.+.+++. .+++|++.. ++..++.+...+++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------------------l~~~p~~~~--~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKA------------------------ASLNPNNLD--IRNSYELCVNKLKEA 172 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------------HHHSTTCHH--HHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHH------------------------HHHCCCcHH--HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 677888888 899999988888777
Q ss_pred hccc
Q 040576 631 RRDV 634 (641)
Q Consensus 631 ~~~~ 634 (641)
.+..
T Consensus 173 ~~~~ 176 (198)
T 2fbn_A 173 RKKD 176 (198)
T ss_dssp HC--
T ss_pred HHHH
Confidence 6654
No 130
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.74 E-value=5.3e-08 Score=84.63 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeee
Q 040576 520 PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEF 599 (641)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 599 (641)
...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|...+++.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a------------------- 123 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL------------------- 123 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH-------------------
Confidence 4578888889999999999999999999999999999999999999999999999999998
Q ss_pred ecccccccCCCCc-hhhHHHHHHHHHHHHHhhhccc
Q 040576 600 ASESIVENCPPHR-KCIVYSMLGEIGAQMKMCRRDV 634 (641)
Q Consensus 600 ~~~~~~~~~p~~~-~~~~~~~l~~l~~~~~~~~~~~ 634 (641)
.+++|++. . +...|+.+...+++..+..
T Consensus 124 -----l~l~p~~~~~--~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 124 -----LRNHPAAASV--VAREMKIVTERRAEKKADS 152 (162)
T ss_dssp -----HHHCGGGHHH--HHHHHHHHHHHHHHHTTSS
T ss_pred -----HhcCCCCHHH--HHHHHHHHHHHHHHHHHHH
Confidence 78889998 6 8889999888887765543
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.73 E-value=4.3e-06 Score=80.05 Aligned_cols=226 Identities=9% Similarity=-0.025 Sum_probs=166.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---C
Q 040576 331 DYCECLRLFDRMIRGDAKPNEA-SLMSVLTACANMG--VIDIGQWIHSYIQKCRIKPDVLLSTSLLTMY----AKC---G 400 (641)
Q Consensus 331 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g 400 (641)
..++|++++++++. +.|+.. .|+.--..+...| +++++...++.+...+ +-+..+|+.-..++ ... +
T Consensus 48 ~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 34578888877776 345443 4555556666666 7888888888877765 33444555443444 444 7
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc------HH
Q 040576 401 VMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGE--KALEMFMEMEKRGPTPNDATFICVLSACTHAGM------VL 469 (641)
Q Consensus 401 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~ 469 (641)
++++++.+++.+.+ +|..+|+.-.-.+...|+++ ++++.++++.+..+. |...++.-...+.+.|. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 88899999988874 56778888877888888888 999999999997655 67777766666666666 89
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040576 470 EGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRD-SEELVSKLP-M----EAGPALWGALLSACSTHSNSELGKIVA 543 (641)
Q Consensus 470 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~-~----~~~~~~~~~l~~~~~~~g~~~~a~~~~ 543 (641)
++++.++.+.. --+-|...|+.+...+.+.|+..+ +.++.+++. . ..+...+..+...+.+.|+.++|..++
T Consensus 204 eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999987 133457788888888888887544 555666652 1 346778889999999999999999999
Q ss_pred HHHHh-cCCCCCchHHHHHH
Q 040576 544 QHLME-LEPRDPGPYVLLSN 562 (641)
Q Consensus 544 ~~~~~-~~p~~~~~~~~l~~ 562 (641)
+.+.+ .+|.....|...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99997 79998877776654
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=1.2e-07 Score=82.58 Aligned_cols=93 Identities=10% Similarity=0.034 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-PME-AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
...+..+...+.+.|++++|++.|++. ... .+...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344445555555555555555555554 111 234455555556666666666666666666666666666666666666
Q ss_pred hcCChHHHHHHHHHh
Q 040576 566 SEGKWDEVENLRRIM 580 (641)
Q Consensus 566 ~~g~~~~A~~~~~~m 580 (641)
..|++++|++.+++.
T Consensus 91 ~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 91 DMADYKGAKEAYEKG 105 (164)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHH
Confidence 666666666666665
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=1.2e-06 Score=79.91 Aligned_cols=170 Identities=8% Similarity=-0.027 Sum_probs=113.4
Q ss_pred HHHHHHhc-CCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHH
Q 040576 304 ARNCFDRM-CMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMG----VIDIGQWIHSYIQ 378 (641)
Q Consensus 304 A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 378 (641)
|.+.|++. ...++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|...|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 44445444 23456667777777777788888888888877754 44556666666666 5 7778888877777
Q ss_pred HcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCCCC-----hhHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 040576 379 KCRIKPDVLLSTSLLTMYAK----CGVMDLARNVFDNMTEKN-----VVSWNSMIMGYGM----HGQGEKALEMFMEMEK 445 (641)
Q Consensus 379 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~A~~~~~~m~~ 445 (641)
+.| +...+..|..+|.. .+++++|.+.|++..+.+ +.++..|...|.. .+++++|+.+|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 654 45566666667765 677788888877777532 4677777777777 6777888888877776
Q ss_pred CCCCCCHHHHHHHHHHHHhh-c-----cHHHHHHHHHHhHHhhC
Q 040576 446 RGPTPNDATFICVLSACTHA-G-----MVLEGWWYFDLMQRIYK 483 (641)
Q Consensus 446 ~g~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~~ 483 (641)
. ..+...+..|...|... | +.++|..+|+...+ .|
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~-~g 198 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL-EG 198 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH-HT
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH-cC
Confidence 5 12334555566665543 2 67777777777776 44
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=2.3e-08 Score=95.84 Aligned_cols=192 Identities=11% Similarity=-0.042 Sum_probs=121.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040576 385 DVLLSTSLLTMYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSA 461 (641)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 461 (641)
+...+..+...+...|++++|...|++..+ .+...|..+..+|...|++++|+..+++..+... -+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 344555666677777777777777776652 3566777778888888888888888888776532 245677777778
Q ss_pred HHhhccHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040576 462 CTHAGMVLEGWWYFDLMQRIYKIEPKV-EHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGK 540 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 540 (641)
+...|++++|...|+++.+. .|+. ..+...+....+.++...... ........+......+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 88888888888888877662 2221 011111111111111111111 2222222333333333 333 268899999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhc-CChHHHHHHHHHhhhC
Q 040576 541 IVAQHLMELEPRDPGPYVLLSNIYASE-GKWDEVENLRRIMKEK 583 (641)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 583 (641)
..++++++++|++......+...+.+. +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777776 7789999999988764
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.72 E-value=1.8e-07 Score=87.45 Aligned_cols=179 Identities=9% Similarity=-0.093 Sum_probs=109.1
Q ss_pred hcCCHHHHHHHHhhcCC---CChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCC----------------
Q 040576 398 KCGVMDLARNVFDNMTE---KNVVSWNSM-------IMGYGMHGQGEKALEMFMEMEKRGPTPN---------------- 451 (641)
Q Consensus 398 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~~g~~p~---------------- 451 (641)
..++...|.+.|.++.. .....|..+ ...+...++..+++..+.+-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 35666666666666653 233456655 3445555555555555554433 1221
Q ss_pred ------HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 040576 452 ------DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGP----A 521 (641)
Q Consensus 452 ------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~ 521 (641)
......+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|++....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 11223345566677777777777777654 2344335555566777778888888877766433332 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 522 LWGALLSACSTHSNSELGKIVAQHLMELE--PR-DPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666677777888888888888776432 33 33466777777888888888888888773
No 136
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.71 E-value=1.5e-08 Score=85.45 Aligned_cols=85 Identities=8% Similarity=-0.095 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhcCChHHHHHHHHHhhhCCCcccCc
Q 040576 522 LWGALLSACSTHSNSELGKIVAQHLMEL-------EPRDPGPY----VLLSNIYASEGKWDEVENLRRIMKEKELEKAVG 590 (641)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 590 (641)
.|..+..++...|++++|+..+++++++ +|+++..| +..+.++...|++++|+..+++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA---------- 128 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV---------- 128 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH----------
Confidence 7888888899999999999999999999 99999999 99999999999999999999999
Q ss_pred eEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhc
Q 040576 591 SSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRR 632 (641)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~ 632 (641)
.++.|++.. ++..+..+.+..++..+
T Consensus 129 --------------lel~p~d~~--~~~~~~~~~~~~~~~~~ 154 (159)
T 2hr2_A 129 --------------VEMIEERKG--ETPGKERMMEVAIDRIA 154 (159)
T ss_dssp --------------HHHHHHCCS--CCTTHHHHHHHHHHHHH
T ss_pred --------------HhcCCCcHH--HHHHHHHHHHHHHHHHH
Confidence 778888888 88888887776655443
No 137
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=2.2e-07 Score=78.99 Aligned_cols=112 Identities=14% Similarity=0.056 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 040576 487 KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG----PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLS 561 (641)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 561 (641)
+...+..+...+...|++++|++.|++. ...|+ ...|..+..++...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3566777777888888888888888876 44566 467777888888899999999999999999998888899999
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHH
Q 040576 562 NIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIG 624 (641)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~ 624 (641)
.+|...|++++|.+.+++. .+.+|++.. +...+.++.
T Consensus 107 ~~~~~~~~~~~A~~~~~~a------------------------l~~~p~~~~--~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRC------------------------VSLEPKNKV--FQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHH------------------------HHHCSSCHH--HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH------------------------HHcCCCcHH--HHHHHHHHH
Confidence 9999999999999999988 667788888 777666653
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.70 E-value=7.3e-07 Score=81.25 Aligned_cols=131 Identities=9% Similarity=-0.050 Sum_probs=108.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccH
Q 040576 389 STSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMV 468 (641)
Q Consensus 389 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 468 (641)
+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44567788899999999999999988888999999999999999999999999998864 23567888899999999999
Q ss_pred HHHHHHHHHhHHhhC-------------CCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 040576 469 LEGWWYFDLMQRIYK-------------IEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGP 520 (641)
Q Consensus 469 ~~a~~~~~~~~~~~~-------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~ 520 (641)
++|.+.|+++.+... ..| ....+..+..+|.+.|++++|.+.|++. ...|+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999987221 111 1367888999999999999999999987 445554
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.70 E-value=2.4e-07 Score=80.52 Aligned_cols=126 Identities=5% Similarity=-0.077 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACS 531 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~ 531 (641)
.+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|++.+++. . ...+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666667777777777777777661 2224666777777788888888888877765 2 2234667888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCChHHHHHHHHHhh
Q 040576 532 THSNSELGKIVAQHLMELEPRDPGPYVLLSNI--YASEGKWDEVENLRRIMK 581 (641)
Q Consensus 532 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~ 581 (641)
..|++++|...++++++..|.++..+..+..+ +.+.|++++|++.+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999999988877554444 888899999999988764
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=9.3e-08 Score=94.21 Aligned_cols=146 Identities=11% Similarity=-0.047 Sum_probs=107.3
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc----------------hHHHHH
Q 040576 431 GQGEKALEMFMEMEKRGPTP-NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK----------------VEHYGC 493 (641)
Q Consensus 431 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~ 493 (641)
+++++|...|+...+. .| +...+..+...+.+.|++++|+..|+++.. +.|+ ...|..
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS---WLEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HhhccccCChHHHHHHHHHHHHHHHH
Confidence 3444555555443332 23 345777788888889999999999998887 2233 367778
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChH
Q 040576 494 MVDLLGRAGLMRDSEELVSKL-PM-EAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWD 571 (641)
Q Consensus 494 li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 571 (641)
+..+|.+.|++++|++.+++. .. +.+...|..+..++...|++++|+..|+++++++|+++..+..++.++.+.|+++
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888876 22 2356677788888888888888888888888888888888888888888888888
Q ss_pred HH-HHHHHHhh
Q 040576 572 EV-ENLRRIMK 581 (641)
Q Consensus 572 ~A-~~~~~~m~ 581 (641)
+| ...+++|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87 45666663
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=1.8e-07 Score=92.08 Aligned_cols=145 Identities=8% Similarity=-0.040 Sum_probs=114.7
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHH
Q 040576 401 VMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN--------------DATFICVLSACT 463 (641)
Q Consensus 401 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~ 463 (641)
++++|...|+...+ .+...|..+...|.+.|++++|+..|++..+...... ...|..+..++.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 2456888999999999999999999999998643321 478889999999
Q ss_pred hhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-
Q 040576 464 HAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELG- 539 (641)
Q Consensus 464 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a- 539 (641)
+.|++++|+..++++.+ +.| +...|..+..+|...|++++|++.|+++ ...| +...+..+..++...|+.++|
T Consensus 208 ~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALE---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 334 5788999999999999999999999987 2334 466888888899999999988
Q ss_pred HHHHHHHHh
Q 040576 540 KIVAQHLME 548 (641)
Q Consensus 540 ~~~~~~~~~ 548 (641)
...+++++.
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456666654
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=3.5e-07 Score=75.98 Aligned_cols=115 Identities=7% Similarity=-0.075 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHH
Q 040576 452 DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLS 528 (641)
Q Consensus 452 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~ 528 (641)
...+..+...+...|++++|...|+++.+ ..| +...+..+..+|...|++++|++.+++. . ...+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34566666667777777777777777665 223 4566667777777777777777777765 1 2235667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 040576 529 ACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGK 569 (641)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 569 (641)
++...|++++|...++++++..|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999887764
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=5.2e-07 Score=73.80 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 040576 452 DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSA 529 (641)
Q Consensus 452 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~ 529 (641)
...+..+...+...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|+..++++ . ...+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666667777777777887777777662 2234566777777888888888888887776 1 23456678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 040576 530 CSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEG 568 (641)
Q Consensus 530 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 568 (641)
+...|++++|...++++++..|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999888888888877654
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=3.7e-07 Score=75.49 Aligned_cols=117 Identities=8% Similarity=-0.051 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 040576 452 DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSA 529 (641)
Q Consensus 452 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~ 529 (641)
...+..+...+...|++++|...|+++... .+.+...+..+...+...|++++|++.+++. . ...+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666677777778888888888877762 2234667777788888888888888888775 2 22346678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh
Q 040576 530 CSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKW 570 (641)
Q Consensus 530 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 570 (641)
+...|++++|...++++++..|+++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988875
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.63 E-value=1.1e-07 Score=77.77 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 040576 490 HYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASE 567 (641)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 567 (641)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455677888999999999999887 2234 5778888999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhhC
Q 040576 568 GKWDEVENLRRIMKEK 583 (641)
Q Consensus 568 g~~~~A~~~~~~m~~~ 583 (641)
|++++|+..+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998544
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.63 E-value=2.3e-07 Score=76.67 Aligned_cols=94 Identities=3% Similarity=-0.072 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG-------PYV 558 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 558 (641)
...+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667888888889999999888876 2233 4678888999999999999999999999999887754 677
Q ss_pred HHHHHHHhcCChHHHHHHHHHhh
Q 040576 559 LLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
.++.+|...|++++|++.+++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 78889999999999999999983
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=7.2e-06 Score=78.95 Aligned_cols=202 Identities=12% Similarity=-0.082 Sum_probs=137.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhH---HHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 040576 339 FDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLL---STSLLTMYAKCGVMDLARNVFDNMTEK 415 (641)
Q Consensus 339 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~ 415 (641)
+.++......|+..++..+...+.-.- +.+.......+... +...+..+...|++++|...+++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 444444445677766666665543221 11111111222222 233467788899999999999887641
Q ss_pred ---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhhccHHHHHHHHHHhHHh
Q 040576 416 ---NV------VSWNSMIMGYGMHGQGEKALEMFMEMEKRGPT-PN----DATFICVLSACTHAGMVLEGWWYFDLMQRI 481 (641)
Q Consensus 416 ---~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 481 (641)
+. ..+..+...+...|++++|+..|++..+.... ++ ..+++.+...|...|++++|..+|+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 12334667777788999999999999884322 22 236888999999999999999999998752
Q ss_pred h----CCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 040576 482 Y----KIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-------PMEAG-PALWGALLSACSTHS-NSELGKIVAQHLM 547 (641)
Q Consensus 482 ~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~ 547 (641)
. +..+. ..+|..+...|.+.|++++|++.+++. ...+. ...+..+..++...| ++++|...+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 12222 347888999999999999999998875 12222 567888999999999 5799999999987
Q ss_pred hc
Q 040576 548 EL 549 (641)
Q Consensus 548 ~~ 549 (641)
++
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=7.2e-07 Score=83.39 Aligned_cols=137 Identities=11% Similarity=-0.018 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHH
Q 040576 420 WNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK--VEHYGCMVDL 497 (641)
Q Consensus 420 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~ 497 (641)
+-.....+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+.... .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 3445667778888888888888777643 4443444555577788888888888875544 11 121 2356677888
Q ss_pred HhhcCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 040576 498 LGRAGLMRDSEELVSKLPME---AG--PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLS 561 (641)
Q Consensus 498 ~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 561 (641)
+.+.|++++|+..|++.... |. ...+.....++.+.|+.++|...|+++...+|+ +..+..|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 88899999999888877212 33 336667777888999999999999999999988 66655554
No 149
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=3.6e-07 Score=75.61 Aligned_cols=117 Identities=8% Similarity=0.010 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRD-------PGPYV 558 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 558 (641)
...+..+...+...|++++|+..+++. . .+.+...+..+...+...|++++|...++++++..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345667777788888888888888776 1 23456778888888999999999999999999988766 77899
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 040576 559 LLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCR 631 (641)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~ 631 (641)
.++.+|...|++++|.+.++++ .+..| +.. ....++.+...+++..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~------------------------~~~~~-~~~--~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKS------------------------LAEHR-TPD--VLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------------------HHHCC-CHH--HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhccHHHHHHHHHHH------------------------HHhCC-CHH--HHHHHHHHHHHHHHhh
Confidence 9999999999999999999998 45566 466 7888888888777654
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.58 E-value=5.9e-07 Score=78.02 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
...+..+...+...|++++|...|++. . .+.+...+..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455777888899999999999999986 2 23457788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHH--HHHHHhhhc
Q 040576 566 SEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEI--GAQMKMCRR 632 (641)
Q Consensus 566 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l--~~~~~~~~~ 632 (641)
..|++++|.+.++++ .+.+|++.. ++..++.. ....++..+
T Consensus 93 ~~~~~~~A~~~~~~a------------------------~~~~p~~~~--~~~~~~~~~~~~~~~~~~~ 135 (166)
T 1a17_A 93 ALGKFRAALRDYETV------------------------VKVKPHDKD--AKMKYQECNKIVKQKAFER 135 (166)
T ss_dssp HTTCHHHHHHHHHHH------------------------HHHSTTCHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH------------------------HHhCCCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 566788777 66555544 333444433
No 151
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=3.9e-07 Score=75.39 Aligned_cols=107 Identities=14% Similarity=0.075 Sum_probs=81.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHH
Q 040576 493 CMVDLLGRAGLMRDSEELVSKL-PMEAG-P---ALWGALLSACSTHSNSELGKIVAQHLMELEPRD---PGPYVLLSNIY 564 (641)
Q Consensus 493 ~li~~~~~~g~~~~A~~~~~~~-~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 564 (641)
.+...+.+.|++++|++.|+++ ...|+ . ..+..+..++...|++++|...++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 4556677788888888877765 11222 2 466777788888999999999999999999988 66788899999
Q ss_pred HhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHH
Q 040576 565 ASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGA 625 (641)
Q Consensus 565 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~ 625 (641)
...|++++|...++++ .+..|++.. ......++..
T Consensus 87 ~~~g~~~~A~~~~~~~------------------------~~~~p~~~~--~~~a~~~l~~ 121 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQV------------------------ATQYPGSDA--ARVAQERLQS 121 (129)
T ss_dssp HHTTCHHHHHHHHHHH------------------------HHHSTTSHH--HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH------------------------HHHCCCChH--HHHHHHHHHH
Confidence 9999999999999988 566677777 6555555443
No 152
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=1.7e-07 Score=79.81 Aligned_cols=114 Identities=9% Similarity=0.051 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 040576 490 HYGCMVDLLGRAGLMRDSEELVSKLPMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEG 568 (641)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 568 (641)
....+.+.+...+.+.+++ ...|+ ...+..+...+...|++++|+..|+++++++|+++..|..++.+|...|
T Consensus 11 ~~~~l~~~~~~~~~l~~al------~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 84 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDIN------AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGC------CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHh------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Confidence 3445555554444433332 33454 4477888889999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhcccc
Q 040576 569 KWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRRDVA 635 (641)
Q Consensus 569 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 635 (641)
++++|+..++++ .+++|++.. .+..++..+..+++..+++.
