BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040579
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1
Length = 160
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 18/89 (20%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEAS 47
+LKSSDGE FE HM+EDDC + +PLPNVT KI K I+YC +H EA+
Sbjct: 7 VLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAA 66
Query: 48 MFD----DLATTSIDDDLKAWDADLVKVD 72
+ A TS DDDLKAWDAD +K+D
Sbjct: 67 ASKAEAVEGAATS-DDDLKAWDADFMKID 94
>sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1
Length = 163
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 53/89 (59%), Gaps = 17/89 (19%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEAS 47
+LKSSDGE FE HMIEDDCA + IPLPNVT I K I+YC KH EA+
Sbjct: 9 ILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAA 68
Query: 48 MF----DDLATTSIDDDLKAWDADLVKVD 72
D ++ +D+LK WD++ VKVD
Sbjct: 69 AEAGGDKDFYGSAENDELKNWDSEFVKVD 97
>sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1
Length = 171
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 26/97 (26%)
Query: 2 LKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEASM 48
LKSSDGE FE HMIEDDC + IPLPNVT KI K I+YC +H EA+
Sbjct: 9 LKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAE 68
Query: 49 FDD-------------LATTSIDDDLKAWDADLVKVD 72
+ +A+ S D+DLK WD++ +KVD
Sbjct: 69 KSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVD 105
>sp|Q9SL93|ASK3_ARATH SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1
Length = 163
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEAS 47
+LKSSDGE FE HMIEDDC + IPLPNVT I K I+YC KH EA+
Sbjct: 9 ILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAA 68
Query: 48 MF----DDLATTSIDDDLKAWDADLVKVD 72
D ++ + +LK WD D VKVD
Sbjct: 69 AEAGGDKDFYGSTENHELKTWDNDFVKVD 97
>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1
Length = 153
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 45/86 (52%), Gaps = 19/86 (22%)
Query: 1 MLKSSDGEVFE--------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEA 46
+LKSSDG FE HM E+DC + IPLPNVT KI I+YCNKH
Sbjct: 7 ILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKH--- 63
Query: 47 SMFDDLATTSIDDDLKAWDADLVKVD 72
D A DDDLK WD + ++ D
Sbjct: 64 --HVDAANPCSDDDLKKWDKEFMEKD 87
>sp|Q9M1X4|ASK5_ARATH SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1
Length = 153
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 43/84 (51%), Gaps = 22/84 (26%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEAS 47
MLKSSDG+ FE HM+ED CA D IPL NVT KI I YC KH
Sbjct: 6 MLKSSDGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKH---- 61
Query: 48 MFDDLATTSIDDDLKAWDADLVKV 71
+ ++DLK WDAD +K
Sbjct: 62 -----VKSKEEEDLKEWDADFMKT 80
>sp|Q9M1X5|ASK13_ARATH SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1
Length = 154
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 17/83 (20%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEAS 47
ML SSDGE F+ HMIEDDC + +P+ NVT I K I+YC KH
Sbjct: 6 MLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKH---- 61
Query: 48 MFDDLATTSIDDDLKAWDADLVK 70
+ D T D+LK WDA+ +K
Sbjct: 62 VVSDSPTEESKDELKKWDAEFMK 84
>sp|Q9LSX8|ASK10_ARATH SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=1
Length = 152
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 43/83 (51%), Gaps = 18/83 (21%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEAS 47
+LKSSDG FE HM EDDC + IPLP VT KI I+YCNKH
Sbjct: 7 ILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKH---- 62
Query: 48 MFDDLATTSIDDDLKAWDADLVK 70
D A D+DLK WD + ++
Sbjct: 63 -HVDAANPCSDEDLKKWDKEFME 84
