BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040580
(412 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255541504|ref|XP_002511816.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548996|gb|EEF50485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 427
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 274/412 (66%), Positives = 338/412 (82%), Gaps = 7/412 (1%)
Query: 8 LHGSFKFK--RFNVPSHQTHPKNGDLARKII-RYRKQEGF----VDCASLVEDLGRKKKP 60
L GS K K RF + S Q P N LARKII ++++ + F VDCASLV++L K+ P
Sbjct: 16 LGGSLKRKMGRFRLFSSQRDPTNRPLARKIIYQWKQDQSFSCKEVDCASLVQNLHSKRTP 75
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
HLA +++ +KS+G + +N TL A++LCYA+NG + +AQ +W+ +L+ SF S+Q++S L
Sbjct: 76 HLAQEILLEMKSQGYVLNNPTLSAILLCYADNGLLPQAQAIWKHMLNGSFTPSIQIVSRL 135
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+DAY + G FNE+++I+DQ+S N LL E YS AISCFGK GQL+LMEN LK+MV RGF
Sbjct: 136 IDAYSKKGHFNEVMNILDQLSYSNFSLLHEAYSLAISCFGKGGQLQLMENALKDMVLRGF 195
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
VD ATGNAFI YYS GSLT+ME+AY RLKRSRHL+D+EGIRAVS Y+KERKF+ LGE
Sbjct: 196 PVDYATGNAFIRYYSIHGSLTDMESAYSRLKRSRHLVDREGIRAVSLAYVKERKFYRLGE 255
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
FLRDVGLGRKD+GNL+WN LLLS+A NFKMKSLQREF+RM EAGFHPD+TTFNIRA+AFS
Sbjct: 256 FLRDVGLGRKDVGNLIWNFLLLSFAANFKMKSLQREFLRMLEAGFHPDVTTFNIRALAFS 315
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVST 360
RMS+ WDLHL+LEHMKHE V PD+VTYGC+VDAYLD+RLG+NLDF + KMNLD SPV+ T
Sbjct: 316 RMSLLWDLHLTLEHMKHEKVSPDIVTYGCIVDAYLDRRLGKNLDFAIKKMNLDGSPVLLT 375
Query: 361 DPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRNQIFWNY 412
DP+VFE GKGDFHSS+EAFLEFKRQRKWTYR+L+++YL+KQ R NQIFWNY
Sbjct: 376 DPFVFEVLGKGDFHSSAEAFLEFKRQRKWTYRELVSIYLRKQYRSNQIFWNY 427
>gi|224118746|ref|XP_002331436.1| predicted protein [Populus trichocarpa]
gi|222873650|gb|EEF10781.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 279/411 (67%), Positives = 338/411 (82%), Gaps = 8/411 (1%)
Query: 10 GSFKFKRFNVPSHQTHPKNGDLARKIIRYRK-------QEGFVDCASLVEDLGRKKKPHL 62
GS+K KRF + S + PK LA+K+IR K +E DCASL++ L + ++PHL
Sbjct: 18 GSYKPKRFAIFSIKRDPKKRALAQKMIRQWKRDQGVFGKETCADCASLIQTLCKHRRPHL 77
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ +K EG LPDN TL A+MLCYA++G + +AQ +WEE+L SSFV SVQV+SDL+D
Sbjct: 78 AEELLLELKCEGFLPDNRTLSAMMLCYADSGLLPQAQAIWEEMLYSSFVPSVQVISDLID 137
Query: 123 AYGRIGCFNEIISIIDQVSC-RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
Y + G F+E+I I+DQ+S R D LP+VYS AISCFGK GQLELME+TLK+MVS+GF
Sbjct: 138 IYAKSGLFDEVIKILDQLSSLRTFDFLPQVYSLAISCFGKGGQLELMEDTLKKMVSKGFW 197
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
VDSATGNAF++YYS GSL EME AY RLKRSR LI++EGIRA+SF Y+KERKF+ L EF
Sbjct: 198 VDSATGNAFVVYYSLHGSLAEMEAAYDRLKRSRLLIEREGIRAMSFAYIKERKFYGLSEF 257
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
LRDVGLGRK+LGNL+WNLLLLSY+ NFKMK+LQREF+ M EAGFHPDLTTFNIRA+AFSR
Sbjct: 258 LRDVGLGRKNLGNLIWNLLLLSYSANFKMKTLQREFLNMLEAGFHPDLTTFNIRALAFSR 317
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTD 361
MS+ WDLHL LEHMKH+ V PDLVTYGC+VDAYLD+RL RNL+F LSKM++D+SPV+STD
Sbjct: 318 MSLLWDLHLGLEHMKHDKVAPDLVTYGCIVDAYLDRRLVRNLEFALSKMHVDNSPVLSTD 377
Query: 362 PYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRNQIFWNY 412
P+VFE FGKGDFHSSSEAF+EFKRQRKWTYR+LI +YL+KQ R IFWNY
Sbjct: 378 PFVFEVFGKGDFHSSSEAFMEFKRQRKWTYRELIKIYLRKQHRSKHIFWNY 428
>gi|225445658|ref|XP_002265876.1| PREDICTED: pentatricopeptide repeat-containing protein At3g42630
[Vitis vinifera]
gi|297736023|emb|CBI24061.3| unnamed protein product [Vitis vinifera]
Length = 423
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 280/414 (67%), Positives = 334/414 (80%), Gaps = 7/414 (1%)
Query: 6 LSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQE-------GFVDCASLVEDLGRKK 58
L L GS K +RF V HQ + N LARK+ + KQE +VD L++ L RK+
Sbjct: 10 LCLIGSHKTQRFRVSLHQNYSPNRALARKLFWHWKQERSVDGKDNYVDYTPLIQALSRKR 69
Query: 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
PH+A +L+ +KSEG LP+NSTL ALMLCYA+NG +AQ +W+E+++SSF ++Q++S
Sbjct: 70 LPHVAQELLFEMKSEGFLPNNSTLSALMLCYADNGLFPKAQALWDEIINSSFGPNIQIVS 129
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+DAYG++G F E+ I+ QVS R+ + + EVYS AISCFGK GQLE+MEN LKEMVSR
Sbjct: 130 KLIDAYGKMGHFGEVTRILHQVSSRDFNFMHEVYSLAISCFGKGGQLEMMENALKEMVSR 189
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF VDSATGNAFI YYS FGSLTEME AY RLK+SR LI++EGIRA+SF Y+KE+K++ L
Sbjct: 190 GFPVDSATGNAFIRYYSIFGSLTEMEAAYDRLKKSRILIEEEGIRAMSFAYIKEKKYYRL 249
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
G+FLRDVGLGRK++GNLLWNLLLLSYA NFKMKSLQREF+ M EAGF PDLTTFNIRA+A
Sbjct: 250 GQFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLEMVEAGFAPDLTTFNIRALA 309
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVV 358
FSRMS+FWDLHLSLEHM+H V DLVTYGCVVDAYLD+RLG+NLDF L KMN+DDSP+V
Sbjct: 310 FSRMSLFWDLHLSLEHMQHVKVVADLVTYGCVVDAYLDRRLGKNLDFALKKMNMDDSPLV 369
Query: 359 STDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRNQIFWNY 412
STD +VFE GKGDFHSSSEAFLE KR KWTYRKLIA YLKK+ R NQIFWNY
Sbjct: 370 STDHFVFEVLGKGDFHSSSEAFLESKRNGKWTYRKLIATYLKKKYRSNQIFWNY 423
>gi|449470370|ref|XP_004152890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g42630-like [Cucumis sativus]
gi|449507537|ref|XP_004163059.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g42630-like [Cucumis sativus]
Length = 388
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/368 (66%), Positives = 307/368 (83%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
++ + +++ L R++ P LA ++ +KSEG +NSTL +M+ Y ++G L+AQ +WEE
Sbjct: 21 INNSQVIKKLSRRRMPILAKEIFLELKSEGFPLNNSTLSTIMVHYIDDGSPLQAQAMWEE 80
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
+L+S F SVQV+S L +AYG++G F+ I ++DQV R + LLPE YS AISCFGK Q
Sbjct: 81 MLNSCFEPSVQVISKLFNAYGKMGHFDYITKVLDQVKLRYSHLLPEAYSLAISCFGKHKQ 140
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
LELME+TL+EMVS GF+V+SATGN+FIIYYS FGSL EMETAYGRLKRSR LI+K+GI A
Sbjct: 141 LELMESTLREMVSSGFTVNSATGNSFIIYYSMFGSLVEMETAYGRLKRSRFLIEKKGIMA 200
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
++F Y+++RKF+ LGEFLRDVGLGRK++GNLLWNLLLLSYA NFKMKSLQREF++M +AG
Sbjct: 201 MAFAYIRKRKFYRLGEFLRDVGLGRKNVGNLLWNLLLLSYAANFKMKSLQREFLQMVDAG 260
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
F+PDLTTFNIRA+AFSRM + WDLHLSLEHMKH ++ PDLVTYGCVVDAY+D+RLGRNL+
Sbjct: 261 FNPDLTTFNIRALAFSRMDLLWDLHLSLEHMKHMNIEPDLVTYGCVVDAYVDRRLGRNLE 320
Query: 345 FGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLR 404
F LSKMN D PV TD +VFEA GKGDFH SSEAF++F++Q+KWTYR+LI++YLKK R
Sbjct: 321 FILSKMNPDQPPVSLTDSFVFEALGKGDFHMSSEAFMQFRKQKKWTYRELISLYLKKHHR 380
Query: 405 RNQIFWNY 412
RNQ+FWNY
Sbjct: 381 RNQVFWNY 388
>gi|75223628|gb|ABA18111.1| pentatricopeptide repeat protein [Arabidopsis arenosa]
Length = 419
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/419 (57%), Positives = 313/419 (74%), Gaps = 7/419 (1%)
Query: 1 METFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIR-------YRKQEGFVDCASLVED 53
M + +LS H S K + + S T +ARK+I+ + ++ VD A LV+
Sbjct: 1 MFSLNLSHHLSLKPQHLKLLSCYTDSSAPSIARKLIKESKLSREFSRKIQIVDYAPLVQT 60
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
L +++ P +AH++ KS LLP+ TLCALMLC+A NGFVL A+ +W+E+L+SSFV
Sbjct: 61 LSQRRLPDVAHEIFIQTKSVNLLPNYRTLCALMLCFAENGFVLRARTIWDEILNSSFVPD 120
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
V V+S L+ AY ++G F+E+ I V+ R++ LLP VYS AISCFGK GQLELME ++
Sbjct: 121 VFVVSKLISAYEQLGFFDEVAKITKDVAARHSTLLPVVYSLAISCFGKNGQLELMEGVIE 180
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
EM S+G S+DSAT NA + Y+S FG+L ++E AYGRLK+ +I++E IRAV YLK+R
Sbjct: 181 EMDSKGMSLDSATANAIVRYFSFFGTLDKIEHAYGRLKKFGIVIEEEEIRAVLLAYLKQR 240
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
KF+ L EFL DVGLGR++LGN+LWN +LLSYA FKMKSLQREF+ M +AGF PDLTTFN
Sbjct: 241 KFYRLREFLSDVGLGRRNLGNMLWNSVLLSYAAEFKMKSLQREFIEMLDAGFSPDLTTFN 300
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLD 353
IRA+AFSRM++FWDLHL+LEHM+ ++ PDLVT+GCVVDAY+DKRL RNL+F ++MNLD
Sbjct: 301 IRALAFSRMALFWDLHLTLEHMRRLNIVPDLVTFGCVVDAYMDKRLARNLEFVYNQMNLD 360
Query: 354 DSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRNQIFWNY 412
DSPVV TDP FE GKGDFH SSEA LEF ++ WTYRKLI VY+KK+LRR+QIFWNY
Sbjct: 361 DSPVVLTDPLAFEVLGKGDFHLSSEAVLEFSTEKNWTYRKLIGVYVKKKLRRDQIFWNY 419
>gi|297815394|ref|XP_002875580.1| pentatricopeptide repeat protein [Arabidopsis lyrata subsp. lyrata]
gi|297321418|gb|EFH51839.1| pentatricopeptide repeat protein [Arabidopsis lyrata subsp. lyrata]
Length = 419
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/419 (57%), Positives = 312/419 (74%), Gaps = 7/419 (1%)
Query: 1 METFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIR-------YRKQEGFVDCASLVED 53
M + +LS S K + + S T +ARK+I+ + ++ VD A LV+
Sbjct: 1 MFSLNLSHPQSLKPQHLKLLSCYTDLSAPSIARKLIKESKLSRDFSRKIQIVDYAPLVQT 60
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
L +++ P +AH++ KS LLP+ TLCAL LC+A NGFVL A+++W+ +L+SSFV
Sbjct: 61 LSQRRLPDVAHEIFIQTKSVNLLPNYRTLCALTLCFAENGFVLRARMIWDGILNSSFVPD 120
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
V V+S LM AY ++GCF+E+ I V+ R++ LLP VYS AISCFGK GQLELME ++
Sbjct: 121 VFVVSKLMSAYEQVGCFDEVAKITKDVAARHSKLLPVVYSVAISCFGKNGQLELMEGVIE 180
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
EM +G S+DSAT NA + Y+S FG+L ++E AYGRLK+ +I++E IRAV YLK+R
Sbjct: 181 EMDLKGISLDSATANAIVRYFSFFGTLDKLEQAYGRLKKFGIVIEEEEIRAVLLAYLKQR 240
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
KF+ L EFL DVGLGR++LGN+LWN +LLSYA +FKMKSLQREF+ M +AGF PDLTTFN
Sbjct: 241 KFYRLREFLSDVGLGRRNLGNMLWNSVLLSYAADFKMKSLQREFIGMLDAGFSPDLTTFN 300
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLD 353
IRA+AFSRM++FWD+HL+LEHM+ ++ PDLVT+GCVVDAY+DKRL RNL+F ++MNLD
Sbjct: 301 IRALAFSRMALFWDIHLTLEHMRRLNIVPDLVTFGCVVDAYMDKRLARNLEFVYNQMNLD 360
Query: 354 DSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRNQIFWNY 412
DSPVV TDP FE GKGDFH SSEA LEF ++ WTYRKLI VYLKK+LRR+QIFWNY
Sbjct: 361 DSPVVLTDPLAFEVLGKGDFHLSSEAVLEFSPRKNWTYRKLIGVYLKKKLRRDQIFWNY 419
>gi|42565361|ref|NP_566863.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546757|sp|Q9M2A1.2|PP263_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g42630
gi|332644221|gb|AEE77742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 415
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/414 (56%), Positives = 307/414 (74%), Gaps = 7/414 (1%)
Query: 6 LSLHGSFKFKRFNVPSHQTHPKNGDLARKIIR-------YRKQEGFVDCASLVEDLGRKK 58
LSL+ S K + + S T +A+K+I+ + ++ VD A LV+ L +++
Sbjct: 2 LSLNLSLKPQHLKLLSCYTDSSAPSIAKKLIKESKLSRDFSQKIQIVDYAPLVQTLSQRR 61
Query: 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
P +AH++ KS LLP+ TLCALMLC+A NGFVL A+ +W+E+++S FV V V+S
Sbjct: 62 LPDVAHEIFLQTKSVNLLPNYRTLCALMLCFAENGFVLRARTIWDEIINSCFVPDVFVVS 121
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+ AY + GCF+E+ I V+ R++ LLP V S AISCFGK GQLELME ++EM S+
Sbjct: 122 KLISAYEQFGCFDEVAKITKDVAARHSKLLPVVSSLAISCFGKNGQLELMEGVIEEMDSK 181
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
G +++ T N + YYS FGSL +ME AYGR+K+ +I++E IRAV YLK+RKF+ L
Sbjct: 182 GVLLEAETANVIVRYYSFFGSLDKMEKAYGRVKKFGIVIEEEEIRAVVLAYLKQRKFYRL 241
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
EFL DVGLGR++LGN+LWN +LLSYA +FKMKSLQREF+ M +AGF PDLTTFNIRA+A
Sbjct: 242 REFLSDVGLGRRNLGNMLWNSVLLSYAADFKMKSLQREFIGMLDAGFSPDLTTFNIRALA 301
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVV 358
FSRM++FWDLHL+LEHM+ ++ PDLVT+GCVVDAY+DKRL RNL+F ++MNLDDSP+V
Sbjct: 302 FSRMALFWDLHLTLEHMRRLNIVPDLVTFGCVVDAYMDKRLARNLEFVYNRMNLDDSPLV 361
Query: 359 STDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRNQIFWNY 412
TDP FE GKGDFH SSEA LEF ++ WTYRKLI VYLKK+LRR+QIFWNY
Sbjct: 362 LTDPLAFEVLGKGDFHLSSEAVLEFSPRKNWTYRKLIGVYLKKKLRRDQIFWNY 415
>gi|75214625|gb|ABA18097.1| pentatricopeptide repeat protein [Olimarabidopsis pumila]
Length = 424
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/409 (57%), Positives = 305/409 (74%), Gaps = 7/409 (1%)
Query: 11 SFKFKRFNVPSHQTHPKNGDLARKIIR-------YRKQEGFVDCASLVEDLGRKKKPHLA 63
S K + + S T +ARK+I+ + ++ VD ASLV+ L +++ P +A
Sbjct: 16 SLKPQNLKLLSCYTDSSTPSIARKLIKDSKLCRVFSRKIQIVDYASLVQTLSQRRLPEVA 75
Query: 64 HQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123
+++ K + LLP+ TLCALMLC+A NGFVL A+++W+E+L+SSFV + V+S L+ A
Sbjct: 76 YEIFIQTKLDNLLPNYRTLCALMLCFAENGFVLRARMIWDEMLNSSFVPDLLVISKLVFA 135
Query: 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
Y ++GCF+E++ II V R + LLP VYS ISCFG+ GQ ELME ++E+ RG +D
Sbjct: 136 YEKVGCFDEVVKIIKDVDQRYSKLLPVVYSLGISCFGENGQFELMEGIIEELDLRGMLLD 195
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
S T NA + YYS G+L +ME AYGRL++ +I++E IRAV YLK+RKF+ L EFL
Sbjct: 196 SVTANAIVRYYSSSGNLEKMEKAYGRLRKFGVVIEEEEIRAVLLAYLKQRKFYRLREFLS 255
Query: 244 DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
DVGL R++LGNLLWN +LLSYA +FKMKSLQREF+ M +AGF PDLTTFNIRA+AFSRM+
Sbjct: 256 DVGLCRRNLGNLLWNSVLLSYAADFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMA 315
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY 363
+FWDLHL+LEHM+ ++ PDLVT+GCVVDAY+D+RL RNL+F ++MNLDDSPVV TDP
Sbjct: 316 LFWDLHLTLEHMRRLNIVPDLVTFGCVVDAYMDRRLARNLEFVYNRMNLDDSPVVLTDPL 375
Query: 364 VFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRNQIFWNY 412
VFE GKGDFH SSEA LEF + KWTYRKLI VYLKK+LRR+QIFWNY
Sbjct: 376 VFEVLGKGDFHLSSEAVLEFSPREKWTYRKLIGVYLKKKLRRDQIFWNY 424
>gi|7523388|emb|CAB86446.1| putative protein [Arabidopsis thaliana]
Length = 412
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/411 (56%), Positives = 305/411 (74%), Gaps = 4/411 (0%)
Query: 6 LSLHGSFKFKRFNVPSHQTHPKNGDLARKIIR----YRKQEGFVDCASLVEDLGRKKKPH 61
LSL+ S K + + S T +A+K + + ++ VD A LV+ L +++ P
Sbjct: 2 LSLNLSLKPQHLKLLSCYTDSSAPSIAKKESKLSRDFSQKIQIVDYAPLVQTLSQRRLPD 61
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
+AH++ KS LLP+ TLCALMLC+A NGFVL A+ +W+E+++S FV V V+S L+
Sbjct: 62 VAHEIFLQTKSVNLLPNYRTLCALMLCFAENGFVLRARTIWDEIINSCFVPDVFVVSKLI 121
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
AY + GCF+E+ I V+ R++ LLP V S AISCFGK GQLELME ++EM S+G
Sbjct: 122 SAYEQFGCFDEVAKITKDVAARHSKLLPVVSSLAISCFGKNGQLELMEGVIEEMDSKGVL 181
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
+++ T N + YYS FGSL +ME AYGR+K+ +I++E IRAV YLK+RKF+ L EF
Sbjct: 182 LEAETANVIVRYYSFFGSLDKMEKAYGRVKKFGIVIEEEEIRAVVLAYLKQRKFYRLREF 241
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
L DVGLGR++LGN+LWN +LLSYA +FKMKSLQREF+ M +AGF PDLTTFNIRA+AFSR
Sbjct: 242 LSDVGLGRRNLGNMLWNSVLLSYAADFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSR 301
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTD 361
M++FWDLHL+LEHM+ ++ PDLVT+GCVVDAY+DKRL RNL+F ++MNLDDSP+V TD
Sbjct: 302 MALFWDLHLTLEHMRRLNIVPDLVTFGCVVDAYMDKRLARNLEFVYNRMNLDDSPLVLTD 361
Query: 362 PYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRNQIFWNY 412
P FE GKGDFH SSEA LEF ++ WTYRKLI VYLKK+LRR+QIFWNY
Sbjct: 362 PLAFEVLGKGDFHLSSEAVLEFSPRKNWTYRKLIGVYLKKKLRRDQIFWNY 412
>gi|75214757|gb|ABA18107.1| pentatricopeptide repeat protein [Capsella rubella]
Length = 411
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/389 (57%), Positives = 290/389 (74%), Gaps = 7/389 (1%)
Query: 31 LARKIIR-------YRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC 83
+ARK+I+ + ++ VD A LV++L ++ P +A+++ KS+ LLP+ TLC
Sbjct: 23 IARKLIKESKLSRVFSRKIQSVDYAPLVQNLSQRTLPDVAYEIFIQSKSDNLLPNYRTLC 82
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
ALMLC+A NGFV A+ +W+E+L+SS + +S L+ AY ++G +E+ II V R
Sbjct: 83 ALMLCFAENGFVNRARTIWDEMLNSSLEPDLIFISKLISAYVKVGSLDEVAKIIKDVEAR 142
Query: 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
+ LLP VYS A+SCFG+ GQ ELM+ ++E+ RG +DSAT NA + +YS FG+L +M
Sbjct: 143 YSKLLPSVYSLAVSCFGENGQFELMDGIIEELDIRGMPLDSATANAIVRHYSSFGTLDKM 202
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLS 263
E AYGRL++ +I+ E IRAV YLK RKF+ L EFL DVGL R++LGNLLWN +LLS
Sbjct: 203 EHAYGRLRKFGIVIEDEEIRAVLLAYLKLRKFYRLREFLSDVGLCRRNLGNLLWNSVLLS 262
Query: 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
YA +FKMKSLQREF+ M +AGF PDLTTFNIRA+AFSRM++FWDLHL+LEHM+ ++ PD
Sbjct: 263 YAADFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPD 322
Query: 324 LVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEF 383
LVT+GCVVDAY+D+RL RNL+F ++MNLDDSP V TDP FE GKGDFH SSEA LEF
Sbjct: 323 LVTFGCVVDAYMDRRLARNLEFVYNRMNLDDSPAVLTDPLAFEVLGKGDFHLSSEAVLEF 382
Query: 384 KRQRKWTYRKLIAVYLKKQLRRNQIFWNY 412
+ KWTYRKLI VYLKK+LRR+QIFWNY
Sbjct: 383 SPRTKWTYRKLIGVYLKKKLRRDQIFWNY 411
>gi|147860572|emb|CAN79718.1| hypothetical protein VITISV_012741 [Vitis vinifera]
Length = 446
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 252/443 (56%), Positives = 302/443 (68%), Gaps = 75/443 (16%)
Query: 6 LSLHGSFKFKRFNVPSHQTHPKNGDLARK-----------------------------II 36
L L GS K +RF V HQ + N LARK +
Sbjct: 43 LCLIGSHKTQRFRVSLHQNYSPNRALARKAEEQDQGVSEVKDHEQLQKDFFLMDRLTELF 102
Query: 37 RYRKQE-------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+ KQE +VD L++ L RK+ PH+A +L+ +KSE
Sbjct: 103 WHWKQERSVDGKDNYVDYTPLIQALSRKRLPHVAQELLFEMKSE---------------- 146
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
+NG +AQ +W+E+++SSF ++Q++S L+DAYG++G F E+ I+ Q
Sbjct: 147 -DNGLFPKAQALWDEIINSSFGPNIQIVSKLIDAYGKMGHFGEVTRILHQ---------- 195
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
GQLE+MEN LKEMVSRGF VDSATGNAFI YYS FGSLTEME AY R
Sbjct: 196 ------------GGQLEMMENALKEMVSRGFPVDSATGNAFIRYYSIFGSLTEMEAAYDR 243
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
LK+SR LI++EGIRA+SF Y+KE+K++ LG+FLRDVGLGRK++GNLLWNLLLLSYA NFK
Sbjct: 244 LKKSRILIEEEGIRAMSFAYIKEKKYYRLGQFLRDVGLGRKNVGNLLWNLLLLSYAANFK 303
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
MKSLQREF+ M EAGF PDLTTFNIRA+AFSRMS+FWDLHLSLEHM+H V DLVTYGC
Sbjct: 304 MKSLQREFLEMVEAGFAPDLTTFNIRALAFSRMSLFWDLHLSLEHMQHVKVVADLVTYGC 363
Query: 330 VVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKW 389
VVDAYLD+RLG+NLDF L KMN+DDSP+VSTD +VFE GKGDFHSSSEAFLE KR KW
Sbjct: 364 VVDAYLDRRLGKNLDFALKKMNMDDSPLVSTDHFVFEVLGKGDFHSSSEAFLESKRNGKW 423
Query: 390 TYRKLIAVYLKKQLRRNQIFWNY 412
TYRKLIA YLKK+ R NQIFWNY
Sbjct: 424 TYRKLIATYLKKKYRSNQIFWNY 446
>gi|14190373|gb|AAK55667.1|AF378864_1 AT3g42630/T12K4_80 [Arabidopsis thaliana]
gi|16323278|gb|AAL15373.1| AT3g42630/T12K4_80 [Arabidopsis thaliana]
Length = 327
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/327 (62%), Positives = 260/327 (79%)
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
MLC+A NGFVL A+ +W+E+++S FV V V+S L+ AY + GCF+E+ I V+ R++
Sbjct: 1 MLCFAENGFVLRARTIWDEIINSCFVPDVFVVSKLISAYEQFGCFDEVAKITKDVAARHS 60
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
LLP V S AISCFGK GQLELME ++EM S+G +++ T N + YYS FGSL +ME
Sbjct: 61 KLLPVVSSLAISCFGKNGQLELMEGVIEEMDSKGVLLEAETANVIVRYYSFFGSLDKMEK 120
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
AYGR+K+ +I++E IRAV YLK+RKF+ L EFL DVGLGR++LGN+LWN +LLSYA
Sbjct: 121 AYGRVKKFGIVIEEEEIRAVVLAYLKQRKFYRLREFLSDVGLGRRNLGNMLWNSVLLSYA 180
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+FKMKSLQREF+ M +AGF PDLTTFNIRA+AFSRM++FWDLHL+LEHM+ ++ PDLV
Sbjct: 181 ADFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDLV 240
Query: 326 TYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKR 385
T+GCVVDAY+DKRL RNL+F ++MNLDDSP+V TDP FE GKGDFH SSEA LEF
Sbjct: 241 TFGCVVDAYMDKRLARNLEFVYNRMNLDDSPLVLTDPLAFEVLGKGDFHLSSEAVLEFSP 300
Query: 386 QRKWTYRKLIAVYLKKQLRRNQIFWNY 412
++ WTYRKLI VYLKK+LRR+QIFWNY
Sbjct: 301 RKNWTYRKLIGVYLKKKLRRDQIFWNY 327
>gi|357490321|ref|XP_003615448.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355516783|gb|AES98406.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 310
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 193/327 (59%), Positives = 242/327 (74%), Gaps = 18/327 (5%)
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
ML Y N ++Q WE+LL+SS+ S+ +S L +Y + FNEII+I+ +S +
Sbjct: 1 MLHYTENALFHQSQSTWEQLLNSSYNPSLHFISKLFKSYTKQNKFNEIINILHSLSSKKL 60
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
LLP+ YS AISCFG G+++LME T+ EMVS+GF +DS TGN ++ YS FGSL EME
Sbjct: 61 TLLPQFYSLAISCFGAAGKVKLMEETIDEMVSKGFQIDSKTGNEILLCYSVFGSLNEMEN 120
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
AYGR KRSR LI++ IRA+S+ YLK+RKF+ LG+F+RDVGLGR+++GNLLWNLLLLSY+
Sbjct: 121 AYGRFKRSRFLIEENVIRAMSYGYLKKRKFYELGQFVRDVGLGRRNVGNLLWNLLLLSYS 180
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
NFKMKSLQREF+RM E GF PD+TTFNIRA+AFSRM V DLV
Sbjct: 181 ANFKMKSLQREFVRMVELGFRPDVTTFNIRALAFSRM-----------------VVSDLV 223
Query: 326 TYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFK- 384
TYGCVVDAYLD+R GRNL+F L+KM++DD P + TDP+VFE GKGDFH SSEAF+E K
Sbjct: 224 TYGCVVDAYLDRRHGRNLEFVLNKMDVDDCPWLLTDPFVFEVLGKGDFHLSSEAFMECKT 283
Query: 385 RQRKWTYRKLIAVYLKKQLRRNQIFWN 411
+Q +W+YR LI YLKKQ R +QIFWN
Sbjct: 284 QQHEWSYRVLIKKYLKKQHRMDQIFWN 310
>gi|326510199|dbj|BAJ87316.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524816|dbj|BAK04344.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 418
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 170/317 (53%), Positives = 228/317 (71%), Gaps = 2/317 (0%)
Query: 98 AQVVWEELL-SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
AQ +W +LL SS+ L+ AY R G ++E++ ++S R+ ++Y A+
Sbjct: 102 AQSIWAQLLLSSAAPCLAAAAPRLLPAYARAGRYDEVLLAARELSARDPAAARDLYPLAV 161
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
SC G G+L LME+ ++EM G VDSATGNAF+ +Y+ FG++ EME A GRLK+S L
Sbjct: 162 SCLGAAGELALMEDAVQEMARAGLRVDSATGNAFVRHYAAFGTVPEMEAAVGRLKKSGLL 221
Query: 217 IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276
I + IRAV+ +Y+ RK++ LGEF+R VGLGR++ GN+LWNL LLS+A NFKMKSLQR
Sbjct: 222 ISVDAIRAVASSYIAHRKYYKLGEFVRGVGLGRRNAGNMLWNLYLLSFAANFKMKSLQRA 281
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F+ M+ AG+ PDLTTFNIRA AFS+M MFWDLHL+ EHM+ + V PDLVT+GC VDAY++
Sbjct: 282 FLEMTAAGYRPDLTTFNIRAAAFSKMCMFWDLHLTAEHMRRDGVAPDLVTHGCFVDAYME 341
Query: 337 KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFK-RQRKWTYRKLI 395
+RL RN+ F +++ PVV+TD VFEAFGKG FH++SEA LE +R+WTY L+
Sbjct: 342 RRLARNISFAFRRLDGAGEPVVATDGVVFEAFGKGGFHATSEALLEAAGGKRRWTYYDLL 401
Query: 396 AVYLKKQLRRNQIFWNY 412
VYL+KQ R+NQIFWNY
Sbjct: 402 GVYLRKQHRKNQIFWNY 418
>gi|242082183|ref|XP_002445860.1| hypothetical protein SORBIDRAFT_07g027040 [Sorghum bicolor]
gi|241942210|gb|EES15355.1| hypothetical protein SORBIDRAFT_07g027040 [Sorghum bicolor]
Length = 335
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/332 (51%), Positives = 229/332 (68%), Gaps = 2/332 (0%)
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD-LMDAYGRIGCFNEIISIIDQVS 141
ALM+ A G EA+ +W +LL SS + + L+ AY R+G F+EI+ + ++S
Sbjct: 4 AALMVARAEAGDFAEARSLWAQLLHSSAAQCLPAAAPRLLPAYARLGRFDEILLAVRELS 63
Query: 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
R+ +Y A+SC G G+L ME+ + EM G VD+ATG+AF+ Y+ G++
Sbjct: 64 ARDRGAARALYPLAVSCLGAAGELARMEDVVLEMGRLGLRVDAATGDAFVRAYAAAGTIP 123
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
+ME AY R K++ L+ + IRAV+ Y+ ++K++ LG F+ D GL R+D GNLLWNL L
Sbjct: 124 QMEAAYRRHKKAGLLVTRGAIRAVASAYISQQKYYRLGAFVADAGLRRRDAGNLLWNLYL 183
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
LS+A NFKMKSLQR F+ M AGF PDLTTFNIRA AFS+M MFWDLHLS +HM+ + V
Sbjct: 184 LSFAANFKMKSLQRAFLEMVAAGFRPDLTTFNIRAAAFSKMCMFWDLHLSADHMRRDGVA 243
Query: 322 PDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFL 381
PDLVT+GC VDAYL++RL RNL F +++ + PVV+TD VFEAFGKG FH+SSE L
Sbjct: 244 PDLVTHGCFVDAYLERRLARNLTFAFDRLDGNAEPVVATDAIVFEAFGKGGFHASSEVLL 303
Query: 382 EFKR-QRKWTYRKLIAVYLKKQLRRNQIFWNY 412
E +R+WTY KL+ VYL+KQ RRNQ+FWNY
Sbjct: 304 EATAGKRRWTYYKLLGVYLRKQHRRNQVFWNY 335
>gi|414869523|tpg|DAA48080.1| TPA: hypothetical protein ZEAMMB73_542549 [Zea mays]
Length = 394
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 169/318 (53%), Positives = 221/318 (69%), Gaps = 2/318 (0%)
Query: 97 EAQVVWEELL-SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
EA+ +W +LL SS+ L+ AY R+G F+EI+ + ++S R+ +Y A
Sbjct: 77 EARSLWAQLLHSSAAPCLPAAAPRLLPAYARLGRFDEILHAVRELSARDRGAARALYPLA 136
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
+SC G G+L ME+ + EM G VDSATG+AF+ Y+ G++ +ME AY R ++S
Sbjct: 137 VSCLGAAGELARMEDAVLEMGRLGLRVDSATGDAFVRAYAAAGTIPQMEAAYRRHRKSGL 196
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
LI + IRAV+ Y+ +K++ LG F D GL R+D+GNLLWNL LLS+A NFKMKSLQR
Sbjct: 197 LITRGAIRAVASAYISRQKYYRLGAFAADAGLRRRDVGNLLWNLYLLSFAANFKMKSLQR 256
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
F+ M AGF PDLTTFNIR AFS+M MFWDLHLS +HM+ + V PDLVT+GC VDAYL
Sbjct: 257 AFLEMVAAGFRPDLTTFNIRTAAFSKMCMFWDLHLSADHMRRDGVAPDLVTHGCFVDAYL 316
Query: 336 DKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFK-RQRKWTYRKL 394
++RL RNL F +++ D PVV+TDP VFEAFGKG FH+SSE LE +R+WTY KL
Sbjct: 317 ERRLARNLTFAFDRLDGDGEPVVATDPIVFEAFGKGGFHASSEVLLETAGGKRRWTYYKL 376
Query: 395 IAVYLKKQLRRNQIFWNY 412
+ VYL+KQ RRNQ+FWNY
Sbjct: 377 LGVYLRKQHRRNQVFWNY 394
>gi|413945504|gb|AFW78153.1| hypothetical protein ZEAMMB73_905897 [Zea mays]
Length = 402
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 169/318 (53%), Positives = 220/318 (69%), Gaps = 2/318 (0%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSD-LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
EA +W +LL SS + ++ L+ AY R+G F+EI+ + ++S R+ +Y A
Sbjct: 85 EAWSLWAQLLHSSAAPCLPAVAPRLLPAYARLGRFDEILLAVRELSARDRGAARTLYPLA 144
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
+SC G G+L ME+ + EM G VDSATG+AF+ Y+ G++ +ME AY R ++S
Sbjct: 145 VSCLGAAGELARMEDAVLEMGRLGLRVDSATGDAFVRAYAAAGTIPQMEAAYRRHRKSGL 204
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
LI + IRAV+ Y+ +K++ LG F D GL R+D+GNLLWNL LLS A NFKMKSLQR
Sbjct: 205 LITRGAIRAVASAYISRQKYYRLGAFAADAGLRRRDVGNLLWNLYLLSSAANFKMKSLQR 264
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
F+ M AGF PDLTTFNIRA AFS+M MFWDLHLS +HM + V PDLVT+GC VDAYL
Sbjct: 265 AFLEMVAAGFRPDLTTFNIRAAAFSKMCMFWDLHLSADHMHRDGVAPDLVTHGCFVDAYL 324
Query: 336 DKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQR-KWTYRKL 394
++RL RNL F +++ D PVV+TDP VFEAFGKG FH+SSE LE + +WTY KL
Sbjct: 325 ERRLARNLTFAFDRLDGDAKPVVATDPIVFEAFGKGGFHASSEVLLETAGGKGRWTYYKL 384
Query: 395 IAVYLKKQLRRNQIFWNY 412
+ VYL+KQ RRNQ+FWNY
Sbjct: 385 LGVYLRKQHRRNQVFWNY 402
>gi|42408522|dbj|BAD09701.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42409170|dbj|BAD10436.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 393
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/318 (53%), Positives = 225/318 (70%), Gaps = 3/318 (0%)
Query: 97 EAQVVWEELL-SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
A+ +W +LL SS+ L+ AY R+G +E + ++ ++ R+ +Y A
Sbjct: 77 SARSMWAQLLHSSAAPRLRAAAPRLLPAYARLGRCDEALLVVRELCARDPGAARALYPLA 136
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
++CFG G+L LME+ ++EM G VDSATGNAF+ +Y+ G++ +ME AY RLK SR
Sbjct: 137 VTCFGAAGELALMEDAVREMARHGLPVDSATGNAFVCHYAASGTVPQMEAAYRRLKASRL 196
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
L+ IRA++ Y+ RK++ LGEF+ DVGLGR+ GNLLWNL LLS+A NFKMKSLQR
Sbjct: 197 LVSVAAIRAMASAYISHRKYYKLGEFVTDVGLGRRAGGNLLWNLYLLSFAANFKMKSLQR 256
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
F+ M AGF PDLTTFN+RAVAFS+M MFWDLHL+ +HM+ + V PDLVT+GC VDAYL
Sbjct: 257 AFLDMVAAGFTPDLTTFNLRAVAFSKMCMFWDLHLTADHMRRDGVAPDLVTHGCFVDAYL 316
Query: 336 DKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFK-RQRKWTYRKL 394
++RL RNL+F ++ + PVV+TD VFEAFGKG FH+SSE LE +R+WTY KL
Sbjct: 317 ERRLARNLNFAFDRLGAGE-PVVATDAVVFEAFGKGGFHASSEVLLEATGGERRWTYYKL 375
Query: 395 IAVYLKKQLRRNQIFWNY 412
+ VYL+KQ R+NQIFWNY
Sbjct: 376 LGVYLRKQHRKNQIFWNY 393
>gi|125562211|gb|EAZ07659.1| hypothetical protein OsI_29912 [Oryza sativa Indica Group]
Length = 393
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 169/318 (53%), Positives = 225/318 (70%), Gaps = 3/318 (0%)
Query: 97 EAQVVWEELL-SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
A+ +W +LL SS+ L+ AY R+G +E + ++ ++ R+ +Y A
Sbjct: 77 SARSMWAQLLHSSAAPRLRAAAPRLLPAYARLGRCDEALLVVRELCARDPGAARALYPLA 136
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
++CFG G+L LME+ ++EM G VDSATGNAF+ +Y+ G++ +ME AY RLK SR
Sbjct: 137 VTCFGAAGELALMEDAVREMARHGLPVDSATGNAFVCHYAASGTVPQMEAAYRRLKASRL 196
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
L+ IRA++ Y+ RK++ LGEF+ DVGLGR+ GNLLWNL LLS+A NFKMKSLQR
Sbjct: 197 LVSVADIRAMASAYISHRKYYKLGEFVTDVGLGRRAGGNLLWNLYLLSFAANFKMKSLQR 256
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
F+ M AGF PDLTTFN+RAVAFS+M MFWDLHL+ +HM+ + V PDLVT+GC VDAYL
Sbjct: 257 AFLDMVAAGFTPDLTTFNLRAVAFSKMCMFWDLHLTADHMRRDGVAPDLVTHGCFVDAYL 316
Query: 336 DKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFK-RQRKWTYRKL 394
++RL RNL+F ++ + PVV+TD VFEAFGKG FH+SSE LE +R+WTY KL
Sbjct: 317 ERRLARNLNFAFDRLGAGE-PVVATDAVVFEAFGKGGFHASSEVLLEATGGERRWTYYKL 375
Query: 395 IAVYLKKQLRRNQIFWNY 412
+ VYL+KQ R+NQIFWNY
Sbjct: 376 LGVYLRKQHRKNQIFWNY 393
>gi|125604036|gb|EAZ43361.1| hypothetical protein OsJ_27961 [Oryza sativa Japonica Group]
Length = 319
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/277 (49%), Positives = 182/277 (65%), Gaps = 27/277 (9%)
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ + R+ +Y A++CFG G+L LME+ ++EM G VDSATGNAF+ +Y+
Sbjct: 69 VGALCARDPGAARALYPLAVTCFGAAGELALMEDAVREMARHGLPVDSATGNAFVCHYAA 128
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
G++ +ME AY RLK SR L+ IRA++ Y+ RK++ LGEF+ D
Sbjct: 129 SGTVPQMEAAYRRLKASRLLVSVAAIRAMASAYISHRKYYKLGEFVTD------------ 176
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
MKSLQR F+ M AGF PDLTTFN+RAVAFS+M MFWDLHL+ +HM+
Sbjct: 177 -------------MKSLQRAFLDMVAAGFTPDLTTFNLRAVAFSKMCMFWDLHLTADHMR 223
Query: 317 HESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSS 376
+ V PDLVT+GC VDAYL++RL RNL+F ++ + PVV+TD VFEAFGKG FH+S
Sbjct: 224 RDGVAPDLVTHGCFVDAYLERRLARNLNFAFDRLGAGE-PVVATDAVVFEAFGKGGFHAS 282
Query: 377 SEAFLEFK-RQRKWTYRKLIAVYLKKQLRRNQIFWNY 412
SE LE +R+WTY KL+ VYL+KQ R+NQIFWNY
Sbjct: 283 SEVLLEATGGERRWTYYKLLGVYLRKQHRKNQIFWNY 319
>gi|168057629|ref|XP_001780816.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667751|gb|EDQ54373.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 397
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 194/371 (52%), Gaps = 8/371 (2%)
Query: 38 YRKQEGFVDC----ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
+++Q+G+ C + LG+ + P A L + G+ P T L+ YA G
Sbjct: 12 WKQQDGYRPCELHYTKFIRMLGQARMPTEARALFIEMCGVGIRPSVVTYTCLLQSYAERG 71
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS 153
EA+++ E+++ S V + + LM AYG+ ++ + +++ Y
Sbjct: 72 QFEEAELILEDMILSVSWTYVFMCTGLMHAYGKYRMYDGMWRTFNRMKTGGVPPDEFAYR 131
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
I + + G + M+ KEM G DSAT NA Y+ G + EME Y L++
Sbjct: 132 TLIKAYAQGGLFDRMQLIAKEMSLDGMYADSATLNAVAQAYAEAGLVKEMEKHYEILRKY 191
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
+ ++ I+A+ +TY++ FF L +++ VGL R+ +GN LWN LLLS A NF M L
Sbjct: 192 SFIPNRTTIKAMVWTYVRNSLFFQLSRYVKRVGLKRRTMGNYLWNALLLSRAANFLMDDL 251
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ EF M AGF PD+TT NI A+A+SRM FWDLH + M++ + PDLVTYG V+D
Sbjct: 252 RVEFENMKFAGFFPDVTTCNIMAIAYSRMKRFWDLHELIITMQNNGIAPDLVTYGAVIDL 311
Query: 334 YLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKGDFHSSSEAF---LEFKRQRKW 389
++ L L L + NLD + TDP VFE FG+G F + E +E + +
Sbjct: 312 FIGADLRPKLLEELVEFRNLDVLAEMGTDPLVFEVFGRGGFLVACETLVRNMEGQDMDQR 371
Query: 390 TYRKLIAVYLK 400
TY +LI YL+
Sbjct: 372 TYAELIGYYLQ 382
>gi|302765661|ref|XP_002966251.1| hypothetical protein SELMODRAFT_85839 [Selaginella moellendorffii]
gi|300165671|gb|EFJ32278.1| hypothetical protein SELMODRAFT_85839 [Selaginella moellendorffii]
Length = 358
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 193/345 (55%), Gaps = 2/345 (0%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
+ +PH A + + +++ + P AL+ YA +G V AQ + +L + +V
Sbjct: 4 KAGQPHAAQGVFDGMEAMQVRPSVVGFSALVQSYAESGEVEGAQSAMKRMLDTGIQPNVV 63
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
L+ AYG+ G F+E+ +++ + + VY I + G + M+ K M
Sbjct: 64 TYGGLIRAYGKRGLFDEMAKVVNTMKTVRCEPDFFVYKNVIEAYASGGLVGRMDKAFKAM 123
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
+ G+ DS N Y+ G + EME A G L+R + +E +RA + Y++ +F
Sbjct: 124 RADGWIPDSDILNLLAQGYASMGMIKEMEGAQGELRRIKGWPREESVRACALAYIRHNQF 183
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
+ + F++ +G+ R GNLLWNLLLL++A NF MKSLQRE + M A PD+TTFNIR
Sbjct: 184 YQMEGFVKSLGMKRIG-GNLLWNLLLLAHAANFSMKSLQREAVNMWSARCAPDVTTFNIR 242
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS 355
A+A SRM M WDLH+ ++HM+ ESV PDLVTYG +VDAY RL L L ++++ D+
Sbjct: 243 ALALSRMQMLWDLHVLVQHMRAESVRPDLVTYGALVDAYAIARLLPRLPEQLDELDMADT 302
Query: 356 -PVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYL 399
P V TDP VF+AFG+G FH+ +A++ Y L YL
Sbjct: 303 IPDVRTDPLVFQAFGRGRFHAFCDAYVRSSSTTLVNYSTLTTAYL 347
>gi|302801133|ref|XP_002982323.1| hypothetical protein SELMODRAFT_116308 [Selaginella moellendorffii]
gi|300149915|gb|EFJ16568.1| hypothetical protein SELMODRAFT_116308 [Selaginella moellendorffii]
Length = 358
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 191/345 (55%), Gaps = 2/345 (0%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
+ +PH A + + +++ + P AL YA +G V AQ +L + +V
Sbjct: 4 KAGQPHAAQGVFDGMEAMQVRPSVVGFSALAQSYAESGDVEGAQSAMRRMLDTGIQPNVV 63
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
L+ AYG+ G F+++ +++ + + VY I + G + M+ K M
Sbjct: 64 TYGGLIRAYGKRGLFDDMAKVVNTMKTVRCEPDFFVYKNVIEAYASGGLVGRMDKAFKAM 123
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
+ G+ DS N Y+ G + EME A G L+R + +E +RA + Y++ +F
Sbjct: 124 RADGWIPDSDILNLLAQGYASMGMIKEMEGAQGELRRIKGWPREESVRACALAYIRHDQF 183
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
+ + F++ +G+ R GNLLWNLLLL++A NF MKSLQRE + M A PD+TTFNIR
Sbjct: 184 YQMEGFVKSLGMKRIG-GNLLWNLLLLAHAANFSMKSLQREAVNMWSARCAPDVTTFNIR 242
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS 355
A+A SRM M WDLH+ ++HM+ ESV PDLVTYG +VDAY RL L L ++++ D+
Sbjct: 243 ALALSRMQMLWDLHVLVQHMRAESVRPDLVTYGALVDAYAIARLLPRLPEQLDELDMADT 302
Query: 356 -PVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYL 399
P V TDP VF+AFG+G FH+ +A++ Y L YL
Sbjct: 303 IPDVRTDPLVFQAFGRGRFHAFCDAYVRSSSTTLVNYSTLTTAYL 347
>gi|168020157|ref|XP_001762610.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686343|gb|EDQ72733.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 418
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 194/372 (52%), Gaps = 9/372 (2%)
Query: 38 YRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
+++Q+G+ + ++ LG+ P A L + GL P T L+ YA G
Sbjct: 32 WQQQDGYKPYELYYTKIIRMLGQAHMPTEARTLFIEMCELGLRPSVVTYTYLLQGYAERG 91
Query: 94 FVLEA-QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
EA Q++ + +LS + + L+ AYG+ G ++ + +++ ++ Y
Sbjct: 92 EFEEAEQILRDMILSGDAKPNTTTYAGLIYAYGKHGMYDRMWRTFNRMKTQHIPADEFSY 151
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
I + + G M+ T+KEM G DSAT NA ++ Y+ G + EME Y + +
Sbjct: 152 RTLIKAYARGGLFSRMQQTMKEMSRNGMYADSATMNAVVLAYAEAGLVKEMEKQYEVMWK 211
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
+ +E I+A+ Y+K+ FF L +++ VGL ++ + N LWN LLLS+A N M
Sbjct: 212 NSFTAGQETIKAIVRAYVKDSLFFQLSGYVKRVGLRKRTMVNYLWNALLLSHAANLAMDD 271
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
L +F M GF PD+TT NI A+A+SR DLH + M+ + PDLVTYG V+D
Sbjct: 272 LGVDFQNMKYLGFSPDVTTCNIMALAYSRAKQLEDLHQLIVTMQDNGIAPDLVTYGAVID 331
Query: 333 AYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKGDFHSSSEAF---LEFKRQRK 388
+ +++L NL L + NLD + V TDP VFE GKG FH + E +E +R +
Sbjct: 332 VFTEEKLRPNLLEELVEFRNLDVAAEVETDPLVFEVLGKGRFHVACEKLARNMEGERMNQ 391
Query: 389 WTYRKLIAVYLK 400
TY +L+ +L+
Sbjct: 392 RTYGELVGCFLQ 403
>gi|363807316|ref|NP_001242112.1| uncharacterized protein LOC100791611 [Glycine max]
gi|255645147|gb|ACU23072.1| unknown [Glycine max]
Length = 209
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 110/166 (66%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G +P ++LC LML Y NGF +AQ VWE+LL+SSFV SVQ +S L DAY + G F+E+
Sbjct: 44 GYMPKQTSLCVLMLHYTENGFFPQAQTVWEQLLNSSFVPSVQFISRLFDAYAKHGKFDEV 103
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I + V RN +LP+VYS ISCFG++GQLELME+ KEM SRG + S T NAF++Y
Sbjct: 104 IDTLRYVDMRNFSILPDVYSLTISCFGREGQLELMEDMAKEMASRGIHICSRTANAFLLY 163
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
S FGSL EME AYGRLK+SR LI+K K K +G
Sbjct: 164 CSIFGSLKEMENAYGRLKKSRFLIEKGSDSRCGLCVYKGEKILRIG 209
>gi|225463331|ref|XP_002268109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
chloroplastic-like [Vitis vinifera]
Length = 581
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 157/337 (46%), Gaps = 23/337 (6%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K+ GL P ++ C+A G A EL +++ + + L+ +YG+
Sbjct: 191 MKTHGLKPSLEIYNLVIHCFARKGEFDRALYFLNELKANNLIADTETYDGLIQSYGKYKM 250
Query: 130 FNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
++E+ + ++ LP+ Y+ I F + G L+ ME + ++S+ + S+T
Sbjct: 251 YDELDECVKKMESDGC--LPDHITYNLLIQEFSRGGLLKRMERVFQTVLSKKMGLQSSTL 308
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL 247
+ Y+ FG + +ME AY R+ S+ + + IR ++ Y++ KF L D+GL
Sbjct: 309 VVMLEAYANFGIIEKMENAYRRVLNSKTSLKDDLIRKLAEVYIENYKFSRLA----DMGL 364
Query: 248 GRKDL---GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ +L+W L LLS+A K L M + T N +A+ +M
Sbjct: 365 NLASVTSRTDLVWCLRLLSHACLLSRKGLDSIVKEMEAKNVPWNATVANTILLAYLKMKD 424
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN----LDDSPVVST 360
F L + L + V PD+VT G + DA R+G N L+ LD++ ++T
Sbjct: 425 FTRLRILLLELSTRHVKPDIVTVGILFDA---NRIGFNGTMALNTWRRTGFLDEAVEMNT 481
Query: 361 DPYVFEAFGKGDFHSSSEAFL-----EFKRQRKWTYR 392
DP V AFGKG+F S E E ++++ WTY+
Sbjct: 482 DPLVLSAFGKGNFLQSCEEMYSSLEPEARKKKIWTYQ 518
>gi|356569072|ref|XP_003552730.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
chloroplastic-like [Glycine max]
Length = 509
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 154/340 (45%), Gaps = 13/340 (3%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K +G+ P T ++ + G +A +E+ S L + L+ AYG+
Sbjct: 163 MKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMKESGLELDSETYDGLLGAYGKFQM 222
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
++E+ + ++ Y+ I + + G L+ ME + MVS+ V S+T A
Sbjct: 223 YDEMGECVKKMELEGCSPDHITYNILIQEYARAGLLQRMEKLYQRMVSKRMHVQSSTLVA 282
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
+ Y+ FG + +ME Y ++ S+ ++ + IR V+ Y+K F L + D+
Sbjct: 283 MLEAYTTFGMVEKMENFYRKILSSKTCLEDDLIRKVAEVYIKNYMFSRLEDLALDLCPAF 342
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ NL+W L LLSYA K + M +A + ++T NI +A+ +M F L
Sbjct: 343 GE-SNLVWCLRLLSYACPLSKKGMDIVVREMRDAKVNWNVTVANIIMLAYVKMKDFRHLK 401
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN----LDDSPVVSTDPYVF 365
+ L + V PD++T G + DA R+G + L L + TD V
Sbjct: 402 ILLSQLPIYRVQPDIITIGILFDA---TRIGFDGSGALETWRRMGYLYRVVEIKTDSLVL 458
Query: 366 EAFGKGDFHSSSEAFL-----EFKRQRKWTYRKLIAVYLK 400
AFGKG F S E E ++++ WTY LIA+ K
Sbjct: 459 TAFGKGHFLKSCEEVYSSLHPEDRKRKTWTYHDLIALLSK 498
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 1/176 (0%)
Query: 130 FNEIISIIDQVSCRNADLLPEV-YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN 188
F +I+ + D + E Y++ I + G++E + L++M +G T N
Sbjct: 117 FTQILQVFDMWKNIEKSRISEFNYNKIIGLLCEGGKMEDALSALRDMKVQGIKPSLDTYN 176
Query: 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG 248
I SR G ++ +K S +D E + Y K + + +GE ++ + L
Sbjct: 177 PIIHGLSREGKFSDALRFIDEMKESGLELDSETYDGLLGAYGKFQMYDEMGECVKKMELE 236
Query: 249 RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
++ +N+L+ YA ++ +++ + RM H +T A++ M
Sbjct: 237 GCSPDHITYNILIQEYARAGLLQRMEKLYQRMVSKRMHVQSSTLVAMLEAYTTFGM 292
>gi|79474381|ref|NP_193155.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635638|sp|O23278.2|PP310_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14190, chloroplastic; Flags: Precursor
gi|332657991|gb|AEE83391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 501
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 152/338 (44%), Gaps = 13/338 (3%)
Query: 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134
L P +++ YA++G EA + + + + L++AYG+ ++EI+
Sbjct: 163 LSPSLEIYNSIIHSYADDGKFEEAMFYLNHMKENGLLPITETYDGLIEAYGKWKMYDEIV 222
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ ++ Y+ I F + G L+ ME + ++SR +++ +T + + Y
Sbjct: 223 LCLKRMESDGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMSRKMTLEPSTLLSMLEAY 282
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
+ FG + +ME ++ R +D+ +R ++ Y++ F L + R + R
Sbjct: 283 AEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYIENLMFSRLDDLGRGISASRTRRTE 342
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
L W L LL +A K L M EA + T NI +A+S+M F + L L
Sbjct: 343 LAWCLRLLCHARLVSRKGLDYVVKEMEEARVPWNTTFANIALLAYSKMGDFTSIELLLSE 402
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPV-VSTDPYVFEAFGKGDF 373
++ + V DLVT G V D + G + K+ D PV + TDP V AFGKG F
Sbjct: 403 LRIKHVKLDLVTVGIVFDLSEARFDGTGVFMTWKKIGFLDKPVEMKTDPLVHAAFGKGQF 462
Query: 374 HSSSEAFLEFKRQ---------RKWTYRKLIAVYLKKQ 402
S E E K Q + WTY+ L+ + +K Q
Sbjct: 463 LRSCE---EVKNQSLGTRDGESKSWTYQYLMELVVKNQ 497
>gi|2244775|emb|CAB10198.1| salt-inducible protein homolog [Arabidopsis thaliana]
gi|7268124|emb|CAB78461.1| salt-inducible protein homolog [Arabidopsis thaliana]
Length = 561
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 152/338 (44%), Gaps = 13/338 (3%)
Query: 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134
L P +++ YA++G EA + + + + L++AYG+ ++EI+
Sbjct: 223 LSPSLEIYNSIIHSYADDGKFEEAMFYLNHMKENGLLPITETYDGLIEAYGKWKMYDEIV 282
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ ++ Y+ I F + G L+ ME + ++SR +++ +T + + Y
Sbjct: 283 LCLKRMESDGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMSRKMTLEPSTLLSMLEAY 342
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
+ FG + +ME ++ R +D+ +R ++ Y++ F L + R + R
Sbjct: 343 AEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYIENLMFSRLDDLGRGISASRTRRTE 402
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
L W L LL +A K L M EA + T NI +A+S+M F + L L
Sbjct: 403 LAWCLRLLCHARLVSRKGLDYVVKEMEEARVPWNTTFANIALLAYSKMGDFTSIELLLSE 462
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPV-VSTDPYVFEAFGKGDF 373
++ + V DLVT G V D + G + K+ D PV + TDP V AFGKG F
Sbjct: 463 LRIKHVKLDLVTVGIVFDLSEARFDGTGVFMTWKKIGFLDKPVEMKTDPLVHAAFGKGQF 522
Query: 374 HSSSEAFLEFKRQ---------RKWTYRKLIAVYLKKQ 402
S E E K Q + WTY+ L+ + +K Q
Sbjct: 523 LRSCE---EVKNQSLGTRDGESKSWTYQYLMELVVKNQ 557
>gi|297800842|ref|XP_002868305.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297314141|gb|EFH44564.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 502
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 143/321 (44%), Gaps = 7/321 (2%)
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
YA+ G EA + + + + L++AYG+ ++EI+ + ++
Sbjct: 178 YADEGKFEEAMFYLNHMKENGLLPITETYDGLIEAYGKWKMYDEIVLCLKRMESEGCVRD 237
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
Y+ I F + G L+ ME + ++SR +++ +T + + Y+ FG + +ME
Sbjct: 238 HVTYNLLIREFSRGGLLKRMEQMYQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCN 297
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
++ R +D+ +R ++ Y+ F L + R + R +L W L LL +A
Sbjct: 298 KIIRFGISLDEGLVRKLANVYIDNLMFSRLDDLGRGISSSRTRRTDLAWCLRLLCHARLV 357
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
K L M EA + T NI +A+S+M F + L L ++ + V DLVT G
Sbjct: 358 SRKGLDYVIKEMKEARVPWNTTFANITLLAYSKMGDFKSIELLLSELRTKHVKLDLVTVG 417
Query: 329 CVVDAYLDKRLGRNLDFGLSKMNLDDSPV-VSTDPYVFEAFGKGDFHSSSEAF------L 381
+ D + K+ D PV + TDP V AFGKG F S E +
Sbjct: 418 IIFDLSEAGFDVTGVFMTWKKIGFLDKPVEMKTDPLVHAAFGKGKFLKSCEEVKNQSLGM 477
Query: 382 EFKRQRKWTYRKLIAVYLKKQ 402
+ + WTY+ L+ V +K Q
Sbjct: 478 RGEESKAWTYQYLMEVVVKNQ 498
>gi|356540106|ref|XP_003538531.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
chloroplastic-like [Glycine max]
Length = 506
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 148/340 (43%), Gaps = 13/340 (3%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K +G+ P T ++ + G +A +E+ S L + L+ AYG+
Sbjct: 161 MKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMKESGLELDSETYDGLIGAYGKFQM 220
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
++E+ + ++ P Y+ I + G L+ ME + M+S+ V S+T A
Sbjct: 221 YDEMGECVKKMELEGCSPDPITYNILIQEYAGGGLLQRMEKLYQRMLSKRMHVKSSTLVA 280
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
+ Y+ FG + +ME Y ++ S+ I+ + IR V+ Y+ F L + D+
Sbjct: 281 MLEAYTTFGMVEKMEKFYRKILNSKTCIEDDLIRKVAEVYINNFMFSRLEDLALDLCPAF 340
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ NL W LLSYA K + M +A ++T NI +A+ +M F L
Sbjct: 341 GE-SNLEWCFRLLSYACLLSKKGMDIVVQEMQDAKVSWNVTVANIIMLAYVKMKEFRHLR 399
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN----LDDSPVVSTDPYVF 365
+ L + V PD++T G + DA R+G + L L + TD V
Sbjct: 400 ILLSQLPIYRVQPDIITIGILFDA---TRIGFDGSGALETWRRMGYLYRVVEMKTDSLVL 456
Query: 366 EAFGKGDFHSSSEAFL-----EFKRQRKWTYRKLIAVYLK 400
AFGKG F S E E ++++ TY LI + K
Sbjct: 457 TAFGKGHFLKSCEEVYSSLHPEDRKRKTCTYHDLIPLLSK 496
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 6/272 (2%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+L +K++G+ PD T + A+ EA ++ ++ SS+ + L+D Y
Sbjct: 174 ELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVY 233
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G+ G +NE +++ ++ +A LP + Y+ +S FG+ G MVS+G
Sbjct: 234 GKAGWYNEAANVLKEM--ESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEP 291
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T + + YSR G + + Y +++ S + A+ + K + F +
Sbjct: 292 DVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIF 351
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
D+ + + WN LL ++ N + + F M +AGF PD TFNI A+ R
Sbjct: 352 EDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRC 411
Query: 303 SMFWDLHLSL-EHMKHESVGPDLVTYGCVVDA 333
D LS+ + M PDL T+ ++ A
Sbjct: 412 GSS-DQALSIYDGMLQAGCTPDLATFNTLLAA 442
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 131/314 (41%), Gaps = 6/314 (1%)
Query: 27 KNGDLAR--KIIRYRKQEGF-VDCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
KNG + K+ R K+ GF D A+ L+E GR A + + + G PD +
Sbjct: 375 KNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLA 434
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T L+ A G A+++ +EL SS+ + + ++ AY G ++ ++D +
Sbjct: 435 TFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTL 494
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ + + K ++ E+ M G+ D++T NA I Y + G +
Sbjct: 495 HTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMM 554
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
+ + L+ + D + Y +E + LR+ + + +N +
Sbjct: 555 DKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTV 614
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
+ SY+ + ++ S R F M G PD T+N + MF + ++HM
Sbjct: 615 IFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGC 674
Query: 321 GPDLVTYGCVVDAY 334
PD VTY +VDAY
Sbjct: 675 KPDEVTYRTLVDAY 688
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/391 (19%), Positives = 152/391 (38%), Gaps = 41/391 (10%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ GR + A ++ +++ S+G+ PD T +L+ Y+ G V +A ++ ++ +S+
Sbjct: 264 LLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSN 323
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+ +G+ F+E++ I + + + ++ + FGK G +
Sbjct: 324 CTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVL 383
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY---------------------- 207
+ M GF D AT N I Y R GS + + Y
Sbjct: 384 KVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAAL 443
Query: 208 ---GR----------LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
GR L RS + + ++ Y + L E + +
Sbjct: 444 AREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTK 503
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+L +L Y+ + + F+ M G+ D +TFN + + M +
Sbjct: 504 ILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFAL 563
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK-MNLDDSP-VVSTDPYVFEAFGKGD 372
++ + PD+VTY C++ Y + + R + L + M +P +VS + +F G
Sbjct: 564 LRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQ 623
Query: 373 FHSSSEAFLEFK----RQRKWTYRKLIAVYL 399
S++ F E + +TY + Y+
Sbjct: 624 LSSATRIFHEMVSNGIQPDSFTYNTFVGCYV 654
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 4/168 (2%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
++ G L D ST A++ Y G + +A + L S+ V + LM YGR G
Sbjct: 529 MRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGM 588
Query: 130 FNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
+ + + + + C A P++ Y+ I + K GQL EMVS G DS T
Sbjct: 589 YRKCEATLRE--CMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTY 646
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
N F+ Y G E + + ++ D+ R + Y K KF
Sbjct: 647 NTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKF 694
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 66/325 (20%), Positives = 124/325 (38%), Gaps = 20/325 (6%)
Query: 25 HPKNGDLARKIIRYRKQEG------FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD 78
H KN + + ++ + + V SL+ G+ ++ +K G PD
Sbjct: 338 HGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPD 397
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
+T L+ Y G +A +++ +L + + + L+ A R G + I+D
Sbjct: 398 KATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILD 457
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV----DSATGNAFIIYY 194
+++ + Y+ + + G+LE LKEMV ++ F++ Y
Sbjct: 458 ELNRSSYKPNDIAYASMLHAYANGGELE----KLKEMVDTLHTIYVPFTKILLKTFVLVY 513
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE---RKFFMLGEFLRDVGLGRKD 251
S+ + E E A+ ++ +L D A+ Y K+ K LR GL D
Sbjct: 514 SKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGL-EPD 572
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ + +N L+ Y + + AG PDL ++N ++S+
Sbjct: 573 V--VTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRI 630
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLD 336
M + PD TY V Y++
Sbjct: 631 FHEMVSNGIQPDSFTYNTFVGCYVN 655
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/288 (19%), Positives = 108/288 (37%), Gaps = 35/288 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ G+ + A ++ ++S G LP+ T L+ + G A + + ++S
Sbjct: 228 ALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSK 287
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V + L+ AY R G + + I +Q+ N ++ I GK M
Sbjct: 288 GIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEM 347
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
++M + G D T N+ + + + G +E+ + +K++ DK
Sbjct: 348 MVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKA-------- 399
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
+N+L+ +Y + M +AG PD
Sbjct: 400 ---------------------------TFNILIEAYGRCGSSDQALSIYDGMLQAGCTPD 432
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
L TFN A +R + L L+ + S P+ + Y ++ AY +
Sbjct: 433 LATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYAN 480
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHM 315
+ L+ + + N K K F +M EAG P L T+N+ + + W+ L L E M
Sbjct: 120 YTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEM 179
Query: 316 KHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFH 374
K + + PD TY + A L ++M + +P T + + +GK ++
Sbjct: 180 KAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWY 239
Query: 375 SSSEAFLE 382
+ + L+
Sbjct: 240 NEAANVLK 247
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + + S G+ PD+ T + CY N G EA V + + + L+D
Sbjct: 627 ATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVD 686
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154
AY +IG F E+ I+ + + + Y R
Sbjct: 687 AYCKIGKFEEVERILKFIKSSDPNFSKAAYRR 718
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
++ ++ R F + E G+ D+ + A SR F + E MK P LVTY
Sbjct: 97 QLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYN 156
Query: 329 CVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFE----AFGKGDF-HSSSEAFLEF 383
++D Y K GR+ + L + + D Y + A G ++E F +
Sbjct: 157 VIIDLYGKK--GRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQM 214
Query: 384 KRQR----KWTYRKLIAVYLK 400
K + TY L+ VY K
Sbjct: 215 KSSNCTPDRVTYNALLDVYGK 235
>gi|147862853|emb|CAN80932.1| hypothetical protein VITISV_017362 [Vitis vinifera]
Length = 1697
Score = 89.0 bits (219), Expect = 4e-15, Method: Composition-based stats.
