Query 040579
Match_columns 72
No_of_seqs 119 out of 590
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:39:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 99.9 1.5E-24 5E-29 137.9 3.1 72 1-72 10-102 (169)
2 1fs1_B SKP1, cyclin A/CDK2-ass 99.9 1.1E-23 3.9E-28 130.2 2.8 71 1-72 5-90 (141)
3 2p1m_A SKP1-like protein 1A; F 99.9 2.3E-23 7.9E-28 131.1 1.7 72 1-72 7-94 (160)
4 2ast_A S-phase kinase-associat 99.8 4.5E-21 1.5E-25 120.2 2.7 72 1-72 4-95 (159)
5 1hv2_A Elongin C, ELC1; protei 99.8 2.8E-20 9.6E-25 109.4 -0.7 59 1-64 7-80 (99)
6 2fnj_C Transcription elongatio 99.7 9.4E-20 3.2E-24 106.6 0.1 56 1-64 4-77 (96)
7 1vcb_B Protein (elongin C); tu 99.7 1.2E-19 4.1E-24 108.9 -0.0 56 1-64 20-93 (112)
8 4ajy_C Transcription elongatio 99.7 7.6E-19 2.6E-23 102.5 0.3 57 1-65 5-79 (97)
9 3ga1_A Nucleus accumbens-assoc 88.2 0.82 2.8E-05 26.2 4.2 32 12-44 61-93 (129)
10 3b84_A Zinc finger and BTB dom 86.0 0.58 2E-05 26.6 2.6 33 12-45 52-84 (119)
11 2vpk_A Myoneurin; transcriptio 85.4 1.4 4.8E-05 24.6 4.0 32 12-44 50-83 (116)
12 2if5_A Zinc finger and BTB dom 84.5 1.4 4.8E-05 24.7 3.8 25 20-44 64-88 (120)
13 2ppi_A Gigaxonin; BTB domain, 83.0 2 7E-05 25.2 4.2 24 20-43 88-111 (144)
14 2q81_A MIZ-1 protein; BTB/POZ 82.3 1.7 5.8E-05 24.5 3.5 31 12-44 55-85 (119)
15 3ohu_A Transcription regulator 80.8 2.5 8.5E-05 23.9 3.9 32 12-43 60-93 (125)
16 2vkp_A BTB/POZ domain-containi 79.3 1.3 4.4E-05 24.4 2.2 25 21-45 51-75 (109)
17 3htm_A Speckle-type POZ protei 78.7 2.2 7.4E-05 25.2 3.3 34 12-45 62-98 (172)
18 3fkc_A Transcriptional regulat 74.2 2.3 7.9E-05 24.0 2.4 24 20-43 65-88 (116)
19 2yy9_A Zinc finger and BTB dom 73.6 1.4 4.9E-05 25.5 1.5 26 20-45 60-85 (135)
20 1buo_A POZ domain, protein (pr 73.1 2.3 8E-05 23.9 2.3 26 20-45 62-87 (121)
21 1r29_A B-cell lymphoma 6 prote 71.6 3.5 0.00012 23.3 2.8 25 20-44 67-92 (127)
22 4eoz_A Speckle-type POZ protei 71.3 2.6 9.1E-05 24.1 2.2 25 21-45 65-89 (145)
23 3m5b_A Zinc finger and BTB dom 70.5 3.4 0.00012 23.5 2.6 22 21-42 61-82 (119)
24 1xb4_A VPS25, hypothetical 23. 70.4 2 6.7E-05 27.6 1.6 13 34-46 32-44 (202)
25 3cuq_C Vacuolar protein-sortin 65.5 2.7 9.2E-05 26.4 1.5 13 34-46 35-47 (176)
26 2z8h_A Transcription regulator 64.2 8.8 0.0003 22.0 3.5 34 12-45 64-99 (138)
27 2xuv_A HDEB, 10K-L protein; un 63.5 2.9 0.0001 23.0 1.2 27 21-47 39-65 (79)
28 3hve_A Gigaxonin; ubiquitin, c 60.7 6.3 0.00021 24.9 2.6 25 21-45 73-97 (256)
29 1got_G GT-gamma; complex (GTP- 52.8 7.4 0.00025 21.0 1.7 17 30-46 41-57 (73)
30 1dj8_A HDEA, protein HNS-depen 51.6 9.2 0.00032 21.4 2.0 17 30-46 56-72 (89)
31 2ihc_A Transcription regulator 46.4 16 0.00055 20.4 2.6 33 12-44 57-91 (124)
32 3v5w_G G gamma-I, guanine nucl 46.4 16 0.00056 20.0 2.4 22 21-46 32-53 (77)
33 3i3n_A Kelch-like protein 11; 39.8 21 0.0007 22.8 2.5 24 21-44 75-104 (279)
34 3gox_A Restriction endonucleas 36.6 24 0.00081 22.7 2.4 16 29-44 184-199 (200)
35 1ng7_A Poliovirus 3A-N, genome 36.0 18 0.00063 18.9 1.5 12 34-45 32-43 (60)
36 3hqi_A Speckle-type POZ protei 34.9 24 0.00081 22.8 2.3 25 20-44 213-237 (312)
37 3p8c_F ABL interactor 2; actin 33.0 21 0.0007 22.1 1.6 16 29-44 23-38 (159)
38 3v7e_A Ribosome-associated pro 30.5 43 0.0015 17.8 2.5 20 26-45 35-54 (82)
39 3r2c_J Protein NUSE, 30S ribos 27.8 18 0.00061 19.9 0.6 26 1-26 9-43 (83)
40 4h10_A ARYL hydrocarbon recept 26.3 55 0.0019 17.3 2.4 19 29-47 47-65 (73)
41 4ath_A MITF, microphthalmia-as 24.3 54 0.0018 18.1 2.2 18 29-46 30-47 (83)
42 3r8n_J 30S ribosomal protein S 23.2 76 0.0026 17.5 2.8 10 2-11 6-15 (98)
43 3iz5_f 60S ribosomal protein L 23.1 75 0.0026 18.0 2.8 23 23-45 47-69 (112)
44 2waa_A Acetyl esterase, xylan 23.0 13 0.00043 24.7 -0.7 15 31-45 331-345 (347)
45 3ffm_A Growth arrest and DNA-d 22.6 40 0.0014 21.0 1.5 17 30-46 140-156 (167)
46 3on1_A BH2414 protein; structu 22.5 71 0.0024 17.4 2.5 19 26-44 42-60 (101)
47 4h10_B Circadian locomoter out 22.5 48 0.0017 17.6 1.7 17 29-45 43-59 (71)
48 3d9j_A RNA-binding protein 16; 21.6 77 0.0026 18.6 2.7 34 9-46 6-39 (145)
49 1d8j_A General transcription f 21.4 57 0.0019 17.9 1.9 19 27-45 7-26 (81)
50 3v7q_A Probable ribosomal prot 21.3 84 0.0029 17.2 2.7 20 26-45 43-62 (101)