>sp|Q9LSY0|ASK7_ARATH SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1
Length = 125
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 18/85 (21%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEAS 47
MLKSSDG++FE HMIE +C + IP+ NVT +I I+YCNKH
Sbjct: 7 MLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKH---- 62
Query: 48 MFDDLATTSIDDDLKAWDADLVKVD 72
D A D+DLK WD + ++ D
Sbjct: 63 -HVDAANPCSDEDLKKWDKEFMEKD 86
>sp|O81057|ASK14_ARATH SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1
Length = 149
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 42/85 (49%), Gaps = 26/85 (30%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKH--DE 45
+L SSDGE FE HMIEDDC V +PL NVT KI ++YC KH DE
Sbjct: 7 VLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVVDE 66
Query: 46 ASMFDDLATTSIDDDLKAWDADLVK 70
S D+ K WD + +K
Sbjct: 67 ES-----------DEFKTWDEEFMK 80
>sp|O81058|ASK19_ARATH SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=1 SV=1
Length = 200
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 13/56 (23%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKH 43
+L SSDGE F+ H+IEDDCA ++IP+PNVT +I K I+YC KH
Sbjct: 7 VLTSSDGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEYCKKH 62
>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1
Length = 152
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 41/80 (51%), Gaps = 22/80 (27%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKH--DE 45
+L SSDG+ FE HM+EDDC D IPL NV KI K I+YC KH DE
Sbjct: 7 VLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKHHVDE 66
Query: 46 ASMFDDLATTSIDDDLKAWD 65
A+ ++DL WD
Sbjct: 67 ANPIS-------EEDLNNWD 79
>sp|Q1PEF6|ASK6_ARATH SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1
Length = 85
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 9 VFEHMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEASMFDDLATTSIDDDLKAWDADL 68
+ + M EDDCA + IPLPNVT KI I+YC KH S ++DLK WDA+
Sbjct: 2 MIKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKH---------VVESKEEDLKKWDAEF 52
Query: 69 VK 70
+K
Sbjct: 53 MK 54
>sp|O65674|ASK12_ARATH SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1
Length = 152
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 22/80 (27%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKH--DE 45
+L SSDG+ FE HM+EDDC D IPL NV KI K I+YC K+ DE
Sbjct: 7 VLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVDE 66
Query: 46 ASMFDDLATTSIDDDLKAWD 65
A+ ++DL WD
Sbjct: 67 ANPIS-------EEDLNKWD 79
>sp|Q1PEL7|ASK15_ARATH SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2
Length = 177
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 21/91 (23%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEAS 47
+L SSDGE F+ H++EDDC ++ IPL NVT I ++YC KH +
Sbjct: 7 VLTSSDGESFQVEEVVARKLQIVKHLLEDDCVINEIPLQNVTGNILSIVLEYCKKHVDDV 66
Query: 48 MF----DDLATTSIDDDLK----AWDADLVK 70
+ ++ DD+ K AWDA+ +K
Sbjct: 67 VDDDASEEPKKKKPDDEAKQNLDAWDAEFMK 97
>sp|Q9LSY1|ASK8_ARATH SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1
Length = 152
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 18/85 (21%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEAS 47
MLKSS+G+ FE HMIE +C + I + +T +I I+YCNKH
Sbjct: 7 MLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKH---- 62
Query: 48 MFDDLATTSIDDDLKAWDADLVKVD 72
D A DDDL+ WD + ++ D
Sbjct: 63 -HVDAANPCSDDDLEKWDKEFMEKD 86
>sp|O81055|ASK16_ARATH SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1
Length = 170
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 22/92 (23%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKH---- 43