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 9/271 (3%)
Query: 67 VNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126
+ +K+ GL P ++ C+A G A EL ++ + + L+ +YG+
Sbjct: 1427 LEXMKTHGLKPSLEIYNLVIHCFARKGEFDRALYFLNELKXNNLIADTETYDGLIQSYGK 1486
Query: 127 IGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
++E+ + ++ LP+ Y+ I F + G L+ ME + ++S+ + S
Sbjct: 1487 YKMYDELDECVKKMESDGC--LPDHITYNLLIQEFSRGGLLKRMERVFQTVLSKKMGLQS 1544
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
+T + Y+ FG + +ME AY R+ S+ + + IR ++ Y++ KF L + D
Sbjct: 1545 STLVVMLEAYANFGIIEKMENAYRRVLNSKTSLKDDLIRKLAEVYIENYKFSRLADMGLD 1604
Query: 245 VG--LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ R D L+W L LLS+A K L M + T N +A+ +M
Sbjct: 1605 LASVTSRTD---LVWCLRLLSHACLLSRKGLDSIVKEMEAKNVPWNATVANTILLAYLKM 1661
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
F L + L + V PD+VT G + DA
Sbjct: 1662 KDFTRLRILLLELSTRHVKPDIVTVGILFDA 1692
>gi|255550708|ref|XP_002516403.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544501|gb|EEF46020.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 502
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 143/347 (41%), Gaps = 48/347 (13%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G + +A + E+ + S+QV + L+ Y R G F++ + ++ + N + + Y
Sbjct: 147 GLIEDAYSAFIEMKTLCLSPSLQVYNSLIHGYARNGKFDDAVFYLNHLKEINLSPVSDTY 206
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI--------------IY----- 193
+ I +GK + M LK+M G S D T N I +Y
Sbjct: 207 NGLIQAYGKYKMYDEMGMCLKKMEMEGCSPDHVTYNLLIQELAEAGLLTRMEKVYQTTRM 266
Query: 194 ----------------YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF- 236
Y+ FG + +ME R + S+ L+ ++ I+ ++ Y++ F
Sbjct: 267 NRMDLKSTTLTAMLEAYANFGIVEKMELILKRTRNSKALLKEDLIKKIALVYIENFMFSR 326
Query: 237 --MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
LG +L R +++W LLLLS A K + M A ++T NI
Sbjct: 327 LEKLGHYLSK----RSGQNDMVWCLLLLSNACMLSQKGMDSVVREMKVAKVSWNVTFINI 382
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD 354
+A+ +M L + L + + V PD+VT G + DA G + + +
Sbjct: 383 ILLAYLKMKDSMRLGILLSTLTNHIVKPDIVTVGVLFDANNIGFHGNGILETWRRTGILY 442
Query: 355 SPV-VSTDPYVFEAFGKGDF-HSSSEAFLEF----KRQRKWTYRKLI 395
V TDP V AFGKG F EA+ +++ KWTY LI
Sbjct: 443 RCVETETDPLVLAAFGKGQFLKKCEEAYSSLEPVARQKEKWTYCNLI 489
>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 511
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 147/322 (45%), Gaps = 32/322 (9%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA- 155
EA ++E +L +V VL+ L+ AYG+ G F S I+ + D P+VY+ +
Sbjct: 150 EASQLYETMLFEGLKPTVDVLTALVSAYGQSGLFRHAFSTIEDMK-SVVDCKPDVYTYSV 208
Query: 156 -ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
ISC K + +L+E L +M G +S T N+ I Y + G +ME +
Sbjct: 209 LISCCAKFRRFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMENSL------T 262
Query: 215 HLIDKEGIRAVSFT-------YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--A 265
+I+ E + FT Y K + ++ + L +N+++ SY A
Sbjct: 263 DMIENENCQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKTFNMMIKSYGKA 322
Query: 266 GNF-KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
G + KMKS+ +FM F P + T+N + + + ++MKH + P+
Sbjct: 323 GMYDKMKSVM-DFME--RRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNS 379
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY---VFEAFGK-GDFHSSSEAF 380
VTY +V+AY L R +D L ++++S V+ P+ + A+G+ GD E F
Sbjct: 380 VTYCSLVNAYSKAGLIRKIDSILR--HVENSDVILDTPFFNCIISAYGQVGDLKKMGELF 437
Query: 381 LEFKRQR----KWTYRKLIAVY 398
L + ++ + T+ +I Y
Sbjct: 438 LAMRARKCEPDRTTFTCMIQAY 459
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 111/246 (45%), Gaps = 19/246 (7%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCAS-----LVEDLGRK 57
T+S+ + KF+RF DL +++ G ++C S +++ G+
Sbjct: 205 TYSVLISCCAKFRRF------------DLIERVLADMSYSG-IECNSVTYNSIIDGYGKA 251
Query: 58 KK-PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQV 116
+ + L + +++E PD TL +L+ Y N G + + + ++E S ++
Sbjct: 252 GMFEQMENSLTDMIENENCQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKT 311
Query: 117 LSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMV 176
+ ++ +YG+ G ++++ S++D + R Y+ I +GK G++E M+ K M
Sbjct: 312 FNMMIKSYGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMK 371
Query: 177 SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF 236
G +S T + + YS+ G + ++++ ++ S ++D + Y +
Sbjct: 372 HIGMKPNSVTYCSLVNAYSKAGLIRKIDSILRHVENSDVILDTPFFNCIISAYGQVGDLK 431
Query: 237 MLGEFL 242
+GE
Sbjct: 432 KMGELF 437
>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
Length = 485
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 148/355 (41%), Gaps = 47/355 (13%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-SSFVL 112
LG+ K+P A L + SEGL P AL+ Y ++G + +A E++ S S
Sbjct: 138 LGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKP 197
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
V S L+ +G F+ I I ++S + Y+ I +GK ELME++L
Sbjct: 198 DVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSL 257
Query: 173 KEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
EM+ G + D T N+FI Y G + +ME Y
Sbjct: 258 TEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYD----------------------- 294
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
+F ++G R D+ +N+L+ SY + + M + + P + T
Sbjct: 295 --EFQLMGI--------RPDIKT--FNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVT 342
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
FNI F R+ + MKH+ V P+ +TY +V AY + +D L +
Sbjct: 343 FNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQ-- 400
Query: 352 LDDSPVVSTDPY---VFEAFGK-GDFHSSSEAFLEFKRQR----KWTYRKLIAVY 398
+++S V P+ V A+G+ GD E FL K ++ T+ +I Y
Sbjct: 401 IENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAY 455
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++E GR + +K +G+ P++ T C+L+ Y+ G++ + + ++ +S
Sbjct: 346 VIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSD 405
Query: 110 FVLSVQVLSDLMDAYGRIGC---FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
L + ++ AYG+ G E+ ++ + C+ ++ ++ I + QG +E
Sbjct: 406 VTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNI---TFATMIQAYNAQGMIE 462
Query: 167 LMENTLKEMVS 177
+N M++
Sbjct: 463 AAQNLEVNMIT 473
>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Vitis vinifera]
Length = 538
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 148/355 (41%), Gaps = 47/355 (13%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-SSFVL 112
LG+ K+P A L + SEGL P AL+ Y ++G + +A E++ S S
Sbjct: 138 LGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKP 197
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
V S L+ +G F+ I I ++S + Y+ I +GK ELME++L
Sbjct: 198 DVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELMESSL 257
Query: 173 KEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
EM+ G + D T N+FI Y G + +ME Y
Sbjct: 258 TEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYD----------------------- 294
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
+F ++G R D+ +N+L+ SY + + M + + P + T
Sbjct: 295 --EFQLMG--------IRPDIKT--FNILIRSYGKACMYEKMVSVMEFMKKRFYSPTIVT 342
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
FNI F R+ + MKH+ V P+ +TY +V AY + +D L +
Sbjct: 343 FNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQ-- 400
Query: 352 LDDSPVVSTDPY---VFEAFGK-GDFHSSSEAFLEFKRQR----KWTYRKLIAVY 398
+++S V P+ V A+G+ GD E FL K ++ T+ +I Y
Sbjct: 401 IENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAY 455
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 66/153 (43%), Gaps = 18/153 (11%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++E GR + +K +G+ P++ T C+L+ Y+ G++ + + ++ +S
Sbjct: 346 VIEMFGRVGNIEKMEEFFLKMKHQGVKPNSITYCSLVSAYSKAGYLKKVDSILRQIENSD 405
Query: 110 FVLSVQVLSDLMDAYGRIGC---FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
L + ++ AYG+ G E+ ++ + C+ ++ ++ I + QG +E
Sbjct: 406 VTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNI---TFATMIQAYNAQGMIE 462
Query: 167 LMENTLKEMVSR------------GFSVDSATG 187
+N M++ GF SA G
Sbjct: 463 AAQNLEVNMITTKNKSGTRKEQFIGFVTASAAG 495
>gi|224131534|ref|XP_002321108.1| predicted protein [Populus trichocarpa]
gi|222861881|gb|EEE99423.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 147/346 (42%), Gaps = 46/346 (13%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G + +A + E+ S LS++V + ++ Y R G F++ + ++Q++ N + Y
Sbjct: 74 GLMEDAVTAFMEMKSFGLCLSLEVYNSIIHGYARNGKFDDALFYLNQMNEMNLSPESDTY 133
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG--RL 210
I +G + M LK+M G S D T N I +++ G LT ME Y R
Sbjct: 134 DGLIEAYGTYRMYDEMAMCLKKMELDGCSPDRYTYNLLIQKFAQGGLLTRMERVYQSMRT 193
Query: 211 KR---------------------------------SRHLIDKEGIRAVSFTYLKERKFFM 237
KR S+ + ++ +R ++ Y+ F
Sbjct: 194 KRMKLQSSTLISMLEAYANFGIVEKMEKILRWAWNSKITVKEDLVRKLAGVYIANYMFSR 253
Query: 238 LGEFLRDVG--LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
L + D+ GR D+ +W L LLS+A + + M +A ++T NI
Sbjct: 254 LHDLAVDLTSITGRTDI---VWCLHLLSHACLLSRRGMDAVVREMEDAKACWNITVANII 310
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS 355
+A+ +M F L + L + V PD+VT+G + DA G+ KM L
Sbjct: 311 LLAYLKMKDFTRLRILLSKLPEIRVEPDIVTFGILFDAEEIGFDGKECLEMWRKMGLLYR 370
Query: 356 PV-VSTDPYVFEAFGKGDFHSSSE---AFLE--FKRQRKWTYRKLI 395
V ++TDP AFGKG F S E + LE + +++WTY I
Sbjct: 371 RVEMNTDPLALSAFGKGSFLRSCEEGYSSLEPNAREKKRWTYVDFI 416
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 44/338 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ R A +L N + +G PD T L+ + G V A ++EE+ ++
Sbjct: 354 SLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNA 413
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
++ + + YG G F E++ I D+++ L P++ ++ ++ FG+ G
Sbjct: 414 GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINV--CGLSPDIVTWNTLLAVFGQNGMDS 471
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ KEM GF + T N I YSR GS + T Y R+ + D V
Sbjct: 472 EVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVL 531
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK---MKSL---------- 273
+ + + L ++ GR L + LL +YA + M SL
Sbjct: 532 AALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIE 591
Query: 274 ----------------------QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+R F + E GF PD+TT N + R M +
Sbjct: 592 PRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGV 651
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
L++MK P + TY ++ + R+ DFG S+
Sbjct: 652 LDYMKERGFTPSMATYNSLMYMH-----SRSADFGKSE 684
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 6/271 (2%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
LV +KS+G+ PD T L+ C EA V+EE+ ++ F + L+D YG
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYG 325
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ E + +++++ Y+ IS + + G L+ +M +G D
Sbjct: 326 KSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI---RAVSFTYLKERKFFMLGEFL 242
T + + R G ++E+A + R+ K I A Y KF + +
Sbjct: 386 TYTTLLSGFERAG---KVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
++ + + WN LL + N + F M AGF P+ TFN A+SR
Sbjct: 443 DEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
F M V PDL TY V+ A
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA 533
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 113/300 (37%), Gaps = 35/300 (11%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K G +P+ T L+ Y+ G +A V+ +L + + + ++ A R G
Sbjct: 480 MKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGM 539
Query: 130 FNE---IISIIDQVSCRNADLL---------------------PEVYSRAIS-------- 157
+ + +++ ++ C+ +L EVYS I
Sbjct: 540 WEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKT 599
Query: 158 ---CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
K L E E+ RGFS D T N+ + Y R + + +K
Sbjct: 600 LVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERG 659
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
++ + + + F E LR++ + +N ++ +Y N +M+
Sbjct: 660 FTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDAS 719
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R F M +G PD+ T+N +++ SMF + + +M P+ TY +VD Y
Sbjct: 720 RIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/391 (20%), Positives = 156/391 (39%), Gaps = 77/391 (19%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A ++ LG++ + A + N ++ +G D + +L+ +AN+G EA V++++
Sbjct: 177 AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 108 SSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQVS-----------------CRNADLLP 149
++ + +++ +G++G +N+I S+++++ C+ L
Sbjct: 237 DGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQ 296
Query: 150 E------------------VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
E Y+ + +GK + + L EMV GFS T N+ I
Sbjct: 297 EAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLI 356
Query: 192 IYYSRFGSLTE-METAYGRLKRSRHLIDKEGIRAVSFTYL----------KERKFFMLGE 240
Y+R G L E ME ++ + ++G + FTY K + E
Sbjct: 357 SAYARDGMLDEAMEL--------KNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFE 408
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
+R+ G + ++ +N + Y K + + F ++ G PD+ T+N F
Sbjct: 409 EMRNAGC-KPNI--CTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFG 465
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG----------RNLDFGLSKM 350
+ M ++ + MK P+ T+ ++ AY R G R LD G+
Sbjct: 466 QNGMDSEVSGVFKEMKRAGFVPERETFNTLISAY--SRCGSFEQAMTVYRRMLDAGV--- 520
Query: 351 NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFL 381
+P +ST V A +G SE L
Sbjct: 521 ----TPDLSTYNTVLAALARGGMWEQSEKVL 547
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 102/265 (38%), Gaps = 38/265 (14%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
DNS + ++ G V A ++ L F L V + L+ A+ G + E +++
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVF 231
Query: 138 DQVSCRNADLLPEVYSRAISCFGKQG-QLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
++ Y+ ++ FGK G + + +++M S G + D+ T N I R
Sbjct: 232 KKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKR 291
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
G L + + +E ++A F+Y K +
Sbjct: 292 -----------GSLHQEAAQVFEE-MKAAGFSYDK-----------------------VT 316
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+N LL Y + + K + M GF P + T+N A++R M + M
Sbjct: 317 YNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA 376
Query: 317 HESVGPDLVTYGCVVDAYLDKRLGR 341
+ PD+ TY ++ + +R G+
Sbjct: 377 EKGTKPDVFTYTTLLSGF--ERAGK 399
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 66/170 (38%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ K+ L H L V S + P L L+L + + EA+ + EL
Sbjct: 564 SLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER 623
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F + L+ ++ YGR + ++D + R Y+ + +
Sbjct: 624 GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKS 683
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
E L+E++++G D + N I Y R + + + ++ S + D
Sbjct: 684 EEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPD 733
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 6/271 (2%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
LV +KS+G+ PD T L+ C EA V+EE+ ++ F + L+D YG
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYG 325
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ E + +++++ Y+ IS + + G L+ +M +G D
Sbjct: 326 KSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI---RAVSFTYLKERKFFMLGEFL 242
T + + R G ++E+A + R+ K I A Y KF + +
Sbjct: 386 TYTTLLSGFERAG---KVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIF 442
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
++ + + WN LL + N + F M AGF P+ TFN A+SR
Sbjct: 443 DEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
F M V PDL TY V+ A
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA 533
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 141/359 (39%), Gaps = 48/359 (13%)
Query: 32 ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A K++ + GF V SL+ R A +L N + +G PD T L+
Sbjct: 333 AMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLS 392
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ G V A ++EE+ ++ ++ + + YG G F +++ I D+++ L
Sbjct: 393 GFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINV--CGL 450
Query: 148 LPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
P++ ++ ++ FG+ G + KEM GF + T N I YSR GS + T
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT 510
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
Y R+ + D V + + + L ++ GR L + LL +YA
Sbjct: 511 VYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYA 570
Query: 266 GNFK---MKSL--------------------------------QREFMRMSEAGFHPDLT 290
+ M SL +R F + E GF PD+T
Sbjct: 571 NGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDIT 630
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T N + R M + L++MK P + TY ++ + R+ DFG S+
Sbjct: 631 TLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMH-----SRSADFGKSE 684
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 114/300 (38%), Gaps = 35/300 (11%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K G +P+ T L+ Y+ G +A V+ +L + + + ++ A R G
Sbjct: 480 MKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGM 539
Query: 130 FNE---IISIIDQVSCRNADLL---------------------PEVYSRAIS-------- 157
+ + +++ ++ C+ +L EVYS I
Sbjct: 540 WEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKT 599
Query: 158 ---CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
K L E E+ RGFS D T N+ + Y R + + +K
Sbjct: 600 LVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERG 659
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
++ + + + F E LR++ + +N ++ +Y N +M+
Sbjct: 660 FTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDAS 719
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R F M ++G PD+ T+N +++ SMF + + +M P+ TY +VD Y
Sbjct: 720 RIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 102/265 (38%), Gaps = 38/265 (14%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
DNS + ++ G V A ++ L F L V + L+ A+ G + E +++
Sbjct: 172 DNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVF 231
Query: 138 DQVSCRNADLLPEVYSRAISCFGKQG-QLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
++ Y+ ++ FGK G + + +++M S G + D+ T N I R
Sbjct: 232 KKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKR 291
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
G L + + +E ++A F++ K +
Sbjct: 292 -----------GSLHQEAAQVFEE-MKAAGFSHDK-----------------------VT 316
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+N LL Y + + K + M GF P + T+N A++R M + M
Sbjct: 317 YNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA 376
Query: 317 HESVGPDLVTYGCVVDAYLDKRLGR 341
+ PD+ TY ++ + +R G+
Sbjct: 377 EKGTKPDVFTYTTLLSGF--ERAGK 399
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ K+ L H L V S + P L L+L + + EA+ + EL
Sbjct: 564 SLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER 623
Query: 109 SFVLSVQVLSDLMDAYGR---IGCFNEIISIIDQ----VSCRNADLLPEVYSRAISCFGK 161
F + L+ ++ YGR +G NE++ + + S + L ++SR+ FGK
Sbjct: 624 GFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSAD-FGK 682
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
E L+E++++G D + N I Y R + + + ++ S + D
Sbjct: 683 S------EEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPD 733
>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 132/342 (38%), Gaps = 46/342 (13%)
Query: 27 KNGDLARKIIRYRKQEGF---VDCASLVE---DLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K GDL++ + +G V A+LV LG + A + ++ GL P
Sbjct: 282 KAGDLSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTR 341
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
AL+ Y G + +A+ V E+ S + Q S L+DAYG G + ++ ++
Sbjct: 342 AYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEM 401
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
N V+SR +S + +G+ + L+EM + G D N I + +F L
Sbjct: 402 EASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCL 461
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
+ R+ EGI + T WN L
Sbjct: 462 DHAMATFDRML-------SEGIEPDTVT----------------------------WNTL 486
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
+ + K + F M E G+ P TTFNI +F + D+ L HM+ + +
Sbjct: 487 IDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGL 546
Query: 321 GPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDP 362
P+ VTY ++D Y G++ F + LDD P
Sbjct: 547 VPNSVTYTTLIDIY-----GKSGRFNDAIECLDDMKAAGLKP 583
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 125/310 (40%), Gaps = 39/310 (12%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +V+ ++ G+ P+ T L+ Y N G A++V +E+ +S+ + V S ++
Sbjct: 359 AEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILS 418
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+Y G + + ++ ++ N+ + P+ Y+ I FGK L+ T M+S G
Sbjct: 419 SYRDKGEWQKSFQVLREM--ENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGI 476
Query: 181 SVDSATGNAFIIYYSRFG------SLTE--METAYGRLKRSRHLI-----DKE------- 220
D+ T N I + R G L E ME Y + +++ D+E
Sbjct: 477 EPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKN 536
Query: 221 --------GIRAVSFTYL-------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
G+ S TY K +F E L D+ + ++N L+ +YA
Sbjct: 537 LLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYA 596
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+ F M G P L N AF + L++MK + PD+V
Sbjct: 597 QRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVV 656
Query: 326 TYGCVVDAYL 335
TY ++ A +
Sbjct: 657 TYTTLMKALI 666
>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 108/277 (38%), Gaps = 18/277 (6%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L +K+ G+LPD T L+ C EA V+E++ S FV + L+D YG
Sbjct: 91 LFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYG 150
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ E I ++ ++ Y+ IS + + G LE +MV RG +D
Sbjct: 151 KSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVF 210
Query: 186 TGNAFIIYYSRFGS-------LTEMETAYGR--LKRSRHLIDKEGIRAVSFTYLKERKFF 236
T A + + R G EM TA + + LI G R KF
Sbjct: 211 TYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRG---------KFA 261
Query: 237 MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
+ + ++ + + WN LL + N + F M GF P+ T+N
Sbjct: 262 EMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLI 321
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
A+SR F + M + PDL TY V+ A
Sbjct: 322 SAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAA 358
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 158/383 (41%), Gaps = 61/383 (15%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A ++ LG++ K +A L+N + +G PD +L+ +NG EA +V++++
Sbjct: 2 AVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEE 61
Query: 108 SSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
++ + +++ YG++G +N+I + + + +NA +LP+ Y+ I+C +
Sbjct: 62 EGCKPTLITYNVILNVYGKMGMPWNKITGLFEGM--KNAGILPDEYTYNTLITCCRRGSL 119
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSR-------FGSLTEME------------- 204
E ++M S GF D T N + Y + L EME
Sbjct: 120 YEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNS 179
Query: 205 --TAYGR---LKRSRHLIDK---EGIRAVSFTYL----------KERKFFMLGEFLRDVG 246
+AY R L+ + L ++ GI+ FTY K+ + E +R G
Sbjct: 180 LISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAG 239
Query: 247 LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW 306
+ ++ +N L+ + K + + F + PD+ T+N F + M
Sbjct: 240 C-KPNI--CTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDS 296
Query: 307 DLHLSLEHMKHESVGPDLVTYGCVVDAY-----LDKRLG---RNLDFGLSKMNLDDSPVV 358
++ + MK P+ TY ++ AY D+ + R LD G+ +P +
Sbjct: 297 EVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGI-------TPDL 349
Query: 359 STDPYVFEAFGKGDFHSSSEAFL 381
ST V A +G SE L
Sbjct: 350 STYNAVLAALARGGLWEQSEKIL 372
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 112/268 (41%), Gaps = 4/268 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ PD ST A++ A G +++ + E+ + L+ AY +
Sbjct: 344 GITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRM 403
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL-MENTLKEMVSRGFSVDSATGNAFII 192
+++ +++ C V + + + L L E E+ +GFS D +T NA I
Sbjct: 404 LALAEEI-CSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIA 462
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
Y R +T+ +K S ++ + + + F E L+++
Sbjct: 463 IYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKP 522
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+ +N ++ +Y N +MK F M E+G PD+ T+N +++ SMF + +
Sbjct: 523 DIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVV 582
Query: 313 EHMKHESVGPDLVTYGCVVDAY--LDKR 338
+M P+ TY V+D Y L++R
Sbjct: 583 CYMIKHGCKPNQNTYNSVIDGYCKLNRR 610
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 108/273 (39%), Gaps = 39/273 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ +K+ G PD T AL+ Y + EA V +E+ +S F S+ + L+
Sbjct: 310 AAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLIS 369
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
AY R G +E + + Q+ + + P+V Y+ +S F K G+ + +EM G
Sbjct: 370 AYARDGLLDEAMELKSQMVKKG--IKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGC 427
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ T NA I + G+ EM + +K + E
Sbjct: 428 QPNICTFNALIKMHGNRGNFVEMMKVFEEIK--------------------------ICE 461
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
+ D+ + WN LL + N + F M AGF P+ TFN A+S
Sbjct: 462 CVPDI---------VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYS 512
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
R F M V PDL TY V+ A
Sbjct: 513 RCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAA 545
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 123/289 (42%), Gaps = 4/289 (1%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L+ + K A ++ ++ G P+ T AL+ + N G +E V+EE+
Sbjct: 400 TTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKI 459
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
V + + L+ +G+ G +E+ + ++ + A +PE ++ IS + + G
Sbjct: 460 CECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEM--KRAGFVPERDTFNTLISAYSRCGFF 517
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ + M+ G + D +T NA + +R G + E +K R ++ ++
Sbjct: 518 DQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSL 577
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y ++ + ++ G + +L L+L Y+ + + +R F+ + E GF
Sbjct: 578 LHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGF 637
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD+TT N + R M + L +K P L TY ++ Y
Sbjct: 638 SPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMY 686
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 128/325 (39%), Gaps = 45/325 (13%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K G +P+ T L+ Y+ GF +A ++ +L + + + ++ A R G
Sbjct: 492 MKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGL 551
Query: 130 FNEIISIIDQVS-----------C-------------RNADLLPEVYSRAIS-------- 157
+ + ++ ++ C R + L E+YS I
Sbjct: 552 WEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKT 611
Query: 158 ---CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
+ K L E E+ +GFS D T NA + Y R +++ +K S
Sbjct: 612 LVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSG 671
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
++ + Y + F + LR++ + +N ++ +Y N +MK
Sbjct: 672 FTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEAS 731
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R F M + G PD+ T+N +++ SMF + +++M P+ TY ++D +
Sbjct: 732 RIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWF 791
Query: 335 --LDKRLG--------RNLDFGLSK 349
L++R RNLD ++K
Sbjct: 792 CKLNRRDEASSFISNLRNLDPSVTK 816
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHM 315
+ L+ +YA N + + F ++ E G P L T+N+ + +M M W L + M
Sbjct: 223 YTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSM 282
Query: 316 KHESVGPDLVTYGCVVDA 333
K V PDL TY ++ +
Sbjct: 283 KSSGVAPDLYTYNTLISS 300
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 71/191 (37%), Gaps = 34/191 (17%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
V + IS GK+G+ + L ++ + G +D + I Y+ G E + +L
Sbjct: 187 VVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKL 246
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
++EG R TY +V L + W+ K+
Sbjct: 247 -------EEEGCRPTLITY--------------NVILNVYGKMGMPWS----------KI 275
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
L M +G PDL T+N + R S++ + E MK PD VTY +
Sbjct: 276 AGLVDS---MKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNAL 332
Query: 331 VDAYLDKRLGR 341
+D Y R R
Sbjct: 333 LDVYGKSRRPR 343
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/359 (19%), Positives = 151/359 (42%), Gaps = 14/359 (3%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+K + + +++ + G P+ T ++ G V E + S LS
Sbjct: 394 LGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELS 453
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
+ L+ AYGR G + ++++ Y+ ++ +QG ++ +
Sbjct: 454 RDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVS 513
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMET----AYGRLKRSRHLIDKEGIRAVSFTY 229
+M ++GF + + + + Y++ G++ ++ YG +I +R +
Sbjct: 514 KMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVI----LRTLVIAN 569
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K R+ + + ++V + +++N +L YA N + F + ++G PDL
Sbjct: 570 FKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDL 629
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T+N +++ S W+ L +K V PD+V+Y V++ + + L + LS+
Sbjct: 630 ITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSE 689
Query: 350 MNLDD-SPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQR-----KWTYRKLIAVYLKKQ 402
M D +P V T + + + S + + + Q + TYR+++ Y K +
Sbjct: 690 MIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAK 748
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 119/301 (39%), Gaps = 43/301 (14%)
Query: 40 KQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K G C +L++ G+ A +++ ++ +G PD T L YA GF
Sbjct: 271 KARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFY 330
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YS 153
EA + + S + + + +M AYG IG +E +++ DQ+ + + +P V Y+
Sbjct: 331 EEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQM--KKSGCVPNVNTYN 388
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
+ GK+ + +M L EM G + + T N + + G ME R+
Sbjct: 389 FILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRG----MEDYVTRV--- 441
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
EG+++ E RD +N L+ +Y +
Sbjct: 442 -----LEGMKSCGV------------ELSRDT-----------YNTLIAAYGRCGSRTNA 473
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + M+ AGF P LTT+N SR + + M+ + P+ +Y ++
Sbjct: 474 FKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQC 533
Query: 334 Y 334
Y
Sbjct: 534 Y 534
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/268 (19%), Positives = 106/268 (39%), Gaps = 2/268 (0%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L++ +++ G+ PD+ T ++ +G V EA +E+L + V + L+ +G
Sbjct: 231 LLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFG 290
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ G + E + ++ ++ Y+ + + G E L M S+G ++
Sbjct: 291 KAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAF 350
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T N + Y G + E + ++K+S + + + K+ +F ++ E L ++
Sbjct: 351 TYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEM 410
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ WN +L+ G M+ + R M G T+N A+ R
Sbjct: 411 SRSGCTPNRVTWN-TMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGS 469
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ M P L TY +++
Sbjct: 470 RTNAFKMYNEMTSAGFAPCLTTYNALLN 497
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 50/113 (44%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +++N +KS + PD + ++ + G + EAQ + E+++ V L+
Sbjct: 648 AEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVG 707
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
Y + F+E +I+ + N + Y R + + K + E + L E+
Sbjct: 708 GYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFLSEV 760
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 108/273 (39%), Gaps = 39/273 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ +K+ G PD T AL+ Y + EA V +E+ +S F S+ + L+
Sbjct: 310 AAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLIS 369
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
AY R G +E + + Q+ + + P+V Y+ +S F K G+ + +EM G
Sbjct: 370 AYARDGLLDEAMELKSQMVKKG--IKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGC 427
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ T NA I + G+ EM + +K + E
Sbjct: 428 QPNICTFNALIKMHGNRGNFVEMMKVFEEIK--------------------------ICE 461
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
+ D+ + WN LL + N + F M AGF P+ TFN A+S
Sbjct: 462 CVPDI---------VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYS 512
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
R F M V PDL TY V+ A
Sbjct: 513 RCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAA 545
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 123/289 (42%), Gaps = 4/289 (1%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L+ + K A ++ ++ G P+ T AL+ + N G +E V+EE+
Sbjct: 400 TTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKI 459
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
V + + L+ +G+ G +E+ + ++ + A +PE ++ IS + + G
Sbjct: 460 CECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEM--KRAGFVPERDTFNTLISAYSRCGFF 517
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ + M+ G + D +T NA + +R G + E +K R ++ ++
Sbjct: 518 DQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSL 577
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y ++ + ++ G + +L L+L Y+ + + +R F+ + E GF
Sbjct: 578 LHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGF 637
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD+TT N + R M + L +K P L TY ++ Y
Sbjct: 638 SPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMY 686
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 131/329 (39%), Gaps = 40/329 (12%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K G +P+ T L+ Y+ GF +A ++ +L + + + ++ A R G
Sbjct: 492 MKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGL 551
Query: 130 FNEIISIIDQVS-----------C-------------RNADLLPEVYSRAIS-------- 157
+ + ++ ++ C R + L E+YS I
Sbjct: 552 WEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKT 611
Query: 158 ---CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
+ K L E E+ +GFS D T NA + Y R +++ +K S
Sbjct: 612 LVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSG 671
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
++ + Y + F + LR++ + +N ++ +Y N +MK
Sbjct: 672 FTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEAS 731
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R F M + G PD+ T+N +++ SMF + +++M P+ TY ++D +
Sbjct: 732 RIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWF 791
Query: 335 --LDKRLGRNLDFGLSKMNLDDSPVVSTD 361
L++R N F + NLD P V+ D
Sbjct: 792 CKLNRRDEAN-SFISNLRNLD--PSVTKD 817
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHM 315
+ L+ +YA N + + F ++ E G P L T+N+ + +M M W L + M
Sbjct: 223 YTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSM 282
Query: 316 KHESVGPDLVTYGCVVDA 333
K V PDL TY ++ +
Sbjct: 283 KSSGVAPDLYTYNTLISS 300
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 71/191 (37%), Gaps = 34/191 (17%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
V + IS GK+G+ + L ++ + G +D + I Y+ G E + +L
Sbjct: 187 VVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKL 246
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
++EG R TY +V L + W+ K+
Sbjct: 247 -------EEEGCRPTLITY--------------NVILNVYGKMGMPWS----------KI 275
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
L M +G PDL T+N + R S++ + E MK PD VTY +
Sbjct: 276 AGLVDS---MKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNAL 332
Query: 331 VDAYLDKRLGR 341
+D Y R R
Sbjct: 333 LDVYGKSRRPR 343
>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Brachypodium distachyon]
Length = 800
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/385 (19%), Positives = 161/385 (41%), Gaps = 14/385 (3%)
Query: 30 DLARKIIRYRKQEGFVDCAS----LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A + + K+ GF+ + ++ LG+K + ++ +++ + G P+ T +
Sbjct: 380 DEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTM 439
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ G V E + S L + L+ AYGR G + D+++
Sbjct: 440 LAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGF 499
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
Y+ +S +QG ++ + +M + GF + + + + +++ G+ +E
Sbjct: 500 TPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEA 559
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV-GLGRK-DLGNLLWNLLLLS 263
+ +R + + K R+ + ++V G K DL +++N +L
Sbjct: 560 IEKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDL--VIFNSMLSM 617
Query: 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
YA N + F + + G PDL T+N +++ + W+ L+ +K + PD
Sbjct: 618 YAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPD 677
Query: 324 LVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+V+Y V++ + + L + LS+M D P V T + + + S + +
Sbjct: 678 VVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVS 737
Query: 383 FKRQR-----KWTYRKLIAVYLKKQ 402
+ QR + TYR+++ Y K +
Sbjct: 738 YMIQRNLSPMELTYRRVVDSYCKAK 762
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 127/307 (41%), Gaps = 35/307 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + ++T+ S+G+LP+ T +M Y N G V EA +++ + + F+ V + ++
Sbjct: 347 AAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILG 406
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G+ FN ++ ++ ++S ++ ++ GK+G + L+ M S G +
Sbjct: 407 MLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVEL 466
Query: 183 DSATGNAFIIYYSRFGS---------------LTEMETAY----------GRLKRSRHLI 217
T N I Y R GS T T Y G ++ +I
Sbjct: 467 CRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSII 526
Query: 218 DK---EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL--GNLL--WNLLLLSYAGNFK- 269
+K EG + +Y + G + K++ G + W +L NFK
Sbjct: 527 NKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKC 586
Query: 270 --MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
++ ++R F + G PDL FN +++ M+ + +K + PDL+TY
Sbjct: 587 RRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITY 646
Query: 328 GCVVDAY 334
++D Y
Sbjct: 647 NSMMDMY 653
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 94/266 (35%), Gaps = 36/266 (13%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV-VWEELLSSSFVLSVQVLSDLM 121
A +L +K EG+ P + ++ Y G V + EE+ ++ S ++
Sbjct: 206 ALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEEMRAAGVEPDGFTASTVI 265
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
A GR G +E ++ + + R Y+ + FGK G LKEM G
Sbjct: 266 AACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCK 325
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
D+ T N Y+R G Y + + +GI +FTY
Sbjct: 326 PDAVTYNELAGSYARAG-------FYEEAAKCLDTMVSKGILPNAFTY------------ 366
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
N ++ +Y K+ F M + GF P + T+N+ +
Sbjct: 367 ----------------NTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGK 410
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTY 327
S F + L M P+ VT+
Sbjct: 411 KSRFNVMLEMLGEMSRSGCTPNRVTW 436
>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
Length = 821
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 161/383 (42%), Gaps = 14/383 (3%)
Query: 30 DLARKIIRYRKQEGFVD--CA--SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A R K+ G V C +++ LG+K + ++ ++S G P++ T +
Sbjct: 402 DKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTM 461
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ N G V+ E+ S F + + L+ AYGR G +++ + +++
Sbjct: 462 LAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGF 521
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
Y+ ++ ++G E E+ + +M S+GF + + + + Y++ G+ +E
Sbjct: 522 TPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEK 581
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+ +R + K R + ++ +L+N +L +A
Sbjct: 582 IEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFA 641
Query: 266 GNFKMKSLQREFMRM-SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
N KM E +R+ E+G PDL T+N ++R W L+ ++ PDL
Sbjct: 642 KN-KMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDL 700
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKMNLDD--SPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
V+Y V+ + + L + LS+M + +V+ + +V GKG F S E +
Sbjct: 701 VSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMF-SEVEEVIS 759
Query: 383 FK-----RQRKWTYRKLIAVYLK 400
+ R + TY+ ++ Y K
Sbjct: 760 YMIQHDCRPNELTYKIVVDGYCK 782
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 118/290 (40%), Gaps = 41/290 (14%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C++++ GR+ A + +KSEG + T +L+ + G EA + +E+
Sbjct: 283 CSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEME 342
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
++ + ++L+ AY R G E ID + + ++P Y+ I+ +GK G+
Sbjct: 343 KNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKG--IMPNAITYTTVINAYGKAGK 400
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ + ++M G + T NA + G L G+ R +ID
Sbjct: 401 EDKALSFFRQMKESGCVPNVCTYNAIL------GML-------GKKSRLEEMID------ 441
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM-KSLQREFMRMSEA 283
ML + +R G ++ WN +L+ GN M K + R F M
Sbjct: 442 ------------MLCD-MRSNGCAPN---SVTWN-TMLAMCGNKGMHKYVNRVFREMKSC 484
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
GF P+ TFN A+ R D+ E M P + TY +++A
Sbjct: 485 GFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNA 534
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 42/236 (17%)
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFG 160
+E+ + L V+ + ++ AY RIG + I++ +++ R L P + Y+ + +G
Sbjct: 198 DEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKM--RKTGLSPTLVTYNVMLDVYG 255
Query: 161 KQGQ-LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
K G+ + L EM S G D T + I R G L E + RLK
Sbjct: 256 KMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLK-------S 308
Query: 220 EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF-KMKSLQREFM 278
EG A +FTY N L L + AG + + S+ +E
Sbjct: 309 EGYVAGTFTY------------------------NSL--LQVFGKAGIYSEALSILKE-- 340
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M + PDL T+N A+ R + ++ M + + P+ +TY V++AY
Sbjct: 341 -MEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAY 395
>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
[Vitis vinifera]
gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 161/383 (42%), Gaps = 14/383 (3%)
Query: 30 DLARKIIRYRKQEGFVD--CA--SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A R K+ G V C +++ LG+K + ++ ++S G P++ T +
Sbjct: 402 DKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTM 461
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ N G V+ E+ S F + + L+ AYGR G +++ + +++
Sbjct: 462 LAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGF 521
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
Y+ ++ ++G E E+ + +M S+GF + + + + Y++ G+ +E
Sbjct: 522 TPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEK 581
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+ +R + K R + ++ +L+N +L +A
Sbjct: 582 IEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFA 641
Query: 266 GNFKMKSLQREFMRM-SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
N KM E +R+ E+G PDL T+N ++R W L+ ++ PDL
Sbjct: 642 KN-KMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDL 700
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKMNLDD--SPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
V+Y V+ + + L + LS+M + +V+ + +V GKG F S E +
Sbjct: 701 VSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMF-SEVEEVIS 759
Query: 383 FK-----RQRKWTYRKLIAVYLK 400
+ R + TY+ ++ Y K
Sbjct: 760 YMIQHDCRPNELTYKIVVDGYCK 782
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 118/290 (40%), Gaps = 41/290 (14%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C++++ GR+ A + +KSEG + T +L+ + G EA + +E+
Sbjct: 283 CSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEME 342
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
++ + ++L+ AY R G E ID + + ++P Y+ I+ +GK G+
Sbjct: 343 KNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKG--IMPNAITYTTVINAYGKAGK 400
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ + ++M G + T NA + G L G+ R +ID
Sbjct: 401 EDKALSFFRQMKESGCVPNVCTYNAIL------GML-------GKKSRLEEMID------ 441
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM-KSLQREFMRMSEA 283
ML + +R G ++ WN +L+ GN M K + R F M
Sbjct: 442 ------------MLCD-MRSNGCAPN---SVTWN-TMLAMCGNKGMHKYVNRVFREMKSC 484
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
GF P+ TFN A+ R D+ E M P + TY +++A
Sbjct: 485 GFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNA 534
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 42/236 (17%)
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFG 160
+E+ + L V+ + ++ AY RIG + I++ +++ R L P + Y+ + +G
Sbjct: 198 DEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKM--RKTGLSPTLVTYNVMLDVYG 255
Query: 161 KQGQ-LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
K G+ + L EM S G D T + I R G L E + RLK
Sbjct: 256 KMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLK-------S 308
Query: 220 EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF-KMKSLQREFM 278
EG A +FTY N L L + AG + + S+ +E
Sbjct: 309 EGYVAGTFTY------------------------NSL--LQVFGKAGIYSEALSILKE-- 340
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M + PDL T+N A+ R + ++ M + + P+ +TY V++AY
Sbjct: 341 -MEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAY 395
>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
Length = 784
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 116/282 (41%), Gaps = 26/282 (9%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+LV ++K G+ PD T L+ C EA V++E+ +S F + L+D Y
Sbjct: 229 ELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVY 288
Query: 125 GRIGCFNEIISII---DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
G+ +E I +I ++V C + + Y+ IS + K G LE +EM +G
Sbjct: 289 GKARRHDEAIEVIQEMERVGCPPSVV---TYNSLISSYVKDGLLEQAVALKQEMEVKGMK 345
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRS---------RHLIDKEGIRAVSFTYLKE 232
D T I R G + Y + R+ LI G+R +
Sbjct: 346 PDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAV 405
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
F F+ D+ + WN LL + N + F M +AG+ P+ T+
Sbjct: 406 FDEFRSAGFVPDI---------VTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTY 456
Query: 293 NIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVVDA 333
++SR +F DL + + + M + PD+ TY V+ A
Sbjct: 457 VSLISSYSRCGLF-DLAMQIYKRMMEAGIYPDVSTYNAVLSA 497
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 123/336 (36%), Gaps = 74/336 (22%)
Query: 71 KSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
+S G +PD T L+ + NG E V++E+ + ++ L+ +Y R G F
Sbjct: 410 RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLF 469
Query: 131 NEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS---- 184
+ + I ++ A + P+V Y+ +S + G+ E E EM R D
Sbjct: 470 DLAMQIYKRM--MEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 527
Query: 185 ----ATGNA---------------------------FIIYYSRFGSLTEMETAYGRLKRS 213
A NA ++ S+ +L E E A+ L++
Sbjct: 528 SLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQK 587
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLR-----DVGLGRKDLGNLL------------ 256
R +D + A+ Y K R + + L + L +L+
Sbjct: 588 RCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKC 647
Query: 257 ------------------WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+N ++ +Y +MK R F M +G PD+ T+NI +
Sbjct: 648 ENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 707
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ SMF + + +M + P+ TY +V+ Y
Sbjct: 708 YVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGY 743
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ K+ L + + SE + P N + L+L + + EA+ + EL
Sbjct: 527 SSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQ 586
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
L + VL+ ++ YG+ ++ I+ + +L Y+ + + + G E
Sbjct: 587 KRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEK 646
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
EN L E+ S G D + N I Y R G + E + +K S
Sbjct: 647 CENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCS 692
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVVDAYL 335
F RM ++G P + T+N+ +S+M++ W + L MK V PD TY ++
Sbjct: 195 FRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCR 254
Query: 336 DKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSS-EAFLEFKR----QRKW 389
+ L + +M P T + + +GK H + E E +R
Sbjct: 255 RRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVV 314
Query: 390 TYRKLIAVYLKKQL 403
TY LI+ Y+K L
Sbjct: 315 TYNSLISSYVKDGL 328
>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
Length = 766
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 116/282 (41%), Gaps = 26/282 (9%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+LV ++K G+ PD T L+ C EA V++E+ +S F + L+D Y
Sbjct: 211 ELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVY 270
Query: 125 GRIGCFNEIISII---DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
G+ +E I +I ++V C + + Y+ IS + K G LE +EM +G
Sbjct: 271 GKARRHDEAIEVIQEMERVGCPPSVV---TYNSLISSYVKDGLLEQAVALKQEMEVKGMK 327
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRS---------RHLIDKEGIRAVSFTYLKE 232
D T I R G + Y + R+ LI G+R +
Sbjct: 328 PDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAV 387
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
F F+ D+ + WN LL + N + F M +AG+ P+ T+
Sbjct: 388 FDEFRSAGFVPDI---------VTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTY 438
Query: 293 NIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVVDA 333
++SR +F DL + + + M + PD+ TY V+ A
Sbjct: 439 VSLISSYSRCGLF-DLAMQIYKRMMEAGIYPDVSTYNAVLSA 479
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 123/336 (36%), Gaps = 74/336 (22%)
Query: 71 KSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
+S G +PD T L+ + NG E V++E+ + ++ L+ +Y R G F
Sbjct: 392 RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLF 451
Query: 131 NEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS---- 184
+ + I ++ A + P+V Y+ +S + G+ E E EM R D
Sbjct: 452 DLAMQIYKRM--MEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYS 509
Query: 185 ----ATGNA---------------------------FIIYYSRFGSLTEMETAYGRLKRS 213
A NA ++ S+ +L E E A+ L++
Sbjct: 510 SLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQK 569
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLR-----DVGLGRKDLGNLL------------ 256
R +D + A+ Y K R + + L + L +L+
Sbjct: 570 RCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKC 629
Query: 257 ------------------WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+N ++ +Y +MK R F M +G PD+ T+NI +
Sbjct: 630 ENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 689
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ SMF + + +M + P+ TY +V+ Y
Sbjct: 690 YVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGY 725
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ K+ L + + SE + P N + L+L + + EA+ + EL
Sbjct: 509 SSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQ 568
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
L + VL+ ++ YG+ ++ I+ + +L Y+ + + + G E
Sbjct: 569 KRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEK 628
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
EN L E+ S G D + N I Y R G + E + +K S
Sbjct: 629 CENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCS 674
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVVDAYL 335
F RM ++G P + T+N+ +S+M++ W + L MK V PD TY ++
Sbjct: 177 FRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCR 236
Query: 336 DKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSS-EAFLEFKR----QRKW 389
+ L + +M P T + + +GK H + E E +R
Sbjct: 237 RRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVV 296
Query: 390 TYRKLIAVYLKKQL 403
TY LI+ Y+K L
Sbjct: 297 TYNSLISSYVKDGL 310
>gi|111154024|dbj|BAF02664.1| pentatricopeptide repeat protein [Physcomitrella patens]
gi|111185880|dbj|BAF02672.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 531
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 132/335 (39%), Gaps = 11/335 (3%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
+++ + G K K +N K D+ ++ R R C L+ G P L
Sbjct: 182 SYTALIQGFGKLKSYN--------KVTDVFSRMQRNRCPPDLKLCTVLISTYGNGGLPVL 233
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + +++GL PD AL+ YA G EA+ ++L V + + L+
Sbjct: 234 AESAMQYAQAQGLQPDAIAYTALVHAYAQEGLWEEAEKTLSDMLDVGIV-DDRPYAALVA 292
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
AYG+ G + + I++ + + +Y+ I+ K E L+ M + G
Sbjct: 293 AYGKAGLTDNVNKILETMKASGVEASTTLYNTLINIHSKAEAPEKARAVLQLMQADGCQC 352
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T + + YSR E+ G +KR+ + Y + + L
Sbjct: 353 DEITYTSVMEAYSRNKQPLMAESMMGEMKRAGIQPGPVSYGVLISAYCRAGRLGDAERIL 412
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
R + + ++N+++ YA + KM+S +R F M + G PD TFN + +
Sbjct: 413 RAMQNAKCKPTVEIYNMMISGYA-SAKMRSQAERMFQTMQDCGLRPDAVTFNTLISMYIK 471
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
M+ P+ VTY ++ AY D
Sbjct: 472 SRKRKQAEDCYIRMQQLGCKPNAVTYKILLKAYTD 506
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 119/282 (42%), Gaps = 26/282 (9%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+LV ++K G+ PD T L+ C EA V++E+ +S F + L+D Y
Sbjct: 229 ELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVY 288
Query: 125 GRIGCFNEIISII---DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
G+ +E I +I ++V C + + Y+ IS + K G LE +EM +G
Sbjct: 289 GKARRHDEAIEVIQEMERVGCPPSVV---TYNSLISSYVKDGLLEQAVALKQEMEVKGIK 345
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRS---------RHLIDKEGIRAVSFTYLKE 232
D T I R G + Y + R+ LI G+R K
Sbjct: 346 PDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRG------KF 399
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ + + LR G D+ + WN LL + N + F M +AG+ P+ T+
Sbjct: 400 PEMMAVFDELRSAGF-VPDI--VTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTY 456
Query: 293 NIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVVDA 333
++SR +F DL + + + M + PD+ TY V+ A
Sbjct: 457 VSLISSYSRCGLF-DLAMQIYKRMMEAGIYPDVSTYNAVLSA 497
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/339 (20%), Positives = 125/339 (36%), Gaps = 74/339 (21%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
+ ++S G +PD T L+ + NG E V++E+ + ++ L+ +Y R
Sbjct: 407 DELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 466
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS- 184
G F+ + I ++ A + P+V Y+ +S + G+ E E EM R D
Sbjct: 467 GLFDLAMQIYKRM--MEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEY 524
Query: 185 -------ATGNA---------------------------FIIYYSRFGSLTEMETAYGRL 210
A NA ++ S+ +L E E A+ L
Sbjct: 525 SYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLEL 584
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR-----DVGLGRKDLGNLL--------- 256
++ R +D + A+ Y K R + + L + L +L+
Sbjct: 585 RQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDC 644
Query: 257 ---------------------WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
+N ++ +Y +MK R F M +G PD+ T+NI
Sbjct: 645 EKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 704
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ SMF + + +M + P+ TY +V+ Y
Sbjct: 705 VKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGY 743
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ K+ L + + SE + P N + L+L + + EA+ + EL
Sbjct: 527 SSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQ 586
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
L + VL+ ++ YG+ ++ I+ + +L Y+ + + + G E
Sbjct: 587 KRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEK 646
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
EN L E+ S G D + N I Y R G + E + +K S
Sbjct: 647 CENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCS 692
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVVDAYL 335
F RM ++G P + T+N+ +S+M++ W + L MK V PD TY ++
Sbjct: 195 FRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCR 254
Query: 336 DKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSS-EAFLEFKR----QRKW 389
+ L + +M P T + + +GK H + E E +R
Sbjct: 255 RRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVV 314
Query: 390 TYRKLIAVYLKKQL 403
TY LI+ Y+K L
Sbjct: 315 TYNSLISSYVKDGL 328
>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
Length = 796
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 117/279 (41%), Gaps = 22/279 (7%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
LV+++K +G+ D T L+ C G EA +++E+ ++ F + L+D YG
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYG 302
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
+ E I ++ ++ NA P V Y+ IS + K G LE +EM RG D
Sbjct: 303 KARRHEEAIGVLKKM--ENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPD 360
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRS---------RHLIDKEGIRAVSFTYLKERK 234
T I R G + Y + R+ LI G+R FT +
Sbjct: 361 VVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRG-KFT-----E 414
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
++ + LR G D+ + WN LL + N + F M +AG+ P+ T+
Sbjct: 415 MMIVFDDLRSAGY-VPDV--VTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 471
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
++SR +F + M + PD+ TY V+ A
Sbjct: 472 LISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSA 510
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 125/291 (42%), Gaps = 30/291 (10%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A Q+ + +K+ G PD T +L+ Y EA V +++ ++ SV + L+
Sbjct: 275 AAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLIS 334
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
AY + G E + + ++ R + P+V Y+ IS + G+++ T EMV G
Sbjct: 335 AYVKDGLLEEALELKQEMEFRG--MKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGC 392
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID------------KEGIRA-VSF 227
S + T NA I + G TEM + L+ + ++ D + G+ + VS
Sbjct: 393 SPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSG 452
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
+ + +K + E RD + L+ SY+ + RM EAG +P
Sbjct: 453 VFKEMKKAGYIPE--RDT-----------YVSLISSYSRCGLFDQAMEIYKRMIEAGIYP 499
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
D++T+N A +R + M+ PD ++Y ++ AY + +
Sbjct: 500 DISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAK 550
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/305 (20%), Positives = 117/305 (38%), Gaps = 39/305 (12%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
+ ++S G +PD T L+ + NG E V++E+ + ++ L+ +Y R
Sbjct: 420 DDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 479
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS- 184
G F++ + I ++ A + P++ Y+ +S + G+ E EM R D
Sbjct: 480 GLFDQAMEIYKRMI--EAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDEL 537
Query: 185 -------ATGNA---------------------------FIIYYSRFGSLTEMETAYGRL 210
A NA ++ ++ SL+E E A+ L
Sbjct: 538 SYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQEL 597
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+R R +D + A+ Y K + + E L + + +N L+ Y+
Sbjct: 598 RRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDC 657
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ + + +G PD ++N A+ R + MK V PD+VTY
Sbjct: 658 EKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIF 717
Query: 331 VDAYL 335
+ +Y+
Sbjct: 718 IKSYV 722
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/282 (19%), Positives = 111/282 (39%), Gaps = 37/282 (13%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L ++ PD + +L+ YAN + + + + E++ + ++ L+
Sbjct: 520 AEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVL 579
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
++ +E ++ R L V + +S +GK ++ +E L M +
Sbjct: 580 VNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINH 639
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
+AT N+ + YSR G + E +K S G+R ++Y
Sbjct: 640 SAATYNSLMHMYSRLGDCEKCEAILTEIKSS-------GMRPDRYSY------------- 679
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
N ++ +Y +MK R F M +G PD+ T+NI ++
Sbjct: 680 ---------------NTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVAN 724
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
MF + + ++ + P+ TY +++ Y R GR ++
Sbjct: 725 LMFEEAIDLVRYLVAQGCKPNERTYNSILEGYC--RHGRMVE 764
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 70/334 (20%), Positives = 119/334 (35%), Gaps = 52/334 (15%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC-FNEIIS 135
PD S AL+ ++ G +A V+ ++ ++ + ++ Y ++ + E++
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVV 242
Query: 136 IIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
++D + +L Y+ ISC ++G EM + GF D T N+ + Y
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVY- 301
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL 255
G E A G LK+ ++ G TY ++ +++D L
Sbjct: 302 --GKARRHEEAIGVLKK----MENAGCTPSVVTYNS-----LISAYVKD---------GL 341
Query: 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315
L L L F+ G PD+ T+ R+ + M
Sbjct: 342 LEEALELKQEMEFR--------------GMKPDVVTYTTLISGLDRIGKIDAALATYSEM 387
Query: 316 KHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD------SPVVSTDPYVFEAFG 369
P+L TY ++ K G F + DD P V T + FG
Sbjct: 388 VRNGCSPNLCTYNALI-----KMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFG 442
Query: 370 KGDFHSS-SEAFLEFKR----QRKWTYRKLIAVY 398
+ S S F E K+ + TY LI+ Y
Sbjct: 443 QNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSY 476
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 6/169 (3%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ KK L + ++ + P N + L+L + E + ++EL
Sbjct: 540 SSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRR 599
Query: 108 SSFVLSVQVLSDLMDAYGR---IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
L + VL+ ++ YG+ + E+++++ + S ++ Y+ + + + G
Sbjct: 600 RRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHS---AATYNSLMHMYSRLGD 656
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
E E L E+ S G D + N I Y R G + E + +K S
Sbjct: 657 CEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCS 705
>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 696
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 35/286 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ LG + H A L ++ G P AL+ Y G + +A+ V E+ +
Sbjct: 297 AVILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKA 356
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
Q S L+DAY G + ++ ++ N + VYSR ++ + +G+ +
Sbjct: 357 GVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKS 416
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
LK+M S G D N I + ++ L + R+ EGIR + T
Sbjct: 417 FQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERML-------SEGIRPDTVT 469
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
WN L+ + + + + F M + G+ P
Sbjct: 470 ----------------------------WNTLINCHCKSGRHNMAEELFGEMQQRGYSPC 501
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+TT+NI + + + L L M+ + + P+ +TY +VD Y
Sbjct: 502 ITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVY 547
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 120/311 (38%), Gaps = 41/311 (13%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +V+ ++ G+ PD T L+ YA+ G A++V +E+ +S+ + V S ++
Sbjct: 346 AEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILA 405
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+Y G + + ++ + Y+ I FGK L+ T + M+S G
Sbjct: 406 SYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRP 465
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL-------------------------- 216
D+ T N I + + G E +G +++ +
Sbjct: 466 DTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFL 525
Query: 217 --IDKEGIRAVSFTYL-------KERKF---FMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ +G+ S TY K +F E L+ G + ++N L+ +Y
Sbjct: 526 SKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPT---STMYNALINAY 582
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
A + F M+ G P L N AF + L++MK ++ PD+
Sbjct: 583 AQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDV 642
Query: 325 VTYGCVVDAYL 335
VTY ++ A +
Sbjct: 643 VTYTTLMKALI 653
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 25 HPKNG--DLARKIIRYRKQEGFVDCAS----LVEDLGRKKKPHLAHQLVNTVKSEGLLPD 78
H K+G ++A ++ +Q G+ C + ++ +G +++ ++ ++S+GLLP+
Sbjct: 477 HCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPN 536
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG 128
+ T L+ Y +G +A E L S+ F + + + L++AY + G
Sbjct: 537 SITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRG 586
>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 917
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 113/260 (43%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL P +ST +L++ G + EA + +++ F ++ + L+D Y RIG N
Sbjct: 528 GLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMA 587
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
S+ +++ R ++ I+ G + + +M+ +GF ++ N+ I
Sbjct: 588 ESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGG 647
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
+ + G L E + + L D + + K+ + + E D+
Sbjct: 648 FCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPD 707
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ +N L+ Y F + M+MS++G+ PDLTT+NIR + + + LE
Sbjct: 708 IVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILE 767
Query: 314 HMKHESVGPDLVTYGCVVDA 333
+ + P+ VTY +++A
Sbjct: 768 ELISVGIVPNTVTYNTMINA 787
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 115/273 (42%), Gaps = 21/273 (7%)
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
++A L N +K G+ PD A + +G + +A V+ ++L FV + V + L
Sbjct: 585 NMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSL 644
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQGQLELMENTLKEMVSR 178
+ + ++G NE + ++ +++ R LLP++++ + G KQG+++L T +M
Sbjct: 645 IGGFCKVGKLNEALKLVREMNKRG--LLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRM 702
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF--- 235
G S D T N I Y + + + ++ S D Y RK
Sbjct: 703 GLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRA 762
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
M+ E L VG+ + N + +++ N + ++ + F P+ T N+
Sbjct: 763 VMILEELISVGI----VPNTVTYNTMINAVCNVILDHAMILTAKLLKMAFVPNTVTVNVL 818
Query: 296 AVAFSRMSM-----FW-----DLHLSLEHMKHE 318
F + M FW ++HL + H+
Sbjct: 819 LSQFCKQGMPEKAIFWGQKLSEIHLDFDETTHK 851
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 116/296 (39%), Gaps = 20/296 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM---LCYANNGFVLEAQVVWEEL 105
+LV R K ++L+ + GLL D S+LC + LC+A G EA + E L
Sbjct: 433 TLVAGHYRYGKEEDGNRLLRDLSVSGLLHD-SSLCDVTVAGLCWA--GRYDEAMKLLENL 489
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
L SV + ++ AYG G + S + ++G L
Sbjct: 490 LGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSL 549
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG---- 221
+ L +M+ +GF V + + Y R G++ E+ + +K D
Sbjct: 550 DEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAF 609
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
I + + L + + + LR + N ++N L+ + K+ + M+
Sbjct: 610 INGLCISGLMTDAYDVFSDMLRKGFVPN----NFVYNSLIGGFCKVGKLNEALKLVREMN 665
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE---HMKHESVGPDLVTYGCVVDAY 334
+ G PD+ T N+ + + L++E M + PD+VTY ++D Y
Sbjct: 666 KRGLLPDIFTVNMIICGLCKQG---RMKLAIETFMDMCRMGLSPDIVTYNTLIDGY 718
>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 120/282 (42%), Gaps = 4/282 (1%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L+ R K A ++ +++ G P+ T AL+ + N G E V+EE+ +
Sbjct: 213 TTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKN 272
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
S V + + L+ +G+ G +E+ + ++ + A +PE Y+ IS + + G
Sbjct: 273 SCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEM--KRAGFVPERDTYNTLISAYSRCGSF 330
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ + K M+ G + D +T NA + +R G + E + +K R ++ ++
Sbjct: 331 DQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSL 390
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y ++ + ++ G + +L L+L + + + F+ + GF
Sbjct: 391 LHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGF 450
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
PDL+T N + R MF + L M P L TY
Sbjct: 451 SPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATY 492
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 105/268 (39%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L +K+ G+LPD T L+ C EA V++++ S FV + L+D YG
Sbjct: 91 LFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYG 150
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ E + ++ ++ Y+ IS + + G L+ +MV G ++D
Sbjct: 151 KSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVF 210
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T + + R G + ++ + + A+ + KF + + ++
Sbjct: 211 TYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEI 270
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ WN LL + N + F M AGF P+ T+N A+SR F
Sbjct: 271 KNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSF 330
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ M + PDL TY V+ A
Sbjct: 331 DQAMDIYKRMLEAGITPDLSTYNAVLAA 358
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 106/261 (40%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ PD ST A++ A G +++ ++ E+ + L+ AY +
Sbjct: 344 GITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRM 403
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+++ +++ + + + K L E E+ +GFS D +T NA +
Sbjct: 404 LALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSI 463
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
Y R T+ + S ++ + + + F E L+++
Sbjct: 464 YGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPD 523
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ +N ++ +Y N +MK R F M E+G PD+ T+N +++ SMF D +
Sbjct: 524 TISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVR 583
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
+M P+ TY VVD Y
Sbjct: 584 YMIKHGCKPNQNTYNSVVDGY 604
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 92/400 (23%), Positives = 164/400 (41%), Gaps = 56/400 (14%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A ++ LG++ K +A L+N + +G D +L+ +NG EA +V++++
Sbjct: 2 AVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEE 61
Query: 108 SSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
++ + +++ YG++G +N+I + + + +NA +LP+ Y+ I+C +
Sbjct: 62 EGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGM--KNAGVLPDEYTYNTLITCCRRGSL 119
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSR-------FGSLTEME------------- 204
E K+M S GF D T NA + Y + L EME
Sbjct: 120 HEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNS 179
Query: 205 --TAYGR---LKRSRHLIDK---EGIRAVSFTYL----------KERKFFMLGEFLRDVG 246
+AY R LK + L ++ GI FTY K+ + +R G
Sbjct: 180 LISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAG 239
Query: 247 LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW 306
+ ++ +N L+ + K + + F + + PD+ T+N F + M
Sbjct: 240 C-KPNI--CTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDS 296
Query: 307 DLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG---RNLDFGLSKMNLDDSPVVSTDPY 363
++ + MK P+ TY ++ AY R G + +D + +P +ST
Sbjct: 297 EVSGVFKEMKRAGFVPERDTYNTLISAY--SRCGSFDQAMDIYKRMLEAGITPDLSTYNA 354
Query: 364 VFEAFGKGDFHSSSEA-FLEFKRQR----KWTYRKLIAVY 398
V A +G SE F E K R + TY L+ Y
Sbjct: 355 VLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAY 394
>gi|125542133|gb|EAY88272.1| hypothetical protein OsI_09727 [Oryza sativa Indica Group]
Length = 450
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 150/370 (40%), Gaps = 64/370 (17%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A L+ LG+ ++P A L + SE L P AL+ Y +G + EA E++
Sbjct: 93 ARLLMMLGKCRQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLLDEALATVEQMKG 152
Query: 108 SSFVLSVQ-VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + S L++ ++ F+ I +I+D++S +++ I +GK G LE
Sbjct: 153 VADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNAVIHNAIIDGYGKAGMLE 212
Query: 167 LMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGS-LTEMETAYGRLKRSRHLIDKEGIRA 224
MEN L M+ G SV D T N+ I Y G+ + EME Y + G+
Sbjct: 213 EMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLM-------GVEP 265
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR-MSEA 283
+ T+ N+++ SY GN KM ++ M +
Sbjct: 266 DTQTF----------------------------NIMIKSY-GNAKMHDKMMSVLKYMKKH 296
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY-----LDK- 337
F P + TFNI +F R + MK + V P+ +TY +V+ Y LDK
Sbjct: 297 FFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFLDKV 356
Query: 338 ----RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKRQR----K 388
R N D L D+P + V +A+ K GD E K ++ K
Sbjct: 357 PGIIRQTENTDVVL------DTPFFNC---VIDAYAKSGDIKIMEEMLQLMKEKKCKPDK 407
Query: 389 WTYRKLIAVY 398
TY +I Y
Sbjct: 408 VTYTTMIQAY 417
>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g19290-like [Cucumis
sativus]
Length = 885
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 113/260 (43%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL P +ST +L++ G + EA + +++ F ++ + L+D Y RIG N
Sbjct: 497 GLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMA 556
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
S+ +++ R ++ I+ G + + +M+ +GF ++ N+ I
Sbjct: 557 ESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGG 616
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
+ + G L E + + L D + + K+ + + E D+
Sbjct: 617 FCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPD 676
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ +N L+ Y F + M+MS++G+ PDLTT+NIR + + + LE
Sbjct: 677 IVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILE 736
Query: 314 HMKHESVGPDLVTYGCVVDA 333
+ + P+ VTY +++A
Sbjct: 737 ELISVGIVPNTVTYNTMINA 756
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 21/273 (7%)
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
++A L N +K G+ PD A + +G + +A V+ ++L FV + V + L
Sbjct: 554 NMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSL 613
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS-RAISC-FGKQGQLELMENTLKEMVSR 178
+ + ++G NE + ++ +++ R LLP++++ I C KQG+++L T +M
Sbjct: 614 IGGFCKVGKLNEALKLVREMNKRG--LLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRM 671
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF--- 235
G S D T N I Y + + + ++ S D Y RK
Sbjct: 672 GLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRA 731
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
M+ E L VG+ + N + +++ N + ++ + F P+ T N+
Sbjct: 732 VMILEELISVGI----VPNTVTYNTMINAVCNVILDHAMILTAKLLKMAFVPNTVTVNVL 787
Query: 296 AVAFSRMSM-----FW-----DLHLSLEHMKHE 318
F + M FW ++HL + H+
Sbjct: 788 LSQFCKQGMPEKAIFWGQKLSEIHLDFDETTHK 820
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 116/296 (39%), Gaps = 20/296 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM---LCYANNGFVLEAQVVWEEL 105
+LV R K ++L+ + GLL D S+LC + LC+A G EA + E L
Sbjct: 402 TLVAGHYRYGKEEDGNRLLRDLSVSGLLHD-SSLCDVTVAGLCWA--GRYDEAMKLLENL 458
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
L SV + ++ AYG G + S + ++G L
Sbjct: 459 LEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSL 518
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG---- 221
+ L +M+ +GF V + + Y R G++ E+ + +K D
Sbjct: 519 DEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAF 578
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
I + + L + + + LR + N ++N L+ + K+ + M+
Sbjct: 579 INGLCISGLMTDAYDVFSDMLRKGFVPN----NFVYNSLIGGFCKVGKLNEALKLVREMN 634
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE---HMKHESVGPDLVTYGCVVDAY 334
+ G PD+ T N+ + + L++E M + PD+VTY ++D Y
Sbjct: 635 KRGLLPDIFTVNMIICGLCKQG---RMKLAIETFMDMCRMGLSPDIVTYNTLIDGY 687
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 22/279 (7%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
LV+++K +G+ D T L+ C G EA V++E+ ++ F + L+D YG
Sbjct: 242 LVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYG 301