51 3u5e_c L32, RP73, YL38, 60S ri 20.6 82 0.0028 17.4 2.5 19 26-44 46-64 (105)
52 1m0d_A Endonuclease, endodeoxy 20.5 30 0.001 20.9 0.7 9 37-45 99-107 (138)
53 3d3c_J 30S ribosomal protein S 20.2 31 0.001 19.0 0.6 25 2-26 15-48 (87)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=99.89 E-value=1.5e-24 Score=137.91 Aligned_cols=72 Identities=26% Similarity=0.519 Sum_probs=54.9
Q ss_pred CeecCChhHHH-------------HHHHhcCC-----C--CcccCCCCCHHHHHHHHHHHHHcCCCCCCcc-ccCCCCCC
Q 040579 1 MLKSSDGEVFE-------------HMIEDDCA-----V--DRIPLPNVTIKIFYKAIKYCNKHDEASMFDD-LATTSIDD 59 (72)
Q Consensus 1 ~L~SsDg~~f~-------------~~i~~~~~-----~--~~IplpnV~~~~L~kViewc~~H~~~~~~~~-~~~~~~~~ 59 (72)
+|+||||++|+ +||++.+. + .+||||||+|.+|+|||+||+||+.++++.. +...+...
T Consensus 10 ~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 89 (169)
T 3v7d_A 10 VLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSA 89 (169)
T ss_dssp EEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--------CC
T ss_pred EEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 58999999998 88887653 3 6899999999999999999999999876542 12234567
Q ss_pred CcChhhhhccccC
Q 040579 60 DLKAWDADLVKVD 72 (72)
Q Consensus 60 ~i~~WD~~F~~~d 72 (72)
.+++||++||+++
T Consensus 90 ~i~~wD~~Fl~vd 102 (169)
T 3v7d_A 90 PVDSWDREFLKVD 102 (169)
T ss_dssp CCCHHHHHHTCSC
T ss_pred cccHHHHHHHcCC
Confidence 8999999999874
No 2
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.88 E-value=1.1e-23 Score=130.22 Aligned_cols=71 Identities=41% Similarity=0.735 Sum_probs=51.3
Q ss_pred CeecCChhHHH-------------HHHHhcCCCCcccCCCCCHHHHHHHHHHHHHcCCCCCCccc--cCCCCCCCcChhh
Q 040579 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEASMFDDL--ATTSIDDDLKAWD 65 (72)
Q Consensus 1 ~L~SsDg~~f~-------------~~i~~~~~~~~IplpnV~~~~L~kViewc~~H~~~~~~~~~--~~~~~~~~i~~WD 65 (72)
+|+||||+.|+ +|+++.+ +++||||||+|.+|+|||+||+||+.++++..+ ........+++||
T Consensus 5 ~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD 83 (141)
T 1fs1_B 5 KLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWD 83 (141)
T ss_dssp EEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHH
T ss_pred EEEeCCCCEEEecHHHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHH
Confidence 58999999999 8888765 779999999999999999999999988754332 1124567899999
Q ss_pred hhccccC
Q 040579 66 ADLVKVD 72 (72)
Q Consensus 66 ~~F~~~d 72 (72)
++|++++
T Consensus 84 ~~F~~vd 90 (141)
T 1fs1_B 84 QEFLKVD 90 (141)
T ss_dssp HHHTCSC
T ss_pred HHHHhCC
Confidence 9999864
No 3
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.87 E-value=2.3e-23 Score=131.10 Aligned_cols=72 Identities=60% Similarity=0.988 Sum_probs=18.8
Q ss_pred CeecCChhHHH-------------HHHHhcCCCCcccCCCCCHHHHHHHHHHHHHcCCCCCCccccC---CCCCCCcChh
Q 040579 1 MLKSSDGEVFE-------------HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEASMFDDLAT---TSIDDDLKAW 64 (72)
Q Consensus 1 ~L~SsDg~~f~-------------~~i~~~~~~~~IplpnV~~~~L~kViewc~~H~~~~~~~~~~~---~~~~~~i~~W 64 (72)
+|+||||+.|. +|+++.+.+++||||||++.+|+|||+||+||+.++++..+.. ......+++|
T Consensus 7 ~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~w 86 (160)
T 2p1m_A 7 VLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAW 86 (160)
T ss_dssp -CCC---------CHHHHTCTTTC------------CCTTSCHHHHHHHHHC----------------------------
T ss_pred EEEcCCCCEEEECHHHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHH
Confidence 58999999999 8888776667999999999999999999999998865433211 2456789999
Q ss_pred hhhccccC
Q 040579 65 DADLVKVD 72 (72)
Q Consensus 65 D~~F~~~d 72 (72)
|++|++++
T Consensus 87 D~~Fl~vd 94 (160)
T 2p1m_A 87 DADFMKID 94 (160)
T ss_dssp --------
T ss_pred HHHHHcCC
Confidence 99999864
No 4
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.81 E-value=4.5e-21 Score=120.24 Aligned_cols=72 Identities=40% Similarity=0.702 Sum_probs=53.6
Q ss_pred CeecCChhHHH-------------HHHHhcC-CC----CcccCCCCCHHHHHHHHHHHHHcCCCCCCccc--cCCCCCCC
Q 040579 1 MLKSSDGEVFE-------------HMIEDDC-AV----DRIPLPNVTIKIFYKAIKYCNKHDEASMFDDL--ATTSIDDD 60 (72)
Q Consensus 1 ~L~SsDg~~f~-------------~~i~~~~-~~----~~IplpnV~~~~L~kViewc~~H~~~~~~~~~--~~~~~~~~ 60 (72)
+|+|+||+.|. +|+++.+ .+ .+||||||++.+|+|||+||+||+.++++..+ ........