T Consensus 85 ~~~~Ai~~~~~a------------------------l~l~P~~~~--~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 85 QFQQAADLYAVA------------------------FALGKNDYT--PVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp CHHHHHHHHHHH------------------------HHHSSSCCH--HHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHH------------------------HhhCCCCcH--HHHHHHHHHHHcCCHHHHHH
Confidence 999999999999 788999999 99999999999988877654
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.53 E-value=4.2e-07 Score=72.76 Aligned_cols=98 Identities=16% Similarity=0.009 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPR--DPGPYVLLSNI 563 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 563 (641)
...+..+...+.+.|++++|+..+++. . ...+...|..+...+...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777888888888888888776 2 2345667888888899999999999999999999999 88999999999
Q ss_pred HHhc-CChHHHHHHHHHhhhCCC
Q 040576 564 YASE-GKWDEVENLRRIMKEKEL 585 (641)
Q Consensus 564 ~~~~-g~~~~A~~~~~~m~~~~~ 585 (641)
|... |++++|.+.+++.....+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999866544
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=2.1e-06 Score=77.32 Aligned_cols=153 Identities=8% Similarity=-0.080 Sum_probs=82.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhh---CCCC-chHHHHHHHHHHhhcCCH
Q 040576 429 MHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIY---KIEP-KVEHYGCMVDLLGRAGLM 504 (641)
Q Consensus 429 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~ 504 (641)
..|++++|.++++.+.. ........+..+...+...|++++|...+++..... +..| ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 111123345555555556666666666665554411 1111 134455566666666666
Q ss_pred HHHHHHHHhCC----CCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----chHHHHHHHHHhcCC
Q 040576 505 RDSEELVSKLP----MEA-G----PALWGALLSACSTHSNSELGKIVAQHLMELEP--RDP----GPYVLLSNIYASEGK 569 (641)
Q Consensus 505 ~~A~~~~~~~~----~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~ 569 (641)
++|.+.+++.. ..+ + ...+..+...+...|++++|...+++++++.+ +++ ..+..++.+|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 66666665541 011 2 22355566667777777777777777765432 111 235677888888888
Q ss_pred hHHHHHHHHHhhh
Q 040576 570 WDEVENLRRIMKE 582 (641)
Q Consensus 570 ~~~A~~~~~~m~~ 582 (641)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877643
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.53 E-value=7.1e-08 Score=87.05 Aligned_cols=168 Identities=9% Similarity=-0.076 Sum_probs=99.1
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHH
Q 040576 395 MYAKCGVMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEG 471 (641)
Q Consensus 395 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 471 (641)
+....|+++++.+.|+.-.+ .....+..+...+...|++++|+..|++..+.. |+...+... ....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~- 81 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLD- 81 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHH-
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHH-
Confidence 33445556655555554332 133455666666677777777777777766532 111000000 0000
Q ss_pred HHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040576 472 WWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMEL 549 (641)
Q Consensus 472 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 549 (641)
.... .....+..+..+|.+.|++++|+..+++. . ...+...+..+..++...|++++|...+++++++
T Consensus 82 -----~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 82 -----KKKN-----IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -----HHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0000 01356677788888888888888888876 2 2245678888889999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHH-HHHHHhhhC
Q 040576 550 EPRDPGPYVLLSNIYASEGKWDEVE-NLRRIMKEK 583 (641)
Q Consensus 550 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 583 (641)
.|+++..+..++.++...|+.+++. ..+..|...
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988888777 556666443
No 156
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=5.3e-06 Score=79.89 Aligned_cols=162 Identities=10% Similarity=-0.127 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 040576 388 LSTSLLTMYAKCGVMDLARNVFDNMTE--K-NV------VSWNSMIMGYGMHGQGEKALEMFMEMEKRGP---TPN--DA 453 (641)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~ 453 (641)
.+...+..+...|++++|.+.+....+ + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334456677778888888887765432 1 11 2234455667777888899888888775321 122 34
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-----hHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC-H
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-----VEHYGCMVDLLGRAGLMRDSEELVSKLP-------MEAG-P 520 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~-~ 520 (641)
++..+...|...|++++|..+|+++.+.....|+ ..++..+..+|.+.|++++|++.+++.- .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888889999999988888732111222 2577788888889999999988888651 1111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 040576 521 ALWGALLSACSTHSNSELG-KIVAQHLMEL 549 (641)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 549 (641)
.++..+..++...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5777888888899999998 7778877653
No 157
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.49 E-value=2.9e-07 Score=78.42 Aligned_cols=115 Identities=8% Similarity=-0.062 Sum_probs=87.4
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 040576 439 MFMEMEKRGPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-P 515 (641)
Q Consensus 439 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 515 (641)
.|+++... .|+ ...+..+...+...|++++|...|+.+.. ..| +...|..+..+|...|++++|++.|++. .
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444432 343 34566677788888999999999988877 234 4677788888888999999999988886 2
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 040576 516 ME-AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYV 558 (641)
Q Consensus 516 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 558 (641)
.. .++..+..+..++...|++++|+..|++++++.|+++....
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 22 34667888888999999999999999999999998876543
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.49 E-value=1e-06 Score=90.74 Aligned_cols=148 Identities=13% Similarity=0.011 Sum_probs=102.6
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-------------hHHHHHHHH
Q 040576 431 GQGEKALEMFMEMEKRGPTP-NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-------------VEHYGCMVD 496 (641)
Q Consensus 431 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~li~ 496 (641)
+++++|...|+...+. .| ....+..+...+.+.|++++|+..|+++.+.....++ ...|..+..
T Consensus 248 ~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445555555443332 22 3447778888899999999999999999873222211 467777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHH
Q 040576 497 LLGRAGLMRDSEELVSKL-PM-EAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVE 574 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 574 (641)
+|.+.|++++|+..++++ .. ..+...|..+..+|...|++++|+..|+++++++|++...+..++.++.+.|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876 22 2346677778888888888888888888888888888888888888888888887766
Q ss_pred H-HHHHh
Q 040576 575 N-LRRIM 580 (641)
Q Consensus 575 ~-~~~~m 580 (641)
+ .+++|
T Consensus 406 ~~~~~~~ 412 (457)
T 1kt0_A 406 RRIYANM 412 (457)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 4 45555
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=5.7e-07 Score=86.08 Aligned_cols=177 Identities=6% Similarity=-0.096 Sum_probs=122.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHH
Q 040576 416 NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCM 494 (641)
Q Consensus 416 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 494 (641)
+...+..+...+...|++++|+..|++..+.... +...|..+..++.+.|++++|...++++.+ +.|+ ...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 4567788888999999999999999998886322 667888888899999999999999999876 4454 6778888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHH
Q 040576 495 VDLLGRAGLMRDSEELVSKL-PMEAGP-ALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDE 572 (641)
Q Consensus 495 i~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 572 (641)
..+|...|++++|+..|++. ...|+. ..+...+..... ...+...........|.++.....++..+ .|++++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 99999999999999998876 111211 011111111111 11222222333345677777777776654 688899
Q ss_pred HHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHH
Q 040576 573 VENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQM 627 (641)
Q Consensus 573 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~ 627 (641)
|++.+++. .+++|++.. +...++.+..+.
T Consensus 154 A~~~~~~a------------------------l~~~p~~~~--~~~~l~~~~~~~ 182 (281)
T 2c2l_A 154 ELEECQRN------------------------HEGHEDDGH--IRAQQACIEAKH 182 (281)
T ss_dssp HHTTTSGG------------------------GTTTSCHHH--HTHHHHHHHHHH
T ss_pred HHHHHHhh------------------------hccccchhh--hhhHHHHHHHHH
Confidence 98888877 667788777 777776666554
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.47 E-value=2.4e-05 Score=75.29 Aligned_cols=191 Identities=12% Similarity=0.011 Sum_probs=102.0
Q ss_pred HHHHHHHhhcCC---CChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc-HHHHHHHHH
Q 040576 403 DLARNVFDNMTE---KNVVSWNSMIMGYGMHG--QGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGM-VLEGWWYFD 476 (641)
Q Consensus 403 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~ 476 (641)
++++.+++.+.. .+..+|+.-.-.+...+ .+++++.+++++.+...+ |...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 344444444432 34444544444444444 255555555555554322 44444444444444454 455555555
Q ss_pred HhHHhhCCCCchHHHHHHHHHHhhc--------------CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc-------
Q 040576 477 LMQRIYKIEPKVEHYGCMVDLLGRA--------------GLMRDSEELVSKL--PMEAGPALWGALLSACSTH------- 533 (641)
Q Consensus 477 ~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~------- 533 (641)
.+.+ . -+-|...|+....++.+. +.++++++.+.+. ..+.|...|+-+-..+...
T Consensus 170 ~~I~-~-~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLIT-R-NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHH-H-CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHH-H-CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 5555 1 122334444433333332 3355666666554 1223444555443333332
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH---HhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccc
Q 040576 534 ----SNSELGKIVAQHLMELEPRDPGPYVLLSNIY---ASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVE 606 (641)
Q Consensus 534 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (641)
+.+++++..++++++++|++.-.+..++... ...|..+++...+.++ .+
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l------------------------~~ 303 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL------------------------KA 303 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHH------------------------HH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHH------------------------HH
Confidence 4578888889999999998854443333221 2457777888888887 67
Q ss_pred cCCCCchhhHHHHHHH
Q 040576 607 NCPPHRKCIVYSMLGE 622 (641)
Q Consensus 607 ~~p~~~~~~~~~~l~~ 622 (641)
++|.... .|.-|+.
T Consensus 304 ~Dp~r~~--~y~d~~~ 317 (331)
T 3dss_A 304 VDPMRAA--YLDDLRS 317 (331)
T ss_dssp HCGGGHH--HHHHHHH
T ss_pred hCcchhh--HHHHHHH
Confidence 8888887 7766654
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=2.4e-06 Score=77.02 Aligned_cols=153 Identities=10% Similarity=-0.017 Sum_probs=88.4
Q ss_pred hcCCHHHHHH---HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhhccHH
Q 040576 398 KCGVMDLARN---VFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKR----GPTP-NDATFICVLSACTHAGMVL 469 (641)
Q Consensus 398 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~ 469 (641)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+. |..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 443322233455666666666777777777776665541 1111 1235556666677777777
Q ss_pred HHHHHHHHhHHhh---CCCC--chHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCH----HHHHHHHHHHHhcCCH
Q 040576 470 EGWWYFDLMQRIY---KIEP--KVEHYGCMVDLLGRAGLMRDSEELVSKLP----MEAGP----ALWGALLSACSTHSNS 536 (641)
Q Consensus 470 ~a~~~~~~~~~~~---~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~l~~~~~~~g~~ 536 (641)
+|...+++..... +-.| ....+..+...+...|++++|.+.+++.- ..++. ..+..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 7777777766521 1111 13445666777777777777777776541 11222 2345666677788888
Q ss_pred HHHHHHHHHHHhcC
Q 040576 537 ELGKIVAQHLMELE 550 (641)
Q Consensus 537 ~~a~~~~~~~~~~~ 550 (641)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776643
No 162
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.44 E-value=1.5e-06 Score=76.59 Aligned_cols=128 Identities=10% Similarity=0.081 Sum_probs=98.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHH-HhhcCCH--
Q 040576 428 GMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDL-LGRAGLM-- 504 (641)
Q Consensus 428 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 504 (641)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888999998888764 2356788888889999999999999999988722 2346677778888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 040576 505 RDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYV 558 (641)
Q Consensus 505 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 558 (641)
++|+..++++ ...| +...+..+...+...|++++|...++++++..|+++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999887 2233 4678888888999999999999999999999999875443
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=3.2e-06 Score=68.21 Aligned_cols=110 Identities=11% Similarity=-0.016 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 040576 453 ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PME-AGPALWGALLSAC 530 (641)
Q Consensus 453 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~ 530 (641)
..+..+...+...|++++|...|+.+... .+.+...+..+..++.+.|++++|...+++. ... .+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666667777777777766651 1224556666677777777777777777665 122 3466777788888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 040576 531 STHSNSELGKIVAQHLMELEPRDPGPYVLLSNIY 564 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 564 (641)
...|++++|...++++++..|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8888888888888888888888877777766553
No 164
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.44 E-value=1.8e-07 Score=76.03 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=58.4
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHH
Q 040576 501 AGLMRDSEELVSKL-PM---EAG-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVEN 575 (641)
Q Consensus 501 ~g~~~~A~~~~~~~-~~---~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 575 (641)
.|++++|+..|++. .. .|+ ...+..+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46667777777765 22 133 34667777778888888888888888888888888888888888888888888888
Q ss_pred HHHHh
Q 040576 576 LRRIM 580 (641)
Q Consensus 576 ~~~~m 580 (641)
.+++.
T Consensus 83 ~~~~a 87 (117)
T 3k9i_A 83 LLLKI 87 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88887
No 165
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.43 E-value=0.00023 Score=73.65 Aligned_cols=120 Identities=8% Similarity=-0.054 Sum_probs=57.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHH
Q 040576 354 LMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCG-VMDLARNVFDNMTE---KNVVSWNSMIMGYGM 429 (641)
Q Consensus 354 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 429 (641)
|...+....+.++.+.|..+|+.+ +.. ..+..+|......-...+ +.+.|..+|+...+ .+...|...+.-...
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 444444444455566666666655 211 122233332222222222 46666666655442 123334444555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 430 HGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 430 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
.|+.+.|..+|+++. .....+...+.--...|+.+.+.+++++...
T Consensus 367 ~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 367 IGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666652 1234444555444455666666666666553
No 166
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.42 E-value=8.7e-07 Score=88.24 Aligned_cols=137 Identities=8% Similarity=0.002 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 040576 452 DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEA-GPALWGALLSAC 530 (641)
Q Consensus 452 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~ 530 (641)
...+..+...+.+.|++++|++.|+++.+. .+... .....+++.+ ..| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 445677777888888888888888888761 11100 0011111111 112 345777888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCC
Q 040576 531 STHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPP 610 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 610 (641)
...|++++|+..++++++++|+++.+|..++.+|...|++++|++.++++ .+++|+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A------------------------l~l~P~ 339 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA------------------------QEIAPE 339 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHHCTT
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHH------------------------HHhCCC
Confidence 99999999999999999999999999999999999999999999999988 677888
Q ss_pred CchhhHHHHHHHHHHHHHhhhcc
Q 040576 611 HRKCIVYSMLGEIGAQMKMCRRD 633 (641)
Q Consensus 611 ~~~~~~~~~l~~l~~~~~~~~~~ 633 (641)
+.. +...|+.+...+++..+.
T Consensus 340 ~~~--~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 340 DKA--IQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CHH--HHHHHHHHHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHHHHHH
Confidence 888 888898888887766554
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=2.7e-05 Score=75.28 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=26.2
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 551 PRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 551 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
+..+.++..|+++|...|+.++|.++++.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4556678889999999999999999999884
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.40 E-value=3.5e-06 Score=73.08 Aligned_cols=109 Identities=10% Similarity=-0.043 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 040576 452 DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLS 528 (641)
Q Consensus 452 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 528 (641)
...+..+...+...|++++|+..|++..+ +.| +...|..+..+|.+.|++++|++.|++. ...| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44666777778888888888888888877 234 4677778888888888888888888876 2233 4778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 040576 529 ACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNI 563 (641)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 563 (641)
++...|++++|...|+++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999999876666543
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=4.6e-06 Score=70.57 Aligned_cols=111 Identities=11% Similarity=-0.075 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHH
Q 040576 452 DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK----VEHYGCMVDLLGRAGLMRDSEELVSKL-PME-AGPALWGA 525 (641)
Q Consensus 452 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~ 525 (641)
...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|++.+++. ... .+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 44555566666666666666666666655 3344 455666677777777777777777665 222 34667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
+..++...|++++|...+++++++.|+++..+..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888888899999999999999999888777776666543
No 170
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.39 E-value=2.1e-06 Score=68.67 Aligned_cols=93 Identities=9% Similarity=-0.013 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeee
Q 040576 519 GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGE 598 (641)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 598 (641)
+...|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|++.+++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------ 64 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG------------------ 64 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH------------------
Confidence 45567778888889999999999999999999999999999999999999999999999988
Q ss_pred eecccccccCCCC------chhhHHHHHHHHHHHHHhhhcccccc
Q 040576 599 FASESIVENCPPH------RKCIVYSMLGEIGAQMKMCRRDVASQ 637 (641)
Q Consensus 599 ~~~~~~~~~~p~~------~~~~~~~~l~~l~~~~~~~~~~~~~~ 637 (641)
.+++|++ .. ++..++.....+++...++...
T Consensus 65 ------l~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 65 ------LRYTSTAEHVAIRSK--LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp ------HTSCSSTTSHHHHHH--HHHHHHHHHHHHHCCCCCSSSS
T ss_pred ------HHhCCCccHHHHHHH--HHHHHHHHHHHHHhHhhhHhHH
Confidence 6667777 66 7888888888888776665543
No 171
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.39 E-value=2.9e-06 Score=69.80 Aligned_cols=109 Identities=6% Similarity=-0.168 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACS 531 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 531 (641)
.+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4555566666677777777777776661 1223566666777777777777777777765 2223 3567777777888
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 040576 532 THSNSELGKIVAQHLMELE------PRDPGPYVLLSNIY 564 (641)
Q Consensus 532 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 564 (641)
..|++++|...++++++++ |.+...+..+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888888 77766666665554
No 172
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=2.1e-06 Score=72.52 Aligned_cols=107 Identities=10% Similarity=-0.045 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PM-EAGPALWGALLSAC 530 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~ 530 (641)
.+..+...+.+.|++++|...|+.+.. ..| +...|..+..+|.+.|++++|+..|++. .. +.++..+..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 455566677788888888888888876 233 4667777888888888888888888876 22 23456777888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 040576 531 STHSNSELGKIVAQHLMELEPRDPGPYVLLSNI 563 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 563 (641)
...|++++|...+++++++.|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999887665544433
No 173
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=0.00016 Score=69.99 Aligned_cols=230 Identities=11% Similarity=0.062 Sum_probs=152.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-C
Q 040576 326 YVRCKDYCECLRLFDRMIRGDAKPNE-ASLMSVLTACANMG-VIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKC-G-V 401 (641)
Q Consensus 326 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~ 401 (641)
....+..++|+++++++... .|+. ..|+.--..+...| .++++..+++.+.... +-+..+|+.-..++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 33444556777777777763 3443 34555555555566 4777777777777654 34566666665666655 6 7
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc---
Q 040576 402 MDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGE--------KALEMFMEMEKRGPTPNDATFICVLSACTHAGM--- 467 (641)
Q Consensus 402 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--- 467 (641)
+++++++++.+.+ +|..+|+.-.-.+.+.|+++ ++++.++++.+..+. |...++.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 7888888888876 35556666555555555555 899999999987544 67777777777766665
Q ss_pred ----HHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCH--------------------HHHHHHHHhCC-C-----
Q 040576 468 ----VLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLM--------------------RDSEELVSKLP-M----- 516 (641)
Q Consensus 468 ----~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~-~----- 516 (641)
+++++++++++.. ..| |...|+.+-..+.+.|+. .+..+...++. .
T Consensus 220 ~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred chHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 7888888888877 334 466777766667666653 34444444442 1
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHHHHHH
Q 040576 517 --EAGPALWGALLSACSTHSNSELGKIVAQHLM-ELEPRDPGPYVLLSN 562 (641)
Q Consensus 517 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 562 (641)
.+....+..|+..|...|+.++|..+++.+. +.+|-....|...+.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2567788889999999999999999999986 678876666655544
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.37 E-value=8.2e-05 Score=71.61 Aligned_cols=193 Identities=10% Similarity=0.022 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC-hHHHHHHH
Q 040576 367 IDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCG--VMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQ-GEKALEMF 440 (641)
Q Consensus 367 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~A~~~~ 440 (641)
++++..+++.+.... +-+..+|+.-.-++.+.| .+++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 466677777777654 446666766666666666 47888888888774 566777777777777787 58899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhh--------------ccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhc----
Q 040576 441 MEMEKRGPTPNDATFICVLSACTHA--------------GMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRA---- 501 (641)
Q Consensus 441 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~---- 501 (641)
.++.+..+. |...|+.....+.+. +.++++++++..... ..|+ ...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCcc
Confidence 998887544 666666655555444 568889999988887 3444 56666555555544
Q ss_pred -------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 502 -------GLMRDSEELVSKL-PMEAGPALWGALLSA-----CSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 502 -------g~~~~A~~~~~~~-~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
+.++++++.++++ ...|+. .|..+..+ ....|..++....+.++++++|...+-|..+...+.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 4578899888887 345664 34322222 224678889999999999999998888887765543
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.32 E-value=6.6e-06 Score=84.66 Aligned_cols=144 Identities=7% Similarity=-0.070 Sum_probs=108.9
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHH
Q 040576 401 VMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN--------------DATFICVLSACT 463 (641)
Q Consensus 401 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~ 463 (641)
++++|...|+...+ .....|..+...|.+.|++++|+..|++..+...... ...|..+..++.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332 2355788899999999999999999999988532211 478888999999
Q ss_pred hhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 040576 464 HAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG-PALWGALLSACSTHSNSELGK 540 (641)
Q Consensus 464 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~ 540 (641)
+.|++++|+..++++.+ +.| +...|..+..+|...|++++|+..|+++ ...|+ ...+..+..++...++.+++.