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
+ E I ++ ++ NA P V Y+ IS + K G LE +EM RG D
Sbjct: 302 KARKHEEAIGVLKRM--ENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPD 359
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRS---------RHLIDKEGIRAVSFTYLKERK 234
T I R G + Y + R+ LI G+R FT +
Sbjct: 360 VVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRG-KFT-----E 413
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
+ + LR G D+ + WN LL + N + F M +AG+ P+ T+
Sbjct: 414 MMAVFDDLRSAGY-VPDV--VTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 470
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
++SR +F + M + PD+ TY V+ A
Sbjct: 471 LISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSA 509
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 123/291 (42%), Gaps = 30/291 (10%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A Q+ + +K+ G PD T +L+ Y EA V + + ++ SV + L+
Sbjct: 274 AAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLIS 333
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
AY + G E + + ++ R + P+V Y+ IS + G+++ T EMV G
Sbjct: 334 AYVKDGLLEEALELKQEMEFRG--MKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGC 391
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID------------KEGIRA-VSF 227
S + T NA I + G TEM + L+ + ++ D + G+ + VS
Sbjct: 392 SPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSG 451
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
+ + +K + E RD + L+ SY+ + RM EAG +P
Sbjct: 452 VFKEMKKAGYIPE--RDTYVS-----------LISSYSRCGLFDQAMEIYKRMIEAGIYP 498
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
D++T+N A +R + M PD ++Y ++ AY + +
Sbjct: 499 DISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAK 549
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/349 (19%), Positives = 129/349 (36%), Gaps = 76/349 (21%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
+ ++S G +PD T L+ + NG E V++E+ + ++ L+ +Y R
Sbjct: 419 DDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 478
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS- 184
G F++ + I ++ A + P++ Y+ +S + G+ E E EMV R D
Sbjct: 479 GLFDQAMEIYKRMI--EAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDEL 536
Query: 185 -------ATGNA---------------------------FIIYYSRFGSLTEMETAYGRL 210
A NA ++ ++ +L E E A+ L
Sbjct: 537 SYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQEL 596
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL-----RDVGLGRKDLGNLL--------- 256
+R R +D + A+ Y K + + E L + +L+
Sbjct: 597 RRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDC 656
Query: 257 ---------------------WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
+N ++ +Y +MK R F M +G PD+ T+NI
Sbjct: 657 EKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIF 716
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
++ MF + + ++ + P+ T+ ++ Y R GR ++
Sbjct: 717 IKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGY--SRHGRMVE 763
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/266 (18%), Positives = 105/266 (39%), Gaps = 15/266 (5%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC-FNEIIS 135
PD S AL+ ++ G +A V++ ++ ++ + + AY ++ + E+++
Sbjct: 182 PDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVA 241
Query: 136 IIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
++D + + Y+ ISC ++G EM + GF D T N+ + Y
Sbjct: 242 LVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVY- 300
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL--- 252
G + E A G LKR ++ G TY ++ L + ++++
Sbjct: 301 --GKARKHEEAIGVLKR----MENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFR 354
Query: 253 ----GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
+ + L+ K+ + + M G P+L T+N F ++
Sbjct: 355 GMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEM 414
Query: 309 HLSLEHMKHESVGPDLVTYGCVVDAY 334
+ ++ PD+VT+ ++ +
Sbjct: 415 MAVFDDLRSAGYVPDVVTWNTLLSVF 440
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 11/136 (8%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVVDAYL 335
F RM + G P L T+N+ A+S+MS+ W ++L + MK + + D TY ++
Sbjct: 207 FQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCR 266
Query: 336 DKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKW----- 389
+ L R +M P T + + +GK H EA KR
Sbjct: 267 RRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKH--EEAIGVLKRMENAGCTPS 324
Query: 390 --TYRKLIAVYLKKQL 403
TY LI+ Y+K L
Sbjct: 325 VVTYNSLISAYVKDGL 340
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 119/274 (43%), Gaps = 4/274 (1%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L++ + + GL + +++ + G V +A V E+++ VL V + +M
Sbjct: 304 AIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMS 363
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ R G + D++ R Y+ I+ + G+L+ E L+EM +G V
Sbjct: 364 GFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDV 423
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ T I Y + G +TE + ++ + R + A+S K+ E L
Sbjct: 424 DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELL 483
Query: 243 RDVGLGRKDLGNLLWNLLL--LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
++ +L +N L+ L AGN ++ R + M EAG PD+ T+ A
Sbjct: 484 HEMCSKGLELNIFTYNSLINGLCKAGN--LEQAMRTMIDMDEAGLKPDVYTYTTIIGALC 541
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ H L+ M + + P +VTY +++ +
Sbjct: 542 QSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RK A + ++ GL D T AL+ G + EA+ V +E+ +
Sbjct: 367 RKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAV 426
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
+ L+D Y ++G E + +++ + Y+ KQG + L EM
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM 486
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK---- 231
S+G ++ T N+ I + G+L + R+ +D+ G++ +TY
Sbjct: 487 CSKGLELNIFTYNSLINGLCKAGNLEQA-------MRTMIDMDEAGLKPDVYTYTTIIGA 539
Query: 232 -------ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+R +L E L D G+ + +N+L+ + + +++ +R M E
Sbjct: 540 LCQSKELDRAHSLLQEML-DKGIKPTIVT---YNVLMNGFCMSGRVEGGKRLLEWMLEKN 595
Query: 285 FHPDLTTFN 293
HP+ TT+N
Sbjct: 596 IHPNTTTYN 604
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 40/246 (16%)
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
LC A G + +A +++E+ S V++ ++ + Y + I ++ +++ R +
Sbjct: 263 LCTA--GRIKDAHQLFDEMASPPDVVTYGIM---VHGYCTLSELETAIKLLSEMAARGLE 317
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
L P Y+ I+ +GQ+ +++MV G +D+A + + R G L
Sbjct: 318 LNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNW 377
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
+ ++ K G+ A TY GL R AG
Sbjct: 378 FDEMQ-------KRGLAADGVTYTALIN-----------GLCR---------------AG 404
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
++K +R M + G D T+ + + ++ + L M + V P++VT
Sbjct: 405 --ELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT 462
Query: 327 YGCVVD 332
Y + D
Sbjct: 463 YTALSD 468
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 119/274 (43%), Gaps = 4/274 (1%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L++ + + GL + +++ + G V +A V E+++ VL V + +M
Sbjct: 304 AIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMS 363
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ R G + D++ R Y+ I+ + G+L+ E L+EM +G V
Sbjct: 364 GFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDV 423
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ T I Y + G +TE + ++ + R + A+S K+ E L
Sbjct: 424 DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELL 483
Query: 243 RDVGLGRKDLGNLLWNLLL--LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
++ +L +N L+ L AGN ++ R + M EAG PD+ T+ A
Sbjct: 484 HEMCSKGLELNIFTYNSLINGLCKAGN--LEQAMRTMIDMDEAGLKPDVYTYTTIIGALC 541
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ H L+ M + + P +VTY +++ +
Sbjct: 542 QSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RK A + ++ GL D T AL+ G + EA+ V +E+ +
Sbjct: 367 RKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAV 426
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
+ L+D Y ++G E + +++ + Y+ KQG + L EM
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM 486
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK---- 231
S+G ++ T N+ I + G+L + R+ +D+ G++ +TY
Sbjct: 487 CSKGLELNIFTYNSLINGLCKAGNLEQA-------MRTMIDMDEAGLKPDVYTYTTIIGA 539
Query: 232 -------ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+R +L E L D G+ + +N+L+ + + +++ +R M E
Sbjct: 540 LCQSKELDRAHSLLQEML-DKGIKPTIVT---YNVLMNGFCMSGRVEGGKRLLEWMLEKN 595
Query: 285 FHPDLTTFN 293
HP+ TT+N
Sbjct: 596 IHPNTTTYN 604
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 40/246 (16%)
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
LC A G + +A +++E+ S V++ ++ + Y + I ++ +++ R +
Sbjct: 263 LCTA--GRIKDAHQLFDEMASPPDVVTYGIM---VHGYCTLSELETAIKLLSEMAARGLE 317
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
L P Y+ I+ +GQ+ +++MV G +D+A + + R G L
Sbjct: 318 LNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNW 377
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
+ ++ K G+ A TY GL R AG
Sbjct: 378 FDEMQ-------KRGLAADGVTYTALIN-----------GLCR---------------AG 404
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
++K +R M + G D T+ + + ++ + L M + V P++VT
Sbjct: 405 --ELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT 462
Query: 327 YGCVVD 332
Y + D
Sbjct: 463 YTALSD 468
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 119/274 (43%), Gaps = 4/274 (1%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L++ + + GL + +++ + G V +A V E+++ VL V + +M
Sbjct: 304 AIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMS 363
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ R G + D++ R Y+ I+ + G+L+ E L+EM +G V
Sbjct: 364 GFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDV 423
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ T I Y + G +TE + ++ + R + A+S K+ E L
Sbjct: 424 DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELL 483
Query: 243 RDVGLGRKDLGNLLWNLLL--LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
++ +L +N L+ L AGN ++ R + M EAG PD+ T+ A
Sbjct: 484 HEMCSKGLELNIFTYNSLINGLCKAGN--LEQAMRTMIDMDEAGLKPDVYTYTTIIGALC 541
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ H L+ M + + P +VTY +++ +
Sbjct: 542 QSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 26/239 (10%)
Query: 68 NTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
+ ++ GL D T AL+ LC A G + EA+ V +E+ + + L+D Y
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRA--GELKEAERVLQEMEDKGLDVDAVTYTVLIDGYC 436
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
++G E + +++ + Y+ KQG + L EM S+G ++
Sbjct: 437 KVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIF 496
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK-----------ERK 234
T N+ I + G+L + R+ +D+ G++ +TY +R
Sbjct: 497 TYNSLINGLCKAGNLEQA-------MRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRA 549
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+L E L D G+ + +N+L+ + + +++ +R M E HP+ TT+N
Sbjct: 550 HSLLQEML-DKGIKPTIVT---YNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYN 604
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 40/246 (16%)
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
LC A G + +A +++E+ S V++ ++ + Y + I ++ +++ R +
Sbjct: 263 LCTA--GRIKDAHQLFDEMASPPDVVTYGIM---VHGYCTLSELETAIKLLSEMAARGLE 317
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
L P Y+ I+ +GQ+ +++MV G +D+A + + R G L
Sbjct: 318 LNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNW 377
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
+ ++ K G+ A TY L N L AG
Sbjct: 378 FDEMQ-------KRGLAADGVTY------------------------TALIN--GLCRAG 404
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
++K +R M + G D T+ + + ++ + L M + V P++VT
Sbjct: 405 --ELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT 462
Query: 327 YGCVVD 332
Y + D
Sbjct: 463 YTALSD 468
>gi|168039319|ref|XP_001772145.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676476|gb|EDQ62958.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 313
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 13/252 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-L 106
A ++ GR +P LA L + ++ G+ + AL+ Y N +A ++E + +
Sbjct: 20 AKMISFAGRINQPQLAADLFDEMEKRGIKKTAVSYNALIHSYGRNNEPQKALQLFEYMKV 79
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
+ ++ + L+ Y R+G E+ I + C A+ +P+ Y+ I + + GQ
Sbjct: 80 TVDCQPTLVTYNTLISMYSRMGATEEMKKIF--LDCTEAEFVPDRHTYNALIWGYMRAGQ 137
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
L ME T E+ ++ F+ D T NA II Y+R ++ +ME ++ I+ + A
Sbjct: 138 LNEMEVTFNELQAKKFNADVITYNALIIGYARANAVDKMEVVLSSMQAVGIPINTMALHA 197
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL----WNLLLLSYAGNFKMKSLQREFMRM 280
+ Y + + L + + V KD G +L +N+L+ Y + +++ F M
Sbjct: 198 LIMAYSRAGTYDRLAKTMEVV----KDAGWMLQPATYNILISEYGKVGYLDKMEQAFREM 253
Query: 281 SEAGFHPDLTTF 292
A P TF
Sbjct: 254 MNASVKPSFETF 265
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/258 (18%), Positives = 98/258 (37%), Gaps = 40/258 (15%)
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
P+ Y++ IS G+ Q +L + EM RG + + NA I Y R
Sbjct: 16 PKEYAKMISFAGRINQPQLAADLFDEMEKRGIKKTAVSYNALIHSYGRNN---------- 65
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+ +K L E+++ + L + +N L+ Y+
Sbjct: 66 ----------------------EPQKALQLFEYMKVTVDCQPTL--VTYNTLISMYSRMG 101
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+ +++ F+ +EA F PD T+N + R ++ ++ ++ + D++TY
Sbjct: 102 ATEEMKKIFLDCTEAEFVPDRHTYNALIWGYMRAGQLNEMEVTFNELQAKKFNADVITYN 161
Query: 329 CVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY-VFEAFGKGDFHSSSEAFLEFKRQR 387
++ Y ++ LS M P+ + + + A+ + + +E +
Sbjct: 162 ALIIGYARANAVDKMEVVLSSMQAVGIPINTMALHALIMAYSRAGTYDRLAKTMEVVKDA 221
Query: 388 KW-----TYRKLIAVYLK 400
W TY LI+ Y K
Sbjct: 222 GWMLQPATYNILISEYGK 239
>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
Length = 477
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 140/343 (40%), Gaps = 49/343 (14%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-SSFVL 112
LG+ K+P A L + SEGL P AL+ Y +G + +A +E+ S S
Sbjct: 137 LGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHKAISTVDEMKSISDCKP 196
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
V S L+D R+ F+ + I+ +SC Y+ I+ FGK E ME+ L
Sbjct: 197 DVHTYSILIDCCTRLRRFDLLKKILADMSCLGITCNTVTYNTIINGFGKAKMFEQMESLL 256
Query: 173 KEMV-SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
EM+ S D T N FI Y + +ME Y + GI +TY
Sbjct: 257 LEMIESDSCPPDLITFNTFIRAYGNSEQIEKMEKWYKEFQLM-------GIEPDIWTY-- 307
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--AGNF-KMKSLQREFMRMSEAGFHPD 288
N ++ SY AG + KMKS+ M + F P
Sbjct: 308 --------------------------NSMISSYGKAGMYDKMKSV---LNFMEKRFFSPT 338
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348
+ T N +F R ++ ++MK + + P+ VTY +V+AY +D L
Sbjct: 339 IVTMNTIIDSFGRAGNIEEMEEYFKNMKFQGMKPNSVTYCSLVNAYGKSGDLEKVDSILR 398
Query: 349 KMNLDDSPVVSTDPY---VFEAFGK-GDFHSSSEAFLEFKRQR 387
+ +++S VV P + +G+ G+ E FLE K +
Sbjct: 399 Q--IENSDVVPDTPLFNCLINVYGQAGNVRKMGELFLEMKENK 439
>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 827
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 106/268 (39%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
LV+ +KS G+ PD+ T L+ C EA V+EE+ S F + L+D YG
Sbjct: 275 LVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYG 334
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ E + ++ ++ Y+ IS + + G L +MV +G D
Sbjct: 335 KSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVF 394
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T + + + G +G ++ + + A+ + +F + + ++
Sbjct: 395 TYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEI 454
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ + WN LL + N + F M AGF P+ TFN A+SR F
Sbjct: 455 EICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSF 514
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ M V PDL +Y V+ A
Sbjct: 515 QQAMAVYKRMLEAGVTPDLSSYNAVLAA 542
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 129/321 (40%), Gaps = 46/321 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ +++ G P+ T AL+ + N G E V+EE+ + + + L+
Sbjct: 412 AMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLA 471
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+G+ G +E+ + ++ + A +PE ++ IS + + G + K M+ G
Sbjct: 472 VFGQNGMDSEVSGVFKEM--KRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGV 529
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ D ++ NA + +R G + E + +K R ++ ++ Y ++ +
Sbjct: 530 TPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHT 589
Query: 241 FLRDV--GL----------------------------------GRKDLGNLLWNLLLLSY 264
++ GL G DL L N ++ Y
Sbjct: 590 LAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKGSPDLSTL--NAMIAIY 647
Query: 265 AGNFKMKSLQREFMR-MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
G +M + E + M+E+GF P L T+N SR F L+ + + + PD
Sbjct: 648 -GRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPD 706
Query: 324 LVTYGCVVDAYLDKRLGRNLD 344
L++Y V+ AY R GR D
Sbjct: 707 LISYNTVIFAYC--RNGRMKD 725
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/313 (19%), Positives = 125/313 (39%), Gaps = 2/313 (0%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ R A +L + + +G+ PD T L+ + G A ++ E+ ++
Sbjct: 363 SLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAA 422
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++ + L+ +G G F E++ + +++ N ++ ++ FG+ G +
Sbjct: 423 GCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEV 482
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
KEM GF + T N I YSR GS + Y R+ + D AV
Sbjct: 483 SGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAA 542
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
+ + + ++ GR L + LL +YA + +++ + + P
Sbjct: 543 LARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPV 602
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348
+ S+ + + + E +K + PDL T ++ Y +++ + L+
Sbjct: 603 PVLLKTLVLVNSKCDLLMETEHAFEELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILN 661
Query: 349 KMNLDD-SPVVST 360
MN SP ++T
Sbjct: 662 FMNESGFSPSLAT 674
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 110/264 (41%), Gaps = 7/264 (2%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ PD S+ A++ A G +++ V+ E+ + L+ AY +
Sbjct: 528 GVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERM 587
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
++ +++ + +P + + K L E+ +E+ +G S D +T NA I
Sbjct: 588 HTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKG-SPDLSTLNAMIAI 646
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV---GLGRK 250
Y R + + + S ++ + + + F E L+++ GL +
Sbjct: 647 YGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGL-KP 705
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
DL + +N ++ +Y N +MK R F M G PD+ T+N +++ S+F D
Sbjct: 706 DL--ISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIG 763
Query: 311 SLEHMKHESVGPDLVTYGCVVDAY 334
+ +M + TY +VD Y
Sbjct: 764 VVRYMIKHGCKRNQNTYNSIVDGY 787
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 222 IRAVSFTYL-KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
+ AV T L KE K L ++ DL + L+ +YA N + + F +M
Sbjct: 184 VVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKM 243
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH-MKHESVGPDLVTYGCVV 331
E G P L T+N+ + +M M W L H MK V PD TY ++
Sbjct: 244 EEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLI 295
>gi|115450301|ref|NP_001048751.1| Os03g0115300 [Oryza sativa Japonica Group]
gi|113547222|dbj|BAF10665.1| Os03g0115300 [Oryza sativa Japonica Group]
Length = 442
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 150/370 (40%), Gaps = 64/370 (17%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A L+ LG+ ++P A L + SE L P AL+ Y +G + +A E++
Sbjct: 93 ARLLMMLGKCQQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLLDQALATVEQMKG 152
Query: 108 SSFVLSVQ-VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + S L++ ++ F+ I +I+D++S +++ I +GK G LE
Sbjct: 153 VADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNAVIHNAIIDGYGKAGMLE 212
Query: 167 LMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGS-LTEMETAYGRLKRSRHLIDKEGIRA 224
MEN L M+ G SV D T N+ I Y G+ + EME Y + G+
Sbjct: 213 EMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLM-------GVEP 265
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR-MSEA 283
+ T+ N+++ SY GN KM ++ M +
Sbjct: 266 DTQTF----------------------------NIMIKSY-GNAKMHDKMMSVLKYMKKH 296
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY-----LDK- 337
F P + TFNI +F R + MK + V P+ +TY +V+ Y LDK
Sbjct: 297 FFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFLDKV 356
Query: 338 ----RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKRQR----K 388
R N D L D+P + V +A+ K GD E K ++ K
Sbjct: 357 PGIIRQTENTDVVL------DTPFFNC---VIDAYAKSGDIKIMEEMLQLMKEKKCKPDK 407
Query: 389 WTYRKLIAVY 398
TY +I Y
Sbjct: 408 VTYTTMIQAY 417
>gi|27476102|gb|AAO17033.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108705848|gb|ABF93643.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584686|gb|EAZ25350.1| hypothetical protein OsJ_09164 [Oryza sativa Japonica Group]
Length = 450
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 150/370 (40%), Gaps = 64/370 (17%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A L+ LG+ ++P A L + SE L P AL+ Y +G + +A E++
Sbjct: 93 ARLLMMLGKCQQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLLDQALATVEQMKG 152
Query: 108 SSFVLSVQ-VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + S L++ ++ F+ I +I+D++S +++ I +GK G LE
Sbjct: 153 VADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNAVIHNAIIDGYGKAGMLE 212
Query: 167 LMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGS-LTEMETAYGRLKRSRHLIDKEGIRA 224
MEN L M+ G SV D T N+ I Y G+ + EME Y + G+
Sbjct: 213 EMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLM-------GVEP 265
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR-MSEA 283
+ T+ N+++ SY GN KM ++ M +
Sbjct: 266 DTQTF----------------------------NIMIKSY-GNAKMHDKMMSVLKYMKKH 296
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY-----LDK- 337
F P + TFNI +F R + MK + V P+ +TY +V+ Y LDK
Sbjct: 297 FFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFLDKV 356
Query: 338 ----RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKRQR----K 388
R N D L D+P + V +A+ K GD E K ++ K
Sbjct: 357 PGIIRQTENTDVVL------DTPFFNC---VIDAYAKSGDIKIMEEMLQLMKEKKCKPDK 407
Query: 389 WTYRKLIAVY 398
TY +I Y
Sbjct: 408 VTYTTMIQAY 417
>gi|224104097|ref|XP_002313317.1| predicted protein [Populus trichocarpa]
gi|222849725|gb|EEE87272.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 143/337 (42%), Gaps = 49/337 (14%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA-QVVWEELLSSSFVL 112
LG+ ++P L + S+GL P AL+ Y +G + +A +V E S
Sbjct: 125 LGKCRQPEEGSFLFEVMLSDGLKPTIDVYTALVSAYGKSGQLDKAFSIVVEMKAISECKP 184
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
V S L++ ++ F I I+ ++S + Y+ I +GK E MENTL
Sbjct: 185 DVYTYSILINCCIKLHRFELIRGILAEMSYLGIECSTVTYNTIIDGYGKAKMFEEMENTL 244
Query: 173 KEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
+M+ G SV D T N+ I Y G + +ME Y
Sbjct: 245 TDMIESGSSVPDLFTFNSIIGAYGSKGRIDKMEKWY------------------------ 280
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--AGNF-KMKSLQREFMRMSEAGFHPD 288
+F ++G R+D+ +N+L+ SY AG + KM+S+ EFM + F P
Sbjct: 281 -TEFQLMGL--------RQDIKT--FNILIRSYGKAGMYGKMRSV-LEFME--KRFFSPS 326
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348
+ T NI F + + MKH + P+ VTY +V AY + G +
Sbjct: 327 IVTHNIFIETFGKAGDIETMEEYFSKMKHLGIKPNTVTYCSLVSAY--SKAGHIMKVDSI 384
Query: 349 KMNLDDSPVVSTDPY---VFEAFGK-GDFHSSSEAFL 381
+++S V+ P+ V A+G+ GD SE FL
Sbjct: 385 LRQVENSDVILDTPFFNCVISAYGRAGDIEKMSELFL 421
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 14/157 (8%)
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I +GK G M + L+ M R FS T N FI + + G + ME + ++K H
Sbjct: 299 IRSYGKAGMYGKMRSVLEFMEKRFFSPSIVTHNIFIETFGKAGDIETMEEYFSKMK---H 355
Query: 216 LIDKEGIRAVSFTYL-------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
L GI+ + TY K + LR V L +N ++ +Y
Sbjct: 356 L----GIKPNTVTYCSLVSAYSKAGHIMKVDSILRQVENSDVILDTPFFNCVISAYGRAG 411
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
++ + F+ M PD TF A++ M
Sbjct: 412 DIEKMSELFLGMEGRKCKPDSITFATMIQAYNAQGMI 448
>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 111/286 (38%), Gaps = 35/286 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ LG + A + ++ GL P AL+ Y G + +A+ V E+ S
Sbjct: 311 TVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERS 370
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ + Q S L+DAYG + ++ ++ N V+SR ++ + +G+ +
Sbjct: 371 GVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKT 430
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
L+EM G D N I + +F L + R+ EGI + T
Sbjct: 431 FQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRML-------SEGIEPDTIT 483
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
WN L+ + K + F M E G+ P
Sbjct: 484 ----------------------------WNTLVDCHCKAGKHDRAEELFEEMMEKGYLPC 515
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
TTFNI +F + D+ L +M+ + + P+ VTY ++D Y
Sbjct: 516 NTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIY 561
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 127/315 (40%), Gaps = 49/315 (15%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS-----SFVLS---- 113
A +V+ ++ G+LP+ T L+ Y N A++V +E+ +S ++V S
Sbjct: 360 AEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILA 419
Query: 114 -----------VQVLSD---------------LMDAYGRIGCFNEIISIIDQVSCRNADL 147
QVL + L+D +G+ C + ++ D++ +
Sbjct: 420 SYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEP 479
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
++ + C K G+ + E +EM+ +G+ + T N I + FG +
Sbjct: 480 DTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMI---NSFGDQERWDDVK 536
Query: 208 GRLK--RSRHLIDKEGIRAVSFT-----YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
L RS+ L+ AV++T Y K +F E L D+ + ++N L
Sbjct: 537 NLLTNMRSQGLLPN----AVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNAL 592
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L +YA F M + G P L N AF + + + L++MK +
Sbjct: 593 LNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDL 652
Query: 321 GPDLVTYGCVVDAYL 335
PD+VTY ++ A +
Sbjct: 653 KPDVVTYTTLMKALI 667
>gi|225447241|ref|XP_002272784.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Vitis vinifera]
Length = 1008
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 119/267 (44%), Gaps = 21/267 (7%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD +++ YA+ G V EA++++++L V + +M Y +G +E I +
Sbjct: 727 PDIVASNSMINLYADLGLVSEAKLIFDDLRQKGSADGVS-FATMMYLYKNLGMLDEAIDV 785
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
D++ + + LL + +++ ++C+ GQL L EM+SR D+ T
Sbjct: 786 ADEM--KQSGLLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMFTVL 843
Query: 195 SRFG----SLTEMETAYGRLKR-SRHLIDKEGIRAVSFTY--LKERKFFMLGEFLRDVGL 247
+ G ++T++E++Y K +R + V L+ + F+ E
Sbjct: 844 KKGGLPTEAVTQLESSYQEGKPYARQAVITSVFSTVGLHAFALESCETFLNAEV------ 897
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
DL + +N+ + +Y + + + FM+M + G PDL T+ A + + M
Sbjct: 898 ---DLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEG 954
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAY 334
L +K+ + P+ + ++DAY
Sbjct: 955 LKRIYSQLKYREIEPNESLFKAIIDAY 981
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 102/294 (34%), Gaps = 71/294 (24%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L+D YG+ G + + ++ + ++ I G G L E L EM RG
Sbjct: 351 LIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLTEMEERG 410
Query: 180 FSVDSATGNAFIIYYSRFGSLT-----------------------------------EME 204
S D+ T N F+ Y+ G++ E+E
Sbjct: 411 ISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLHVLCERNMVGEVE 470
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKE-----RKFFM---------------------- 237
T +KRSR +D+ I V Y+ E K F+
Sbjct: 471 TVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDKAKIFLEEHLLEDELSSRTRVAIIDAYA 530
Query: 238 ---LGEFLRDVGLGRKDLGN----LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
L +V +G++DLG + +N+++ +Y F M G P+ +
Sbjct: 531 EKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNES 590
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
T+N FS + + L M+ P +T+ V+ Y RLGR D
Sbjct: 591 TYNSLIQMFSGGDLVDEARGILAEMQKMGFKPQCLTFSAVIACY--ARLGRLPD 642
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 92/236 (38%), Gaps = 9/236 (3%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ ++ G P T A++ CYA G + +A V+EE++ + V L++
Sbjct: 608 ARGILAEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVVYGSLIN 667
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ G E + ++ V + I + K G LE + + M
Sbjct: 668 GFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMKDLEGGP 727
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D N+ I Y+ G ++E + + L R +G+ + YL + ML E +
Sbjct: 728 DIVASNSMINLYADLGLVSEAKLIFDDL---RQKGSADGVSFATMMYLY-KNLGMLDEAI 783
Query: 243 RDVGLGRKDLGNLL----WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
DV K G L +N ++ YA N ++ + M PD TF +
Sbjct: 784 -DVADEMKQSGLLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKV 838
>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 146/341 (42%), Gaps = 47/341 (13%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-SSFVL 112
LG+ ++P A L +++EGL P AL+ Y +G + +A +E+ S S
Sbjct: 138 LGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFSTVDEMKSVSDCKP 197
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
V S L++ ++ F+ I I+ ++S + ++ I+ +GK MEN+L
Sbjct: 198 DVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYGKAKMFREMENSL 257
Query: 173 KEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
M+ G SV D T N+ I Y G + +ME Y
Sbjct: 258 TNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNE---------------------- 295
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--AGNFKMKSLQREFMRMSEAGFHPDL 289
F L D+ +N+L+ SY AG ++ + EFM+ + F P +
Sbjct: 296 ----FQLMGISPDIK---------TFNILIKSYGKAGMYEKINSVIEFMK--KRFFPPTV 340
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T+NI F R ++ + MKH + P+ +TY +V AY L ++ L +
Sbjct: 341 VTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQ 400
Query: 350 MNLDDSPVVSTDPY---VFEAFGK-GDFHSSSEAFLEFKRQ 386
+++S VV + + A+G+ GD +E FLE + +
Sbjct: 401 --VENSDVVLDTTFFNCIINAYGQAGDVDKMAELFLEMRER 439
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
Query: 45 VDCAS-----LVEDLGRKKK-PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA 98
V+C++ ++ G+ K + + L N ++ +PD T +++ Y N+G + +
Sbjct: 230 VECSTVTFNTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKM 289
Query: 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158
+ + E ++ + L+ +YG+ G + +I S+I+ + R Y+ I
Sbjct: 290 EKWYNEFQLMGISPDIKTFNILIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIET 349
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
FG+ G +E M+ K M G ++ T + + YS+ G L ++ + +++ S ++D
Sbjct: 350 FGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLD 409
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++E GR + T+K G+ P+ T C+L+ Y+ G +++ + ++ +S
Sbjct: 346 IIETFGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSD 405
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLEL 167
VL + +++AYG+ G +++ + + R + +P+ ++ I + QG E
Sbjct: 406 VVLDTTFFNCIINAYGQAGDVDKMAELF--LEMRERECMPDNVTFATMIQAYRGQGMTEA 463
Query: 168 MENTLKEMVS 177
+ K M++
Sbjct: 464 AQALEKMMLA 473
>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
Length = 492
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 138/308 (44%), Gaps = 7/308 (2%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R + Y+ G L+ LG+ K+P AHQL + EG P+ + AL+ Y
Sbjct: 129 ELMRDQVWYKPHIGIY--IKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTALVSTY 186
Query: 90 ANNGFVLEAQVVWEELLSSSFVLS-VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ +G EA + + + + VQ S L+ + F ++ S++ ++ A +
Sbjct: 187 SRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKVKSLLADMA--RAGIP 244
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P Y+ I +GK G+ ME+TL +M+S+ D T N+ + + G + ME+
Sbjct: 245 PNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNSTLRAFGSSGQIETMESC 304
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
Y + + S + + + + +Y K + + +G + + + +N+++ ++
Sbjct: 305 YEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGR 364
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
++ ++ F M P+ T A+ R + +L +++ + D+V
Sbjct: 365 AGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALRIIENSDITLDIVF 424
Query: 327 YGCVVDAY 334
+ C+VDAY
Sbjct: 425 FNCLVDAY 432
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ GR + +KSE + P+ TLC+++ Y G V + + + +S
Sbjct: 358 VIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALRIIENSD 417
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIID 138
L + + L+DAYGR+GC E+ I+D
Sbjct: 418 ITLDIVFFNCLVDAYGRVGCLAEMWDILD 446
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 49/220 (22%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
S+ PD T+ + + + ++G + + +E+ +S V +++ + L+D+YG+ +
Sbjct: 275 SQNCKPDVWTMNSTLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYE 334
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF--------SVD 183
++ ++++ + Y+ I FG+ G LE ME + M S SV
Sbjct: 335 KMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVV 394
Query: 184 SATG---------------------------NAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
A G N + Y R G L EM +K R
Sbjct: 395 RAYGRAGEVKKIKTALRIIENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCK 454
Query: 217 IDKEGIRAVSFTYLKERKFFMLG-------EFLRDVGLGR 249
DK V+ T + K+F++ ++LRD+ GR
Sbjct: 455 PDK-----VTCTTMI--KWFLIKGIDDHRVQYLRDLKDGR 487
>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
Length = 844
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 110/268 (41%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L++ +++EGL D T ++ G + EA+ + EL SS + + L+ +G
Sbjct: 290 LLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFG 349
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ G ++E ++I+ ++ N L Y+ ++ + + G E + M +G ++
Sbjct: 350 KAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAV 409
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T I Y R G + + ++K+S + + ++ K+ + + + L D+
Sbjct: 410 TYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDM 469
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ + WN LL K K + F M GF P TFN A+ R
Sbjct: 470 RINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSE 529
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDA 333
D + M P TY +++A
Sbjct: 530 LDAAKMYDEMMKAGFTPCATTYNALLNA 557
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 127/304 (41%), Gaps = 35/304 (11%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
+++T+ +G++P+ T ++ Y G ++A ++ ++ S V +V + ++ G
Sbjct: 395 VIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLG 454
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ E+I I+ + ++ ++ G +G+ + + + +EM + GF
Sbjct: 455 KKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKD 514
Query: 186 TGNAFIIYYSRFGS---------------LTEMETAYGRLKRSRH-----------LID- 218
T N I Y R GS T T Y L + L+D
Sbjct: 515 TFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDM 574
Query: 219 -KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL--GNLL--WNLLLLSYAGNFK---M 270
+G + ++ + G +R + KD+ G + W LL NFK +
Sbjct: 575 RNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFKCRAV 634
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ ++R F + + G+ PD+ FN F++ +M+ L+ ++ + PDLVTY +
Sbjct: 635 RGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSL 694
Query: 331 VDAY 334
++ Y
Sbjct: 695 MNMY 698
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/360 (18%), Positives = 150/360 (41%), Gaps = 6/360 (1%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ LG+K + ++++ ++ G P+ T L+ + G V+ E+ +
Sbjct: 448 SILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNC 507
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F + L+ AYGR G + + D++ Y+ ++ ++G +
Sbjct: 508 GFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAA 567
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
E+ L +M ++GF + + + + Y++ G++ +E + + +R +
Sbjct: 568 ESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILA 627
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
K R + ++ +++N +L +A N + Q+ + E+G PD
Sbjct: 628 NFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPD 687
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348
L T+N ++R W L+ + PDLV+Y ++ + + L + +S
Sbjct: 688 LVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMS 747
Query: 349 KMNLDD-SPVVST-DPYVFEAFGKGDFHSSSE--AFLEFK--RQRKWTYRKLIAVYLKKQ 402
+M P + T + +V G+G F E +++ K + + TY+ ++ Y K +
Sbjct: 748 EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKAR 807
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/352 (18%), Positives = 135/352 (38%), Gaps = 54/352 (15%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ G K K + + +K+ G P T L+ Y G L+A +++E++ +
Sbjct: 483 TLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKA 542
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
F + L++A R G + S++ + RN P +S + C+ K G +
Sbjct: 543 GFTPCATTYNALLNALARRGDWKAAESVL--LDMRNKGFKPNETSFSLMLHCYAKGGNVR 600
Query: 167 L-----------------------------------MENTLKEMVSRGFSVDSATGNAFI 191
ME +E++ G+ D N+ +
Sbjct: 601 GLERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSML 660
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRD 244
+++ Y R ++ LI + G++ TY + + + E L+
Sbjct: 661 SIFAK-------NNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKG 713
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ + + +N ++ + M+ R M+ G P + T+N ++ M
Sbjct: 714 LIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGM 773
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN-LDFGLSKMNLDDS 355
F ++ + +M ++ P+ +TY +VD Y R ++ +DF N+DDS
Sbjct: 774 FAEVDEVISYMIQKNCKPNELTYKIIVDGYCKARKYQDAMDFIFGIKNIDDS 825
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 7/177 (3%)
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
+E K+ + + L + + + L +L +Y+ N K K F RM + G P L
Sbjct: 209 RESKYSIALKLLDKIPIDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCGLSPSLV 268
Query: 291 TFNIRAVAFSRMSMFWDLHLS-LEHMKHESVGPDLVTYGCVVDAY-LDKRLGRNLDFGLS 348
T+N+ + +M WD L L+ M++E + D T V+ A + + +F +
Sbjct: 269 TYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVE 328
Query: 349 KMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKW-----TYRKLIAVYLK 400
+ P T + + FGK +S + L+ TY +L+A Y++
Sbjct: 329 LKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVR 385
>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 123/289 (42%), Gaps = 4/289 (1%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L+ + K A Q+ +++EG P+ T AL+ + N G E V+E++ +
Sbjct: 108 TTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKT 167
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+ + L+ +G+ G +E+ + ++ + A +PE ++ IS + + G
Sbjct: 168 FQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEM--KRAGFVPERDTFNTLISSYSRCGSF 225
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ K M+ G + D ++ NA + +R G + E +K R ++ ++
Sbjct: 226 DQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSL 285
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y ++ + ++ G + +L L+L + + +R F+ + + GF
Sbjct: 286 LHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGF 345
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD+TT N + R M + L+ MK P L TY ++ Y
Sbjct: 346 SPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMY 394
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 119/306 (38%), Gaps = 47/306 (15%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K G +P+ T L+ Y+ G +A V++ +L + + + ++ A R G
Sbjct: 200 MKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGL 259
Query: 130 FNEIISIIDQVS---CRNADLLPEVYSRAISCFGKQGQLELM------------------ 168
+ + ++ ++ C+ +L Y + + ++E M
Sbjct: 260 WKQSEKVLAEMKDGRCKPNEL---TYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVL 316
Query: 169 -----------------ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
E E+ RGFS D T NA + Y R + + +K
Sbjct: 317 LKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMK 376
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV---GLGRKDLGNLLWNLLLLSYAGNF 268
R ++ + Y + F E LR++ G+ R D+ + +N ++ +Y N
Sbjct: 377 RGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGI-RPDI--ISYNTVIYAYCRNG 433
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+M+ R M E+G PD+ T+N +++ SMF + + +M P+ TY
Sbjct: 434 RMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYN 493
Query: 329 CVVDAY 334
+VD Y
Sbjct: 494 SIVDWY 499
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 66/187 (35%), Gaps = 37/187 (19%)
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+V Y+ +S F K G+ + +EM + G + T NA I + G TEM
Sbjct: 102 PDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKV 161
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
+ +K + D + WN LL +
Sbjct: 162 FEDIKTFQCSPDI-----------------------------------VTWNTLLSVFGQ 186
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
N + F M AGF P+ TFN ++SR F + M V PDL +
Sbjct: 187 NGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSS 246
Query: 327 YGCVVDA 333
Y V+ A
Sbjct: 247 YNAVLAA 253
>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
Length = 1365
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 118/281 (41%), Gaps = 4/281 (1%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RK +AH+L+ + D++ A++ Y A++V+ +L F +
Sbjct: 623 RKGFAFVAHELLIDCLHAFDVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTS 682
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
S L+ AY G F +D + + + FG+ G+ + + + +
Sbjct: 683 AYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRL 742
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
G S +S T +SR G+L E + Y ++K + + +A+ Y +E
Sbjct: 743 PEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVE 802
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYA--GNFKMKSLQREFMRMSEAGFHPDLTTFN 293
E ++D+ +L ++N ++ Y+ G+++ +L F M E G PD TTFN
Sbjct: 803 IDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALV--FKGMQEIGCSPDATTFN 860
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ +SR M + L M P++ TY ++ AY
Sbjct: 861 TLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAY 901
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/370 (19%), Positives = 146/370 (39%), Gaps = 27/370 (7%)
Query: 33 RKIIRYRKQEGFVDC------------ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
RK + E +DC +++ G+ K A + ++ G + S
Sbjct: 623 RKGFAFVAHELLIDCLHAFDVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTS 682
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
AL+ YA G A + ++++ + + +++A+GR G EI ++
Sbjct: 683 AYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRL 742
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ F + G LE + ++M GFS A + YSR
Sbjct: 743 PEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVE 802
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL---GRKDLG---- 253
+ E +K++ +D + + Y K LG + R+ L G +++G
Sbjct: 803 IDAEELVKDIKKAGLELDIDIYNHMISLYSK------LGSY-RNAALVFKGMQEIGCSPD 855
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+N L++ Y+ N ++ Q M + G P+++T+ A+ R+ + D L +
Sbjct: 856 ATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFK 915
Query: 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGD 372
+ PD Y +++ Y R ++ + +M +D P ++T + +++GKG
Sbjct: 916 SIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGG 975
Query: 373 FHSSSEAFLE 382
+E LE
Sbjct: 976 ATGKAEEVLE 985
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/293 (18%), Positives = 121/293 (41%), Gaps = 1/293 (0%)
Query: 47 CASLV-EDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
CA+ V E GR K + + G+ P++ T + ++ NG + EA+ ++ ++
Sbjct: 718 CANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQM 777
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
+ F S+QV L+ Y R + ++ + +L ++Y+ IS + K G
Sbjct: 778 KEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSY 837
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
K M G S D+ T N I+ YSR + E + + ++ + + +
Sbjct: 838 RNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTL 897
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y + + + + + +N+++ Y + + ++ +M GF
Sbjct: 898 ISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGF 957
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
P LTT ++ ++ + LE + + PD + Y +++++L+ +
Sbjct: 958 EPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLNNK 1010
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 115/276 (41%), Gaps = 41/276 (14%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
LA L+ V + GL PD T L+ + N + +A +++EE+
Sbjct: 179 LASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEM---------------- 222
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
R GC +I + Y+ IS +G+ G++E + + M +GF+
Sbjct: 223 ---QRQGCDPDIWT----------------YNAMISVYGRAGRVEAASSIFRIMQEQGFT 263
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK---ERKFFML 238
D+ T N+ + ++R G + E+E G ++ +R D+ + Y K RK L
Sbjct: 264 PDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEEL 323
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+++ G + ++ + +L+ + + F M ++ P L F+ A
Sbjct: 324 YVQMKEEG---RCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICA 380
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+++ MF D + M V PDL+ Y ++D +
Sbjct: 381 YAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVF 416
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 60/322 (18%), Positives = 131/322 (40%), Gaps = 16/322 (4%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
GF EA VV + + + V+ L+D++ A+ G ++ ++ VS + +Y
Sbjct: 485 GFYAEAAVVLKISFAQGVAVKVETLNDVLGAFEASGKLSDARDLVHAVSSIEPSVAAHLY 544
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
R K G+ E ++ + G S + Y R G E + +
Sbjct: 545 KRLAVMLAKAGRFSEAEEEMRTSQTYGQVQVSDFLKVLVASYDRAGMQDEALARFLDMTT 604
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM-K 271
+D E ++ Y ++ F+ E L D L D+ + ++ +++ G K+ +
Sbjct: 605 EGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDC-LHAFDVKDSAMHVAIIASYGKLKLWQ 663
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ + F + + GF + + ++ A++ F +L++M + P+ V+
Sbjct: 664 NAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVL 723
Query: 332 DAYLDKRLGRNLDFG-----LSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR 385
+A+ R G+ + L +M + SP T +F AF + G+ + + + K
Sbjct: 724 EAF--GRAGKAKEISEFFQRLPEMGI--SPNSRTFVVIFHAFSRNGNLEEARSMYRQMKE 779
Query: 386 Q----RKWTYRKLIAVYLKKQL 403
++ L+A+Y ++ +
Sbjct: 780 AGFSPSIQVFKALLALYSRETV 801
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 100/267 (37%), Gaps = 19/267 (7%)
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+VY+ +S + + G ++ L M RG D T N I +R G + E G
Sbjct: 126 QVYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTR-GGMQE-----GL 179
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL-----GRKDLGNLLW--NLLLL 262
+ G+R + TY L L D L R+ +W N ++
Sbjct: 180 ASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMIS 239
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
Y ++++ F M E GF PD T+N AF+R ++ M+
Sbjct: 240 VYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSS 299
Query: 323 DLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSSEAFL 381
D +TY ++ Y + R + +M + P T + + GK F + + A
Sbjct: 300 DEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMF 359
Query: 382 E--FKRQRKWT---YRKLIAVYLKKQL 403
E K Q + T + +I Y K +
Sbjct: 360 EDMLKSQVRPTLQAFSAMICAYAKADM 386
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 123/289 (42%), Gaps = 4/289 (1%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L+ + K A Q+ +++EG P+ T AL+ + N G E V+E++ +
Sbjct: 380 TTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKT 439
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+ + L+ +G+ G +E+ + ++ + A +PE ++ IS + + G
Sbjct: 440 FQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEM--KRAGFVPERDTFNTLISSYSRCGSF 497
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ K M+ G + D ++ NA + +R G + E +K R ++ ++
Sbjct: 498 DQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSL 557
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y ++ + ++ G + +L L+L + + +R F+ + + GF
Sbjct: 558 LHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGF 617
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD+TT N + R M + L+ MK P L TY ++ Y
Sbjct: 618 SPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMY 666
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 104/268 (38%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
LV+ +KS G+ PD+ T L+ C EA V +E+ + F + L+D YG
Sbjct: 258 LVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYG 317
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ E + ++ ++ Y+ IS + + G LE +MV +G D
Sbjct: 318 KSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVF 377
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T + + + G + ++ + A+ + KF + + D+
Sbjct: 378 TYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDI 437
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ + WN LL + N + F M AGF P+ TFN ++SR F
Sbjct: 438 KTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSF 497
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ M V PDL +Y V+ A
Sbjct: 498 DQAMAVYKRMLEAGVNPDLSSYNAVLAA 525
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 118/303 (38%), Gaps = 41/303 (13%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K G +P+ T L+ Y+ G +A V++ +L + + + ++ A R G
Sbjct: 472 MKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGL 531
Query: 130 FNEIISIIDQVS-----------C-------------RNADLLPEVYSRAIS-------- 157
+ + ++ ++ C R L E+YS I
Sbjct: 532 WKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKT 591
Query: 158 ---CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
K L E E+ RGFS D T NA + Y R + + +KR
Sbjct: 592 LVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGG 651
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDV---GLGRKDLGNLLWNLLLLSYAGNFKMK 271
++ + Y + F E LR++ G+ R D+ + +N ++ +Y N +M+
Sbjct: 652 FTPSLTTYNSLMYMYSRSANFERSEEILREILAKGI-RPDI--ISYNTVIYAYCRNGRMR 708
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
R M E+G PD+ T+N +++ SMF + + +M P+ TY +V
Sbjct: 709 DASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIV 768
Query: 332 DAY 334
D Y
Sbjct: 769 DWY 771
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 11/162 (6%)
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
D+ + ++ ++ N + + F +M E G P L T+N+ + +M M W+ +
Sbjct: 197 DVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMV 256
Query: 311 SL-EHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAF 368
L + MK + PD TY ++ L L +M L SP T + + +
Sbjct: 257 GLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVY 316
Query: 369 GKGDFHSSSEAFLEFKRQRK-------WTYRKLIAVYLKKQL 403
GK S EA + TY LI+ Y + L
Sbjct: 317 GKS--RRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGL 356
>gi|75265624|sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170
gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia ligase-like protein [Arabidopsis
thaliana]
Length = 447
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 152/357 (42%), Gaps = 51/357 (14%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-SSFVL 112
LG K+P A L + SEGL P +L+ Y + + +A E + S S
Sbjct: 104 LGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKP 163
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
V + L+ ++G F+ + SI+ ++S Y+ I +GK G E ME+ L
Sbjct: 164 DVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVL 223
Query: 173 KEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
+M+ G S+ D T N+ I Y ++ +ME+ Y R
Sbjct: 224 ADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSR---------------------- 261
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--AGNFKMKSLQREFMRMSEAGFHPDL 289
F ++G + D+ +N+L+LS+ AG +K +FM + F
Sbjct: 262 ---FQLMGV--------QPDITT--FNILILSFGKAGMYKKMCSVMDFME--KRFFSLTT 306
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T+NI F + + MK++ V P+ +TY +V+AY L +D L +
Sbjct: 307 VTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQ 366
Query: 350 MNLDDSPVVSTDPY---VFEAFGK-GDFHSSSEAFLEFKRQR----KWTYRKLIAVY 398
+ +S VV P+ + A+G+ GD + E +++ + ++ K T+ +I Y
Sbjct: 367 --IVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY 421
>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 140/372 (37%), Gaps = 84/372 (22%)
Query: 41 QEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100
+ G V +L++ G+ A ++ ++ D+ T L+ YA GF EA V
Sbjct: 320 EPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAV 379
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIG----------------------CFNEIISIID 138
V E + + + + ++DAYG+ G +N ++S++
Sbjct: 380 VIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLG 439
Query: 139 QVSCRNADLLPEVYSRAISCF-------------GKQGQLELMENTLKEMVSRGFSVDSA 185
+ S N + ++ CF G +G + + +EM S GF D
Sbjct: 440 KKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRD 499
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY---------------- 229
T N I Y R GS + YG + R+ G A TY
Sbjct: 500 TFNTLISAYGRCGSEVDASKMYGEMTRA-------GFNACVTTYNALLNALARKGDWRSG 552
Query: 230 ------LKERKF--------FMLGEFLRD---VGLGRKDLGN------LLWNLLLLSYAG 266
+K + F ML + + +G+ R + G W LL
Sbjct: 553 ENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLA 612
Query: 267 NFKMKSL---QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
NFK ++L +R F + G+ PD+ FN F+R +M+ L+ + + + PD
Sbjct: 613 NFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPD 672
Query: 324 LVTYGCVVDAYL 335
LVTY ++D Y+
Sbjct: 673 LVTYNSLMDMYV 684
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 136/331 (41%), Gaps = 14/331 (4%)
Query: 30 DLARKIIRYRKQEGFVD--CA--SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A K+ K+ G V C +++ LG+K + + +++ +KS G P+ +T +
Sbjct: 410 DEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTI 469
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ N G V+ E+ S F + L+ AYGR G + + +++
Sbjct: 470 LALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGF 529
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+ Y+ ++ ++G EN + +M S+GF + + + Y++ G+ +E
Sbjct: 530 NACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIER 589
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK-----DLGNLLWNLL 260
+ + +R + K R L R L +K D+ +++N +
Sbjct: 590 IEEGINEGQIFPSWMLLRTLLLANFKCRA---LAGSERAFTLFKKHGYKPDM--VIFNSM 644
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L + N + + E G +PDL T+N + R W L+ ++ +
Sbjct: 645 LSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQL 704
Query: 321 GPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
PDLV+Y V+ + K L + LS+M
Sbjct: 705 KPDLVSYNTVIKGFCRKGLMQEAVRMLSEMT 735
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 123/308 (39%), Gaps = 3/308 (0%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
++ ++S+GL D T ++ A G + EA+ + EL S + + L+ +G
Sbjct: 275 VLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFG 334
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ G + E +S++ ++ N Y+ ++ + + G + ++ M +G ++
Sbjct: 335 KAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAI 394
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T I Y + G E + +K + + + AV K+ + + + L D+
Sbjct: 395 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDM 454
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKM-KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
WN +L + GN M K + R F M GF PD TFN A+ R
Sbjct: 455 KSNGCFPNRATWNTIL-ALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGS 513
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPY 363
D M + TY +++A K R+ + +S M P ++
Sbjct: 514 EVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSL 573
Query: 364 VFEAFGKG 371
+ + + KG
Sbjct: 574 MLQCYAKG 581
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 123/315 (39%), Gaps = 35/315 (11%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G K +++ +KS G PD T L+ Y G ++A ++ E+ + F V
Sbjct: 474 GNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACV 533
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ---LELMENT 171
+ L++A R G + ++I + + YS + C+ K G +E +E
Sbjct: 534 TTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEG 593
Query: 172 LKE------------MVSRGFSVDSATGN--AFIIYYSR--------FGSLTEMET---A 206
+ E ++ F + G+ AF ++ F S+ + T
Sbjct: 594 INEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNM 653
Query: 207 YGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
Y + + I ++G+ TY ++ + + E L+ + + + +N
Sbjct: 654 YDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNT 713
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
++ + M+ R M+E G P + T+N ++ M M+ ++ +E M
Sbjct: 714 VIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKND 773
Query: 320 VGPDLVTYGCVVDAY 334
P+ +T+ VVD Y
Sbjct: 774 CRPNELTFKMVVDGY 788
>gi|225453925|ref|XP_002273719.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g01970-like [Vitis vinifera]
Length = 352
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 3/196 (1%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y++ I +GKQ +L+ ENTL M RGF D T A I YS+ G+L E + +K
Sbjct: 107 YTKIIDGYGKQNRLQDAENTLSAMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEIK 166
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFL-RDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
H +DK ++ Y++ GE L +++ G ++ LL +Y+
Sbjct: 167 LLGHPLDKRSYGSMIMAYIRA-GMPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDA 225
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ QR F + AG PD+ + A+ H++ E+M+ + P+ + +
Sbjct: 226 EGAQRVFDAIQFAGISPDVKLCALLINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALM 285
Query: 331 VDAY-LDKRLGRNLDF 345
+ AY + +L + LDF
Sbjct: 286 LAAYEKENKLNKALDF 301
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 80/200 (40%)
Query: 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
D +++ G++ + A ++ +K G + D TL A++ Y+ G + A+ +EE+
Sbjct: 106 DYTKIIDGYGKQNRLQDAENTLSAMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEI 165
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
L + ++ AY R G ++ ++ ++ + EVY + +
Sbjct: 166 KLLGHPLDKRSYGSMIMAYIRAGMPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDA 225
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E + + G S D I Y G + A+ ++RS + + I +
Sbjct: 226 EGAQRVFDAIQFAGISPDVKLCALLINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALM 285
Query: 226 SFTYLKERKFFMLGEFLRDV 245
Y KE K +FL D+
Sbjct: 286 LAAYEKENKLNKALDFLIDL 305
>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Glycine max]
Length = 576
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 130/305 (42%), Gaps = 14/305 (4%)
Query: 28 NGDLARKIIRYRKQEGFVDCAS----LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC 83
N D A +I + K++ L+ G+ K +A +L + + S P+ T
Sbjct: 240 NSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYT 299
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG---CFNEIISIIDQV 140
AL+ +A G +A+ V+E++ + V + LM+AY R G EI S++ +
Sbjct: 300 ALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHM 359
Query: 141 SCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
C P+ Y+ + +GK G + E K+M G + + + YS+ G
Sbjct: 360 GCE-----PDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMG 414
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
S+ + E ++ +S +D + ++ Y + +F + E LR + G +N
Sbjct: 415 SVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYN 474
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
+L+ Y ++ ++ F + G PD+ T+ R A+S+ ++ E M +
Sbjct: 475 ILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDD 534
Query: 319 SVGPD 323
PD
Sbjct: 535 GCYPD 539
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 4/232 (1%)
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQ 162
LL SSF V + L++A+G+ + E S Q+ A +P + Y+ I +
Sbjct: 146 LLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQL--LEARCIPTEDTYALLIKAYCIS 203
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G LE E EM + G + NA+I + G+ + E + R+K+ E
Sbjct: 204 GLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETY 263
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ Y K K FM + ++ + L+ ++A + + F +M E
Sbjct: 264 TMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQE 323
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
AG PD+ +N A+SR + M+H PD +Y +VDAY
Sbjct: 324 AGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAY 375
>gi|147771903|emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera]
Length = 1313
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 117/264 (44%), Gaps = 15/264 (5%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD +++ YA+ G V EA++++++L V + +M Y +G +E I +
Sbjct: 1032 PDIVASNSMINLYADLGLVSEAKLIFDDLRQKGSADGVS-FATMMYLYKNLGMLDEAIDV 1090
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
D++ + + L + +++ ++C+ GQL L EM+SR D+ T
Sbjct: 1091 ADEM--KQSGFLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMFTVL 1148
Query: 195 SRFG----SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
+ G ++T++E++Y K ++ + F+ + F + E
Sbjct: 1149 KKGGLPTEAVTQLESSYQEGKP----YARQAVITSVFSTVGLHAFAL--ESCETFLNAEV 1202
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
DL + +N+ + +Y + + + FM+M + G PDL T+ A + + M L
Sbjct: 1203 DLDSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGLKR 1262
Query: 311 SLEHMKHESVGPDLVTYGCVVDAY 334
+K+ + P+ + ++DAY
Sbjct: 1263 IYSQLKYREIEPNESLFKAIIDAY 1286
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 102/294 (34%), Gaps = 71/294 (24%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L+D YG+ G + + ++ + ++ I G G L E L EM RG
Sbjct: 656 LIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLTEMEERG 715
Query: 180 FSVDSATGNAFIIYYSRFGSLT-----------------------------------EME 204
S D+ T N F+ Y+ G++ E+E
Sbjct: 716 ISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLHVLCERNMVGEVE 775
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKE-----RKFFM---------------------- 237
T +KRSR +D+ I V Y+ E K F+
Sbjct: 776 TVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDKAKIFLEEHLLEDELSSRTRVAIIDAYA 835
Query: 238 ---LGEFLRDVGLGRKDLGN----LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
L +V +G++DLG + +N+++ +Y F M G P+ +
Sbjct: 836 EKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNES 895
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
T+N FS + + L M+ P +T+ V+ Y RLGR D
Sbjct: 896 TYNSLIQMFSGGDLVDEARDILAEMQKMGFKPQCLTFSAVIACY--ARLGRLPD 947
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 93/236 (39%), Gaps = 9/236 (3%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ ++ G P T A++ CYA G + +A V+EE++ + V L++
Sbjct: 913 ARDILAEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVVYGSLIN 972
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ G E + ++ V + I + K G LE + + M
Sbjct: 973 GFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMKDLEGGP 1032
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D N+ I Y+ G ++E + + L++ +G+ + YL + ML E +
Sbjct: 1033 DIVASNSMINLYADLGLVSEAKLIFDDLRQKG---SADGVSFATMMYLY-KNLGMLDEAI 1088
Query: 243 RDVGLGRKDLGNLL----WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
DV K G L +N ++ YA N ++ + M PD TF +
Sbjct: 1089 -DVADEMKQSGFLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKV 1143
>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
Length = 720
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 121/292 (41%), Gaps = 24/292 (8%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
+ P+ A ++ V++ GL P ST A++ N+G EA+ ++EE+ +
Sbjct: 292 AKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRI 351
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKE 174
+ + L+ Y R G E SII ++ Y + + G+ E + LK+
Sbjct: 352 KAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQ 411
Query: 175 MVSRGFSVDSATGNAFIIYY-------SRFGSLTEMETAYGRLKRSRH----LIDKEGIR 223
M +R ++ + + Y F L EM+ + +K RH +ID G +
Sbjct: 412 MEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNS--NVKPDRHFYNVMIDTFG-K 468
Query: 224 AVSFTYLKERKFFMLGEFLR-DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ E ML E + DV + WN L+ + + F M E
Sbjct: 469 FNCLDHAMETYDRMLSEGIEPDV---------VTWNTLIDCHRKHGYHDRAAELFEEMQE 519
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G+ P TT+NI + + ++ + L M+ + + P++VTY +VD Y
Sbjct: 520 RGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIY 571
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 112/288 (38%), Gaps = 2/288 (0%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPD--NSTLCALMLCYANNGFVLEAQVVWEELL 106
+L+ R A L++ ++ +G D N +L L N + Q ++EE+
Sbjct: 214 ALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIE 273
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
S L +L+D++ + + G N + + V + + IS G G+ E
Sbjct: 274 SDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTE 333
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
E +EM G NA + Y+R GSL E E+ +++S D+ +
Sbjct: 334 EAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLV 393
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
Y ++ L+ + +++ +L SY + + M +
Sbjct: 394 DAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVK 453
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD +N+ F + + + + M E + PD+VT+ ++D +
Sbjct: 454 PDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCH 501
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/294 (19%), Positives = 116/294 (39%), Gaps = 39/294 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ RK A +++ ++ GL PD T L+ YAN G A+ + +++ +
Sbjct: 356 ALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEAR 415
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ + + S ++ +Y G + + ++ ++ +N+++ P+ Y+ I FGK L+
Sbjct: 416 NVQPNTFIFSRILASYRDRGEWQKTFEVLREM--KNSNVKPDRHFYNVMIDTFGKFNCLD 473
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
T M+S G D T N I + + +G R+ L
Sbjct: 474 HAMETYDRMLSEGIEPDVVTWNTLIDCHRK----------HGYHDRAAEL---------- 513
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
F ++ER + +N+++ S K ++ +M G
Sbjct: 514 FEEMQERGYLPCPT---------------TYNIMINSLGEQEKWDEVKILLGKMQSQGLL 558
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
P++ T+ + F D LE MK + P Y +++A+ + L
Sbjct: 559 PNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLS 612
>gi|334185941|ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|332645523|gb|AEE79044.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 499
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 152/357 (42%), Gaps = 51/357 (14%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-SSFVL 112
LG K+P A L + SEGL P +L+ Y + + +A E + S S
Sbjct: 154 LGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKP 213
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
V + L+ ++G F+ + SI+ ++S Y+ I +GK G E ME+ L
Sbjct: 214 DVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVL 273
Query: 173 KEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
+M+ G S+ D T N+ I Y ++ +ME+ Y R
Sbjct: 274 ADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSR---------------------- 311
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--AGNFKMKSLQREFMRMSEAGFHPDL 289
F ++G + D+ +N+L+LS+ AG +K +FM + F
Sbjct: 312 ---FQLMGV--------QPDITT--FNILILSFGKAGMYKKMCSVMDFME--KRFFSLTT 356
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T+NI F + + MK++ V P+ +TY +V+AY L +D L +
Sbjct: 357 VTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQ 416
Query: 350 MNLDDSPVVSTDPY---VFEAFGK-GDFHSSSEAFLEFKRQR----KWTYRKLIAVY 398
+ +S VV P+ + A+G+ GD + E +++ + ++ K T+ +I Y
Sbjct: 417 --IVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY 471
>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
Length = 702
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 84/417 (20%), Positives = 168/417 (40%), Gaps = 78/417 (18%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS---- 118
A + ++T+ S+GLLP+ T +M YAN G V EA +++ + + +V +V +
Sbjct: 249 AAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFG 308
Query: 119 ------------DLMDAYGRIGC------FNEIISII------DQV--------SCRNAD 146
++++ R GC +N ++++ D V SC +
Sbjct: 309 MLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSC-GVE 367
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
L + Y+ IS +G+ G EM+S GF+ T NA + SR G + ++
Sbjct: 368 LSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSI 427
Query: 207 YGRLKRSR------------------------HLIDKEG-----------IRAVSFTYLK 231
++ ++ I+KE +R + K
Sbjct: 428 VSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFK 487
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
R+ + + ++V +++N +L YA N F + ++G PDL T
Sbjct: 488 CRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLIT 547
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
+N +++ + W+ L+ +K V PD+V+Y V++ + + L + LS+M
Sbjct: 548 YNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMI 607
Query: 352 LDD-SPVVSTDPYVFEAFGKGDFHSSSEAFLEFK-----RQRKWTYRKLIAVYLKKQ 402
D +P V T + + + + + + + + + TYR+++ Y K +
Sbjct: 608 ADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAK 664
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 140/322 (43%), Gaps = 21/322 (6%)
Query: 20 PSHQTHPKNG--DLARKIIRYRKQEGFVDCASL---VEDLGRKKKPHLAHQLVNTVKSEG 74
P H +G + A ++R+ EG D A+L V LGR+ + H +V + E
Sbjct: 24 PPHTALELSGHWEWALALLRWASDEGAADAAALEMVVRALGREGQ----HDVVCDLLDEM 79
Query: 75 LLPDNSTL-----CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG- 128
LP S L ++ + G A ++ EL V ++ + ++D YGR+G
Sbjct: 80 PLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGR 139
Query: 129 CFNEIISIIDQVSCRNADLLPEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSAT 186
+ I+++++++ R A + P+ + S I+ G+ G L+ +++ +RG T
Sbjct: 140 SWPRIVALLEEM--RAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVT 197
Query: 187 GNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVG 246
NA + + + G+ TE ++ S D ++ TY + FF D
Sbjct: 198 YNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARA-GFFEEAAKCLDTM 256
Query: 247 LGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ L N +N ++ +YA ++ F RM + G+ P++ T+N+ + S F
Sbjct: 257 TSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRF 316
Query: 306 WDLHLSLEHMKHESVGPDLVTY 327
+ LE M P+ VT+
Sbjct: 317 TAMLEMLEEMSRSGCTPNRVTW 338
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/268 (18%), Positives = 107/268 (39%), Gaps = 2/268 (0%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L+ +++ G+ PD+ T ++ +G + +A +E+L + V V + L+ +G
Sbjct: 147 LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFG 206
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ G + E + ++ ++ Y+ + + G E L M S+G ++
Sbjct: 207 KAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTF 266
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T N + Y+ G + E + R+K++ ++ + + K+ +F + E L ++
Sbjct: 267 TYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM 326
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ WN +L+ G M+ + R M G T+N A+ R
Sbjct: 327 SRSGCTPNRVTWN-TMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGS 385
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ M P L TY +++
Sbjct: 386 RTYAFKMYDEMISSGFTPCLTTYNALLN 413
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 111/301 (36%), Gaps = 43/301 (14%)
Query: 40 KQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K G V C +L++ G+ A +++ ++ G PD T L YA GF
Sbjct: 187 KARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFF 246
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YS 153
EA + + S + + + +M AY +G +E +++ D++ + +P V Y+
Sbjct: 247 EEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRM--KKNGYVPNVNTYN 304
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
GK+ + M L+EM G + + T N + + G ME R+
Sbjct: 305 LIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRG----MEDYVTRV--- 357
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
G+++ E RD +N L+ +Y
Sbjct: 358 -----LNGMKSCGV------------ELSRDT-----------YNTLISAYGRCGSRTYA 389
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + M +GF P LTT+N SR + + M P+ +Y ++
Sbjct: 390 FKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQC 449
Query: 334 Y 334
Y
Sbjct: 450 Y 450
>gi|296089159|emb|CBI38862.3| unnamed protein product [Vitis vinifera]
Length = 353
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 3/196 (1%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y++ I +GKQ +L+ ENTL M RGF D T A I YS+ G+L E + +K
Sbjct: 107 YTKIIDGYGKQNRLQDAENTLSAMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEIK 166
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFL-RDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
H +DK ++ Y++ GE L +++ G ++ LL +Y+
Sbjct: 167 LLGHPLDKRSYGSMIMAYIRA-GMPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDA 225
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ QR F + AG PD+ + A+ H++ E+M+ + P+ + +
Sbjct: 226 EGAQRVFDAIQFAGISPDVKLCALLINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALM 285
Query: 331 VDAY-LDKRLGRNLDF 345
+ AY + +L + LDF
Sbjct: 286 LAAYEKENKLNKALDF 301
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 80/200 (40%)
Query: 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
D +++ G++ + A ++ +K G + D TL A++ Y+ G + A+ +EE+
Sbjct: 106 DYTKIIDGYGKQNRLQDAENTLSAMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEI 165
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
L + ++ AY R G ++ ++ ++ + EVY + +
Sbjct: 166 KLLGHPLDKRSYGSMIMAYIRAGMPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDA 225
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E + + G S D I Y G + A+ ++RS + + I +
Sbjct: 226 EGAQRVFDAIQFAGISPDVKLCALLINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALM 285
Query: 226 SFTYLKERKFFMLGEFLRDV 245
Y KE K +FL D+
Sbjct: 286 LAAYEKENKLNKALDFLIDL 305
>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
Length = 793
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 84/417 (20%), Positives = 168/417 (40%), Gaps = 78/417 (18%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS---- 118
A + ++T+ S+GLLP+ T +M YAN G V EA +++ + + +V +V +
Sbjct: 340 AAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFG 399
Query: 119 ------------DLMDAYGRIGC------FNEIISII------DQV--------SCRNAD 146
++++ R GC +N ++++ D V SC +
Sbjct: 400 MLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSC-GVE 458
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
L + Y+ IS +G+ G EM+S GF+ T NA + SR G + ++
Sbjct: 459 LSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSI 518
Query: 207 YGRLKRSR------------------------HLIDKEG-----------IRAVSFTYLK 231
++ ++ I+KE +R + K
Sbjct: 519 VSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFK 578
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
R+ + + ++V +++N +L YA N F + ++G PDL T
Sbjct: 579 CRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLIT 638
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
+N +++ + W+ L+ +K V PD+V+Y V++ + + L + LS+M
Sbjct: 639 YNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMI 698
Query: 352 LDD-SPVVSTDPYVFEAFGKGDFHSSSEAFLEFK-----RQRKWTYRKLIAVYLKKQ 402
D +P V T + + + + + + + + + TYR+++ Y K +
Sbjct: 699 ADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAK 755
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 137/312 (43%), Gaps = 19/312 (6%)
Query: 32 ARKIIRYRKQEGFVDCASL---VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL-----C 83
A ++R+ EG D A+L V LGR+ + H +V + E LP S L
Sbjct: 129 ALALLRWASDEGAADAAALEMVVRALGREGQ----HDVVCDLLDEMPLPPGSRLDVRAYT 184
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-CFNEIISIIDQVSC 142
++ + G A ++ EL V ++ + ++D YGR+G + I+++++++
Sbjct: 185 TVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEM-- 242
Query: 143 RNADLLPEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R A + P+ + S I+ G+ G L+ +++ +RG T NA + + + G+
Sbjct: 243 RAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNY 302
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN-LLWNL 259
TE ++ S D ++ TY + FF D + L N +N
Sbjct: 303 TEALRVLKEMEDSGCQPDAVTYNELAGTYARA-GFFEEAAKCLDTMTSKGLLPNTFTYNT 361