+L SSD E FE HMI+DDCA IPL NVT I I+YC KH
Sbjct: 7 VLTSSDDESFEVEEAVARKLKVIAHMIDDDCADKAIPLENVTGNILALVIEYCKKHVLDD 66
Query: 44 -----DEASMFDDLATTSIDDDLKAWDADLVK 70
D + ++L+ WDA+ +K
Sbjct: 67 VDDSDDSTEATSENVNEEAKNELRTWDAEFMK 98
>sp|Q9SY65|ASK18_ARATH SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2
Length = 158
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 16/84 (19%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKH-DEA 46
+L SSDGE FE HM+ED+CA + IPL NVT I K I+Y H +E
Sbjct: 7 LLTSSDGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEP 66
Query: 47 SMFDDLATTSIDDDLKAWDADLVK 70
S D+ +L +WDA ++
Sbjct: 67 SEEDEDEEAK--KNLDSWDAKFME 88
>sp|Q9SL65|ASK17_ARATH SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=1 SV=1
Length = 150
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 40/83 (48%), Gaps = 21/83 (25%)
Query: 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEAS 47
+L SSD E FE HMI+DDCA I L NVT KI I+YC KH
Sbjct: 7 VLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKH---- 62
Query: 48 MFDDLATTSIDDDLKAWDADLVK 70
DD+ ++ WDA+ VK
Sbjct: 63 -VDDVEAK---NEFVTWDAEFVK 81
>sp|P52285|SKP1A_DICDI SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium
discoideum GN=fpaA PE=1 SV=1
Length = 162
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 2 LKSSDGEVFE-------------HMIEDDCAVDR-IPLPNVTIKIFYKAIKYCNKHDE-- 45
L+SSD +VFE +MIED D IPLPNVT I K + YC H +
Sbjct: 6 LESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHP 65
Query: 46 ASMFDDLATTSIDDDLKAWDADLVKVD 72
+ DD DD+ +D D KVD
Sbjct: 66 SPQGDDKKDEKRLDDIPPYDRDFCKVD 92
>sp|Q557E4|SKP1B_DICDI SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium
discoideum GN=fpaB-1 PE=1 SV=1
Length = 162
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 2 LKSSDGEVFE-------------HMIEDDCAVD-RIPLPNVTIKIFYKAIKYCNKHDE-- 45
L+SSD +VFE +MIED D IPLPNVT I K + YC H +
Sbjct: 6 LESSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHP 65
Query: 46 ASMFDDLATTSIDDDLKAWDADLVKVD 72
+ DD DD+ +D D KVD
Sbjct: 66 SPQGDDKKDEKRLDDIPPYDRDFCKVD 92
>sp|Q71U00|SKP1_XENLA S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1
PE=1 SV=3
Length = 163
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 2 LKSSDGEVFEHMIE------------------DDCAVDRIPLPNVTIKIFYKAIKYCNKH 43
L+SSDGE+FE +E D+ D +PLPNV I K I++C H
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65
Query: 44 DEASMFDDLATT--SIDDDLKAWDADLVKVD 72
+ + DD+ WD + +KVD
Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVD 96
>sp|Q6PEC4|SKP1_RAT S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1
PE=2 SV=3
Length = 163
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 2 LKSSDGEVFEHMIE------------------DDCAVDRIPLPNVTIKIFYKAIKYCNKH 43
L+SSDGE+FE +E D+ D +PLPNV I K I++C H
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65
Query: 44 DEASMFDDLATT--SIDDDLKAWDADLVKVD 72
+ + DD+ WD + +KVD
Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVD 96
>sp|Q5R512|SKP1_PONAB S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2
SV=1
Length = 163
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 2 LKSSDGEVFEHMIE------------------DDCAVDRIPLPNVTIKIFYKAIKYCNKH 43
L+SSDGE+FE +E D+ D +PLPNV I K I++C H
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65
Query: 44 DEASMFDDLATT--SIDDDLKAWDADLVKVD 72
+ + DD+ WD + +KVD
Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVD 96
>sp|Q9WTX5|SKP1_MOUSE S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1
SV=3
Length = 163
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 2 LKSSDGEVFEHMIE------------------DDCAVDRIPLPNVTIKIFYKAIKYCNKH 43