T Consensus 4 ~L~ssDg~~f~v~~~vA~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~ 83 (159)
T 2ast_A 4 KLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 83 (159)
T ss_dssp EEECTTSCEEEEEHHHHHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------CCC
T ss_pred EEEcCCCCEEEeCHHHHHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccchhh
Confidence 58999999999 7777632 22 68999999999999999999999988755332 11245678
Q ss_pred cChhhhhccccC
Q 040579 61 LKAWDADLVKVD 72 (72)
Q Consensus 61 i~~WD~~F~~~d 72 (72)
+++||++|++++
T Consensus 84 i~~wD~~F~~id 95 (159)
T 2ast_A 84 IPVWDQEFLKVD 95 (159)
T ss_dssp CCHHHHHHTCSC
T ss_pred hhHHHHHHHcCC
Confidence 999999999864
No 5
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.76 E-value=2.8e-20 Score=109.39 Aligned_cols=59 Identities=31% Similarity=0.377 Sum_probs=47.3
Q ss_pred CeecCChhHHH-------------HHHHhcCC--CCcccCCCCCHHHHHHHHHHHHHcCCCCCCccccCCCCCCCcChh
Q 040579 1 MLKSSDGEVFE-------------HMIEDDCA--VDRIPLPNVTIKIFYKAIKYCNKHDEASMFDDLATTSIDDDLKAW 64 (72)
Q Consensus 1 ~L~SsDg~~f~-------------~~i~~~~~--~~~IplpnV~~~~L~kViewc~~H~~~~~~~~~~~~~~~~~i~~W 64 (72)
+|+||||++|+ +||++... .++||||||+|.+|+|||+||+||++++.+. .....+++|
T Consensus 7 ~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~-----~~~~~i~~w 80 (99)
T 1hv2_A 7 TLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVS-----EDDDEIPEF 80 (99)
T ss_dssp EEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHC-----SSCSSCCCC
T ss_pred EEEecCCCEEEECHHHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCc-----cccccCCCc
Confidence 58999999999 88887432 3689999999999999999999999764322 234567888
No 6
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.75 E-value=9.4e-20 Score=106.58 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=44.6
Q ss_pred CeecCChhHHH-------------HHHHhcCC-----CCcccCCCCCHHHHHHHHHHHHHcCCCCCCccccCCCCCCCcC
Q 040579 1 MLKSSDGEVFE-------------HMIEDDCA-----VDRIPLPNVTIKIFYKAIKYCNKHDEASMFDDLATTSIDDDLK 62 (72)
Q Consensus 1 ~L~SsDg~~f~-------------~~i~~~~~-----~~~IplpnV~~~~L~kViewc~~H~~~~~~~~~~~~~~~~~i~ 62 (72)
+|+||||++|+ +|+++.+. .++||||||+|.+|+|||+||+||+.++. ....++
T Consensus 4 ~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~--------~~~~i~ 75 (96)
T 2fnj_C 4 KLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN--------SSTEIP 75 (96)
T ss_dssp EEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHS--------CCSCCC
T ss_pred EEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCC--------CcccCC
Confidence 58999999999 88887542 25899999999999999999999997542 134567
Q ss_pred hh
Q 040579 63 AW 64 (72)
Q Consensus 63 ~W 64 (72)
+|
T Consensus 76 ~w 77 (96)
T 2fnj_C 76 EF 77 (96)
T ss_dssp CC
T ss_pred Cc
Confidence 77
No 7
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.74 E-value=1.2e-19 Score=108.92 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=44.4
Q ss_pred CeecCChhHHH-------------HHHHhcCC-----CCcccCCCCCHHHHHHHHHHHHHcCCCCCCccccCCCCCCCcC
Q 040579 1 MLKSSDGEVFE-------------HMIEDDCA-----VDRIPLPNVTIKIFYKAIKYCNKHDEASMFDDLATTSIDDDLK 62 (72)
Q Consensus 1 ~L~SsDg~~f~-------------~~i~~~~~-----~~~IplpnV~~~~L~kViewc~~H~~~~~~~~~~~~~~~~~i~ 62 (72)
+|+|+||++|+ +||++.+. ..+||||||++.+|+|||+||+||+.++. ....++
T Consensus 20 ~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~--------~~~~i~ 91 (112)
T 1vcb_B 20 KLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN--------SSTEIP 91 (112)
T ss_dssp EEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSS--------CSSCCC
T ss_pred EEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccC--------CcCCCC
Confidence 58999999999 77776432 25899999999999999999999998642 234577
Q ss_pred hh
Q 040579 63 AW 64 (72)
Q Consensus 63 ~W 64 (72)
+|
T Consensus 92 ~w 93 (112)
T 1vcb_B 92 EF 93 (112)
T ss_dssp CC
T ss_pred Cc
Confidence 78
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.71 E-value=7.6e-19 Score=102.50 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=44.9
Q ss_pred CeecCChhHHH-------------HHHHhcCC-----CCcccCCCCCHHHHHHHHHHHHHcCCCCCCccccCCCCCCCcC
Q 040579 1 MLKSSDGEVFE-------------HMIEDDCA-----VDRIPLPNVTIKIFYKAIKYCNKHDEASMFDDLATTSIDDDLK 62 (72)
Q Consensus 1 ~L~SsDg~~f~-------------~~i~~~~~-----~~~IplpnV~~~~L~kViewc~~H~~~~~~~~~~~~~~~~~i~ 62 (72)
+|+|+||++|. +|+++.+. ..+||||||++.+|+|||+||+||+.++. ....++
T Consensus 5 ~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~--------~~~~i~ 76 (97)
T 4ajy_C 5 KLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN--------SSTEIP 76 (97)
T ss_dssp EEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTT--------CCSCCC
T ss_pred EEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCC--------CcCCCC
Confidence 58999999998 77776432 46899999999999999999999998642 234577
Q ss_pred hhh
Q 040579 63 AWD 65 (72)
Q Consensus 63 ~WD 65 (72)
+|+
T Consensus 77 ~~~ 79 (97)
T 4ajy_C 77 EFP 79 (97)
T ss_dssp CCC
T ss_pred cCc
Confidence 774
No 9
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=88.20 E-value=0.82 Score=26.21 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=25.2
Q ss_pred HHHHhcCCCCcccCC-CCCHHHHHHHHHHHHHcC
Q 040579 12 HMIEDDCAVDRIPLP-NVTIKIFYKAIKYCNKHD 44 (72)
Q Consensus 12 ~~i~~~~~~~~Iplp-nV~~~~L~kViewc~~H~ 44 (72)
.|+... ....|.|| +|+..+++.+++|+.--.