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
++ +YA ++ F RM + G+ P++ T+N+ + S F + LE M
Sbjct: 362 VMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSG 421
Query: 320 VGPDLVTYGCVV 331
P+ VT+ ++
Sbjct: 422 CTPNRVTWNTML 433
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/268 (18%), Positives = 107/268 (39%), Gaps = 2/268 (0%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L+ +++ G+ PD+ T ++ +G + +A +E+L + V V + L+ +G
Sbjct: 238 LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFG 297
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ G + E + ++ ++ Y+ + + G E L M S+G ++
Sbjct: 298 KAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTF 357
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T N + Y+ G + E + R+K++ ++ + + K+ +F + E L ++
Sbjct: 358 TYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM 417
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ WN +L+ G M+ + R M G T+N A+ R
Sbjct: 418 SRSGCTPNRVTWN-TMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGS 476
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ M P L TY +++
Sbjct: 477 RTYAFKMYDEMISSGFTPCLTTYNALLN 504
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 111/301 (36%), Gaps = 43/301 (14%)
Query: 40 KQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K G V C +L++ G+ A +++ ++ G PD T L YA GF
Sbjct: 278 KARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFF 337
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YS 153
EA + + S + + + +M AY +G +E +++ D++ + +P V Y+
Sbjct: 338 EEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRM--KKNGYVPNVNTYN 395
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
GK+ + M L+EM G + + T N + + G ME R+
Sbjct: 396 LIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRG----MEDYVTRV--- 448
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
G+++ E RD +N L+ +Y
Sbjct: 449 -----LNGMKSCGV------------ELSRDT-----------YNTLISAYGRCGSRTYA 480
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + M +GF P LTT+N SR + + M P+ +Y ++
Sbjct: 481 FKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQC 540
Query: 334 Y 334
Y
Sbjct: 541 Y 541
>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
[Oryza sativa Japonica Group]
gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 793
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 84/417 (20%), Positives = 168/417 (40%), Gaps = 78/417 (18%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS---- 118
A + ++T+ S+GLLP+ T +M YAN G V EA +++ + + +V +V +
Sbjct: 340 AAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFG 399
Query: 119 ------------DLMDAYGRIGC------FNEIISII------DQV--------SCRNAD 146
++++ R GC +N ++++ D V SC +
Sbjct: 400 MLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSC-GVE 458
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
L + Y+ IS +G+ G EM+S GF+ T NA + SR G + ++
Sbjct: 459 LSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSI 518
Query: 207 YGRLKRSR------------------------HLIDKEG-----------IRAVSFTYLK 231
++ ++ I+KE +R + K
Sbjct: 519 VSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFK 578
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
R+ + + ++V +++N +L YA N F + ++G PDL T
Sbjct: 579 CRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLIT 638
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
+N +++ + W+ L+ +K V PD+V+Y V++ + + L + LS+M
Sbjct: 639 YNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMI 698
Query: 352 LDD-SPVVSTDPYVFEAFGKGDFHSSSEAFLEFK-----RQRKWTYRKLIAVYLKKQ 402
D +P V T + + + + + + + + + TYR+++ Y K +
Sbjct: 699 ADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAK 755
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 137/312 (43%), Gaps = 19/312 (6%)
Query: 32 ARKIIRYRKQEGFVDCASL---VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL-----C 83
A ++R+ EG D A+L V LGR+ + H +V + E LP S L
Sbjct: 129 ALALLRWASDEGAADAAALEMVVRALGREGQ----HDVVCDLLDEMPLPPGSRLDVRAYT 184
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-CFNEIISIIDQVSC 142
++ + G A ++ EL V ++ + ++D YGR+G + I+++++++
Sbjct: 185 TVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEM-- 242
Query: 143 RNADLLPEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R A + P+ + S I+ G+ G L+ +++ +RG T NA + + + G+
Sbjct: 243 RAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNY 302
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN-LLWNL 259
TE ++ S D ++ TY + FF D + L N +N
Sbjct: 303 TEALRVLKEMEDSGCQPDAVTYNELAGTYARA-GFFEEAAKCLDTMTSKGLLPNTFTYNT 361
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
++ +YA ++ F RM + G+ P++ T+N+ + S F + LE M
Sbjct: 362 VMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSG 421
Query: 320 VGPDLVTYGCVV 331
P+ VT+ ++
Sbjct: 422 CTPNRVTWNTML 433
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/268 (18%), Positives = 107/268 (39%), Gaps = 2/268 (0%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L+ +++ G+ PD+ T ++ +G + +A +E+L + V V + L+ +G
Sbjct: 238 LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFG 297
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ G + E + ++ ++ Y+ + + G E L M S+G ++
Sbjct: 298 KAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTF 357
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T N + Y+ G + E + R+K++ ++ + + K+ +F + E L ++
Sbjct: 358 TYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEM 417
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ WN +L+ G M+ + R M G T+N A+ R
Sbjct: 418 SRSGCTPNRVTWN-TMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGS 476
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ M P L TY +++
Sbjct: 477 RTYAFKMYDEMISSGFTPCLTTYNALLN 504
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 111/301 (36%), Gaps = 43/301 (14%)
Query: 40 KQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K G V C +L++ G+ A +++ ++ G PD T L YA GF
Sbjct: 278 KARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFF 337
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YS 153
EA + + S + + + +M AY +G +E +++ D++ + +P V Y+
Sbjct: 338 EEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRM--KKNGYVPNVNTYN 395
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
GK+ + M L+EM G + + T N + + G ME R+
Sbjct: 396 LIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRG----MEDYVTRV--- 448
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
G+++ E RD +N L+ +Y
Sbjct: 449 -----LNGMKSCGV------------ELSRDT-----------YNTLISAYGRCGSRTYA 480
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + M +GF P LTT+N SR + + M P+ +Y ++
Sbjct: 481 FKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQC 540
Query: 334 Y 334
Y
Sbjct: 541 Y 541
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/360 (20%), Positives = 148/360 (41%), Gaps = 16/360 (4%)
Query: 26 PKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
P NG +AR + Y +++ GR + H + +L+N +K E + P T +
Sbjct: 163 PSNG-VARTVYVY---------TAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTV 212
Query: 86 MLCYANNGFVLEAQV-VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
+ A G E + ++ E+ V + L+ A G +E + ++
Sbjct: 213 INACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMN--E 270
Query: 145 ADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ ++P++ YS + FGK +LE + L+EM S G D + N + Y+ GS+ E
Sbjct: 271 SGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKE 330
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+ +++ + + + + Y K ++ + + ++ + D +N+L+
Sbjct: 331 AMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQ 390
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
+ K + F M E P++ T+ A + ++ D L HM + + P
Sbjct: 391 VFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVP 450
Query: 323 DLVTYGCVVDAYLDKRLGRNLDFGLSKMN-LDDSPVVSTDPYVFEAFGKGDFHSSSEAFL 381
Y V++A+ L + MN + +P V T AF +G + +EA L
Sbjct: 451 SSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAIL 510
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 130/322 (40%), Gaps = 18/322 (5%)
Query: 29 GDLARKIIRYRKQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
GD A + R + G V + LV+ G+ + +L+ ++S G LPD ++
Sbjct: 258 GDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNV 317
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+ YA G + EA V+ ++ ++ V + S L++ YG+ G ++++ I ++ N
Sbjct: 318 LLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSN 377
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
D Y+ I FG+ G + + +MV + T I + G
Sbjct: 378 TDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGG------ 431
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL-------LW 257
Y K+ ++++GI S Y + F + + + + +
Sbjct: 432 -LYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETY 490
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
N + ++A K + RM+E+G D+ +FN AF + + + S M+
Sbjct: 491 NSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEK 550
Query: 318 ESVGPDLVTYGCVVDAYLDKRL 339
+ P+ +T V+ Y L
Sbjct: 551 ANCEPNELTLEVVLSVYCSAGL 572
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 81/216 (37%), Gaps = 42/216 (19%)
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ----LELMENTLKEMVSRGF 180
GR G ++ + D++ VY+ I+ +G+ GQ LEL+ +E VS
Sbjct: 147 GREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSI 206
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
T N I +R G + E G RH EGI+ TY
Sbjct: 207 ----LTYNTVINACARGG--LDWEGLLGLFAEMRH----EGIQPDVITY----------- 245
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
N LL + A + F M+E+G PD+ T++ F
Sbjct: 246 -----------------NTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFG 288
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
+++ + L M+ PD+ +Y +++AY +
Sbjct: 289 KLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAE 324
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 5/299 (1%)
Query: 39 RKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA 98
R+ E ++++ LGR + LA + T +EG AL+ Y +G+ EA
Sbjct: 180 RRNEQGKLASAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEA 239
Query: 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQVSCRNADLLPE--VYSRA 155
V+E + SS ++ + ++DA G+ G FN I D++ RN + P+ ++
Sbjct: 240 IKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEM-LRNG-VQPDRITFNSL 297
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
++ G+ G E N EM+ RG D T N + + G + + R
Sbjct: 298 LAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHI 357
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
+ + V Y K + ++ L + +N LL YA + +
Sbjct: 358 MPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALN 417
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M +G D T+N + + + ++ E MK E + P+L+TY ++D Y
Sbjct: 418 VCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVY 476
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 109/275 (39%), Gaps = 23/275 (8%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S+ LGR ++ A + ++S G+ D T AL+ Y G E + V+EE+ +
Sbjct: 404 SIYAKLGRFEE---ALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAE 460
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
++ S L+D Y + G + E + + + + A L +V YS I K G +E
Sbjct: 461 RIFPNLLTYSTLIDVYSKGGLYQEAMEVFREF--KKAGLKADVVLYSALIDALCKNGLVE 518
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL-----TEMETAYGRLKRSRHLIDKEG 221
+ L EM G + T N+ I + R GS ET ++ S + ++
Sbjct: 519 SAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSSLKVVEDA 578
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + + G+ + K G ++ + F +M
Sbjct: 579 TESEVGDKEDNQIIKIFGQLAAEKTCHAKKENR-----------GRQEILCILAVFHKMH 627
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
E P++ TF+ A SR + F D + LE ++
Sbjct: 628 ELDIKPNVVTFSAILNACSRCNSFEDASMLLEELR 662
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 51/253 (20%), Positives = 107/253 (42%), Gaps = 35/253 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ + + + LA Q+++ + + ++P+ T ++ YA G + EA ++ E+ +
Sbjct: 331 TLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFA 390
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
S L + L+ Y ++G F E +++ ++ Y+ + +GKQG+ E +
Sbjct: 391 SIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEV 450
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+ +EM + + T + I YS+ G E + K K G++A
Sbjct: 451 KRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFK-------KAGLKA---- 499
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
DV +L++ L+ + N ++S M++ G P+
Sbjct: 500 ---------------DV---------VLYSALIDALCKNGLVESAVSFLDEMTKEGIRPN 535
Query: 289 LTTFNIRAVAFSR 301
+ T+N AF R
Sbjct: 536 VVTYNSIIDAFGR 548
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/360 (20%), Positives = 148/360 (41%), Gaps = 16/360 (4%)
Query: 26 PKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
P NG + R + Y +++ GR + H + +L+N +K E + P T +
Sbjct: 161 PSNG-VVRTVYSY---------TAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTV 210
Query: 86 MLCYANNGFVLEAQV-VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
+ A G E + ++ E+ V + L+ A G +E + ++
Sbjct: 211 INACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMN--E 268
Query: 145 ADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ ++P++ YS + FGK +LE + L+EM G D + N + Y+ GS+ E
Sbjct: 269 SGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKE 328
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+ +++ + + + + Y K ++ + + ++ + D +N+L+
Sbjct: 329 AMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQ 388
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
+ K + F M+E P++ T+ A + ++ D L HM + V P
Sbjct: 389 VFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVP 448
Query: 323 DLVTYGCVVDAYLDKRLGRNLDFGLSKMN-LDDSPVVSTDPYVFEAFGKGDFHSSSEAFL 381
Y V++A+ L + MN + +P V T + AF +G + +EA L
Sbjct: 449 SSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAIL 508
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 132/331 (39%), Gaps = 26/331 (7%)
Query: 24 THPKNGDLARKIIRYRKQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDN 79
H GD A + R + G V + LV+ G+ + +L+ ++ G LPD
Sbjct: 251 AHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDI 310
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
++ L+ YA G + EA V+ ++ ++ V + S L++ YG+ G ++++ + +
Sbjct: 311 TSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLE 370
Query: 140 VSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199
+ N D Y+ I FG+ G + + +M + T I + G
Sbjct: 371 MKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGG- 429
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTY-----------LKERKFFMLGEFLRDVGLG 248
Y K+ ++++G+ S Y L E M + +VG
Sbjct: 430 ------LYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNT-MNEVG-- 480
Query: 249 RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
+ +N L+ ++A K + RM+E+G D+ +FN AF + + +
Sbjct: 481 -SNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEA 539
Query: 309 HLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
S M+ + P+ +T V+ Y L
Sbjct: 540 VKSYVEMEKANCEPNELTLEAVLSIYCSAGL 570
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 113/278 (40%), Gaps = 4/278 (1%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L +K G PD T AL+ Y + EA V +++ S+SF SV + L+
Sbjct: 269 ALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVS 328
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLELMENTLKEMVSRGF 180
AY R G + +++ + + + P+VY+ +S F G+ EL +EM G
Sbjct: 329 AYVRGGLLED--ALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGC 386
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ T NA I Y G EM + +K + D + + + +
Sbjct: 387 KPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSG 446
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
++ R +N L+ +Y + RM EAG PDL+T+N +
Sbjct: 447 VFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLA 506
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
R ++ L MK P+ VTY ++ AY + R
Sbjct: 507 RGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGR 544
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 108/269 (40%), Gaps = 6/269 (2%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
LV +K GL PD T L+ C EA ++EE+ + F + L+D YG
Sbjct: 237 LVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYG 296
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ E + ++ Q+ + Y+ +S + + G LE ++MV +G D
Sbjct: 297 KSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVY 356
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI---RAVSFTYLKERKFFMLGEFL 242
T + S F + + E A + R + K I A+ Y KF + +
Sbjct: 357 T---YTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVF 413
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+++ + + + WN LL + N + F M + F P+ TFN A+ R
Sbjct: 414 KEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRC 473
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
F + + M V PDL TY V+
Sbjct: 474 GSFDQAMAAYKRMLEAGVSPDLSTYNAVL 502
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 93/406 (22%), Positives = 166/406 (40%), Gaps = 68/406 (16%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A +V LG+ + A L++ ++++G D +L+ YANN +A V+ ++
Sbjct: 148 AVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKE 207
Query: 108 SSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
++ + +++ YG++G + +II+++ + C L P++ Y+ ISC
Sbjct: 208 VGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHG--LAPDLCTYNTLISCCRAGSL 265
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSR-------FGSLTEME------------- 204
E + +E+ GF D+ T NA + Y + L +ME
Sbjct: 266 YEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNS 325
Query: 205 --TAYGR-------LKRSRHLIDKEGIRAVSFTYL----------KERKFFMLGEFLRDV 245
+AY R L R ++DK GI+ +TY KE + E +R V
Sbjct: 326 LVSAYVRGGLLEDALVLKRKMVDK-GIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKV 384
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
G + ++ +N L+ Y K + + + F + PD+ T+N F + M
Sbjct: 385 GC-KPNICT--FNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMD 441
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAY-----LDKRLG---RNLDFGLSKMNLDDSPV 357
++ E MK P+ T+ ++ AY D+ + R L+ G+ SP
Sbjct: 442 SEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGV-------SPD 494
Query: 358 VSTDPYVFEAFGKGDFHSSSEAFL-EFK----RQRKWTYRKLIAVY 398
+ST V +G SE L E K + + TY L+ Y
Sbjct: 495 LSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAY 540
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 112/295 (37%), Gaps = 39/295 (13%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T L+ + NG E V+EE+ S F + L+ AYGR G F++ ++
Sbjct: 423 PDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAA 482
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
++ A + P++ Y+ ++ + G E E L EM G + T ++ + Y
Sbjct: 483 YKRM--LEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAY 540
Query: 195 -----------------------------------SRFGSLTEMETAYGRLKRSRHLIDK 219
S+ L E E A+ ++ D
Sbjct: 541 ANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDV 600
Query: 220 EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
A+ Y +++ E L + L +N L+ Y+ ++ F
Sbjct: 601 TTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFRE 660
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + G PD+ ++NI A+ R M + +E MK + PD+VTY + AY
Sbjct: 661 ILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAY 715
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 105/279 (37%), Gaps = 26/279 (9%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY--GRIGCFN 131
G+ PD ST A++ A G +++ V E+ + S L+ AY GR
Sbjct: 490 GVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGR----- 544
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFG-----------KQGQLELMENTLKEMVSRGF 180
+V NA L E+YS I K L E E RG
Sbjct: 545 -------EVERMNA-LAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGI 596
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
S D T NA + Y R + + + S + ++ + Y + F +
Sbjct: 597 SPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQ 656
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
R++ + + +N+++ +Y N M +R M PD+ T+N A++
Sbjct: 657 IFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYA 716
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
SMF + + +M + P+ TY +VD Y +L
Sbjct: 717 ADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKL 755
>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
Length = 1354
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 118/281 (41%), Gaps = 4/281 (1%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RK +AH+L+ + D++ A++ Y A++V+ +L F +
Sbjct: 612 RKGFAFVAHELLIDCLHAFEVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTS 671
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
S L+ AY G F +D + + + FG+ G+ + + + +
Sbjct: 672 AYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFYQRL 731
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
G + +S T +SR G+L E + Y +++ + + +A+ Y +E
Sbjct: 732 PEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVE 791
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYA--GNFKMKSLQREFMRMSEAGFHPDLTTFN 293
E ++D+ +L ++N ++ Y+ G+++ +L F M E G PD TTFN
Sbjct: 792 IDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALV--FKGMQEIGCSPDATTFN 849
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ +SR M + L M P++ TY ++ AY
Sbjct: 850 TLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAY 890
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/366 (18%), Positives = 144/366 (39%), Gaps = 19/366 (5%)
Query: 33 RKIIRYRKQEGFVDC------------ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
RK + E +DC +++ G+ K A + ++ G + S
Sbjct: 612 RKGFAFVAHELLIDCLHAFEVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQRHGFAGNTS 671
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
AL+ YA G A + ++++ + + +++A+GR G E+ ++
Sbjct: 672 AYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFYQRL 731
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ F + G LE + ++M GFS A + YSR
Sbjct: 732 PEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVE 791
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLK---ERKFFMLGEFLRDVGLGRKDLGNLLW 257
+ E +K++ +D + + Y K RK ++ + ++++G +
Sbjct: 792 IDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPD---ATTF 848
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
N L++ Y+ N ++ Q M + G P+++T+ A+ R+ + D L + +
Sbjct: 849 NTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAE 908
Query: 318 ESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSS 376
PD Y +++ Y R ++ + +M D P ++T + +++GKG
Sbjct: 909 TGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGK 968
Query: 377 SEAFLE 382
+E LE
Sbjct: 969 AEEVLE 974
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/293 (18%), Positives = 121/293 (41%), Gaps = 1/293 (0%)
Query: 47 CASLV-EDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
CA+ V E GR K + + G+ P++ T + ++ NG + EA+ ++ ++
Sbjct: 707 CANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQM 766
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
+ F S+QV L+ Y R + ++ + +L ++Y+ IS + K G
Sbjct: 767 REAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSY 826
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
K M G S D+ T N I+ YSR + E + + ++ + + +
Sbjct: 827 RKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTL 886
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y + + + + + +N+++ Y + + ++ +M GF
Sbjct: 887 ISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGF 946
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
P LTT ++ ++ + LE + + PD + Y +++++L+ +
Sbjct: 947 EPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLNNK 999
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 116/281 (41%), Gaps = 41/281 (14%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
LA L+ V + GL PD T L+ + N + +A +++EE+
Sbjct: 168 LASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEM---------------- 211
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
R GC +I + Y+ IS +G+ G++E + + M +GF+
Sbjct: 212 ---QRQGCDPDIWT----------------YNAMISVYGRAGRVEAASSIFRIMQEQGFT 252
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK---ERKFFML 238
D+ T N+ + ++R G + E+E G ++ +R D+ + Y K RK L
Sbjct: 253 PDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEEL 312
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+++ G + ++ + +L+ + + F M ++ P L F+ A
Sbjct: 313 YVQMKEEG---RCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICA 369
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
+++ MF D + M V PDL+ Y ++D + +
Sbjct: 370 YAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEM 410
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 100/267 (37%), Gaps = 19/267 (7%)
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+VY+ +S + + G ++ L M RG D T N I +R G + E G
Sbjct: 115 QVYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTR-GGMQE-----GL 168
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL-----GRKDLGNLLW--NLLLL 262
+ G+R + TY L L D L R+ +W N ++
Sbjct: 169 ASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMIS 228
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
Y ++++ F M E GF PD T+N AF+R ++ M+
Sbjct: 229 VYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSS 288
Query: 323 DLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSSEAFL 381
D +TY ++ Y + R + +M + P T + + GK F + + A
Sbjct: 289 DEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMF 348
Query: 382 E--FKRQRKWT---YRKLIAVYLKKQL 403
E K Q + T + +I Y K +
Sbjct: 349 EDMLKSQVRPTLQAFSAMICAYAKADM 375
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 252 LGNLL--WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+GN + +N L+ YA + S+Q+ RM + G PDL TFNI A +R M L
Sbjct: 110 IGNCVQVYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLA 169
Query: 310 LS-LEHMKHESVGPDLVTYGCVVDA-YLDKRL 339
S L+ + + PD +TY ++ A L+ RL
Sbjct: 170 SSLLQDVYAAGLRPDTITYNTLISACSLNNRL 201
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/313 (18%), Positives = 128/313 (40%), Gaps = 15/313 (4%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
GF EA VV + + + V+ L+D++ A+ G ++ ++ VS + +Y
Sbjct: 474 GFYAEAAVVLKISFAQGVAVKVETLNDVLGAFEASGKLSDARDLVHAVSSIEPSVAAHLY 533
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
R K G+ E ++ + G + S + Y R G E + +
Sbjct: 534 KRLALMLAKAGRFSEAEEEMRTSQTYGQAQVSDFLKVLVASYDRAGMQDEALARFLDMTT 593
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM-K 271
+D E ++ Y ++ F+ E L D L ++ + ++ +++ G K+ +
Sbjct: 594 EGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDC-LHAFEVKDSAMHVAIIASYGKLKLWQ 652
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ + F + GF + + ++ A++ F +L++M + P+ V+
Sbjct: 653 NAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVL 712
Query: 332 DAYLDKRLGRNLDFG-----LSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR 385
+A+ R G+ + L +M + +P T +F AF + G+ EA +++
Sbjct: 713 EAF--GRAGKAKELSEFYQRLPEMGI--TPNSRTFVVIFHAFSRNGNLE---EARSMYRQ 765
Query: 386 QRKWTYRKLIAVY 398
R+ + I V+
Sbjct: 766 MREAGFSPSIQVF 778
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 125/294 (42%), Gaps = 18/294 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ + P+ A + + V++ GL P +TL A++ ++G ++EA+ ++EE+ +
Sbjct: 262 IIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNG 321
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+ Y + G + I+ ++ YS I + G+ E
Sbjct: 322 LKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESAR 381
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYY-------SRFGSLTEMETAYGRLKRSRH--LIDKE 220
LKEM + +S + + Y F L EM+ + R R + +ID
Sbjct: 382 IVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTF 441
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
G F+ L + F + + G + + WN L+ + + + F M
Sbjct: 442 G----KFSCLDH----AMDTFDKMLSEGIQP-DTVTWNTLIDCHCKAELHERAEELFEEM 492
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
E GF P +TTFNI +F + D+ + +M+ + P++VTY ++D Y
Sbjct: 493 MEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIY 546
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 117/308 (37%), Gaps = 35/308 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-----LSSSFVLS---- 113
A +V+ ++ G+ PD T L+ Y+N G A++V +E+ + +S+V S
Sbjct: 345 AEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILA 404
Query: 114 -----------VQVLSDL---------------MDAYGRIGCFNEIISIIDQVSCRNADL 147
QVL ++ +D +G+ C + + D++
Sbjct: 405 SYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQP 464
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
++ I C K E E +EM+ +GFS T N I + +++T
Sbjct: 465 DTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLM 524
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
G ++ L + + Y K +F E L D+ + ++N L+ +YA
Sbjct: 525 GNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQK 584
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ F M P L N AF + L++MK + PD+VTY
Sbjct: 585 GLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTY 644
Query: 328 GCVVDAYL 335
++ A +
Sbjct: 645 TTLMKALI 652
>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
Length = 511
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 136/308 (44%), Gaps = 7/308 (2%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL R + YR G L+ LG+ K+P AH+L + EG P+ + AL+ Y
Sbjct: 148 DLMRDQVWYRPYVGIY--VKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTALVSAY 205
Query: 90 ANNGFVLEAQVVWEELLSSSFVLS-VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ +G A + E++ ++ VQ S L+ + F + +++ ++ A +
Sbjct: 206 SRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMA--RAGIR 263
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P V Y+ I +GK G+ ME+TL EM++ D T N+ + + G + ME+
Sbjct: 264 PNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGSGQIETMESC 323
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
Y + + S + + + +Y K + + +G + + + +N+++ ++
Sbjct: 324 YEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGR 383
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
++ ++ F M P+ T A+ R + L +++ + D+V
Sbjct: 384 AGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKIKTVLRIVENSDITLDIVF 443
Query: 327 YGCVVDAY 334
+ C+VDA+
Sbjct: 444 FNCLVDAF 451
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ GR + +KSE + P+ TLC+L+ Y G V + + V + +S
Sbjct: 377 VIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKIKTVLRIVENSD 436
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIID 138
L + + L+DA+GR+GC E+ ++D
Sbjct: 437 ITLDIVFFNCLVDAFGRVGCLAEMWDVLD 465
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 115/283 (40%), Gaps = 39/283 (13%)
Query: 48 ASLVEDLGRKKKPHLAHQLV--NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
SL++ LG+ K L+H L+ + + +PD T +L+ G V EA +E
Sbjct: 777 TSLMDVLGKGGK--LSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENS 834
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
+S +V V S L+D++G+ G + + + +++ R Y+ +S K G+L
Sbjct: 835 ISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRL 894
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ E L+EM G D T N I + G + E E+ + R+K + D +
Sbjct: 895 NVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPD-----VI 949
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
+FT L E LG+ D K+ F M E G+
Sbjct: 950 TFTSLIES-------------LGKVD-----------------KLLEACELFDSMEEEGY 979
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+P + T+N+ R + + MK + PD +T G
Sbjct: 980 NPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIG 1022
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/346 (21%), Positives = 145/346 (41%), Gaps = 55/346 (15%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V L + + A +LV+++K++ +LPD T +L+ +G + EA ++ ++
Sbjct: 709 MVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEG 768
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
V + LMD G+ G + + I ++ + +P+V YS I GK+G++E
Sbjct: 769 HEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRC--VPDVVTYSSLIDSLGKEGRVEE 826
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ +S+G + + ++ I + + G
Sbjct: 827 AYYFFENSISKGCTPNVGVYSSLIDSFGKKG----------------------------- 857
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+ +R + E R R+ N++ +N LL A ++ ++ M + G
Sbjct: 858 --MVDRALELFEEMQR-----RQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCV 910
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFG 346
PDL T+NI +M M + + MK + + PD++T+ ++++ LG+ +D
Sbjct: 911 PDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIES-----LGK-VDKL 964
Query: 347 LSKMNLDDS-------PVVSTDPYVFEAFGK-GDFHSSSEAFLEFK 384
L L DS P V T + + G+ G H ++ F E K
Sbjct: 965 LEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMK 1010
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 105/253 (41%), Gaps = 35/253 (13%)
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T LM + +NG V EA + E + + +V + L+D G+ G +E +S++ ++
Sbjct: 530 TYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREM 589
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ + YS ++ F K+ Q E + EMV +G D +T + I + +
Sbjct: 590 EKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDV 649
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
+ +GR+K +EG+ + LGN + L
Sbjct: 650 DQALDVFGRMK-------EEGMEPL--------------------------LGN--YKTL 674
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L S + K+ + F + E+ PD +NI + + + ++ MK++++
Sbjct: 675 LSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNI 734
Query: 321 GPDLVTYGCVVDA 333
PDL TY ++D
Sbjct: 735 LPDLFTYTSLLDG 747
>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 125/315 (39%), Gaps = 49/315 (15%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + +G++P+ T ++ Y G EA ++ + + V + + ++
Sbjct: 370 AAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLS 429
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G+ NE+I ++ + ++ ++ G +G + + +EM S GF
Sbjct: 430 LLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEP 489
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY------------- 229
D T N I Y R GS + YG + R+ G A TY
Sbjct: 490 DRDTFNTLISAYGRCGSEVDASKMYGEMTRA-------GFNACVTTYNALLNALARKGDW 542
Query: 230 ---------LKERKF--------FMLGEFLRDVG-LGRKDLGNLL--------WNLLLLS 263
+K + F ML + + LG + + N + W LL
Sbjct: 543 RSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTL 602
Query: 264 YAGNFKMKSL---QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
NFK ++L +R F + G+ PD+ FN F+R +M+ LE ++ + +
Sbjct: 603 LLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGL 662
Query: 321 GPDLVTYGCVVDAYL 335
PDLVTY ++D Y+
Sbjct: 663 SPDLVTYNSLMDMYV 677
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 137/331 (41%), Gaps = 14/331 (4%)
Query: 30 DLARKIIRYRKQEGFVD--CA--SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A K+ K+ G V C +++ LG+K + + +++ +KS G P+ +T +
Sbjct: 403 DEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTM 462
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ N G V+ E+ S F + L+ AYGR G + + +++
Sbjct: 463 LALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGF 522
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+ Y+ ++ ++G EN + +M S+GF + + + Y++ G+ +E
Sbjct: 523 NACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIER 582
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK-----DLGNLLWNLL 260
R+K + +R + K R L R L +K D+ +++N +
Sbjct: 583 IENRIKEGQIFPSWMLLRTLLLANFKCRA---LAGSERAFTLFKKHGYKPDM--VIFNSM 637
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L + N + + E G PDL T+N + R W L+ ++ +
Sbjct: 638 LSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQL 697
Query: 321 GPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
PDLV+Y V+ + + L + LS+M
Sbjct: 698 KPDLVSYNTVIKGFCRRGLMQEAVRMLSEMT 728
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 120/315 (38%), Gaps = 35/315 (11%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G K +++ +KS G PD T L+ Y G ++A ++ E+ + F V
Sbjct: 467 GNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACV 526
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ---LELMENT 171
+ L++A R G + ++I + + YS + C+ K G +E +EN
Sbjct: 527 TTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENR 586
Query: 172 LKE-------MVSR-------------------------GFSVDSATGNAFIIYYSRFGS 199
+KE M+ R G+ D N+ + ++R
Sbjct: 587 IKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNM 646
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
+ E ++ D ++ Y++ + + E L+ + + + +N
Sbjct: 647 YDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNT 706
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
++ + M+ R M+E G P + T+N ++ M MF ++ +E M
Sbjct: 707 VIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKND 766
Query: 320 VGPDLVTYGCVVDAY 334
P+ +T+ VVD Y
Sbjct: 767 CRPNELTFKMVVDGY 781
>gi|302823876|ref|XP_002993586.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
gi|300138598|gb|EFJ05361.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
Length = 451
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 37/231 (16%)
Query: 143 RNADLLPEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R DL P+ Y+ + + K+G ME LKEM G D T N I Y R G
Sbjct: 199 RREDLKPDAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDF 258
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
+ME Y + L++ G + + T+ N +
Sbjct: 259 VKMERTY------KSLVNLSGCKPSATTF----------------------------NSM 284
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L SY + ++ +++ +RM AG PDLTTFN ++ R + + M V
Sbjct: 285 LASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRSPV 344
Query: 321 GPDLVTYGCVVDAYLDKRLGRNLD-FGLSKMNLDDSPVVSTDPYVFEAFGK 370
P + T ++ AY + L + ++ LD P VS+ +F+A+G+
Sbjct: 345 KPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKAYGE 395
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 7/148 (4%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
++ E L PD T +M YA G + + +E+ + + L+DAYGR G
Sbjct: 198 LRREDLKPDAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGD 257
Query: 130 FNEI----ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
F ++ S+++ C+ + ++ ++ +G+ +L ME L M G D
Sbjct: 258 FVKMERTYKSLVNLSGCKPS---ATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLT 314
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRS 213
T N + Y R G L M + ++ RS
Sbjct: 315 TFNTLMSSYGRAGELDTMRKCFDKMVRS 342
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 118/269 (43%), Gaps = 24/269 (8%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADL----LPEVYSRAISCFGKQGQLELMENTLKEM 175
L+D GR+ + +++ + A L L +++ I GKQGQL L ++
Sbjct: 65 LVDEIGRLNDWALALALFKWLQKNEARLSNRDLEVAHAKIIDTMGKQGQLRLASWIFSQL 124
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTE-META---YGRLKRSRHLIDKEG-----IRAVS 226
+ S + NA I+ + R ++ +++A +G +K S H RA +
Sbjct: 125 --QLSSRTTPVLNAIIMAHLRCKNVARALDSALDHFGHMKTSVHSCPSLATYNMLTRACA 182
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDL--GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
L ++ + E LR R+DL +N ++ +YA + ++ + MSE G
Sbjct: 183 QAGLTDKAEALFLELLR-----REDLKPDAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHG 237
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES-VGPDLVTYGCVVDAYLDKRLGRNL 343
PDL TFN+ A+ R F + + + + + S P T+ ++ +Y R +
Sbjct: 238 VRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASYGQSRELGKM 297
Query: 344 DFGLSKMNLDD-SPVVSTDPYVFEAFGKG 371
+ L +M++ P ++T + ++G+
Sbjct: 298 EQVLVRMDMAGLGPDLTTFNTLMSSYGRA 326
>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 115/270 (42%), Gaps = 17/270 (6%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
EG +PD T A++ G ++A+ +++E++ S+ + L+ YG+ G F E
Sbjct: 99 EGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGVKPSIVTYNILIHGYGKAGLFRE 158
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+ ++ + N ++ I FG ++ ME + ++ +G D T N+ I
Sbjct: 159 VERVLSTMEANNVAPDTVTWNTLIRVFGLNCKIPEMEQAYEGLLRQGLQPDMVTLNSLIS 218
Query: 193 YYSRFGSLTEMETAYGRLKR--------SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
Y G +ME+ ++R + ++I + RA ++E M EF++
Sbjct: 219 AYGTAGLFEKMESVTQYMQRYNYPMTRITYNIIMEAYGRAGMVDQMEETWKRMKAEFVKP 278
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ + +L +Y + ++++ MR + D +N AF R
Sbjct: 279 --------NSSTFCSMLSAYGRHGYWHNVEK-VMRQARYFDAADTAVYNAAIDAFQRAQN 329
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F D+ E MK + PD VTY ++ AY
Sbjct: 330 FEDMEKIFEEMKLKGHAPDDVTYSILIGAY 359
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Query: 32 ARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
ARKI EG V L+ G+ ++++T+++ + PD T L+
Sbjct: 124 ARKIFDEMMIEGVKPSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIR 183
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ N + E + +E LL + L+ L+ AYG G F ++ S+ + N +
Sbjct: 184 VFGLNCKIPEMEQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPM 243
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
Y+ + +G+ G ++ ME T K M + +S+T + + Y R G
Sbjct: 244 TRITYNIIMEAYGRAGMVDQMEETWKRMKAEFVKPNSSTFCSMLSAYGRHG 294
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
+M Y G V + + W+ + + + ++ AYGR G ++ + ++ Q +
Sbjct: 251 IMEAYGRAGMVDQMEETWKRMKAEFVKPNSSTFCSMLSAYGRHGYWHNVEKVMRQARYFD 310
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
A VY+ AI F + E ME +EM +G + D T + I Y R
Sbjct: 311 AADTA-VYNAAIDAFQRAQNFEDMEKIFEEMKLKGHAPDDVTYSILIGAYERI 362
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 133/305 (43%), Gaps = 17/305 (5%)
Query: 39 RKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA 98
RK E ++++ LGR K LA + T SEG AL+ Y +G+ EA
Sbjct: 182 RKNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEA 241
Query: 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQVSCRNADLLPE--VYSRA 155
V+E + S ++ + ++DA G+ G F ++ I +++ RN + P+ Y+
Sbjct: 242 IKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEM-LRNG-VQPDRITYNSL 299
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG---RLKR 212
++ + G E N EM+ RG D T N + + G +M+ AY +
Sbjct: 300 LAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGG---QMDLAYEIMLEMPG 356
Query: 213 SRHLIDKEGIRAVSFTYLKERKF---FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
+ L + ++ Y K + L ++ +G+G L + +N LL YA +
Sbjct: 357 KKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIG---LDRVSYNTLLSIYAKLGR 413
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ + M +G D+ T+N + + F ++ + MK + V P+L+TY
Sbjct: 414 FEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYST 473
Query: 330 VVDAY 334
++D Y
Sbjct: 474 LIDVY 478
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 133/305 (43%), Gaps = 17/305 (5%)
Query: 39 RKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA 98
RK E ++++ LGR K LA + T SEG AL+ Y +G+ EA
Sbjct: 182 RKNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEA 241
Query: 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQVSCRNADLLPE--VYSRA 155
V+E + S ++ + ++DA G+ G F ++ I +++ RN + P+ Y+
Sbjct: 242 IKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEM-LRNG-VQPDRITYNSL 299
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG---RLKR 212
++ + G E N EM+ RG D T N + + G +M+ AY +
Sbjct: 300 LAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGG---QMDLAYEIMLEMPG 356
Query: 213 SRHLIDKEGIRAVSFTYLKERKF---FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
+ L + ++ Y K + L ++ +G+G L + +N LL YA +
Sbjct: 357 KKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIG---LDRVSYNTLLSIYAKLGR 413
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ + M +G D+ T+N + + F ++ + MK + V P+L+TY
Sbjct: 414 FEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYST 473
Query: 330 VVDAY 334
++D Y
Sbjct: 474 LIDVY 478
>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Brachypodium distachyon]
Length = 502
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 132/306 (43%), Gaps = 3/306 (0%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R + YR G L+ LG+ K+P AH+L + EG P+ + AL+ Y
Sbjct: 139 ELMRDQVWYRPYVGIY--IKLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALVSAY 196
Query: 90 ANNGFVLEAQVVWEELLSSSFV-LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ +G A + + + ++ VQ S L+ + F+++ ++ ++C
Sbjct: 197 SRSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPN 256
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
Y+ + +GK G+ ME+TL EM+S D T N+ + + G + ME+ Y
Sbjct: 257 TVTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMMESCYE 316
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+ + S + + + +Y K + + +G + + + +N+++ ++
Sbjct: 317 KFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAG 376
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
++ ++ F M P+ T A+ R + L +++ D+V +
Sbjct: 377 DLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRIIENSDTTLDIVFFN 436
Query: 329 CVVDAY 334
C+VDAY
Sbjct: 437 CLVDAY 442
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ GR + +KS+ + P+ TLC+L+ Y V + + V + +S
Sbjct: 368 VIDAFGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRIIENSD 427
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISII----------DQVSC 142
L + + L+DAYGR+GC E+ ++ D+V+C
Sbjct: 428 TTLDIVFFNCLVDAYGRVGCLAEMWDVLNMMKLERVSPDKVTC 470
>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
Length = 1429
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 125/296 (42%), Gaps = 15/296 (5%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGL-LPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
C S+V + P AHQ+VN +++G + ++ Y +A+ V L
Sbjct: 719 CKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNL 778
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
S ++ + LM AY + GC+ +I + + E + + G+L
Sbjct: 779 RQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRL 838
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E + ++E+ GF + ++ + ++R G++ E++ Y +K + +L IR
Sbjct: 839 EELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYL---PTIR-- 893
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGN-------LLWNLLLLSYAGNFKMKSLQREFM 278
Y + G+ +RD + ++ +WN +L Y K + +
Sbjct: 894 --LYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQ 951
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R+ E G PD TT+N + + R + +L ++ M++ + P L TY ++ A+
Sbjct: 952 RIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAF 1007
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 146/344 (42%), Gaps = 24/344 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + NT+ +G P ++ L+ +G + E VV EEL F +S + ++D
Sbjct: 806 ARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLD 865
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
A+ R G E+ I S + A LP + Y I K ++ E + EM F
Sbjct: 866 AFARAGNIFEVKKIYS--SMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANF 923
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FM 237
V+ A N+ + Y+ + Y R+K + D+ + Y ++R+ ++
Sbjct: 924 KVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYL 983
Query: 238 LGEFLRDVGLGRK-DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
L + +R++GL K D + L+ ++ ++ ++ F + G D + ++
Sbjct: 984 LMQQMRNLGLDPKLD----TYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMM 1039
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSP 356
L+ MK+ + P L T ++ +Y + + LS NL D+
Sbjct: 1040 KISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLS--NLKDTE 1097
Query: 357 V-VSTDPY--VFEAFGKG-DFHSSSEAFLEFKRQ------RKWT 390
V ++T PY V +A+ + D++S E LE K++ R WT
Sbjct: 1098 VELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWT 1141
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/278 (17%), Positives = 110/278 (39%), Gaps = 7/278 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL----SSSFVLSVQVLS 118
A +LV+ ++ G +PD + L+ +G + V ELL +S +
Sbjct: 244 AQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAV--ELLDMVRNSGLRPDAITYN 301
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+ A R + + + + + Y+ IS +G+ G E E+ +
Sbjct: 302 TLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELK 361
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF D+ T N+ + ++R + +++ Y ++++ D+ + Y K+ + +
Sbjct: 362 GFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421
Query: 239 GEFLRDV-GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
+ +D+ GL ++ + + +L+ S + M + G P L T++
Sbjct: 422 LQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALIC 481
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+++ + + M PD + Y ++D L
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLL 519
>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE
1270; Flags: Precursor
gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1440
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 125/296 (42%), Gaps = 15/296 (5%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGL-LPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
C S+V + P AHQ+VN +++G + ++ Y +A+ V L
Sbjct: 719 CKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNL 778
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
S ++ + LM AY + GC+ +I + + E + + G+L
Sbjct: 779 RQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRL 838
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E + ++E+ GF + ++ + ++R G++ E++ Y +K + +L IR
Sbjct: 839 EELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYL---PTIR-- 893
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGN-------LLWNLLLLSYAGNFKMKSLQREFM 278
Y + G+ +RD + ++ +WN +L Y K + +
Sbjct: 894 --LYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQ 951
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R+ E G PD TT+N + + R + +L ++ M++ + P L TY ++ A+
Sbjct: 952 RIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAF 1007
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 146/344 (42%), Gaps = 24/344 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + NT+ +G P ++ L+ +G + E VV EEL F +S + ++D
Sbjct: 806 ARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLD 865
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
A+ R G E+ I S + A LP + Y I K ++ E + EM F
Sbjct: 866 AFARAGNIFEVKKIYS--SMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANF 923
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FM 237
V+ A N+ + Y+ + Y R+K + D+ + Y ++R+ ++
Sbjct: 924 KVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYL 983
Query: 238 LGEFLRDVGLGRK-DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
L + +R++GL K D + L+ ++ ++ ++ F + G D + ++
Sbjct: 984 LMQQMRNLGLDPKLD----TYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMM 1039
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSP 356
L+ MK+ + P L T ++ +Y + + LS NL D+
Sbjct: 1040 KISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLS--NLKDTE 1097
Query: 357 V-VSTDPY--VFEAFGKG-DFHSSSEAFLEFKRQ------RKWT 390
V ++T PY V +A+ + D++S E LE K++ R WT
Sbjct: 1098 VELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWT 1141
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/278 (17%), Positives = 110/278 (39%), Gaps = 7/278 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL----SSSFVLSVQVLS 118
A +LV+ ++ G +PD + L+ +G + V ELL +S +
Sbjct: 244 AQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAV--ELLDMVRNSGLRPDAITYN 301
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+ A R + + + + + Y+ IS +G+ G E E+ +
Sbjct: 302 TLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELK 361
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF D+ T N+ + ++R + +++ Y ++++ D+ + Y K+ + +
Sbjct: 362 GFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421
Query: 239 GEFLRDV-GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
+ +D+ GL ++ + + +L+ S + M + G P L T++
Sbjct: 422 LQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALIC 481
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+++ + + M PD + Y ++D L
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLL 519
>gi|302822123|ref|XP_002992721.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
gi|300139462|gb|EFJ06202.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
Length = 449
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 37/231 (16%)
Query: 143 RNADLLPEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R DL P+ Y+ + + K+G ME LKEM G D T N I Y R G
Sbjct: 197 RRDDLKPDAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDF 256
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
+ME Y + L++ G + + T+ N +
Sbjct: 257 VKMERTY------KSLVNLSGCKPSATTF----------------------------NSM 282
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L SY + ++ +++ +RM AG PDLTTFN ++ R + + M V
Sbjct: 283 LASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRSPV 342
Query: 321 GPDLVTYGCVVDAYLDKRLGRNLD-FGLSKMNLDDSPVVSTDPYVFEAFGK 370
P + T ++ AY + L + ++ LD P VS+ +F+A+G+
Sbjct: 343 KPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKAYGE 393
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 7/148 (4%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
++ + L PD T +M YA G + + +E+ + + L+DAYGR G
Sbjct: 196 LRRDDLKPDAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGD 255
Query: 130 FNEI----ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
F ++ S+++ C+ + ++ ++ +G+ +L ME L M G D
Sbjct: 256 FVKMERTYKSLVNLSGCKPS---ATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLT 312
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRS 213
T N + Y R G L M + ++ RS
Sbjct: 313 TFNTLMSSYGRAGELDTMRKCFDKMVRS 340
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 24/269 (8%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADL----LPEVYSRAISCFGKQGQLELMENTLKEM 175
L+D GR+ + +++ + A L L +++ I GKQGQL L ++
Sbjct: 63 LVDEIGRLNDWALALALFKWLQKNEARLSNRDLEVAHAKIIDTMGKQGQLRLASWIFSQL 122
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTE-META---YGRLKRSRHLIDKEG-----IRAVS 226
+ S + NA I+ + R ++ +++A +G +K S H RA +
Sbjct: 123 --QLSSRTTPVFNAIIMAHLRCKNVARALDSALDHFGHMKTSVHSCPSLATYNMLTRACA 180
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDL--GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
L ++ + E LR R DL +N ++ +YA + ++ + MSE G
Sbjct: 181 QAGLTDKAEALFLELLR-----RDDLKPDAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHG 235
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES-VGPDLVTYGCVVDAYLDKRLGRNL 343
PDL TFN+ A+ R F + + + + + S P T+ ++ +Y R +
Sbjct: 236 VRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASYGQSRELGKM 295
Query: 344 DFGLSKMNLDD-SPVVSTDPYVFEAFGKG 371
+ L +M++ P ++T + ++G+
Sbjct: 296 EQVLVRMDMAGLGPDLTTFNTLMSSYGRA 324
>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
gi|223948163|gb|ACN28165.1| unknown [Zea mays]
gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
Length = 786
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 131/308 (42%), Gaps = 36/308 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + ++T+ S+GLLP+ T +M Y N G V EA +++++ + FV +V + ++
Sbjct: 334 AARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLG 393
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G+ F ++ ++ ++S ++ ++ GK+G + + L+ M S G +
Sbjct: 394 MLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVEL 453
Query: 183 DSATGNAFIIYYSRFGSLT-------EMETA------------------YGRLKRSRHLI 217
T N I Y R GS T EM +A G ++ ++
Sbjct: 454 SRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIV 513
Query: 218 DK---EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL---GNLL--WNLLLLSYAGNFK 269
K +G + +Y + + G + + ++ G + W +L NFK
Sbjct: 514 SKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANFK 573
Query: 270 MKSL---QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ L + F + G++PDL FN +++ M+ + +K + PDL+T
Sbjct: 574 CRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLIT 633
Query: 327 YGCVVDAY 334
Y ++D Y
Sbjct: 634 YNSLMDMY 641
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/357 (18%), Positives = 147/357 (41%), Gaps = 8/357 (2%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+K + + +++ + G P+ T ++ G V E + S LS
Sbjct: 395 LGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELS 454
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
+ L+ AYGR G + ++++ Y+ ++ +QG ++ +
Sbjct: 455 RDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVS 514
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI-RAVSFTYLKE 232
+M ++GF + + + + Y++ G++ + + S + I R + K
Sbjct: 515 KMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANFKC 574
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
R+ + ++V + +++N +L YA N F + +G PDL T+
Sbjct: 575 RRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITY 634
Query: 293 NIRAVAFSRMSMFWDLHLSLEHMK-HESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
N +++ S W+ L +K +++ PD+V+Y V++ + + L + LS+M
Sbjct: 635 NSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMV 694
Query: 352 LDD-SPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQR-----KWTYRKLIAVYLKKQ 402
D +P T + + + S + + + Q + TYR+++ Y + +
Sbjct: 695 ADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAK 751
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 117/301 (38%), Gaps = 43/301 (14%)
Query: 40 KQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K G C +L++ G+ A +++ ++ G PD T L YA GF
Sbjct: 272 KARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFF 331
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YS 153
EA + + S + + + +M AYG +G +E +++ DQ+ + +P V Y+
Sbjct: 332 EEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQM--KKTGFVPNVNTYN 389
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
+ GK+ + +M L EM G + + T N + + G ME R+
Sbjct: 390 LVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRG----MEDYVTRV--- 442
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
EG+R+ E RD +N L+ +Y +
Sbjct: 443 -----LEGMRSCGV------------ELSRDT-----------YNTLIAAYGRCGSRTNA 474
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + M+ AGF P +TT+N SR + + M+ + P+ +Y ++
Sbjct: 475 FKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQC 534
Query: 334 Y 334
Y
Sbjct: 535 Y 535
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/268 (18%), Positives = 105/268 (39%), Gaps = 2/268 (0%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L++ +++ G+ PD T ++ +G V EA +E+L + V + L+ +G
Sbjct: 232 LLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFG 291
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ G + E + ++ ++ Y+ + + G E L M S+G ++
Sbjct: 292 KAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAF 351
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T N + Y G + E + ++K++ + + V K+ +F ++ E L ++
Sbjct: 352 TYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEM 411
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ WN +L+ G M+ + R M G T+N A+ R
Sbjct: 412 SRSGCTPNRVTWN-TMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGS 470
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ M P + TY +++
Sbjct: 471 RTNAFKMYNEMTSAGFTPCITTYNALLN 498
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 18/277 (6%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
LV++++ +G+ D T L+ C EA V++E+ ++ F L+ L+D YG
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ ++E I ++ ++ Y+ IS + K G LE +EM +G D
Sbjct: 294 KARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVI 353
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRS---------RHLIDKEGIRAVSFTYLKERKFF 236
T + R G + Y + R+ LI G+R K +
Sbjct: 354 TYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRG------KFPEMM 407
Query: 237 MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
++ + +R G D+ + WN LL + N + F M ++G+ P+ T+
Sbjct: 408 IVFDEIRSAGF-VPDV--VTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLI 464
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
++SR +F + M + PD+ TY V+ A
Sbjct: 465 SSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSA 501
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 117/305 (38%), Gaps = 39/305 (12%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
+ ++S G +PD T L+ + NG E V++E+ S +V L+ +Y R
Sbjct: 411 DEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRC 470
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS- 184
G F++ + I ++ A + P++ Y+ +S + G+ E E EM + D
Sbjct: 471 GLFDQAMEIYKRMI--EAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDEL 528
Query: 185 -------ATGNA---------------------------FIIYYSRFGSLTEMETAYGRL 210
A NA ++ S+ +L++ E A+ L
Sbjct: 529 SYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLEL 588
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+R R +D + A+ Y K + E L + +L +N L+ Y+
Sbjct: 589 RRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDC 648
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ + + + PD ++N A+ R + MK + PD+VTY
Sbjct: 649 EKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIF 708
Query: 331 VDAYL 335
V +Y+
Sbjct: 709 VKSYV 713
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 35/258 (13%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD + +L+ YAN + + + + E++ + ++ L+ ++ ++
Sbjct: 525 PDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKA 584
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
++ R L V + IS +GK G ++ +E L M ++ +AT N+ + YSR
Sbjct: 585 FLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSR 644
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
G + E +K SR D+ ++Y
Sbjct: 645 LGDCEKCENILTEIKSSRARPDR-------YSY--------------------------- 670
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
N ++ +Y +MK R F M +G PD+ T+NI ++ SMF + + +M
Sbjct: 671 -NTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMV 729
Query: 317 HESVGPDLVTYGCVVDAY 334
P+ TY ++ Y
Sbjct: 730 THGCKPNERTYNTILQEY 747
>gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Glycine max]
Length = 515
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 131/293 (44%), Gaps = 4/293 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ LG+ K+P AH+L + EG + D + AL+ Y+ +G + +A + EE+ ++
Sbjct: 163 LIVMLGKCKQPEKAHELFQAMVDEGCVLDCESYTALLSAYSRSGLLDKAFSLLEEMKNTP 222
Query: 110 FVLS-VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
VQ S L+ + ++ F++I S++ ++ R Y+ I +GK + M
Sbjct: 223 GCQPDVQTYSILLKSCLQVFAFDKIQSLLSDMTNRGIKPNTVTYNTLIDAYGKARKFSEM 282
Query: 169 ENTLKEMVS-RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
E+ L EM++ R D T N+ + + G + ME Y + + + + + +
Sbjct: 283 ESILVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCYEKFQNAGIQPNVQTFNILLD 342
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
+Y K + + + + + + +N+++ ++ +K ++ F M P
Sbjct: 343 SYGKAQDYKKMSAVMEYMQKYHYSWTIVTFNIVIDAFGKAGDLKQMEYLFRLMRSERIKP 402
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
T A++R + L +++ V D V + C+VDAY RLG
Sbjct: 403 SCVTLCSLVRAYARAGKPEKISGVLRFVENSDVLLDTVFFNCLVDAY--ARLG 453
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 69/151 (45%), Gaps = 1/151 (0%)
Query: 49 SLVEDLGRKKK-PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L++ G+ +K + LV + PD T+ + + + N G + + +E+ +
Sbjct: 268 TLIDAYGKARKFSEMESILVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCYEKFQN 327
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ +VQ + L+D+YG+ + ++ ++++ + + ++ I FGK G L+
Sbjct: 328 AGIQPNVQTFNILLDSYGKAQDYKKMSAVMEYMQKYHYSWTIVTFNIVIDAFGKAGDLKQ 387
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
ME + M S T + + Y+R G
Sbjct: 388 MEYLFRLMRSERIKPSCVTLCSLVRAYARAG 418
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L ++SE + P TLC+L+ YA G + V + +S +L + L+DAY
Sbjct: 391 LFRLMRSERIKPSCVTLCSLVRAYARAGKPEKISGVLRFVENSDVLLDTVFFNCLVDAYA 450
Query: 126 RIGCFNE---IISIIDQVSCR 143
R+GC E ++ ++ Q C+
Sbjct: 451 RLGCLAEMKGVLEMMKQNGCK 471
>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
Length = 1025
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 121/289 (41%), Gaps = 8/289 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM-LCYANNGFVLEAQVVWEELLS 107
+++ G +++ A +LV ++S G+ + T ALM +C N L A V+ ++L+
Sbjct: 200 TMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDL-ALDVYRQMLA 258
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
++ + L+D YG+ G + E I ++D + + D Y+ I GQ +
Sbjct: 259 EGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQE 318
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR---SRHLIDKEGIRA 224
+ M++ G + T A I Y + G L + + R R++I + +
Sbjct: 319 ALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLIS 378
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
K ++ + E R++ + +N L+ + A + + Q F +M G
Sbjct: 379 ACE---KAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRG 435
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
PD TF A+ R + + E MK + PD V Y +V A
Sbjct: 436 CKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGA 484
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 4/166 (2%)
Query: 30 DLARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
DLA + R EG V +L++ G+ A ++++ ++ +G+ P+ T +
Sbjct: 247 DLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTV 306
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
++ +G EA ++E +L++ + + L+ AYG+ G + + I + R
Sbjct: 307 IIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGC 366
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ YS IS K G+ EL +EM + G + T N+ I
Sbjct: 367 ERNVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLI 412
>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 680
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 117/287 (40%), Gaps = 4/287 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ + P A + + +S GL P STL A++L N+G EA+ ++EE+ +
Sbjct: 247 IIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENG 306
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+ Y R G + ++ ++ + YS I + G+ E
Sbjct: 307 LEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESAR 366
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
LKEM + +S + + Y G + +K S D+ + T+
Sbjct: 367 IVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTF 426
Query: 230 LKERKF-FMLGEFLRDVGLG-RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
K + F R + G D+ + WN L+ + + + + F M + G+ P
Sbjct: 427 GKYNCLDHAMATFERMLSEGIPPDI--VTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSP 484
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+TT+NI + + + L M+ + + P+ +TY +VD Y
Sbjct: 485 CITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVY 531
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 126/317 (39%), Gaps = 59/317 (18%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS-----SFVLS------- 113
+V+ ++ G+ PD T L+ YA+ G A++V +E+ +S S+V S
Sbjct: 333 VVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYR 392
Query: 114 --------VQVLSDL---------------MDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
QVL D+ +D +G+ C + ++ +++ + P+
Sbjct: 393 DKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEG--IPPD 450
Query: 151 V--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
+ ++ I C K G+ ++ E EM RG+S T N I + G E
Sbjct: 451 IVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMI---NSMGEQQRWEQVTA 507
Query: 209 RLKRSRHLIDKEGIRAVSFTYL-------KERKF---FMLGEFLRDVGLGRKDLGNLLWN 258
L + + +G++ S TY K +F E L+ G + ++N
Sbjct: 508 FLSK----MQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPT---STMYN 560
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
L+ +YA + F M+ G P L N AF + L++MK
Sbjct: 561 ALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKEN 620
Query: 319 SVGPDLVTYGCVVDAYL 335
++ PD+VTY ++ A +
Sbjct: 621 NIEPDVVTYTTLMKALI 637
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 142/349 (40%), Gaps = 50/349 (14%)
Query: 28 NGDLARKIIRYRKQEG-----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
+GD A + R KQEG V +LV L + + A + + GL D +
Sbjct: 26 DGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVC 85
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
L+ C G + +A+ + + + +FVL V S LMDA G+ G + + + +
Sbjct: 86 NTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNM-- 143
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ A +P+ VY+ ISC GKQG+++ L++M +G D T N I S G
Sbjct: 144 QKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRY 203
Query: 201 TEMETAYGRLKRSRHLIDK-------EGIRAVS--------FTYLKERK-------FFML 238
+ + +G +KR +H D G++ + F ++ K F L
Sbjct: 204 EKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTL 263
Query: 239 GEFLRDVGLGRKDL-------------GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
+ L G L + ++N L+ + + ++ F M E
Sbjct: 264 IDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSC 323
Query: 286 HPDLTTFNIRAVAFSR---MSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
PD T+ I + FSR SM +L L+ M E P L TY ++
Sbjct: 324 FPDSITYTILVLGFSRRGHTSMAMEL---LQEMVREGHTPALATYNVLI 369
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/300 (17%), Positives = 112/300 (37%), Gaps = 4/300 (1%)
Query: 32 ARKIIRYRKQEGFV----DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
AR+++ + FV + L++ LG+ + A ++ + ++ G +PD L+
Sbjct: 101 ARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLIS 160
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
C G V EA + E++ + + + ++D G + + S + R
Sbjct: 161 CLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSP 220
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ ++ K + + + EM + D T I ++ G + +
Sbjct: 221 DVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQS 280
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
RL + H+ + A+ + + + E +D+ ++ + +L+L ++
Sbjct: 281 ARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRR 340
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
M G P L T+N+ + S D + + M + PD+ TY
Sbjct: 341 GHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTY 400
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 118/290 (40%), Gaps = 5/290 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G++PD ST A++ A G +++ V E+ + S L+ AY +
Sbjct: 504 GVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERM 563
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ +++ + + + + K L E E+ RG S D T NA +
Sbjct: 564 NAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSI 623
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
Y R + + + +R ++ + Y + F E LR+V
Sbjct: 624 YGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPD 683
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ +N ++ +Y N +MK R F M ++ PD+ T+N ++ SMF + +
Sbjct: 684 RISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVR 743
Query: 314 HMKHESVGPDLVTYGCVVDAY--LDKRLGRNLDFGLSKMNLDDSPVVSTD 361
+M + PD TY +VD Y LD+R N F + NLD P VS +
Sbjct: 744 YMIKQGCKPDQNTYNSIVDWYCKLDQRHEAN-SFVKNLSNLD--PHVSKE 790
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/369 (20%), Positives = 134/369 (36%), Gaps = 74/369 (20%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K EGF V +L++ G+ ++P A +++ +++ G P + T +L+ YA G +
Sbjct: 291 KLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLL 350
Query: 96 LEA-----QVVWEELLSSSFV---------------LSVQVL---------------SDL 120
EA Q+V + + F ++QV + L
Sbjct: 351 EEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNAL 410
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ +G G F E++ + D + N ++ ++ FG+ G + KEM GF
Sbjct: 411 IKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGF 470
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ T N I YSR GS + Y + + + D AV + + +
Sbjct: 471 VAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEK 530
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL--------------------------- 273
L ++ GR L ++ LL +YA +++ +
Sbjct: 531 VLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNS 590
Query: 274 --------QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+R F+ + G PD+TT N + R M H L M P L
Sbjct: 591 KSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLT 650
Query: 326 TYGCVVDAY 334
TY ++ Y
Sbjct: 651 TYNSLMYMY 659
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 105/271 (38%), Gaps = 6/271 (2%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
LV ++S G+ PD T L+ C EA +++++ F + L+D +G
Sbjct: 251 LVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFG 310
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ E + ++ ++ Y+ IS + K G LE + +MV +G D
Sbjct: 311 KSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVF 370
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI---RAVSFTYLKERKFFMLGEFL 242
T + + + G + + A R + K I A+ + KF + +
Sbjct: 371 TYTTLLSGFEKAG---KDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVF 427
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
D+ L + WN LL + N + F M AGF + TFN A+SR
Sbjct: 428 DDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRC 487
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
F + M V PDL TY V+ A
Sbjct: 488 GSFDQAMAVYKSMLEAGVVPDLSTYNAVLAA 518
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 7/154 (4%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW-DLHLSLEHM 315
+ L+ +Y+ + + + F +M + G +P L T+N+ + +M M W ++ +E M
Sbjct: 196 YTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTALVEAM 255
Query: 316 KHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFH 374
+ V PDL TY ++ L +M L+ +P T + + FGK
Sbjct: 256 RSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRP 315
Query: 375 SSSEAFLEFKRQRKW-----TYRKLIAVYLKKQL 403
+ L+ + TY LI+ Y K L
Sbjct: 316 QEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGL 349
>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Brachypodium distachyon]
Length = 821
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 10/269 (3%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K GL PD + L+ Y +G +A+ ++E+ +S ++ + L+DAYG G
Sbjct: 393 LKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGM 452
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
F E IS++ ++ + P+V S + ++ G+ Q+ ++ L+ SRG ++
Sbjct: 453 FKEAISLLHEM--EKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCY 510
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL 247
N+ I Y FG + Y + S D + K K+ +F D+
Sbjct: 511 NSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVD 570
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF-- 305
R L +++ L+ SY K+ + F M E+G PD+ T+ A++ +
Sbjct: 571 LRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRN 630
Query: 306 -WDLHLSLEHMKHESVGPDLVTYGCVVDA 333
WDL + M+ +V PD + +++A
Sbjct: 631 AWDL---FKEMEGNTVQPDAIICSSLMEA 656
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 8/224 (3%)
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLK 173
+ + L+ A+ R G + I+I+D + A + P Y+ I+ G G + K
Sbjct: 192 IYNSLIHAHARAGQWRWAINIMDDM--LRAAIPPSRTTYNNVINACGAAGNWKKALELCK 249
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI-DKEGIRAVSFTYLKE 232
+M G D T N + + + GS AY + + ++ D + V +K+
Sbjct: 250 KMTRNGVGPDLVTHNIVLSAF-KNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKD 308
Query: 233 RKFFMLGEFLRDVGLGRKDLGN--LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
++ E L + R + + ++ SY K++ + F M G P++
Sbjct: 309 GQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIV 368
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++N A++ M D + +K + PD+V+Y +++AY
Sbjct: 369 SYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAY 412
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 124/304 (40%), Gaps = 35/304 (11%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L++T+ G+ P+ T ++ Y V +A +++++ S +V + ++ G
Sbjct: 372 LIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLG 431
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ E++ I+ + ++ +S G +G + ++ +EM S GF D
Sbjct: 432 KKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRD 491
Query: 186 TGNAFIIYYSRFGSLTEMETAY-------------------------GRLKRSRHLID-- 218
T N I R GS + E Y G + + +I
Sbjct: 492 TFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDM 551
Query: 219 -KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL--GNLL--WNLLLLSYAGNFKMKSL 273
+G + +Y + G +++ + KD+ G++ W LL NFK ++L
Sbjct: 552 KNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRAL 611
Query: 274 ---QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+R F + + G+ PDL FN FSR +M H + ++ + PDLVTY +
Sbjct: 612 AGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSL 671
Query: 331 VDAY 334
+D Y
Sbjct: 672 MDLY 675
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 129/329 (39%), Gaps = 38/329 (11%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C++++ GR+ A + +KS+G P T AL+ + G EA + +E+
Sbjct: 283 CSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEME 342
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
++ ++L+ AY R G + E ++ID ++ Y+ I+ +G+ Q++
Sbjct: 343 DNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVD 402