L+SSDGE+FE +E D+ D +PLPNV I K I++C H
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65
Query: 44 DEASMFDDLATT--SIDDDLKAWDADLVKVD 72
+ + DD+ WD + +KVD
Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVD 96
>sp|Q4R5B9|SKP1_MACFA S-phase kinase-associated protein 1 OS=Macaca fascicularis
GN=SKP1 PE=2 SV=1
Length = 163
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 2 LKSSDGEVFEHMIE------------------DDCAVDRIPLPNVTIKIFYKAIKYCNKH 43
L+SSDGE+FE +E D+ D +PLPNV I K I++C H
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65
Query: 44 DEASMFDDLATT--SIDDDLKAWDADLVKVD 72
+ + DD+ WD + +KVD
Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVD 96
>sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1
SV=2
Length = 163
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 2 LKSSDGEVFEHMIE------------------DDCAVDRIPLPNVTIKIFYKAIKYCNKH 43
L+SSDGE+FE +E D+ D +PLPNV I K I++C H
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65
Query: 44 DEASMFDDLATT--SIDDDLKAWDADLVKVD 72
+ + DD+ WD + +KVD
Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVD 96
>sp|Q5ZKF5|SKP1_CHICK S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2
SV=1
Length = 163
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 2 LKSSDGEVFEHMIE------------------DDCAVDRIPLPNVTIKIFYKAIKYCNKH 43
L+SSDGE+FE +E D+ D +PLPNV I K I++C H
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65
Query: 44 DEASMFDDLATT--SIDDDLKAWDADLVKVD 72
+ + DD+ WD + +KVD
Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVD 96
>sp|P63209|SKP1_CAVPO S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1
PE=2 SV=2
Length = 163
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 2 LKSSDGEVFEHMIE------------------DDCAVDRIPLPNVTIKIFYKAIKYCNKH 43
L+SSDGE+FE +E D+ D +PLPNV I K I++C H
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65
Query: 44 DEASMFDDLATT--SIDDDLKAWDADLVKVD 72
+ + DD+ WD + +KVD
Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVD 96
>sp|Q3ZCF3|SKP1_BOVIN S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2
SV=1
Length = 163
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 2 LKSSDGEVFEHMIE------------------DDCAVDRIPLPNVTIKIFYKAIKYCNKH 43
L+SSDGE+FE +E D+ D +PLPNV I K I++C H
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 65
Query: 44 DEASMFDDLATT--SIDDDLKAWDADLVKVD 72
+ + DD+ WD + +KVD
Sbjct: 66 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVD 96
>sp|Q5KU00|SKP1_ASPOR E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=sconC PE=3 SV=1
Length = 161
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 8 EVFEHMIEDDCAV-DRIPLPNVTIKIFYKAIKYCNKH--DEASMFDDLATTSIDDDLKAW 64
++ ++M+ED + IP+PNV + K I++C H D S DD + D+ W
Sbjct: 27 QLIKNMLEDLGETGEPIPIPNVNEAVLKKVIEWCTHHKNDPPSTGDDDDSRRKTTDIDEW 86
Query: 65 DADLVKVD 72
D ++VD
Sbjct: 87 DQKFMQVD 94
>sp|B8NSJ0|SKP1_ASPFN E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus
flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 /
JCM 12722 / SRRC 167) GN=sconC PE=3 SV=1
Length = 161
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 8 EVFEHMIEDDCAV-DRIPLPNVTIKIFYKAIKYCNKH--DEASMFDDLATTSIDDDLKAW 64
++ ++M+ED + IP+PNV + K I++C H D S DD + D+ W
Sbjct: 27 QLIKNMLEDLGETGEPIPIPNVNEAVLKKVIEWCTHHKNDPPSTGDDDDSRRKTTDIDEW 86
Query: 65 DADLVKVD 72
D ++VD
Sbjct: 87 DQKFMQVD 94
>sp|A1CZG3|SKP1_NEOFI E3 ubiquitin ligase complex SCF subunit sconC OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=sconC PE=3 SV=1
Length = 158
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 9 VFEHMIEDDCAVDR-IPLPNVTIKIFYKAIKYCNKH--DEASMFDDLATTSIDDDLKAWD 65