T Consensus 329 ~~g~~~~A~~~~~~al~---~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 329 KLREYTKAVECCDKALG---LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 334 4788899999999999999999999987 44555 447778888888888888776
Q ss_pred HH-HHHHH
Q 040576 541 IV-AQHLM 547 (641)
Q Consensus 541 ~~-~~~~~ 547 (641)
.. +++++
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 43 44443
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.32 E-value=2.1e-06 Score=70.06 Aligned_cols=87 Identities=11% Similarity=-0.097 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecc
Q 040576 523 WGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASE 602 (641)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 602 (641)
+..+...+...|++++|+..++++++.+|+++..|..++.++...|++++|+..+++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a---------------------- 77 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA---------------------- 77 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------
Confidence 5556778899999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCCchhhHHHHHHHHHHHHHhhhcccc
Q 040576 603 SIVENCPPHRKCIVYSMLGEIGAQMKMCRRDVA 635 (641)
Q Consensus 603 ~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 635 (641)
.+++|++.. .+..|+.+...+++..+++.
T Consensus 78 --l~l~P~~~~--~~~~la~~~~~~g~~~~A~~ 106 (121)
T 1hxi_A 78 --RMLDPKDIA--VHAALAVSHTNEHNANAALA 106 (121)
T ss_dssp --HHHCTTCHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred --HHhCCCCHH--HHHHHHHHHHHcCCHHHHHH
Confidence 788999999 99999999999988777654
No 177
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.29 E-value=6.1e-06 Score=68.85 Aligned_cols=100 Identities=5% Similarity=-0.215 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHH
Q 040576 451 NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PM-EAGPALWGALLS 528 (641)
Q Consensus 451 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~ 528 (641)
+...+..+...+...|++++|...|+.+... .+.+...+..+..+|...|++++|+..+++. .. +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556667777777777777777777777661 1223566777777777788888887777765 22 234667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 040576 529 ACSTHSNSELGKIVAQHLMELEPR 552 (641)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~p~ 552 (641)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888888777
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.27 E-value=1.1e-06 Score=86.60 Aligned_cols=112 Identities=9% Similarity=-0.056 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040576 452 DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACS 531 (641)
Q Consensus 452 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 531 (641)
...+..+...+.+.|++++|...|+++.. +.|+... +...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 44667777788889999999999999877 3354321 233444444444332 135677777788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 532 THSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 532 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
..|++++|+..++++++++|+++..|..++.+|...|++++|...++++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888887
No 179
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.27 E-value=7.4e-06 Score=67.48 Aligned_cols=61 Identities=10% Similarity=-0.075 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
++..++..+.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|++.+++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455566666666666666666666654211 344555566666666666666666666554
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.26 E-value=3.6e-06 Score=87.00 Aligned_cols=117 Identities=6% Similarity=-0.026 Sum_probs=71.1
Q ss_pred HHHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 040576 460 SACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNS 536 (641)
Q Consensus 460 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 536 (641)
..+.+.|++++|.+.|+++.+ ..|+ ...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 345566777777777777766 2333 556666666677777777777766665 2223 345666666666677777
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCChHHHHHHHHH
Q 040576 537 ELGKIVAQHLMELEPRDPGPYVLLSNI--YASEGKWDEVENLRRI 579 (641)
Q Consensus 537 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 579 (641)
++|+..+++++++.|+++..+..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777777777777777666666666666 6666666666666554
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.25 E-value=2.8e-06 Score=87.86 Aligned_cols=121 Identities=9% Similarity=-0.055 Sum_probs=91.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHh
Q 040576 421 NSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLG 499 (641)
Q Consensus 421 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 499 (641)
..+...+.+.|++++|++.|++..+... -+...+..+..++.+.|++++|++.++++.+ +.| +...+..+..+|.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH
Confidence 3445567789999999999999998632 2577888999999999999999999999988 345 4778889999999
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 040576 500 RAGLMRDSEELVSKL-PMEAG-PALWGALLSA--CSTHSNSELGKIVAQH 545 (641)
Q Consensus 500 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~--~~~~g~~~~a~~~~~~ 545 (641)
+.|++++|++.+++. ...|+ ...+..+..+ +...|++++|+..+++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999986 22232 3345445544 7888999999999883
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=9.7e-06 Score=82.93 Aligned_cols=164 Identities=9% Similarity=-0.102 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhhccHHHHHHHHHHhHHhh---CCCC-chH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRG-PTPNDA----TFICVLSACTHAGMVLEGWWYFDLMQRIY---KIEP-KVE 489 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~ 489 (641)
++..++..|...|++++|.+++.++...- -.++.. ..+.+...+...|+++.|..+++...... +..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667777777888888877777765421 111211 22223333445677888888777765421 2222 245
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC----C
Q 040576 490 HYGCMVDLLGRAGLMRDSEELVSKL-------PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELEP---RD----P 554 (641)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~----~ 554 (641)
++..++..|...|++++|..++++. ..++. ...+..++..|...|++++|...++++....+ ++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6777888888888888888887765 11222 34667777788888888888888888876542 21 2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 555 GPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566677778888888888887777643
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.23 E-value=3.9e-06 Score=70.67 Aligned_cols=104 Identities=11% Similarity=-0.034 Sum_probs=71.7
Q ss_pred HHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-------------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC------
Q 040576 457 CVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-------------VEHYGCMVDLLGRAGLMRDSEELVSKL-PM------ 516 (641)
Q Consensus 457 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~------ 516 (641)
.....+.+.|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|+..+++. ..
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 344444555555555555555554 1222 226666777777777777777766654 23
Q ss_pred -CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 040576 517 -EAGP-ALW----GALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNI 563 (641)
Q Consensus 517 -~~~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 563 (641)
.|+. ..| .....++...|++++|+..|+++++++|++...+..+..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 6764 478 8899999999999999999999999999998766555443
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=7.3e-06 Score=70.39 Aligned_cols=129 Identities=12% Similarity=-0.006 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HH
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK----VEHYGCMVDLLGRAGLMRDSEELVSKL----PMEAG----PA 521 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~ 521 (641)
++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++. +..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555555441110011 134555666666666666666666654 11111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 522 LWGALLSACSTHSNSELGKIVAQHLMELEPR------DPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
.+..+...+...|++++|...++++++..+. ....+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4556666777788888888888877765321 134677888889999999999999888753
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.22 E-value=2.2e-06 Score=84.32 Aligned_cols=148 Identities=8% Similarity=-0.079 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 040576 417 VVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVD 496 (641)
Q Consensus 417 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 496 (641)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+ ....|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHH
Confidence 456788888899999999999999998874 444432 23345555543322 1236788899
Q ss_pred HHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCChHHH
Q 040576 497 LLGRAGLMRDSEELVSKL-PME-AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIY-ASEGKWDEV 573 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 573 (641)
+|.+.|++++|+..+++. ... .+...|..+..+|...|++++|+..|+++++++|+++..+..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 223 45778999999999999999999999999999999999999998884 455778888
Q ss_pred HHHHHHhhhCC
Q 040576 574 ENLRRIMKEKE 584 (641)
Q Consensus 574 ~~~~~~m~~~~ 584 (641)
...+++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 89999885543
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=1.9e-05 Score=83.13 Aligned_cols=173 Identities=11% Similarity=0.025 Sum_probs=139.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc----------HHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh
Q 040576 431 GQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGM----------VLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR 500 (641)
Q Consensus 431 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 500 (641)
...++|++.++++...... +...|+.--.++...|+ ++++++.++.+.+ .-+-+..+|..-.-++.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3456789999999886422 44566665556666666 8999999999988 223346778877778888
Q ss_pred cC--CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--------
Q 040576 501 AG--LMRDSEELVSKL--PMEAGPALWGALLSACSTHS-NSELGKIVAQHLMELEPRDPGPYVLLSNIYASE-------- 567 (641)
Q Consensus 501 ~g--~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------- 567 (641)
.| +++++++.++++ ....+...|+.-...+...| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 88 779999999988 23456778988888888888 899999999999999999999999999998874
Q ss_pred ------CChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhhc
Q 040576 568 ------GKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCRR 632 (641)
Q Consensus 568 ------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~~ 632 (641)
+.+++|++.++++ ...+|+++. ++.-++.+..+.++..+
T Consensus 200 ~~~~~~~~~~eel~~~~~a------------------------i~~~P~~~s--aW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNA------------------------FFTDPNDQS--AWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHH------------------------HHHCSSCSH--HHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHH------------------------HhhCCCCcc--HHHHHHHHHhcCCCccc
Confidence 5678999999988 788999999 99999998888776444
No 187
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.22 E-value=8.4e-06 Score=62.24 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeee
Q 040576 520 PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEF 599 (641)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 599 (641)
...+..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------- 69 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA------------------- 69 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH-------------------
Confidence 3456667777778888888888888888888888878888888888888888888888877
Q ss_pred ecccccccCCCCchhhHHHHHHHHHHHH
Q 040576 600 ASESIVENCPPHRKCIVYSMLGEIGAQM 627 (641)
Q Consensus 600 ~~~~~~~~~p~~~~~~~~~~l~~l~~~~ 627 (641)
.+.+|++.. .+..++.+...+
T Consensus 70 -----~~~~p~~~~--~~~~l~~~~~~~ 90 (91)
T 1na3_A 70 -----LELDPNNAE--AKQNLGNAKQKQ 90 (91)
T ss_dssp -----HHHCTTCHH--HHHHHHHHHHHH
T ss_pred -----HhcCCCCHH--HHHHHHHHHHhc
Confidence 566777777 777777766543
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.19 E-value=1.3e-06 Score=73.49 Aligned_cols=108 Identities=9% Similarity=0.055 Sum_probs=76.3
Q ss_pred hhccHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040576 464 HAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIV 542 (641)
Q Consensus 464 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 542 (641)
+.+.+++|.+.++...+ ..| +...|..+..++...|+++.+.+.++ .+++|+..
T Consensus 14 r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~~ 68 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHHH
Confidence 44555666666666555 223 34455555555555554443333221 37899999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcC-----------ChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCC
Q 040576 543 AQHLMELEPRDPGPYVLLSNIYASEG-----------KWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPH 611 (641)
Q Consensus 543 ~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 611 (641)
|+++++++|++..+|+.++.+|...| ++++|++.+++. .+++|++
T Consensus 69 le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA------------------------l~l~P~~ 124 (158)
T 1zu2_A 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA------------------------VDEQPDN 124 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------------------------HHHCTTC
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH------------------------HHhCCCC
Confidence 99999999999999999999999875 899999999999 7888888
Q ss_pred chhhHHHHHHH
Q 040576 612 RKCIVYSMLGE 622 (641)
Q Consensus 612 ~~~~~~~~l~~ 622 (641)
.. ....|..
T Consensus 125 ~~--y~~al~~ 133 (158)
T 1zu2_A 125 TH--YLKSLEM 133 (158)
T ss_dssp HH--HHHHHHH
T ss_pred HH--HHHHHHH
Confidence 77 5555544
No 189
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.17 E-value=6.7e-06 Score=67.71 Aligned_cols=106 Identities=6% Similarity=-0.083 Sum_probs=52.5
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----C-CCCC----HHHHHHH
Q 040576 456 ICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL----P-MEAG----PALWGAL 526 (641)
Q Consensus 456 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~-~~~~----~~~~~~l 526 (641)
..+...+...|++++|...|+.+.. . .+.+...+..+...|...|++++|...++++ + ..++ ...+..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKE-L-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3333444444444444444444443 1 1122334444444444444444444444443 0 0111 4455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 040576 527 LSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIY 564 (641)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 564 (641)
..++...|++++|...++++++..| ++.....+..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 6667777777777777777777766 354555555443
No 190
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.17 E-value=1.9e-05 Score=65.01 Aligned_cols=102 Identities=11% Similarity=-0.037 Sum_probs=66.1
Q ss_pred HHHHHHhhccHHHHHHHHHHhHHhhCCCCc-h---HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 040576 458 VLSACTHAGMVLEGWWYFDLMQRIYKIEPK-V---EHYGCMVDLLGRAGLMRDSEELVSKL-PMEAG----PALWGALLS 528 (641)
Q Consensus 458 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~ 528 (641)
+...+...|++++|...|+.+.+. .|+ . ..+..+..++.+.|++++|+..|++. ...|+ +..+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 444555667777777777766652 122 2 35556667777777777777777665 11222 455667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 040576 529 ACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSN 562 (641)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 562 (641)
++...|++++|...++++++..|+++........
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 7888888888888888888888887655444433
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.14 E-value=1.4e-05 Score=79.50 Aligned_cols=138 Identities=7% Similarity=-0.036 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCC-chHHHHHHH
Q 040576 417 VVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEP-KVEHYGCMV 495 (641)
Q Consensus 417 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 495 (641)
...|..+...+.+.|++++|+..|++..+. .++. ...... +.... ..| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~-------~~~~~---~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAED-------ADGAK---LQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCH-------HHHGG---GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccCh-------HHHHH---HHHHHHHHHHHHH
Confidence 456888899999999999999999988762 1110 000111 11111 122 356788889
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHH
Q 040576 496 DLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEV 573 (641)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 573 (641)
.+|.+.|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 4444 4678888999999999999999999999999999999999999999999888877
Q ss_pred HHH
Q 040576 574 ENL 576 (641)
Q Consensus 574 ~~~ 576 (641)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
No 192
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=1.6e-05 Score=63.19 Aligned_cols=99 Identities=9% Similarity=-0.025 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA---GPALWGALLSA 529 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~ 529 (641)
.+..+...+...|++++|...|+++.+. .+.+...+..+..++...|++++|++.+++. ...| +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555555666666666666666551 1223455556666666666666666666654 2222 35566667777
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCCC
Q 040576 530 CSTH-SNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 530 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 554 (641)
+... |++++|...++++.+..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 777777777777777777654
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.12 E-value=9.5e-06 Score=70.12 Aligned_cols=78 Identities=13% Similarity=0.020 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-PME-AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDP-GPYVLLSNIY 564 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 564 (641)
...|..+..+|.+.|++++|+..+++. ... .+...|..+..++...|++++|...++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 467788888899999999999988876 223 4467888899999999999999999999999999987 4455555443
Q ss_pred H
Q 040576 565 A 565 (641)
Q Consensus 565 ~ 565 (641)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=7.5e-05 Score=78.56 Aligned_cols=169 Identities=8% Similarity=-0.020 Sum_probs=131.6
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc-
Q 040576 401 VMDLARNVFDNMTE---KNVVSWNSMIMGYGMHGQ----------GEKALEMFMEMEKRGPTPNDATFICVLSACTHAG- 466 (641)
Q Consensus 401 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g- 466 (641)
..++|++.++.+.. .+..+|+.-..++...|+ ++++++.++++.+...+ +..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34566777777663 344567766666666666 89999999999987544 6678888777888888
Q ss_pred -cHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---------
Q 040576 467 -MVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAG-LMRDSEELVSKL-PME-AGPALWGALLSACSTH--------- 533 (641)
Q Consensus 467 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~--------- 533 (641)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++ ... -+...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999882 2335677887777788888 899999999887 333 4567888777776553
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHH
Q 040576 534 -----SNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDE 572 (641)
Q Consensus 534 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 572 (641)
+.++++.+.++++++.+|++..+|..+..++.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988655
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=2e-06 Score=68.77 Aligned_cols=94 Identities=12% Similarity=-0.007 Sum_probs=77.0
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 040576 487 KVEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRD------PGPYV 558 (641)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 558 (641)
+...+..+...+.+.|++++|++.|++. . .+.+...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888999999999988876 2 23457788889999999999999999999999999998 67788
Q ss_pred HHHHHHHhcCChHHHHHHHHHh
Q 040576 559 LLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~m 580 (641)
.++.++...|++++|.+.++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8888888888887776655544
No 196
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=4.4e-06 Score=67.70 Aligned_cols=93 Identities=13% Similarity=0.042 Sum_probs=65.0
Q ss_pred hccHHHHHHHHHHhHHhhCC-CC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 040576 465 AGMVLEGWWYFDLMQRIYKI-EP-KVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGK 540 (641)
Q Consensus 465 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 540 (641)
.|++++|+..|+++.+ .+. .| +...+..+..+|.+.|++++|++.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4677777788877766 210 23 3566777788888888888888888876 2223 4667777888888889999999
Q ss_pred HHHHHHHhcCCCCCchHH
Q 040576 541 IVAQHLMELEPRDPGPYV 558 (641)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~ 558 (641)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999888888865443
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.06 E-value=1.6e-05 Score=62.12 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 518 AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
.+...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|++.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35678889999999999999999999999999999999999999999999999999999999843
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=7.5e-05 Score=76.22 Aligned_cols=159 Identities=8% Similarity=-0.046 Sum_probs=118.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc
Q 040576 424 IMGYGMHGQGEKALEMFMEMEKRGPTPN----------------DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK 487 (641)
Q Consensus 424 i~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 487 (641)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888888877532211 124677899999999999999999998774333333
Q ss_pred h----HHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 040576 488 V----EHYGCMVDLLGRAGLMRDSEELVSKL-------PMEAG-PALWGALLSACSTHSNSELGKIVAQHLMELE----- 550 (641)
Q Consensus 488 ~----~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 550 (641)
. .+.+.+...+...|++++|.+++++. ...+. ..++..+...+...|++++|...++.+....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23344455566788999999888765 22333 4577888999999999999999999987642
Q ss_pred -CCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 551 -PRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 551 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
|.....+..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22235788899999999999999999998854
No 199
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=2.4e-05 Score=67.09 Aligned_cols=132 Identities=8% Similarity=-0.050 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc----hH
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPT-PN----DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK----VE 489 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 489 (641)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|..++++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555556666666666666555442100 11 124555566666667777777766665542111111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040576 490 HYGCMVDLLGRAGLMRDSEELVSKLP----MEAG----PALWGALLSACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
.+..+...+...|++++|.+.+++.- ...+ ...+..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45566667777777777777666541 1111 2345566667778888888888888877654
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=5e-05 Score=77.94 Aligned_cols=123 Identities=9% Similarity=-0.028 Sum_probs=86.6
Q ss_pred HHhhccHHHHHHHHHHhHHhhC--C---CCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 040576 462 CTHAGMVLEGWWYFDLMQRIYK--I---EPK-VEHYGCMVDLLGRAGLMRDSEELVSKL---------PMEAGP-ALWGA 525 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~~--~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~~ 525 (641)
+...|++++|+.++++..+... + .|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456777777776666654221 1 122 456777777777777777777776654 233443 36778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---hHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040576 526 LLSACSTHSNSELGKIVAQHLME-----LEPRDPG---PYVLLSNIYASEGKWDEVENLRRIMKEKE 584 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 584 (641)
|...|...|++++|+.+++++++ ++|++|. ....+..++...|++++|..+++++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999988875 5677764 44567888889999999999999998754
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.04 E-value=2.7e-05 Score=62.66 Aligned_cols=77 Identities=9% Similarity=0.054 Sum_probs=64.5
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 506 DSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 506 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
+|++.|++. ...| +...+..+...+...|++++|+..++++++.+|+++..|..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355555554 2233 4678888888999999999999999999999999999999999999999999999999999843
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.01 E-value=1.9e-05 Score=61.52 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=57.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccc
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELEPRDPG-PYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESI 604 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 604 (641)
....+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------------------ 61 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA------------------------ 61 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------
Confidence 344566777777777777777777777777 7777777777777777777777777
Q ss_pred cccCCCCchhhHH--HHHHHHHHHHHhhhccc
Q 040576 605 VENCPPHRKCIVY--SMLGEIGAQMKMCRRDV 634 (641)
Q Consensus 605 ~~~~p~~~~~~~~--~~l~~l~~~~~~~~~~~ 634 (641)
.+++|++.. .+ ..++++.....+....-
T Consensus 62 l~~~p~~~~--~~~~~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 62 IELNPDSPA--LQARKMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp HHHCTTSTH--HHHHHHHHHHHHHHCCTTHHH
T ss_pred HhcCCCcHH--HHHHHHHHHHHHHHHHHhccC
Confidence 566677776 65 55555555554444433
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.90 E-value=5.8e-05 Score=57.38 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKL-P-MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYA 565 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 565 (641)
...+..+...+.+.|++++|+..+++. . .+.+...+..+..++...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777778888888888888888876 2 22356678888889999999999999999999999999999999998887
Q ss_pred hcC
Q 040576 566 SEG 568 (641)
Q Consensus 566 ~~g 568 (641)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.85 E-value=7.4e-05 Score=57.10 Aligned_cols=67 Identities=10% Similarity=0.121 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040576 517 EAGPALWGALLSACSTHSN---SELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEK 583 (641)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 583 (641)
..++..+..+..++...++ .++|..+++++++++|+++..+..++..+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567788888888765554 799999999999999999999999999999999999999999999544
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00019 Score=59.84 Aligned_cols=112 Identities=7% Similarity=-0.156 Sum_probs=68.5
Q ss_pred ccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 040576 466 GMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACST----HSNSELGKI 541 (641)
Q Consensus 466 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 541 (641)
+++++|.++|++..+ .+ .|+. . |...|...+.+++|++.|++.-...++..+..|...|.. .++.++|..