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ +M G + + T NA + G L G+ +S ++
Sbjct: 403 KALSLYDQMKESGCAPNVCTYNAIL------GML-------GKKSQSEEMM--------- 440
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM-KSLQREFMRMSEAGF 285
+ L D+ + + WN +LS GN M K ++R F M GF
Sbjct: 441 -------------KILCDMKVDGCAPNRITWN-TMLSMCGNKGMHKYVKRVFQEMKSCGF 486
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345
PD TFN A R D + M P + TY +++A + R +
Sbjct: 487 EPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAES 546
Query: 346 GLSKM-NLDDSPVVSTDPYVFEAFGKGDF 373
+ M N P ++ + ++ KG +
Sbjct: 547 VIKDMKNKGFKPSETSYSLILNSYAKGGY 575
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/344 (20%), Positives = 125/344 (36%), Gaps = 50/344 (14%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G K ++ +KS G PD T L+ G ++A+ +++E+L + F SV
Sbjct: 466 GNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSV 525
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG----------- 163
+ L++A R G + S+I + + YS ++ + K G
Sbjct: 526 ATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKD 585
Query: 164 ------------------------QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199
L ME + + G+ D N+ + +SR
Sbjct: 586 IYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSR--- 642
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG-------EFLRDVGLGRKDL 252
+ + R HLI + G++ TY + G E LR++
Sbjct: 643 ----KNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKS 698
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+ +N ++ + M R M G P + T+N ++ MF ++ L
Sbjct: 699 DLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVL 758
Query: 313 EHMKHESVGPDLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDS 355
+M P+ +TY VVD Y K+ +DF + ++DDS
Sbjct: 759 SYMTKHDCRPNELTYKIVVDGYCKAKKFKEAMDFVSTITDIDDS 802
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 35/197 (17%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ RK AH++++ ++ GL PD T +LM YA G +A+ + EL
Sbjct: 635 SMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILREL--- 691
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
Q S +DL+ Y+ I F +QG +
Sbjct: 692 ------------------------------QNSGDKSDLIS--YNTVIKGFCRQGLMHEA 719
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
TL EM+SRG T N F+ Y+ G E++ + + ++ + V
Sbjct: 720 LRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDG 779
Query: 229 YLKERKFFMLGEFLRDV 245
Y K +KF +F+ +
Sbjct: 780 YCKAKKFKEAMDFVSTI 796
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 38/227 (16%)
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ-LELM 168
+ L V+ + ++ +Y R G + ++I ++++ Y+ + +GK G+ +
Sbjct: 205 YSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKI 264
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
L EM S+G D T + I +A GR EG+
Sbjct: 265 LGLLDEMRSKGLGFDEFTCSTVI-------------SACGR----------EGL------ 295
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR-MSEAGFHP 287
L E K F +G L+ G G + +N LL + G + S M+ M + P
Sbjct: 296 -LDEAKEFFVG--LKSQGYAP---GTVTYNALLQVF-GKAGIYSEALSIMKEMEDNNCPP 348
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D T+N A+ R + + ++ M + P+ VTY +++AY
Sbjct: 349 DAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAY 395
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 7/151 (4%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS-LEHM 315
+ +L SY+ K + F +M+E+G P L T+N+ + +M W+ L L+ M
Sbjct: 212 YTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEM 271
Query: 316 KHESVGPDLVTYGCVVDAY-LDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFH 374
+ + +G D T V+ A + L +F + + +P T + + FGK +
Sbjct: 272 RSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIY 331
Query: 375 SSSEAFLEFKRQRKW-----TYRKLIAVYLK 400
S + + ++ TY +L+A Y++
Sbjct: 332 SEALSIMKEMEDNNCPPDAVTYNELVAAYVR 362
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 138/305 (45%), Gaps = 35/305 (11%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ G+ Q++ ++ G+ P+ + +L+ C +G +LEA++V +++
Sbjct: 461 TLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICR 520
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ + QV + L+D +G + + D++ +++ P + Y+ I K+G+L
Sbjct: 521 GVLPNAQVYNMLIDGSCMVGKVKDALRFFDEM--MRSEISPTLVTYNVLIDGLCKKGKLT 578
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK--------RSRHLI- 217
E+ L ++ S G S D T N+ I Y+ G++++ Y +K R+ H +
Sbjct: 579 EAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLI 638
Query: 218 ---DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA--GNF-KMK 271
KEGI V Y + + +L + +++N ++ YA GN K
Sbjct: 639 SGCSKEGIELVEKLYNEMLQMNLLPD-------------RVVYNAMIHCYAEIGNTQKAY 685
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
SL + M + G HPD T+N + R ++ + +MK + + P TY +V
Sbjct: 686 SLHQ---GMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILV 742
Query: 332 DAYLD 336
+ D
Sbjct: 743 KGHCD 747
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 35/237 (14%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
EA+ + +E+ + F+ S L D R N + + +Q + + + S +
Sbjct: 299 EARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILL 358
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
+ KQG++E E LK+ G D N F+ Y R G +M A ++R
Sbjct: 359 NGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIG---DMNKAILTIER---- 411
Query: 217 IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276
++ G+R S T+ N L+ + +M +
Sbjct: 412 MESFGLRPNSITF----------------------------NSLIDKFCDMKEMDKAEEW 443
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+M+E G P + T+N + ++ F LE M+ V P++V+YG +++
Sbjct: 444 VKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINC 500
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 54/282 (19%), Positives = 112/282 (39%), Gaps = 18/282 (6%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
+ + +++++ G+ P+ L+ + +A+ +++E+ + + V S+ + L+
Sbjct: 194 MGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLI 253
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRG 179
D Y ++G + + +++ + + P + ++ +S K +++ + LKEM G
Sbjct: 254 DGYCKVGELDAAFKMRERM--KEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNG 311
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT-------YLKE 232
F D T Y F L + G ++ +K GIR ++T K+
Sbjct: 312 FMPDGYT------YSILFDGLLRCDDGNGAMELYEQATEK-GIRINNYTGSILLNGLCKQ 364
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
K E L+ +++N + Y M RM G P+ TF
Sbjct: 365 GKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITF 424
Query: 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
N F M ++ M + V P + TY ++D Y
Sbjct: 425 NSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGY 466
>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g42310, mitochondrial; Flags: Precursor
gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 709
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 75/377 (19%), Positives = 141/377 (37%), Gaps = 40/377 (10%)
Query: 50 LVEDL----GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
LV D+ + P A QL+ ++ GL +TL +++ A++G LEA+ ++EEL
Sbjct: 271 LVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEEL 330
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN--------------------- 144
S + + L+ Y + G + S++ ++ R
Sbjct: 331 RQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRW 390
Query: 145 ------------ADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
D+ P V+SR ++ F +G+ + LKEM S G D N
Sbjct: 391 ESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVV 450
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
I + +F L T + R+ D+ + + K + + E +
Sbjct: 451 IDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGC 510
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+N+++ SY + ++R +M G P++ T + + F D
Sbjct: 511 LPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIE 570
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFG 369
LE MK + P Y +++AY + L M D P + + AFG
Sbjct: 571 CLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFG 630
Query: 370 KGDFHSSSEAFLEFKRQ 386
+ + + A L++ ++
Sbjct: 631 EDRRDAEAFAVLQYMKE 647
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 37/309 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-----SSFVLS---- 113
A +V+ ++ G+ PD T L+ Y N G A++V +E+ + +SFV S
Sbjct: 358 AESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLA 417
Query: 114 -----------VQVLSDL---------------MDAYGRIGCFNEIISIIDQVSCRNADL 147
QVL ++ +D +G+ C + ++ D++ +
Sbjct: 418 GFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEP 477
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
++ I C K G+ + E + M RG + T N I Y +M+
Sbjct: 478 DRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLL 537
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV-GLGRKDLGNLLWNLLLLSYAG 266
G++K L + + Y K +F E L ++ +G K + ++N L+ +YA
Sbjct: 538 GKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKP-SSTMYNALINAYAQ 596
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ F M+ G P L N AF + L++MK V PD+VT
Sbjct: 597 RGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVT 656
Query: 327 YGCVVDAYL 335
Y ++ A +
Sbjct: 657 YTTLMKALI 665
>gi|302816774|ref|XP_002990065.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
gi|300142185|gb|EFJ08888.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
Length = 458
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 114/289 (39%), Gaps = 4/289 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+E LG+ K+P A L T+ ++G P ALM Y + + A V + + ++
Sbjct: 63 LLEMLGKCKRPDEAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATP 122
Query: 110 FV-LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V S L+ + G + ++ ++ R Y+ + + K G L+ +
Sbjct: 123 HCSPDVFTYSLLIKSCCDCGQLSRASDLLADMTARGIQPNRVTYNIILDAYAKSGSLDKL 182
Query: 169 ENTLKEMV---SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ +M+ S D + NA + + G + ME + RL D + ++
Sbjct: 183 HDLALQMLQSPSPSCRPDHWSRNAIVKGFGNRGDIRRMEEWFQRLTTPSDGPDSLTLHSL 242
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y K F + +R + + + +N+L+ +Y + + + F M G
Sbjct: 243 MAAYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGGV 302
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD T+ + + M L LE M V PD Y V+DAY
Sbjct: 303 RPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAY 351
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 20/183 (10%)
Query: 69 TVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG 128
T S+G PD+ TL +LM YA + V + + + + L++AYGR G
Sbjct: 228 TTPSDG--PDSLTLHSLMAAYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAG 285
Query: 129 CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN 188
+++ + C Y I+ +GK G + L++M D+A N
Sbjct: 286 RKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYN 345
Query: 189 AFIIYYSRFGSLTEMETAYGRLK------------------RSRHLIDKEGIRAVSFTYL 230
+ + Y R ++ ++ + ++ RS+ L DK + AV L
Sbjct: 346 SVLDAYRRASDISSIDRYFAAMQEQGCKPDHLTYNILIQAYRSQGLTDKADVMAVEQEKL 405
Query: 231 KER 233
K+R
Sbjct: 406 KQR 408
>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
Length = 388
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 154/382 (40%), Gaps = 55/382 (14%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R+ + YR G L+ LG+ K+P AHQL + EG + + AL+ Y
Sbjct: 18 ELLREQLWYRPYAGMY--VKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAY 75
Query: 90 ANNGFVLEAQVVWEELLSSSFV-LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+G +A + EE+ ++ V S L+ + ++ F+++ ++ +
Sbjct: 76 GRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPN 135
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVS-RGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I +GK ME TL EM+S + D T N+ I + G + ME Y
Sbjct: 136 TVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCY 195
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--A 265
+ + + GI T+ N+LL SY A
Sbjct: 196 EKFQSA-------GIEPNIKTF----------------------------NILLDSYGKA 220
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
GN++ S E+M+ + + T+N+ AF R + M+ E + P V
Sbjct: 221 GNYQKMSAVMEYMQRYHYSW--TIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 278
Query: 326 TYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVF----EAFGKGDFHSSSEAFL 381
T +V AY + G+ G S + ++ V+ D F +A+G+ + + + L
Sbjct: 279 TLCSLVRAY--REAGKPEKIG-SVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVL 335
Query: 382 EFKRQR-----KWTYRKLIAVY 398
E ++ K TYR +I Y
Sbjct: 336 ELMEEKGCKPDKVTYRTMIKAY 357
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Query: 37 RYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVL 96
RY V +++ GR L ++SE + P TLC+L+ Y G
Sbjct: 235 RYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPE 294
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF---NEIISIIDQVSCRNADLLPEVYS 153
+ V + +S L + L+DAYGR+ CF E++ ++++ C+ +
Sbjct: 295 KIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMI 354
Query: 154 RAISCFGKQGQLELMENTL 172
+A S G + + N L
Sbjct: 355 KAYSIKGMTSHAKKLRNLL 373
>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
Length = 738
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 129/295 (43%), Gaps = 13/295 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ G+ K+P + ++ N +KS G P+ T AL+ +A G +A+ V+EE+ +
Sbjct: 429 MINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAG 488
Query: 110 FVLSVQVLSDLMDAYGRIGC---FNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
V + LM+AY R G +EI S++ + C P+ Y+ + +G+ G
Sbjct: 489 HEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCE-----PDRASYNILVDAYGRAGL 543
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
E E +E+ RG S + + ++R G+ T E +L +S D + A
Sbjct: 544 HEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNA 603
Query: 225 VSFTYLKERKFFMLGEFLRDVGL-GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
+ Y + + + L + G D+G +N+ + +Y + ++ F ++
Sbjct: 604 MLNAYARAGRLDDMERLLAAMERRGDADVGT--YNVAVNAYGRAGYVGRMEAAFAAVAAR 661
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
G D+ T+ R A++R + +E M PD T ++ A D+R
Sbjct: 662 GLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDER 716
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/285 (17%), Positives = 103/285 (36%), Gaps = 35/285 (12%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+E G+K++ + A + + +P T L+ Y N G + A+ V E+
Sbjct: 324 LIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHG 383
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ V + +D + C + + + ++ E ++ I+ +GK Q
Sbjct: 384 IPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSM 443
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM S G + T A + ++R G + E + ++++ H D + Y
Sbjct: 444 KVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD-------VYAY 496
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
N L+ +Y+ + F M G PD
Sbjct: 497 ----------------------------NALMEAYSRAGLPQGASEIFSLMQHMGCEPDR 528
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++NI A+ R + D E +K + P + ++ ++ A+
Sbjct: 529 ASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAH 573
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 108/286 (37%), Gaps = 40/286 (13%)
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQ 162
L SSF + + L+++YG+ N+ SI ++ A +P + Y+ + +
Sbjct: 309 LYRSSFRPDIICYNLLIESYGKKRQLNKAESIY--MALLEAQCVPTEDTYALLLRAYCNA 366
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G L E + EM G ++ NA++ + + Y R+KR R + E
Sbjct: 367 GSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTE-- 424
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+FT L++ Y + S + F M
Sbjct: 425 ---TFT------------------------------LMINVYGKAKQPMSSMKVFNEMKS 451
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
G P++ T+ AF+R + E M+ PD+ Y +++AY L +
Sbjct: 452 IGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQG 511
Query: 343 LDFGLSKM-NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQR 387
S M ++ P ++ + +A+G+ H +EA E +QR
Sbjct: 512 ASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQR 557
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P A ++ + ++ G PD ++ L+ Y G +A+ V+EEL
Sbjct: 498 ALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQR 557
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLE 166
+++ L+ A+ R G ++ Q+ + L P+ ++ ++ + + G+L+
Sbjct: 558 GMSPTMKSHMLLLAAHARSGNATRCEEVMAQL--HKSGLTPDTFALNAMLNAYARAGRLD 615
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
ME L M RG D T N + Y R G + ME
Sbjct: 616 DMERLLAAMERRG-DADVGTYNVAVNAYGRAGYVGRME 652
>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 831
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 121/302 (40%), Gaps = 37/302 (12%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
+I + + +LV L R+K H L++ V+ GL PD A++ + +G
Sbjct: 345 LIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGN 404
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VY 152
+ +A ++E++ S + + L+ YG+IG E +++ + R+ L P
Sbjct: 405 LDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMM-LRDEMLQPNDRTC 463
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + + Q ++E N + +M S G D+ T N YSR GS E + R
Sbjct: 464 NILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMI--IPR 521
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
H K +R ++ Y KM+
Sbjct: 522 MLHNKVKPNVRTCG--------------------------------TIVNGYCEEGKMEE 549
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
R F RM E G HP+L FN F ++ + ++ M+ V PD+VT+ +++
Sbjct: 550 ALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 609
Query: 333 AY 334
A+
Sbjct: 610 AW 611
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 118/305 (38%), Gaps = 39/305 (12%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
+ ++S G +PD T L+ + NG E V++E+ S +V L+ +Y R
Sbjct: 413 DDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRC 472
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS- 184
G F++ + I ++ A + P++ Y+ +S + G+ E E EM + D
Sbjct: 473 GLFDQSMEIYKRMI--EAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDEL 530
Query: 185 -------ATGNA---------------------------FIIYYSRFGSLTEMETAYGRL 210
A NA ++ S+ +L+E E A+ L
Sbjct: 531 SYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLEL 590
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
R R +D + A+ Y K R + E L + +L +N L+ Y+
Sbjct: 591 GRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDC 650
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ + + +G PD ++N A+ R + MK + PD+VTY
Sbjct: 651 EKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIF 710
Query: 331 VDAYL 335
V +Y+
Sbjct: 711 VKSYV 715
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 112/277 (40%), Gaps = 18/277 (6%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
LV+++K++G+ D T L+ C EA V++E+ ++ F + L+D YG
Sbjct: 236 LVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYG 295
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ +E I ++ ++ Y+ IS + K G L+ +EM +G D
Sbjct: 296 KARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVI 355
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRS---------RHLIDKEGIRAVSFTYLKERKFF 236
T I R G + Y + R+ LI G+R K +
Sbjct: 356 TYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRG------KFPEMM 409
Query: 237 MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
+ + LR G D+ + WN LL + N + F M ++G+ P+ T+
Sbjct: 410 AVFDDLRSAGF-VPDV--VTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLI 466
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
++SR +F + M + PD+ TY V+ A
Sbjct: 467 SSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSA 503
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/286 (19%), Positives = 112/286 (39%), Gaps = 35/286 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ L R + A +L +++ PD + +L+ YAN + + + + E++ +
Sbjct: 499 AVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAE 558
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++ L+ ++ +E ++ R L V + +S +GK ++ +
Sbjct: 559 KIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKV 618
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
E L M ++ +AT N+ + YSR G + E +K S G R ++
Sbjct: 619 EEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSS-------GARPDRYS 671
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y N ++ +Y +MK R F M +G PD
Sbjct: 672 Y----------------------------NTMIYAYGRKGQMKEASRLFSEMKSSGLIPD 703
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ T+NI ++ SMF + + +M P+ TY ++ Y
Sbjct: 704 IVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEY 749
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 4/150 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L ++ +G+ PD T L+ G + A ++E+L + ++ + L+
Sbjct: 338 AAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIK 397
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
+G G F E++++ D + R+A +P+V ++ ++ FG+ G + KEM G+
Sbjct: 398 LHGVRGKFPEMMAVFDDL--RSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGY 455
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+ T + I YSR G + Y R+
Sbjct: 456 VPERDTYVSLISSYSRCGLFDQSMEIYKRM 485
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 10/277 (3%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
+A +L++ V+ GL PD T L+ + + +A V+EE+++S + + ++
Sbjct: 276 VALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMV 335
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
+GR G E + ++ + Y+ + F K+G +E +E +E+V GF
Sbjct: 336 SVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFR 395
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERKFF 236
D T N I Y + G L Y ++ D AV++T L K +
Sbjct: 396 KDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPD-----AVTYTVLVDSLGKMDRIS 450
Query: 237 MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
G+ L ++ + ++ L+ +YA + + +R F RM E+G PD + +
Sbjct: 451 EAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVML 510
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
F+R L + M + PD Y ++ A
Sbjct: 511 DVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAA 547
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 132/349 (37%), Gaps = 62/349 (17%)
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC-------------- 129
A+M YA +G +A+ + + + + + L++A + GC
Sbjct: 226 AMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVR 285
Query: 130 ----------FNEIISIIDQVS----------------CRNADLLPEVYSRAISCFGKQG 163
+N +IS Q S CR DL Y+ +S G+ G
Sbjct: 286 QAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECR-PDLW--TYNAMVSVHGRCG 342
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+ + E KE+V +GF D+ T N+ + +++ G + R++R + K G R
Sbjct: 343 KAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVE-------RVERVCEELVKAGFR 395
Query: 224 AVSFTYLKERKFFMLGEFLR-DVGLGRKD----LG----NLLWNLLLLSYAGNFKMKSLQ 274
TY M G+ R D+ LG D +G + + +L+ S ++
Sbjct: 396 KDGITY--NTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAG 453
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ M++AG P L TF+ A+++ D + + M V PD + Y ++D +
Sbjct: 454 KVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 513
Query: 335 LDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
R L M D P + A KG+ H E ++
Sbjct: 514 ARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQ 562
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 7/182 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V GR K A + + +G PD T +L+ +A G V + V EEL+ +
Sbjct: 333 AMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKA 392
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F + ++ YG++G + + + D++ Y+ + GK ++
Sbjct: 393 GFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEA 452
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
L+EM G T +A I Y++ G + E + R+ S G++
Sbjct: 453 GKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVES-------GVKPDRLA 505
Query: 229 YL 230
YL
Sbjct: 506 YL 507
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L++ +K +G+ P +T+ LM Y +G EA+ V L SS+ +S S ++D
Sbjct: 1046 AEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLD 1105
Query: 123 AYGR 126
AY R
Sbjct: 1106 AYLR 1109
>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
Length = 854
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 120/302 (39%), Gaps = 37/302 (12%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
+I + + +LV L R+K H L++ V+ GL PD A++ + +G
Sbjct: 368 LIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGN 427
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VY 152
+ +A ++E++ S + + L+ YG+IG E ++D + R+ L P
Sbjct: 428 LDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMM-LRDEMLQPNDRTC 486
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + + Q ++E N + +M S G D T N Y+R GS E + R
Sbjct: 487 NILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPR 544
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
H K +R ++ Y KM+
Sbjct: 545 MLHNKVKPNVRTCG--------------------------------TIVNGYCEEGKMEE 572
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
R F RM E G HP+L FN F ++ + ++ M+ V PD+VT+ +++
Sbjct: 573 ALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 632
Query: 333 AY 334
A+
Sbjct: 633 AW 634
>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
Length = 831
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 120/302 (39%), Gaps = 37/302 (12%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
+I + + +LV L R+K H L++ V+ GL PD A++ + +G
Sbjct: 345 LIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGN 404
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VY 152
+ +A ++E++ S + + L+ YG+IG E ++D + R+ L P
Sbjct: 405 LDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMM-LRDEMLQPNDRTC 463
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + + Q ++E N + +M S G D T N Y+R GS E + R
Sbjct: 464 NILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPR 521
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
H K +R ++ Y KM+
Sbjct: 522 MLHNKVKPNVRTCG--------------------------------TIVNGYCEEGKMEE 549
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
R F RM E G HP+L FN F ++ + ++ M+ V PD+VT+ +++
Sbjct: 550 ALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 609
Query: 333 AY 334
A+
Sbjct: 610 AW 611
>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g21222; AltName: Full=SNF1-like protein kinase AtC401
gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
Length = 831
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 120/302 (39%), Gaps = 37/302 (12%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
+I + + +LV L R+K H L++ V+ GL PD A++ + +G
Sbjct: 345 LIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGN 404
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VY 152
+ +A ++E++ S + + L+ YG+IG E ++D + R+ L P
Sbjct: 405 LDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMM-LRDEMLQPNDRTC 463
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + + Q ++E N + +M S G D T N Y+R GS E + R
Sbjct: 464 NILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPR 521
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
H K +R ++ Y KM+
Sbjct: 522 MLHNKVKPNVRTCG--------------------------------TIVNGYCEEGKMEE 549
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
R F RM E G HP+L FN F ++ + ++ M+ V PD+VT+ +++
Sbjct: 550 ALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 609
Query: 333 AY 334
A+
Sbjct: 610 AW 611
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 41/317 (12%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
R++ R C S + L + K A + +++ ++G PD T L+ YA
Sbjct: 321 REMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAE 380
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE-- 150
G+V++ ++ + + V V + L+DAYG+ G +E + I Q+ R ++P+
Sbjct: 381 GYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERG--VMPDAW 438
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y I+ F + G+L + +M++ G D+ I+Y SL + +G L
Sbjct: 439 TYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDT------IVY----NSLIQGFCMHGNL 488
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+++ LI + R G+ R + + +N ++ S ++
Sbjct: 489 VKAKELISEMMSR----------------------GIPRPN--TVFFNSIINSLCKEGRV 524
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
Q F + G PD+ TFN + + L+ M + PD+VTY +
Sbjct: 525 VEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSAL 584
Query: 331 VDAYLDKRLGRNLDFGL 347
+D Y R GR +D GL
Sbjct: 585 LDGYC--RNGR-IDDGL 598
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 92/227 (40%), Gaps = 5/227 (2%)
Query: 147 LLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
++P+V YS I K ++ E L++M+S GF D T N I YS G E
Sbjct: 258 VVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETA 317
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ + R + D + + K K EF + + +++LL Y
Sbjct: 318 GMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGY 377
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
A + + F M G D + +NI A+ + M + L M+ V PD
Sbjct: 378 AAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDA 437
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
TYG V+ A+ R+GR D + K N + + D V+ + +G
Sbjct: 438 WTYGTVIAAF--SRMGRLAD-AMDKFNQMIAMGLKPDTIVYNSLIQG 481
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 120/320 (37%), Gaps = 13/320 (4%)
Query: 25 HPKNGDLARKIIRYRKQEGFVD---------CASLVEDLGRKKKPHLAHQLVNTVKSEGL 75
H K D A ++ +R E V+ SL ED ++ L H +V KS G
Sbjct: 166 HAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVK--KSGGC 223
Query: 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135
P+ + ++ + G V +A ++ E++ V V S +DA + ++
Sbjct: 224 SPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAEL 283
Query: 136 IIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
++ Q+ + Y+ I + GQ + +EM RG D T N+++
Sbjct: 284 VLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLC 343
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF-MLGEFLRDVGLGRKDLGN 254
+ G E + + H D + Y E ML F G G +
Sbjct: 344 KHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIV-ADH 402
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
++N+L+ +Y M F +M E G PD T+ AFSRM D
Sbjct: 403 SVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQ 462
Query: 315 MKHESVGPDLVTYGCVVDAY 334
M + PD + Y ++ +
Sbjct: 463 MIAMGLKPDTIVYNSLIQGF 482
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 10/277 (3%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
+A +L++ V+ GL PD T L+ + + +A V+EE+++S + + ++
Sbjct: 116 VALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMV 175
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
+GR G E + ++ + Y+ + F K+G +E +E +E+V GF
Sbjct: 176 SVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFR 235
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERKFF 236
D T N I Y + G L Y ++ D AV++T L K +
Sbjct: 236 KDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPD-----AVTYTVLVDSLGKMDRIS 290
Query: 237 MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
G+ L ++ + ++ L+ +YA + + +R F RM E+G PD + +
Sbjct: 291 EAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVML 350
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
F+R L + M + PD Y ++ A
Sbjct: 351 DVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAA 387
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/357 (21%), Positives = 134/357 (37%), Gaps = 62/357 (17%)
Query: 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC------ 129
LP A+M YA +G +A+ + + + + + L++A + GC
Sbjct: 58 LPTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVA 117
Query: 130 ------------------FNEIISIIDQVS----------------CRNADLLPEVYSRA 155
+N +IS Q S CR DL Y+
Sbjct: 118 LELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECR-PDLW--TYNAM 174
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
+S G+ G+ + E KE+V +GF D+ T N+ + +++ G + R++R
Sbjct: 175 VSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVE-------RVERVCE 227
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLR-DVGLGRKD----LG----NLLWNLLLLSYAG 266
+ K G R TY M G+ R D+ LG D +G + + +L+ S
Sbjct: 228 ELVKAGFRKDGITY--NTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGK 285
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
++ + M++AG P L TF+ A+++ D + + M V PD +
Sbjct: 286 MDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLA 345
Query: 327 YGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
Y ++D + R L M D P + A KG+ H E ++
Sbjct: 346 YLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQ 402
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 7/182 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V GR K A + + +G PD T +L+ +A G V + V EEL+ +
Sbjct: 173 AMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKA 232
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F + ++ YG++G + + + D++ Y+ + GK ++
Sbjct: 233 GFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEA 292
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
L+EM G T +A I Y++ G + E + R+ S G++
Sbjct: 293 GKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVES-------GVKPDRLA 345
Query: 229 YL 230
YL
Sbjct: 346 YL 347
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L++ +K +G+ P +T+ LM Y +G EA+ V L SS+ +S S ++D
Sbjct: 886 AEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLD 945
Query: 123 AYGR 126
AY R
Sbjct: 946 AYLR 949
>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 478
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 108/259 (41%), Gaps = 46/259 (17%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VYS+ IS GK+GQ + EM + G DS+ NA I
Sbjct: 134 VYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDSSVYNALI------------------- 174
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ HL K+ +A+ LG F + G+ R + +N+LL ++A +
Sbjct: 175 --TAHLHSKDKAKAL---------IKALGYFEKMKGMQRCQPNVVTYNILLRAFAQARNV 223
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ F + ++ PD+ T+N A+ + M ++ L MK PD++T+ +
Sbjct: 224 NQVNALFKDLDQSIVSPDIYTYNGVMDAYGKNGMIREMESVLSRMKSNQCKPDIITFNLL 283
Query: 331 VDAYLDKRLGRNLDFG------LSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFK 384
+D+Y G+ DF S ++ + P + T + +GK ++E+ L+
Sbjct: 284 IDSY-----GKKQDFDKMEQVFKSLLHSKERPTLPTFNSMITNYGKARQKENAESVLQKM 338
Query: 385 RQRKW-----TYRKLIAVY 398
+ K+ TY LI +Y
Sbjct: 339 TKMKYTPNFITYESLIMMY 357
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 60/329 (18%), Positives = 136/329 (41%), Gaps = 11/329 (3%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN----GFVLEAQVVWE 103
+ L+ +G+K + +A L + +++ G PD+S AL+ + ++ +++A +E
Sbjct: 136 SKLISVMGKKGQTRMAMWLFSEMRNSGCRPDSSVYNALITAHLHSKDKAKALIKALGYFE 195
Query: 104 ELLS-SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR--AISCFG 160
++ +V + L+ A+ + N++ ++ + + + P++Y+ + +G
Sbjct: 196 KMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLD--QSIVSPDIYTYNGVMDAYG 253
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K G + ME+ L M S D T N I Y + +ME + L S+
Sbjct: 254 KNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKERPTLP 313
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
++ Y K R+ L+ + + + + L++ Y + + F M
Sbjct: 314 TFNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYESLIMMYGFCDSVSKAREIFDDM 373
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
E+G ++T N + + + L ++ ++ + PD TY + AY +
Sbjct: 374 IESGKEVKVSTLNAMLDVYCLNGLPMEADLLFDNARNVGLLPDSTTYKLLYKAYTKANMK 433
Query: 341 RNLDFGLSKMNLDDSPVVSTDPYVFEAFG 369
+ + L M+ D ++ + +A G
Sbjct: 434 KLVQKLLKHMDRDG--IIPNKRFFLDALG 460
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 58/311 (18%), Positives = 119/311 (38%), Gaps = 48/311 (15%)
Query: 25 HPKNGDLARKIIR----YRKQEGFVDCAS-------LVEDLGRKKKPHLAHQLVNTVKSE 73
H + D A+ +I+ + K +G C L+ + + + + L +
Sbjct: 177 HLHSKDKAKALIKALGYFEKMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQS 236
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
+ PD T +M Y NG + E + V + S+ + + L+D+YG+ F+++
Sbjct: 237 IVSPDIYTYNGVMDAYGKNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKM 296
Query: 134 ISIIDQ-VSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+ + + LP ++ I+ +GK Q E E+ L++M ++ + T + I+
Sbjct: 297 EQVFKSLLHSKERPTLP-TFNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYESLIM 355
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
Y S++ ++R + D D+ K++
Sbjct: 356 MYGFCDSVS----------KAREIFD-------------------------DMIESGKEV 380
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
N +L Y N F G PD TT+ + A+++ +M + L
Sbjct: 381 KVSTLNAMLDVYCLNGLPMEADLLFDNARNVGLLPDSTTYKLLYKAYTKANMKKLVQKLL 440
Query: 313 EHMKHESVGPD 323
+HM + + P+
Sbjct: 441 KHMDRDGIIPN 451
>gi|168056841|ref|XP_001780426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695174|dbj|BAD67152.1| PpPPR_38 [Physcomitrella patens]
gi|162668102|gb|EDQ54716.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 132/335 (39%), Gaps = 29/335 (8%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
+++ + G K K +N K D+ ++ R R C L+ G P L
Sbjct: 182 SYTALIQGFGKLKSYN--------KVTDVFSRMQRNRCPPDLKLCTVLISTYGNGGLPVL 233
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + +++GL PD AL+ YA G EA+ ++L V + + L+
Sbjct: 234 AESAMQYAQAQGLQPDAIAYTALVHAYAQEGLWEEAEKTLSDMLDVGIV-DDRPYAALVA 292
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
AYG+ G + + I++ + + +Y+ I+ K E L+ M + G
Sbjct: 293 AYGKAGLTDNVNKILETMKASGVEASTTLYNTLINIHSKAEAPEKARAVLQLMQADGCQC 352
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T + + YSR E+ G +KR+ + Y + + L
Sbjct: 353 DEITYTSVMEAYSRNKQPLMAESMMGEMKRAGIQPGPVSYGVLISAYCRAGRLGDAERIL 412
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
R + + ++N+++ YA + KM+S +R F M + G PD
Sbjct: 413 RAMQNAKCKPTVEIYNMMISGYA-SAKMRSQAERMFQTMQDCGLRPDAAE---------- 461
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
D ++ ++ + + P+ VTY ++ AY D
Sbjct: 462 -----DCYIRMQQLGCK---PNAVTYKILLKAYTD 488
>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
Length = 680
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/377 (19%), Positives = 141/377 (37%), Gaps = 40/377 (10%)
Query: 50 LVEDL----GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
LV D+ + P A QL+ ++ GL +TL +++ A++G LEA+ ++EEL
Sbjct: 242 LVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEEL 301
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN--------------------- 144
S + + L+ Y + G + S++ ++ R
Sbjct: 302 RQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRW 361
Query: 145 ------------ADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
D+ P V+SR ++ F +G+ + LKEM S G D N
Sbjct: 362 ESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVV 421
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
I + +F L T + R+ D+ + + K + + E +
Sbjct: 422 IDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGC 481
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+N+++ SY + ++R +M G P++ T + + F D
Sbjct: 482 LPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIE 541
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFG 369
LE MK + P Y +++AY + L M D P + + AFG
Sbjct: 542 CLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFG 601
Query: 370 KGDFHSSSEAFLEFKRQ 386
+ + + A L++ ++
Sbjct: 602 EDRRDAEAFAVLQYMKE 618
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 37/309 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-----SSFVLS---- 113
A +V+ ++ G+ PD T L+ Y N G A++V +E+ + +SFV S
Sbjct: 329 AESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLA 388
Query: 114 -----------VQVLSDL---------------MDAYGRIGCFNEIISIIDQVSCRNADL 147
QVL ++ +D +G+ C + ++ D++ +
Sbjct: 389 GFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEP 448
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
++ I C K G+ + E + M RG + T N I Y +M+
Sbjct: 449 DRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLL 508
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV-GLGRKDLGNLLWNLLLLSYAG 266
G++K L + + Y K +F E L ++ +G K + ++N L+ +YA
Sbjct: 509 GKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKP-SSTMYNALINAYAQ 567
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ F M+ G P L N AF + L++MK V PD+VT
Sbjct: 568 RGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVT 627
Query: 327 YGCVVDAYL 335
Y ++ A +
Sbjct: 628 YTTLMKALI 636
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 139/344 (40%), Gaps = 18/344 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L+ GR + + +L++ +K E + P T ++ A G + WEELL
Sbjct: 185 TALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGG------LDWEELLG 238
Query: 108 -------SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISC 158
+ + L+ A R G +E + ++ +LP++ YS +
Sbjct: 239 LFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMN--EGGILPDITTYSYLVET 296
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
FGK +LE + LKEM S G D + N + +++ GS+ E + +++ + + +
Sbjct: 297 FGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPN 356
Query: 219 KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
+ Y + ++ + + ++ + + +N+L+ + K + F
Sbjct: 357 AATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFH 416
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
M E P++ T+ A + + D L HM + V P Y V++AY
Sbjct: 417 DMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAA 476
Query: 339 LGRNLDFGLSKMN-LDDSPVVSTDPYVFEAFGKGDFHSSSEAFL 381
L + MN + P V T + + F KG + SEA L
Sbjct: 477 LYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAIL 520
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/317 (19%), Positives = 127/317 (40%), Gaps = 18/317 (5%)
Query: 29 GDLARKIIRYRKQEGFVDCAS----LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
GD A + R + G + + LVE G+ + +L+ ++S G PD ++
Sbjct: 268 GDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNV 327
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+ +A +G + EA V+ ++ + V + S L++ YGR G ++++ + ++ N
Sbjct: 328 LLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSN 387
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
+ Y+ I+ FG+ G + + +MV + T I + G L E
Sbjct: 388 TEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGK-GGLHE-- 444
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL-------LW 257
K+ ++++G+ S Y + + + + + + +
Sbjct: 445 ----DAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETY 500
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
N L+ +A K + ++M ++G + TFN AF + F + + M+
Sbjct: 501 NSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEK 560
Query: 318 ESVGPDLVTYGCVVDAY 334
PD T V+ Y
Sbjct: 561 ARCDPDEQTLEAVLSVY 577
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 10/200 (5%)
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
Q+ C+ + +Y+ I G++G LE + EM S G + + A I Y R G
Sbjct: 139 QIWCKPNE---HIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNG 195
Query: 199 SLTEMETAYGRLKRSRH----LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
R+K+ R L I + + L + L +R G+ + D+
Sbjct: 196 QYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGI-QADI-- 252
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ +N LL + A + F M+E G PD+TT++ F +++ + L+
Sbjct: 253 VTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKE 312
Query: 315 MKHESVGPDLVTYGCVVDAY 334
M+ PD+ +Y +++A+
Sbjct: 313 MESGGSFPDITSYNVLLEAH 332
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 111/286 (38%), Gaps = 35/286 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ LG + A + +K GL+P AL+ Y G + +A+ + E+ S
Sbjct: 296 AVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERS 355
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F S L+DAY G + ++ ++ V+SR ++ + +G+ +
Sbjct: 356 GFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKS 415
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
L+EM + G S D N I FG ++ A R R EG++ + T
Sbjct: 416 FQVLREMRNSGVSPDRHFYNVMI---DTFGKCNCLDHALATFDRMRM----EGVQPDAVT 468
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
WN L+ + + + F M E+G P
Sbjct: 469 ----------------------------WNTLIDCHCKSGHHNKAEELFEAMQESGCSPC 500
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
TT+NI +F + D+ L M+ + + ++VTY +VD Y
Sbjct: 501 TTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIY 546
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 118/311 (37%), Gaps = 41/311 (13%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS-----SFVLS---- 113
A +V+ ++ G PD T L+ YAN G A++V +E+ +S S+V S
Sbjct: 345 AESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILA 404
Query: 114 -----------VQVLSDL---------------MDAYGRIGCFNEIISIIDQVSCRNADL 147
QVL ++ +D +G+ C + ++ D++
Sbjct: 405 SYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQP 464
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
++ I C K G E + M G S + T N I + +++T
Sbjct: 465 DAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLL 524
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
G+++ L + + Y + +F E ++ VGL + ++N L+ +Y
Sbjct: 525 GKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKP---SSTMYNALINAY 581
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
A + F M G P + N AF + L++MK + PD+
Sbjct: 582 AQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDV 641
Query: 325 VTYGCVVDAYL 335
VTY ++ A +
Sbjct: 642 VTYTTLMKALI 652
>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
Length = 577
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 113/267 (42%), Gaps = 10/267 (3%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
+A +L++ V+ GL PD T L+ + + +A V+EE+++S + + ++
Sbjct: 49 VALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMV 108
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
+GR G E + ++ + Y+ + F K+G +E +E +E+V GF
Sbjct: 109 SVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFR 168
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERKFF 236
D T N I Y + G L Y ++ D AV++T L K +
Sbjct: 169 KDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPD-----AVTYTVLVDSLGKMDRIS 223
Query: 237 MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
G+ L ++ + ++ L+ +YA + + +R F RM E+G PD + +
Sbjct: 224 EAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVML 283
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPD 323
F+R L + M + PD
Sbjct: 284 DVFARSDETRKLMVLYRAMIKDGYKPD 310
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 7/176 (3%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
GR K A + + +G PD T +L+ +A G V + V EEL+ + F
Sbjct: 112 GRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDG 171
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKE 174
+ ++ YG++G + + + D++ Y+ + GK ++ L+E
Sbjct: 172 ITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEE 231
Query: 175 MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230
M G T +A I Y++ G + E + R+ S G++ YL
Sbjct: 232 MADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVES-------GVKPDRLAYL 280
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/363 (19%), Positives = 145/363 (39%), Gaps = 22/363 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG++ + +++ +K G PD T ++ G V E+ + F
Sbjct: 458 LGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPD 517
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
+ + L+ AYGR G ++ + ++ Y+ ++ ++G + E+ +
Sbjct: 518 KETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVL 577
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSL-----TEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+M +GF + + + + YS+ G++ EME G + S L+ R + T
Sbjct: 578 DMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLL-----RTLVLT 632
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
K R+ + + L ++ N +L + N K++ + +G P+
Sbjct: 633 NYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPN 692
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348
L T+N ++R+ W L+ +++ + PD+V+Y V+ + K L + LS
Sbjct: 693 LVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILS 752
Query: 349 KMNLDDSPVVSTDPYVFEAF-----GKGDFHSSSEAFLEFKRQ----RKWTYRKLIAVYL 399
+M + V P F F G G F + E + TY+ +I Y+
Sbjct: 753 EMTANG---VQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDGYI 809
Query: 400 KKQ 402
K +
Sbjct: 810 KAK 812
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 105/287 (36%), Gaps = 35/287 (12%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ GR+ A + + +K G P +T +++ + G EA + +E+
Sbjct: 311 CTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEME 370
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
++ ++L+ AY R G +E ++ID ++ + Y+ I+ +GK G +
Sbjct: 371 DNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDAD 430
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+M G + T N ++ G+ RS +I
Sbjct: 431 KALEVFGQMKELGCVPNVCTYNNVLVL-------------LGKRSRSEDMI--------- 468
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+ L D+ L + WN +L K K + + M GF
Sbjct: 469 -------------KILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFE 515
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
PD TFN A+ R D+ M P + TY +++A
Sbjct: 516 PDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNA 562
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 119/280 (42%), Gaps = 3/280 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V+ LGR+ + +A +L + + E D ++ YA G A ++E++ +
Sbjct: 208 MVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETG 267
Query: 110 FVLSVQVLSDLMDAYGRIG-CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++ + ++D YG++G ++ I+ ++D++ + + + IS G++G L+
Sbjct: 268 LDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEA 327
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
++ G+ +AT N+ + + + G TE ++ + D +
Sbjct: 328 RRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAA 387
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y++ F G + D + + N + + ++ +Y F +M E G P
Sbjct: 388 YVRA-GFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVP 446
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
++ T+N V + S D+ L MK PD +T+
Sbjct: 447 NVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITW 486
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 17/153 (11%)
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS-LEHMKHE 318
+L +YA K K F +M E G P L T+N+ + +M W + L L+ M+ +
Sbjct: 243 VLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSK 302
Query: 319 SVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD------SPVVSTDPYVFEAFGKGD 372
+ D T V+ A GR ++ DD P +T + + FGK
Sbjct: 303 GLEFDEFTCTTVISA-----CGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAG 357
Query: 373 FHSSSEAFLEFKRQRKW-----TYRKLIAVYLK 400
++ + L+ TY +L+A Y++
Sbjct: 358 VYTEALNILKEMEDNNCEPDAITYNELVAAYVR 390
>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
Length = 595
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 128/295 (43%), Gaps = 13/295 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ G+ K+P + ++ N +KS G P+ T AL+ +A G +A+ V+EE+ +
Sbjct: 286 MINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAG 345
Query: 110 FVLSVQVLSDLMDAYGRIGC---FNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
V + LM+AY R G +EI S++ + C P+ Y+ + +G+ G
Sbjct: 346 HEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCE-----PDRASYNILVDAYGRAGL 400
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
E E +E+ RG S + + ++R G+ T E +L +S D + A
Sbjct: 401 HEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNA 460
Query: 225 VSFTYLKERKFFMLGEFLRDVGL-GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
+ Y + + + + G D+G +N+ + +Y + ++ F ++
Sbjct: 461 MLNAYARAGRLDDMERLFAAMERRGDADVGT--YNVAVNAYGRAGYVGRMEAAFAAVAAR 518
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
G D+ T+ R A++R + +E M PD T ++ A D+R
Sbjct: 519 GLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDER 573
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/285 (17%), Positives = 102/285 (35%), Gaps = 35/285 (12%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+E G+K++ + A + + +P T L+ Y N G + A+ V E+
Sbjct: 181 LIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHG 240
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ V + +D + C + + + ++ E ++ I+ +GK Q
Sbjct: 241 IPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSM 300
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM S G + T A + ++R G + E + ++++ H D
Sbjct: 301 KVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDV---------- 350
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+N L+ +Y+ + F M G PD
Sbjct: 351 -------------------------YAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDR 385
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++NI A+ R + D E +K + P + ++ ++ A+
Sbjct: 386 ASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAH 430
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 108/286 (37%), Gaps = 40/286 (13%)
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQ 162
L SSF + + L+++YG+ N+ SI ++ A +P + Y+ + +
Sbjct: 166 LYRSSFRPDIICYNLLIESYGKKRQLNKAESIY--MALLEAQCVPTEDTYALLLRAYCNA 223
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G L E + EM G ++ NA++ + + Y R+KR R + E
Sbjct: 224 GSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTE-- 281
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+FT L++ Y + S + F M
Sbjct: 282 ---TFT------------------------------LMINVYGKAKQPMSSMKVFNEMKS 308
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
G P++ T+ AF+R + E M+ PD+ Y +++AY L +
Sbjct: 309 IGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQG 368
Query: 343 LDFGLSKM-NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQR 387
S M ++ P ++ + +A+G+ H +EA E +QR
Sbjct: 369 ASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQR 414
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P A ++ + ++ G PD ++ L+ Y G +A+ V+EEL
Sbjct: 355 ALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQR 414
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLE 166
+++ L+ A+ R G ++ Q+ + L P+ ++ ++ + + G+L+
Sbjct: 415 GMSPTMKSHMLLLAAHARSGNATRCEEVMAQL--HKSGLTPDTFALNAMLNAYARAGRLD 472
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
ME M RG D T N + Y R G + ME
Sbjct: 473 DMERLFAAMERRG-DADVGTYNVAVNAYGRAGYVGRME 509
>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 448
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 130/291 (44%), Gaps = 12/291 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM-LCYANNGFVLEAQVVWEELLS 107
+++ G ++ A +LV ++ G++ + T ALM +C N L A V+ +LL
Sbjct: 78 TIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELEL-ALDVYGQLLR 136
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
++ + L+D +G++G + E + ++D + + PEV Y+ +S + GQ
Sbjct: 137 EGCTPNLVTYNILIDIHGKMGNWQEAVQVLDAL--EDQGTKPEVRTYNTILSACNRSGQP 194
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR---SRHLIDKEGI 222
E + M++ G + T A I Y + G + E + + R R++I +
Sbjct: 195 EHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSL 254
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ K ++ + E L ++ + +N LL + A + K+ Q F +M
Sbjct: 255 ISACE---KAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPS 311
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
G PD ++ I AF R + + +L+ M+ + PD+ Y V++A
Sbjct: 312 CGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEA 362
>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 772
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 124/286 (43%), Gaps = 40/286 (13%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
+GRK + + +++ ++ E ++ +T L+ Y+++G + EA+ ++EE+ + +
Sbjct: 263 VGRKDRKGV-DEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMD 321
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQGQLELMENT 171
V V S ++ R+G ++ D++S R D++P Y I K GQ+E E
Sbjct: 322 VYVYSSMISWSRRLGNMKRAFALFDEMSQR--DIVPNAHTYGALIGGVCKAGQMEAAEIL 379
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
L EM S+G ++ N + Y R G + E R + +++K+GI A FTY
Sbjct: 380 LLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEA-------LRLQAIMEKKGINADVFTY-- 430
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
+L L L R D + N M E G P++ T
Sbjct: 431 ----NILANGL--CKLHRYDEAKCILN--------------------SMVEKGVKPNVVT 464
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
F + + + + M+ + P+++TY ++DAY K
Sbjct: 465 FTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKK 510
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 116/276 (42%), Gaps = 12/276 (4%)
Query: 64 HQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFV-LSVQVLSDLMD 122
H++V + K E + + TL +LC G V +A+ + +E++ V +V + L++
Sbjct: 204 HRMVESNKFE-IRVQSLTLVIDVLC--RRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLN 260
Query: 123 AY----GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
AY R G +EI+ ++++ YS I + G +E E +EM +
Sbjct: 261 AYVGRKDRKG-VDEILKLMEK---EQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREK 316
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
+D ++ I + R G++ + + + + + A+ K +
Sbjct: 317 NIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAA 376
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
L ++ DL +++N + Y KM R M + G + D+ T+NI A
Sbjct: 377 EILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANG 436
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ + + L M + V P++VT+ ++ Y
Sbjct: 437 LCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIY 472
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 14/290 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
LV LG+ + A + + GL P+ T LM + G + A ++ E+
Sbjct: 141 LVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRG 200
Query: 110 FVLSVQVLSDLMDAY---GRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
F SV + L+DA GR+G ++ + C P+ YS ++ GK G+
Sbjct: 201 FQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCS-----PDSYTYSTLVNGLGKSGR 255
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+E +EMV RG +VD N+ + ++ G++ + + R D
Sbjct: 256 VEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNT 315
Query: 225 VSFTYLKERKFFMLGE-FLRDVGLG-RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ K K E F R V G + DL + +N+L+ SYA ++ M E
Sbjct: 316 IMDALGKANKPDAAREVFARMVESGCKPDL--ISYNILIDSYARFGDAAQARQMLEEMVE 373
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
AGF P+ T+N + + LE M+ PD+VTY ++D
Sbjct: 374 AGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMD 423
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 125/324 (38%), Gaps = 43/324 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ GR K A L N +S P L+ N+G A++V+++L+
Sbjct: 36 LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG 95
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
L + L+ +GR G + + + ++ + ++ Y ++ GK G+++
Sbjct: 96 CQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEAR 155
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSL-------TEME------------------ 204
+ M+ RG + + T N + + + G L EM+
Sbjct: 156 SFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDAL 215
Query: 205 TAYGRLKRSRHLIDK---EGIRAVSFTYLK-----------ERKFFMLGEFLRDVGLGRK 250
+ GR+ +R L K +G S+TY E + E + D G+
Sbjct: 216 CSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMV-DRGVA-V 273
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
DL N +N LL + A M + + MS GFHPD +FN A + +
Sbjct: 274 DLVN--YNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAARE 331
Query: 311 SLEHMKHESVGPDLVTYGCVVDAY 334
M PDL++Y ++D+Y
Sbjct: 332 VFARMVESGCKPDLISYNILIDSY 355
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 82/169 (48%), Gaps = 10/169 (5%)
Query: 24 THPKNGDLAR--KIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLP 77
T K G++ R K+++ ++GF A ++++ LG+ KP A ++ + G P
Sbjct: 284 TLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKP 343
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
D + L+ YA G +A+ + EE++ + F+ + + L+ G +E +++
Sbjct: 344 DLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVL 403
Query: 138 DQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
+++ A P+V Y+R + GK+G+ + ++M +G D+
Sbjct: 404 EEME--TAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDT 450
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++LV LG+ + AH++ + G+ D +L+ A G + + +E+
Sbjct: 244 STLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSR 303
Query: 108 SSFVLSVQVLSDLMDAYGRIG---CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
F + +MDA G+ E+ + + + C+ DL+ Y+ I + + G
Sbjct: 304 KGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCK-PDLIS--YNILIDSYARFGD 360
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSR-------FGSLTEMETAYGR 209
L+EMV GF ++ T N+ I + + F L EMETA R
Sbjct: 361 AAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCR 412
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 108/278 (38%), Gaps = 24/278 (8%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L+ + +EG +TL L+ Y +A ++ + S + +V + L+D
Sbjct: 17 LLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILV 76
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
G F + ++ + L Y+ I FG+ GQL+ +EM +G D
Sbjct: 77 NSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEY 136
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID---KEGIRAVSFTY-LKERKFFMLGEF 241
T +G L GR++ +R D + G+ TY L F +G+
Sbjct: 137 T----------YGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQL 186
Query: 242 LRDVGLG------RKDLGN--LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
D+ LG R+ + +N+LL + ++ + ++ F +M+ G PD T++
Sbjct: 187 --DMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYS 244
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ + H M V DLV Y ++
Sbjct: 245 TLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLL 282
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 8/296 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + + ++ EG+ PD T +L+ + G ++Q V+ E+ + + L+D
Sbjct: 290 ALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLID 349
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
A + G SI+ + R ++ P V YS I +GK G E + +M G
Sbjct: 350 AVCKGGQMELAASIM--TTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGV 407
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
D + N I Y++ G + A ++R D A+ Y K+ K +
Sbjct: 408 RPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGK-YKDAA 466
Query: 241 FLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
L D G + N+L ++ L+ SY+ + + F AG PD+ ++ +
Sbjct: 467 CLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSC 526
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS 355
+ + D + L+ M + P++VTY ++DAY R G+ K N+ +S
Sbjct: 527 CKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAY--GRYGQADKLEAVKANMPNS 580
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 33/245 (13%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL D T AL+ Y G +A +++++ V +V S L+D+Y + G ++
Sbjct: 441 GLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDV 500
Query: 134 ISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
++ + + A L P+V YS I K G +E L+EM G + T N+ I
Sbjct: 501 SNVFTEF--KRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLI 558
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
Y R+G ++E + S + K G R++ E +R +++
Sbjct: 559 DAYGRYGQADKLEAVKANMPNS---VQKIGERSM--------------EVVRKPPPSQQN 601
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ L +S F M + G P++ TF+ A SR + + +
Sbjct: 602 ASDHTGVLAAVSV------------FHEMQQFGLKPNVVTFSAILNACSRCASLQEASVL 649
Query: 312 LEHMK 316
LE M+
Sbjct: 650 LEQMR 654
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ G++ K A L + +K EGL+P+ T AL+ Y+ G + V+ E +
Sbjct: 451 ALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRA 510
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V + S L+D+ + G + + ++ +++ A + P + Y+ I +G+ GQ +
Sbjct: 511 GLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMT--QAGIQPNIVTYNSLIDAYGRYGQAD 568
Query: 167 LMENTLKEM 175
+E M
Sbjct: 569 KLEAVKANM 577
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 100/280 (35%), Gaps = 60/280 (21%)
Query: 136 IIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
++ QV R+ ++ S IS G+ G++E+ + GF GN Y
Sbjct: 189 MVQQVHLRSE--WSKLASIMISTLGRLGKVEIALDVFNRAQKAGF------GNNVYAY-- 238
Query: 196 RFGSLTEMETAYGRLKRSR------HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
+ M +AYGR R R + K G + TY + G G
Sbjct: 239 -----SAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITY---------NTIIDACGKGG 284
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
DL L F M + G PD TFN SR ++ D
Sbjct: 285 VDLKQAL------------------DIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQ 326
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNL----DDSPVVSTDPYVF 365
M+ + D+ T+ ++DA G ++ S M + SP V T +
Sbjct: 327 RVFAEMQRRGIEQDIFTFNTLIDAVCK---GGQMELAASIMTTMRGKNISPNVVTYSTMI 383
Query: 366 EAFGK-GDFHSSSEAFLEFK----RQRKWTYRKLIAVYLK 400
+ +GK G F + + + K R + +Y LI +Y K
Sbjct: 384 DGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAK 423
>gi|356564951|ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 488
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/352 (20%), Positives = 131/352 (37%), Gaps = 84/352 (23%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
D+ R+ Y+ +EG C L+ LG+ +PH AHQL T+ EGL P AL+ Y
Sbjct: 114 DMLREQTFYQPKEG--TCMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALLAAY 171
Query: 90 ANNGFVLEA------------------------------------QVVWEELLSSSFVLS 113
+ + EA Q+++EE+ S +
Sbjct: 172 CRSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVQLLYEEMAERSITPN 231
Query: 114 VQVLSDLMDAYGRIGCFNE----IISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLEL 167
+ ++ YG+ G F++ + S++ +C+ P+V++ IS FG GQ+++
Sbjct: 232 TVTQNIVLGGYGKAGMFDQMEKVLSSMLQSTTCK-----PDVWTMNTIISVFGNMGQIDM 286
Query: 168 -----------------------------------MENTLKEMVSRGFSVDSATGNAFII 192
M + ++ M F ++T N I
Sbjct: 287 TEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 346
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
++ G ME + +++ D + + + Y F + +R G
Sbjct: 347 AFADAGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKVISSVRLAGKLEIPE 406
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+N +L + A + ++R F RM ++ PD TT+ I A+ + M
Sbjct: 407 NITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTIMIEAYRKEGM 458
>gi|302810470|ref|XP_002986926.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
gi|300145331|gb|EFJ12008.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
Length = 458
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 114/289 (39%), Gaps = 4/289 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++E LG+ K+P A L T+ ++G P ALM Y + + A V + + ++
Sbjct: 63 MLEMLGKCKRPDEAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATP 122
Query: 110 FV-LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V S L+ + G + ++ ++ R Y+ + + K G L+ +
Sbjct: 123 HCSPDVFTYSLLIKSCCDCGQLSRAADLLADMTARGIQPNRVTYNIILDAYAKCGSLDKL 182
Query: 169 ENTLKEMV---SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ +M+ S D + NA + + G + ME + RL D + ++
Sbjct: 183 HDLALQMLQSPSPSCRPDHWSRNAIVKGFGNRGDIRRMEEWFQRLTTPSDGPDSLTLHSL 242
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y K F + +R + + + +N+L+ +Y + + + F M G
Sbjct: 243 MAAYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGGV 302
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD T+ + + M L LE M V PD Y V+DAY
Sbjct: 303 RPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAY 351
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 20/183 (10%)
Query: 69 TVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG 128
T S+G PD+ TL +LM YA + V + + + + L++AYGR G
Sbjct: 228 TTPSDG--PDSLTLHSLMAAYAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAG 285
Query: 129 CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN 188
+++ + C Y I+ +GK G + L++M D+A N
Sbjct: 286 RKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYN 345
Query: 189 AFIIYYSRFGSLTEMETAYGRLK------------------RSRHLIDKEGIRAVSFTYL 230
+ + Y R ++ ++ + ++ RS+ L DK + AV L
Sbjct: 346 SVLDAYRRASDISSIDRYFAAMQEQGCKPDHLTYNILIQAYRSQGLTDKADVMAVEQEKL 405
Query: 231 KER 233
K+R
Sbjct: 406 KQR 408
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/390 (22%), Positives = 158/390 (40%), Gaps = 40/390 (10%)
Query: 27 KNGDLARKIIRYRKQE-------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDN 79
K GD + RK E V +++++ L + + A L ++ +G+ PD
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
T ++++ + ++G +A+ + +E+L V + L++A+ + G F E + D+
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDE 350
Query: 140 VSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
+ R ++P Y+ I F KQ +L+ E+ M ++G S D T I Y
Sbjct: 351 MLPRG--IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA 408
Query: 198 GSLTE-METAYGRLKRSRHLIDKEGIRAVSFTY-LKERKFFMLGEFLRDVGLGRKDLGN- 254
+ + ME H + + G+ A + TY F ++G+ + L ++ + +
Sbjct: 409 KRIDDGMELL--------HEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG 460
Query: 255 -----LLWNLLLLSYAGNFKMKSLQREFMRMSEA-----------GFHPDLTTFNIRAVA 298
+ N LL N K+K F M ++ G PD+ T+NI
Sbjct: 461 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICG 520
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPV 357
F + E M H + PD +TY ++D + RL +S + SP
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 580
Query: 358 VSTDPYVFEAFGK-GDFHSSSEAFLEFKRQ 386
V T + + K G E F E R+
Sbjct: 581 VVTFNTLINGYCKAGRVDDGLELFCEMGRR 610
>gi|297802950|ref|XP_002869359.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315195|gb|EFH45618.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 906
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 126/292 (43%), Gaps = 8/292 (2%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
+D +++ + G +K +L +KS G++ D ++ Y G + EA V E
Sbjct: 566 MIDIYTVMGEFGEAEKLYL------NLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLE 619
Query: 104 EL-LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162
+ V V + D++ Y + +++ + ++ E+Y+ I+C +
Sbjct: 620 IMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIQKSGIHWDQEMYNCVINCCARA 679
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
L+ + T +EM+ GF+ ++ T N + Y + ++ + KR ++D
Sbjct: 680 LPLDELSRTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKR-HGVVDVISY 738
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ Y K + F + ++++ + +N LL +Y + +M+ + RM +
Sbjct: 739 NTIIAAYGKNKDFTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKK 798
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ PD T+NI + ++ L+ +K +GPDL +Y ++ AY
Sbjct: 799 STSGPDHYTYNIMINIYGEQGWIDEVAGVLKELKESGLGPDLCSYNTLIKAY 850
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 10/269 (3%)
Query: 118 SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177
S L+ AY + G ++ ++++ + R++ +Y I + GQL +
Sbjct: 494 SILVMAYIKHGMVDDCLALLREKKWRDSAFESHLYHLLICSCKESGQLTDAVKLYNHTME 553
Query: 178 RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM 237
++ + I Y+ G E E Y LK S ++D+ G V Y+K
Sbjct: 554 SDEEINLHITSTMIDIYTVMGEFGEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEE 613
Query: 238 LGEFLRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
L + + + ++ L+ +L Y LQ + R+ ++G H D +N
Sbjct: 614 ACSVLEIMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRIQKSGIHWDQEMYNCVI 673
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD--FGLSKMNLDD 354
+R +L + E M P+ VT+ ++D Y +L + ++ F L+K +
Sbjct: 674 NCCARALPLDELSRTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRH--- 730
Query: 355 SPVVSTDPY--VFEAFGKG-DFHSSSEAF 380
VV Y + A+GK DF + S A
Sbjct: 731 -GVVDVISYNTIIAAYGKNKDFTNMSSAI 758
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/185 (18%), Positives = 78/185 (42%), Gaps = 1/185 (0%)
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+V++ I K+G ++L + M+ G + AT + Y + ++ E E A+
Sbjct: 213 QVFNTVIYACTKKGNVKLASKWFQMMLELGVRPNVATIGMLMGLYQKNWNVDEAEFAFSH 272
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
+ R ++ + ++ Y + R + E + + R L W ++L +Y+ K
Sbjct: 273 M-RKFEIVCESAYSSMITIYTRLRLYEKAEEVINLMKQDRVRLKLENWLVMLNAYSQQGK 331
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
M+ + + M AGF P++ +N + ++S + + PD +Y
Sbjct: 332 MEQAESVLISMEAAGFAPNIIAYNTLITGYGKVSKMEAAKSLFHRLSDIGLEPDETSYRS 391
Query: 330 VVDAY 334
+++ +
Sbjct: 392 MIEGW 396
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 73/170 (42%), Gaps = 1/170 (0%)
Query: 41 QEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100
Q+ F +++ +K LA + + G+ P+ +T+ LM Y N V EA+
Sbjct: 209 QQSFQVFNTVIYACTKKGNVKLASKWFQMMLELGVRPNVATIGMLMGLYQKNWNVDEAEF 268
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160
+ + V S ++ Y R+ + + +I+ + L E + ++ +
Sbjct: 269 AFSHMRKFEIVCE-SAYSSMITIYTRLRLYEKAEEVINLMKQDRVRLKLENWLVMLNAYS 327
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+QG++E E+ L M + GF+ + N I Y + + ++ + RL
Sbjct: 328 QQGKMEQAESVLISMEAAGFAPNIIAYNTLITGYGKVSKMEAAKSLFHRL 377
>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
Length = 492
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 136/308 (44%), Gaps = 7/308 (2%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R + YR G L+ LG+ KKP AH+L + EG P+ + AL+ Y
Sbjct: 129 ELMRDQVWYRPYIGIY--IKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTALVSAY 186
Query: 90 ANNGFVLEAQVVWEELLSSSFVLS-VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ +G EA + + + + V+ S L+ + F ++ S++ ++ A +
Sbjct: 187 SRSGRFHEAFNLLDRMKDTPGCQPDVKTYSILIKSCLHAYDFEKVKSLLTDMA--RAGIR 244
Query: 149 PE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P Y+ I +GK + ME+TL +M+S+ D T N+ + + G + ME+
Sbjct: 245 PNTVTYNTLIDAYGKARRFPEMESTLLKMLSQNCKPDIWTMNSTLRAFGSSGQIETMESC 304
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
Y + + S + + + + +Y K + + +G + + + +N+++ ++
Sbjct: 305 YEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGR 364
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
++ ++ F M P+ T A+ R + L +++ + D+V
Sbjct: 365 AGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTVLRIVENSDITLDIVF 424
Query: 327 YGCVVDAY 334
+ C+VDAY
Sbjct: 425 FNCLVDAY 432
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ GR + +KSE + P+ TLC+++ Y G V + + V + +S
Sbjct: 358 VIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTVLRIVENSD 417
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIID 138
L + + L+DAYGR+GC E+ I+D
Sbjct: 418 ITLDIVFFNCLVDAYGRVGCLAEMWDILD 446
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 104/263 (39%), Gaps = 55/263 (20%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKK-PHLAHQLVNTVKSEGLLPDNSTLCALMLC 88
D+AR IR V +L++ G+ ++ P + L+ + S+ PD T+ + +
Sbjct: 237 DMARAGIR----PNTVTYNTLIDAYGKARRFPEMESTLLKML-SQNCKPDIWTMNSTLRA 291
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ ++G + + +E+ +S V +++ + L+D+YG+ + ++ ++++ +
Sbjct: 292 FGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWT 351
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGF--------SVDSATG------------- 187
Y+ I FG+ G LE ME + M S SV A G
Sbjct: 352 IVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTVLR 411
Query: 188 --------------NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
N + Y R G L EM +K R DK T
Sbjct: 412 IVENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDK-------VTCATMI 464
Query: 234 KFFMLG-------EFLRDVGLGR 249
K+F++ ++LRD+ GR
Sbjct: 465 KWFLIKGIDDHRVQYLRDLKDGR 487
>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
Length = 597
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 124/300 (41%), Gaps = 18/300 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ G+ +P + ++ +KS G P+ T AL+ +A G +A+ V+EE+ +
Sbjct: 283 MINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAG 342
Query: 110 FVLSVQVLSDLMDAYGRIGC---FNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
V + LM+AY R G +EI S+++ + C P+ Y+ + FG+ G
Sbjct: 343 HEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCE-----PDRASYNILVDAFGRAGL 397
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ E +E+ +G + + ++R G++ E +L +S D + A
Sbjct: 398 HQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNA 457
Query: 225 VSFTYLKE------RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
+ Y + + F E G D +N+L+ +Y + ++ F
Sbjct: 458 MLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTST--YNVLVNAYGRAGYLDRMEAAFR 515
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
++ G D+ T+ R A++R + E M PD T ++ A D+R
Sbjct: 516 SLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSDER 575
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 104/259 (40%), Gaps = 45/259 (17%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P A ++ + ++ G PD ++ L+ + G EA+ ++EL
Sbjct: 352 ALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQ 411
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLE 166
+++ L+ A+ R G ++ Q+ + L P+ ++ ++ +G+ G+L+
Sbjct: 412 GMRPTMKSHMLLLSAHARSGNVARCEEVMAQL--HKSGLRPDTFALNAMLNAYGRAGRLD 469