T Consensus 61 ~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg~ 93 (129)
T 3ga1_A 61 DLFNNS-RSAVVELPAAVQPQSFQQILSFCYTGR 93 (129)
T ss_dssp HHHHHC-CCSEEECCTTCCHHHHHHHHHHHHHSE
T ss_pred HHHcCC-CCCEEEECCCCCHHHHHHHHHHHhCCc
Confidence 555544 45679998 899999999999987643
No 10
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=85.97 E-value=0.58 Score=26.55 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=25.1
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHHcCC
Q 040579 12 HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDE 45 (72)
Q Consensus 12 ~~i~~~~~~~~IplpnV~~~~L~kViewc~~H~~ 45 (72)
.|+... ....|.|++++..+++.+++|+.--.-
T Consensus 52 ~~f~~~-~~~~i~l~~~~~~~f~~ll~~iYtg~~ 84 (119)
T 3b84_A 52 SLYGDG-SGGSVVLPAGFAEIFGLLLDFFYTGHL 84 (119)
T ss_dssp HHHTTT-TCCCEEECGGGHHHHHHHHHHHHHSCC
T ss_pred HHHCCC-CCCeEEeCCCCHHHHHHHHHHHcCCCC
Confidence 555432 246799999999999999999976543
No 11
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=85.37 E-value=1.4 Score=24.63 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=23.2
Q ss_pred HHHHhcCCCCcccCC--CCCHHHHHHHHHHHHHcC
Q 040579 12 HMIEDDCAVDRIPLP--NVTIKIFYKAIKYCNKHD 44 (72)
Q Consensus 12 ~~i~~~~~~~~Iplp--nV~~~~L~kViewc~~H~ 44 (72)
.|+... ....|.|+ +++..+++.+++|+.--.
T Consensus 50 ~~f~~~-~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 50 AIYRST-SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp HHHTTC-CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred HHHcCC-CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 555543 24456565 999999999999997653
No 12
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=84.46 E-value=1.4 Score=24.70 Aligned_cols=25 Identities=4% Similarity=0.082 Sum_probs=21.7
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHcC
Q 040579 20 VDRIPLPNVTIKIFYKAIKYCNKHD 44 (72)
Q Consensus 20 ~~~IplpnV~~~~L~kViewc~~H~ 44 (72)
...|.|++++..+++.+++|+.--.
T Consensus 64 ~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 64 QNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp CSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred CceEEeCCCCHHHHHHHHHHHcCCC
Confidence 4579999999999999999988654
No 13
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=83.04 E-value=2 Score=25.18 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=20.9
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHc
Q 040579 20 VDRIPLPNVTIKIFYKAIKYCNKH 43 (72)
Q Consensus 20 ~~~IplpnV~~~~L~kViewc~~H 43 (72)
...|.|++|+..+++.+++|+.--
T Consensus 88 ~~~I~l~~v~~~~f~~lL~fiYtg 111 (144)
T 2ppi_A 88 TYKIELEGISVMVMREILDYIFSG 111 (144)
T ss_dssp CCEEECCSSCHHHHHHHHHHHTTS
T ss_pred CcEEEeCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999998643
No 14
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=82.31 E-value=1.7 Score=24.51 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=24.5
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHHcC
Q 040579 12 HMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHD 44 (72)
Q Consensus 12 ~~i~~~~~~~~IplpnV~~~~L~kViewc~~H~ 44 (72)
.|+.. ....|.|+.++..+++.+++|+.--.