T Consensus 9 ~d~~~A~~~~~~aa~-~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHc-CC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 455566666666555 33 1222 1 555555555566666666655333455556666666655 667777777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHh----cCChHHHHHHHHHhhhCCC
Q 040576 542 VAQHLMELEPRDPGPYVLLSNIYAS----EGKWDEVENLRRIMKEKEL 585 (641)
Q Consensus 542 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 585 (641)
.|+++.+. .++..+..|+.+|.. .+++++|.+++++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777665 455667777777777 6777777777777766543
No 206
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.71 E-value=0.00017 Score=59.82 Aligned_cols=99 Identities=9% Similarity=0.004 Sum_probs=78.9
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCChHHHHHHH
Q 040576 505 RDSEELVSKL--PMEAGPALWGALLSACSTHS---NSELGKIVAQHLMELE-P-RDPGPYVLLSNIYASEGKWDEVENLR 577 (641)
Q Consensus 505 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (641)
..+.+.|.+. ...++..+...+..++.+.+ ++++|+.+++.+++.+ | ++...++.|+-+|.+.|++++|++.+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444433 22467778888888888888 6779999999999988 6 56788999999999999999999999
Q ss_pred HHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHh
Q 040576 578 RIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKM 629 (641)
Q Consensus 578 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~ 629 (641)
+++ .+.+|++.. .......+...+.+
T Consensus 95 ~~l------------------------L~ieP~n~Q--A~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 95 RGL------------------------LQTEPQNNQ--AKELERLIDKAMKK 120 (152)
T ss_dssp HHH------------------------HHHCTTCHH--HHHHHHHHHHHHHH
T ss_pred HHH------------------------HhcCCCCHH--HHHHHHHHHHHHHH
Confidence 998 788999999 88888877777755
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.63 E-value=6.2e-05 Score=63.22 Aligned_cols=103 Identities=14% Similarity=0.087 Sum_probs=77.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccH----------HHHHHHHHHhHHhhCCCCc-hHHHHHHH
Q 040576 427 YGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMV----------LEGWWYFDLMQRIYKIEPK-VEHYGCMV 495 (641)
Q Consensus 427 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~~~p~-~~~~~~li 495 (641)
..+.+++++|...+++..+.... +...|..+..++...+++ ++|+..|++..+ +.|+ ...|..+.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 45667899999999999987533 677888888888888765 478888887777 4554 56677777
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 496 DLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
.+|...|.+ .|+... ..|++++|+..|+++++++|++.
T Consensus 88 ~ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCH
Confidence 777766643 244321 13789999999999999999985
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.53 E-value=0.00049 Score=70.59 Aligned_cols=122 Identities=10% Similarity=-0.063 Sum_probs=70.8
Q ss_pred HHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHhHHhh----C-CCCc-hHHHHH
Q 040576 427 YGMHGQGEKALEMFMEMEKR---GPTPN----DATFICVLSACTHAGMVLEGWWYFDLMQRIY----K-IEPK-VEHYGC 493 (641)
Q Consensus 427 ~~~~~~~~~A~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~ 493 (641)
+...|++++|+.++++..+. -+-|+ ..+++.|...|...|++++|..++++..... | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666655442 11122 2356666666777777777777666655421 1 1222 355667
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 494 MVDLLGRAGLMRDSEELVSKL---------PMEAGPA-LWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 494 li~~~~~~g~~~~A~~~~~~~---------~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
|...|...|++++|+.++++. +..|+.. +...+..++...+.+++|+..|+++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776654 1223322 233444556677778888888877765
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.49 E-value=0.0015 Score=54.31 Aligned_cols=113 Identities=9% Similarity=-0.065 Sum_probs=91.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhh----cCCHH
Q 040576 430 HGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGR----AGLMR 505 (641)
Q Consensus 430 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 505 (641)
.+++++|+.+|++..+.| .|+.. +...|...+.+++|.++|++..+ . -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356889999999999887 33443 66777777888889999999987 3 356677788888887 78999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 040576 506 DSEELVSKLPMEAGPALWGALLSACST----HSNSELGKIVAQHLMELEP 551 (641)
Q Consensus 506 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 551 (641)
+|+++|++.....++..+..|...|.. .++.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988445678888888888888 8999999999999988753
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.39 E-value=0.00038 Score=70.10 Aligned_cols=62 Identities=10% Similarity=0.049 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 521 ALWGALLSACSTHSNSELGKIVAQHLME-----LEPRDP---GPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
.+++.|..+|...|++++|+.+++++++ ++|++| ..|+.|+.+|..+|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3566777777778888888888877765 345555 4688899999999999999999999864
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.33 E-value=0.00035 Score=55.95 Aligned_cols=72 Identities=11% Similarity=0.010 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHH
Q 040576 538 LGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVY 617 (641)
Q Consensus 538 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 617 (641)
.|...++++++.+|+++..+..++.+|...|++++|+..+++. .+.+|++.. .+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------------l~~~p~~~~--~~ 56 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAA------------------------LDFDPTYSV--AW 56 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHHCTTCHH--HH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH------------------------HHHCCCcHH--HH
Confidence 4788899999999999999999999999999999999999998 677888888 88
Q ss_pred HHHHHHHHHHHhhhcccc
Q 040576 618 SMLGEIGAQMKMCRRDVA 635 (641)
Q Consensus 618 ~~l~~l~~~~~~~~~~~~ 635 (641)
..|+.++..+++..++..
T Consensus 57 ~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 57 KWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 889988888877766543
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.29 E-value=0.0018 Score=50.65 Aligned_cols=85 Identities=14% Similarity=0.031 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCce
Q 040576 519 GPALWGALLSACSTHSNSELGKIVAQHLMELE-------PRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGS 591 (641)
Q Consensus 519 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 591 (641)
++..+..++..+...|+++.|...++.+++.. +..+..+..|+.+|.+.|++++|+..++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a----------- 72 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL----------- 72 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH-----------
Confidence 45556678888899999999999999988753 234567999999999999999999999999
Q ss_pred EEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHh
Q 040576 592 SLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKM 629 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~ 629 (641)
.+++|++.. +...++.+...+.+
T Consensus 73 -------------l~l~P~~~~--~~~n~~~~~~~~~~ 95 (104)
T 2v5f_A 73 -------------LELDPEHQR--ANGNLKYFEYIMAK 95 (104)
T ss_dssp -------------HHHCTTCHH--HHHHHHHHHHHHHH
T ss_pred -------------HhcCCCCHH--HHhhHHHHHHHHHh
Confidence 788999999 87777765555443
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.27 E-value=0.0011 Score=66.91 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 522 LWGALLSACSTHSNSELGKIVAQHLME-----LEPRDP---GPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 522 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
+++.+..+|...|++++|+.+++++++ +.|++| ..++.|+.+|..+|++++|..+++++.+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 566667777777777777777777764 345555 4688899999999999999999999864
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.26 E-value=0.00033 Score=54.24 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=58.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh
Q 040576 494 MVDLLGRAGLMRDSEELVSKL-PMEA-GPA-LWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKW 570 (641)
Q Consensus 494 li~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 570 (641)
....+.+.|++++|++.+++. ...| +.. .|..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677788888888888876 2233 456 77888888889999999999999999999998876632 445
Q ss_pred HHHHHHHHHh
Q 040576 571 DEVENLRRIM 580 (641)
Q Consensus 571 ~~A~~~~~~m 580 (641)
.+|...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5666666555
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.21 E-value=0.0016 Score=50.47 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=39.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 416 NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 416 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
+...|..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455666666666666666666666666664322 344566666666666666666666666654
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.17 E-value=0.0041 Score=60.02 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 518 AGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
.++..+..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45566666666666668888888888888888753 45667778888888888888888877743
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.14 E-value=0.033 Score=44.20 Aligned_cols=141 Identities=8% Similarity=0.058 Sum_probs=105.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHH
Q 040576 427 YGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRD 506 (641)
Q Consensus 427 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 506 (641)
+.-.|..++..++..+.... .+..-|+.+|--....-+-+-..++++.+-+.+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 44568888888888887763 25556777776666667777777777776552222 24666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 040576 507 SEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELE 586 (641)
Q Consensus 507 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 586 (641)
....+-.+. .+...+...+......|.-++-..++..++.-++.+|+.+..++.+|.+.|+..+|.+++.++-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666664 345556667788889999999999999887777888999999999999999999999999999999976
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.09 E-value=0.018 Score=55.55 Aligned_cols=142 Identities=10% Similarity=-0.033 Sum_probs=91.2
Q ss_pred CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---hc-----cHHHHHHHHHHhHH
Q 040576 415 KNVVSWNSMIMGYG--MHG---QGEKALEMFMEMEKRGPTPN-DATFICVLSACTH---AG-----MVLEGWWYFDLMQR 480 (641)
Q Consensus 415 ~~~~~~~~li~~~~--~~~---~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~---~g-----~~~~a~~~~~~~~~ 480 (641)
.+..+|...+.+.. ..+ ...+|..+|++..+. .|+ ...+..+..++.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35566666655432 223 246788888888875 555 3344443333321 01 11111122222211
Q ss_pred hhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 040576 481 IYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKL-PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVL 559 (641)
Q Consensus 481 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 559 (641)
....+.+..+|..+...+...|++++|+..++++ ...|+...|..+...+...|++++|.+.+++++.++|..+ +|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYW 348 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHH
Confidence 1122445778888877777789999999999987 3458888888888889999999999999999999999865 4433
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.02 E-value=0.0035 Score=63.06 Aligned_cols=67 Identities=9% Similarity=-0.011 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC
Q 040576 489 EHYGCMVDLLGRAGLMRDSEELVSKL---------PMEAGP-ALWGALLSACSTHSNSELGKIVAQHLME-----LEPRD 553 (641)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~ 553 (641)
.+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+.+++++++ ++|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44555555555555555555555543 123332 2566677777777777777777777765 45666
Q ss_pred Cc
Q 040576 554 PG 555 (641)
Q Consensus 554 ~~ 555 (641)
|.
T Consensus 421 p~ 422 (433)
T 3qww_A 421 PY 422 (433)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.99 E-value=0.0038 Score=49.70 Aligned_cols=86 Identities=9% Similarity=0.028 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceE
Q 040576 518 AGPALWGALLSACSTHSNSEL---GKIVAQHLMELE-P-RDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSS 592 (641)
Q Consensus 518 ~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 592 (641)
++..+--.+.+++.+..+... ++.+++.+.+.+ | ......+.|+-++.+.|++++|++.++.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l------------ 100 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL------------ 100 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------
Confidence 666666667777777665544 777777777765 4 34567788888888999999999988888
Q ss_pred EEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHh
Q 040576 593 LVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKM 629 (641)
Q Consensus 593 ~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~ 629 (641)
.+.+|++.. +..+...+..++.+
T Consensus 101 ------------L~~eP~n~Q--A~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 101 ------------LQTEPQNNQ--AKELERLIDKAMKK 123 (126)
T ss_dssp ------------HHHCTTCHH--HHHHHHHHHHHHHH
T ss_pred ------------HHhCCCCHH--HHHHHHHHHHHHHh
Confidence 778888888 77777777776654
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.99 E-value=0.024 Score=62.76 Aligned_cols=153 Identities=12% Similarity=0.039 Sum_probs=93.3
Q ss_pred HHHhCCChHHHHH-HHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHh
Q 040576 232 GYVKNREVGFARE-LFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDR 310 (641)
Q Consensus 232 ~~~~~g~~~~A~~-~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 310 (641)
.....+++++|.+ ++..+. +......++..+.+.|..+.|.++.+.. ..-.......|++++|.++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHh
Confidence 3445677777766 443321 1222356666667777777777665321 1123445667888888887766
Q ss_pred cCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHH
Q 040576 311 MCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLST 390 (641)
Q Consensus 311 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 390 (641)
+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+.....|. ++
T Consensus 678 ~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~ 740 (814)
T 3mkq_A 678 ES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FN 740 (814)
T ss_dssp CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HH
T ss_pred hC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hH
Confidence 53 456788888888888888888888887744 44455555556777666665555555441 23
Q ss_pred HHHHHHHhcCCHHHHHHHHhh
Q 040576 391 SLLTMYAKCGVMDLARNVFDN 411 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~ 411 (641)
....+|.+.|++++|.+++.+
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 334455666777776666544
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.97 E-value=0.0058 Score=61.58 Aligned_cols=96 Identities=4% Similarity=-0.154 Sum_probs=53.5
Q ss_pred HHhhccHHHHHHHHHHhHHhh--CCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 040576 462 CTHAGMVLEGWWYFDLMQRIY--KIEPK----VEHYGCMVDLLGRAGLMRDSEELVSKL---------PMEAGP-ALWGA 525 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~~ 525 (641)
+.+.|++++|...+++..+.. -+.|+ ..+++.++.+|...|++++|+.++++. +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334455555555555554311 11111 344555666666666666666555543 123332 35666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCchH
Q 040576 526 LLSACSTHSNSELGKIVAQHLME-----LEPRDPGPY 557 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 557 (641)
|...|...|++++|+.+++++++ ++|++|.+-
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 77777778888888887777765 457776443
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.69 E-value=0.0054 Score=56.67 Aligned_cols=83 Identities=10% Similarity=0.129 Sum_probs=67.2
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CChHH
Q 040576 504 MRDSEELVSKL-PMEAG---PALWGALLSACST-----HSNSELGKIVAQHLMELEPRD-PGPYVLLSNIYASE-GKWDE 572 (641)
Q Consensus 504 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 572 (641)
..+|...+++. ...|+ ...|..+...|.. -|+.++|.+.|+++++++|+. ..++..++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666666665 34566 4577777777877 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHhhhCCCc
Q 040576 573 VENLRRIMKEKELE 586 (641)
Q Consensus 573 A~~~~~~m~~~~~~ 586 (641)
|.+.+++.....+.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999776543
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.59 E-value=7.5e-05 Score=73.26 Aligned_cols=259 Identities=11% Similarity=0.089 Sum_probs=138.7
Q ss_pred CcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCeeHHHHHHHHH
Q 040576 156 NHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGP--VWDLVTWNSMIDGY 233 (641)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~ 233 (641)
....|..|.++....+.+.+|.+-| ++ .-|+..|..+|....+.|.+++-.+.+.-.. .+++..=+.|+-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---Ik---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---Hh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4456777877777777777766543 12 2355667778888888888888877776422 34555567788888
Q ss_pred HhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCC
Q 040576 234 VKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCM 313 (641)
Q Consensus 234 ~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 313 (641)
++.++..+-.+++ ..||..-...+.+-|...|.++.|.-+|..+..- ..|...+.+.|++..|.+.-++ .
T Consensus 127 Ak~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~-----akLAstLV~L~~yq~AVdaArK--A 196 (624)
T 3lvg_A 127 AKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF-----GRLASTLVHLGEYQAAVDGARK--A 196 (624)
T ss_dssp HTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC-----TTTSSSSSSCSGGGSSTTTTTT--C
T ss_pred HhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH-----HHHHHHHHHHHHHHHHHHHHHh--c
Confidence 8887765543332 3467767777777888888888877777665421 1111122222333322221111 2
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 040576 314 RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLL 393 (641)
Q Consensus 314 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 393 (641)
.++.+|-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|.+++.+.+++.-.... .....+|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 3455666666666666665554333222221 111 11223344555555555555555444221 23455566666
Q ss_pred HHHHhcCCHHHHHHHHhhcCC-----------CChhHHHHHHHHHHHcCChHHHH
Q 040576 394 TMYAKCGVMDLARNVFDNMTE-----------KNVVSWNSMIMGYGMHGQGEKAL 437 (641)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~A~ 437 (641)
-.|++- +.++..+.++.... .....|.-++-.|..-.++|.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 566553 23333333322211 23345666666666666666554
No 225
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.57 E-value=0.048 Score=44.09 Aligned_cols=88 Identities=8% Similarity=0.011 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceE
Q 040576 517 EAGPALWGALLSACSTHSN---SELGKIVAQHLMELEPR-DPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSS 592 (641)
Q Consensus 517 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 592 (641)
.|+..+--.+.+++.+..+ ..+++.+++.+.+..|. .....+.|+-++.+.|++++|+++.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l------------ 103 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL------------ 103 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH------------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH------------
Confidence 5777777777778777664 56788899999888774 4567888999999999999999999998
Q ss_pred EEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhh
Q 040576 593 LVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMC 630 (641)
Q Consensus 593 ~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~ 630 (641)
.+.+|+|.. +..+...+..++.+-
T Consensus 104 ------------L~~eP~n~Q--A~~Lk~~Ie~~i~kd 127 (144)
T 1y8m_A 104 ------------FEHERNNKQ--VGALKSMVEDKIQKE 127 (144)
T ss_dssp ------------HHTCCCCHH--HHHHHHHHHHHHHHT
T ss_pred ------------HhcCCCcHH--HHHHHHHHHHHHHHh
Confidence 788999999 888877777777543
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.49 E-value=0.0024 Score=62.97 Aligned_cols=376 Identities=11% Similarity=0.081 Sum_probs=202.3
Q ss_pred ChHHHHHhhhcCCCCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHH
Q 040576 105 SVSLSVLFFDGIQEPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIV 184 (641)
Q Consensus 105 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 184 (641)
+++.|.++-++...| ..|..|..+....|.+.+|++.|- + .-|...|..++.++.+.|.+++-...+.-.+
T Consensus 40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyI---k----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYI---K----ADDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSC---C----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred ccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHH---h----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344444444444333 457778888888888888877764 1 2366678888888888888888877776655
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhC---------------
Q 040576 185 KCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFM--------------- 249 (641)
Q Consensus 185 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------------- 249 (641)
+.. .+..+-+.|+-+|++.|++.+-.+.+ ..+|..-...+.+-|...|.++.|.-+|..+
T Consensus 111 k~~--ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 111 KKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp TTC--CSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred HHh--cccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 543 34455567888888888766544332 2344444555666666666666666666555
Q ss_pred ---------CCCCchhHHHHHHHHhcCCChHHHHH------------------------------HHhhcC---CCCchH
Q 040576 250 ---------PERDIFTWNSMISGYVDVGDMEAANG------------------------------LFDLMP---FRDVVS 287 (641)
Q Consensus 250 ---------~~~~~~~~~~ll~~~~~~g~~~~a~~------------------------------~~~~~~---~~~~~~ 287 (641)
...++.||-.+-.+|...+.+..|.- +++... +.....
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGm 265 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 265 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH
Confidence 11356677777777777766554432 222221 112456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC-----------CCcchHHHHHHHHHHcCChHHHHHHH-------------HHHH
Q 040576 288 WNCMIDGYAKIGNVTSARNCFDRMCM-----------RNVVSWNILLALYVRCKDYCECLRLF-------------DRMI 343 (641)
Q Consensus 288 ~~~li~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~-------------~~m~ 343 (641)
++-|.-.|+|- +.++..+.++..-. .....|.-++-.|.+-.+++.|.... ++..
T Consensus 266 FTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii 344 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 344 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTG
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHH
Confidence 77777777775 44554444443311 23457889999999989888775321 1111
Q ss_pred HCCCCCCHHHHHHHHHHHHc---------------cCCHHHHHHHHHHHHHc----------CCCCchhHHHHHHHHHHh
Q 040576 344 RGDAKPNEASLMSVLTACAN---------------MGVIDIGQWIHSYIQKC----------RIKPDVLLSTSLLTMYAK 398 (641)
Q Consensus 344 ~~g~~p~~~~~~~ll~~~~~---------------~g~~~~a~~~~~~~~~~----------~~~~~~~~~~~li~~~~~ 398 (641)
.. ..|...|-..+..|.. .=+...+.+++...-.. .-..+..+-.++-+.|..
T Consensus 345 ~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 345 TK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp GG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred HH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 10 1233333333333332 22222233332221100 001234445566677777
Q ss_pred cCCHHHHHHHHhhcCC------------CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 040576 399 CGVMDLARNVFDNMTE------------KNVVSWNSM-IMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHA 465 (641)
Q Consensus 399 ~g~~~~A~~~~~~~~~------------~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 465 (641)
..+++.-+.-.+.-.. .+..-|..+ ...|.++++|++++.+.++ . ..|.-.|......