Query: 167 LMENTLKEMVSRG-----FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
ME M RG + D++T N + Y R G L ME A+ L G
Sbjct: 470 DMERLFAAM-ERGDGASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSLA-------ARG 521
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ A T+ +G + R +K+ G L R F M
Sbjct: 522 LAADVVTWTSR-----IGAYAR-----KKEYGQCL------------------RVFEEMV 553
Query: 282 EAGFHPDLTTFNIRAVAFS 300
+AG +PD T + A S
Sbjct: 554 DAGCYPDAGTAKVLLAACS 572
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 35/285 (12%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ G+K++ A + +P T L+ Y +G + A+ V E+ +
Sbjct: 178 LIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNG 237
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ V + +D + C + + + ++ Z Y I+ +GK Q
Sbjct: 238 IPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSL 297
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+EM S G + T A + ++R G + E + ++++ H D
Sbjct: 298 RVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDV---------- 347
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+N L+ +Y+ + F M G PD
Sbjct: 348 -------------------------YAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 382
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++NI AF R + + + + +K + + P + ++ ++ A+
Sbjct: 383 ASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAH 427
>gi|242037185|ref|XP_002465987.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
gi|241919841|gb|EER92985.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
Length = 480
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 136/320 (42%), Gaps = 20/320 (6%)
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY--SRA 155
A +++ +LS + V + L+ AYG G +E ++ ++Q+ AD P+ Y S
Sbjct: 145 AAALFKAMLSERLRPTADVYTALVGAYGYSGLLDEALAAVEQMK-GAADCKPDGYTFSVL 203
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY-GRLKRSR 214
I+C K + +L+ L EM G +S NA I Y + EME A L+
Sbjct: 204 INCCAKSRRFDLIPAVLDEMSYLGIECNSVIHNAIIDGYGKAAMFEEMEGALSAMLESGS 263
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--AGNF-KMK 271
++ D + +V Y + + + + L + +N+++ SY AG + KM
Sbjct: 264 NVPDIYTMNSVIGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNIMIKSYGKAGMYDKMM 323
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
S+ F M + F P TFN F R + MK + V P+ +TY +V
Sbjct: 324 SI---FRYMKKRFFSPTAVTFNTVIECFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLV 380
Query: 332 DAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY---VFEAFGK-GDFHSSSEAFLEFKRQR 387
+ Y L + G+ + +++ VV P+ V A+ K GD E K ++
Sbjct: 381 NGYSKAGLLDKVP-GIIRQT-ENTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQLMKEKK 438
Query: 388 ----KWTYRKLIAVYLKKQL 403
K TY +I Y + +
Sbjct: 439 CKPDKITYATMIQAYTAQGM 458
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 75/168 (44%)
Query: 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135
+PD T+ +++ Y N+G E + + E + + ++ +YG+ G +++++S
Sbjct: 265 VPDIYTMNSVIGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNIMIKSYGKAGMYDKMMS 324
Query: 136 IIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
I + R ++ I CFG+ G +E ME + M +G + T + + YS
Sbjct: 325 IFRYMKKRFFSPTAVTFNTVIECFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYS 384
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
+ G L ++ + + + ++D V Y K ++ E L+
Sbjct: 385 KAGLLDKVPGIIRQTENTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQ 432
>gi|15230719|ref|NP_187294.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207273|sp|Q9SQU6.1|PP216_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g06430, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2750; Flags: Precursor
gi|6437546|gb|AAF08573.1|AC011623_6 unknown protein [Arabidopsis thaliana]
gi|20466300|gb|AAM20467.1| unknown protein [Arabidopsis thaliana]
gi|30387593|gb|AAP31962.1| At3g06430 [Arabidopsis thaliana]
gi|332640870|gb|AEE74391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 486
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 146/348 (41%), Gaps = 51/348 (14%)
Query: 13 KFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCAS-LVEDLGRKKKPHLAHQLVNTVK 71
+F P +Q ++ +K+ R K G+V+ + + DL KK+ A ++ + ++
Sbjct: 56 EFPGITEPVNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLR 115
Query: 72 SEGLL-PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
+ P T L++ +G AQ +++E+L +V++ + L+ AY R
Sbjct: 116 EQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLI 175
Query: 131 NEIISIIDQV----SCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
++ SI+D++ C+ P+V YS + Q +L+++ KEM R + ++
Sbjct: 176 DDAFSILDKMKSFPQCQ-----PDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNT 230
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
T N + Y R G +ME +L + L
Sbjct: 231 VTQNIVLSGYGRVGRFDQMEK-------------------------------VLSDMLVS 259
Query: 245 VGLGRKDLGNLLWNL-LLLSYAGNF-KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ D +W + ++LS GN K+ ++ + + G P+ TFNI ++ +
Sbjct: 260 TAC-KPD----VWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKK 314
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
M+ + +E+M+ TY +++A+ D +N++ +M
Sbjct: 315 RMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQM 362
>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 711
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/377 (19%), Positives = 140/377 (37%), Gaps = 40/377 (10%)
Query: 50 LVEDL----GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
LV D+ + P A QL+ ++ GL +TL +++ AN+G LEA+ ++EEL
Sbjct: 273 LVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEEL 332
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR---------------------- 143
S + + L+ Y + G + ++ ++ R
Sbjct: 333 RQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRW 392
Query: 144 -----------NADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
D+ P V+SR ++ + +G+ + LKEM S G D N
Sbjct: 393 ESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVV 452
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
I + +F L T + R+ D+ + + K + + E +
Sbjct: 453 IDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGC 512
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+N+++ SY + ++R +M G P++ T + + F D
Sbjct: 513 LPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIE 572
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFG 369
LE MK + P Y +++AY + L M D P + + AFG
Sbjct: 573 CLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFG 632
Query: 370 KGDFHSSSEAFLEFKRQ 386
+ + + A L++ ++
Sbjct: 633 EDRRDAEAFAVLQYMKE 649
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 37/309 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-----SSFVLS---- 113
A +V+ ++ G+ PD T L+ Y N G A++V +E+ + +SFV S
Sbjct: 360 AELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLA 419
Query: 114 -----------VQVLSDL---------------MDAYGRIGCFNEIISIIDQVSCRNADL 147
QVL ++ +D +G+ C + ++ D++ +
Sbjct: 420 GYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEP 479
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
++ I C K G+ + E + M RG + T N I Y +M+
Sbjct: 480 DRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLL 539
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV-GLGRKDLGNLLWNLLLLSYAG 266
G++K L + + Y K +F E L ++ +G K + ++N L+ +YA
Sbjct: 540 GKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKP-SSTMYNALINAYAQ 598
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ F M+ G P L N AF + L++MK V PD+VT
Sbjct: 599 RGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVT 658
Query: 327 YGCVVDAYL 335
Y ++ A +
Sbjct: 659 YTTLMKALI 667
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 138/333 (41%), Gaps = 23/333 (6%)
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
H A +L+ +KS G PD T ++ AN G + A + L S +V + L
Sbjct: 129 HAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTAL 185
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ A+ R E + +++++ R Y+ + K + ++ +K+M+ GF
Sbjct: 186 IAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGF 245
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKER 233
+ + T N+ + + + G++ + G ++ +G+R TY K +
Sbjct: 246 APNVMTFNSLVDGFCKRGNVDDARKLLG-------IMVAKGMRPNVVTYSALIDGLCKSQ 298
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
KF E L ++ ++ L+ K++ ++ RM+ +G PD+ ++
Sbjct: 299 KFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS 358
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLD 353
AF + + +L+ M+ + PD+VTY V+D +LG+ + + +
Sbjct: 359 SIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLC--KLGKIAEAQVILEQMQ 416
Query: 354 DS----PVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+S P V T V K D ++ L+
Sbjct: 417 ESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLD 449
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 115/294 (39%), Gaps = 9/294 (3%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
LV+ L + A +V + G P+ T +L+ + G V +A+ + +++
Sbjct: 220 LVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG 279
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+V S L+D + F E +++++ R YS I K ++E E
Sbjct: 280 MRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAE 339
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L+ M G + D ++ I + + G L E + +++ R D V
Sbjct: 340 QMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGL 399
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS-----LQREFMRMSEAG 284
K K L + ++ G++L +++ S N KS Q+ RM +AG
Sbjct: 400 CKLGKIAEAQVILEQM----QESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAG 455
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+PD+ T+ + + L+ MK P++VTY ++ R
Sbjct: 456 CNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKAR 509
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 7/191 (3%)
Query: 145 ADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
A P+V Y+ IS F G L L+EM S GF+ D+ T I + G L
Sbjct: 106 ASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDG 165
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLL 261
+ +++ + A K + L E +R+ G NL+ +N+L+
Sbjct: 166 AMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPP----NLVTYNVLV 221
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
+ + + Q +M E GF P++ TFN F + D L M + +
Sbjct: 222 DALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMR 281
Query: 322 PDLVTYGCVVD 332
P++VTY ++D
Sbjct: 282 PNVVTYSALID 292
>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 11/202 (5%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL KI R V +++ LG+ KK H L +K +G PD + L+ +
Sbjct: 423 DLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSF 482
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
G V EA ++EEL +SS + + L++ G+ G +E ++ R L P
Sbjct: 483 GRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEM--REEGLSP 540
Query: 150 EV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
+V YS I CFGK ++E+ EM++ G S + T N + R G E Y
Sbjct: 541 DVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 600
Query: 208 GRLKRSRHLIDKEGIRAVSFTY 229
+LK ++G+ S TY
Sbjct: 601 AKLK-------QQGLTPDSITY 615
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+ L + R +++N +L + K L + +M + G PD+ ++NI +F
Sbjct: 423 DLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSF 482
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD----- 354
R + E +++ S PD++++ +++ LG+N D + M +
Sbjct: 483 GRAGRVEEAVKIFEELENSSCKPDIISFNSLINC-----LGKNGDIDEAHMRFKEMREEG 537
Query: 355 -SPVVSTDPYVFEAFGKGD 372
SP V T + E FGK D
Sbjct: 538 LSPDVVTYSTLIECFGKTD 556
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 8/227 (3%)
Query: 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134
L PD T +++ + G V ++V ++ S F + V V+S + Y + F + I
Sbjct: 102 LKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAI 161
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ D++ R+ ++ ISC+ + GQ E +EM GF DS T I
Sbjct: 162 KLFDEMPERDV----ASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSC 217
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
+R L + + L RS +D A+ Y K M E + RK++
Sbjct: 218 ARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI--QRKNV-- 273
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ WN ++ Y+ KS F RM E G P LTT + +A SR
Sbjct: 274 VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR 320
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 102/253 (40%), Gaps = 20/253 (7%)
Query: 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
+P A +L +K G PD+ TL ++ A + + + EL+ S F L V S
Sbjct: 187 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSS 246
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+D YG+ GC + +Q+ +N ++ I+ + +G + + M
Sbjct: 247 ALVDMYGKCGCLEMAKEVFEQIQRKNV----VSWNSMIAGYSLKGDSKSCIELFRRMDEE 302
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
G T ++ ++ SR +L + +G + R+R ++ + S L +F
Sbjct: 303 GIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNR--VEADIFVNSSLIDL----YFKC 356
Query: 239 GEFLRDVGLGRKDLGNLL------WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
G ++G N+ WN+++ Y F M +AG PD TF
Sbjct: 357 G----NIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITF 412
Query: 293 NIRAVAFSRMSMF 305
A S++++
Sbjct: 413 TSVLPACSQLAVL 425
>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 511
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 49/246 (19%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A +++E++ +S + + L+ AY R G +E SI++++ + D P+V++ +I
Sbjct: 173 KAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMK-NSPDCQPDVHTYSI 231
Query: 157 ---SC-----FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
SC F K L L +MV+RG ++ T N FI Y + EME+
Sbjct: 232 LIKSCLQVFAFNKAQTL------LSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMES--- 282
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+L + L D G + D+ + N L ++ +
Sbjct: 283 ----------------------------ILVDMLNDDGC-KPDVWTM--NSTLRAFGRSG 311
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+++++++ + + EAG P + TFNI ++ + + + +E+M+ +VTY
Sbjct: 312 QLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSWTIVTYN 371
Query: 329 CVVDAY 334
V+DA+
Sbjct: 372 IVIDAF 377
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 153/382 (40%), Gaps = 55/382 (14%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R+ + YR G L+ LG+ K+ A++L + EG + + AL+ Y
Sbjct: 143 ELLREQLWYRPYAGMY--IKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAY 200
Query: 90 ANNGFVLEAQVVWEELLSSSFVLS-VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ +G + EA + E+ +S V S L+ + ++ FN+ +++ + R
Sbjct: 201 SRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPN 260
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVS-RGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I +GK ME+ L +M++ G D T N+ + + R G L ME Y
Sbjct: 261 TITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCY 320
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--A 265
+ + + GI+ T+ N+LL SY A
Sbjct: 321 EKFQEA-------GIQPSIQTF----------------------------NILLDSYGKA 345
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+++ S E+M+ + + T+NI AF R + M+ E + P V
Sbjct: 346 ESYEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCV 403
Query: 326 TYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVF----EAFGKGDFHSSSEAFL 381
T +V AY +D S +NL ++ + D + +A+G+ + + + L
Sbjct: 404 TLCSLVRAYGQAGKREKID---SVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVL 460
Query: 382 EFKRQR-----KWTYRKLIAVY 398
QR K TYR + Y
Sbjct: 461 GMMEQRGCKPDKTTYRTMARAY 482
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ GR L ++SE + P TLC+L+ Y G + V + +S
Sbjct: 373 VIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSD 432
Query: 110 FVLSVQVLSDLMDAYGRIGCFNE---IISIIDQVSCRNADLLPEVYSRAIS 157
+L + L+DAYGR+ CF E ++ +++Q C+ +RA S
Sbjct: 433 IMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYS 483
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 8/227 (3%)
Query: 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134
L PD T +++ + G V ++V ++ S F + V V+S + Y + F + I
Sbjct: 294 LKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAI 353
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ D++ R+ ++ ISC+ + GQ E +EM GF DS T I
Sbjct: 354 KLFDEMPERDV----ASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSC 409
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
+R L + + L RS +D A+ Y K M E + RK++
Sbjct: 410 ARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI--QRKNV-- 465
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ WN ++ Y+ KS F RM E G P LTT + +A SR
Sbjct: 466 VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR 512
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 102/253 (40%), Gaps = 20/253 (7%)
Query: 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
+P A +L +K G PD+ TL ++ A + + + EL+ S F L V S
Sbjct: 379 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSS 438
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+D YG+ GC + +Q+ +N ++ I+ + +G + + M
Sbjct: 439 ALVDMYGKCGCLEMAKEVFEQIQRKNV----VSWNSMIAGYSLKGDSKSCIELFRRMDEE 494
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
G T ++ ++ SR +L + +G + R+R ++ + S L +F
Sbjct: 495 GIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNR--VEADIFVNSSLIDL----YFKC 548
Query: 239 GEFLRDVGLGRKDLGNLL------WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
G ++G N+ WN+++ Y F M +AG PD TF
Sbjct: 549 G----NIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITF 604
Query: 293 NIRAVAFSRMSMF 305
A S++++
Sbjct: 605 TSVLPACSQLAVL 617
>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
Length = 397
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 25/296 (8%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G+ K+P + ++ N +KS G P+ T AL+ +A G +A+ V+EE+ + V
Sbjct: 93 GKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDV 152
Query: 115 QVLSDLMDAYGRIGC---FNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELME 169
+ LM+AY R G +EI S++ + C P+ Y+ + +G+ G E E
Sbjct: 153 YAYNALMEAYSRAGLPQGASEIFSLMQHMGCE-----PDRASYNILVDAYGRAGLHEDAE 207
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+E+ RG S + + ++R G+ T E +L +S D + A+ Y
Sbjct: 208 AVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAY 267
Query: 230 LK-------ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ ER F + G D+G +N+ + +Y + ++ F ++
Sbjct: 268 ARAGRLDDMERLFAAMER------RGDADVGT--YNVAVNAYGRAGYVGRMEAAFAAVAA 319
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
G D+ T+ R A++R + +E M PD T ++ A D+R
Sbjct: 320 RGLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDER 375
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P A ++ + ++ G PD ++ L+ Y G +A+ V+EEL
Sbjct: 157 ALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQR 216
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLE 166
+++ L+ A+ R G ++ Q+ + L P+ ++ ++ + + G+L+
Sbjct: 217 GMSPTMKSHMLLLAAHARSGNATRCEEVMAQL--HKSGLTPDTFALNAMLNAYARAGRLD 274
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
ME M RG D T N + Y R G + ME
Sbjct: 275 DMERLFAAMERRG-DADVGTYNVAVNAYGRAGYVGRME 311
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 89/246 (36%), Gaps = 38/246 (15%)
Query: 145 ADLLP--EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
A +P + Y+ + + G L E + EM G ++ NA++ + +
Sbjct: 6 AQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEK 65
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
Y R+KR R + E +FT L++
Sbjct: 66 AVEVYQRMKRERCRANTE-----TFT------------------------------LMIN 90
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
Y + S + F M G P++ T+ AF+R + E M+ P
Sbjct: 91 VYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEP 150
Query: 323 DLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFL 381
D+ Y +++AY L + S M ++ P ++ + +A+G+ H +EA
Sbjct: 151 DVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVF 210
Query: 382 EFKRQR 387
E +QR
Sbjct: 211 EELKQR 216
>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
Length = 698
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 123/307 (40%), Gaps = 39/307 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ LG+ + A L+ +K GL P+ L+ Y+ G + + V L +
Sbjct: 287 SLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDT 346
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
++ L+DAY R G + + ++ ++ R+ D+ P +Y+R I+ + GQ +
Sbjct: 347 GMSINKITYCLLIDAYARAGLMDRLEALYQEM--RDCDIRPNTYMYARMITIYRDTGQWQ 404
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L+EM G + D+ N I + R L + A+ +++
Sbjct: 405 KGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQD-------------- 450
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
G DV + WN L+ + + ++ + +M G
Sbjct: 451 ------------GGIEPDV---------VSWNSLIDACCKAGQPLEARKLYYKMVNDGCA 489
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFG 346
P TFNI + D++ +E M+ + + P++VTY +VD Y RL ++
Sbjct: 490 PTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVEC 549
Query: 347 LSKMNLD 353
L M D
Sbjct: 550 LQTMKED 556
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/361 (19%), Positives = 133/361 (36%), Gaps = 66/361 (18%)
Query: 65 QLVNTVKS----EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
Q ++TVK+ G+ + T C L+ YA G + + +++E+ + + + +
Sbjct: 334 QQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARM 393
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSR 178
+ Y G + + + ++ ++ + A + P+ VY+ I+ FG+ QLE +M
Sbjct: 394 ITIYRDTGQWQKGVKLLREM--QQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDG 451
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
G D + N+ I + G E Y ++ + D A +F + L
Sbjct: 452 GIEPDVVSWNSLIDACCKAGQPLEARKLYYKM-----VNDGCAPTAQTFNIV----IHGL 502
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
GE R WN + M G P++ T+
Sbjct: 503 GEHKR-------------WN-------------DVNEMVEEMRSKGMFPNVVTYTTLVDV 536
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY------------LDKRLGRNLDFG 346
+++ +F D L+ MK + +GP Y + +AY L N++
Sbjct: 537 YAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEIN 596
Query: 347 LSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRN 406
L+ +NL + AF + A E+ ++ T K+ L K L R
Sbjct: 597 LAMLNL-----------LINAFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKALIRA 645
Query: 407 Q 407
+
Sbjct: 646 E 646
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/320 (20%), Positives = 130/320 (40%), Gaps = 18/320 (5%)
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160
+++E+ + + +V +DL+ A G+ NE + ++++ + Y + G
Sbjct: 234 LFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLG 293
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K G+ E L+EM G + N + YSR G L +++T L+ + I+K
Sbjct: 294 KHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKI 353
Query: 221 G----IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276
I A + L +R L + +RD + ++ ++ Y + + +
Sbjct: 354 TYCLLIDAYARAGLMDR-LEALYQEMRDCDI---RPNTYMYARMITIYRDTGQWQKGVKL 409
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
M +AG PD +N+ F R ++ M+ + PD+V++ ++DA
Sbjct: 410 LREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACC- 468
Query: 337 KRLGRNLD---FGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKW---- 389
+ G+ L+ +N +P T V G+ + +E R +
Sbjct: 469 -KAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNV 527
Query: 390 -TYRKLIAVYLKKQLRRNQI 408
TY L+ VY + +L ++ +
Sbjct: 528 VTYTTLVDVYAQARLFQDAV 547
>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 658
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/378 (20%), Positives = 151/378 (39%), Gaps = 42/378 (11%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC-ALMLCYANNGFVLEAQVVWEELLS 107
++V R+ + A +L+N ++ G PDN C V V +
Sbjct: 118 AIVGTCAREDRLETALELMNQMRGSGFQPDNVNYTLVFQACAKKRVGVDVISRVCANIEQ 177
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
+ ++ +D+++AY R G ++ + + + DL+P+V YS I +L
Sbjct: 178 EGLEMDTKLYNDVINAYCRAGDPDKAFQYMGLM--QACDLVPDVRSYSSLIETLVVVRRL 235
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSR-------------------------FGSL 200
+ E EM S+ + ++ T NA + Y+R +G L
Sbjct: 236 DDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLL 295
Query: 201 TEMETAYGRLKRSR---HLIDKEGIRAVSFTYLK-------ERKFFMLGEFLRDVGLGRK 250
+ + GRL +++ H + E + A +F Y + R++ L+D+
Sbjct: 296 IDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNI 355
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
++N+L+ +Y ++ R F +M + GF PD+ T+N A R + +
Sbjct: 356 KPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALD 415
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFG 369
L+ M+ P L TY +++A + + L +M P V T + +++G
Sbjct: 416 LLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYG 475
Query: 370 KGD-FHSSSEAFLEFKRQ 386
+ +SE + K Q
Sbjct: 476 TSKRYREASEYLKQMKSQ 493
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
V +LV+ G K+ A + + +KS+GL P S CAL YA G +A V++
Sbjct: 465 VTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKS 524
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQ 162
+ L++ +L+ L++A+G G + E S+ D + + P+V Y+ + K
Sbjct: 525 MEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYI--LEVGMSPDVVTYTTLMKALIKA 582
Query: 163 GQLELMENTLKEMVSRGFSVD 183
QL+ + + ++MV G + D
Sbjct: 583 EQLDQVPDVYEQMVRAGCTPD 603
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 113/287 (39%), Gaps = 35/287 (12%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+E L ++ A +KS+ + TL AL+ Y + + + + ++
Sbjct: 223 SSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAED 282
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ LS L+DAY R G ++ + + N +YSR + + Q +
Sbjct: 283 AGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDG 342
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
LK+M + + N I Y +FG L + + ++ DKEG
Sbjct: 343 TIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQM-------DKEG------ 389
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
F DV + WN L+ ++ + +M E P
Sbjct: 390 -------------FKPDV---------VTWNSLIEAHCRAGLITEALDLLKQMQERECVP 427
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
L T+NI A + + ++ L L+ M+ + + P++VTY +VD+Y
Sbjct: 428 SLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSY 474
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 63/322 (19%), Positives = 123/322 (38%), Gaps = 35/322 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ RK +L+ + GL + L+ Y+ G + +A+ + +
Sbjct: 259 ALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVE 318
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ + + S LM AY ++ I ++ + N +++ I +GK G+L
Sbjct: 319 NVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQA 378
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE----------------------META 206
T +M GF D T N+ I + R G +TE + A
Sbjct: 379 MRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNA 438
Query: 207 YG---RLKRSRHLIDK---EGI--RAVSFT-----YLKERKFFMLGEFLRDVGLGRKDLG 253
G R K L+D+ +G+ V++T Y +++ E+L+ +
Sbjct: 439 LGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPS 498
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
++ L SYA + F M + G +L+ N+ AF + + +
Sbjct: 499 TSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFD 558
Query: 314 HMKHESVGPDLVTYGCVVDAYL 335
++ + PD+VTY ++ A +
Sbjct: 559 YILEVGMSPDVVTYTTLMKALI 580
>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
Length = 845
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 120/288 (41%), Gaps = 15/288 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L + GL P +ST L++ N G + EAQ++ E ++S + LS + +D
Sbjct: 444 ASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTS-FTICLD 502
Query: 123 AY-------GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
AY G + C++++ +I Q D + +S I+ + + EM
Sbjct: 503 AYFRDGNAVGALKCWDDMGNIGLQT-----DFI--AFSAYINGLCRLDCVNEAYQAFAEM 555
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
SRG ++ T N+ I + G++TE +++S + D + +E K
Sbjct: 556 TSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPDIYTSNILIDGLCREGKL 615
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
M+ L D+ + +N ++ +Y M S +M AG PD+ T+NI
Sbjct: 616 KMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIW 675
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNL 343
+ R M L+ + P+ VTY ++D L R +
Sbjct: 676 MHSLCRNHMLNQAGKLLDELVAVDCSPNSVTYNTLMDGICSDVLDRAM 723
>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
Length = 790
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 11/202 (5%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL KI R V +++ LG+ KK H L +K +G PD + L+ +
Sbjct: 487 DLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSF 546
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
G V EA ++EEL +SS + + L++ G+ G +E ++ R L P
Sbjct: 547 GRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEM--REEGLSP 604
Query: 150 EV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
+V YS I CFGK ++E+ EM++ G S + T N + R G E Y
Sbjct: 605 DVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 664
Query: 208 GRLKRSRHLIDKEGIRAVSFTY 229
+LK ++G+ S TY
Sbjct: 665 AKLK-------QQGLTPDSITY 679
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+ L + R +++N +L + K L + +M + G PD+ ++NI +F
Sbjct: 487 DLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSF 546
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD----- 354
R + E +++ S PD++++ +++ LG+N D + M +
Sbjct: 547 GRAGRVEEAVKIFEELENSSCKPDIISFNSLINC-----LGKNGDIDEAHMRFKEMREEG 601
Query: 355 -SPVVSTDPYVFEAFGKGD 372
SP V T + E FGK D
Sbjct: 602 LSPDVVTYSTLIECFGKTD 620
>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 107/269 (39%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+L++ ++S GL D T ++ G + EA+ + L S + + L+ +
Sbjct: 279 ELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVF 338
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
G+ G F+E +S++ ++ N Y+ ++ + + G E + M S+G ++
Sbjct: 339 GKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNA 398
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
T I Y R G + + + ++ + + AV K+ + + L
Sbjct: 399 VTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGH 458
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ L ++ WN +L K + + F M GF PD TFN A+ R
Sbjct: 459 MKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGS 518
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
D E M P + TY +++A
Sbjct: 519 NNDAAKMHEEMIKAGFSPCINTYNALLNA 547
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 113/285 (39%), Gaps = 10/285 (3%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G+K +Q+ +K+ G PD T L+ Y G +A + EE++ + F +
Sbjct: 479 GKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCI 538
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTL 172
+ L++A R G + S+I + RN P YS + + K G ++ +E
Sbjct: 539 NTYNALLNALARRGDWKAAESVI--LDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIE 596
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
K + ++ + SLT ME A+ L++ + D ++ + K
Sbjct: 597 KSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKN 656
Query: 233 RKFFMLGEFLR---DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+ E LR D GL + DL + N L+ YA + + +G PDL
Sbjct: 657 NMYDRAHEMLRLIHDAGL-QPDL--VTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDL 713
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++N F R + + L M VGP + TY + Y
Sbjct: 714 VSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGY 758
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 124/320 (38%), Gaps = 66/320 (20%)
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ--- 164
+VL V+ + ++ AY R G ++ I I ++++ + L P + Y+ + +GK G+
Sbjct: 218 YVLDVRAYTTILHAYSRTGKYHRAIEIFERMN--ESGLSPSLVTYNVMLDVYGKMGRSWD 275
Query: 165 --LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
LEL L EM SRG D T + + R G + E + LK EG
Sbjct: 276 KILEL----LDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLK-------SEGY 324
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ + TY N LL + M E
Sbjct: 325 KPGTVTY----------------------------NALLHVFGKAGIFSEALSVLSEMEE 356
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG-- 340
PD T+N A+ R + + ++ M + + P+ VTY +++AY R+G
Sbjct: 357 NNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAY--GRVGDI 414
Query: 341 -RNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKW--------TY 391
+ L+ M L P V+T V GK S SE ++ K T+
Sbjct: 415 DKALEMFDQMMELGCVPNVATYNAVLGMLGK---KSLSEEMMKILGHMKLNGCSPNHITW 471
Query: 392 RKLIAVYLKKQLRR--NQIF 409
++A+ KK + + NQ+F
Sbjct: 472 NTMLAMCGKKGMHKYVNQVF 491
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 56/133 (42%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
V C S++ + AH+++ + GL PD T +LM YA G +A+ V
Sbjct: 643 LVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLR 702
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
L +S + + ++ + R G E I I+ +++ Y+ IS + QG
Sbjct: 703 MLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQG 762
Query: 164 QLELMENTLKEMV 176
+ + + M+
Sbjct: 763 MFTEINDVISYMI 775
>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Cucumis sativus]
Length = 576
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 94/227 (41%)
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
S+F V V + LMDAYG+ + ++ S ++ + + Y+ + + K G LE
Sbjct: 149 STFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYCKSGLLEK 208
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
E EM G S + NA+I + G+ + + R+KR + +
Sbjct: 209 AEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLIN 268
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y KE K M ++ R + L+ + A + + F +M EAG+ P
Sbjct: 269 VYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEP 328
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D+ +N ++SR + M+H PD +Y +VDAY
Sbjct: 329 DVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 375
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 122/281 (43%), Gaps = 14/281 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ G++ K H+A + + ++++ P+ T AL+ A G +A+ ++E++ +
Sbjct: 266 LINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAG 325
Query: 110 FVLSVQVLSDLMDAYGRIG---CFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
+ V + LM++Y R G EI S++ + C P+ Y+ + +G+ G
Sbjct: 326 YEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCE-----PDRASYNIMVDAYGRAGL 380
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
E + +EM G + + + YS G++ + E G++ +S D + +
Sbjct: 381 HEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNS 440
Query: 225 VSFTYLKERKFFMLGEFLRDV--GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ Y + +F + + + G R D+ +N+L+ Y ++ ++ F +
Sbjct: 441 MLNLYGRLGQFGKMEDLFSTMQKGPCRADIST--YNILINVYGRAGFVERMEELFQLLPA 498
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
PD+ T+ R A+SR ++ E M PD
Sbjct: 499 KNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPD 539
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P+ A ++ + ++ G PD ++ ++ Y G +AQ V+EE+
Sbjct: 335 ALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRI 394
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+++ L+ AY G + II Q+ + L P+ V + ++ +G+ GQ
Sbjct: 395 GITPTMKSHMLLLSAYSSAGNVAKCEDIIGQM--HKSGLKPDTFVMNSMLNLYGRLGQFG 452
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
ME+ M D +T N I Y R G + ME
Sbjct: 453 KMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERME 490
>gi|18417671|ref|NP_567856.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635625|sp|O65567.2|PP342_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30825, chloroplastic; Flags: Precursor
gi|332660415|gb|AEE85815.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 904
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 118/273 (43%), Gaps = 2/273 (0%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-LSSSFVLSVQVLSDLM 121
A +L +KS G++ D ++ Y G + EA V E + V V + D++
Sbjct: 577 AEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDML 636
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
Y + +++ + ++ E+Y+ I+C + L+ + T +EM+ GF+
Sbjct: 637 RIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGFT 696
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
++ T N + Y + ++ + KR ++D + Y K + + +
Sbjct: 697 PNTVTFNVLLDVYGKAKLFKKVNELFLLAKR-HGVVDVISYNTIIAAYGKNKDYTNMSSA 755
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
++++ + +N LL +Y + +M+ + RM ++ PD T+NI +
Sbjct: 756 IKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGE 815
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ L+ +K +GPDL +Y ++ AY
Sbjct: 816 QGWIDEVADVLKELKESGLGPDLCSYNTLIKAY 848
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 4/157 (2%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
+K LA + + + G+ P+ +T+ LM Y N V EA+ + + V
Sbjct: 222 KKGNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCE-S 280
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
S ++ Y R+ +++ +ID + L E + ++ + +QG++EL E+ L M
Sbjct: 281 AYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSM 340
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ GFS + N I Y G + +ME A G R
Sbjct: 341 EAAGFSPNIIAYNTLITGY---GKIFKMEAAQGLFHR 374
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 122/308 (39%), Gaps = 10/308 (3%)
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
+S L ++ Y G + V + + L+ S L+ AY + G ++ + ++
Sbjct: 453 SSILGIILQAYEKVGKIDVVPCVLKGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCLGLLR 512
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+ R++ +Y I + GQL + ++ + I Y+ G
Sbjct: 513 EKKWRDSAFESHLYHLLICSCKESGQLTDAVKIYNHKMESDEEINLHITSTMIDIYTVMG 572
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL-LW 257
+E E Y LK S ++D+ G V Y+K L + + + ++ L+
Sbjct: 573 EFSEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLF 632
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
+L Y LQ + R+ ++G H + +N +R +L + E M
Sbjct: 633 RDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIR 692
Query: 318 ESVGPDLVTYGCVVDAYLDKRLGRNLD--FGLSKMNLDDSPVVSTDPY--VFEAFGKG-D 372
P+ VT+ ++D Y +L + ++ F L+K + VV Y + A+GK D
Sbjct: 693 YGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRH----GVVDVISYNTIIAAYGKNKD 748
Query: 373 FHSSSEAF 380
+ + S A
Sbjct: 749 YTNMSSAI 756
>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 136/322 (42%), Gaps = 17/322 (5%)
Query: 32 ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A K+ R K+ G V C S + L + + A + +++ ++G PD + C L+
Sbjct: 354 AAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLH 413
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
YA+ G + ++ + S+ + V + L+ AY + G ++ + I ++ + +
Sbjct: 414 GYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEM--QQQGV 471
Query: 148 LPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM-E 204
P+V YS IS F + G+L +MV+RG ++A ++ I + G L + E
Sbjct: 472 SPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKE 531
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF---MLGEFLRDVGLGRKDLGNLLWNLLL 261
+ + D +V + K+ + + + D+G + G + +N L+
Sbjct: 532 LVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIG---ERPGVITFNSLI 588
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
Y KM + M G PD+ T+N + + D M+ + V
Sbjct: 589 DGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVK 648
Query: 322 PDLVTYGCVVDAYLDKRLGRNL 343
P+ VTYG ++ R GR +
Sbjct: 649 PNTVTYGIMLAGLF--RAGRTV 668
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 120/291 (41%), Gaps = 22/291 (7%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR K+ A ++ +K GL+P+ T + + +G EA ++ + +
Sbjct: 348 LGRLKE---AAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPD 404
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
+ L+ Y GCF ++I + + + V++ I + K+G ++
Sbjct: 405 IFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFT 464
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK-E 232
EM +G S D T + I +SR G LT+ + ++ GI+ + Y
Sbjct: 465 EMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMV-------ARGIQPNTAVYSSII 517
Query: 233 RKFFMLGEFLR---------DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
+ F M G ++ + G+ R D+ + ++ ++ S + ++ F ++
Sbjct: 518 QGFCMHGGLVKAKELVSEMINKGIPRPDI--VFFSSVINSLCKDGRVMDAHDIFDLATDI 575
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G P + TFN + + L+ M+ V PD+VTY ++D Y
Sbjct: 576 GERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGY 626
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 98/261 (37%), Gaps = 6/261 (2%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD ++ + N G +A ++ E+ V + ++DA + ++ +
Sbjct: 263 PDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELV 322
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ Q++ A YS I + G+L+ +EM RG + T N+F+ +
Sbjct: 323 LRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCK 382
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF-MLGEF--LRDVGLGRKDLG 253
G E + + H D + Y E F M+G F ++ G+
Sbjct: 383 HGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAAN--- 439
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
++ +L+ +YA + F M + G PD+ T++ FSRM D
Sbjct: 440 CHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFN 499
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
M + P+ Y ++ +
Sbjct: 500 QMVARGIQPNTAVYSSIIQGF 520
>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 456
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 49/246 (19%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A +++E++ +S + + L+ AY R G +E SI++++ + D P+V++ +I
Sbjct: 118 KAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMK-NSPDCQPDVHTYSI 176
Query: 157 ---SC-----FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
SC F K L L +MV+RG ++ T N FI Y + EME+
Sbjct: 177 LIKSCLQVFAFNKAQTL------LSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMES--- 227
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+L + L D G + D+ + N L ++ +
Sbjct: 228 ----------------------------ILVDMLNDDGC-KPDVWTM--NSTLRAFGRSG 256
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+++++++ + + EAG P + TFNI ++ + + + +E+M+ +VTY
Sbjct: 257 QLETMEKCYEKFQEAGIQPSIQTFNILLDSYGKAESYEKMSAVMEYMQKYHYSWTIVTYN 316
Query: 329 CVVDAY 334
V+DA+
Sbjct: 317 IVIDAF 322
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 154/382 (40%), Gaps = 55/382 (14%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R+ + YR G L+ LG+ K+ A++L + EG + + AL+ Y
Sbjct: 88 ELLREQLWYRPYAGMY--IKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAY 145
Query: 90 ANNGFVLEAQVVWEELLSSSFVLS-VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ +G + EA + E+ +S V S L+ + ++ FN+ +++ + R
Sbjct: 146 SRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPN 205
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVS-RGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I +GK ME+ L +M++ G D T N+ + + R G L ME Y
Sbjct: 206 TITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCY 265
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--A 265
+ + + GI+ T+ N+LL SY A
Sbjct: 266 EKFQEA-------GIQPSIQTF----------------------------NILLDSYGKA 290
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+++ S E+M+ + + + T+NI AF R + M+ E + P V
Sbjct: 291 ESYEKMSAVMEYMQ--KYHYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCV 348
Query: 326 TYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVF----EAFGKGDFHSSSEAFL 381
T +V AY +D S +NL ++ + D + +A+G+ + + + L
Sbjct: 349 TLCSLVRAYGQAGKREKID---SVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVL 405
Query: 382 EFKRQR-----KWTYRKLIAVY 398
QR K TYR + Y
Sbjct: 406 GMMEQRGCKPDKTTYRTMARAY 427
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ GR L ++SE + P TLC+L+ Y G + V + +S
Sbjct: 318 VIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSD 377
Query: 110 FVLSVQVLSDLMDAYGRIGCFNE---IISIIDQVSCRNADLLPEVYSRAIS 157
+L + L+DAYGR+ CF E ++ +++Q C+ +RA S
Sbjct: 378 IMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYS 428
>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
Length = 668
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 122/303 (40%), Gaps = 31/303 (10%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-L 106
+ L+ R P A +L+ + ++ GL P ++ + AL+ G V EA+ ++ E L
Sbjct: 232 SDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFL 291
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + + L+ Y RIG ++D++S YS + + + G+ E
Sbjct: 292 AGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWE 351
Query: 167 LMENTLKEMVSRGFSVDSATGNAFII-------YYSRFGSLTEMETAYGRLKRSRH--LI 217
LKEM + G S + + + F L EM+ + R R + +I
Sbjct: 352 SARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMI 411
Query: 218 DKEGIRAVSFTYLKERKFFMLGEFL------RDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
D G K+ LG + R+ G+ D+ + WN L+ ++ +
Sbjct: 412 DTFG------------KYNCLGHAMDAFNKMREEGI-EPDV--VTWNTLIDAHCKGGRHD 456
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
F M E+ P TT+NI + + L MK + + P+++TY +V
Sbjct: 457 RAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLV 516
Query: 332 DAY 334
D Y
Sbjct: 517 DVY 519
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 40 KQEGFVDC----ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K++G V +LV+ GR + A + +K++GL P + AL+ YA G
Sbjct: 501 KEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLA 560
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YS 153
A V + + + +S+ VL+ L++A+G E S++ + R L P+V Y+
Sbjct: 561 DHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFM--RENGLRPDVITYT 618
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVD 183
+ + Q + + +EM++ G + D
Sbjct: 619 TLMKALIRVEQFDKVPVIYEEMITSGCAPD 648
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158
+ + E+ V ++ + L+D YGR G + E I I+ + P +Y ++
Sbjct: 494 EAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNA 553
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
+ ++G + N +K M + G V N+ I + FG + A+ L+ R
Sbjct: 554 YAQRGLADHALNVVKAMKADGLEVSILVLNSLI---NAFGEDRRVVEAFSVLQFMR---- 606
Query: 219 KEGIRAVSFTY 229
+ G+R TY
Sbjct: 607 ENGLRPDVITY 617
>gi|224112076|ref|XP_002316075.1| predicted protein [Populus trichocarpa]
gi|222865115|gb|EEF02246.1| predicted protein [Populus trichocarpa]
Length = 434
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/347 (20%), Positives = 142/347 (40%), Gaps = 49/347 (14%)
Query: 13 KFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDC-ASLVEDLGRKKKPHLAHQLVNTVK 71
+F F S ++ +K+ R K + +V+ A + D KK+ A Q+ +K
Sbjct: 19 EFPGFTDASRPRRTAIKNIKKKLDRKSKAKAWVNTVAEALTDCVLKKQWLQAIQVFEMLK 78
Query: 72 SEGLL-PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
+ P +T L++ G A +++E++ + ++ + L+ AY R
Sbjct: 79 EQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTELYTALLAAYCRNNLI 138
Query: 131 NEIISIIDQVS----CRNADLLPEVYSRAI---SCFGKQGQLELMENTLKEMVSRGFSVD 183
+E SII+Q+ C+ P+VY+ + +C + EL++ +EM R S +
Sbjct: 139 DEGFSIINQMKSLPRCQ-----PDVYTYSTLLKACVDA-SRFELIDTLYQEMDERLISPN 192
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
+ T N + Y R G +ME +L E L
Sbjct: 193 TVTQNVVLSGYGRVGMYDQMER-------------------------------VLSEMLE 221
Query: 244 DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
+ D+ + N++L + ++ ++R + + G P+ TFNI A+ +
Sbjct: 222 SAAC-KPDVWTM--NIILSVFGNEGQIDLMERWYEKFRNFGIEPETRTFNILIGAYGKKR 278
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
M+ + +E+M+ TY V++A+ D +N+++ +M
Sbjct: 279 MYDKMSSVMEYMRKVQFPWTTSTYNNVIEAFADVGDAKNMEYAFDQM 325
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 134/348 (38%), Gaps = 97/348 (27%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA--------------- 98
LGR +P AHQL + + EG+ P AL+ Y N + E
Sbjct: 97 LGRCGQPQRAHQLFDEMVEEGIEPTTELYTALLAAYCRNNLIDEGFSIINQMKSLPRCQP 156
Query: 99 -------------------------QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
Q + E L+S + V VLS YGR+G ++++
Sbjct: 157 DVYTYSTLLKACVDASRFELIDTLYQEMDERLISPNTVTQNVVLS----GYGRVGMYDQM 212
Query: 134 ISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
++ ++ +A P+V++ I S FG +GQ++LME ++ + G ++ T N I
Sbjct: 213 ERVLSEM-LESAACKPDVWTMNIILSVFGNEGQIDLMERWYEKFRNFGIEPETRTFNILI 271
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDK-----EGIRAVSFTYLKERKFFMLGEFLRDVG 246
AYG+ + + DK E +R V F + + + E DVG
Sbjct: 272 -------------GAYGK----KRMYDKMSSVMEYMRKVQFPWTTS-TYNNVIEAFADVG 313
Query: 247 LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM----SEAG-FH--------------P 287
D N+ + + MK+ + F + + AG FH P
Sbjct: 314 ----DAKNMEYAFDQMRAES---MKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIP 366
Query: 288 DLTT-FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ T+ FN A ++ ++ + MK + PD TY +V+AY
Sbjct: 367 ENTSFFNAVISACAKADDLMEMERVFKRMKDKQCPPDSRTYSIMVEAY 414
>gi|168016406|ref|XP_001760740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688100|gb|EDQ74479.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 466
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 107/262 (40%), Gaps = 1/262 (0%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
+G LPD ++ + G +A+ ++ E++ ++ + L+ YG+ G F E
Sbjct: 185 DGCLPDKYAYTTMIKGCCDAGLYDQAKKLFNEMMREGVEPTIVTYNTLIFGYGKAGLFAE 244
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
I ++ + ++ I FG ++ ME + ++++G D T N+ I
Sbjct: 245 IEYLLSLMEANGITPDTITWNTLIRVFGLHNRIPEMEQAYEGLLAQGLMADEVTLNSLIG 304
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
Y R G +ME ++R + + + Y K RK + + +
Sbjct: 305 TYGRAGLYGKMECVTDFMRRYSYPMTTVTYNIIIEIYGKARKIEQMDTAFKRMKAQGLKP 364
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+ ++ +L +Y + + +++ MR D +N A R F +
Sbjct: 365 NCITFSSILSAYGKHGEWHKIEK-IMRQVRHYNAADTAVYNAAIDAHRRALDFEAMEKLF 423
Query: 313 EHMKHESVGPDLVTYGCVVDAY 334
E MK E V PD +TY +++AY
Sbjct: 424 EEMKMEGVAPDGITYTTLIEAY 445
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L++ +++ G+ PD T L+ + + + E + +E LL+ + L+ L+ YG
Sbjct: 248 LLSLMEANGITPDTITWNTLIRVFGLHNRIPEMEQAYEGLLAQGLMADEVTLNSLIGTYG 307
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
R G + ++ + D + + + Y+ I +GK ++E M+ K M ++G +
Sbjct: 308 RAGLYGKMECVTDFMRRYSYPMTTVTYNIIIEIYGKARKIEQMDTAFKRMKAQGLKPNCI 367
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
T ++ + Y + G ++E +++ RH
Sbjct: 368 TFSSILSAYGKHGEWHKIEKI---MRQVRH 394
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 120/306 (39%), Gaps = 14/306 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ +K + A++L + S GL P T +L+ + + EA +++ +
Sbjct: 49 LIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKG 108
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISII-DQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F V S ++ + G E + ++ ++ R Y+ I+ K +E
Sbjct: 109 FEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERA 168
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
L+EM S+G+ D+ T N + R G ++E + + + + D +
Sbjct: 169 YKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDA 228
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
KE K + +DV + +N +LL A M + F +M +G P+
Sbjct: 229 LYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPN 288
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348
T++I R D H LE M PD+VTY ++D GL
Sbjct: 289 GATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLD-------------GLC 335
Query: 349 KMNLDD 354
K NL D
Sbjct: 336 KTNLVD 341
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/285 (16%), Positives = 112/285 (39%), Gaps = 35/285 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L + + A++L+ + S+G +PDN T ++ G V EA+ ++ + S
Sbjct: 154 ALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSR 213
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ V + L+DA K+G+ +
Sbjct: 214 GYSPDVVAYNGLLDA-----------------------------------LYKEGKTDEA 238
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
K+++++G+ D+ T N+ ++ +R ++ E E + ++ S + V
Sbjct: 239 MKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSG 298
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
+ + +K + L ++ + +N+LL + F M + G PD
Sbjct: 299 HCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD 358
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ ++++ + + D + + M + PD+VT+ ++D
Sbjct: 359 IVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDG 403
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 8/171 (4%)
Query: 19 VPSHQTHPKNGDLARKIIRYRKQEGFV-DCAS---LVEDLGRKKKPHLAHQLVNTVKSEG 74
V S K D A K++ + G V D + L++ L + AH+L +T+ G
Sbjct: 295 VLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG 354
Query: 75 LLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
PD + ++ LC N V +A+V+++ ++ V V + LMD + G +E
Sbjct: 355 CAPDIVSYSVVLNGLCKTNK--VHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDE 412
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
++DQ++C Y+ ++ KQG+ + + M +GF D
Sbjct: 413 AKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 138/333 (41%), Gaps = 23/333 (6%)
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
H A +L+ +KS G PD T ++ AN G + A + L S +V + L
Sbjct: 7 HAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTAL 63
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ A+ R E + +++++ R Y+ + K + ++ +K+M+ GF
Sbjct: 64 IAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGF 123
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKER 233
+ + T N+ + + + G++ + G ++ +G+R TY K +
Sbjct: 124 APNVMTFNSLVDGFCKRGNVDDARKLLG-------IMVAKGMRPNVVTYSALIDGLCKSQ 176
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
KF E L ++ ++ L+ K++ ++ RM+ +G PD+ ++
Sbjct: 177 KFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYS 236
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLD 353
AF + + +L+ M+ + PD+VTY V+D +LG+ + + +
Sbjct: 237 SIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLC--KLGKIAEAQVILDQMQ 294
Query: 354 DS----PVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+S P V T V K D ++ L+
Sbjct: 295 ESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLD 327
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 119/296 (40%), Gaps = 13/296 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
LV+ L + A +V + G P+ T +L+ + G V +A+ + +++
Sbjct: 98 LVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG 157
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLEL 167
+V S L+D + F E +++++ + + + P+ YS I K ++E
Sbjct: 158 MRPNVVTYSALIDGLCKSQKFLEAKEVLEEM--KASGVTPDAFTYSALIHGLCKADKIEE 215
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
E L+ M G + D ++ I + + G L E + +++ R D V
Sbjct: 216 AEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVID 275
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS-----LQREFMRMSE 282
K K L + ++ G++L +++ S N KS Q+ RM +
Sbjct: 276 GLCKLGKIAEAQVILDQM----QESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCK 331
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
AG +PD+ T+ + + L+ MK P++VTY ++ R
Sbjct: 332 AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKAR 387
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 5/171 (2%)
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G L L+EM S GF+ D+ T I + G L + +++ +
Sbjct: 4 GDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTAL 63
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMS 281
A K + L E +R+ G NL+ +N+L+ + + + Q +M
Sbjct: 64 IAAFARAKKLEEAMKLLEEMRERGCPP----NLVTYNVLVDALCKLSMVGAAQDVVKKMI 119
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
E GF P++ TFN F + D L M + + P++VTY ++D
Sbjct: 120 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALID 170
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 167/390 (42%), Gaps = 45/390 (11%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
T+++ +HG KF + K ++ + ++ + L+E R+
Sbjct: 370 TYNVLIHGLCKFGKME--------KAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGR 421
Query: 63 AHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
A +L++ ++ L+P + A++ LC+ + + A + E++ S +V V S L
Sbjct: 422 ALELLDEMEKRNLVPSAVSYGAMINGLCHCKD--LSLANKLLEKMTFSGLKPNVVVYSIL 479
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSR 178
+ AY G E ++D +SC + + P++ Y+ ISC K G++E L E+ R
Sbjct: 480 IMAYASEGRIEEARRLLDGMSC--SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGR 537
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
G D+ T AFI+ YS+ G +TE + + L+ + V F
Sbjct: 538 GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM-LDHGLMPNNPLYTVLIN-----GHFKA 591
Query: 239 GEFLRDVGLGRK--DLGNL----LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
G + + + R+ LG L + + N +++ + F + E G PD+ T+
Sbjct: 592 GNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTY 651
Query: 293 NIRAVAFSR---MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL---DKRLGRNLDFG 346
+ F + + ++LH + M + + P++ Y +VD D + R L G
Sbjct: 652 SSLISGFCKQGEVEKAFELH---DEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 708
Query: 347 LSKMNLD-DSPVVST--DPY-----VFEAF 368
+ + L+ DS ST D Y V EAF
Sbjct: 709 MPEKGLEPDSVTYSTMIDGYCKSENVAEAF 738
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 124/281 (44%), Gaps = 18/281 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
A +L ++ +GL+P+ T + LC A + EA++ +EE+ + S L
Sbjct: 282 AVELKRSMGEKGLVPNTYTYTIITAGLCRAKR--MNEAKLTFEEMQKTGLKPDYNACSAL 339
Query: 121 MDAYGRIGCFNEIISIID-QVSCR-NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
+D + R G +E++ I D VSC +L+ Y+ I K G++E LK MV+
Sbjct: 340 IDGFMREGDIDEVLRIKDVMVSCGIPINLI--TYNVLIHGLCKFGKMEKAAEILKGMVTL 397
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE-----R 233
G +S T I Y R ++ +++ R+L+ AVS+ + +
Sbjct: 398 GCKPNSRTFCLLIEGYCREHNMGRALELLDEMEK-RNLVPS----AVSYGAMINGLCHCK 452
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+ + L + +++++L+++YA +++ +R MS +G PD+ +N
Sbjct: 453 DLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYN 512
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
S+ + L ++ + PD VT+G + Y
Sbjct: 513 AIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGY 553
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 137/330 (41%), Gaps = 18/330 (5%)
Query: 27 KNGDL--ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K+GD+ ARK+ ++G V +++++ + + A L + + S+G+ P +
Sbjct: 695 KSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSF 754
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
AL+ G + +A ++ E+L F ++ + L+D Y + E + ++
Sbjct: 755 VYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEM 813
Query: 141 SCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+ ++P+ Y+ I K G++E KEM R VD+ T + + Y++ G
Sbjct: 814 IAKQ--IMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLG 871
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF-LRDVGLGRKDLG-NLL 256
+E+ + ++ D+ V + + KE ++ F LRD +G+ L +
Sbjct: 872 QSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDN--LVEAFKLRDEVVGKGMLTKGTI 929
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+LL+ + + + M E G P L N +F + E +K
Sbjct: 930 HDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVK 989
Query: 317 HESVGPDLVTYGCVVDAYL---DKRLGRNL 343
+ PD T +V+ L D RNL
Sbjct: 990 SLGLVPDTTTLIDLVNGNLNDTDSEDARNL 1019
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/321 (19%), Positives = 128/321 (39%), Gaps = 17/321 (5%)
Query: 25 HPKNGDLARKIIRYRKQEGF------VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD 78
H K G+L + +R+ C++ + L + + A ++ + +K +GL+PD
Sbjct: 588 HFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPD 647
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
T +L+ + G V +A + +E+ ++ + + L+D + G + D
Sbjct: 648 VFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFD 707
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+ + + YS I + K + + EM S+G S NA + + G
Sbjct: 708 GMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEG 767
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFT-----YLKERKFFMLGEFLRDVGLGRKDLG 253
+ME A + R ++ K +SF Y K K + +++ +
Sbjct: 768 ---DMEKA---MNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPD 821
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
++ + ++ + KM+ F M E D T+ ++++ ++ E
Sbjct: 822 HVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFE 881
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
M + V PD VTYG V+ A+
Sbjct: 882 KMVAKGVKPDEVTYGLVIYAH 902
>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
Length = 668
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 120/300 (40%), Gaps = 25/300 (8%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-L 106
+ L+ R P A +L+ + ++ GL P ++ + AL+ + G V EA+ ++ E L
Sbjct: 232 SDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGSAGRVAEAEALFLEFFL 291
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + + L+ Y RIG ++D++S YS + + + G+ E
Sbjct: 292 AGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWE 351
Query: 167 LMENTLKEMVSRGFSVDSATGNAFII-------YYSRFGSLTEMETAYGRLKRSRH--LI 217
LKEM + G S + + + F L EM+ + R R + +I
Sbjct: 352 SARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMI 411
Query: 218 DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD---LGNLLWNLLLLSYAGNFKMKSLQ 274
D G K+ LG + R++ + WN L+ ++ +
Sbjct: 412 DTFG------------KYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAM 459
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F M E+ P TT+NI + + L MK + + P+++TY +VD Y
Sbjct: 460 ELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVY 519
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 40 KQEGFVDC----ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K++G V +LV+ GR + A + +K++GL P + AL+ YA G
Sbjct: 501 KEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLA 560
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YS 153
A V + + + +S+ VL+ L++A+G E S++ + + L P+V Y+
Sbjct: 561 DHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFM--KENGLRPDVITYT 618
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVD 183
+ + Q + + +EM++ G + D
Sbjct: 619 TLMKALIRVEQFDKVPVIYEEMITSGCAPD 648
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158
+ + E+ V ++ + L+D YGR G + E I I+ + P +Y ++
Sbjct: 494 EAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNA 553
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
+ ++G + N +K M + G V N+ I + FG + A+ L+ +
Sbjct: 554 YAQRGLADHALNVVKAMKADGLEVSILVLNSLI---NAFGEDRRVVEAFSVLQ----FMK 606
Query: 219 KEGIRAVSFTY 229
+ G+R TY
Sbjct: 607 ENGLRPDVITY 617
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 107/262 (40%), Gaps = 1/262 (0%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL P T ALM A G + + V +E+ + LS + L+ +Y G F ++
Sbjct: 524 GLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQL 583
Query: 134 ISIIDQVSCRNADLLPEVYSRA-ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
ID++ L + + + + K G + L ++ G S D NA I
Sbjct: 584 RKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMIS 643
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
++ G + +++++ D + Y +E ++ E + ++ K
Sbjct: 644 MCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAP 703
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+ +N LL SY + +M R F M A PD TFN ++S + ++ + +
Sbjct: 704 NLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVI 763
Query: 313 EHMKHESVGPDLVTYGCVVDAY 334
E+M P +T+ ++D Y
Sbjct: 764 EYMTEHGCQPTQITFKALLDGY 785
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 119/308 (38%), Gaps = 36/308 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L ++ S+GL PD T C L+ + +A + E+ ++ ++ + L+D
Sbjct: 373 AAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILID 432
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
YGR+ ++++ + + +N ++ + FG G L + N +EM G+
Sbjct: 433 IYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMP 492
Query: 183 DSATGNAFIIYYSR-------------------------FGSLTEMETAYGRLKRSRHL- 216
T N I Y R F +L GR ++ +
Sbjct: 493 GVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVS 552
Query: 217 --IDKEGIR-------AVSFTYLKERKFFMLGEFLRDV-GLGRKDLGNLLWNLLLLSYAG 266
+ + G++ + +Y +FF L +++ ++ ++ L +L +L+Y
Sbjct: 553 QEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCK 612
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
Q ++ + G PD+ FN ++ LE ++ + PD VT
Sbjct: 613 CGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVT 672
Query: 327 YGCVVDAY 334
Y C++ Y
Sbjct: 673 YNCLMSMY 680
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ +++ G+ P+ T L+ YA G EA + + LLS L+
Sbjct: 338 ASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLIS 397
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
A+ R + + + ++ R + P + Y+ I +G+ +L+ M K M +
Sbjct: 398 AFNRAERYEKALETFTEM--RKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNC 455
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
+ D T N+ + + G LTE+ + +KR+ ++
Sbjct: 456 TPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYM 491
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 52/273 (19%), Positives = 101/273 (36%), Gaps = 39/273 (14%)
Query: 64 HQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123
L +K + PD+ T ++ N EA +++E+ + + + L+D
Sbjct: 269 QSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDV 328
Query: 124 YGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFS 181
YG+ G E ++ V A + P + Y+ I+ + + G + K ++S+G
Sbjct: 329 YGKGGMHKEASELL--VEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLC 386
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
D T I +A+ R +R ++ T+ + RK
Sbjct: 387 PDEFTYCTLI-------------SAFNRAERYEKALE---------TFTEMRKTNCTPNI 424
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ +N+L+ Y K+ + + F M E PDL T+N +F
Sbjct: 425 V-------------TYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGN 471
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M ++ MK P + T+ +++ Y
Sbjct: 472 CGMLTEVSNVFREMKRAGYMPGVDTFNILIECY 504
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 102/245 (41%), Gaps = 25/245 (10%)
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI-SCFGKQ 162
E ++ VL+ L + A GR G + + + + + + + L V + +I S G
Sbjct: 131 EFIAGELVLTDSELVYFVKALGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNH 190
Query: 163 GQL----ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH--- 215
QL EL E +LK+ +S+D + I SR E T + ++R
Sbjct: 191 EQLPAALELFE-SLKQ--DESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGN 247
Query: 216 ------LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
++D G R S+ ++ L + ++D+ + D +N ++ + N
Sbjct: 248 AVTYNVMLDLYGKRGDSWDRIQS-----LFQEMKDLEISPDDY---TYNTMITACIQNSH 299
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ R F M EAG P+ T+N + + M + L M+ + P++VTY
Sbjct: 300 CQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNE 359
Query: 330 VVDAY 334
++ AY
Sbjct: 360 LIAAY 364
>gi|242047208|ref|XP_002461350.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
gi|241924727|gb|EER97871.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
Length = 560
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 131/339 (38%), Gaps = 49/339 (14%)
Query: 38 YRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLE 97
Y +EG L+ LGR +P AHQL + + +G P AL+ Y +G + +
Sbjct: 202 YHPKEGTF--MKLIVLLGRSGQPARAHQLFDEMLQQGCQPTPGLYTALIGAYCRSGLLDD 259
Query: 98 AQVVWEELLSSSFVLS-VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
A + ++ S V S ++ A F+ I + ++ R+ + P ++ I
Sbjct: 260 ALQLLNDMKGSPLCQPDVYTYSTIIKACVDATRFDLIDVMYKDMAERS--IAPNTVTQNI 317
Query: 157 --SCFGKQGQLELMENTLKEMV-SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
S +GK G+L+ ME L +M+ S D T N + + G + ME Y + +
Sbjct: 318 VLSGYGKAGRLDDMEKVLSDMLDSTACKPDVWTMNIILSLFGNKGQVELMEKWYEKFRSY 377
Query: 214 RHLIDKEGIRAVSFTYLKER---KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ + + Y K+R K + E++R + +N ++ ++A
Sbjct: 378 GIEPETRTLNILIGAYGKKRMYDKMSAVMEYMRKLAF---PWTTATYNNVIEAFAEAGDA 434
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF------------------------- 305
K+++ F +M G PD TF FS+ F
Sbjct: 435 KNMEHTFNQMRSEGMKPDTKTFCCLINGFSKAGQFHKVVGMVKLAERLDVPANTSFHNAI 494
Query: 306 ----------WDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ HMKH PD VTY +V+AY
Sbjct: 495 LGACARADDLMEMERVFRHMKHTQCDPDAVTYSILVEAY 533
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/303 (18%), Positives = 123/303 (40%), Gaps = 41/303 (13%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P T L++ +G A +++E+L + + + L+ AY R G ++ + +
Sbjct: 204 PKEGTFMKLIVLLGRSGQPARAHQLFDEMLQQGCQPTPGLYTALIGAYCRSGLLDDALQL 263
Query: 137 IDQVSCRNADLL-PEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
++ + + + L P+VY S I + +L++ K+M R + ++ T N +
Sbjct: 264 LNDM--KGSPLCQPDVYTYSTIIKACVDATRFDLIDVMYKDMAERSIAPNTVTQNIVLSG 321
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
Y + G L +ME K ++D + +T
Sbjct: 322 YGKAGRLDDME------KVLSDMLDSTACKPDVWTM------------------------ 351
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
N++L + +++ +++ + + G P+ T NI A+ + M+ + +E
Sbjct: 352 ----NIILSLFGNKGQVELMEKWYEKFRSYGIEPETRTLNILIGAYGKKRMYDKMSAVME 407
Query: 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGK-G 371
+M+ + TY V++A+ + +N++ ++M + P T + F K G
Sbjct: 408 YMRKLAFPWTTATYNNVIEAFAEAGDAKNMEHTFNQMRSEGMKPDTKTFCCLINGFSKAG 467
Query: 372 DFH 374
FH
Sbjct: 468 QFH 470
>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
[Vitis vinifera]
Length = 990
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 11/202 (5%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL KI R V +++ LG+ KK H L +K +G PD + L+ +
Sbjct: 270 DLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSF 329
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
G V EA ++EEL +SS + + L++ G+ G +E ++ R L P
Sbjct: 330 GRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEM--REEGLSP 387
Query: 150 EV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
+V YS I CFGK ++E+ EM++ G S + T N + R G E Y
Sbjct: 388 DVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 447
Query: 208 GRLKRSRHLIDKEGIRAVSFTY 229
+LK ++G+ S TY
Sbjct: 448 AKLK-------QQGLTPDSITY 462
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 57/329 (17%), Positives = 132/329 (40%), Gaps = 14/329 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + K + + +K + PD T ++ G E+ +++E+
Sbjct: 83 LLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKG 142
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ ++ + ++ A ++ I + ++ N +S ++ +GQL ++
Sbjct: 143 YTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLD 202
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
++ VS F ++ + + S+ G +E + + D++ ++ +
Sbjct: 203 EVVE--VSNKF-MNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESL 259
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K + L + R +++N +L + K L + +M + G PD+
Sbjct: 260 CDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDI 319
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
++NI +F R + E +++ S PD++++ +++ LG+N D +
Sbjct: 320 FSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINC-----LGKNGDIDEAH 374
Query: 350 MNLDD------SPVVSTDPYVFEAFGKGD 372
M + SP V T + E FGK D
Sbjct: 375 MRFKEMREEGLSPDVVTYSTLIECFGKTD 403
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 116/301 (38%), Gaps = 49/301 (16%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P+ T +L+ A G EAQ+++EEL ++ + V S L+++ GR G + + +
Sbjct: 7 PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ ++ + Y+ + C GK GQ + L EM G D T N I +
Sbjct: 67 VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-----------LKERKFFMLGEFLR-- 243
G L+E T + ++ + D +FTY ++ +L E R
Sbjct: 127 AGRLSEAFTLFAEMRERGCVPD-------TFTYNSLIYGLGKVGRSQKAMELLEEMERHG 179
Query: 244 ---DV--------GLGR------------------KDLGNLLWNLLLLSYAGNFKMKSLQ 274
DV GLG+ + ++ + L+ + ++
Sbjct: 180 CPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDAL 239
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M E G P + T+N F ++ + + L+ MK PD+VTY C++
Sbjct: 240 ELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGL 299
Query: 335 L 335
+
Sbjct: 300 I 300
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 121/290 (41%), Gaps = 8/290 (2%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+ L+ L + + A Q++ ++ EG PD T L+ G + +A +++ + S
Sbjct: 293 SCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKS 352
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
V S L+ A G+ + +++ + + P++ Y I+ GK GQ+
Sbjct: 353 KGCNPDVVTYSTLITALGKAARVESACVLFEEM--ESVGIQPDLFTYCSIITVLGKAGQV 410
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ + EM +G S D T NAF+ R G E + +K S L D A+
Sbjct: 411 DDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDAL 470
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN--LLLLSYAGNFKMKSLQREFMRMSEA 283
K ++ L+++ +L ++ L +L+ GN +F +
Sbjct: 471 LLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQF--ANSK 528
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
G P +++N A ++ + +LE +K + PD+V+Y ++ A
Sbjct: 529 GLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISA 578
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
AH+L+ S+GL P S+ AL+ A G V EA E+L + S L+
Sbjct: 518 AHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLIS 577
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
A G+ G + +++++S R L P YS +
Sbjct: 578 ALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLV 611
>gi|2980784|emb|CAA18211.1| puative protein [Arabidopsis thaliana]
gi|7269983|emb|CAB79800.1| puative protein [Arabidopsis thaliana]
Length = 1075
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 118/273 (43%), Gaps = 2/273 (0%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-LSSSFVLSVQVLSDLM 121
A +L +KS G++ D ++ Y G + EA V E + V V + D++
Sbjct: 748 AEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDML 807
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
Y + +++ + ++ E+Y+ I+C + L+ + T +EM+ GF+
Sbjct: 808 RIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGFT 867
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
++ T N + Y + ++ + KR ++D + Y K + + +
Sbjct: 868 PNTVTFNVLLDVYGKAKLFKKVNELFLLAKR-HGVVDVISYNTIIAAYGKNKDYTNMSSA 926
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
++++ + +N LL +Y + +M+ + RM ++ PD T+NI +
Sbjct: 927 IKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGE 986
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ L+ +K +GPDL +Y ++ AY
Sbjct: 987 QGWIDEVADVLKELKESGLGPDLCSYNTLIKAY 1019
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 4/157 (2%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
+K LA + + + G+ P+ +T+ LM Y N V EA+ + + V
Sbjct: 393 KKGNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCE-S 451
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
S ++ Y R+ +++ +ID + L E + ++ + +QG++EL E+ L M
Sbjct: 452 AYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSM 511
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ GFS + N I Y G + +ME A G R
Sbjct: 512 EAAGFSPNIIAYNTLITGY---GKIFKMEAAQGLFHR 545
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 122/308 (39%), Gaps = 10/308 (3%)
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
+S L ++ Y G + V + + L+ S L+ AY + G ++ + ++
Sbjct: 624 SSILGIILQAYEKVGKIDVVPCVLKGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCLGLLR 683
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+ R++ +Y I + GQL + ++ + I Y+ G
Sbjct: 684 EKKWRDSAFESHLYHLLICSCKESGQLTDAVKIYNHKMESDEEINLHITSTMIDIYTVMG 743
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL-LW 257
+E E Y LK S ++D+ G V Y+K L + + + ++ L+
Sbjct: 744 EFSEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLF 803
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
+L Y LQ + R+ ++G H + +N +R +L + E M
Sbjct: 804 RDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIR 863
Query: 318 ESVGPDLVTYGCVVDAYLDKRLGRNLD--FGLSKMNLDDSPVVSTDPY--VFEAFGKG-D 372
P+ VT+ ++D Y +L + ++ F L+K + VV Y + A+GK D
Sbjct: 864 YGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRH----GVVDVISYNTIIAAYGKNKD 919
Query: 373 FHSSSEAF 380
+ + S A
Sbjct: 920 YTNMSSAI 927
>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
Length = 597
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 124/300 (41%), Gaps = 18/300 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ G+ +P + ++ +KS G P+ T AL+ +A G +A+ V+EE+ +
Sbjct: 283 MINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAG 342
Query: 110 FVLSVQVLSDLMDAYGRIGC---FNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
V + LM+AY R G +EI S+++ + C P+ Y+ + FG+ G
Sbjct: 343 HEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCE-----PDRASYNILVDAFGRAGL 397
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ E +E+ +G + + ++R G++ E +L +S D + A
Sbjct: 398 HQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNA 457
Query: 225 VSFTYLKE------RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
+ Y + + F E G D +N+++ +Y + ++ F
Sbjct: 458 MLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTST--YNVMVNAYGRAGYLDRMEAAFR 515
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