+ ++M+ED D IP+PNV + K I++C H D S DD + D+ WD
Sbjct: 26 LIKNMLEDLGESDEAIPIPNVNEVVLKKVIEWCTHHKNDPPSTGDDDDSRRKTTDIDEWD 85
Query: 66 ADLVKVD 72
++VD
Sbjct: 86 QKFMQVD 92
>sp|Q4WTT8|SKP1_ASPFU E3 ubiquitin ligase complex SCF subunit sconC OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=sconC PE=3 SV=1
Length = 158
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 9 VFEHMIEDDCAVDR-IPLPNVTIKIFYKAIKYCNKH--DEASMFDDLATTSIDDDLKAWD 65
+ ++M+ED D IP+PNV + K I++C H D S DD + D+ WD
Sbjct: 26 LIKNMLEDLGESDEAIPIPNVNEVVLKKVIEWCTHHKNDPPSTGDDDDSRRKTTDIDEWD 85
Query: 66 ADLVKVD 72
++VD
Sbjct: 86 QKFMQVD 92
>sp|B0Y3B5|SKP1_ASPFC E3 ubiquitin ligase complex SCF subunit sconC OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=sconC PE=3 SV=1
Length = 158
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 9 VFEHMIEDDCAVDR-IPLPNVTIKIFYKAIKYCNKH--DEASMFDDLATTSIDDDLKAWD 65
+ ++M+ED D IP+PNV + K I++C H D S DD + D+ WD
Sbjct: 26 LIKNMLEDLGESDEAIPIPNVNEVVLKKVIEWCTHHKNDPPSTGDDDDSRRKTTDIDEWD 85
Query: 66 ADLVKVD 72
++VD
Sbjct: 86 QKFMQVD 92
>sp|Q0CA59|SKP1_ASPTN E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=sconC PE=3
SV=1
Length = 161
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 9 VFEHMIEDDCAV-DRIPLPNVTIKIFYKAIKYCNKH--DEASMFDDLATTSIDDDLKAWD 65
+ ++M+ED + IP+PNV + K I++C H D S DD + D+ WD
Sbjct: 29 LIKNMLEDLGETGEAIPIPNVNEAVLKKVIEWCTHHKNDPPSTGDDDDSRRKTTDIDEWD 88
Query: 66 ADLVKVD 72
++VD
Sbjct: 89 QKFMQVD 95
>sp|A1C9U5|SKP1_ASPCL E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 /
NCTC 3887 / NRRL 1) GN=sconC PE=3 SV=1
Length = 159
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 9 VFEHMIED-DCAVDRIPLPNVTIKIFYKAIKYCNKH--DEASMFDDLATTSIDDDLKAWD 65
+ ++M+ED + + IP+PNV + K I++C H D S DD + D+ WD
Sbjct: 27 LIKNMLEDLGESGEAIPIPNVNEVVLKKVIEWCTHHKNDPPSTGDDDDSRRKTTDIDEWD 86
Query: 66 ADLVKVD 72
++VD
Sbjct: 87 QKFMQVD 93
>sp|C5FHU9|SKP1_ARTOC E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma otae
(strain ATCC MYA-4605 / CBS 113480) GN=sconC PE=3 SV=1
Length = 165
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 9 VFEHMIED-DCAVDRIPLPNVTIKIFYKAIKYCNKH--DEASMFDD-----LATTSIDDD 60
+ ++M+ED + + IP+PNV + K I++C H D S DD TT ID+
Sbjct: 31 LIKNMLEDLGDSGEAIPIPNVNESVLKKVIEWCKHHKGDPPSTGDDDVDSRRKTTDIDE- 89
Query: 61 LKAWDADLVKVD 72
WD ++VD
Sbjct: 90 ---WDQKFMQVD 98
>sp|D4ARL8|SKP1_ARTBC E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma
benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=sconC
PE=3 SV=1
Length = 164
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 9 VFEHMIED-DCAVDRIPLPNVTIKIFYKAIKYCNKH--DEASMFDD-----LATTSIDDD 60
+ ++M+ED + + IP+PNV + K I++C H D S DD TT ID+
Sbjct: 31 LIKNMLEDLGDSGEPIPIPNVNESVLKKVIEWCEHHKGDPPSTGDDDVDSRRKTTDIDE- 89
Query: 61 LKAWDADLVKVD 72
WD ++VD
Sbjct: 90 ---WDQKFMQVD 98
>sp|Q8TGW7|SKP1_ARTOT E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma otae
GN=sconC PE=2 SV=1
Length = 165
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 23 IPLPNVTIKIFYKAIKYCNKH--DEASMFDD-----LATTSIDDDLKAWDADLVKVD 72
IP+PNV + K I++C H D S DD TT ID+ WD ++VD
Sbjct: 46 IPIPNVNESVLKKVIEWCKHHKGDPPSTGDDDVDSRRKTTDIDE----WDQKFMQVD 98
>sp|B6QGB9|SKP1_PENMQ E3 ubiquitin ligase complex SCF subunit sconC OS=Penicillium
marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333)
GN=sconC PE=3 SV=1
Length = 160
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 23 IPLPNVTIKIFYKAIKYCNKH--DEASMFDD----LATTSIDDDLKAWDADLVKVD 72
+P+PNV + K I++C H D S +D TT ID+ WD ++VD
Sbjct: 42 VPIPNVNESVLKKVIEWCTHHKNDPQSTGEDDDNRRRTTEIDE----WDQKFMQVD 93