T Consensus 55 ~~f~~--~~~~i~l~~~~~~~f~~ll~~~Ytg~ 85 (119)
T 2q81_A 55 MLFVD--QKDVVHLDISNAAGLGQVLEFMYTAK 85 (119)
T ss_dssp HHHHH--CCSGGGGGGCCHHHHHHHHHHHHHSC
T ss_pred HHHcC--CCCEEEeCCCCHHHHHHHHHHHcCCC
Confidence 55554 34578899999999999999997654
No 15
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=80.78 E-value=2.5 Score=23.87 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=23.8
Q ss_pred HHHHhcC-CCCcccCCC-CCHHHHHHHHHHHHHc
Q 040579 12 HMIEDDC-AVDRIPLPN-VTIKIFYKAIKYCNKH 43 (72)
Q Consensus 12 ~~i~~~~-~~~~Iplpn-V~~~~L~kViewc~~H 43 (72)
.|+.... ....|.|++ |+..+++.+++|+.--
T Consensus 60 ~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 60 QALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp HHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred HHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 5554322 245799998 9999999999998643
No 16
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=79.27 E-value=1.3 Score=24.36 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHcCC
Q 040579 21 DRIPLPNVTIKIFYKAIKYCNKHDE 45 (72)
Q Consensus 21 ~~IplpnV~~~~L~kViewc~~H~~ 45 (72)
..|.|++++..+++.+++|+.--.-
T Consensus 51 ~~i~l~~~~~~~f~~~l~~iYt~~~ 75 (109)
T 2vkp_A 51 SEIHIPDVEPAAFLILLKYMYSDEI 75 (109)
T ss_dssp CEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred CeEEeCCCCHHHHHHHHHHHcCCCc
Confidence 6799999999999999999987543
No 17
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=78.74 E-value=2.2 Score=25.18 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=25.8
Q ss_pred HHHHhcC---CCCcccCCCCCHHHHHHHHHHHHHcCC
Q 040579 12 HMIEDDC---AVDRIPLPNVTIKIFYKAIKYCNKHDE 45 (72)
Q Consensus 12 ~~i~~~~---~~~~IplpnV~~~~L~kViewc~~H~~ 45 (72)
.|+.... ....|.|++++..+++.+++|+....-
T Consensus 62 ~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~ 98 (172)
T 3htm_A 62 AMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA 98 (172)
T ss_dssp HHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred HHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC
Confidence 5665421 235799999999999999999986543
No 18
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=74.16 E-value=2.3 Score=23.97 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.9
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHc
Q 040579 20 VDRIPLPNVTIKIFYKAIKYCNKH 43 (72)
Q Consensus 20 ~~~IplpnV~~~~L~kViewc~~H 43 (72)
...|.|++|+..+++.+++|+.--
T Consensus 65 ~~~i~l~~~~~~~f~~~l~~~Ytg 88 (116)
T 3fkc_A 65 GQVVELSFIRAEIFAEILNYIYSS 88 (116)
T ss_dssp CSEEEECSSCHHHHHHHHHHHTTS
T ss_pred CCEEEeCCCCHHHHHHHHHhhcCC
Confidence 467999999999999999998643
No 19
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=73.61 E-value=1.4 Score=25.48 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=22.0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHcCC
Q 040579 20 VDRIPLPNVTIKIFYKAIKYCNKHDE 45 (72)
Q Consensus 20 ~~~IplpnV~~~~L~kViewc~~H~~ 45 (72)
...|.|++|+..+++.+++|+...+-
T Consensus 60 ~~~i~l~~~~~~~f~~lL~fiYtg~~ 85 (135)
T 2yy9_A 60 GGSVVLPAGFAEIFGLLLDFFYTGHL 85 (135)
T ss_dssp -CCEEECGGGHHHHHHHHHHHHHSCC
T ss_pred CCeEEeCCCCHHHHHHHHHHHhCCCC
Confidence 35799999999999999999987654
No 20
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=73.05 E-value=2.3 Score=23.93 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.3
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHcCC
Q 040579 20 VDRIPLPNVTIKIFYKAIKYCNKHDE 45 (72)
Q Consensus 20 ~~~IplpnV~~~~L~kViewc~~H~~ 45 (72)
...|.|++|+..+++.+++|+.--.-
T Consensus 62 ~~~i~l~~~~~~~f~~ll~~~Ytg~~ 87 (121)
T 1buo_A 62 SQHYTLDFLSPKTFQQILEYAYTATL 87 (121)
T ss_dssp CSEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred CcEEEeCCCCHHHHHHHHHhhcCCCc
Confidence 46799999999999999999886543
No 21
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=71.64 E-value=3.5 Score=23.30 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=21.3
Q ss_pred CCcccC-CCCCHHHHHHHHHHHHHcC
Q 040579 20 VDRIPL-PNVTIKIFYKAIKYCNKHD 44 (72)
Q Consensus 20 ~~~Ipl-pnV~~~~L~kViewc~~H~ 44 (72)
...|.| ++++..+++.+++|+.--.
T Consensus 67 ~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 67 LSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp CSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred CCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 457889 8999999999999997643
No 22
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=71.27 E-value=2.6 Score=24.06 Aligned_cols=25 Identities=12% Similarity=0.341 Sum_probs=22.0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHcCC
Q 040579 21 DRIPLPNVTIKIFYKAIKYCNKHDE 45 (72)
Q Consensus 21 ~~IplpnV~~~~L~kViewc~~H~~ 45 (72)
..|.|++++..+++.+++|+....-
T Consensus 65 ~~i~l~~~~~~~~~~~l~~~Y~~~~ 89 (145)
T 4eoz_A 65 NRVEINDVEPEVFKEMMCFIYTGKA 89 (145)
T ss_dssp TEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred ceEEecCCCHHHHHHHHHhhccCcc
Confidence 5799999999999999999987644
No 23
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=70.52 E-value=3.4 Score=23.52 Aligned_cols=22 Identities=5% Similarity=0.071 Sum_probs=19.7
Q ss_pred CcccCCCCCHHHHHHHHHHHHH
Q 040579 21 DRIPLPNVTIKIFYKAIKYCNK 42 (72)
Q Consensus 21 ~~IplpnV~~~~L~kViewc~~ 42 (72)
..|.|++|+..+++.+++|+.-
T Consensus 61 ~~i~l~~v~~~~f~~ll~fiYt 82 (119)
T 3m5b_A 61 QWALGEGISPSTFAQLLNFVYG 82 (119)
T ss_dssp EEECCSSCCHHHHHHHHHHHTT
T ss_pred CEEEeCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999864
No 24
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=70.42 E-value=2 Score=27.63 Aligned_cols=13 Identities=15% Similarity=0.232 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCC
Q 040579 34 YKAIKYCNKHDEA 46 (72)
Q Consensus 34 ~kViewc~~H~~~ 46 (72)
..|+.||.||+--
T Consensus 32 ~LIL~ycr~~ki~ 44 (202)
T 1xb4_A 32 DIISQYCKTKKIW 44 (202)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCee
Confidence 3589999999875
No 25
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=65.50 E-value=2.7 Score=26.42 Aligned_cols=13 Identities=15% Similarity=0.593 Sum_probs=10.7
Q ss_pred HHHHHHHHHcCCC
Q 040579 34 YKAIKYCNKHDEA 46 (72)
Q Consensus 34 ~kViewc~~H~~~ 46 (72)
..|+.||.||+-.