++ G D+ T+ R A++R + E M PD T ++ A D+R
Sbjct: 516 SLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSDER 575
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 104/259 (40%), Gaps = 45/259 (17%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P A ++ + ++ G PD ++ L+ + G EA+ ++EL
Sbjct: 352 ALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQ 411
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLE 166
+++ L+ A+ R G ++ Q+ + L P+ ++ ++ +G+ G+L+
Sbjct: 412 GMRPTMKSHMLLLSAHARSGNVARCEEVMAQL--HKSGLRPDTFALNAMLNAYGRAGRLD 469
Query: 167 LMENTLKEMVSRG-----FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
ME M RG + D++T N + Y R G L ME A+ L G
Sbjct: 470 DMERLFAAM-ERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSLA-------ARG 521
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ A T+ +G + R +K+ G L R F M
Sbjct: 522 LAADVVTWTSR-----IGAYAR-----KKEYGQCL------------------RVFEEMV 553
Query: 282 EAGFHPDLTTFNIRAVAFS 300
+AG +PD T + A S
Sbjct: 554 DAGCYPDAGTAKVLLAACS 572
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/285 (16%), Positives = 104/285 (36%), Gaps = 35/285 (12%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ G+K++ A + +P T L+ Y +G + A+ V E+ +
Sbjct: 178 LIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNG 237
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ V + +D + C + + + ++ E Y+ I+ +GK Q
Sbjct: 238 IPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSL 297
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+EM S G + T A + ++R G + E + ++++ H D
Sbjct: 298 RVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDV---------- 347
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+N L+ +Y+ + F M G PD
Sbjct: 348 -------------------------YAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 382
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++NI AF R + + + + +K + + P + ++ ++ A+
Sbjct: 383 ASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAH 427
>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
Length = 384
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A QL +KS+G++P+ T A++ Y +G EA +W+E++ + + + S L++
Sbjct: 247 ATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIE 306
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+YG G + E ++ + R + ++P+ +Y+ + +GK G+ E EM GF
Sbjct: 307 SYGHHGMYQEALACFQDM--RKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGF 364
Query: 181 SVDSATGNAFIIYYSRFGSL 200
D T + ++ G L
Sbjct: 365 VPDGITYGILVRAFANAGRL 384
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 134/327 (40%), Gaps = 49/327 (14%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
LV L + A ++++ +K + + + T L+ YAN G + + + +++E+
Sbjct: 59 LVNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKG 118
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+ YGR G F E + + D++ Y+ AI+ +GK+G LE ME
Sbjct: 119 ESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDME 178
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L EM ++G D T N + Y++ ++ + + + + G R +TY
Sbjct: 179 RLLDEMDTKGVPPDQVTYNTLLDVYAK-------KSYFVKAHEILREMTEAGYRPNIWTY 231
Query: 230 -------LKERKF---FMLGEFLRDVGL--------------GRKDL---GNLLWNLLL- 261
KE+ L E L+ G+ GR L LW+ ++
Sbjct: 232 NIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIE 291
Query: 262 -------LSYAG---NFKMKSLQRE----FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
++Y+G ++ + +E F M ++G PD + A+ + +
Sbjct: 292 AGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCRE 351
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAY 334
L M E PD +TYG +V A+
Sbjct: 352 AELLYFEMTKEGFVPDGITYGILVRAF 378
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 106/281 (37%), Gaps = 35/281 (12%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
L +K K A +L+ +K G PD L+ N+G + A+ + +++ +
Sbjct: 28 LRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKRDKVSAN 87
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
+ ++L+ Y G + + ++ + Y+ I +G++G +
Sbjct: 88 LVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYD 147
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
EM G + D T N I Y + G L +ME R +D +G+ TY
Sbjct: 148 EMDGVGCAKDVHTYNIAIAMYGKRGLLEDME-------RLLDEMDTKGVPPDQVTY---- 196
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
N LL YA M+EAG+ P++ T+N
Sbjct: 197 ------------------------NTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYN 232
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
I + + + E++K + V P++VTY ++ Y
Sbjct: 233 IMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLY 273
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+N L+ Y K + M G D+ T+NI + + + D+ L+ M
Sbjct: 126 YNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMD 185
Query: 317 HESVGPDLVTYGCVVDAYLDK 337
+ V PD VTY ++D Y K
Sbjct: 186 TKGVPPDQVTYNTLLDVYAKK 206
>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
Length = 500
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 6/233 (2%)
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQ 162
LL SSF V + L+DA+G+ + E S Q+ A +P + Y+ I +
Sbjct: 153 LLRSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQL--LEARCIPNEDTYALLIKAYCLS 210
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G LE E EM + G + N++I + G+ + E + R+KR E
Sbjct: 211 GLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETY 270
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMS 281
+ Y K+ K FM + ++ L K N+ + L+ ++A + + F +M
Sbjct: 271 TMLINLYGKDGKSFMALKVFNEM-LSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQ 329
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
EAG PD+ ++N A+SR + M+H PD +Y +VDAY
Sbjct: 330 EAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAY 382
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 35/190 (18%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ G+ K +A ++ N + S P+ T AL+ +A G +A+ V+E++ +
Sbjct: 273 LINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAG 332
Query: 110 FVLSVQVLSDLMDAYGRIG---CFNEIISIIDQVSCR----NADLLPEVYSRA------- 155
V + LM+AY R G EI S++ + C + ++L + Y RA
Sbjct: 333 LEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAE 392
Query: 156 ---------------------ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+S F K G + E+ L +M G +D+ N+ + Y
Sbjct: 393 AVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLY 452
Query: 195 SRFGSLTEME 204
R G +ME
Sbjct: 453 GRLGQFGKME 462
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 75/156 (48%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P+ A ++ + ++ G PD ++ L+ Y GF+ +A+ V+E++
Sbjct: 342 ALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRV 401
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+++ L+ A+ + G ++ I++Q+ L V + ++ +G+ GQ M
Sbjct: 402 GITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKM 461
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
E L M + D +T N I Y + G + +ME
Sbjct: 462 EEVLTVMENGSCEADISTYNILINRYGQAGFIDKME 497
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 100/263 (38%), Gaps = 43/263 (16%)
Query: 76 LPDNSTLCALMLCYANNGFVLEAQVVWEEL----LSSSFVLSVQVLSDLMDAYGRIGCFN 131
+P+ T L+ Y +G + +A+ V+ E+ L SS V+ ++ LM G
Sbjct: 194 IPNEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKG-GNPNKAE 252
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
EI + + C+ + E Y+ I+ +GK G+ + EM+S + T A +
Sbjct: 253 EIFLRMKRDGCKPS---TETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALV 309
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
++R G + E + +++ + G+ ++Y
Sbjct: 310 NAFAREGLCEKAEEVFEQMQEA-------GLEPDVYSY---------------------- 340
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
N L+ +Y+ F M G PD ++NI A+ R D
Sbjct: 341 ------NALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAV 394
Query: 312 LEHMKHESVGPDLVTYGCVVDAY 334
E MK + P + ++ ++ A+
Sbjct: 395 FEDMKRVGITPTMKSHMVLLSAF 417
>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 116/274 (42%), Gaps = 10/274 (3%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G+ K +++ +L ++S P+ T AL+ +A G +A+ ++E+L V
Sbjct: 297 GKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDV 356
Query: 115 QVLSDLMDAYGRIG---CFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELME 169
V + LM++Y R G EI S++ + C P+ Y+ + +G+ G E
Sbjct: 357 YVYNALMESYSRAGYPYGAAEIFSLMQHMGCE-----PDRASYNIMVDAYGRAGLHSDAE 411
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+EM G + + + YS+ +T+ E + + D + ++ Y
Sbjct: 412 AVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLY 471
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+ +F + + L ++ G +N+L+ Y ++ ++ F+ + E F PD+
Sbjct: 472 GRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDV 531
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
T+ R A+SR ++ E M PD
Sbjct: 532 VTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPD 565
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 5/283 (1%)
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
L SSF V + L+DAYG+ + E S+ Q+ + Y+ I + G
Sbjct: 168 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 227
Query: 165 LELMENTLKEMVSRGFS---VDSATGNAFII-YYSRFGSLTEMETAYGRLKRSRHLIDKE 220
+E E L EM + S + NA+I R G+ E + R+KR R E
Sbjct: 228 IERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTE 287
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
+ Y K K +M + ++ + + L+ ++A + + F ++
Sbjct: 288 TYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQL 347
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
E G PD+ +N ++SR + M+H PD +Y +VDAY L
Sbjct: 348 QEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 407
Query: 341 RNLDFGLSKMN-LDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+ + +M L +P + + + A+ K + EA ++
Sbjct: 408 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVK 450
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 76/163 (46%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P+ A ++ + ++ G PD ++ ++ Y G +A+ V+EE+
Sbjct: 361 ALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL 420
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+++ L+ AY + + +I+ ++S + V + ++ +G+ GQ M
Sbjct: 421 GIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKM 480
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
E L EM + + D +T N I Y + G L +E + LK
Sbjct: 481 EKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELK 523
>gi|297820044|ref|XP_002877905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323743|gb|EFH54164.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 439
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 145/362 (40%), Gaps = 72/362 (19%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-SSFVL 112
LG K+P A L + SEGL P +L+ Y + + +A E + S S
Sbjct: 104 LGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLIAVYGKSELLDKAFSTLEYMKSVSDCKP 163
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
V + L+ ++G F+ + II ++S Y+ I +GK G E MEN L
Sbjct: 164 DVFTFTVLIRCCCKLGRFDLVKRIILEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMENVL 223
Query: 173 KEMVSRG------FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+M+ G F+++S G++ ++ + G L ++ T
Sbjct: 224 ADMIEDGDSLPDVFTLNSIIGSSEMVAHEEDGELPDITT--------------------- 262
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--AGNFKMKSLQREFMRMSEAG 284
+N+L+LS+ AG +K S +FM +
Sbjct: 263 ------------------------------FNILILSFGKAGMYKKMSSVMDFME--KRF 290
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
F T+NI F + + MK++ V P+ ++Y +V+AY L +D
Sbjct: 291 FSLTTVTYNIVIETFGKAGKIEKMDDVFRKMKYQGVKPNSISYCSLVNAYSKAGLVGKID 350
Query: 345 FGLSKMNLDDSPVVSTDPY---VFEAFGK-GDFHSSSEAFLEFKRQR----KWTYRKLIA 396
L + + +S VV P+ + A+G+ GD + E +++ + ++ K T+ +I
Sbjct: 351 SILRQ--IVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIK 408
Query: 397 VY 398
Y
Sbjct: 409 TY 410
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 64/134 (47%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++E G+ K + +K +G+ P++ + C+L+ Y+ G V + + ++++S
Sbjct: 301 VIETFGKAGKIEKMDDVFRKMKYQGVKPNSISYCSLVNAYSKAGLVGKIDSILRQIVNSD 360
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
VL + +++AYG+ G + + Q+ R ++ I + G + ++
Sbjct: 361 VVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYKAHGIFDAVQ 420
Query: 170 NTLKEMVSRGFSVD 183
K+M+S G ++D
Sbjct: 421 ELEKQMISTGENLD 434
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 100/222 (45%), Gaps = 30/222 (13%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCAS-----LVEDLGRK 57
TF++ + K RF DL ++II G V C++ +++ G+
Sbjct: 167 TFTVLIRCCCKLGRF------------DLVKRIILEMSYLG-VGCSTVTYNTIIDGYGKA 213
Query: 58 KK-PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQV 116
+ + L + ++ LPD TL N + +++V E + +
Sbjct: 214 GMFEEMENVLADMIEDGDSLPDVFTL---------NSIIGSSEMVAHE--EDGELPDITT 262
Query: 117 LSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMV 176
+ L+ ++G+ G + ++ S++D + R L Y+ I FGK G++E M++ ++M
Sbjct: 263 FNILILSFGKAGMYKKMSSVMDFMEKRFFSLTTVTYNIVIETFGKAGKIEKMDDVFRKMK 322
Query: 177 SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
+G +S + + + YS+ G + ++++ ++ S ++D
Sbjct: 323 YQGVKPNSISYCSLVNAYSKAGLVGKIDSILRQIVNSDVVLD 364
>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 16/277 (5%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G+ + ++A +L N ++S+ P+ T AL+ +A G +A+ ++E+L V
Sbjct: 264 GKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDV 323
Query: 115 QVLSDLMDAYGRIG---CFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELME 169
+ LM+AY R G EI S++ + C P+ Y+ + +G+ G E +
Sbjct: 324 YAYNALMEAYSRAGFPYGAAEIFSLMQHMGCE-----PDRASYNIMVDAYGRGGLHEDAQ 378
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+EM G + + + YS+ G + + E L S D + ++ Y
Sbjct: 379 AVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLY 438
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--AGNF-KMKSLQREFMRMSEAGFH 286
+ +F + E L + G +N+L+ Y AG F KM+ L F ++
Sbjct: 439 GRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGL---FQSLAAKNLK 495
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
PD+ T+ R A+SR ++ E M PD
Sbjct: 496 PDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPD 532
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 4/164 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P+ A ++ + ++ G PD ++ ++ Y G +AQ V+EE+
Sbjct: 328 ALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRL 387
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+++ L+ AY + G + I++++ + L P+ V + ++ +G+ GQ
Sbjct: 388 GITPTMKSHMLLLSAYSKAGDVAKCEDIVNEL--HESGLEPDTFVLNSMLNLYGRLGQFG 445
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
ME L M S ++ D +T N I Y R G +ME + L
Sbjct: 446 KMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSL 489
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 106/272 (38%), Gaps = 6/272 (2%)
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQ 162
L SSF V + + ++DAYGR + ++ A +P + Y+ + +
Sbjct: 139 LYRSSFQSDVMIFNLVIDAYGRKSLYK--MAETTYFELIEARCIPTEDTYALLLKAYCTS 196
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G LE E EM G + NA+I + G+ + R+KR E
Sbjct: 197 GLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETY 256
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ + K + +M + ++ + + L+ ++A + + F ++ E
Sbjct: 257 TLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE 316
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
G PD+ +N A+SR + M+H PD +Y +VDAY L +
Sbjct: 317 DGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHED 376
Query: 343 LDFGLSKMN-LDDSPVVSTDPYVFEAFGK-GD 372
+M L +P + + + A+ K GD
Sbjct: 377 AQAVFEEMKRLGITPTMKSHMLLLSAYSKAGD 408
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 64/147 (43%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V+ GR A + +K G+ P + L+ Y+ G V + + + EL S
Sbjct: 364 MVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESG 423
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
VL+ +++ YGR+G F ++ ++ + Y+ I+ +G+ G E ME
Sbjct: 424 LEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKME 483
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ + ++ D T + + YSR
Sbjct: 484 GLFQSLAAKNLKPDVVTWTSRLGAYSR 510
>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
Length = 384
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A QL +KS+G++P+ T A++ Y +G EA +W+E++ + + + S L++
Sbjct: 247 ATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIE 306
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+YG G + E ++ + R + ++P+ +Y+ + +GK G+ E EM GF
Sbjct: 307 SYGHHGMYQEALACFQDM--RKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGF 364
Query: 181 SVDSATGNAFIIYYSRFGSL 200
D T + ++ G L
Sbjct: 365 VPDGITYGILVRAFANAGRL 384
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 134/327 (40%), Gaps = 49/327 (14%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
LV L + A ++++ +K + + + T L+ YAN G + + + +++E+
Sbjct: 59 LVNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKG 118
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+ YGR G F E + + D++ Y+ AI+ +GK+G LE ME
Sbjct: 119 ESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDME 178
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L EM ++G D T N + Y++ ++ + + + + G R +TY
Sbjct: 179 RLLDEMDTKGVPPDQVTYNTLLDVYAK-------KSYFVKAHEILREMTEAGYRPNIWTY 231
Query: 230 -------LKERKF---FMLGEFLRDVGL--------------GRKDL---GNLLWNLLL- 261
KE+ L E L+ G+ GR L LW+ ++
Sbjct: 232 NIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIE 291
Query: 262 -------LSYAG---NFKMKSLQRE----FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
++Y+G ++ + +E F M ++G PD + A+ + +
Sbjct: 292 AGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCRE 351
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAY 334
L M E PD +TYG +V A+
Sbjct: 352 AELLYFEMTKEGFVPDGITYGILVRAF 378
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 106/281 (37%), Gaps = 35/281 (12%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
L +K K A +L+ +K G PD L+ N+G + A+ + +++ +
Sbjct: 28 LRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKQDKVSAN 87
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
+ ++L+ Y G + + ++ + Y+ I +G++G +
Sbjct: 88 LVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYD 147
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
EM G + D T N I Y + G L +ME R +D +G+ TY
Sbjct: 148 EMDGVGCAKDVHTYNIAIAMYGKRGLLEDME-------RLLDEMDTKGVPPDQVTY---- 196
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
N LL YA M+EAG+ P++ T+N
Sbjct: 197 ------------------------NTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYN 232
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
I + + + E++K + V P++VTY ++ Y
Sbjct: 233 IMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLY 273
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+N L+ Y K + M G D+ T+NI + + + D+ L+ M
Sbjct: 126 YNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMD 185
Query: 317 HESVGPDLVTYGCVVDAYLDK 337
+ V PD VTY ++D Y K
Sbjct: 186 TKGVPPDQVTYNTLLDVYAKK 206
>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 116/274 (42%), Gaps = 10/274 (3%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G+ K +++ +L ++S P+ T AL+ +A G +A+ ++E+L V
Sbjct: 275 GKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDV 334
Query: 115 QVLSDLMDAYGRIG---CFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELME 169
V + LM++Y R G EI S++ + C P+ Y+ + +G+ G E
Sbjct: 335 YVYNALMESYSRAGYPYGAAEIFSLMQHMGCE-----PDRASYNIMVDAYGRAGLHSDAE 389
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+EM G + + + YS+ +T+ E + + D + ++ Y
Sbjct: 390 AVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLY 449
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+ +F + + L ++ G +N+L+ Y ++ ++ F+ + E F PD+
Sbjct: 450 GRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDV 509
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
T+ R A+SR ++ E M PD
Sbjct: 510 VTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPD 543
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 5/283 (1%)
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
L SSF V + L+DAYG+ + E S+ Q+ + Y+ I + G
Sbjct: 146 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 205
Query: 165 LELMENTLKEMVSRGFS---VDSATGNAFII-YYSRFGSLTEMETAYGRLKRSRHLIDKE 220
+E E L EM + S + NA+I R G+ E + R+KR R E
Sbjct: 206 IERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTE 265
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
+ Y K K +M + ++ + + L+ ++A + + F ++
Sbjct: 266 TYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQL 325
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
E G PD+ +N ++SR + M+H PD +Y +VDAY L
Sbjct: 326 QEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 385
Query: 341 RNLDFGLSKMN-LDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+ + +M L +P + + + A+ K + EA ++
Sbjct: 386 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVK 428
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 76/163 (46%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P+ A ++ + ++ G PD ++ ++ Y G +A+ V+EE+
Sbjct: 339 ALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL 398
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+++ L+ AY + + +I+ ++S + V + ++ +G+ GQ M
Sbjct: 399 GIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKM 458
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
E L EM + + D +T N I Y + G L +E + LK
Sbjct: 459 EKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELK 501
>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 830
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 81/388 (20%), Positives = 146/388 (37%), Gaps = 90/388 (23%)
Query: 30 DLARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D ARK + K G+ V S+++ G+ A ++ ++ PD+ T L
Sbjct: 304 DEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNEL 363
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR----------------IGC 129
Y GF+ E V + + S + + + ++DAYG+ +GC
Sbjct: 364 AATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGC 423
Query: 130 ------FNEIISIIDQVSCRNADLLP--------------EVYSRAISCFGKQGQLELME 169
+N +++++ + S R D++ ++ ++ ++G+ +
Sbjct: 424 APNVYTYNSVLAMLGKKS-RTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVN 482
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L+EM + GF D T N I Y+R GS + YG + +S G TY
Sbjct: 483 KVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKS-------GFTPCVTTY 535
Query: 230 ------LKERKFFMLGE-FLRDVGLGRKDLGNLLWNLLLLSY--AGNFK----------- 269
L R + E ++D+ ++LLL Y AGN +
Sbjct: 536 NALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYD 595
Query: 270 ----------------------MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
++ ++R F ++ + G+ PDL N FSR MF
Sbjct: 596 GQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSK 655
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAYL 335
L + + P+L TY C++D Y+
Sbjct: 656 AREMLHFIHECGLQPNLFTYNCLMDLYV 683
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 119/310 (38%), Gaps = 39/310 (12%)
Query: 64 HQLVNTV----KSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
H VN V K+ G PD T L+ YA G +++ ++ E++ S F V +
Sbjct: 478 HNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNA 537
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L++A G + S+I + + YS + C+ K G + +E KE+
Sbjct: 538 LLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQ 597
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR-----------------SR-------- 214
++ + L ME A+ +L++ SR
Sbjct: 598 VFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAR 657
Query: 215 ---HLIDKEGIRAVSFT-------YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
H I + G++ FT Y++E + + E L+ + + + +N ++ +
Sbjct: 658 EMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGF 717
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
M+ R M+ G P + T+N ++ M +F + + + M + P
Sbjct: 718 CRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSE 777
Query: 325 VTYGCVVDAY 334
+TY +VD Y
Sbjct: 778 LTYKILVDGY 787
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/284 (18%), Positives = 121/284 (42%), Gaps = 3/284 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V LGR+ + +A +L + + E D ++ YA +G A +++++
Sbjct: 187 MVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIG 246
Query: 110 FVLSVQVLSDLMDAYGRIG-CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++ + ++D YG++G + I+ ++D++ + + S IS G++G L+
Sbjct: 247 LDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEA 306
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
L E+ G+ + N+ + + + G TE + ++ + D ++ T
Sbjct: 307 RKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAAT 366
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y++ F G + D + + N + + ++ +Y + R F +M + G P
Sbjct: 367 YVRA-GFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAP 425
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
++ T+N + S D+ L MK P+ T+ ++
Sbjct: 426 NVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTML 469
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 100/269 (37%), Gaps = 49/269 (18%)
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ----- 164
+ L V+ + ++ AY R G + I + D++ D Y+ + +GK G+
Sbjct: 212 YSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRI 271
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
LEL++ EM S+G D T + I R G L E
Sbjct: 272 LELLD----EMRSKGLEFDEFTCSTVISACGREGMLDEAR-------------------- 307
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+FL ++ L G +++N +L + M +
Sbjct: 308 ---------------KFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNN 352
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
PD T+N A + R + ++ M + V P+ +TY V+DAY + GR D
Sbjct: 353 CPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAY--GKAGREDD 410
Query: 345 F--GLSKM-NLDDSPVVSTDPYVFEAFGK 370
SKM +L +P V T V GK
Sbjct: 411 ALRLFSKMKDLGCAPNVYTYNSVLAMLGK 439
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/288 (17%), Positives = 116/288 (40%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C++++ GR+ A + + +K G P +++ + G EA + +E+
Sbjct: 290 CSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEME 349
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
++ ++L Y R G +E +++ID ++ + Y+ I +GK G+ +
Sbjct: 350 DNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGRED 409
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+M G + + T N+ + + ++ +K + ++ +
Sbjct: 410 DALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTML 469
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+E K + + LR++ + +N L+ SYA + + M ++GF
Sbjct: 470 AVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFT 529
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
P +TT+N A + + ++ M+ + P+ +Y ++ Y
Sbjct: 530 PCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCY 577
>gi|302817236|ref|XP_002990294.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
gi|300141856|gb|EFJ08563.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
Length = 1139
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/349 (19%), Positives = 135/349 (38%), Gaps = 41/349 (11%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
S G++P + T +++ + +A ++WE+L+ S LS + ++ Y ++G F
Sbjct: 335 SRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFE 394
Query: 132 EIISIIDQVSCRNADLLPE--VYSRAISCFGKQG-------------------------- 163
E + + + + A P+ +Y+ + GK G
Sbjct: 395 EALEVFEAM--LGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYAT 452
Query: 164 ---------QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
+ EL + +M + VD + I Y + G E E + + R
Sbjct: 453 MLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELR 512
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
L+D + ++ LK K+ + + ++ +L ++ W LL Y ++
Sbjct: 513 LLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDMAWKTLLHCYVKAGNVERAT 572
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ F + E+G DL +N ++ M D L + +K S+ PD V +G +V Y
Sbjct: 573 KTFKTLVESGI-ADLMAYNDVLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLY 631
Query: 335 LDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+ + + L +M +P T + A+G+ + + LE
Sbjct: 632 CNANMVAAAEEVLRQMREKGFTPDHITQGILINAYGEANRIEEAAGLLE 680
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/247 (19%), Positives = 96/247 (38%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ GR K+ LA + + L PD ++L YAN E ++E ++S
Sbjct: 278 LLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMYEAMMSRG 337
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V S + ++ + + + + + + +L P Y+ I+ + K G+ E
Sbjct: 338 IVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEAL 397
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+ M+ G+ DS N + + G E + ++R K +
Sbjct: 398 EVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHIC 457
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K KF + D+ + R + +++ ++ Y ++ F M+E D+
Sbjct: 458 EKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDV 517
Query: 290 TTFNIRA 296
TF++ A
Sbjct: 518 KTFSVMA 524
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 19/228 (8%)
Query: 141 SCRNADLLP--EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
S N L P + Y IS F K G+ E K++ S GF D + + Y++ G
Sbjct: 886 SLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSG 945
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRA--VSF-----TYLKERKFFMLGEFLRDVGLGRKD 251
+ +K G+R VS+ Y + +F + L ++
Sbjct: 946 MYEHAADLFEAMKL-------RGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCP 998
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
++ + LL+ +YA K + RM A P + +N +AFSR + S
Sbjct: 999 PSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHYNEVMLAFSRARLPRQAMES 1058
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVS 359
M+ + PD+V+ ++ L+ G + GLS ++ +VS
Sbjct: 1059 YLKMERSGIQPDVVSSRTMIRILLE---GSMFEEGLSLYKKTEAKLVS 1103
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 69/165 (41%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ + + A ++ +KS G PD +M CYA +G A ++E +
Sbjct: 901 TMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLR 960
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++L+DAY R G F + ++ +++ + IS + +G+
Sbjct: 961 GLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEA 1020
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
EN L+ M + N ++ +SR + +Y +++RS
Sbjct: 1021 ENALERMQTAAIRPTVRHYNEVMLAFSRARLPRQAMESYLKMERS 1065
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 76/166 (45%), Gaps = 1/166 (0%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A+++ + K LA + + ++ + D +++ Y G EA+ +++E+
Sbjct: 451 ATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNE 510
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
++ V+ S + + + G +NE + +++++ + +L + + C+ K G +E
Sbjct: 511 LRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDMAWKTLLHCYVKAGNVER 570
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
T K +V G + D N + Y+ F L + + + +LK S
Sbjct: 571 ATKTFKTLVESGIA-DLMAYNDVLSLYAEFDMLEDAKLLFQQLKSS 615
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 20/154 (12%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VYS + +G+ Q+ L E +EM+ + D + I+ Y+ EM T Y
Sbjct: 274 VYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMY--- 330
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ GI S TY E L D L +DL L L+YA M
Sbjct: 331 ----EAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYA---LM 383
Query: 271 KSLQREFMRMSE----------AGFHPDLTTFNI 294
++ R+ R E AG++PD +N+
Sbjct: 384 ITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNM 417
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 129/324 (39%), Gaps = 42/324 (12%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
CA+LV L R ++ A +++ ++ P S L+ A A + ++
Sbjct: 144 CAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQ 203
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRAISCFGKQGQ 164
+ +SV + + L+ A R G ++++D+V SC D++ +Y+ I CFGK G
Sbjct: 204 DVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIV--LYNVCIDCFGKAGS 261
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+++ E+ + G D + + + + G L E E +G+++ R +
Sbjct: 262 VDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNT 321
Query: 225 VSFTYLKERKF---FMLGEFLRDVG--------------LGRK---DLGNLLWNLL---- 260
+ Y +F + L E LR+ G LG+K D L++++
Sbjct: 322 MIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDA 381
Query: 261 ------------LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
+L AG R+ M + AG P+L + NI + + +
Sbjct: 382 KPNISTYNIIIDMLCMAGRVNEAYKIRDEMEL--AGLFPNLLSVNIMVDRLCKANQLEEA 439
Query: 309 HLSLEHMKHESVGPDLVTYGCVVD 332
H E P+ VTY ++D
Sbjct: 440 HRIFESASERGCNPNSVTYCSLID 463
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 115/306 (37%), Gaps = 45/306 (14%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
GRK+ H++ + G PD + L M C G V + + ++E++ S F+ V
Sbjct: 504 GRKED---GHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDV 560
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKE 174
+ S L+ + G E +I +S + L Y+ + K G+++ L+E
Sbjct: 561 RSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEE 620
Query: 175 MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234
M + AT +GS+ + RL + L ++ + + E
Sbjct: 621 MKVKHVHPTVAT----------YGSIVDGLAKIDRLDEAYMLFEEAKSKGI------ELN 664
Query: 235 FFMLGEFLRDVG-LGRKDLGNLL---------------WNLLLLSYAGNFKMKSLQREFM 278
+ + G +GR D L+ WN L+ + ++ F
Sbjct: 665 VILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQ 724
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY----------G 328
M E P+ T++I R+ + + + M+ + + P++VTY G
Sbjct: 725 SMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVG 784
Query: 329 CVVDAY 334
+ DAY
Sbjct: 785 NITDAY 790
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 105/273 (38%), Gaps = 41/273 (15%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
A+++ + ++ GL P+ ++ ++ LC AN + EA ++E + L
Sbjct: 404 AYKIRDEMELAGLFPNLLSVNIMVDRLCKANQ--LEEAHRIFESASERGCNPNSVTYCSL 461
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+D G+ G ++ + +++ D P +Y+ I F G+ E KEM+ RG
Sbjct: 462 IDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGG 521
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE-RKFFMLG 239
D N ++ + G + + + +K SF +L + R + +L
Sbjct: 522 RPDLTLLNTYMDCVFKAGEVEKGRAIFEDMK--------------SFGFLPDVRSYSILI 567
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
L G R + N+ F MS+ GF D +N
Sbjct: 568 HGLTKAGQAR-ETSNI---------------------FQAMSQQGFALDARAYNAVVDGL 605
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ + LE MK + V P + TYG +VD
Sbjct: 606 CKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVD 638
>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 779
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 143/365 (39%), Gaps = 48/365 (13%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L ++ EG+ PD T L+ ++ G V EA +V+ + + V + L+D YG
Sbjct: 167 LFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYG 226
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
+ + ++ ++ A P+V Y+ I +G+ G+ K+M G + D
Sbjct: 227 QADRHEGVGELLREM--EQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPD 284
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
T + + Y + G E+ + +K + G TY + F G F +
Sbjct: 285 VVTFSTLLEAYGKHGCYDEVRLLFTDMK-------ERGTEPDVNTYNTLIQVFGQGGFFQ 337
Query: 244 DVGLGRKDLGNLLWNLL-------LLSYAG-------NFKMKSLQREFMRMSEAGFHPDL 289
+ NL W+LL + +YAG K+ ++ M ++ P
Sbjct: 338 ESI-------NLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTT 390
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
F A+ +++ + + MK PDL TY ++ A+ G + G +
Sbjct: 391 DGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGG--GLYCEAGSAY 448
Query: 350 MNLDDSPV---VSTDPYVFEAFGKGDFHSSSEAFLEFKRQ--------RKWTYRKLIAVY 398
+ + D + VST + EAFG+G + +EF R + TY L+ VY
Sbjct: 449 LTMIDEGISADVSTYNSLIEAFGRGGLFDDA---IEFSRDMEEARCSPNRHTYEALMGVY 505
Query: 399 LKKQL 403
L
Sbjct: 506 CTAGL 510
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/377 (18%), Positives = 158/377 (41%), Gaps = 8/377 (2%)
Query: 8 LHGSFKFKRFNVPSHQTH-PKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQL 66
+ G + + N ++ T G +A+ + YR + D + + + ++ A +L
Sbjct: 1 MKGKYSYDVENAINNLTSLAPRGSIAKTMEGYRNKLTINDFSLIFREFAQRSDWQKALRL 60
Query: 67 VNTVKSEGLLPDNSTLCALML-CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
++ N + +M+ G + +A ++E++ + +V + L++AYG
Sbjct: 61 FKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYG 120
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQG-QLELMENTLKEMVSRGFSV 182
R G + ++ ++ + + P + Y+ I+ K G + E + +M G
Sbjct: 121 RNGQHEASLHLLARM--KREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQP 178
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T N + S G + E + + + + D A+ Y + + +GE L
Sbjct: 179 DIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELL 238
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
R++ + +N+L+ +Y K ++ + F +M EAG PD+ TF+ A+ +
Sbjct: 239 REMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKH 298
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR-LGRNLDFGLSKMNLDDSPVVSTD 361
+ ++ L MK PD+ TY ++ + +++ ++ P +ST
Sbjct: 299 GCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTY 358
Query: 362 PYVFEAFGKGDFHSSSE 378
+ + GKG H +++
Sbjct: 359 AGLLYSCGKGGLHKAAK 375
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 111/315 (35%), Gaps = 35/315 (11%)
Query: 25 HPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
H G+L R++ + V L+E GR K A ++ ++ G PD T
Sbjct: 231 HEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFST 290
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+ Y +G E ++++ ++ V + L+ +G+ G F E I++ +
Sbjct: 291 LLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGG 350
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
+ Y+ + GK G + + + M+ + + I Y +E
Sbjct: 351 VEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEAT 410
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
A+ +K S D E TY N L+ ++
Sbjct: 411 YAFNSMKESGCKPDLE-------TY----------------------------NALIGAH 435
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
AG ++ M + G D++T+N AF R +F D M+ P+
Sbjct: 436 AGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNR 495
Query: 325 VTYGCVVDAYLDKRL 339
TY ++ Y L
Sbjct: 496 HTYEALMGVYCTAGL 510
>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Vitis vinifera]
Length = 879
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 100/427 (23%), Positives = 166/427 (38%), Gaps = 57/427 (13%)
Query: 27 KNGDL--ARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K G L RK+I R +G + +L++ +K +A+ L +K +G LP
Sbjct: 216 KEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVE 275
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA---YGRI---------- 127
T A++ + G + E+ S ++VQV + ++DA +G I
Sbjct: 276 TYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGM 335
Query: 128 ---GCFNEIIS--IIDQVSCRN-----ADLLPE------------VYSRAISCFGKQGQL 165
GC +I++ + SCR+ AD L E Y+ I + KQG
Sbjct: 336 IECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGY 395
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ N L EM RG D T A + G + T ++ R + GI +
Sbjct: 396 DRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKM-LERGVFPDAGIYNI 454
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+ L ++ + L L + L + ++ L+ + N + ++ F E G
Sbjct: 455 LMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKG 514
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
+P + +N + + M D + MK + PD TY V+D Y+ + +LD
Sbjct: 515 MNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQ---HDLD 571
Query: 345 FGLSKM-----NLDDSPVVSTDPYVFEAFG-KGDFHSSSEAFLEFKR----QRKWTYRKL 394
G KM + P V T + F KGD H S + F E + TY L
Sbjct: 572 -GAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSIL 630
Query: 395 IAVYLKK 401
I + K+
Sbjct: 631 IGSFCKE 637
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 22/367 (5%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V+ L ++ K +L+ +G +P+ L+ Y G + A ++ EL
Sbjct: 210 MVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKG 269
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
F+ +V+ +++ + + G F I ++ +++ R + +VY+ I K G +
Sbjct: 270 FLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAV 329
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
T++ M+ G D T N I R G ++E + + + +K + Y
Sbjct: 330 ETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAY 389
Query: 230 LKERKFFMLGEFLRDVG-LGRK-DL---GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
K+ + +L ++ G K DL G L+ L++ AG + RE +M E G
Sbjct: 390 CKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVV---AGEVDVALTIRE--KMLERG 444
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
PD +NI + L L M +SV PD Y +VD ++ R G NLD
Sbjct: 445 VFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFI--RNG-NLD 501
Query: 345 FGLSKMNLDDSPVVSTDPYVFEAFGKG--DFHSSSEAFLEFKRQRK-------WTYRKLI 395
L ++ + A KG F +A R +K +TY +I
Sbjct: 502 EARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVI 561
Query: 396 AVYLKKQ 402
Y+K+
Sbjct: 562 DGYVKQH 568
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 120/295 (40%), Gaps = 20/295 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ L +K K A L+ + + +LPD L+ + NG + EA+ ++E +
Sbjct: 455 LMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKG 514
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLEL 167
+ + ++ Y + G + ++ I+++ R+ L P+ YS I + KQ L+
Sbjct: 515 MNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRH--LAPDEFTYSTVIDGYVKQHDLDG 572
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ +EMV + T + I + R G L + ++ + + +
Sbjct: 573 AQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIG 632
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL----------LSYAGNFKMKSLQREF 277
++ KE K F ++ + + ++ +N L+ +S GN ++ Q F
Sbjct: 633 SFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMF 692
Query: 278 M----RMSEAGFHPDLTTFNIRAVAFSRMSMF-WDLHLSLEHMKHESVGPDLVTY 327
+ RM G+ P +N + + MF L LS M + PD V++
Sbjct: 693 LNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLS-NKMTSKGCIPDSVSF 746
>gi|414864365|tpg|DAA42922.1| TPA: hypothetical protein ZEAMMB73_846849 [Zea mays]
Length = 485
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 130/320 (40%), Gaps = 30/320 (9%)
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY--SRA 155
A ++ E+LS + V + L+ AYG G ++ ++Q+ AD P+ Y S
Sbjct: 144 AAGLFREMLSERLRPTADVYTALIGAYGYSGLLEHALAAVEQMK-GAADCKPDGYTFSVL 202
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR-LKRSR 214
+ C K + +L+ L EM G +S NA I Y + EME A L+
Sbjct: 203 VDCCAKSRRFDLIPAVLDEMSYLGIECNSVIHNAIIDGYGKAAMFEEMEGALSTMLESGS 262
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--AGNF-KMK 271
++ D + +V Y + + + + L + +N+++ SY AG + KM
Sbjct: 263 NVPDIYTMNSVVGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNIMIRSYGKAGMYVKMM 322
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
S+ F M + F P TFN F R + MK + V P+ +TY +V
Sbjct: 323 SI---FRYMKKRFFSPTAVTFNTVIECFGRAGDIEKMEYYFRLMKIQGVKPNPITYCSLV 379
Query: 332 DAY-----LDKRLGRNLDFGLSKMNLDDSPVVSTDPY---VFEAFGK-GDFHSSSEAFLE 382
+ Y LDK G +++ VV P+ V A+ K GD E
Sbjct: 380 NGYSKAGLLDKVAG-------VIRQTENTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQL 432
Query: 383 FKRQR----KWTYRKLIAVY 398
K +R + TY +I Y
Sbjct: 433 MKEKRCKPDRITYATMIQAY 452
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 87/202 (43%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L ++S +PD T+ +++ Y N+G E + + E + + ++ +YG
Sbjct: 254 LSTMLESGSNVPDIYTMNSVVGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNIMIRSYG 313
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ G + +++SI + R ++ I CFG+ G +E ME + M +G +
Sbjct: 314 KAGMYVKMMSIFRYMKKRFFSPTAVTFNTVIECFGRAGDIEKMEYYFRLMKIQGVKPNPI 373
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T + + YS+ G L ++ + + + ++D V Y K ++ E L+ +
Sbjct: 374 TYCSLVNGYSKAGLLDKVAGVIRQTENTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQLM 433
Query: 246 GLGRKDLGNLLWNLLLLSYAGN 267
R + + ++ +Y +
Sbjct: 434 KEKRCKPDRITYATMIQAYTAH 455
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/417 (22%), Positives = 170/417 (40%), Gaps = 28/417 (6%)
Query: 6 LSLHGSFKFKRF--NVPSHQT----HPKNGDLARKIIRYRKQ-----EGFVDCASLVEDL 54
L + +RF +V +H T + + GDL R + +R + F C L+ L
Sbjct: 44 LEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCI-LIHGL 102
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
+ ++ A+QL++ + + PD + L+ G + A+ V + +L S V V
Sbjct: 103 CQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDV 162
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTL 172
+ L+ + +E +++++ + + L P+ Y+ ++ KQ QLE + L
Sbjct: 163 ITYTSLIVGCCQTNALDEARKLMEKM--KESGLTPDTVAYNALLNGLCKQNQLEEVSKLL 220
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
+EMV G D+ + N + G E ++ + D ++ + K
Sbjct: 221 EEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKV 280
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
K L D+ +GR+ ++ + L+ ++ ++ R M +AG PDL T
Sbjct: 281 SKMDEAERLLEDM-VGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVT 339
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFG-LSKM 350
+N + + H LE M + PD+VTY +V+ +LG+ D L +M
Sbjct: 340 YNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLC--KLGKVDDARLLLEM 397
Query: 351 NLDD--SPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKW-----TYRKLIAVYLK 400
L+ P + T + + F K LE ++ TY LI Y K
Sbjct: 398 MLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCK 454
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 113/294 (38%), Gaps = 39/294 (13%)
Query: 77 PDNSTLCALMLCYA---NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG----- 128
P NST AL+ ++ N+ VLE + E+L+ F V + ++ AY +IG
Sbjct: 22 PSNSTYGALITGFSRAGNSKMVLE---IANEMLARRFSPDVITHNTILKAYCQIGDLDRA 78
Query: 129 -------------CFNEIISIIDQVSCRNAD----LLPE-----------VYSRAISCFG 160
F I I C+ D LL E VY+ I+
Sbjct: 79 LSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLC 138
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K G+++ N LK M+ R D T + I+ + +L E ++K S D
Sbjct: 139 KMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTV 198
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
A+ K+ + + + L ++ ++ +N ++ + K + + +M
Sbjct: 199 AYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKM 258
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
E PD+ T+N F ++S + LE M P ++TY ++ +
Sbjct: 259 IEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGF 312
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/295 (18%), Positives = 118/295 (40%), Gaps = 14/295 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ L K +++ + ++PD T AL+ + G +LEA+ ++ E+++
Sbjct: 313 SSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT 372
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ L+D + + C +E + D + + + YS I+ + K +++
Sbjct: 373 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDD 432
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+E+ S+G ++ T N ++ + + G L + + + G+
Sbjct: 433 GMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV-------SRGVPPSVV 485
Query: 228 TY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
TY + E + R LG ++N+++ K+ F +
Sbjct: 486 TYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSL 545
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
S+ G PD+ T+N+ + + + MK + PD TY ++ A+L
Sbjct: 546 SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHL 600
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/309 (20%), Positives = 130/309 (42%), Gaps = 6/309 (1%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LC 88
L +++ +++ V ++L+ L K + A L++ + G PD T ++ LC
Sbjct: 191 LVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 250
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ N + A ++ ++ + SV S ++D+ + G F++ +S+ +++ +
Sbjct: 251 KSGNSAL--ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 308
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
YS I G+ + L+EM+ R D T +A I + + G L E + Y
Sbjct: 309 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 368
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGN 267
+ D ++ + KE + D+ + + +++ +++L+ SY
Sbjct: 369 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKA 427
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
++ R F +S G P+ T+N + F + + M V P +VTY
Sbjct: 428 KRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTY 487
Query: 328 GCVVDAYLD 336
G ++D D
Sbjct: 488 GILLDGLCD 496
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 115/292 (39%), Gaps = 26/292 (8%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RKKK A ++ G PD T L+ NGF LE +V L V Q
Sbjct: 146 RKKKLLFAFSVLGRAWKLGYEPDTITFSTLV-----NGFCLEGRVSEAVALVDRMVEMKQ 200
Query: 116 -----VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMEN 170
+S L++ G +E + +ID++ Y ++ K G L +
Sbjct: 201 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 260
Query: 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY- 229
++M R + I + GS + + + + + +GI+A TY
Sbjct: 261 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM-------EMKGIKADVVTYS 313
Query: 230 ------LKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSE 282
+ K+ + LR++ +GR + +++ ++ L+ + K+ + + M
Sbjct: 314 SLIGGLCNDGKWDDGAKMLREM-IGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT 372
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G PD T+N F + + + + + M + PD+VTY ++++Y
Sbjct: 373 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSY 424
>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 829
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/388 (20%), Positives = 146/388 (37%), Gaps = 90/388 (23%)
Query: 30 DLARKIIRYRK----QEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D ARK + K + G V S+++ G+ A ++ ++ PD+ T L
Sbjct: 303 DEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNEL 362
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR----------------IGC 129
Y GF+ E V + + S + + + ++DAYG+ +GC
Sbjct: 363 AATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGC 422
Query: 130 ------FNEIISIIDQVSCRNADLLP--------------EVYSRAISCFGKQGQLELME 169
+N +++++ + S R D++ ++ ++ ++G+ +
Sbjct: 423 APNVYTYNSVLAMLGKKS-RTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVN 481
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L+EM + GF D T N I Y+R GS + YG + +S G TY
Sbjct: 482 KVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKS-------GFTPCVTTY 534
Query: 230 ------LKERKFFMLGE-FLRDVGLGRKDLGNLLWNLLLLSY--AGNFK----------- 269
L R + E ++D+ ++LLL Y AGN K
Sbjct: 535 NALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYD 594
Query: 270 ----------------------MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
++ ++R F ++ + G+ PDL N F+R MF
Sbjct: 595 GHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSK 654
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAYL 335
L + + P+L TY C++D Y+
Sbjct: 655 AREMLHFIHECGLQPNLFTYNCLMDLYV 682
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 138/348 (39%), Gaps = 47/348 (13%)
Query: 64 HQLVNTV----KSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
H VN V K+ G PD T L+ YA G +++ ++ E++ S F V +
Sbjct: 477 HNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNA 536
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L++A R G + S+I + + YS + C+ K G ++ +E KE+
Sbjct: 537 LLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYD-- 594
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
G+ F S + T + RHL R + ER F L
Sbjct: 595 -------GHV-------FPSWILLRTLVLTNHKCRHL------RGM------ERAFDQLQ 628
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR-MSEAGFHPDLTTFNIRAVA 298
++ + DL ++ N +L +A N KM S RE + + E G P+L T+N
Sbjct: 629 KYGY-----KPDL--VVINSMLSMFARN-KMFSKAREMLHFIHECGLQPNLFTYNCLMDL 680
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPV 357
+ R W L+ +++ PD+V+Y V+ + K L + LS+M P
Sbjct: 681 YVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPT 740
Query: 358 VSTDPYVFEAFGKGDFHSSSEAFLEFK-----RQRKWTYRKLIAVYLK 400
+ T + + + + F R + TY+ L+ Y K
Sbjct: 741 IVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCK 788
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/284 (19%), Positives = 121/284 (42%), Gaps = 3/284 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V LGR+ + +A +L + + E D ++ YA G A ++ ++
Sbjct: 186 MVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIG 245
Query: 110 FVLSVQVLSDLMDAYGRIG-CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++ + ++D YG++G ++ I+ ++D++ + +L S IS G++G L+
Sbjct: 246 LDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEA 305
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
L E+ G+ + T N+ + + + G TE + ++ + D ++ T
Sbjct: 306 RKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAAT 365
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y++ F G + D + + N + + ++ +Y + R F M + G P
Sbjct: 366 YVRA-GFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAP 424
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
++ T+N + S D+ L MK P+ T+ ++
Sbjct: 425 NVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTML 468
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 108/287 (37%), Gaps = 35/287 (12%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C++++ GR+ A + + +K G P T +++ + G EA + +E+
Sbjct: 289 CSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEME 348
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
++ ++L Y R G +E +++ID ++ + Y+ I +GK G+
Sbjct: 349 DNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGR-- 406
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
++ R FS+ G A +Y + S+ M G+ R+ +I
Sbjct: 407 ------EDDALRLFSLMKDLGCAPNVY--TYNSVLAM---LGKKSRTEDVI--------- 446
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+ L ++ L WN +L + K + + M GF
Sbjct: 447 -------------KVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFE 493
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
PD TFN A++R D M P + TY +++A
Sbjct: 494 PDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNA 540
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 7/151 (4%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS-LEHM 315
+ +L SYA K K F +M E G P L T+N+ + +M WD L L+ M
Sbjct: 218 YTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLDEM 277
Query: 316 KHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFH 374
+ + + D T V+ A + + L+++ + P T + + FGK +
Sbjct: 278 RSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIY 337
Query: 375 SSSEAFLEFKRQRKW-----TYRKLIAVYLK 400
+ + + L+ TY +L A Y++
Sbjct: 338 TEALSILKEMEDNNCPPDSVTYNELAATYVR 368
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 4/265 (1%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
S G+ PD T +L+ + G A+ ++ ++ + + L+DA + G +
Sbjct: 289 SNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMD 348
Query: 132 EIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
I+ ++ +N +LP V YS I + K G+L+ N EM G +D + N
Sbjct: 349 LAFEIMSEMPTKN--ILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNT 406
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
+ Y++ G + ++ + D A+ Y K+ ++ + ++ GR
Sbjct: 407 LLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGR 466
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
L ++ L+ Y+ K F +AG D+ ++ A + +
Sbjct: 467 VSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSV 526
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAY 334
L+ M E + P++VTY ++DA+
Sbjct: 527 TLLDEMTKEGIRPNVVTYNSIIDAF 551
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 120/300 (40%), Gaps = 25/300 (8%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++++ LGR K LA + +T EG AL+ Y +G+ EA V++ + S
Sbjct: 194 SAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKS 253
Query: 108 SSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + ++ + ++DA G+ G F +++ I D + ++ ++ + G E
Sbjct: 254 NGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWE 313
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL-------TEMETA--YGRLKRSRHLI 217
MV +G D T N + + G + +EM T + +I
Sbjct: 314 AARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMI 373
Query: 218 D---KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
D K G + E KF VGL R + +N LL YA + +
Sbjct: 374 DGYAKVGRLDDALNMFNEMKFL-------GVGLDR-----VSYNTLLSVYAKLGRFEQAL 421
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M AG D+ T+N + + + ++ E MK V P+L+TY ++D Y
Sbjct: 422 DVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVY 481
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 110/275 (40%), Gaps = 25/275 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S+ LGR ++ A + +++ G+ D T AL+ Y E + V+EE+
Sbjct: 409 SVYAKLGRFEQ---ALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRG 465
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
++ S L+D Y + G + E + + + + A L +V YS I K G +E
Sbjct: 466 RVSPNLLTYSTLIDVYSKGGLYKEAMEVFREF--KQAGLKADVVLYSALIDALCKNGLVE 523
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM-----ETAYGRLKRSRHLIDKEG 221
L EM G + T N+ I + R S + ET +++ ++ +E
Sbjct: 524 SSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVESLSSIVVQEA 583
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
I + + R + G+ + K+ +G ++ + F +M
Sbjct: 584 IESQAADKEDNRIIEIFGKLAAEKACEAKN-------------SGKQEILCILGVFQKMH 630
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
E P++ TF+ A SR F D + LE ++
Sbjct: 631 ELKIKPNVVTFSAILNACSRCDSFEDASMLLEELR 665
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 124/288 (43%), Gaps = 4/288 (1%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+LV R + A +LV+ ++ GL P+ T +++ G + +A+ V++E++
Sbjct: 197 TLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKE 256
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ L+ Y ++GC +E +S+ +++ ++P+V ++ I K G LE
Sbjct: 257 GLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMT--RKGIMPDVVTFTSLIHVMCKAGNLE 314
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
++EM RG ++ T A I + + G L + A +++ R A+
Sbjct: 315 RAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALI 374
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
Y + E +R++ + ++ +L +Y N S + +M E G
Sbjct: 375 NGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVL 434
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD T++ D H+ ++M + PD VTY ++D +
Sbjct: 435 PDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGH 482
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 165/408 (40%), Gaps = 44/408 (10%)
Query: 27 KNGDLARKIIRYRKQE-------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDN 79
K GD + RK E V +++++ L + + A L ++ +G+ PD
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
T ++++ + ++G +A+ + +E+L V + L++A+ + G F E + D+
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350
Query: 140 VSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
+ R ++P YS I F KQ +L+ E+ M ++G S + T N I Y
Sbjct: 351 MLPRG--IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA 408
Query: 198 GSLTE-METAYGRLKRSRHLIDKEGIRAVSFTY-LKERKFFMLGEFLRDVGLGRKDLGNL 255
+ + ME H + + G+ A + TY F+++G+ + L ++ + +
Sbjct: 409 KRIDDGMELL--------HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460
Query: 256 L------WNLLLLSYAGNFKMKSLQREFMRMSEA-----------GFHPDLTTFNIRAVA 298
L + LL N K+K F M ++ G PD+ T+NI
Sbjct: 461 LCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPV 357
F + E M H + PD +TY ++D + RL S + SP
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580
Query: 358 VSTDPYVFEAFGK-GDFHSSSEAFLEFKRQ----RKWTYRKLIAVYLK 400
V T + + K G E F E R+ TY LI + K
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRK 628
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 165/408 (40%), Gaps = 44/408 (10%)
Query: 27 KNGDLARKIIRYRKQE-------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDN 79
K GD + RK E V +++++ L + + A L ++ +G+ PD
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
T ++++ + ++G +A+ + +E+L V + L++A+ + G F E + D+
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350
Query: 140 VSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
+ R ++P YS I F KQ +L+ E+ M ++G S + T N I Y
Sbjct: 351 MLPRG--IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA 408
Query: 198 GSLTE-METAYGRLKRSRHLIDKEGIRAVSFTY-LKERKFFMLGEFLRDVGLGRKDLGNL 255
+ + ME H + + G+ A + TY F+++G+ + L ++ + +
Sbjct: 409 KRIDDGMELL--------HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460
Query: 256 L------WNLLLLSYAGNFKMKSLQREFMRMSEA-----------GFHPDLTTFNIRAVA 298
L + LL N K+K F M ++ G PD+ T+NI
Sbjct: 461 LCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPV 357
F + E M H + PD +TY ++D + RL S + SP
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580
Query: 358 VSTDPYVFEAFGK-GDFHSSSEAFLEFKRQ----RKWTYRKLIAVYLK 400
V T + + K G E F E R+ TY LI + K
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRK 628
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 165/408 (40%), Gaps = 44/408 (10%)
Query: 27 KNGDLARKIIRYRKQE-------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDN 79
K GD + RK E V +++++ L + + A L ++ +G+ PD
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
T ++++ + ++G +A+ + +E+L V + L++A+ + G F E + D+
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350
Query: 140 VSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
+ R ++P YS I F KQ +L+ E+ M ++G S + T N I Y
Sbjct: 351 MLPRG--IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA 408
Query: 198 GSLTE-METAYGRLKRSRHLIDKEGIRAVSFTY-LKERKFFMLGEFLRDVGLGRKDLGNL 255
+ + ME H + + G+ A + TY F+++G+ + L ++ + +
Sbjct: 409 KRIDDGMELL--------HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460
Query: 256 L------WNLLLLSYAGNFKMKSLQREFMRMSEA-----------GFHPDLTTFNIRAVA 298
L + LL N K+K F M ++ G PD+ T+NI
Sbjct: 461 LCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPV 357
F + E M H + PD +TY ++D + RL S + SP
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580
Query: 358 VSTDPYVFEAFGK-GDFHSSSEAFLEFKRQ----RKWTYRKLIAVYLK 400
V T + + K G E F E R+ TY LI + K
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRK 628
>gi|357157771|ref|XP_003577908.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Brachypodium distachyon]
Length = 512
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 128/323 (39%), Gaps = 47/323 (14%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR +P LAH+L ++ +G P AL+ Y +G + +A + ++ ++
Sbjct: 168 LGRSGQPALAHRLFADMQQQGCQPTPELYTALIAAYCRSGLLDDALRLLGDMKAAPLCQP 227
Query: 114 -VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMEN 170
V S L+ A F+ + ++ +++ R + P ++ I S +G+ G+++ ME
Sbjct: 228 DVYTYSTLIKALVDASRFDLVDAMYKEMAERG--VAPNTVTQNIVLSGYGRAGRMDDMEK 285
Query: 171 TLKEMV-SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L M+ S D T N + + G + ME Y + + + + + Y
Sbjct: 286 LLSAMLDSTASKPDVWTMNIILSLFGNSGQVDLMEKWYEKFRGYGIEPETRTLNILIGAY 345
Query: 230 LKER---KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K+R K + EF+R + +N ++ ++A K++++ F +M G
Sbjct: 346 GKKRMYDKMSAVMEFMRKLAF---PWTTSTYNNVIEAFAEAGDEKNMEQTFNQMRSEGMK 402
Query: 287 PDLTTFNIRAVAFSRMSMFW-----------------------------------DLHLS 311
PD TF FS+ +F ++
Sbjct: 403 PDTKTFCCLINGFSKAGLFHKVVGMVKLAERLDVPANTSFHNSVLAACARAGDLVEMERV 462
Query: 312 LEHMKHESVGPDLVTYGCVVDAY 334
HMKH PD TY +V+AY
Sbjct: 463 FRHMKHVQCAPDATTYSILVEAY 485
>gi|255685430|gb|ACU28204.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685432|gb|ACU28205.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685434|gb|ACU28206.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685438|gb|ACU28208.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685440|gb|ACU28209.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685442|gb|ACU28210.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685444|gb|ACU28211.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685454|gb|ACU28216.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685456|gb|ACU28217.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685462|gb|ACU28220.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685464|gb|ACU28221.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685468|gb|ACU28223.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685472|gb|ACU28225.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685476|gb|ACU28227.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685480|gb|ACU28229.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685484|gb|ACU28231.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685486|gb|ACU28232.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685490|gb|ACU28234.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685494|gb|ACU28236.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685496|gb|ACU28237.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685504|gb|ACU28241.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685522|gb|ACU28250.1| At4g14190-like protein [Arabidopsis thaliana]
Length = 177
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%)
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
L+ ME + ++SR +++ +T + + Y+ FG + +ME ++ R +D+ +R
Sbjct: 2 LKRMEQMYQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRK 61
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
++ Y++ F L + R + R L W L LL +A + K L M EA
Sbjct: 62 LANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVRRKGLDYVVKEMEEAR 121
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ T NI +A+S+M F + L L ++ + V DLVT G V D
Sbjct: 122 VPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFD 169
>gi|357120957|ref|XP_003562190.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Brachypodium distachyon]
Length = 454
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 122/296 (41%), Gaps = 23/296 (7%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY--SRAISCFGKQGQLELMEN 170
+V V + L+ AYG G +E ++ ++ + AD P+ Y S I+C K + +L+
Sbjct: 128 TVDVYTALVGAYGYSGMLDEALATVELMK-GAADCKPDEYTFSILINCCCKSRRFDLIPP 186
Query: 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY-GRLKRSRHLIDKEGIRAVSFTY 229
L EM G + NA I Y + G L EM TA L+ ++ D + ++ + Y
Sbjct: 187 VLDEMSYLGIGCNVVIHNAIIDGYGKAGMLAEMGTALCNMLEDGDNVPDIYTMNSIIWAY 246
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+ + ++ + L + + +N+++ SY + + M F P
Sbjct: 247 GNRGRVDDMEKWYSEFQLMGVEPDSRTFNIMIKSYGKANMHEKMMMVLKYMKRRFFSPTA 306
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY-----LDK-----RL 339
TFNI F R + MK + + P+ +TY +V+ Y LDK R
Sbjct: 307 ATFNIIIECFGRAGDIEKMEYYFRLMKIQGIKPNPITYCSLVNGYSKAGILDKVPAIIRQ 366
Query: 340 GRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLI 395
N D L D+P + V A+ K E L+ +++K K+I
Sbjct: 367 TENTDVVL------DTPFFNC---VINAYAKSGDIKIMEEMLQLMKEKKCKPGKVI 413
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/264 (18%), Positives = 108/264 (40%), Gaps = 11/264 (4%)
Query: 3 TFSLSLHGSFKFKRFNV--PSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKP 60
TFS+ ++ K +RF++ P G +I +G+ L E
Sbjct: 167 TFSILINCCCKSRRFDLIPPVLDEMSYLGIGCNVVIHNAIIDGYGKAGMLAE-------- 218
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
+ L N ++ +PD T+ +++ Y N G V + + + E + + +
Sbjct: 219 -MGTALCNMLEDGDNVPDIYTMNSIIWAYGNRGRVDDMEKWYSEFQLMGVEPDSRTFNIM 277
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ +YG+ +++ ++ + R ++ I CFG+ G +E ME + M +G
Sbjct: 278 IKSYGKANMHEKMMMVLKYMKRRFFSPTAATFNIIIECFGRAGDIEKMEYYFRLMKIQGI 337
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ T + + YS+ G L ++ + + + ++D V Y K ++ E
Sbjct: 338 KPNPITYCSLVNGYSKAGILDKVPAIIRQTENTDVVLDTPFFNCVINAYAKSGDIKIMEE 397
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSY 264
L+ + + G +++ ++ +Y
Sbjct: 398 MLQLMKEKKCKPGKVIYTTMIQAY 421
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 165/390 (42%), Gaps = 45/390 (11%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
T+++ +HG KF + K ++ + +I + L+E R+
Sbjct: 281 TYNVLIHGLCKFGKME--------KAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGR 332
Query: 63 AHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
A +L++ ++ L+P + A++ LC+ + + A + E++ S +V V S L
Sbjct: 333 ALELLDEMEKRNLVPSAVSYGAMINGLCHCKD--LSLANKLLEKMTFSGLKPNVVVYSTL 390
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSR 178
+ Y G E ++D +SC + + P++ Y+ ISC K G++E L E+ R
Sbjct: 391 IMGYASEGRIEEARRLLDGMSC--SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGR 448
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
G D+ T AFI+ YS+ G +TE + + L+ + V F
Sbjct: 449 GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM-LDHGLMPNNPLYTVLI-----NGHFKA 502
Query: 239 GEFLRDVGLGR--KDLGNL----LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
G + + + R LG L + + N +++ + F + E G PD+ T+
Sbjct: 503 GNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTY 562
Query: 293 NIRAVAFSR---MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL---DKRLGRNLDFG 346
+ F + + ++LH + M + + P++ Y +VD D + R L G
Sbjct: 563 SSLISGFCKQGEVEKAFELH---DEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 619
Query: 347 LSKMNLD-DSPVVST--DPY-----VFEAF 368
+ + L+ DS ST D Y V EAF
Sbjct: 620 MPEKGLEPDSVTYSTMIDGYCKSENVAEAF 649
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 136/312 (43%), Gaps = 21/312 (6%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKS---EGLLPDNSTLCALM--LCY 89
+I K+ G +D A+ V + + ++ N+++S +GL+P+ T + LC
Sbjct: 162 LIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCR 221
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID-QVSCR-NADL 147
A + EA++ +EE+ + S L+D + R G +E++ I D VSC +L
Sbjct: 222 AKR--MNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINL 279
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
+ Y+ I K G++E LK M++ G +S T I Y R ++
Sbjct: 280 I--TYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELL 337
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKE-----RKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+++ R+L+ AVS+ + + + + L + ++++ L++
Sbjct: 338 DEMEK-RNLVPS----AVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIM 392
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
YA +++ +R MS +G PD+ +N S+ + L ++ + P
Sbjct: 393 GYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKP 452
Query: 323 DLVTYGCVVDAY 334
D VT+G + Y
Sbjct: 453 DAVTFGAFILGY 464
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/329 (20%), Positives = 135/329 (41%), Gaps = 16/329 (4%)
Query: 27 KNGDL--ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K+GD+ ARK+ ++G V +++++ + + A L + + S+G+ P +
Sbjct: 606 KSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSF 665
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
AL+ G + +A ++ E+L F ++ + L+D Y + E + ++
Sbjct: 666 VYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEM 724
Query: 141 SCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+ ++P+ Y+ I K G++E KEM R VD+ T + + Y++ G
Sbjct: 725 IAKQ--IMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLG 782
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG-NLLW 257
+E+ + ++ D+ V + + KE + LRD +G+ L +
Sbjct: 783 QSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFK-LRDEVVGKGMLTKGTIH 841
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
+LL+ + + + M E G P L + +F + E +K
Sbjct: 842 DLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKS 901
Query: 318 ESVGPDLVTYGCVVDAYL---DKRLGRNL 343
+ PD T +V+ L D RNL
Sbjct: 902 LGLVPDTTTLIDLVNGNLNDTDSEDARNL 930
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 130/321 (40%), Gaps = 17/321 (5%)
Query: 25 HPKNGDL--ARKIIRYRKQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD 78
H K G+L A I R+ G + C++ + L + + A ++ + +K +GL+PD
Sbjct: 499 HFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPD 558
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
T +L+ + G V +A + +E+ ++ + + L+D + G + D
Sbjct: 559 VFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFD 618
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+ + + YS I + K + + EM S+G S NA + + G
Sbjct: 619 GMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEG 678
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFT-----YLKERKFFMLGEFLRDVGLGRKDLG 253
+ME A + R ++ K +SF Y K K + +++ +
Sbjct: 679 ---DMEKA---MNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPD 732
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
++ + ++ + KM+ F M E D T+ ++++ ++ E
Sbjct: 733 HVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFE 792
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
M + V PD VTYG V+ A+
Sbjct: 793 KMVAKGVKPDEVTYGLVIYAH 813
>gi|302755244|ref|XP_002961046.1| hypothetical protein SELMODRAFT_74706 [Selaginella moellendorffii]
gi|300171985|gb|EFJ38585.1| hypothetical protein SELMODRAFT_74706 [Selaginella moellendorffii]
Length = 311
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 120/269 (44%), Gaps = 13/269 (4%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQV---SCRNADLLPEVYSRAISCFGKQGQLELME 169
SV + ++ + R +++ S++ Q+ ++ L+ + IS +GK G L ME
Sbjct: 11 SVASYNSVLSGFARAHLWSKAESLLAQILHTHRTDSSLVSTSFGLVISSYGKAGMLANME 70
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR--AVSF 227
+ + M++ G S ++T NA I Y + + +ME A + ++ I ++
Sbjct: 71 SLFRCMLNEGCSPSTSTFNAMISVYGKALRIPDMEAALQAMLAEFPGVEPNVITWCCLAD 130
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y + + + L + L ++L + L++ Y +S++R + M +AGF P
Sbjct: 131 AYRRAKLDARVDMALEKLLLKPEELDAKAYGLMVDIYGRRKDFQSVERCYKEMVDAGFKP 190
Query: 288 DLTTFNIRAV-----AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
D++ + AV A+ + +L+ M+ + + PD TY +V Y R+ R
Sbjct: 191 DVSAWTSMAVNIVLDAYGAKGSIRRMEQTLDEMEDDGIEPDSRTYTALVAGYAKARMVRR 250
Query: 343 LDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
++ +M + + D +V+ A G
Sbjct: 251 MESTFLRMRV---ACCAPDEFVYNALIDG 276
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 102/269 (37%), Gaps = 42/269 (15%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS--DLMDAYGRIGC 129
+EG P ST A++ Y + + + + +L+ + V++ L DAY R
Sbjct: 78 NEGCSPSTSTFNAMISVYGKALRIPDMEAALQAMLAEFPGVEPNVITWCCLADAYRRAKL 137
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA--TG 187
+ ++++ + +L + Y + +G++ + +E KEMV GF D + T
Sbjct: 138 DARVDMALEKLLLKPEELDAKAYGLMVDIYGRRKDFQSVERCYKEMVDAGFKPDVSAWTS 197
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTYLKERKFFMLGEFLRD 244
A I +G A G ++R +D+ +GI S TY
Sbjct: 198 MAVNIVLDAYG-------AKGSIRRMEQTLDEMEDDGIEPDSRTY--------------- 235
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
L+ YA ++ ++ F+RM A PD +N ++ + M
Sbjct: 236 -------------TALVAGYAKARMVRRMESTFLRMRVACCAPDEFVYNALIDGYASLGM 282
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ L M + +V V+++
Sbjct: 283 VEEAEQKLAEMSRSGLKASVVELTSVLNS 311
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 165/408 (40%), Gaps = 44/408 (10%)
Query: 27 KNGDLARKIIRYRKQE-------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDN 79
K GD + RK E V +++++ L + + A L ++ +G+ PD
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDL 290
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
T ++++ + ++G +A+ + +E+L V + L++A+ + G F E + D+
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350
Query: 140 VSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
+ R ++P YS I F KQ +L+ E+ M ++G S + T N I Y
Sbjct: 351 MLPRG--IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA 408
Query: 198 GSLTE-METAYGRLKRSRHLIDKEGIRAVSFTY-LKERKFFMLGEFLRDVGLGRKDLGNL 255
+ + ME H + + G+ A + TY F+++G+ + L ++ + +
Sbjct: 409 KRIDDGMELL--------HEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460
Query: 256 L------WNLLLLSYAGNFKMKSLQREFMRMSEA-----------GFHPDLTTFNIRAVA 298
L + LL N K+K F M ++ G PD+ T+NI
Sbjct: 461 LCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPV 357
F + E M H + PD +TY ++D + RL S + SP
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580
Query: 358 VSTDPYVFEAFGK-GDFHSSSEAFLEFKRQ----RKWTYRKLIAVYLK 400
V T + + K G E F E R+ TY LI + K
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRK 628
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 132/310 (42%), Gaps = 11/310 (3%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+LV L R+K+ L++ V G+ PD+ L A++ ++++G V EA +++++
Sbjct: 99 TTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKE 158
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+ + L+ +G +G E + +++ + ++ ++ P Y+ I + + +L
Sbjct: 159 YGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMG-QDENVKPNDRTYNILIQAWCTKKKL 217
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E N L +MV+ G D T N Y++ G + E +++ ++ ++ +
Sbjct: 218 EEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGII 277
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLG----NLLWNLLLLSYAGNFKMKSLQREFMRMS 281
Y KE FL + K+LG +++N L+ Y + M