T Consensus 423 EEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---D------klykDAietAa~S 493 (624)
T 3lvg_A 423 EEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---D------SLYKDAMQYASES 493 (624)
T ss_dssp TTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---T------CCTTGGGTTTTTC
T ss_pred hhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---c------ccHHHHHHHHHHc
Confidence 7776655544433222 222333333 3345667777777665432 0 1122233344455
Q ss_pred ccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHH
Q 040576 466 GMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEEL 510 (641)
Q Consensus 466 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 510 (641)
|+.+-+.++++-..+ .| +.+.|.+.+-.|...=+++-++++
T Consensus 494 ~~~elaeeLL~yFv~-~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 494 KDTELAEELLQWFLQ-EE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CCTTHHHHHHHHHHH-HC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHH-cC---chHHHHHHHHHHhhccChHHHHHH
Confidence 666666666666555 22 233444444444455555666555
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.39 E-value=0.14 Score=56.50 Aligned_cols=155 Identities=11% Similarity=0.056 Sum_probs=91.1
Q ss_pred HHHHcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 040576 325 LYVRCKDYCECLR-LFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMD 403 (641)
Q Consensus 325 ~~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 403 (641)
.....+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+. .. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHH
Confidence 3445677777765 44211 1112225556666677777776655421 10 1123456778888
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhC
Q 040576 404 LARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYK 483 (641)
Q Consensus 404 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 483 (641)
.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+.... .|
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~-~~ 737 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET-TG 737 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH-cC
Confidence 8888877663 557888888888888888888888887753 23344444446666655554444433 11
Q ss_pred CCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 040576 484 IEPKVEHYGCMVDLLGRAGLMRDSEELVSKLP 515 (641)
Q Consensus 484 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 515 (641)
.++....+|.+.|++++|++++.++.
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 12333344556666666666666553
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.34 E-value=0.026 Score=44.98 Aligned_cols=90 Identities=8% Similarity=0.003 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCce
Q 040576 516 MEAGPALWGALLSACSTHSN---SELGKIVAQHLMELEPR-DPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGS 591 (641)
Q Consensus 516 ~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 591 (641)
..|++.+--.+.+++.+..+ ..+++.+++.+.+.+|. ....++.|+-++.+.|++++|++..+.+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l----------- 104 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL----------- 104 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH-----------
Confidence 35677776667777777664 56788899999888874 4668889999999999999999999998
Q ss_pred EEEEeeeeecccccccCCCCchhhHHHHHHHHHHHHHhhh
Q 040576 592 SLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQMKMCR 631 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~~~~~ 631 (641)
.+.+|+|.. +..+...+..++.+-+
T Consensus 105 -------------L~~eP~N~Q--A~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 105 -------------FEHERNNKQ--VGALKSMVEDKIQKEE 129 (134)
T ss_dssp -------------HTTCTTCHH--HHHHHHHHHHHHHHHH
T ss_pred -------------HhhCCCCHH--HHHHHHHHHHHHHhhc
Confidence 788999999 8888888887776543
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.34 E-value=0.022 Score=44.22 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 040576 492 GCMVDLLGRAGLMRDSEELVSKL-----P----MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLS 561 (641)
Q Consensus 492 ~~li~~~~~~g~~~~A~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 561 (641)
..++..+.+.|++..|...|+.. + ..+...++..|..++.+.|+++.|...+++++++.|+++.+...+.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 34444555555555555554443 0 1234567788888999999999999999999999999876655554
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.96 E-value=0.023 Score=47.00 Aligned_cols=90 Identities=14% Similarity=-0.048 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHH
Q 040576 467 MVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAG---LMRDSEELVSKL-PME-A--GPALWGALLSACSTHSNSELG 539 (641)
Q Consensus 467 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~a 539 (641)
....+.+.|.+... .+. ++..+.-.+.-++++.+ +.++++.++++. ... | ....+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~-~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHH-TTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 34444555555444 222 45555555666666666 455666666655 112 3 234556677778999999999
Q ss_pred HHHHHHHHhcCCCCCchHH
Q 040576 540 KIVAQHLMELEPRDPGPYV 558 (641)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~ 558 (641)
...++.+++.+|+|..+..
T Consensus 91 ~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 9999999999998864433
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.29 Score=41.55 Aligned_cols=129 Identities=10% Similarity=0.090 Sum_probs=76.9
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHH
Q 040576 394 TMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWW 473 (641)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 473 (641)
+....+|+++.|.++.+.+ .+...|..|.......|+++-|...|.+..+ |..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677888887777665 4566788888888888888888888777643 2334444555566655554
Q ss_pred HHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040576 474 YFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHL 546 (641)
Q Consensus 474 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 546 (641)
+-+.... .| -++.-...+.-.|+++++++++.+...-|... ......|..+.|.++.+.+
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 4444433 12 13333445566788888888877765222111 1223456666666666544
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.65 Score=39.41 Aligned_cols=101 Identities=10% Similarity=0.060 Sum_probs=54.0
Q ss_pred HHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040576 295 YAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIH 374 (641)
Q Consensus 295 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 374 (641)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+....+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666665554 3445666666666666666666666666543 334444455556655555444
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 040576 375 SYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNM 412 (641)
Q Consensus 375 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 412 (641)
+.....| -++.....+...|+++++.++|.+.
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4444433 1222333444455666655555444
No 233
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.74 E-value=0.077 Score=40.05 Aligned_cols=68 Identities=7% Similarity=-0.049 Sum_probs=47.3
Q ss_pred CchHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040576 486 PKVEHYGCMVDLLGRAGL---MRDSEELVSKL-PMEA-GPALWGALLSACSTHSNSELGKIVAQHLMELEPRD 553 (641)
Q Consensus 486 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 553 (641)
.+...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..++++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 456666667776654444 57788877776 2233 35566667777888888888888888888888873
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.37 E-value=3.3 Score=43.44 Aligned_cols=114 Identities=16% Similarity=0.032 Sum_probs=71.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHH
Q 040576 431 GQGEKALEMFMEMEKRGPTPNDATF----ICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRD 506 (641)
Q Consensus 431 ~~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 506 (641)
++.+.|...|......+ ..+.... ..+.......+...++...+..... ..++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 47899999998887543 2233322 2233333444534566666666544 22343334445555668899999
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 507 SEELVSKLPMEA-G-PALWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 507 A~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
|...|+.|+..+ + ....-=+..+....|+.++|..+|+.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999996432 2 22222344567788999999999999875
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.66 E-value=0.062 Score=49.70 Aligned_cols=82 Identities=11% Similarity=0.104 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhHHhhCCCCc---hHHHHHHHHHHhh-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCC
Q 040576 468 VLEGWWYFDLMQRIYKIEPK---VEHYGCMVDLLGR-----AGLMRDSEELVSKL-PMEAG--PALWGALLSACST-HSN 535 (641)
Q Consensus 468 ~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~-~g~ 535 (641)
...|...++++.+ +.|+ -..|..+...|.+ -|+.++|.+.|++. .+.|+ ...+......++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 4455555555555 4454 3356666666666 36677777776665 23342 4455555555555 367
Q ss_pred HHHHHHHHHHHHhcCCC
Q 040576 536 SELGKIVAQHLMELEPR 552 (641)
Q Consensus 536 ~~~a~~~~~~~~~~~p~ 552 (641)
.+++...+++++...|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77777777777776665
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.54 E-value=0.62 Score=36.98 Aligned_cols=96 Identities=14% Similarity=-0.080 Sum_probs=63.4
Q ss_pred HHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHHHHhhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcC
Q 040576 462 CTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVDLLGRAGLMRD---SEELVSKLP-ME-A--GPALWGALLSACSTHS 534 (641)
Q Consensus 462 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g 534 (641)
-........+.+.|..... .+. ++..+--.+..++++..+..+ ++.++++.- .. | .......|.-++.+.|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 3334455555666665554 233 566666666777777776655 777777762 22 3 1234455667789999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHH
Q 040576 535 NSELGKIVAQHLMELEPRDPGPYVL 559 (641)
Q Consensus 535 ~~~~a~~~~~~~~~~~p~~~~~~~~ 559 (641)
++++|...++.+++.+|+|..+...
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999998654443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.25 Score=52.77 Aligned_cols=53 Identities=13% Similarity=0.032 Sum_probs=50.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 529 ACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 529 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999999999999999999884
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.32 E-value=0.13 Score=41.91 Aligned_cols=48 Identities=8% Similarity=-0.071 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 534 SNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 534 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
+|+++|..+|+.++++...-+..|...+.--.++|+.+.|.+++.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 455555555555554433333344444444445555555555555553
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.32 E-value=2.5 Score=33.71 Aligned_cols=140 Identities=9% Similarity=-0.051 Sum_probs=80.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 040576 327 VRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLAR 406 (641)
Q Consensus 327 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 406 (641)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+ -.|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHH
Confidence 3345566666666555542 2334444444433333333333333333222 1121 2344555555
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCC
Q 040576 407 NVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIE 485 (641)
Q Consensus 407 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 485 (641)
..+-.+.. +......-+..+..+|+-|+-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+ .|++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK-KGEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hhhH
Confidence 54444432 3344556677777888888888888875442 467777777888888888888888888888877 5653
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.08 E-value=1.4 Score=36.07 Aligned_cols=56 Identities=9% Similarity=-0.076 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 040576 502 GLMRDSEELVSKLP--MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPY 557 (641)
Q Consensus 502 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 557 (641)
++.++|.++|+.+. .+.=...|.....--.++|+...|..++.+++.+.|.+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 45555555555441 011155566666666778888888888888888877754333
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.98 E-value=1.3 Score=36.86 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 040576 487 KVEHYGCMVDLLGRAGLMRDSEELVSKLPM 516 (641)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 516 (641)
+.+.--.+..+|.+.|++++|+.+++.+|.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 344444577778888888888888888753
No 242
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.81 E-value=7.9 Score=33.88 Aligned_cols=110 Identities=14% Similarity=0.102 Sum_probs=42.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCCh
Q 040576 191 DLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDM 270 (641)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~ 270 (641)
+..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.+..+..-.+.+.+..+|...-...+.++.+.|+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 33333344444444443222222223333334444444444444444433222233333334444444444444444443
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHhcCC
Q 040576 271 EAANGLFDLMPFRDVVSWNCMIDGYAKIGN 300 (641)
Q Consensus 271 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 300 (641)
+....+.+.+..++..+....+.++.+.|.
T Consensus 112 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 112 RAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 333333333333444444444444444443
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.45 E-value=14 Score=36.12 Aligned_cols=162 Identities=7% Similarity=-0.069 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCC---chhHHHHHHHHHHhc-CCHHHHHHHHhhcCC---CChhHH---
Q 040576 352 ASLMSVLTACANMGVIDIGQWIHSYIQKC-RIKP---DVLLSTSLLTMYAKC-GVMDLARNVFDNMTE---KNVVSW--- 420 (641)
Q Consensus 352 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~---~~~~~~--- 420 (641)
.....+...|.+.|+.++...++...... +.-+ .......+++.+... +..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777766655431 1111 233455566666553 223333333333221 111222
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhhccHHHHHHHHHHhHHhh-CCCCchHHH
Q 040576 421 ---NSMIMGYGMHGQGEKALEMFMEMEKR--GPTPN---DATFICVLSACTHAGMVLEGWWYFDLMQRIY-KIEPKVEHY 491 (641)
Q Consensus 421 ---~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~ 491 (641)
..++..|...|++.+|..++.++.+. ..... ...|..-+..|...+++.++...+....... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 24566777777777777777776653 11111 1133444555666777777777776665422 121222211
Q ss_pred ----HHHHHHHh-hcCCHHHHHHHHHh
Q 040576 492 ----GCMVDLLG-RAGLMRDSEELVSK 513 (641)
Q Consensus 492 ----~~li~~~~-~~g~~~~A~~~~~~ 513 (641)
.+-+..+. ..+++.+|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 12223344 56777777666654
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.72 E-value=13 Score=34.83 Aligned_cols=168 Identities=8% Similarity=-0.037 Sum_probs=97.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHh
Q 040576 389 STSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEM----FMEMEKRGPTPNDATFICVLSACTH 464 (641)
Q Consensus 389 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 464 (641)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|.++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34445557777888888877644 23445667776666654 4445556888888877777776654
Q ss_pred hccHH-HHHHHHHHhHHh---hC--CCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 040576 465 AGMVL-EGWWYFDLMQRI---YK--IEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTH---SN 535 (641)
Q Consensus 465 ~g~~~-~a~~~~~~~~~~---~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 535 (641)
-..-+ .-.++.+.+.+- .| -.-++.....+...|.+.|++.+|...|---. ..++..+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCCC
Confidence 22111 112333333320 12 12356777888899999999999998776321 12355565555554443 44
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 536 SELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 536 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
..++-... ...+--|.-.|+...|..+++....
T Consensus 184 ~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33322211 1122235667889999888887653
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.67 E-value=5.4 Score=36.25 Aligned_cols=122 Identities=15% Similarity=0.083 Sum_probs=76.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCch----HHHHHHHHHHhhc
Q 040576 426 GYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV----EHYGCMVDLLGRA 501 (641)
Q Consensus 426 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~ 501 (641)
...+.|+.++|+.....-++..+. |...=..++..+|-.|+++.|.+-++...+ +.|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 455678888888888877776422 555666778888888999999888888876 44553 234444432
Q ss_pred CCHHHHH-HHHHhC--C--CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 040576 502 GLMRDSE-ELVSKL--P--MEAGPALWGALLSA--CSTHSNSELGKIVAQHLMELEPRDPGPYV 558 (641)
Q Consensus 502 g~~~~A~-~~~~~~--~--~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 558 (641)
+... ++|..- | ......-...++.+ ....|+.++|..+-..+.+.-|..+....
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 1111 233321 1 12223333455555 34568888888888888888877665443
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.84 E-value=31 Score=37.85 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCCchhHHHHHH
Q 040576 124 CNTIMKSFLMLNDPFGALSFYY 145 (641)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~~~~ 145 (641)
|..+++.+.+.++.+.+.++|.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~ 254 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFK 254 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444555555555555555555
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.72 E-value=1.9 Score=35.94 Aligned_cols=122 Identities=12% Similarity=0.044 Sum_probs=69.0
Q ss_pred CCCCCCHH--HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc-------hHHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 040576 446 RGPTPNDA--TFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK-------VEHYGCMVDLLGRAGLMRDSEELVSKL-- 514 (641)
Q Consensus 446 ~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~-- 514 (641)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+ ..++..+.+++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35555443 3445567778889999998888876653333333 235566788888899998888888874
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 515 -----PMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 515 -----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
+..++. ..++. . ...... -... +.+.+.-+.++.+|.+.|++++|+.+++.+.
T Consensus 92 ~~k~l~k~~s~--~~~~~-~--~ss~p~--------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG-N--SASTPQ--------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCc--ccccc-c--cCCCcc--------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111111 11110 0 000000 0011 2234567789999999999999999999874
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.94 E-value=23 Score=35.35 Aligned_cols=184 Identities=10% Similarity=0.064 Sum_probs=108.3
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH----HHHHhcC
Q 040576 330 KDYCECLRLFDRMIR-----GDAKPNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLL----TMYAKCG 400 (641)
Q Consensus 330 g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g 400 (641)
|++++|++.+..+.+ ............++..|...|+++...+.+..+.+..-.. ......++ .......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 455556555544432 1233345556666666777777776666555554332111 11112222 2222222
Q ss_pred C--HHHHHHHHhhcCC---C-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHH
Q 040576 401 V--MDLARNVFDNMTE---K-------NVVSWNSMIMGYGMHGQGEKALEMFMEMEKR--GPTPN---DATFICVLSACT 463 (641)
Q Consensus 401 ~--~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~~ 463 (641)
. .+.-..+.+.... . .......|...|...|++.+|..++..+... |.... ...+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2 2222333333331 1 1123456788899999999999999998653 32222 235666778899
Q ss_pred hhccHHHHHHHHHHhHHh-hCCC--Cc--hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 464 HAGMVLEGWWYFDLMQRI-YKIE--PK--VEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 464 ~~g~~~~a~~~~~~~~~~-~~~~--p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
..+++..|..++.++... .... |+ ...|...+..+...+++.+|...|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999987531 1222 22 356778888899999999998887765
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.87 E-value=20 Score=34.99 Aligned_cols=126 Identities=9% Similarity=-0.028 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHH---
Q 040576 388 LSTSLLTMYAKCGVMDLARNVFDNMTE--------KNVVSWNSMIMGYGMHGQ-GEKALEMFMEMEKRGPTPNDATF--- 455 (641)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~--- 455 (641)
....|...|.+.|+.++..+++..... +.......++..+....+ .+.-.++..+..+..-. +..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 455677788888888888888777653 122344555655554322 23333333333221000 11122
Q ss_pred ---HHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 456 ---ICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK----VEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 456 ---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
..++..|...|++.+|.+++..+.+...-..+ .++|..-+..|...|++.++...+.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 13555566666666666666666553221111 233444455555666666555555443
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.81 E-value=1.2 Score=43.82 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCcccC
Q 040576 523 WGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE-----KELEKAV 589 (641)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 589 (641)
...++..+...|+++++...++.+...+|-+...|..++.+|.+.|+..+|++.|++..+ -|+.|.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 344666777888999999888988999998888899999999999999999988888644 3555544
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.64 E-value=24 Score=35.32 Aligned_cols=184 Identities=9% Similarity=-0.056 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHH----HHcCC
Q 040576 365 GVIDIGQWIHSYIQKC-----RIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKN---VVSWNSMIMGY----GMHGQ 432 (641)
Q Consensus 365 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~----~~~~~ 432 (641)
|+++.|.+.+-.+.+. +...+......++..|...|+++...+.+..+.+.. ..+...++..+ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677777666555542 344567778889999999999999877776655321 12233344332 23333
Q ss_pred hHHHH--HHHHHHHH--CC-CCCC---HHHHHHHHHHHHhhccHHHHHHHHHHhHHhh-CCCCc---hHHHHHHHHHHhh
Q 040576 433 GEKAL--EMFMEMEK--RG-PTPN---DATFICVLSACTHAGMVLEGWWYFDLMQRIY-KIEPK---VEHYGCMVDLLGR 500 (641)
Q Consensus 433 ~~~A~--~~~~~m~~--~g-~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~---~~~~~~li~~~~~ 500 (641)
.+... .+.+.... .| +-.. ......|...+...|++.+|..++..+..+. +.... ...+..-++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 33221 12211111 11 1111 1223457778889999999999999986533 33222 4567778889999
Q ss_pred cCCHHHHHHHHHhCC-----CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040576 501 AGLMRDSEELVSKLP-----MEAGP----ALWGALLSACSTHSNSELGKIVAQHLME 548 (641)
Q Consensus 501 ~g~~~~A~~~~~~~~-----~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 548 (641)
.+++.+|..+++++. ..+.+ ..+...+..+...+++.+|-..|..+.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999888761 22222 2344555557777888888777776654
No 252
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.64 E-value=13 Score=32.10 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=31.0
Q ss_pred CCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCC
Q 040576 221 WDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGN 300 (641)
Q Consensus 221 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 300 (641)
+|...-...+.++.+.|..+..-.+.+.+..++...-...+.++.+.|+.+....+...+..++..+-...+.++.+.+.
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 33333333444444444433333333333334444444444444444443322333333333333333344444444333
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.87 E-value=4.6 Score=30.27 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 040576 432 QGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVD 496 (641)
Q Consensus 432 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 496 (641)
+.-+..+-++.+....+.|++......+.+|.+.+++..|.++|+.++.+.+-. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344566667777777889999999999999999999999999999998754433 456766654
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.60 E-value=6.2 Score=42.25 Aligned_cols=52 Identities=6% Similarity=-0.069 Sum_probs=42.6
Q ss_pred HHHhhccHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 040576 461 ACTHAGMVLEGWWYFDLMQRIYKIEPK-VEHYGCMVDLLGRAGLMRDSEELVSKLP 515 (641)
Q Consensus 461 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 515 (641)
-|...|+++-|+++-++... ..|+ ..+|..|..+|...|+++.|+-.++.+|
T Consensus 346 FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35667889999988888877 4454 7888899999999999999998888886
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.59 E-value=8.2 Score=28.72 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 366 VIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEK 445 (641)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 445 (641)
..++|..|-+.+...+. ...+--+-+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777777777777653 33333334456778899999999999999999999987755 467888888888888887
Q ss_pred CCCCCCHHHHH
Q 040576 446 RGPTPNDATFI 456 (641)
Q Consensus 446 ~g~~p~~~~~~ 456 (641)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 55555554
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.21 E-value=8.7 Score=28.64 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040576 366 VIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEMEK 445 (641)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 445 (641)
..++|..|-+.+...+. ...+--+-+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777777777777653 33333334456778899999999999999999999987755 467888888888878877
Q ss_pred CCCCCCHHHHH
Q 040576 446 RGPTPNDATFI 456 (641)
Q Consensus 446 ~g~~p~~~~~~ 456 (641)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 55555554
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.21 E-value=1.8 Score=39.34 Aligned_cols=50 Identities=6% Similarity=0.120 Sum_probs=26.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 531 STHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 531 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
.+.|+.++|+......++.+|.|...-..|...|+-.|+|+.|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555544
No 258
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.48 E-value=18 Score=31.52 Aligned_cols=147 Identities=10% Similarity=0.012 Sum_probs=84.2
Q ss_pred hcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHH
Q 040576 216 EDGPVWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGY 295 (641)
Q Consensus 216 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 295 (641)
+.+..+|...-...+..+.+.|..+..-.+.+.+..+|...-...+.++...++.+....+.+.+..++..+....+.++
T Consensus 26 ~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 26 KNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL 105 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33445555555566666666666544444555555566666566666666666655555555555566666666777777
Q ss_pred HhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 040576 296 AKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGV 366 (641)
Q Consensus 296 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 366 (641)
.+.+..+....+.+.+..++...-...+.++...|+.+ +...+.++.+ .++...-...+.++.+.+.