>sp|Q8NK13|SKP1_NEUCR E3 ubiquitin ligase complex SCF subunit scon-3 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=scon-3 PE=1 SV=1
Length = 171
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 28/95 (29%)
Query: 2 LKSSDGEVF-------------EHMIED--DCAV--DRIPLPNVTIKIFYKAIKYCNKHD 44
L+S+DG++ +++IED D AV + IPLPNV + K +++C H
Sbjct: 14 LQSNDGQIITVDRVVAERSLLIKNLIEDLGDEAVMNEAIPLPNVNEPVLRKVVEWCEHHR 73
Query: 45 EASMFDDLATTSIDDDLKA-------WDADLVKVD 72
+ D TT ++D + WD ++VD
Sbjct: 74 K----DPPQTTEDENDSRKKSTEIDEWDQKFMQVD 104
>sp|B8MDP8|SKP1_TALSN E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces
stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 /
NRRL 1006) GN=sconC PE=3 SV=1
Length = 160
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 12/57 (21%)
Query: 23 IPLPNVTIKIFYKAIKYCNKHDEASMFDDLATTSIDDDLKA-------WDADLVKVD 72
+P+PNV + K I++C H +D TT +DD + WD ++VD
Sbjct: 42 VPIPNVNESVLKKVIEWCTHHK-----NDPQTTGEEDDNRRRTTEIDEWDQKFMQVD 93
>sp|Q9Y709|SKP1_SCHPO Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=skp1 PE=1 SV=1
Length = 161
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 9 VFEHMIEDDCAVD-RIPLPNVTIKIFYKAIKYCNKH--------DEASMFDDLATTSIDD 59
+ ++M+ED ++ IPLPNV+ + K +++C H +E S +T ID+
Sbjct: 26 LIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKNDLYSGTEEESDIRLKKSTDIDE 85
Query: 60 DLKAWDADLVKVD 72
WD + VD
Sbjct: 86 ----WDRKFMAVD 94
>sp|A1WVX2|DCUP_HALHL Uroporphyrinogen decarboxylase OS=Halorhodospira halophila (strain
DSM 244 / SL1) GN=hemE PE=3 SV=1
Length = 364
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 4 SSDGEVFEHMIEDDCAVDRIPLPNVTIKIFY--KAIKYCNK 42
+ +G VFEH ++ +DR+P P+ ++ Y A+ C K
Sbjct: 95 TGEGPVFEHRVKTAADIDRLPQPSAQKELRYVMDAVAACRK 135
>sp|Q7A0G9|PUR8_STAAW Adenylosuccinate lyase OS=Staphylococcus aureus (strain MW2)
GN=purB PE=1 SV=1
Length = 431
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 19 AVDRIPLPNVTIKIFYKAIKYCNKHDEASMFDDLATTSID 58
+ +RI LP+VTI + Y ++ N D ++F+D +ID
Sbjct: 307 SAERIMLPDVTIALDYALNRFTNIVDRLTVFEDNMRNNID 346
>sp|Q6G825|PUR8_STAAS Adenylosuccinate lyase OS=Staphylococcus aureus (strain MSSA476)
GN=purB PE=3 SV=1
Length = 431
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 19 AVDRIPLPNVTIKIFYKAIKYCNKHDEASMFDDLATTSID 58
+ +RI LP+VTI + Y ++ N D ++F+D +ID
Sbjct: 307 SAERIMLPDVTIALDYALNRFTNIVDRLTVFEDNMRNNID 346
>sp|Q6GFE9|PUR8_STAAR Adenylosuccinate lyase OS=Staphylococcus aureus (strain MRSA252)
GN=purB PE=3 SV=1
Length = 431
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 19 AVDRIPLPNVTIKIFYKAIKYCNKHDEASMFDDLATTSID 58
+ +RI LP+VTI + Y ++ N D ++F+D +ID
Sbjct: 307 SAERIMLPDVTIALDYALNRFTNIVDRLTVFEDNMRNNID 346
>sp|Q7A4Q3|PUR8_STAAN Adenylosuccinate lyase OS=Staphylococcus aureus (strain N315)
GN=purB PE=1 SV=1
Length = 431
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 19 AVDRIPLPNVTIKIFYKAIKYCNKHDEASMFDDLATTSID 58
+ +RI LP+VTI + Y ++ N D ++F+D +ID
Sbjct: 307 SAERIMLPDVTIALDYALNRFTNIVDRLTVFEDNMRNNID 346
>sp|Q99SX9|PUR8_STAAM Adenylosuccinate lyase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=purB PE=1 SV=1
Length = 431
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 19 AVDRIPLPNVTIKIFYKAIKYCNKHDEASMFDDLATTSID 58
+ +RI LP+VTI + Y ++ N D ++F+D +ID
Sbjct: 307 SAERIMLPDVTIALDYALNRFTNIVDRLTVFEDNMRNNID 346
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,119,817
Number of Sequences: 539616
Number of extensions: 878483
Number of successful extensions: 1851
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1763
Number of HSP's gapped (non-prelim): 61
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)