T Consensus 35 ~LIl~ycr~~k~~ 47 (176)
T 3cuq_C 35 SLVLSFCRLHKQS 47 (176)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCee
Confidence 3589999999874
No 26
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=64.19 E-value=8.8 Score=21.98 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=24.4
Q ss_pred HHHHhcC-CCCcccCC-CCCHHHHHHHHHHHHHcCC
Q 040579 12 HMIEDDC-AVDRIPLP-NVTIKIFYKAIKYCNKHDE 45 (72)
Q Consensus 12 ~~i~~~~-~~~~Iplp-nV~~~~L~kViewc~~H~~ 45 (72)
.|+.... ....|.|+ +|+...++.+++|+.--+-
T Consensus 64 ~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~ 99 (138)
T 2z8h_A 64 SRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKL 99 (138)
T ss_dssp HHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCC
T ss_pred HHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCc
Confidence 5554322 22468886 8999999999999887543
No 27
>2xuv_A HDEB, 10K-L protein; unknown function; HET: MLY; 1.50A {Escherichia coli}
Probab=63.52 E-value=2.9 Score=23.01 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=20.0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHcCCCC
Q 040579 21 DRIPLPNVTIKIFYKAIKYCNKHDEAS 47 (72)
Q Consensus 21 ~~IplpnV~~~~L~kViewc~~H~~~~ 47 (72)
.-+.+..+.-..-.+|++||..|....
T Consensus 39 D~vd~~~~e~~~~Pkvie~Ckk~P~~s 65 (79)
T 2xuv_A 39 DTVTLNETDLTQIPXVIEYCXXNPQXN 65 (79)
T ss_dssp SBCCCCHHHHHHHHHHHHHHHHCTTSB
T ss_pred CccchhhhhhhcccHHHHHHhcCCcch
Confidence 357776665556789999999996643
No 28
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=60.68 E-value=6.3 Score=24.89 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=21.7
Q ss_pred CcccCCCCCHHHHHHHHHHHHHcCC
Q 040579 21 DRIPLPNVTIKIFYKAIKYCNKHDE 45 (72)
Q Consensus 21 ~~IplpnV~~~~L~kViewc~~H~~ 45 (72)
..|.|++|+..+++.+++|+..-.-
T Consensus 73 ~~i~l~~v~~~~f~~ll~~~Yt~~~ 97 (256)
T 3hve_A 73 YKIELEGISVMVMREILDYIFSGQI 97 (256)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHSCC
T ss_pred CeEEeCCCCHHHHHHHHhhccCCCC
Confidence 5799999999999999999886543
No 29
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=52.84 E-value=7.4 Score=21.02 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHcCCC
Q 040579 30 IKIFYKAIKYCNKHDEA 46 (72)
Q Consensus 30 ~~~L~kViewc~~H~~~ 46 (72)
|....-+++||+.|...
T Consensus 41 S~aa~~L~~Yce~~~~~ 57 (73)
T 1got_G 41 SKCCEEFRDYVEERSGE 57 (73)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 77888899999998653
No 30
>1dj8_A HDEA, protein HNS-dependent expression A; alpha helical, structural protein; 2.00A {Escherichia coli} SCOP: a.57.1.1 PDB: 1bg8_A
Probab=51.62 E-value=9.2 Score=21.39 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHcCCC
Q 040579 30 IKIFYKAIKYCNKHDEA 46 (72)
Q Consensus 30 ~~~L~kViewc~~H~~~ 46 (72)
..+-.+|++||..|...
T Consensus 56 e~v~P~vve~Ckk~P~~ 72 (89)
T 1dj8_A 56 ATVTPAIVQACTQDKQA 72 (89)
T ss_dssp HHHHHHHHHHHHTTTTS
T ss_pred HHhhHHHHHHHHhCchh
Confidence 34478999999999553
No 31
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=46.43 E-value=16 Score=20.41 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=23.1
Q ss_pred HHHHhcC-CCCcccCC-CCCHHHHHHHHHHHHHcC
Q 040579 12 HMIEDDC-AVDRIPLP-NVTIKIFYKAIKYCNKHD 44 (72)
Q Consensus 12 ~~i~~~~-~~~~Iplp-nV~~~~L~kViewc~~H~ 44 (72)
.|+.... ....|.|| +|+...++.+++|+..-.
T Consensus 57 ~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~ 91 (124)
T 2ihc_A 57 SRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAK 91 (124)
T ss_dssp HHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSE
T ss_pred HHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCC
Confidence 5554321 22468886 899999999999987643
No 32
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=46.42 E-value=16 Score=19.98 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=17.6
Q ss_pred CcccCCCCCHHHHHHHHHHHHHcCCC
Q 040579 21 DRIPLPNVTIKIFYKAIKYCNKHDEA 46 (72)
Q Consensus 21 ~~IplpnV~~~~L~kViewc~~H~~~ 46 (72)
+.|++ |..-+-+++||+.|...
T Consensus 32 ~RikV----SqaaadL~~yc~~~~~~ 53 (77)
T 3v5w_G 32 DRIKV----SKAAADLMAYCEAHAKE 53 (77)
T ss_dssp CCCCH----HHHHHHHHHHHHHSGGG
T ss_pred chhhH----HHHHHHHHHHHHhcCCC
Confidence 34555 78888999999999875
No 33
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=39.77 E-value=21 Score=22.77 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=20.0
Q ss_pred CcccCC------CCCHHHHHHHHHHHHHcC
Q 040579 21 DRIPLP------NVTIKIFYKAIKYCNKHD 44 (72)
Q Consensus 21 ~~Iplp------nV~~~~L~kViewc~~H~ 44 (72)
..|.|+ +|+..+++.+++|+..-.