T Consensus 106 ~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 106 GQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 77776554444444445555555555566666666543 3444444443 3455555555666666655
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.24 E-value=25 Score=33.00 Aligned_cols=180 Identities=11% Similarity=0.091 Sum_probs=106.0
Q ss_pred HHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHH----
Q 040576 263 GYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRL---- 338 (641)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~---- 338 (641)
.....|++=+|.+ .|.++..-|.+.+++++|++++.. -...+.+.|++..|-++
T Consensus 22 ~~I~~G~yYEAhQ-----------~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQ-----------TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHH-----------HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHH-----------HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHH
Confidence 3344555555544 345677778888888888887664 23345667777666554
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 040576 339 FDRMIRGDAKPNEASLMSVLTACANMGV-----IDIGQWIHSYIQKCRI--KPDVLLSTSLLTMYAKCGVMDLARNVFDN 411 (641)
Q Consensus 339 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 411 (641)
++-..+.+++++......++..+..... .+-.......-.+.|- .-++.....+...|.+.|++.+|+..|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4555567888888888888877665332 1222233333333332 23677888888999999999999888763
Q ss_pred cCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 412 MTEKNVVSWNSMIMGYGMH---GQGEKALEMFMEMEKRGPTPNDATF-ICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 412 ~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
-...+...+..++--+... |...++ ..| ...+--|.-.|+...|..+|+...+
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~----------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTV----------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHH----------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchH----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3222344443333322222 222221 111 1122234456888888888887765
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.85 E-value=27 Score=33.06 Aligned_cols=167 Identities=13% Similarity=0.054 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHH
Q 040576 287 SWNCMIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLF----DRMIRGDAKPNEASLMSVLTACA 362 (641)
Q Consensus 287 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 362 (641)
.|.++..-|.+.+++++|++++.. -...+.+.|+...|-++. +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345666778888888888887654 233455667766655554 44455688888888877777776
Q ss_pred ccCCHH-HHHHHHHHH----HHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 040576 363 NMGVID-IGQWIHSYI----QKCRI--KPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEK 435 (641)
Q Consensus 363 ~~g~~~-~a~~~~~~~----~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 435 (641)
....-+ .-..+.+.+ .+.|- .-|......+...|.+.+++.+|+..|-.-.++.+..|..|+--+...+..
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~-- 183 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES-- 183 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC--
Confidence 655321 112233333 33332 236777788889999999999999888432222234454433332222211
Q ss_pred HHHHHHHHHHCCCCCCHHHH-HHHHHHHHhhccHHHHHHHHHHhHH
Q 040576 436 ALEMFMEMEKRGPTPNDATF-ICVLSACTHAGMVLEGWWYFDLMQR 480 (641)
Q Consensus 436 A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 480 (641)
-+...| ...+--|.-.++...|...++...+
T Consensus 184 --------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 --------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 111222 1223334556888888887766654
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.72 E-value=30 Score=32.73 Aligned_cols=165 Identities=13% Similarity=0.065 Sum_probs=95.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHHhhc
Q 040576 391 SLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMF----MEMEKRGPTPNDATFICVLSACTHAG 466 (641)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~g 466 (641)
++..=|.+.+++++|.+++.. -...+.+.|+...|.++- +-..+.++++|......++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 344456777888888777543 234455667766655544 44455677888877777777665443
Q ss_pred cHH-HHHHHHHHhHH---hhC--CCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040576 467 MVL-EGWWYFDLMQR---IYK--IEPKVEHYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGK 540 (641)
Q Consensus 467 ~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 540 (641)
.-+ .=..+.+++.+ +.| -.-++.....+...|.+.|++.+|...|= ....+.+..+..++.-+...+.
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~----- 182 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE----- 182 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-----
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-----
Confidence 211 11222333222 123 22346666778899999999999998884 3333444666666655444432
Q ss_pred HHHHHHHhcCCCCCchHHHH-HHHHHhcCChHHHHHHHHHhhh
Q 040576 541 IVAQHLMELEPRDPGPYVLL-SNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
|.....|..- +--|.-.++...|..+++...+
T Consensus 183 ----------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ----------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ----------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2222233322 3336778888888887766554
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.56 E-value=57 Score=35.83 Aligned_cols=255 Identities=9% Similarity=0.071 Sum_probs=133.9
Q ss_pred HHhcCCChHHHHHHHhhcCC---C-C--chHHHHHHHHHHhcCChHHHHHHHHhcCC-CC----------cchHHHHHHH
Q 040576 263 GYVDVGDMEAANGLFDLMPF---R-D--VVSWNCMIDGYAKIGNVTSARNCFDRMCM-RN----------VVSWNILLAL 325 (641)
Q Consensus 263 ~~~~~g~~~~a~~~~~~~~~---~-~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~----------~~~~~~li~~ 325 (641)
+....|+.++++.++..... . + +..-..+.-+...+|..+++..++..... .+ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45677888888888877664 1 2 22333444455666666667766655422 22 1112233333
Q ss_pred HHHcCC-hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH--HHHhcC
Q 040576 326 YVRCKD-YCECLRLFDRMIRGDAKPNEA--SLMSVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLT--MYAKCG 400 (641)
Q Consensus 326 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g 400 (641)
++-.|. -+++.+.+..+....- +... .-..+...+...|+-+....++..+.+.. +..+...++. ++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333343 2456666666665321 1111 11123333556678787788877776532 2233333333 334567
Q ss_pred CHHHHHHHHhhcCC-CChh-HHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 040576 401 VMDLARNVFDNMTE-KNVV-SWN---SMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYF 475 (641)
Q Consensus 401 ~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 475 (641)
+.+.+..+.+.+.. .+.. -|. ++..+|+..|+......++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 77777777666552 3332 232 34566778888766666888877641 212222222222444456666666666
Q ss_pred HHhHHhhCCCCchHHHHHHHHHHhhcCCH-HHHHHHHHhCCCCCCHHHHH
Q 040576 476 DLMQRIYKIEPKVEHYGCMVDLLGRAGLM-RDSEELVSKLPMEAGPALWG 524 (641)
Q Consensus 476 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~ 524 (641)
+.+.+ ...|.+..-..+.-+....|.. .+|++++..+...++..+-.
T Consensus 618 ~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq 665 (963)
T 4ady_A 618 QLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQ 665 (963)
T ss_dssp TTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHH
Confidence 65554 2345554444444444444443 67777777775455655443
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.27 E-value=17 Score=29.37 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=41.7
Q ss_pred CchHHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 040576 486 PKVEHYGCMVDLLGRAGLM---RDSEELVSKL-PMEA-G-PALWGALLSACSTHSNSELGKIVAQHLMELEPRDPG 555 (641)
Q Consensus 486 p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~~-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 555 (641)
|+..+--.+..++.+..+. .+++.++++. ...| + ....--|.-++.+.|++++|....+.+++.+|+|..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 4444444444455544432 3445555444 1122 2 234445666788889999999999999999998853
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.12 E-value=31 Score=39.45 Aligned_cols=143 Identities=11% Similarity=0.016 Sum_probs=89.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------------------
Q 040576 356 SVLTACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLARNVFDNMTEK-------------------- 415 (641)
Q Consensus 356 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------- 415 (641)
.++..+...+..+.+.++.... +.+....-.+..+|..+|++++|.+.|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455566666666665544322 234444445677888899999999999876420
Q ss_pred ------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHHhhccHHHHHHHHHHhHHhhCCC
Q 040576 416 ------NVVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPND--A--TFICVLSACTHAGMVLEGWWYFDLMQRIYKIE 485 (641)
Q Consensus 416 ------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 485 (641)
-..-|..++..+.+.|.++.++++-....+....-+. . .|..+..++...|++++|...+-.+.. . .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~--~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-T--P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-S--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-H--H
Confidence 0123566777888888888888877766654211121 1 466778888888888888887766654 2 2
Q ss_pred CchHHHHHHHHHHhhcCCHHH
Q 040576 486 PKVEHYGCMVDLLGRAGLMRD 506 (641)
Q Consensus 486 p~~~~~~~li~~~~~~g~~~~ 506 (641)
--......|+..++..|..++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhCCChhh
Confidence 234556666666666665443
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.09 E-value=7.3 Score=44.59 Aligned_cols=62 Identities=10% Similarity=-0.082 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040576 523 WGALLSACSTHSNSELGKIVAQHLMELEPRDPG-----PYVLLSNIYASEGKWDEVENLRRIMKEKE 584 (641)
Q Consensus 523 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 584 (641)
|.-++..+.+++.++.+.++.+.+++..+.+.. .|..+...+...|++++|...+-.+.+..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 444555556666666666666666654432221 35555666666666666666665554433
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.45 E-value=55 Score=34.19 Aligned_cols=239 Identities=13% Similarity=-0.024 Sum_probs=129.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 040576 330 KDYCECLRLFDRMIRGDAKPNEASLMSVL----TACANMGVIDIGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGVMDLA 405 (641)
Q Consensus 330 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 405 (641)
.+.+.|..++....+.+ ..+......+- ......+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 47899999998887543 23433332222 22334442445555555544432 3333344455555677999999
Q ss_pred HHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhh
Q 040576 406 RNVFDNMTEKN---VVSWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIY 482 (641)
Q Consensus 406 ~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 482 (641)
...|+.|.... ....-=+..++...|+.++|..+|.++... . +|..++.+ .+.|..-.. ...
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~~~~~--------~~~ 369 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGEEYEL--------KID 369 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTCCCCC--------CCC
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCCCCCC--------CCC
Confidence 99999998632 222223455777889999999999998742 2 34333322 223321000 000
Q ss_pred CCCCc-h---H--HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC
Q 040576 483 KIEPK-V---E--HYGCMVDLLGRAGLMRDSEELVSKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEP---RD 553 (641)
Q Consensus 483 ~~~p~-~---~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~ 553 (641)
...+. . . .-..-+..+...|...+|...+.......+......+.......|....++....+....+. .-
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~ 449 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERF 449 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHS
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhC
Confidence 01110 0 0 11123456778899999988777663234544444555556778888887766544322210 11
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 040576 554 PGPYVLLSNIYASEGKWDEVENLRRIMKEKELE 586 (641)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 586 (641)
|..|..++.-+.+.-.++.++-.---..|.+..
T Consensus 450 P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~ 482 (618)
T 1qsa_A 450 PLAYNDLFKRYTSGKEIPQSYAMAIARQESAWN 482 (618)
T ss_dssp CCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTC
T ss_pred CcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 334666666666665566544432223444443
No 267
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.23 E-value=11 Score=37.00 Aligned_cols=69 Identities=6% Similarity=0.014 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHH----hhCCCCchHH
Q 040576 421 NSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQR----IYKIEPKVEH 490 (641)
Q Consensus 421 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 490 (641)
..++..+...|++++|+..+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ +.|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445666777788888887777776653 23566777788888888888888887777544 3577777554
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.07 E-value=7 Score=31.04 Aligned_cols=62 Identities=11% Similarity=0.129 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 040576 433 GEKALEMFMEMEKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVD 496 (641)
Q Consensus 433 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 496 (641)
.-+..+-++.+....+.|++......+.+|.+.+++..|.++|+-++.+.| +....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 345566666777778999999999999999999999999999999987544 33556776664
No 269
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=78.76 E-value=31 Score=29.61 Aligned_cols=146 Identities=10% Similarity=0.004 Sum_probs=79.0
Q ss_pred CCCCCeeHHHHHHHHHHhCCChHHHHHHHhhCCCCCchhHHHHHHHHhcCCChHHHHHHHhhcCCCCchHHHHHHHHHHh
Q 040576 218 GPVWDLVTWNSMIDGYVKNREVGFARELFDFMPERDIFTWNSMISGYVDVGDMEAANGLFDLMPFRDVVSWNCMIDGYAK 297 (641)
Q Consensus 218 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 297 (641)
+..+|.......+.++.+.+..+....+.+.+..+|...-...+.++...|+.+....+...+..++..+....+.++.+
T Consensus 23 L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 23 LQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ 102 (201)
T ss_dssp TTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33444444445555555555544444444444555655555566666666665555555555556666666666777777
Q ss_pred cCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 040576 298 IGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGVI 367 (641)
Q Consensus 298 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 367 (641)
.+..+....+...+..++...-...+.++...++. ++...+..+.. .++...-...+.++...|..
T Consensus 103 ~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 103 IGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred hCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 66654444444444555555545555556555553 33444444443 24555555555566655553
No 270
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.21 E-value=26 Score=27.91 Aligned_cols=63 Identities=10% Similarity=-0.112 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHhhc---cHHHHHHHHHHhHHhhCCCC--chHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 040576 449 TPNDATFICVLSACTHAG---MVLEGWWYFDLMQRIYKIEP--KVEHYGCMVDLLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 449 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 514 (641)
.|+..|--.+..++.+.. +..+++.+++.+.+ .+ | ..+.+-.|.-++.+.|++++|.++.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445554444444444433 33455555555554 22 2 1223333444444444444444444443
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.94 E-value=20 Score=30.91 Aligned_cols=49 Identities=10% Similarity=0.037 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040576 536 SELGKIVAQHLME--LEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKE 584 (641)
Q Consensus 536 ~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 584 (641)
...+..+|..+.. ++...+..|...+..+...|++.+|.++++.-.+++
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4445555554443 233344455555555555555555555555554443
No 272
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=74.23 E-value=25 Score=26.37 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 040576 514 LPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLS 561 (641)
Q Consensus 514 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 561 (641)
+..-|++.+..+.+.+|++.+|+..|.++++-+.....+...+|..+.
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 346699999999999999999999999999988877655555676665
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.11 E-value=20 Score=35.63 Aligned_cols=57 Identities=12% Similarity=-0.028 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 040576 388 LSTSLLTMYAKCGVMDLARNVFDNMTE------KNVVSWNSMIMGYGMHGQGEKALEMFMEME 444 (641)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 444 (641)
+...+.+.|.+.|+++.|.+.|.++.. .-...+-..+..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334455566666666666666655542 112344455555555566666665555543
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=69.31 E-value=47 Score=30.03 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=11.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC
Q 040576 198 LIHMYSVCGEVLDARKVFEDGP 219 (641)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~~~ 219 (641)
.+...+..|+.+-..-+++.+.
T Consensus 42 ~L~~A~~~g~~~~v~~Ll~~g~ 63 (285)
T 1wdy_A 42 PLHNAVQMSREDIVELLLRHGA 63 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCC
Confidence 3444455566666665655543
No 275
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=68.22 E-value=91 Score=32.80 Aligned_cols=22 Identities=9% Similarity=-0.112 Sum_probs=16.7
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC
Q 040576 498 LGRAGLMRDSEELVSKLPMEAG 519 (641)
Q Consensus 498 ~~~~g~~~~A~~~~~~~~~~~~ 519 (641)
+...|++++|++.++++++-|.
T Consensus 548 ~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 3678889999999888854454
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.86 E-value=34 Score=31.03 Aligned_cols=86 Identities=8% Similarity=-0.043 Sum_probs=42.4
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcc---hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChh--HHHHHHH
Q 040576 126 TIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHY---TFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLF--VRNSLIH 200 (641)
Q Consensus 126 ~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~ 200 (641)
..+...++.|+.+-... +.+.|..++.. .-...+...+..|+.+ +++.+.+.|..++.. .....+.
T Consensus 7 ~~L~~A~~~g~~~~v~~-----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQ-----LLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHH-----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHHHHH-----HHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHH
Confidence 34445566677654433 34455544432 1123344445566654 444555667655432 1122334
Q ss_pred HHHhcCCHHHHHHHHhcCCC
Q 040576 201 MYSVCGEVLDARKVFEDGPV 220 (641)
Q Consensus 201 ~~~~~g~~~~A~~~~~~~~~ 220 (641)
..+..|+.+-+.-+++.+..
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~ 97 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGAD 97 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHcCCC
Confidence 44556777666666665443
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.54 E-value=36 Score=25.39 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=52.9
Q ss_pred cCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhh
Q 040576 169 GIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDF 248 (641)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 248 (641)
.....++|..|-+.+...|- ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++...+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34567888888888877653 22222223344667899999999988888888888877654 466777777666655
Q ss_pred C
Q 040576 249 M 249 (641)
Q Consensus 249 m 249 (641)
+
T Consensus 94 l 94 (115)
T 2uwj_G 94 L 94 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.42 E-value=11 Score=37.69 Aligned_cols=97 Identities=7% Similarity=-0.156 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHhHHhh-CCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHH---
Q 040576 454 TFICVLSACTHAGMVLEGWWYFDLMQRIY-KIEPKVEHYGCMVDLLGRAGLMRDSEELVSKLP----MEAGPALWGA--- 525 (641)
Q Consensus 454 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~--- 525 (641)
+...+..-+.+.|+++.|.+.+.++.... +..--...+...+..+...+++..+...++++. ..+++...+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45567778888888888888888887622 222225667777888888888888888877761 2233322211
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhcC
Q 040576 526 -LLSACSTHSNSELGKIVAQHLMELE 550 (641)
Q Consensus 526 -l~~~~~~~g~~~~a~~~~~~~~~~~ 550 (641)
-+..+...+++..|-..|-.+..-.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 1112445677777777776666543
No 279
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.96 E-value=37 Score=25.36 Aligned_cols=77 Identities=12% Similarity=-0.005 Sum_probs=52.0
Q ss_pred cCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCeeHHHHHHHHHHhCCChHHHHHHHhh
Q 040576 169 GIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEVLDARKVFEDGPVWDLVTWNSMIDGYVKNREVGFARELFDF 248 (641)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 248 (641)
.....++|..|-+.+...|- ...+--.-+..+...|++++|..+.+...-||...|-++-.. +.|..+++...+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 34567888888888877653 222222233446678999999999888888888888776543 55666666666555
Q ss_pred C
Q 040576 249 M 249 (641)
Q Consensus 249 m 249 (641)
+
T Consensus 95 l 95 (116)
T 2p58_C 95 L 95 (116)
T ss_dssp H
T ss_pred H
Confidence 4
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.16 E-value=41 Score=27.51 Aligned_cols=80 Identities=9% Similarity=0.064 Sum_probs=47.9
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 505 RDSEELVSKL-PMEAGPALWGALLSACSTHSNSELGKIVAQHLME--LEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 505 ~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
+.+...|..- ..+.|+.-....+.--....+ +..+|..+.. ++...+..|...+..+...|++++|.++++.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555444 233455444333333222333 5667766655 445566677888888888888888888888877
Q ss_pred hCCCcc
Q 040576 582 EKELEK 587 (641)
Q Consensus 582 ~~~~~~ 587 (641)
+++-+|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 665544
No 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=65.86 E-value=1.1e+02 Score=30.14 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=8.3
Q ss_pred HHhcCCHHHHHHHHhc
Q 040576 202 YSVCGEVLDARKVFED 217 (641)
Q Consensus 202 ~~~~g~~~~A~~~~~~ 217 (641)
.++.|+.+-...+++.
T Consensus 120 A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 120 AAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3445555555555554
No 282
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=64.81 E-value=83 Score=28.58 Aligned_cols=20 Identities=0% Similarity=-0.363 Sum_probs=8.3
Q ss_pred CCCCeeHHHHHHHHHHhCCC
Q 040576 219 PVWDLVTWNSMIDGYVKNRE 238 (641)
Q Consensus 219 ~~~~~~~~~~li~~~~~~g~ 238 (641)
..++...-...+.++.+.|.
T Consensus 138 ~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 138 FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp TCSCHHHHHHHHHHHHTC--
T ss_pred hCCCHHHHHHHHHHHHhcCC
Confidence 34444444444445554444
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.72 E-value=56 Score=28.67 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=8.9
Q ss_pred cCCCchhHHHHHHHHHHhCC
Q 040576 169 GIRSLREGKKVHARIVKCGF 188 (641)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~g~ 188 (641)
..|+.+..+.+++.+.+.|.
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHhcCC
Confidence 34444444444444444443
No 284
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.55 E-value=52 Score=26.20 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=41.1
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 040576 512 SKLPMEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLS 561 (641)
Q Consensus 512 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 561 (641)
-.+..-|++.+..+.+.+|++.+|+..|.++++-+.....+....|..+.
T Consensus 80 ~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 80 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34456799999999999999999999999999998877655555676665
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=63.72 E-value=1.5e+02 Score=31.17 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=44.7
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCH--HHHHHHHHHHH-hc---------------CCHHHHHHHHHHHHh-------cC
Q 040576 496 DLLGRAGLMRDSEELVSKLPMEAGP--ALWGALLSACS-TH---------------SNSELGKIVAQHLME-------LE 550 (641)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~l~~~~~-~~---------------g~~~~a~~~~~~~~~-------~~ 550 (641)
.-+...|++++|+.+|.-.. +.+. ...+.++.-.. .. +-...|..+.+.... ..
T Consensus 451 ~~ae~~G~~~dAi~LY~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAE-EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Confidence 34557788888888887775 2221 23343333322 11 112344444433211 12
Q ss_pred CCCCchHHHHHHH-----HHhcCChHHHHHHHHHh
Q 040576 551 PRDPGPYVLLSNI-----YASEGKWDEVENLRRIM 580 (641)
Q Consensus 551 p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m 580 (641)
+.+..++..|..+ +...|+|++|++.++++
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 2233345544333 47899999999999887
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.74 E-value=33 Score=31.58 Aligned_cols=50 Identities=22% Similarity=0.119 Sum_probs=21.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC-CeeHHHHHHHHHHhCCChHHHHHHHh
Q 040576 198 LIHMYSVCGEVLDARKVFEDGPVW-DLVTWNSMIDGYVKNREVGFARELFD 247 (641)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 247 (641)
.+...+..|+.+-+.-+++.+... +...-.+.+...+..|+.+-+.-+++
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 344444556666555555554332 21122233333444555544444443
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.67 E-value=53 Score=27.26 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=30.7
Q ss_pred HHHHHHHHHh--cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 040576 539 GKIVAQHLME--LEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEK 587 (641)
Q Consensus 539 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 587 (641)
+..+|..+.. ++...+..|...+..+...|++.+|.++++.-.+.+-+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4445555544 344555667777777777777777777777766655443
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=59.58 E-value=57 Score=29.90 Aligned_cols=12 Identities=8% Similarity=-0.045 Sum_probs=5.7
Q ss_pred CChHHHHHhhhc
Q 040576 104 SSVSLSVLFFDG 115 (641)
Q Consensus 104 ~~~~~A~~~~~~ 115 (641)
.+..+..+++..
T Consensus 10 ~~~~~v~~lL~~ 21 (285)
T 3kea_A 10 WKSKQLKSFLSS 21 (285)
T ss_dssp CCHHHHHHHHHS
T ss_pred cCHHHHHHHHHh
Confidence 444555555543
No 289
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=53.93 E-value=39 Score=21.51 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHhhcCCChHHHHHhhhc
Q 040576 73 FHQIHTQLLVSGLSQDSFAASRVLKKLCTSLSSVSLSVLFFDG 115 (641)
Q Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~ 115 (641)
+.+...+|...|+..+.-+...|+. .+.|+...|++++..
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~---~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQ---TKNYDIGAALDTIQY 49 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHH---HTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCccccHHHHHHH---HccCCHHHHHHHhhh
Confidence 4556678889999999999999987 788999999988753
No 290
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=53.85 E-value=69 Score=32.36 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=46.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 040576 526 LLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMK 581 (641)
Q Consensus 526 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 581 (641)
|+...+-...++.|...|.++..+.|++...|+.|+.+....|+.-+|.-.+-+..
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44445556678899999999999999999999999999999998888887776653
No 291
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=53.04 E-value=1.5e+02 Score=27.75 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=41.8
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040576 510 LVSKLPMEAGPA--LWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKE 582 (641)
Q Consensus 510 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 582 (641)
+|...+.+|... +...-+..+.+.+++..|..+.++++++.|... ..++|.+++..-..
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~ 255 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADS 255 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHT
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhc
Confidence 355556666644 456677778999999999999999999998521 34556777666543
No 292
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=52.64 E-value=80 Score=26.96 Aligned_cols=73 Identities=10% Similarity=0.041 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCCCCHH--HHHHH-----HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHHHH
Q 040576 504 MRDSEELVSKLPMEAGPA--LWGAL-----LSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVENL 576 (641)
Q Consensus 504 ~~~A~~~~~~~~~~~~~~--~~~~l-----~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 576 (641)
++.|+-+++.+...-+.. ....| +..|.+.|.+++|.+++++..+..+.+...-..|..+-.+..-+...++.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lqn 173 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQH 173 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHHH
Confidence 567777777775333321 22222 34588999999999999998888777776667777666666655555543
No 293
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=51.49 E-value=1.1e+02 Score=29.96 Aligned_cols=84 Identities=8% Similarity=0.124 Sum_probs=35.7
Q ss_pred HHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChHHHH
Q 040576 497 LLGRAGLMRDSEELVSKLP--MEAGPALWGALLSACSTHSNSELGKIVAQHLMELEPRDPGPYVLLSNIYASEGKWDEVE 574 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 574 (641)
..++.|+.+-+.-+++.-. ...+...+.. +......|+.+-...+++.-...+..+......+ ....+.| +.+..
T Consensus 317 ~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~-L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l-~~A~~~g-~~~~~ 393 (437)
T 1n11_A 317 VASHYGNIKLVKFLLQHQADVNAKTKLGYSP-LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL-AIAKRLG-YISVT 393 (437)
T ss_dssp HHHHSSCSHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHH-HHHHHTT-CHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHH-HHHHHcC-cHHHH
Confidence 3455677665555555321 1112111222 2333456777666555553222221121111111 1223344 45566
Q ss_pred HHHHHhhhC
Q 040576 575 NLRRIMKEK 583 (641)
Q Consensus 575 ~~~~~m~~~ 583 (641)
++++.....
T Consensus 394 ~~l~~~~~~ 402 (437)
T 1n11_A 394 DVLKVVTDE 402 (437)
T ss_dssp HHHHHHCCC
T ss_pred HHHHhcccc
Confidence 777666433
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.31 E-value=1.3e+02 Score=25.93 Aligned_cols=15 Identities=7% Similarity=-0.024 Sum_probs=7.2
Q ss_pred hcCCChHHHHHhhhc
Q 040576 101 TSLSSVSLSVLFFDG 115 (641)
Q Consensus 101 ~~~~~~~~A~~~~~~ 115 (641)
++.|+.+....+++.
T Consensus 17 ~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 17 TQYGIYERCRELVEA 31 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHc
Confidence 344555555555443
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.03 E-value=90 Score=27.77 Aligned_cols=88 Identities=11% Similarity=0.020 Sum_probs=45.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 040576 423 MIMGYGMHGQGEKALEMFMEMEKR--GPTP----NDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVEHYGCMVD 496 (641)
Q Consensus 423 li~~~~~~~~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 496 (641)
-++.+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+.+ . . .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H-T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H-h--cCCHHHHHHHHH
Confidence 355666777777777777665442 2221 1111222233222222333333333334 2 1 344555556677
Q ss_pred HHhhcCCHHHHHHHHHhC
Q 040576 497 LLGRAGLMRDSEELVSKL 514 (641)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~ 514 (641)
.+.+.|+.++|.++|=+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 788888888888877543
No 296
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=45.86 E-value=78 Score=26.20 Aligned_cols=71 Identities=7% Similarity=-0.043 Sum_probs=52.6
Q ss_pred chhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCCH
Q 040576 137 PFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKC--GFELDLFVRNSLIHMYSVCGEV 208 (641)
Q Consensus 137 ~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~ 208 (641)
...+++-+.+.+++.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 35566666657888899886643 44567777777888999999999988 7667777666677778777743
No 297
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=43.37 E-value=1.9e+02 Score=26.10 Aligned_cols=16 Identities=0% Similarity=-0.151 Sum_probs=5.9
Q ss_pred chhHHHHHHHHHHhcC
Q 040576 385 DVLLSTSLLTMYAKCG 400 (641)
Q Consensus 385 ~~~~~~~li~~~~~~g 400 (641)
+..+-...+.++...|
T Consensus 141 ~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 141 STNVRRATAFAISVIN 156 (280)
T ss_dssp CHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHhcC
Confidence 3333333344444443
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=42.27 E-value=1.3e+02 Score=25.72 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=42.1
Q ss_pred HHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHcCCC
Q 040576 320 NILLALYV---RCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGV-----IDIGQWIHSYIQKCRIK 383 (641)
Q Consensus 320 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~ 383 (641)
.-+|+++. +-.+.+.|+-.+-+|.+.| .|.-..-..++.+....|. +..|...++.....|.+
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33555654 4589999999999999999 7766666666666666653 33444555555555643
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.06 E-value=1e+02 Score=27.48 Aligned_cols=23 Identities=0% Similarity=-0.035 Sum_probs=17.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 040576 322 LLALYVRCKDYCECLRLFDRMIR 344 (641)
Q Consensus 322 li~~~~~~g~~~~A~~~~~~m~~ 344 (641)
-+..+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45677788888888888877654
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.94 E-value=48 Score=33.52 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC---HH---HHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040576 488 VEHYGCMVDLLGRAGLMRDSEELVSKLPMEAG---PA---LWG-ALLSACSTHSNSELGKIVAQHLMELEPRDP 554 (641)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~---~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 554 (641)
...++.+++.|...+.++.|..++.+...... .. .|. -++..+.-.+++.+|.+.+..+++..|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 45667777777888888888888877642211 11 111 223345667777777777777777776654
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.62 E-value=2e+02 Score=31.90 Aligned_cols=56 Identities=4% Similarity=-0.225 Sum_probs=31.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CC-C----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040576 493 CMVDLLGRAGLMRDSEELVSKLP--ME-A----------------------GPALWGALLSACSTHSNSELGKIVAQHLM 547 (641)
Q Consensus 493 ~li~~~~~~g~~~~A~~~~~~~~--~~-~----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 547 (641)
.+..+|...|++++|.+.|+++. .. + ...-|..++..+.+++-++-+..+.+.++
T Consensus 845 v~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI 924 (950)
T 4gq2_M 845 LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 924 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34556666666666666666652 00 0 01134445555666666666666666666
Q ss_pred h
Q 040576 548 E 548 (641)
Q Consensus 548 ~ 548 (641)
+
T Consensus 925 ~ 925 (950)
T 4gq2_M 925 A 925 (950)
T ss_dssp H
T ss_pred h
Confidence 5
No 302
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.27 E-value=93 Score=27.14 Aligned_cols=12 Identities=0% Similarity=0.069 Sum_probs=4.8
Q ss_pred cCCHHHHHHHHh
Q 040576 205 CGEVLDARKVFE 216 (641)
Q Consensus 205 ~g~~~~A~~~~~ 216 (641)
.|+.+-+..+++
T Consensus 54 ~~~~~~v~~Ll~ 65 (237)
T 3b7b_A 54 NNHLEAVKYLIK 65 (237)
T ss_dssp TTCHHHHHHHHT
T ss_pred hCCHHHHHHHHh
Confidence 344444433333
No 303
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.44 E-value=84 Score=22.12 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=43.8
Q ss_pred HHHhcCCCCCcchHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 040576 147 KMMAKFVEHNHYTFPLLGKVCAGIR-SLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEV 208 (641)
Q Consensus 147 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 208 (641)
.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 5667888776654 44556676654 5677889999998887667777777777777777643
No 304
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=39.75 E-value=2.3e+02 Score=26.25 Aligned_cols=102 Identities=7% Similarity=0.059 Sum_probs=45.4
Q ss_pred HHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 040576 373 IHSYIQKCRIKPDVL--LSTSLLTMYAKCGVMDLARNVFDNMT----EKNVVSWNSMIMGYGMHGQGEKALEMFMEMEKR 446 (641)
Q Consensus 373 ~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 446 (641)
+.+.+.+.|..++.. ...+.+...+..|..+.+..+++.-. ..|..-++.|..+ ++.|+.+ +.+.+.+.
T Consensus 221 i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~ 295 (337)
T 4g8k_A 221 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKR 295 (337)
T ss_dssp HHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTT
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHC
Confidence 444455555544321 11123344556777777766665321 1222223333333 3455543 33444556
Q ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc
Q 040576 447 GPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK 487 (641)
Q Consensus 447 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 487 (641)
|..+|..+ .+...++.|+.+ +.+.+.+ +|-.||
T Consensus 296 GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~-~GA~~d 328 (337)
T 4g8k_A 296 GASTDCGD---LVMTARRNYDHS----LVKVLLS-HGAKED 328 (337)
T ss_dssp SCSSTTCC---HHHHHHHTTCHH----HHHHHHH-TTCCC-
T ss_pred CCCCCCCC---HHHHHHHcCCHH----HHHHHHH-CcCCCC
Confidence 66666443 222223445543 3334444 555555
No 305
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=39.73 E-value=1.8e+02 Score=24.99 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCch
Q 040576 419 SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPN-DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV 488 (641)
Q Consensus 419 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 488 (641)
.|-..+..+ ..+...++.++|..|..+|+--. ..-|......+...|++.+|.++|+.-++ .+-.|-.
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P~~ 150 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRPYN 150 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccHH
Confidence 344444433 13446688888888888765544 34666777778888999999999988888 6667753
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.52 E-value=1.5e+02 Score=25.58 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC
Q 040576 198 LIHMYSVCGEVLDARKVFEDGP 219 (641)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~~~ 219 (641)
.+...++.|+.+-+.-+++.+.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 3444455566666555555543
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.46 E-value=79 Score=31.95 Aligned_cols=121 Identities=12% Similarity=0.001 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCc---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 040576 452 DATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPK---VEHYGCMVDLLGRAGLMRDSEELVSKL-PMEA-GPALWGAL 526 (641)
Q Consensus 452 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 526 (641)
...++.+++.|.+.+.+++|..+..+..--....++ ...+..++..+.-.+++.+|.+.+... ...| +.......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 346788899999999999999999987420011122 122334677788899999999988875 2122 22111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCChHHHHHHHHHh
Q 040576 527 LSACSTHSNSELGKIVAQHLMELEPRD-----------PGPYVLLSNIYASEGKWDEVENLRRIM 580 (641)
Q Consensus 527 ~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m 580 (641)
..++. -.-..+.+...-|.. -..|..|+.++ +.|++++....+++-
T Consensus 311 ~~a~K-------~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h 367 (523)
T 4b4t_S 311 QQSNK-------LHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKY 367 (523)
T ss_dssp HHHHH-------HHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHT
T ss_pred HHHHH-------HHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 11110 011222233333421 12477788775 678888776666543
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.22 E-value=2e+02 Score=24.92 Aligned_cols=17 Identities=6% Similarity=-0.033 Sum_probs=8.6
Q ss_pred HHhcCCHHHHHHHHhcC
Q 040576 202 YSVCGEVLDARKVFEDG 218 (641)
Q Consensus 202 ~~~~g~~~~A~~~~~~~ 218 (641)
.+..|+.+-...+++.+
T Consensus 86 A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHTTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 34455555555555443
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.94 E-value=1.5e+02 Score=23.37 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHH
Q 040576 389 STSLLTMYAKCGVMDLARNVFDNMTEKNV---VSWNSMIMGYGMHGQ--GEKALEMFMEMEKRGPTPNDA 453 (641)
Q Consensus 389 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ 453 (641)
...++.=|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 34567777788888888888888875522 233444445544332 355677777777776554433
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.59 E-value=98 Score=24.95 Aligned_cols=61 Identities=5% Similarity=-0.048 Sum_probs=43.0
Q ss_pred HHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 040576 147 KMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEV 208 (641)
Q Consensus 147 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 208 (641)
.|++.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 577788877665433 3455555666778999999998887667777766677777777643
No 311
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.77 E-value=1.2e+02 Score=23.87 Aligned_cols=64 Identities=9% Similarity=0.331 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 040576 288 WNCMIDGYAKIGNVTSARNCFDRMCMRNV---VSWNILLALYVRCKD--YCECLRLFDRMIRGDAKPNE 351 (641)
Q Consensus 288 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 351 (641)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34566667777777777777777754421 223333344444322 34566677777666654443
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.13 E-value=3e+02 Score=30.47 Aligned_cols=108 Identities=6% Similarity=0.059 Sum_probs=61.0
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCC--------------------C--
Q 040576 291 MIDGYAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMIRGDA--------------------K-- 348 (641)
Q Consensus 291 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------------------~-- 348 (641)
++..+...|..+-|.++...+.. ++..--.+..+|...|++++|...|++.-. |+ .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCccccc
Confidence 44445555555554443333332 332222344555566666666666654321 11 1
Q ss_pred -CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcC
Q 040576 349 -PNEASLMSVLTACANMGVIDIGQWIHSYIQKCRIKPD----VLLSTSLLTMYAKCG 400 (641)
Q Consensus 349 -p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g 400 (641)
....-|..++..+.+.+.++.+.++-+..++.--..| ...+..+..+.+..|
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1223578888889999999999988888887532223 346667777776654
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.98 E-value=96 Score=27.22 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=31.2
Q ss_pred HHHHHHHHHHh--cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 040576 538 LGKIVAQHLME--LEPRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELE 586 (641)
Q Consensus 538 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 586 (641)
.+..+|..+.. ++-..+..|...+..+...|++.+|.++++.-.+++-+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 34456665554 34455566777777777777777777777776555433
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.88 E-value=1.3e+02 Score=24.32 Aligned_cols=61 Identities=3% Similarity=-0.081 Sum_probs=42.6
Q ss_pred HHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 040576 147 KMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEV 208 (641)
Q Consensus 147 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 208 (641)
.|++.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 67788887765543 34455555667889999999999888777777776777777777743
No 315
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.55 E-value=1.3e+02 Score=23.93 Aligned_cols=61 Identities=8% Similarity=0.103 Sum_probs=43.2
Q ss_pred HHHhcCCCCCcchHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 040576 147 KMMAKFVEHNHYTFPLLGKVCAGIR-SLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEV 208 (641)
Q Consensus 147 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 208 (641)
.|++.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 567788877765443 445566665 6788999999999888777777766677777776643
No 316
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.46 E-value=1.4e+02 Score=24.41 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHH
Q 040576 389 STSLLTMYAKCGVMDLARNVFDNMTEKNV---VSWNSMIMGYGMHGQ--GEKALEMFMEMEKRGPTPNDA 453 (641)
Q Consensus 389 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ 453 (641)
...++.=|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45567778888888888888888876522 233444445544322 345677777777776554433
No 317
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=32.00 E-value=1.9e+02 Score=25.05 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=44.5
Q ss_pred HHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHcCCC
Q 040576 319 WNILLALYV---RCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMGV-----IDIGQWIHSYIQKCRIK 383 (641)
Q Consensus 319 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~ 383 (641)
+.-+|+++. +-.+.+.|+-.+-+|++.|-.|.-..-..++.+....|. +..|...++.....|.+
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334566664 458999999999999999988877777777777665553 33445555555555543
No 318
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.69 E-value=1.6e+02 Score=25.18 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=33.4
Q ss_pred HHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 040576 321 ILLALYV---RCKDYCECLRLFDRMIRGDAKPNEASLMSVLTACANMG 365 (641)
Q Consensus 321 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 365 (641)
-+|+++. +-.+.+.|+-.+-+|++.|-.|.-..-..++.+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3555554 45899999999999999998887776666666665555
No 319
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.72 E-value=3.4e+02 Score=25.44 Aligned_cols=85 Identities=6% Similarity=-0.126 Sum_probs=37.6
Q ss_pred hhcCCChHHHHHhhhcCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchHHHHHHHHhcCCCchhH
Q 040576 100 CTSLSSVSLSVLFFDGIQE---PDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREG 176 (641)
Q Consensus 100 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 176 (641)
.+..|+.+.+..+++.-.. .+..-++.|.-+ +..|+.+-+ + .+.+.|..++...-...+...+..|+.+-+
T Consensus 27 Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A-~~~g~~~~v----~-~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v 100 (364)
T 3ljn_A 27 AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA-CKFGCVDTA----K-YLASVGEVHSLWHGQKPIHLAVMANKTDLV 100 (364)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHHCCHHHH----H-HHHHHCCCCCCBTTBCHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHH-HHcCCHHHH----H-HHHHCCCCccccCCCCHHHHHHHcCCHHHH
Confidence 3455666666666654322 222223333332 333444322 2 233334333332222233334456676666
Q ss_pred HHHHHHHHHhCCCC
Q 040576 177 KKVHARIVKCGFEL 190 (641)
Q Consensus 177 ~~~~~~~~~~g~~~ 190 (641)
..+++.....|..+
T Consensus 101 ~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 101 VALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHHHHTCCH
T ss_pred HHHHHhccccCCCH
Confidence 66666555445443
No 320
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.33 E-value=2e+02 Score=24.66 Aligned_cols=15 Identities=0% Similarity=-0.345 Sum_probs=7.9
Q ss_pred hcCCChHHHHHhhhc
Q 040576 101 TSLSSVSLSVLFFDG 115 (641)
Q Consensus 101 ~~~~~~~~A~~~~~~ 115 (641)
++.|+.+....+++.