T Consensus 75 ~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~ 104 (279)
T 3i3n_A 75 GRVEMRKWSSEPGPEPDTVEAVIEYMYTGR 104 (279)
T ss_dssp -EEECCCCSSTTCSCHHHHHHHHHHHHHSE
T ss_pred CeEEeccccccCCCCHHHHHHHHHhhCcCC
Confidence 468887 899999999999987643
No 34
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=36.59 E-value=24 Score=22.67 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHcC
Q 040579 29 TIKIFYKAIKYCNKHD 44 (72)
Q Consensus 29 ~~~~L~kViewc~~H~ 44 (72)
+...|.++|+|++.|.
T Consensus 184 np~~L~rai~YLe~H~ 199 (200)
T 3gox_A 184 NPKFLEKVIEYLKKYE 199 (200)
T ss_dssp CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcc
Confidence 4689999999999994
No 35
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=36.04 E-value=18 Score=18.87 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=9.4
Q ss_pred HHHHHHHHHcCC
Q 040579 34 YKAIKYCNKHDE 45 (72)
Q Consensus 34 ~kViewc~~H~~ 45 (72)
..|++||+...-
T Consensus 32 ~eV~~YC~~kGw 43 (60)
T 1ng7_A 32 QEVRDYCEKKGW 43 (60)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCc
Confidence 468999998754
No 36
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=34.93 E-value=24 Score=22.78 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=21.6
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHcC
Q 040579 20 VDRIPLPNVTIKIFYKAIKYCNKHD 44 (72)
Q Consensus 20 ~~~IplpnV~~~~L~kViewc~~H~ 44 (72)
...|.|++++..+++.+++|+.--.
T Consensus 213 ~~~i~l~~~~~~~f~~~L~~iYt~~ 237 (312)
T 3hqi_A 213 KNRVEINDVEPEVFKEMMCFIYTGK 237 (312)
T ss_dssp CSEEEECSSCHHHHHHHHHHHHHSC
T ss_pred CceEEecCCCHHHHHHHHHhhcCCC
Confidence 3579999999999999999987643
No 37
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=32.97 E-value=21 Score=22.13 Aligned_cols=16 Identities=13% Similarity=0.403 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHcC
Q 040579 29 TIKIFYKAIKYCNKHD 44 (72)
Q Consensus 29 ~~~~L~kViewc~~H~ 44 (72)
+..-|.+|.+||++.-
T Consensus 23 s~~nL~~vAdYCE~nY 38 (159)
T 3p8c_F 23 SYTNLERVADYCENNY 38 (159)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 3567999999999764
No 38
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=30.51 E-value=43 Score=17.75 Aligned_cols=20 Identities=0% Similarity=-0.004 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHHHHcCC
Q 040579 26 PNVTIKIFYKAIKYCNKHDE 45 (72)
Q Consensus 26 pnV~~~~L~kViewc~~H~~ 45 (72)
.+++..+.+++..+|+.+.-
T Consensus 35 ~D~~~~~~~~i~~lc~~~~I 54 (82)
T 3v7e_A 35 KDADPILTSSVVSLAEDQGI 54 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 47888999999999999864
No 39
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=27.80 E-value=18 Score=19.87 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=14.8
Q ss_pred CeecCChhHHH----HHHHh---cCC--CCcccCC
Q 040579 1 MLKSSDGEVFE----HMIED---DCA--VDRIPLP 26 (72)
Q Consensus 1 ~L~SsDg~~f~----~~i~~---~~~--~~~Iplp 26 (72)
+|.|.|-...+ .+++. .+. .+|||||
T Consensus 9 ~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPipLP 43 (83)
T 3r2c_J 9 KLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLP 43 (83)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHHHhCCeeeCCcCCC
Confidence 36677777666 33332 222 3688887
No 40
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=26.32 E-value=55 Score=17.33 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHcCCCC
Q 040579 29 TIKIFYKAIKYCNKHDEAS 47 (72)
Q Consensus 29 ~~~~L~kViewc~~H~~~~ 47 (72)
.+.+|.+.|+|....+..|
T Consensus 47 KasIL~~tV~ylk~l~~~~ 65 (73)
T 4h10_A 47 KLTVLRMAVQHMKTLRGAW 65 (73)
T ss_dssp HHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHHhcCc
Confidence 4789999999999998754
No 41
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=24.35 E-value=54 Score=18.08 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 040579 29 TIKIFYKAIKYCNKHDEA 46 (72)
Q Consensus 29 ~~~~L~kViewc~~H~~~ 46 (72)
.|.+|++-++|..+-+..