T Consensus 14 ~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 14 AYSGKLDELKERILA 28 (231)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHh
Confidence 444555555555543
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.10 E-value=1.4e+02 Score=24.07 Aligned_cols=14 Identities=0% Similarity=-0.182 Sum_probs=6.2
Q ss_pred cHHHHHHHHHHhHH
Q 040576 467 MVLEGWWYFDLMQR 480 (641)
Q Consensus 467 ~~~~a~~~~~~~~~ 480 (641)
..-.|.++++.+.+
T Consensus 36 ~~~sa~ei~~~l~~ 49 (145)
T 2fe3_A 36 AHPTADDIYKALEG 49 (145)
T ss_dssp SCCCHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHH
Confidence 33344444444443
No 322
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.69 E-value=2.9e+02 Score=24.23 Aligned_cols=54 Identities=11% Similarity=0.128 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCch
Q 040576 434 EKALEMFMEMEKRGPTPND-ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKV 488 (641)
Q Consensus 434 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 488 (641)
+++.++|..|..+|+--.. .-|......+...|++.+|.++|+.-++ .+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR-MKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccHH
Confidence 5677899999988765543 4667777788889999999999999988 6777753
No 323
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.63 E-value=3.1e+02 Score=25.85 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCCCC
Q 040576 227 NSMIDGYVKNREVGFARELFDFMPER 252 (641)
Q Consensus 227 ~~li~~~~~~g~~~~A~~~~~~m~~~ 252 (641)
..++.-|...|+.++|...++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 44555555556666666666655433
No 324
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.57 E-value=2.4e+02 Score=23.32 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHhHHhhCCCCchH
Q 040576 434 EKALEMFMEMEKRGPTPND-ATFICVLSACTHAGMVLEGWWYFDLMQRIYKIEPKVE 489 (641)
Q Consensus 434 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 489 (641)
+.+.++|..|..+|+--.. .-|......+...|++.+|.++|...++ .+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~-~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ-QKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHHH
Confidence 3367788888888765443 4566677778888999999999998888 66777543
No 325
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.88 E-value=1e+02 Score=25.14 Aligned_cols=64 Identities=9% Similarity=0.331 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 040576 288 WNCMIDGYAKIGNVTSARNCFDRMCMRNV---VSWNILLALYVRCKD--YCECLRLFDRMIRGDAKPNE 351 (641)
Q Consensus 288 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 351 (641)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34566667677777777777777754421 223333334443222 34456666666666554433
No 326
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.69 E-value=2.1e+02 Score=26.92 Aligned_cols=49 Identities=14% Similarity=0.017 Sum_probs=19.9
Q ss_pred HHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 040576 295 YAKIGNVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCECLRLFDRMI 343 (641)
Q Consensus 295 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 343 (641)
.+..|+.+-+.-+++.-...+...-...+...+..|+.+-+..+++...
T Consensus 60 A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 108 (364)
T 3ljn_A 60 ACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAK 108 (364)
T ss_dssp HHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhcc
Confidence 3344555544444444322222111112223344555555555555433
No 327
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.44 E-value=1.9e+02 Score=22.92 Aligned_cols=16 Identities=6% Similarity=0.000 Sum_probs=10.1
Q ss_pred hhcCCChHHHHHhhhc
Q 040576 100 CTSLSSVSLSVLFFDG 115 (641)
Q Consensus 100 ~~~~~~~~~A~~~~~~ 115 (641)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3555667776666665
No 328
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=28.24 E-value=3.6e+02 Score=24.91 Aligned_cols=147 Identities=12% Similarity=0.056 Sum_probs=65.2
Q ss_pred HHHhcCChHHHHHHHHhc-CC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCH
Q 040576 294 GYAKIGNVTSARNCFDRM-CM---RNVVSWNILLALYVRCKDYCECLRLFDRMIRGDAKPNEAS--LMSVLTACANMGVI 367 (641)
Q Consensus 294 ~~~~~~~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~ 367 (641)
..+..|+.+-+..++++. .. .+..-.+.+..+... +.......+.+.+.+.|..++... -.+.+...+..|..
T Consensus 174 ~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~ 252 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 252 (337)
T ss_dssp HHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhh
Confidence 345566766666666543 11 122222223222222 222222233444455665554221 11223344566676
Q ss_pred HHHHHHHHHHHHcCCCCch---hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 040576 368 DIGQWIHSYIQKCRIKPDV---LLSTSLLTMYAKCGVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKALEMFMEME 444 (641)
Q Consensus 368 ~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 444 (641)
+.+..++.. .|..++. .-.+ -+..-++.|+.+-+.-+++.=..+|..+ . +..-++.|+.+ +.+-+.
T Consensus 253 ~~v~~Ll~~---~~~~vn~~d~~G~T-pL~~A~~~g~~~iv~~Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll 321 (337)
T 4g8k_A 253 GLVQRLLEQ---EHIEINDTDSDGKT-ALLLAVELKLKKIAELLCKRGASTDCGD--L-VMTARRNYDHS----LVKVLL 321 (337)
T ss_dssp HHHHHHHTS---TTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHTTSCSSTTCC--H-HHHHHHTTCHH----HHHHHH
T ss_pred HHHHHHHHh---cCCcccCcCCCCCC-HHHHHHHcCCHHHHHHHHHCCCCCCCCC--H-HHHHHHcCCHH----HHHHHH
Confidence 655544321 2322221 1112 2334456788777777766544444432 2 22334556643 445566
Q ss_pred HCCCCCCH
Q 040576 445 KRGPTPND 452 (641)
Q Consensus 445 ~~g~~p~~ 452 (641)
+.|-.||.
T Consensus 322 ~~GA~~d~ 329 (337)
T 4g8k_A 322 SHGAKEDF 329 (337)
T ss_dssp HTTCCC--
T ss_pred HCcCCCCC
Confidence 77766663
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.22 E-value=1.5e+02 Score=23.96 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=44.5
Q ss_pred HHHhcCCCCCcchHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 040576 147 KMMAKFVEHNHYTFPLLGKVCAGIR-SLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEV 208 (641)
Q Consensus 147 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 208 (641)
.|++.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 567788877765443 445666665 6788999999999988777777777777777777754
No 330
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.23 E-value=1.8e+02 Score=23.54 Aligned_cols=32 Identities=6% Similarity=0.054 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040576 433 GEKALEMFMEMEKRGPTPNDATFICVLSACTH 464 (641)
Q Consensus 433 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 464 (641)
.-.|.++++.+.+.+...+..|....+..+..
T Consensus 42 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 73 (150)
T 2xig_A 42 HLSPEEITHSIRQKDKNTSISSVYRILNFLEK 73 (150)
T ss_dssp CBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 33444444444444333344433333333333
No 331
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.94 E-value=2e+02 Score=24.88 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=8.4
Q ss_pred HHhcCCHHHHHHHHhcC
Q 040576 202 YSVCGEVLDARKVFEDG 218 (641)
Q Consensus 202 ~~~~g~~~~A~~~~~~~ 218 (641)
.+..|+.+-+..+++..
T Consensus 84 A~~~~~~~~~~~Ll~~~ 100 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNG 100 (237)
T ss_dssp HHHTTCHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHhCC
Confidence 34455555555555443
No 332
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.92 E-value=2.8e+02 Score=22.96 Aligned_cols=14 Identities=7% Similarity=0.264 Sum_probs=6.7
Q ss_pred hcCCHHHHHHHHhc
Q 040576 204 VCGEVLDARKVFED 217 (641)
Q Consensus 204 ~~g~~~~A~~~~~~ 217 (641)
..|+.+....+++.
T Consensus 14 ~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 14 NQRDTKKVKEILQD 27 (201)
T ss_dssp HTTCHHHHHHHHTC
T ss_pred HhccHHHHHHHHHc
Confidence 34455555555443
No 333
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.61 E-value=4.1e+02 Score=24.65 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc--cHHHHHHHHHHhHHhhCCCC
Q 040576 420 WNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAG--MVLEGWWYFDLMQRIYKIEP 486 (641)
Q Consensus 420 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~p 486 (641)
...++.=|...|+.++|...++++....+. .......+..++.+.+ ..+....++..+.+ .|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~-~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWK-SSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH-HCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHH-CCCCC
Confidence 456677777788888888888777521111 1123334444444432 23455566666665 34433
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.79 E-value=81 Score=23.36 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=18.2
Q ss_pred ChHHHHHHHHhcCCCCcchHHHHHHHHHHcCChHH
Q 040576 300 NVTSARNCFDRMCMRNVVSWNILLALYVRCKDYCE 334 (641)
Q Consensus 300 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 334 (641)
+.+.|.++++.++.+...+|..++.++...|+..-
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHH
Confidence 44555555555555555555555555544444333
No 335
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.42 E-value=3e+02 Score=22.77 Aligned_cols=78 Identities=14% Similarity=-0.004 Sum_probs=40.5
Q ss_pred HHHHhCCChHHHHHHHhhCC-C---CCchhHHHHHHHHhcCCChHHHHHHHhhcCCCC---chHHHHHHHHHHhcCChHH
Q 040576 231 DGYVKNREVGFARELFDFMP-E---RDIFTWNSMISGYVDVGDMEAANGLFDLMPFRD---VVSWNCMIDGYAKIGNVTS 303 (641)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~m~-~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~ 303 (641)
...+..|+.+....++..-. . .|...++ .+...+..|+.+-+..+++.-..++ ..-. +-+...+..|+.+-
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~ 87 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIEIAKALIDRGADINLQNSISD-SPYLYAGAQGRTEI 87 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHH
Confidence 34456778887777776552 2 2222222 3334455677777766666543322 1111 22334445667666
Q ss_pred HHHHHHh
Q 040576 304 ARNCFDR 310 (641)
Q Consensus 304 A~~~~~~ 310 (641)
+..+++.
T Consensus 88 ~~~Ll~~ 94 (201)
T 3hra_A 88 LAYMLKH 94 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666644
No 336
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.24 E-value=99 Score=22.89 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=28.8
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 040576 400 GVMDLARNVFDNMTEKNVVSWNSMIMGYGMHGQGEKA 436 (641)
Q Consensus 400 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 436 (641)
.+.+.|.++++.++.++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678888888888888888888888888766665544
No 337
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.86 E-value=1.3e+02 Score=24.13 Aligned_cols=61 Identities=5% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 040576 144 YYEKMMAKFVEHNHYTFPLLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCG 206 (641)
Q Consensus 144 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 206 (641)
+.+.+++.|++++..-...+ ..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 6 ~~~~L~~~g~r~T~qR~~Il-~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQRQLVL-EAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHTTTCCCCHHHHHHH-HHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCHHHHHHH-HHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
No 338
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.35 E-value=1.2e+02 Score=24.10 Aligned_cols=14 Identities=7% Similarity=-0.156 Sum_probs=7.0
Q ss_pred HcCCCchhHHHHHH
Q 040576 132 LMLNDPFGALSFYY 145 (641)
Q Consensus 132 ~~~g~~~~A~~~~~ 145 (641)
+..|+.+....+++
T Consensus 10 ~~~g~~~~v~~ll~ 23 (156)
T 1bd8_A 10 AARGDVQEVRRLLH 23 (156)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 44455555555544
No 339
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.95 E-value=5e+02 Score=24.71 Aligned_cols=214 Identities=8% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc--CCCCcchHHHHHHHHHHcCChHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 040576 289 NCMIDGYAKIGNVTSARNCFDRM--CMRNVVSWNILLALYVRCKDYCE--CLRLFDRMIRGDAKPNEASLMSVLTACANM 364 (641)
Q Consensus 289 ~~li~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 364 (641)
..++.-|...++.++|...++++ .......-..+|..-...++.+. +-.++..+. .++-+.......+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhh
Q ss_pred CCHH--------HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--HHHHHHHHhhcCCCChh----------------
Q 040576 365 GVID--------IGQWIHSYIQKCRIKPDVLLSTSLLTMYAKCGV--MDLARNVFDNMTEKNVV---------------- 418 (641)
Q Consensus 365 g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~---------------- 418 (641)
.++. ..-.++..++..++-|-..........-+..|. ++.|..++..=......
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~veel 216 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHL 216 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCHHHH
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHHHH
Q ss_pred --HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc--cHHHHHHHHHHhHHhhCCCCchHHHHHH
Q 040576 419 --SWNSMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAG--MVLEGWWYFDLMQRIYKIEPKVEHYGCM 494 (641)
Q Consensus 419 --~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l 494 (641)
..+.++.=|...|+.++|...++++....+. .......+..++-+.+ ..+....++..+.. .++-+.......+
T Consensus 217 kkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~-~glls~~q~~~Gf 294 (358)
T 3eiq_C 217 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWK-SSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTCSCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHH-CCCCCHHHHHHHH
Q ss_pred HHHHhhcCCHH
Q 040576 495 VDLLGRAGLMR 505 (641)
Q Consensus 495 i~~~~~~g~~~ 505 (641)
...+....++.
T Consensus 295 ~~vl~~ldDl~ 305 (358)
T 3eiq_C 295 ERIYNEIPDIN 305 (358)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccHhh
No 340
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.88 E-value=1.5e+02 Score=23.60 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 040576 162 LLGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGEV 208 (641)
Q Consensus 162 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 208 (641)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 45566666667788899999988887777777766677777777643
No 341
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.88 E-value=3.6e+02 Score=23.10 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHHH---HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc
Q 040576 422 SMIMGY---GMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGM 467 (641)
Q Consensus 422 ~li~~~---~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 467 (641)
-+|+++ .+..+.+.|+-++-+|.+.| .|....=..++-+...-|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 344444 35688999999999999998 6555444445555555553
No 342
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.20 E-value=1.1e+02 Score=23.98 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=33.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc
Q 040576 422 SMIMGYGMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAGM 467 (641)
Q Consensus 422 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 467 (641)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455565666677788888888887777777777777777777664
No 343
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.08 E-value=1.5e+02 Score=24.44 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=28.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHhHHhh--CCCCchHHHHHHHHHHhhcCC
Q 040576 444 EKRGPTPNDATFICVLSACTHAGMVLEGWWYFDLMQRIY--KIEPKVEHYGCMVDLLGRAGL 503 (641)
Q Consensus 444 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~ 503 (641)
.+.|++++..-. .++..+...+..-.|.++++.+.+ . +...+..|...-++.+...|-
T Consensus 25 ~~~g~r~T~qR~-~IL~~L~~~~~h~sA~eI~~~l~~-~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQRE-VLLKTLYHSDTHYTPESLYMEIKQ-AEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHHHH-HHHHHHHSCCSCBCHHHHHHHHHH-HCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHCCC
Confidence 345666554422 344444444555556666666655 2 223333333334455555553
No 344
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.90 E-value=3e+02 Score=21.87 Aligned_cols=109 Identities=9% Similarity=-0.017 Sum_probs=48.2
Q ss_pred hhcCCChHHHHHhhhcCC----CCCcccHHHHHHHHHcCCCchhHHHHHHHHHHhcCCCCCcchH--HHHHHHHhcCCCc
Q 040576 100 CTSLSSVSLSVLFFDGIQ----EPDAFMCNTIMKSFLMLNDPFGALSFYYEKMMAKFVEHNHYTF--PLLGKVCAGIRSL 173 (641)
Q Consensus 100 ~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~ 173 (641)
.++.|+.+....+++.-. ..+..-++.+.. .+..|+. ++++ .+.+.|..++.... .+.+...+..|+.
T Consensus 15 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 88 (165)
T 3twr_A 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHF-AAGYNRV----SVVE-YLLQHGADVHAKDKGGLVPLHNACSYGHY 88 (165)
T ss_dssp HHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHH-HHHTTCH----HHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHhCCHHHHHHHHHcCCCCccccccCCCCHHHH-HHHcChH----HHHH-HHHhcCCCCCccCCCCCCHHHHHHHcCcH
Confidence 356677777777776432 122222233333 3344553 3333 34445555443321 1222333344554
Q ss_pred hhHHHHHHHHHHhCCCCChhHH--HHHHHHHHhcCCHHHHHHHHhcC
Q 040576 174 REGKKVHARIVKCGFELDLFVR--NSLIHMYSVCGEVLDARKVFEDG 218 (641)
Q Consensus 174 ~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~ 218 (641)
+ +.+.+.+.|..++.... ...+...+..|+.+-+.-+++.+
T Consensus 89 ~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 131 (165)
T 3twr_A 89 E----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131 (165)
T ss_dssp H----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred H----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 4 33444455554432211 12233334455665555555543
No 345
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.34 E-value=3.8e+02 Score=22.78 Aligned_cols=15 Identities=0% Similarity=-0.334 Sum_probs=6.5
Q ss_pred HHcCCCchhHHHHHH
Q 040576 131 FLMLNDPFGALSFYY 145 (641)
Q Consensus 131 ~~~~g~~~~A~~~~~ 145 (641)
.+..|+.+....++.
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 344444444444433
No 346
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=20.78 E-value=2e+02 Score=27.31 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=39.2
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcccCceEEEEeeeeecccccccCCCCchhhHHHHHHHHHHHH
Q 040576 551 PRDPGPYVLLSNIYASEGKWDEVENLRRIMKEKELEKAVGSSLVHPGEFASESIVENCPPHRKCIVYSMLGEIGAQM 627 (641)
Q Consensus 551 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~l~~~~ 627 (641)
..+...|..++..+.+.+++.||++.+-+..+- ++. -.-.-+|++ ||..+=++..++
T Consensus 293 n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V-i~~-----------------YNY~reDeE--IYKEf~eIAnel 349 (472)
T 3re2_A 293 DHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV-AGK-----------------YNYSKDDEE--MYKEFHEIANDL 349 (472)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTT-----------------SCCCGGGHH--HHHHHHHHHHTH
T ss_pred cCCccchhhhhhhhhhcchHHHHHHHHHHHHHH-HHH-----------------cCCCccHHH--HHHHHHHHHHHH
Confidence 445677888888899999999999988776321 000 233456777 888877776654
No 347
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=20.76 E-value=1.4e+02 Score=27.05 Aligned_cols=105 Identities=11% Similarity=0.025 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCCHHHHHHHHhcCCCCCe---eHHHHHHHHHHhCCChHHHHHHHh-
Q 040576 174 REGKKVHARIVKCGFELDLFV--RNSLIHMYSVCGEVLDARKVFEDGPVWDL---VTWNSMIDGYVKNREVGFARELFD- 247 (641)
Q Consensus 174 ~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~- 247 (641)
..-.+++..+.+.|..++... ....+...+..|+.+-+.-+++.+..++. .-++.| ...+..|+.+-+.-+++
T Consensus 160 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpL-h~A~~~g~~~iv~~Ll~~ 238 (276)
T 4hbd_A 160 QDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL-MCACEHGHKEIAGLLLAV 238 (276)
T ss_dssp HHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHTS
T ss_pred hhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCCCHHHHHHHHhc
Confidence 334445555555554332211 12233334456666666666665443322 222222 23344566655555555
Q ss_pred hCCC---CCchhHHHHHHHHhcCCChHHHHHHHhhc
Q 040576 248 FMPE---RDIFTWNSMISGYVDVGDMEAANGLFDLM 280 (641)
Q Consensus 248 ~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 280 (641)
.-.. .|..-. +.+...+..|+.+-+..+++.+
T Consensus 239 ~gad~~~~d~~g~-TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 239 PSCDISLTDRDGS-TALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp TTCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCCCcCcCCCCC-CHHHHHHHcCCHHHHHHHHhcc
Confidence 2211 222221 2233344456666666665543
No 348
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.73 E-value=1.6e+02 Score=23.08 Aligned_cols=45 Identities=11% Similarity=0.258 Sum_probs=30.8
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 040576 163 LGKVCAGIRSLREGKKVHARIVKCGFELDLFVRNSLIHMYSVCGE 207 (641)
Q Consensus 163 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 207 (641)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445555556677888888888877766666666666677776664
No 349
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.18 E-value=4.1e+02 Score=22.71 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=30.7
Q ss_pred HHHHHH---HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 040576 422 SMIMGY---GMHGQGEKALEMFMEMEKRGPTPNDATFICVLSACTHAG 466 (641)
Q Consensus 422 ~li~~~---~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 466 (641)
-+|+++ .+..+.+.|+-++-+|.+.|-.|....=..++-+...-|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 344554 356889999999999999987766555445555555444
Done!