T Consensus 30 Kg~IL~ksvdYI~~Lq~e 47 (83)
T 4ath_A 30 KGTILKASVDYIRKLQRE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 489999999999887653
No 42
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=23.20 E-value=76 Score=17.49 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=5.8
Q ss_pred eecCChhHHH
Q 040579 2 LKSSDGEVFE 11 (72)
Q Consensus 2 L~SsDg~~f~ 11 (72)
|.|-|-...+
T Consensus 6 L~s~d~~~Ld 15 (98)
T 3r8n_J 6 LKAFDHRLID 15 (98)
T ss_dssp EEBSCHHHHH
T ss_pred EEECCHHHHH
Confidence 5566665555
No 43
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=23.07 E-value=75 Score=17.99 Aligned_cols=23 Identities=13% Similarity=-0.142 Sum_probs=18.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCC
Q 040579 23 IPLPNVTIKIFYKAIKYCNKHDE 45 (72)
Q Consensus 23 IplpnV~~~~L~kViewc~~H~~ 45 (72)
|-=.+++..+.++|..||+.|.-
T Consensus 47 ilA~D~~~~~~~~i~~~c~~~~i 69 (112)
T 3iz5_f 47 ILANNCPPLRKSEIETYAMLAKI 69 (112)
T ss_dssp EECSCCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHHHHHcCC
Confidence 33347889999999999999864
No 44
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=23.03 E-value=13 Score=24.70 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHcCC
Q 040579 31 KIFYKAIKYCNKHDE 45 (72)
Q Consensus 31 ~~L~kViewc~~H~~ 45 (72)
..|++++.|++||.+
T Consensus 331 ~~l~~~l~~~~~~~~ 345 (347)
T 2waa_A 331 PQLRQIMDWLEHHHH 345 (347)
T ss_dssp HHHHHHHTCCC----
T ss_pred HHHHHhhhHHhhccc
Confidence 457888889998865
No 45
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=22.57 E-value=40 Score=21.04 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHcCCC
Q 040579 30 IKIFYKAIKYCNKHDEA 46 (72)
Q Consensus 30 ~~~L~kViewc~~H~~~ 46 (72)
+..|.+++.||+.++..
T Consensus 140 ~~AL~~l~~fCeesr~~ 156 (167)
T 3ffm_A 140 DPALEKLSLFCEESRSV 156 (167)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhccc
Confidence 47799999999999874
No 46
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=22.54 E-value=71 Score=17.42 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 040579 26 PNVTIKIFYKAIKYCNKHD 44 (72)
Q Consensus 26 pnV~~~~L~kViewc~~H~ 44 (72)
.+++..+.+++..+|+.+.
T Consensus 42 ~D~~~~~~~~i~~~c~~~~ 60 (101)
T 3on1_A 42 SDAGIHTKKKLLDKCGSYQ 60 (101)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 4788999999999999875
No 47
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=22.47 E-value=48 Score=17.57 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHcCC
Q 040579 29 TIKIFYKAIKYCNKHDE 45 (72)
Q Consensus 29 ~~~~L~kViewc~~H~~ 45 (72)
.+.+|++.|+|..+.+.
T Consensus 43 K~sIL~~aI~yik~Lq~ 59 (71)
T 4h10_B 43 KSTVLQKSIDFLRKHKE 59 (71)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47889999998877654
No 48
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=21.56 E-value=77 Score=18.61 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHHcCCC
Q 040579 9 VFEHMIEDDCAVDRIPLPNVTIKIFYKAIKYCNKHDEA 46 (72)
Q Consensus 9 ~f~~~i~~~~~~~~IplpnV~~~~L~kViewc~~H~~~ 46 (72)
.|+..|+++.+.. |++++.....+=.||.+|...
T Consensus 6 ~f~~~L~~L~~~k----~~~S~~~I~~LT~~a~~~~~~ 39 (145)
T 3d9j_A 6 TFNSELYSLNDYK----PPISKAKMTQITKAAIKAIKF 39 (145)
T ss_dssp HHHHHHHGGGGSC----SSCCHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhcc----CCCcHHHHHHHHHHHHHHHHH
Confidence 4556666653222 469999999999999999753
No 49
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=21.42 E-value=57 Score=17.91 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHH-HcCC
Q 040579 27 NVTIKIFYKAIKYCN-KHDE 45 (72)
Q Consensus 27 nV~~~~L~kViewc~-~H~~ 45 (72)
...-..|.+||+|+. .|..
T Consensus 7 ~~~f~~lakiV~~mK~rh~~ 26 (81)
T 1d8j_A 7 GYKFGVLAKIVNYMKTRHQR 26 (81)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred ccceehHHHHHHHHHHhhcc
Confidence 356789999999999 5654
No 50
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=21.28 E-value=84 Score=17.17 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC
Q 040579 26 PNVTIKIFYKAIKYCNKHDE 45 (72)
Q Consensus 26 pnV~~~~L~kViewc~~H~~ 45 (72)
.+++..+.+++..+|+.+.-
T Consensus 43 ~D~~~~~~~~i~~~c~~~~v 62 (101)
T 3v7q_A 43 EDASSNTAKKVTDKCNYYKV 62 (101)
T ss_dssp TTSCHHHHHHHHHHHHHTTC
T ss_pred ccccccchhhhcccccccCC
Confidence 47999999999999998753
No 51
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=20.59 E-value=82 Score=17.40 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 040579 26 PNVTIKIFYKAIKYCNKHD 44 (72)
Q Consensus 26 pnV~~~~L~kViewc~~H~ 44 (72)
.+.+..+.++|..||+.|.
T Consensus 46 ~D~~~~~~~~i~~~c~~~~ 64 (105)
T 3u5e_c 46 ANTPVLRKSELEYYAMLSK 64 (105)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 4788899999999999884
No 52
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Probab=20.54 E-value=30 Score=20.92 Aligned_cols=9 Identities=33% Similarity=0.770 Sum_probs=7.1
Q ss_pred HHHHHHcCC
Q 040579 37 IKYCNKHDE 45 (72)
Q Consensus 37 iewc~~H~~ 45 (72)
-+||+.|--
T Consensus 99 a~Wc~k~g~ 107 (138)
T 1m0d_A 99 GEFCEKHGI 107 (138)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHcCC
Confidence 489999954
No 53
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=20.20 E-value=31 Score=19.01 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=13.8
Q ss_pred eecCChhHHH----HHHH---hcCC--CCcccCC
Q 040579 2 LKSSDGEVFE----HMIE---DDCA--VDRIPLP 26 (72)
Q Consensus 2 L~SsDg~~f~----~~i~---~~~~--~~~Iplp 26 (72)
|.|.|-...+ .+++ ..+. .+|||||
T Consensus 15 L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPipLP 48 (87)
T 3d3c_J 15 LKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLP 48 (87)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEECCHHHHHHHHHHHHHHHHHhCCccCCCCCCC
Confidence 5666666666 2222 2222 3688888
Done!