Sbjct: 278 ISGYCKEGNMTEALRFLYRM----KELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLME 333
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
E G PD+ TF+ A+S + + M + PD+ Y + Y+ R
Sbjct: 334 EFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPR 393
Query: 342 NLDFGLSKMN 351
+ L+ M+
Sbjct: 394 KAESLLTSMS 403
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 134/330 (40%), Gaps = 56/330 (16%)
Query: 42 EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVV 101
+GF+ C L E A QL + ++ +PD T L++ + + EA +
Sbjct: 274 QGFIRCGRLAE----------ATQLFESTMTKESVPDVFTY-NLLIALCKSKQLEEALTL 322
Query: 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCF 159
++E VL V S LMDA+G+ G + + + + + A +P+ VY+ ISC
Sbjct: 323 FQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNM--QKAGCMPDTVVYNVLISCL 380
Query: 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
GKQG+++ L++M +G D T N I S G + + +G +KR +H D
Sbjct: 381 GKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDV 440
Query: 220 -------EGIRAVS--------FTYLKERK-------FFMLGEFLRDVGLGRKDL----- 252
G++ + F ++ K F L + L G L
Sbjct: 441 VTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSAR 500
Query: 253 --------GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR--- 301
+ ++N L+ + + ++ F M E PD T+ I + FSR
Sbjct: 501 LVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGH 560
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
SM +L L+ M E P L TY ++
Sbjct: 561 TSMAMEL---LQEMVREGHTPALATYNVLI 587
>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
Length = 646
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 113/291 (38%), Gaps = 11/291 (3%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+E GR + + + GL P T ALM A G + + V +E+ +
Sbjct: 361 LIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAG 420
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI------SCFGKQG 163
LS + L+ +Y G F ++ ID++ L + + C +
Sbjct: 421 LQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEA 480
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
QL L ++ G S D NA I ++ G + +++++ D
Sbjct: 481 QL-----ALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYN 535
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
+ Y +E + E + ++ K + +N LL SY + +M R F M A
Sbjct: 536 CLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAA 595
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD TFN ++S + ++ + +E+M P +T+ ++D Y
Sbjct: 596 RVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGY 646
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 119/308 (38%), Gaps = 36/308 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L ++ S+GL PD T C L+ + +A + E+ ++ ++ + L+D
Sbjct: 234 AAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILID 293
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
YGR+ ++++ + + +N ++ + FG G L + N +EM G+
Sbjct: 294 IYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMP 353
Query: 183 DSATGNAFIIYYSR-------------------------FGSLTEMETAYGRLKRSRHL- 216
T N I Y R F +L GR ++ +
Sbjct: 354 GVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVS 413
Query: 217 --IDKEGIR-------AVSFTYLKERKFFMLGEFLRDV-GLGRKDLGNLLWNLLLLSYAG 266
+ + G++ + +Y +FF L +++ ++ ++ L +L +L+Y
Sbjct: 414 QEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCK 473
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
Q ++ + G PD+ FN ++ LE ++ + PD VT
Sbjct: 474 CCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVT 533
Query: 327 YGCVVDAY 334
Y C++ Y
Sbjct: 534 YNCLMSMY 541
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ G+ A +L+ +++ G+ P+ T L+ YA G EA + + LLS
Sbjct: 185 ALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSK 244
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
L+ A+ R + + + ++ R + P + Y+ I +G+ +L+
Sbjct: 245 GLCPDEFTYCTLISAFNRAERYEKALETFTEM--RKTNCTPNIVTYNILIDIYGRMEKLD 302
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
M K M + + D T N+ + + G LTE+ + +KR+ ++
Sbjct: 303 DMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYM 352
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 22/249 (8%)
Query: 64 HQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123
L +K + PD+ T ++ N EA +++E+ + + + L+D
Sbjct: 130 QSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDV 189
Query: 124 YGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFS 181
YG+ G E ++ V A + P + Y+ I+ + + G + K ++S+G
Sbjct: 190 YGKGGMHKEASELL--VEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLC 247
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH---------LIDKEGIRAVSFTYLKE 232
D T I ++R + + ++++ LID G +K
Sbjct: 248 PDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKV 307
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
KF D+ + WN LL S+ + + F M AG+ P + TF
Sbjct: 308 FKFMQEKNCTPDL---------VTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTF 358
Query: 293 NIRAVAFSR 301
NI + R
Sbjct: 359 NILIECYGR 367
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 137/353 (38%), Gaps = 51/353 (14%)
Query: 2 ETFSLSLHGSFKFKRFNVPSHQTH---------PKNGDLARKIIRYRKQEGF----VDCA 48
E LSL K N P+ T+ N D A ++ R +EG +
Sbjct: 373 EEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLN 432
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+LV+ L + + H A + N +K +GL + +T AL+ + + A +EE+LSS
Sbjct: 433 TLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSS 492
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V L+ G N+ ++ ++ L Y+ IS F K+ +LE +
Sbjct: 493 GCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERV 552
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
L EM G D+ T N I Y + G + TA +++ + KEG+R T
Sbjct: 553 YELLTEMEETGVKPDTITYNTLISYLGKTG---DFATASKVMEK----MIKEGLRPSVVT 605
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM-SEAGFHP 287
Y ++ +Y + + F M S + P
Sbjct: 606 Y----------------------------GAIIHAYCSKKNVDEGMKIFGEMCSTSKVPP 637
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVVDAYLDKRL 339
+ +NI A R + D +SL E MK + V P+ TY ++ DK++
Sbjct: 638 NTVIYNILIDALCRNNDV-DRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKM 689
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 103/285 (36%), Gaps = 73/285 (25%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
AH+L + EG+ P+ TL L+ +G V A + E+ + + L+
Sbjct: 412 AHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALIS 471
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A+ + N RA+ CF +EM+S G S
Sbjct: 472 AFCGVNNIN----------------------RAMQCF-------------EEMLSSGCSP 496
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ ++YYS L GR+ + ++ K ++ F+
Sbjct: 497 DA------VVYYSLISGLC----IAGRMNDASVVVSK--LKLAGFS-------------- 530
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
L +N+L+ + K++ + M E G PD T+N +
Sbjct: 531 ---------LDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKT 581
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGL 347
F +E M E + P +VTYG ++ AY K +N+D G+
Sbjct: 582 GDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSK---KNVDEGM 623
>gi|255685482|gb|ACU28230.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685488|gb|ACU28233.1| At4g14190-like protein [Arabidopsis thaliana]
Length = 177
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%)
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
L+ ME + ++SR +++ +T + + Y+ FG + +ME ++ R +D+ +R
Sbjct: 2 LKRMEQMYQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCTKIIRFGISLDEGLVRK 61
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
++ Y++ F L + R + R L W L LL +A + K L M EA
Sbjct: 62 LANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVRRKGLDYVVKEMEEAR 121
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ T NI +A+S+M F + L L ++ + V DLVT G V D
Sbjct: 122 VPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFD 169
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/295 (18%), Positives = 118/295 (40%), Gaps = 14/295 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ L K +++ + ++PD T AL+ + G +LEA+ ++ E+++
Sbjct: 284 SSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT 343
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ L+D + + C +E + D + + + YS I+ + K +++
Sbjct: 344 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDD 403
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+E+ S+G ++ T N ++ + + G L + + + G+
Sbjct: 404 GMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV-------SRGVPPSVV 456
Query: 228 TY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
TY + E + R LG ++N+++ K+ F +
Sbjct: 457 TYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSL 516
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
S+ G PD+ T+N+ + + + MK + PD TY ++ A+L
Sbjct: 517 SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHL 571
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/309 (20%), Positives = 130/309 (42%), Gaps = 6/309 (1%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LC 88
L +++ +++ V ++L+ L K + A L++ + G PD T ++ LC
Sbjct: 162 LVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 221
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ N + A ++ ++ + SV S ++D+ + G F++ +S+ +++ +
Sbjct: 222 KSGNSAL--ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
YS I G+ + L+EM+ R D T +A I + + G L E + Y
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGN 267
+ D ++ + KE + D+ + + +++ +++L+ SY
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKA 398
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
++ R F +S G P+ T+N + F + + M V P +VTY
Sbjct: 399 KRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTY 458
Query: 328 GCVVDAYLD 336
G ++D D
Sbjct: 459 GILLDGLCD 467
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 115/292 (39%), Gaps = 26/292 (8%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RKKK A ++ G PD T L+ NGF LE +V L V Q
Sbjct: 117 RKKKLLFAFSVLGRAWKLGYEPDTITFSTLV-----NGFCLEGRVSEAVALVDRMVEMKQ 171
Query: 116 -----VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMEN 170
+S L++ G +E + +ID++ Y ++ K G L +
Sbjct: 172 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 231
Query: 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY- 229
++M R + I + GS + + + + + +GI+A TY
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM-------EMKGIKADVVTYS 284
Query: 230 ------LKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSE 282
+ K+ + LR++ +GR + +++ ++ L+ + K+ + + M
Sbjct: 285 SLIGGLCNDGKWDDGAKMLREM-IGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT 343
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G PD T+N F + + + + + M + PD+VTY ++++Y
Sbjct: 344 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSY 395
>gi|356528509|ref|XP_003532845.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Glycine max]
Length = 580
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 30/188 (15%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+YS+ IS GK+GQ + EM + G D++ NA I
Sbjct: 174 IYSKLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALI------------------- 214
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ HL ++ I+A++ +G F + G+ R + +N+LL ++A +
Sbjct: 215 --TAHLRSRDKIKALAKA---------IGYFQKMKGMERCKPNIVTYNILLRAFAQARNV 263
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ + F + E+ PD+ TFN A+ + M ++ L MK PDL+T+ +
Sbjct: 264 EQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLL 323
Query: 331 VDAYLDKR 338
+D+Y K+
Sbjct: 324 IDSYGKKQ 331
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 59/301 (19%), Positives = 111/301 (36%), Gaps = 44/301 (14%)
Query: 31 LARKIIRYRKQEGFVDCAS-------LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC 83
LA+ I ++K +G C L+ + + + L + + PD T
Sbjct: 227 LAKAIGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFN 286
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ-VSC 142
+M Y NG + E + V + S+ + + L+D+YG+ F ++ + +
Sbjct: 287 GVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQAFGKMEQVFKSLLHS 346
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ LP ++ I +GK + E+ K+M G+++ T + I Y ++
Sbjct: 347 KERPSLP-TFNSMILNYGKARLKDKAEDVFKKMTDMGYTLSFVTHESMIYMYGFCDCVS- 404
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
R+ L D+ L E K + L N +L
Sbjct: 405 ---------RAAQLFDE----------LVESKVHIKVSTL---------------NAMLD 430
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
Y N + F R HPD +TF + A+++ + L L+HM + + P
Sbjct: 431 VYCLNGLPQEADSLFERAISIKIHPDSSTFKLLYKAYTKANQKELLDKLLKHMDKDGIIP 490
Query: 323 D 323
+
Sbjct: 491 N 491
>gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Glycine max]
Length = 503
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 35/196 (17%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+YS+ IS GK+GQ + EM + G D++ NA I
Sbjct: 111 IYSKLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALI------------------- 151
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ HL ++ +A++ +G F + G+ R + +N+LL ++A +
Sbjct: 152 --TAHLHSRDKTKALAKA---------IGYFQKMKGMERCKPNIVTYNILLRAFAQARNV 200
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ + F + E+ PD+ TFN A+ + M ++ L MK PDL+T+ +
Sbjct: 201 EQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLL 260
Query: 331 VDAYLDKRLGRNLDFG 346
+D+Y G+ +FG
Sbjct: 261 IDSY-----GKKQEFG 271
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 99/231 (42%), Gaps = 17/231 (7%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y+ + F + +E + + K++ S D T N + Y + G + EME R+
Sbjct: 186 TYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIREMEAVLARM 245
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
K ++ D + +Y K+++F + + + + ++ +N ++L+Y G ++
Sbjct: 246 KSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFKSLLRSKERASLPTFNSMILNY-GKARL 304
Query: 271 KSLQRE-FMRMSEAGFHPDLTTFN--IRAVAF----SRMSMFWD-LHLSLEHMKHESVGP 322
K + F RM++ G+ P T I F SR + +D L S H+K
Sbjct: 305 KDKAEDVFKRMTDMGYTPSFVTHESLIYMYGFCDCVSRAAQLFDELVESKAHIK------ 358
Query: 323 DLVTYGCVVDAYLDKRLGRNLDFGLSKMN-LDDSPVVSTDPYVFEAFGKGD 372
+ T ++D Y L + D + N + P ST +++A+ K +
Sbjct: 359 -VSTLNAMLDVYCINGLPQEADSLFERANSIKIYPDSSTFKLLYKAYTKAN 408
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 165/390 (42%), Gaps = 45/390 (11%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
T+++ +HG KF + K ++ + +I + L+E R+
Sbjct: 82 TYNVLIHGLCKFGKME--------KAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGR 133
Query: 63 AHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
A +L++ ++ L+P + A++ LC+ + + A + E++ S +V V S L
Sbjct: 134 ALELLDEMEKRNLVPSAVSYGAMINGLCHCKD--LSLANKLLEKMTFSGLKPNVVVYSTL 191
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSR 178
+ Y G E ++D +SC + + P++ Y+ ISC K G++E L E+ R
Sbjct: 192 IMGYASEGRIEEARRLLDGMSC--SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGR 249
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
G D+ T AFI+ YS+ G +TE + + L+ + V F
Sbjct: 250 GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM-LDHGLMPNNPLYTVLI-----NGHFKA 303
Query: 239 GEFLRDVGLGR--KDLGNL----LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
G + + + R LG L + + N +++ + F + E G PD+ T+
Sbjct: 304 GNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTY 363
Query: 293 NIRAVAFSR---MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL---DKRLGRNLDFG 346
+ F + + ++LH + M + + P++ Y +VD D + R L G
Sbjct: 364 SSLISGFCKQGEVEKAFELH---DEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 420
Query: 347 LSKMNLD-DSPVVST--DPY-----VFEAF 368
+ + L+ DS ST D Y V EAF
Sbjct: 421 MPEKGLEPDSVTYSTMIDGYCKSENVAEAF 450
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 117/271 (43%), Gaps = 18/271 (6%)
Query: 73 EGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
+GL+P+ T + LC A + EA++ +EE+ + S L+D + R G
Sbjct: 4 KGLVPNTYTYTIITAGLCRAKR--MNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDI 61
Query: 131 NEIISIID-QVSCR-NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN 188
+E++ I D VSC +L+ Y+ I K G++E LK M++ G +S T
Sbjct: 62 DEVLRIKDVMVSCGIPINLI--TYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFC 119
Query: 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE-----RKFFMLGEFLR 243
I Y R ++ +++ R+L+ AVS+ + + + + L
Sbjct: 120 LLIEGYCREHNMGRALELLDEMEK-RNLVPS----AVSYGAMINGLCHCKDLSLANKLLE 174
Query: 244 DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
+ ++++ L++ YA +++ +R MS +G PD+ +N S+
Sbjct: 175 KMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAG 234
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ L ++ + PD VT+G + Y
Sbjct: 235 KMEEASTYLLEIQGRGLKPDAVTFGAFILGY 265
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 123/306 (40%), Gaps = 22/306 (7%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
++ +L++ G+ K L + + S GL PD T L+ Y G ++ A +
Sbjct: 398 YITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHN 457
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
E++ ++ L+D + G + ++D++ + L +Y+ ++ K G
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+E +KEM G D+ T I Y R G + + K + ++D+ G++
Sbjct: 518 NIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAH------KLLQEMLDR-GLQ 570
Query: 224 AVSFTY-LKERKFFMLGEFLRDVGLGRKDLGNLL----------WNLLLLSYAGNFKMKS 272
T+ + F MLG L D G + LG +L +N L+ + M +
Sbjct: 571 PTVVTFNVLMNGFCMLG-MLED---GDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNT 626
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ + RM G PD T+NI + + + M + P + +Y ++
Sbjct: 627 TTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIK 686
Query: 333 AYLDKR 338
+ KR
Sbjct: 687 RFYKKR 692
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 127/305 (41%), Gaps = 17/305 (5%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG KK A +L++ ++ +GL P+ T +++L G EA+ V E++S +
Sbjct: 306 LGELKK---ALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPD 362
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
V + L+ + ++G D++ + Y+ I FG+ G++ +N
Sbjct: 363 NVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFH 422
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
EM+SRG D T I Y + G + + + + + + A+ K
Sbjct: 423 EMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHG 482
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLL--LSYAGNFKMK-SLQREFMRMSEAGFHPDLT 290
+ E L ++ L ++N ++ + AGN + L +E M AG PD
Sbjct: 483 ELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKE---MEVAGIDPDAI 539
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL--------DKRLGRN 342
T+ A+ R+ H L+ M + P +VT+ +++ + D+ LG
Sbjct: 540 TYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599
Query: 343 LDFGL 347
L+ G+
Sbjct: 600 LEKGI 604
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/296 (18%), Positives = 118/296 (39%), Gaps = 20/296 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ L + K A +++ + S+ ++PDN L+ + G V A ++E+LS
Sbjct: 333 SIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSK 392
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ L+ +G+ G E ++ ++ R Y+ I + K G++
Sbjct: 393 KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNA 452
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID---KEGIRAV 225
+ EMV G + + T +G+L + +G L + L+D K+G++
Sbjct: 453 FSLHNEMVQMGMTPNIVT----------YGALIDGLCKHGELDTANELLDEMRKKGLQLN 502
Query: 226 SFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
Y K + ++++ + D + + ++ +Y + +
Sbjct: 503 VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M + G P + TFN+ F + M D L M + + PD +TY ++ +
Sbjct: 563 EMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQH 618
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 26/283 (9%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV-VWEELLSSSFVLSVQVLSDLM 121
A +L++ + S GL+ + A + ANN +E + V+ E S S ++ +
Sbjct: 209 ARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNII---I 265
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRG 179
+ R+G E ++ Q+ R++ P+V YS I + G+L+ + +M +G
Sbjct: 266 YSLCRLGKVKEAHRLLMQMDFRSST--PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKG 323
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
+ T N+ I+ + G E E + + + D V +T L FF LG
Sbjct: 324 LKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDN-----VVYTTLIH-GFFKLG 377
Query: 240 EFLR-----DVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
D L +K + + + L+ + K+ Q F M G PD T+
Sbjct: 378 HVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYT 437
Query: 294 IRAVAFSR---MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + M + LH + M + P++VTYG ++D
Sbjct: 438 TLIDVYCKAGEMVNAFSLHNEMVQM---GMTPNIVTYGALIDG 477
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/338 (19%), Positives = 139/338 (41%), Gaps = 6/338 (1%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV-VWEELL 106
+L+ GR K ++ +L+ +K E + P T ++ A G E + ++ E+
Sbjct: 182 TALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMR 241
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
+ + L+ A G +E + ++ ++P++ Y+ + FGK +
Sbjct: 242 HEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMN--EGGVVPDITTYTYLVDTFGKLNR 299
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
L+ + LKEM S G + ++ N + Y+R G++ + + ++ + + + E
Sbjct: 300 LDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSI 359
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+ Y K ++ + E ++ + + +N L+ + K + F M+E
Sbjct: 360 LLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEEN 419
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
P++ T+ A + + D L HM + + P Y V++AY +
Sbjct: 420 VEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEAL 479
Query: 345 FGLSKMN-LDDSPVVSTDPYVFEAFGKGDFHSSSEAFL 381
L+ MN + P + T + F +G + +EA L
Sbjct: 480 VTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAIL 517
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/363 (19%), Positives = 146/363 (40%), Gaps = 11/363 (3%)
Query: 26 PKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
P G +AR + ++ + D A + ++ ++ + +L ++ + N + +
Sbjct: 89 PPRGSIARCLDVFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTI 148
Query: 86 MLCY-ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
M+ G + + ++EE+ + SV + L+++YGR G + + +++++
Sbjct: 149 MISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKER 208
Query: 145 ADLLPEVYSRAISCFGKQG-QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
Y+ I+ + G E + EM G D T N + S G E
Sbjct: 209 VSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEA 268
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL----WNL 259
E + + + D + T+ K + + E L+++ GN+ +N+
Sbjct: 269 EMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMA----STGNVPEISSYNV 324
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
LL +YA ++ F M EAG P+ T++I + + + ++ MK +
Sbjct: 325 LLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSN 384
Query: 320 VGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSSE 378
PD TY ++D + + + + M ++ P + T + A GKG H ++
Sbjct: 385 TEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAK 444
Query: 379 AFL 381
L
Sbjct: 445 KIL 447
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 114/272 (41%), Gaps = 20/272 (7%)
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
Q+ C+ + +Y+ IS G++G LE + +EM + G S + A I Y R G
Sbjct: 136 QIWCKPNE---HIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNG 192
Query: 199 SLTEMETAYGRLKRSRH----LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
R+K+ R L I + + L L +R G+ + D+
Sbjct: 193 KYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGI-QPDI-- 249
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ +N LL + + + F M+E G PD+TT+ F +++ + L+
Sbjct: 250 VTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKE 309
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLD-FGLSKMNLDDSPVVSTDPY--VFEAFGK- 370
M P++ +Y +++AY R+G D G+ ++ + V + + Y + +GK
Sbjct: 310 MASTGNVPEISSYNVLLEAY--ARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKH 367
Query: 371 GDFHSSSEAFLEFK----RQRKWTYRKLIAVY 398
G + E FLE K TY LI V+
Sbjct: 368 GRYDEVRELFLEMKVSNTEPDAATYNTLIDVF 399
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 71/164 (43%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L + + E + P+ T L+ G +A+ + + + S + + +++AYG
Sbjct: 411 LFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYG 470
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ + E + ++ ++ + E Y+ I F + G + E L +M G + +
Sbjct: 471 QAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVARERD 530
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+ N I + + G E AY +++SR + D+ + AV Y
Sbjct: 531 SFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVY 574
>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
Length = 1429
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 124/296 (41%), Gaps = 15/296 (5%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGL-LPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
C S+V + P A+Q+VN +++G + ++ Y +A+ V L
Sbjct: 719 CKSMVVVYCKLGFPETAYQVVNQAETKGFHFACSPMYTDIIEAYGKLKLWQKAESVVGNL 778
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
S ++ + LM AY GC+ +I + + E ++ + G+L
Sbjct: 779 RQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRL 838
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E + ++E+ GF + ++ + ++R G++ E+ Y +K + +L IR
Sbjct: 839 EELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYL---PTIR-- 893
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGN-------LLWNLLLLSYAGNFKMKSLQREFM 278
Y + G+ +RD + ++ +WN +L Y K + +
Sbjct: 894 --LYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQ 951
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R+ E+G PD TT+N + + R + + ++ M++ + P L TY ++ A+
Sbjct: 952 RIKESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAF 1007
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 121/310 (39%), Gaps = 39/310 (12%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + NT+ +G P ++ L+ +G + E VV EEL F +S + ++D
Sbjct: 806 ARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLD 865
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
A+ R G E+ I S + A LP + Y I K ++ E + EM F
Sbjct: 866 AFARAGNIFEVNKIYS--SMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANF 923
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FM 237
V+ A N+ + Y+ + Y R+K S D+ + Y ++R+ +
Sbjct: 924 KVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYS 983
Query: 238 LGEFLRDVGL--------------GRKD--------LGNLLWNLLLLSYAGNFKMKSLQR 275
L + +R++GL G++ LL L L + M + R
Sbjct: 984 LMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISR 1043
Query: 276 E----------FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+ M AG P L T ++ V++S + L ++K+ V +
Sbjct: 1044 DSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTL 1103
Query: 326 TYGCVVDAYL 335
Y V+DAYL
Sbjct: 1104 PYSSVIDAYL 1113
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 101/244 (41%), Gaps = 17/244 (6%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
P+L +L++ V++ GL PD T L+ + + + A V+E++ + + +
Sbjct: 278 PNLVVELLDMVRNSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNA 337
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
++ YGR G E + ++ + Y+ + F ++ E ++ ++M G
Sbjct: 338 MISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMG 397
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE------- 232
F D T N I Y + G L Y +K + A+++T L +
Sbjct: 398 FGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKG----LSGRNPDAITYTVLIDSLGKANR 453
Query: 233 --RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
++ E L DVG+ + L ++ L+ YA K + + F M +G PD
Sbjct: 454 SVEAAALMSEML-DVGI-KPTLQT--YSALICGYAKAGKREEAEDTFSCMLRSGTKPDNL 509
Query: 291 TFNI 294
+++
Sbjct: 510 AYSV 513
>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
Length = 617
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 121/303 (39%), Gaps = 31/303 (10%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-L 106
+ L+ R P A +L+ + ++ GL P ++ + AL+ G V EA+ ++ E L
Sbjct: 232 SDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFL 291
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + + L+ Y RI ++D++S YS + + + G+ E
Sbjct: 292 AGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWE 351
Query: 167 LMENTLKEMVSRGFSVDSATGNAFII-------YYSRFGSLTEMETAYGRLKRSRH--LI 217
LKEM + G S + + + F L EM+ + R R + +I
Sbjct: 352 SARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMI 411
Query: 218 DKEGIRAVSFTYLKERKFFMLGEFL------RDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
D G K+ LG + R+ G+ D+ + WN L+ ++ +
Sbjct: 412 DTFG------------KYNCLGHAMDAFNKMREEGI-EPDV--VTWNTLIDAHCKGGRHD 456
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
F M E+ P TT+NI + + L MK + + P+++TY +V
Sbjct: 457 RAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLV 516
Query: 332 DAY 334
D Y
Sbjct: 517 DVY 519
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 135/292 (46%), Gaps = 16/292 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++LV L +K A +LVN + ++G P+ +T L+ + G + EA ++ E+L+
Sbjct: 386 STLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLT 445
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
F L+ + L+ A + G +E + + ++S + P++++ FG +++
Sbjct: 446 KGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCK--PDIFTFNSLIFG-LCRVDE 502
Query: 168 MENTL---KEMVSRGFSVDSATGNAFIIYYSRFGSLTE-METAYGRLKRSRHL--IDKEG 221
ME+ L ++MV G +S T N I + R G + E ++ L R L I G
Sbjct: 503 MEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNG 562
Query: 222 -IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR- 279
I+A+ T E+ + E +R GL + N+L+ + K+ + EFMR
Sbjct: 563 LIKALCKTGAVEKGLGLFEEMIRK-GLTPSI---ITCNILINGFCTAGKVHN-ALEFMRD 617
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M GF PD+ T+N + + E ++ E + PD +TY ++
Sbjct: 618 MIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLI 669
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 128/320 (40%), Gaps = 50/320 (15%)
Query: 61 HLAHQLVNTVK---SEGLL-----PDNSTLCALMLCYANNGFVLEAQV-VWEELLSSSFV 111
+L H L T + ++ LL P+ L+ + NG + EA V+++++++ +V
Sbjct: 320 YLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYV 379
Query: 112 LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENT 171
V S L++ + G F + +++ + + Y+ I F K+GQLE
Sbjct: 380 PDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLI 439
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR-------------------LKR 212
L+EM+++GFS+++ NA I + G + E +G L R
Sbjct: 440 LREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCR 499
Query: 213 SRHLIDK---------EGIRAVSFTY-LKERKFFMLGE------FLRDVGLGRKDLGNLL 256
+ D EG+ A S T+ F GE + D+ L +
Sbjct: 500 VDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEIT 559
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+N L+ + ++ F M G P + T NI F +H +LE M+
Sbjct: 560 YNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAG---KVHNALEFMR 616
Query: 317 ---HESVGPDLVTYGCVVDA 333
H PD+VTY +++
Sbjct: 617 DMIHRGFSPDIVTYNSLING 636
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 34/237 (14%)
Query: 27 KNGDL--ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K G L A I+R +GF V +L+ L + K H A + + S+G PD
Sbjct: 429 KKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIF 488
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T +L+ + +A ++ +++ + + + L+ A+ R G E + +++ +
Sbjct: 489 TFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDM 548
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG-- 198
R L Y+ I K G +E +EM+ +G + T N I + G
Sbjct: 549 LFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKV 608
Query: 199 -----------------------SLTEMETAYGRLKRSRHLIDK---EGIRAVSFTY 229
SL GR++ + +L +K EGI+ S TY
Sbjct: 609 HNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITY 665
>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
Length = 668
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 121/303 (39%), Gaps = 31/303 (10%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-L 106
+ L+ R P A +L+ + ++ GL P ++ + AL+ G V EA+ ++ E L
Sbjct: 232 SDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFL 291
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + + L+ Y RI ++D++S YS + + + G+ E
Sbjct: 292 AGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWE 351
Query: 167 LMENTLKEMVSRGFSVDSATGNAFII-------YYSRFGSLTEMETAYGRLKRSRH--LI 217
LKEM + G S + + + F L EM+ + R R + +I
Sbjct: 352 SARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMI 411
Query: 218 DKEGIRAVSFTYLKERKFFMLGEFL------RDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
D G K+ LG + R+ G+ D+ + WN L+ ++ +
Sbjct: 412 DTFG------------KYNCLGHAMDAFNKMREEGI-EPDV--VTWNTLIDAHCKGGRHD 456
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
F M E+ P TT+NI + + L MK + + P+++TY +V
Sbjct: 457 RAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLV 516
Query: 332 DAY 334
D Y
Sbjct: 517 DVY 519
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 40 KQEGFVDC----ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K++G V +LV+ GR + A + +K++GL P + AL+ YA G
Sbjct: 501 KEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLA 560
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YS 153
A V + + + +S+ VL+ L++A+G E S++ + R L P+V Y+
Sbjct: 561 DHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFM--RENGLRPDVITYT 618
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVD 183
+ + Q + + +EM++ G + D
Sbjct: 619 TLMKALIRVEQFDKVPVIYEEMITSGCAPD 648
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158
+ + E+ V ++ + L+D YGR G + E I I+ + P +Y ++
Sbjct: 494 EAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNA 553
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
+ ++G + N +K M + G V N+ I + FG + A+ L+ R
Sbjct: 554 YAQRGLADHALNVVKAMKADGLEVSILVLNSLI---NAFGEDRRVVEAFSVLQFMR---- 606
Query: 219 KEGIRAVSFTY 229
+ G+R TY
Sbjct: 607 ENGLRPDVITY 617
>gi|255685514|gb|ACU28246.1| At4g14190-like protein [Arabidopsis thaliana]
Length = 177
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 80/168 (47%)
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
L+ ME + ++SR +++ +T + + Y+ FG + +ME ++ R +D+ +R
Sbjct: 2 LKRMEQMYQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEVLVRK 61
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
++ Y++ F L + R + R L W L LL +A K L M EA
Sbjct: 62 LANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEAR 121
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ T NI +A+S+M F + L L ++ + V DLVT G V D
Sbjct: 122 VPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFD 169
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/380 (22%), Positives = 157/380 (41%), Gaps = 37/380 (9%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+++++ L + + A L ++ +G+ PD T ++++ + ++G +A+ + +E+L
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
V + L++A+ + G F E + D++ R ++P YS I F KQ +L
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG--IIPNTITYSSMIDGFCKQNRL 376
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE-METAYGRLKRSRHLIDKEGIRA 224
+ E+ M ++G S + T N I Y + + ME H + + G+ A
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELL--------HEMTETGLVA 428
Query: 225 VSFTY-LKERKFFMLGEFLRDVGLGRKDLGNLL------WNLLLLSYAGNFKMKSLQREF 277
+ TY F+++G+ + L ++ + + L + LL N K+K F
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMF 488
Query: 278 MRMSEA-----------GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
M ++ G PD+ T+NI F + E M H + PD +T
Sbjct: 489 KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548
Query: 327 YGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFK 384
Y ++D + RL S + SP V T + + K G E F E
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 608
Query: 385 RQ----RKWTYRKLIAVYLK 400
R+ TY LI + K
Sbjct: 609 RRGIVANAITYITLICGFRK 628
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 127/305 (41%), Gaps = 17/305 (5%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG KK A +L++ ++ +GL P+ T +++L G EA+ V E++S +
Sbjct: 306 LGELKK---ALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPD 362
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
V + L+ + ++G D++ + Y+ I FG+ G++ +N
Sbjct: 363 NVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFH 422
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
EM+SRG D T I Y + G + + + + + + A+ K
Sbjct: 423 EMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHG 482
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLL--LSYAGNFKMK-SLQREFMRMSEAGFHPDLT 290
+ E L ++ L ++N ++ + AGN + L +E M AG PD
Sbjct: 483 ELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKE---MEVAGIDPDAI 539
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL--------DKRLGRN 342
T+ A+ R+ H L+ M + P +VT+ +++ + D+ LG
Sbjct: 540 TYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599
Query: 343 LDFGL 347
L+ G+
Sbjct: 600 LEKGI 604
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 123/306 (40%), Gaps = 22/306 (7%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
++ +L++ G+ K L + + S GL PD T L+ Y G ++ A +
Sbjct: 398 YITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHN 457
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
E++ ++ L+D + G + ++D++ + L +Y+ ++ K G
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+E +KEM G D+ T I Y R G + + K + ++D+ G++
Sbjct: 518 NIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAH------KLLQEMLDR-GLQ 570
Query: 224 AVSFTY-LKERKFFMLGEFLRDVGLGRKDLGNLL----------WNLLLLSYAGNFKMKS 272
T+ + F MLG L D G + LG +L +N L+ + M +
Sbjct: 571 PTVVTFNVLMNGFCMLG-MLED---GDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNT 626
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ + RM G PD T+NI + + + M + P + +Y ++
Sbjct: 627 TTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIK 686
Query: 333 AYLDKR 338
+ K+
Sbjct: 687 RFYKKK 692
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/296 (18%), Positives = 118/296 (39%), Gaps = 20/296 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ L + K A +++ + S+ ++PDN L+ + G V A ++E+LS
Sbjct: 333 SIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSK 392
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ L+ +G+ G E ++ ++ R Y+ I + K G++
Sbjct: 393 KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNA 452
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID---KEGIRAV 225
+ EMV G + + T +G+L + +G L + L+D K+G++
Sbjct: 453 FSLHNEMVQMGMTPNIVT----------YGALIDGLCKHGELDTANELLDEMRKKGLQLN 502
Query: 226 SFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
Y K + ++++ + D + + ++ +Y + +
Sbjct: 503 VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M + G P + TFN+ F + M D L M + + PD +TY ++ +
Sbjct: 563 EMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQH 618
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 26/283 (9%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV-VWEELLSSSFVLSVQVLSDLM 121
A +L++ + S GL+ + A + ANN +E + V+ E S S ++ +
Sbjct: 209 ARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNII---I 265
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRG 179
+ R+G E ++ Q+ R++ P+V YS I + G+L+ + +M +G
Sbjct: 266 YSLCRLGKVKEAHRLLMQMDFRSST--PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKG 323
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
+ T N+ I+ + G E E + + + D V +T L FF LG
Sbjct: 324 LKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDN-----VVYTTLIH-GFFKLG 377
Query: 240 EFLR-----DVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
D L +K + + + L+ + K+ Q F M G PD T+
Sbjct: 378 HVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYT 437
Query: 294 IRAVAFSR---MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + M + LH + M + P++VTYG ++D
Sbjct: 438 TLIDVYCKAGEMVNAFSLHNEMVQM---GMTPNIVTYGALIDG 477
>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 399
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 123/290 (42%), Gaps = 13/290 (4%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G+ K+P A ++ ++S G + T AL+ +A G +A+ V+EE+ + V
Sbjct: 95 GKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDV 154
Query: 115 QVLSDLMDAYGRIG---CFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELME 169
+ LM+AY R G +EI S++ + C P+ Y+ + +G+ G E
Sbjct: 155 YAYNALMEAYSRAGFPQAASEIFSLMQHMGCE-----PDRASYNILVDAYGRAGLHREAE 209
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+ + +G + + + ++R G++ E +L +S D + A+ Y
Sbjct: 210 AVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAY 269
Query: 230 LKERKFFMLGEFLRDVG-LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
+ + + L + G +D+G +N+ + +Y ++ ++ F + G D
Sbjct: 270 GRAGRLDDMERLLAAMERRGTRDVGT--YNVAVNAYGRAGYLERMEAAFASLERRGLAAD 327
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+ T+ R A++R + E M PD T +V A D+R
Sbjct: 328 VVTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVLVAACSDER 377
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 40/254 (15%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P A ++ + ++ G PD ++ L+ Y G EA+ V+E L
Sbjct: 159 ALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQ 218
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLE 166
+++ L+ A+ R G ++ Q+ + L P+ + ++ +G+ G+L+
Sbjct: 219 GMAPTMKSHMLLLAAHARSGNVARCEEVMAQL--HKSGLAPDTIALNAMLNAYGRAGRLD 276
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
ME L M RG + D T N + Y R G L ME A+ L+R G+ A
Sbjct: 277 DMERLLAAMERRG-TRDVGTYNVAVNAYGRAGYLERMEAAFASLER-------RGLAA-- 326
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
DV + W + +YA + + F M +AG +
Sbjct: 327 -----------------DV---------VTWTSRMGAYARKKEYRRCLEIFEEMVDAGCY 360
Query: 287 PDLTTFNIRAVAFS 300
PD T + A S
Sbjct: 361 PDAGTAKVLVAACS 374
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/342 (19%), Positives = 130/342 (38%), Gaps = 18/342 (5%)
Query: 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135
+P T L+ Y G + A+ V E+ S V + +D + C + +
Sbjct: 11 VPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVE 70
Query: 136 IIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
+ ++ E Y+ I+ +GK Q KEM S G + T A + ++
Sbjct: 71 VYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFA 130
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK---ERKFFMLGEFLRDVGLGRKDL 252
R G + E + ++++ H D A+ Y + + + ++ +G +
Sbjct: 131 REGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGC---EP 187
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+N+L+ +Y + + F + G P + + + A +R +
Sbjct: 188 DRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVM 247
Query: 313 EHMKHESVGPDLVTYGCVVDAYLDKRLGR--NLDFGLSKMNLDDSPVVSTDPYVFEAFGK 370
+ + PD + +++AY R GR +++ L+ M + V T A+G+
Sbjct: 248 AQLHKSGLAPDTIALNAMLNAY--GRAGRLDDMERLLAAMERRGTRDVGTYNVAVNAYGR 305
Query: 371 GDFHSSSE-AFLEFKRQR------KWTYRKLIAVYLKKQLRR 405
+ E AF +R+ WT R + A KK+ RR
Sbjct: 306 AGYLERMEAAFASLERRGLAADVVTWTSR-MGAYARKKEYRR 346
>gi|413953500|gb|AFW86149.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
Length = 1039
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 131/327 (40%), Gaps = 13/327 (3%)
Query: 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102
G + L+ L R+ A + + + G PD+S + L++ Y + AQ ++
Sbjct: 606 GLSSVSLLISRLAREGSTDEARFIYDQLTELGTKPDDSAVATLIVQYGQAKQLERAQELF 665
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIG----CFNEIISIIDQVSCRNADLLPEVYSRAISC 158
+ S+SF V + ++DA+ + G ++ + + DQ S RNA S ++
Sbjct: 666 DSA-SASFPDGALVCNAMVDAFCKCGRAEDAYHLFMEMADQGSYRNA----VTASILVTH 720
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
K G+ + +EN + +D+A N FI G L + Y R+ S
Sbjct: 721 LTKHGKFQEVENIMHGCFRDEVQLDTALYNTFIKSMLESGKLHSAVSIYDRMVSSGVSQS 780
Query: 219 KEGIRAVSFTYLKERKFFMLGE-FLRDVGLGRKDLGNLLWNLL-LLSYAGNFKMKSLQRE 276
+ + Y K K E F LG + N+L L AG + SL
Sbjct: 781 MQTFNTMISVYGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEASLM-- 838
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F RM E G P +FN A++ +F + + M+ PD +Y ++ AY +
Sbjct: 839 FKRMKEDGIRPGKISFNSMINAYATSGLFSEAKSVFQEMQDCGHAPDSFSYLALIRAYTE 898
Query: 337 KRLGRNLDFGLSKMNLDDSPVVSTDPY 363
+L + + M L S + P+
Sbjct: 899 AKLYTEAEEAIRTMTLSSSNTTPSCPH 925
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/202 (18%), Positives = 88/202 (43%), Gaps = 2/202 (0%)
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
+G + A +++ ++SS S+Q + ++ YG+ G ++ + + + +
Sbjct: 758 ESGKLHSAVSIYDRMVSSGVSQSMQTFNTMISVYGKGGKLDKAVEMFAAAQELGLPIDEK 817
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+Y+ +S +GK G+ + K M G + N+ I Y+ G +E ++ + +
Sbjct: 818 MYTNMLSLYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLFSEAKSVFQEM 877
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL--WNLLLLSYAGNF 268
+ H D A+ Y + + + E +R + L + ++ L+L++
Sbjct: 878 QDCGHAPDSFSYLALIRAYTEAKLYTEAEEAIRTMTLSSSNTTPSCPHFSHLILAFLKEG 937
Query: 269 KMKSLQREFMRMSEAGFHPDLT 290
++ +R + +M E G PDL
Sbjct: 938 RVGEARRIYGQMMEVGVAPDLA 959
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 130/312 (41%), Gaps = 15/312 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+LV L R+K+ L++ V G+ PD+ L A++ ++ +G V EA +++++
Sbjct: 61 TTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKE 120
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+ + L+ +G G E + +++ + ++ ++ P Y+ I + + +L
Sbjct: 121 YGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMG-QDENVKPNDRTYNILIQAWCTKKKL 179
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E N L +MV+ G D T N Y++ G E E A + + + I K R
Sbjct: 180 EEAWNVLHKMVASGIQPDVVTYNTMARAYAQNG---ETERAERLILKMPYNIVKPNERTC 236
Query: 226 SFT---YLKERKFFMLGEFL---RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
Y KE FL +++G+ D +++N L+ Y +
Sbjct: 237 GIIISGYCKEGNMPEALRFLYRMKELGV---DPNPVVFNSLIKGYLDTTDTNGVDEALTL 293
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
M E G PD+ TF+ A+S + + M + PD+ Y + Y+
Sbjct: 294 MEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQ 353
Query: 340 GRNLDFGLSKMN 351
R + L+ M+
Sbjct: 354 PRKAEALLTSMS 365
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/288 (18%), Positives = 109/288 (37%), Gaps = 6/288 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ KKK A +++ + + G+ PD T + YA NG A+ + ++ +
Sbjct: 169 LIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKMPYNI 228
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + ++ Y + G E + + ++ D P V++ I + ++
Sbjct: 229 VKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVD 288
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L M G D T + + +S G + E + + ++ D ++ Y
Sbjct: 289 EALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGY 348
Query: 230 LK---ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
++ RK L + G+ +++ ++ + KM R +M E G
Sbjct: 349 VRAGQPRKAEALLTSMSKYGV---QPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTS 405
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
P+L T+ + W L M+ V P++ T V DA+
Sbjct: 406 PNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEMSTMQLVADAW 453
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 123/285 (43%), Gaps = 20/285 (7%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L ++ + A +L+N +K G+ PD T L+ Y +G +A +++ LL
Sbjct: 372 TLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQ 431
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
V + L+D R G + + D + R ++ P YS I ++GQ+E
Sbjct: 432 RLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAR--EIFPNHVTYSILIDSHCEKGQVE 489
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L EMVS+G + T N+ I Y R G++ + + ++ + L D +
Sbjct: 490 EAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLI 549
Query: 227 FTYLKERKFFMLGEF----LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
Y+KE M G F + + + + D + +N+++ ++ M+ R F +M
Sbjct: 550 HGYIKEEN--MHGAFNVFNIMEKEMVQPDA--VTYNMIINGFSEQGNMEEAGRVFKKMGA 605
Query: 283 AGFHPDLTTF----NIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+G PD T+ N A + F LH + M H PD
Sbjct: 606 SGIEPDRYTYMSLINGHVTAGNSKEAF-QLH---DEMMHRGFAPD 646
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/381 (21%), Positives = 142/381 (37%), Gaps = 65/381 (17%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFV-DCAS---LVEDLGRKK 58
TF+ L G K +RF D A+++ R Q D S L+ R
Sbjct: 229 TFNSVLKGLCKHRRF------------DKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVG 276
Query: 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
+ A + ++ G+ PD + L+ ++ G + A E+ V + +
Sbjct: 277 EVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYT 336
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMV 176
++ + R G +E + + D++ LP+V Y+ ++ KQ +L E L EM
Sbjct: 337 MVIGGFCRAGSMSEALRVRDEMV--GLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMK 394
Query: 177 SRGFSVDSATGNAFIIYYSRFG-------------------------SLTEMETAYGRLK 211
RG + D T I Y R G SL + G L
Sbjct: 395 ERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLA 454
Query: 212 RSRHLIDKEGIRA-----VSFTYL---------KERKFFMLGEFLRDVGLGRKDLGNLL- 256
++ L D R V+++ L E F L E + + +L N++
Sbjct: 455 KANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMV-----SKGNLPNIMT 509
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+N ++ Y + +K Q+ +M + PDL TFN + + M+
Sbjct: 510 YNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIME 569
Query: 317 HESVGPDLVTYGCVVDAYLDK 337
E V PD VTY +++ + ++
Sbjct: 570 KEMVQPDAVTYNMIINGFSEQ 590
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 106/278 (38%), Gaps = 6/278 (2%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
PHLA + V S + TL ++ Y + +A V E+ V +
Sbjct: 138 PHLAEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNV 197
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVS 177
L+DA R G + I+++D ++ N L P + ++ + K + + + + M
Sbjct: 198 LIDARFRAGDVDAAIALVDSMA--NKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQ 255
Query: 178 RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM 237
+ D + N I + R G + E Y +++ D + + K
Sbjct: 256 CSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDH 315
Query: 238 LGEFLRDV-GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
+LR++ GLG G +++ +++ + M R M G PD+ T+N
Sbjct: 316 AAAYLREMKGLGLVPDG-VIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLL 374
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ D L MK V PDL T+ ++ Y
Sbjct: 375 NGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGY 412
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 107/278 (38%), Gaps = 41/278 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A LV+++ ++GL P T +++ + +A+ V+ + S V+ + L+
Sbjct: 211 AIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIG 270
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ R+G E + ++ R + P+V +S I F +G+++ L+EM G
Sbjct: 271 GFCRVGEVEEAMKFYKEMQQRG--VTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGL 328
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
D I + R GS++ E +R
Sbjct: 329 VPDGVIYTMVIGGFCRAGSMS------------------EALR----------------- 353
Query: 241 FLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+RD +G L +++ +N LL ++ + M E G PDL TF +
Sbjct: 354 -VRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGY 412
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
R F + + H+ + PD+V Y ++D K
Sbjct: 413 CRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRK 450
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 111/279 (39%), Gaps = 39/279 (13%)
Query: 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
+P+LA QL+N V+ G+ PD T L+ + + EA V+ ++ S + +
Sbjct: 301 EPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYN 360
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMV 176
++ YGR + + ++ + P+ Y+ + F ++G E + + +EMV
Sbjct: 361 AMISVYGRCARARKAEELFKELESKG--FFPDAVTYNSLLYAFSREGNTEKVRDICEEMV 418
Query: 177 SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF 236
RGF D T N I Y + G + Y +K S D AV++T L +
Sbjct: 419 KRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPD-----AVTYTVLID---- 469
Query: 237 MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
LG+ K++ M +AG P L T++
Sbjct: 470 ---------SLGKAS-----------------KVEEAANVMSEMLDAGVKPTLHTYSALI 503
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
A+++ + + M+ + PD + Y ++D +L
Sbjct: 504 CAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFL 542
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 117/301 (38%), Gaps = 47/301 (15%)
Query: 38 YRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLE 97
+R Q +++ GR + A +L ++S+G PD T +L+ ++ G +
Sbjct: 350 HRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEK 409
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRA 155
+ + EE++ F + ++ YG+ G ++ + I + S RN D + Y+
Sbjct: 410 VRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAV--TYTVL 467
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I GK ++E N + EM+ G T +A I Y++ G E E + ++RS
Sbjct: 468 IDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRS-- 525
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
GI+ Y ML FLR +N +MK
Sbjct: 526 -----GIKPDRLAY-----SVMLDFFLR-------------FN----------EMKKAMG 552
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL-------HLSLEHMKHESVGPDLVTYG 328
+ M GF PD + + A R +M WD+ L M + + LV G
Sbjct: 553 LYHEMIREGFTPDNGLYEVMMHALVRENM-WDVVDRIIRDMEELSGMNPQVISSVLVKGG 611
Query: 329 C 329
C
Sbjct: 612 C 612
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/312 (19%), Positives = 120/312 (38%), Gaps = 39/312 (12%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + NT+ +G P ++ L+ + + E VV +EL +S + ++
Sbjct: 828 ARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLE 887
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
A+ + G E+ I + + + A P VY + K ++ +E L EM GF
Sbjct: 888 AFAQAGNLFEVQKIYNGM--KAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGF 945
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FM 237
D N+ + Y M Y +++ + D+E + Y ++R+ F
Sbjct: 946 QPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFS 1005
Query: 238 LGEFLRDVGLGRK--------------------------------DLGNLLWNLLLLSYA 265
L +R +GL K L ++L++ +Y
Sbjct: 1006 LMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYR 1065
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+ + + M E+G P ++T ++ V++ + + L++++ V D +
Sbjct: 1066 TSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTL 1125
Query: 326 TYGCVVDAYLDK 337
Y V+DAYL K
Sbjct: 1126 PYSSVIDAYLKK 1137
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 85/233 (36%), Gaps = 45/233 (19%)
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
SS +VQV + +M Y R G F+++ ++D + R +P++ ++ I+ K G +
Sbjct: 243 SSVGDTVQVYNAMMGVYARNGRFSKVKELLDLM--RERGCVPDLVSFNTLINARMKSGAM 300
Query: 166 E--LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
E L L E+ G D T N I SR +L E + ++ R D
Sbjct: 301 EPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPD----- 355
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW--NLLLLSYAGNFKMKSLQREFMRMS 281
LW N ++ Y + + + F +
Sbjct: 356 --------------------------------LWTYNAMISVYGRCARARKAEELFKELE 383
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
GF PD T+N AFSR + E M G D +TY ++ Y
Sbjct: 384 SKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMY 436
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 11/160 (6%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
R ++P L+N ++S GL P T +L+ + +A+ ++EEL S+ + L
Sbjct: 996 RDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRA 1055
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMENTLK 173
+M Y G + +++ + + + P + + + +GK GQ E EN LK
Sbjct: 1056 FYHLMMKTYRTSGDHRKAENLL--AIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLK 1113
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFG-------SLTEMETA 206
+ + G +D+ ++ I Y + G LTEM+ A
Sbjct: 1114 NLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEA 1153
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 107/285 (37%), Gaps = 35/285 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ R+ A + + ++S PD T A++ Y +A+ +++EL S
Sbjct: 326 TLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESK 385
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F + L+ A+ R G ++ I +++ R Y+ I +GKQG+ +
Sbjct: 386 GFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQA 445
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
++M S G + D+ T + + G +++E A + ++D G++ T
Sbjct: 446 MQIYRDMKSSGRNPDAVT---YTVLIDSLGKASKVEEAANVMS---EMLDA-GVKPTLHT 498
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y + L+ +YA K + + F M +G PD
Sbjct: 499 Y----------------------------SALICAYAKAGKREEAEETFNCMRRSGIKPD 530
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+++ F R + M E PD Y ++ A
Sbjct: 531 RLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHA 575
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 65/333 (19%), Positives = 118/333 (35%), Gaps = 52/333 (15%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
P AH L+ + G++ DN + V D
Sbjct: 753 PETAHHLLYHAEKNGIILDN---------------------------------DISVYID 779
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
+++ YG++ + + S++ + R + + +V++ I + G E M+ G
Sbjct: 780 IVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRDG 839
Query: 180 FS--VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM 237
S VDS G + R L E+ L+ I K I + + F
Sbjct: 840 PSPTVDSVNGLLQALIVDR--RLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFE 897
Query: 238 LGEFLRDVGLGRKDLGNL----LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+ + G K G ++ ++L +++ ++ M EAGF PDL N
Sbjct: 898 VQKIYN----GMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICN 953
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN-- 351
+ + F + + + ++ S+ PD TY ++ Y R + G S MN
Sbjct: 954 SILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCR---DRRPEEGFSLMNKM 1010
Query: 352 --LDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
L P + T + AF K + +E E
Sbjct: 1011 RSLGLEPKLDTYRSLITAFNKQRMYEQAEELFE 1043
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 131/309 (42%), Gaps = 35/309 (11%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+++++ L + + AH L ++ +G+ PD T ++ + ++G EAQ + +E+L
Sbjct: 253 SAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLE 312
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+V S L++AY + F E + D++ R ++P Y+ I F KQ +L
Sbjct: 313 RKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRG--IIPNTITYNSMIDGFCKQNRL 370
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYS---RFGSLTEMETAYGRLKRSRHLIDKEGI 222
+ E+ M ++G S D T N I Y R TE+ H + + G+
Sbjct: 371 DAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTEL----------LHEMTETGL 420
Query: 223 RAVSFTY-LKERKFFMLGEFLRDVGLGRKDLGN------LLWNLLLLSYAGNFKMKSLQR 275
A + TY F ++G+ + L ++ + + + N LL N K+K
Sbjct: 421 VADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 480
Query: 276 EFMRMSEA-----------GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
F M ++ G PD+ T+NI F + + M H + P+
Sbjct: 481 MFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNT 540
Query: 325 VTYGCVVDA 333
+TY +++
Sbjct: 541 ITYSSMING 549
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
+ M E G PDL T+N F + + L+ M + P++VTY +++AY+
Sbjct: 272 YTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVK 331
Query: 337 KR 338
+R
Sbjct: 332 ER 333
>gi|255685436|gb|ACU28207.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685446|gb|ACU28212.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685448|gb|ACU28213.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685450|gb|ACU28214.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685452|gb|ACU28215.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685458|gb|ACU28218.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685460|gb|ACU28219.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685466|gb|ACU28222.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685470|gb|ACU28224.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685474|gb|ACU28226.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685478|gb|ACU28228.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685492|gb|ACU28235.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685498|gb|ACU28238.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685500|gb|ACU28239.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685502|gb|ACU28240.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685508|gb|ACU28243.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685510|gb|ACU28244.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685512|gb|ACU28245.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685516|gb|ACU28247.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685518|gb|ACU28248.1| At4g14190-like protein [Arabidopsis thaliana]
gi|255685520|gb|ACU28249.1| At4g14190-like protein [Arabidopsis thaliana]
Length = 177
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 80/168 (47%)
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
L+ ME + ++SR +++ +T + + Y+ FG + +ME ++ R +D+ +R
Sbjct: 2 LKRMEQMYQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRK 61
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
++ Y++ F L + R + R L W L LL +A K L M EA
Sbjct: 62 LANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEAR 121
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ T NI +A+S+M F + L L ++ + V DLVT G V D
Sbjct: 122 VPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFD 169
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/347 (21%), Positives = 134/347 (38%), Gaps = 54/347 (15%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
CA LV L R ++ A +++ ++ P S L+ A A + ++
Sbjct: 150 CADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQ 209
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRAISCFGKQGQ 164
+ + V + + L+ A R G ++++D+V SC D++ +Y+ I CFGK G
Sbjct: 210 EVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIV--LYNVCIDCFGKAGN 267
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+++ E+ S+G D + + I + G L+E E +G+++ R +
Sbjct: 268 VDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNT 327
Query: 225 VSFTY---------------LKER----KFFMLGEFLRDVGLGRK--------------- 250
+ Y LKER L +G RK
Sbjct: 328 MIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDA 387
Query: 251 DLGNLLWNLL--LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
+ + +N++ +L AG + + R+ M AG P+L T NI + F
Sbjct: 388 EPNSSTYNIIIDMLCMAGKVEEAYMIRD--EMEHAGLFPNLLTVNIMVDRLCKAKKFEPA 445
Query: 309 HLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS 355
+ E P+ VTY ++D LG+ K N+DD+
Sbjct: 446 YEMFETASQRGCNPNSVTYCSLIDG-----LGK-------KGNVDDA 480
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 58/293 (19%), Positives = 111/293 (37%), Gaps = 35/293 (11%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
GRK+ H++ + G PD + L M C G V + + ++E++ F+ V
Sbjct: 510 GRKED---GHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDV 566
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKE 174
+ S L+ + G E SI + + L Y+ + F K G+L+ L+E
Sbjct: 567 RSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEE 626
Query: 175 MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234
M + AT +GS+ + RL + L ++ + + E
Sbjct: 627 MKVKRVPPTVAT----------YGSIIDGLAKIDRLDEAYMLFEEAKSKGI------ELN 670
Query: 235 FFMLGEFLRDVG-LGRKDLGNLL---------------WNLLLLSYAGNFKMKSLQREFM 278
+ + G +GR D L+ WN L+ + ++ F
Sbjct: 671 VIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQ 730
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M E P+ T++I R+ + + + M+ + + P++VTY ++
Sbjct: 731 SMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMI 783
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 127/319 (39%), Gaps = 31/319 (9%)
Query: 32 ARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL-- 85
A K++ K+ G + S++ LG+K+K A L +K + P++ST +
Sbjct: 341 AYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAE-PNSSTYNIIID 399
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
MLC A G V EA ++ +E+ + ++ ++ ++D + F + + S R
Sbjct: 400 MLCMA--GKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGC 457
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+ Y I GK+G ++ + M+ G NA + Y+ SL
Sbjct: 458 NPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGH-------NANPVVYT---SLIRNFF 507
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF-LRDVGLGR------KDLGNLL-- 256
+GR K H I KE R L +M F DV GR K G L
Sbjct: 508 MHGR-KEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDV 566
Query: 257 --WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+++L+ + + F M + GF D +N F + + LE
Sbjct: 567 RSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEE 626
Query: 315 MKHESVGPDLVTYGCVVDA 333
MK + V P + TYG ++D
Sbjct: 627 MKVKRVPPTVATYGSIIDG 645
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Query: 27 KNGDL--ARKIIRYRKQEGFV-DCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K GD+ R I K GF+ D S L+ L + + + + +K +G D
Sbjct: 543 KAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDAR 602
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
A++ + +G + +A V EE+ +V ++D +I +E + ++
Sbjct: 603 AYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEA 662
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ +L VYS I FGK G+++ L+EM+ +G + + T N+ +
Sbjct: 663 KSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLM 713
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 61/328 (18%), Positives = 126/328 (38%), Gaps = 53/328 (16%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V+ L + KK A+++ T G P++ T C+L+ G V +A ++E +L +
Sbjct: 432 MVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTG 491
Query: 110 FVLSVQVLSDLMDAY----------------GRIGCFNEIISIIDQVSC----------- 142
+ V + L+ + R GC ++ + + C
Sbjct: 492 HNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGR 551
Query: 143 ------RNADLLPEVYSRAISCFG--KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ LP+V S +I G K GQ + M +GF++D+ NA + +
Sbjct: 552 AIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGF 611
Query: 195 SRFGSLTEMETAYGRLKRSR---------HLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
+ G L + +K R +ID G+ + + + +ML E +
Sbjct: 612 CKSGKLDKAYEVLEEMKVKRVPPTVATYGSIID--GLAKID----RLDEAYMLFEEAKSK 665
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
G+ +L ++++ L+ + ++ M + G P++ T+N A +
Sbjct: 666 GI---ELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEI 722
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + + MK P+ TY +++
Sbjct: 723 NEALICFQSMKEMKCSPNTYTYSILING 750
>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like, partial [Cucumis sativus]
Length = 602
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 129/312 (41%), Gaps = 10/312 (3%)
Query: 30 DLARKIIRYRKQEGF-VD---CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D + ++ Y +++GF +D C + L R L + + + G+ + A+
Sbjct: 135 DSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAV 194
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI---GCFNEIISIIDQVSC 142
+ G V+ A+ + +EL+ F SV + L++ Y I G NEI+S++++
Sbjct: 195 VDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEK--- 251
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
D Y+ I + + ++E E EM+ +G D + I + +FG++
Sbjct: 252 NVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKR 311
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+ + R + + A+ K + + D+ D+ +++N L+
Sbjct: 312 AFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMD 371
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
Y + R M + GF D T NI A F R + + L M+ V P
Sbjct: 372 GYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAP 431
Query: 323 DLVTYGCVVDAY 334
++V++ ++D Y
Sbjct: 432 NVVSFSILIDIY 443
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 116/280 (41%), Gaps = 19/280 (6%)
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
+T L+ Y+ + + EA+ +++E+L V + + +++ + G + D+
Sbjct: 259 TTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDE 318
Query: 140 VSCRNADLLPEVYSRA--ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
++ R L+P Y+ I+ K G+++ E + +M S+G V+ N + Y +
Sbjct: 319 MTERR--LVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKK 376
Query: 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK-----ERKFFMLGEFLRDVGLGRKDL 252
G + E +++ ID ++ + + E K +L R V
Sbjct: 377 GMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVA------ 430
Query: 253 GNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
N++ +++L+ Y +R F M + G P + T+N + + + +
Sbjct: 431 PNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKL 490
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
+ M+ + PD TY ++D +R N+D L N
Sbjct: 491 INEMQERGLMPDTYTYTSLIDG---ERASGNVDRALELFN 527
>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 794
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 146/370 (39%), Gaps = 32/370 (8%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V+ L ++ K +L+ G +P+ L+ Y G A V+++EL
Sbjct: 178 MVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKG 237
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
F+ +V+ +++ + + G F + ++ ++S R D+ +Y+ I K G
Sbjct: 238 FLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAA 297
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+T+ M+ G D AT N I G + + E + + L +K + Y
Sbjct: 298 DTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNY 357
Query: 230 LKERKFFMLGEFLRDVGL--------GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
K+ GE+LR + L + DL + L AG + R +M
Sbjct: 358 CKQ------GEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRN--KMV 409
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
E G PD +N+ + + L M ++V PD +VD ++ R
Sbjct: 410 EKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFI-----R 464
Query: 342 NLDFGLSKMNLDDSPVVSTDPYV--FEAFGKG--DFHSSSEAFLEFKRQ-------RKWT 390
+ DF +K + + DP V + A KG F +A L FKR ++T
Sbjct: 465 HGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFT 524
Query: 391 YRKLIAVYLK 400
Y +I Y+K
Sbjct: 525 YSTIIDGYIK 534
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 73/343 (21%), Positives = 127/343 (37%), Gaps = 50/343 (14%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL K+ + V A+L+ L + +A + N + +G+LPD + LM
Sbjct: 368 DLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGL 427
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
G + A+V+ E+L + + + L+D + R G F E
Sbjct: 428 CKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEE----------------- 470
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+L E T+++ + G NA I Y +FG + + + R
Sbjct: 471 --------------AKKLFELTIEKGIDPGV----VGYNAMIKGYCKFGMMKDALLCFKR 512
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL---GRKDLGNLLWNLLLLSYAG 266
+ + H D+ + Y+K L LR GL G + + LL+ +
Sbjct: 513 MIQGLHSPDEFTYSTIIDGYIKMND---LHGALRMFGLMVKGACKPNVVTYTLLINGFCL 569
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ + ++ F +M P++ T+ I F + E M E P+ VT
Sbjct: 570 SGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVT 629
Query: 327 YGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFG 369
Y YL L N+DF +S + + + V E+FG
Sbjct: 630 YN-----YLMNGLTNNVDFVISNQRSEQ----TENSLVLESFG 663
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 141/324 (43%), Gaps = 26/324 (8%)
Query: 27 KNGDL--ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K G L AR+ I + + GF V +++ + A ++++ ++ +G+ PD+
Sbjct: 239 KEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY 298
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T +L+ G + EA ++++++ V + + L+D Y G S D++
Sbjct: 299 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 358
Query: 141 SCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+ ++P V Y+ + +G++ ++ +KEM +G D+ T N I YSR G
Sbjct: 359 VKKG--IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 416
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM-----LGEFLRDVGLGRKDLG 253
+ + + + I+ + S Y+ R+ M L E + D G+ D+
Sbjct: 417 NAKKAFDLHNEMLSKG--IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS-PDV- 472
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFM---RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+++N ++ + N +++R FM M PD TFN R + +
Sbjct: 473 -IMFNAMVDGHCAN---GNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARM 528
Query: 311 SLEHMKHESVGPDLVTYGCVVDAY 334
L+ MK + PD ++Y ++ Y
Sbjct: 529 LLDEMKRRGIKPDHISYNTLISGY 552
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+ + + + PD T LM G V EA+++ +E+ + L+
Sbjct: 491 AFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLIS 550
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
YGR G + + D++ + Y+ I C K + +L E LKEMV++G S
Sbjct: 551 GYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISP 610
Query: 183 DSAT 186
D +T
Sbjct: 611 DDST 614
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL +++ + V SL+ L R+ + A L + +G+ PD A++ +
Sbjct: 423 DLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGH 482
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
NG V A ++ +E+ S + LM R G E ++D++ R
Sbjct: 483 CANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDH 542
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
Y+ IS +G++G ++ EM+S GF+ T NA I
Sbjct: 543 ISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALI 584
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 134/317 (42%), Gaps = 16/317 (5%)
Query: 32 ARKIIRYRK-QEGFVD---CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A +++R K Q F D +L+ G+ + ++L + +K + ++PD T +++
Sbjct: 341 AEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIH 400
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
G V+EA+ ++ E+LS + L+D Y + G E S+ +Q+ L
Sbjct: 401 GLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMV--EKGL 458
Query: 148 LPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
P V Y+ + K G++++ L EM +G + T NA I + G++ +
Sbjct: 459 TPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVK 518
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR---DVGLGRKDLGNLLWNLLLL 262
+ + D + Y K + E LR D GL + +N+L+
Sbjct: 519 LMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTI---VTFNVLMN 575
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS-RMSMFWDLHLSLEHMKHESVG 321
+ + ++ +R M + G P+ TTFN + R +M + + + M + V
Sbjct: 576 GFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEI-YKGMHAQGVV 634
Query: 322 PDLVTYGCVVDAYLDKR 338
PD TY ++ + R
Sbjct: 635 PDTNTYNILIKGHCKAR 651
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 120/295 (40%), Gaps = 14/295 (4%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
VD VE LG+ K L+ ++ +GL P+ T +++ G V+EA+ V
Sbjct: 293 IVDGYCQVEQLGKVLK------LMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLR 346
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGK 161
+ + V + L+ +G+ G + + D++ + ++P+ Y+ I +
Sbjct: 347 VMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEM--KRKKIVPDFVTYTSMIHGLCQ 404
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
G++ EM+S+G D T A I Y + G + E + + ++ +
Sbjct: 405 AGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVT 464
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL--LSYAGNFKMKSLQREFMR 279
A+ K + + E L ++ +N L+ L GN + E M
Sbjct: 465 YTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMD 524
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ AGF PD T+ A+ +M H L M + + P +VT+ +++ +
Sbjct: 525 L--AGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGF 577
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 119/327 (36%), Gaps = 39/327 (11%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
FV S++ L + K A +L + + S+GL PD T AL+ Y G + EA +
Sbjct: 392 FVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHN 451
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGK 161
+++ +V + L+D + G + ++ ++S L P V Y+ I+ K
Sbjct: 452 QMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMS--EKGLQPNVCTYNALINGLCK 509
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME----------------- 204
G +E ++EM GF D+ T + Y + G + +
Sbjct: 510 VGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVT 569
Query: 205 --------TAYGRLKRSRHLID---KEGIRAVSFTYLKERKFFMLGEFLR---DVGLGRK 250
G L+ LI +GI + T+ K + + +R ++ G
Sbjct: 570 FNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMH 629
Query: 251 DLGNL----LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW 306
G + +N+L+ + MK M E GF ++N F + F
Sbjct: 630 AQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFE 689
Query: 307 DLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ E M+ + Y VD
Sbjct: 690 EARKLFEEMRTHGFIAEKEIYDIFVDV 716
>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1508
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/370 (21%), Positives = 148/370 (40%), Gaps = 19/370 (5%)
Query: 27 KNGDLARKIIRYRKQEG---FVDCA---SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K G L + YR + G F C SL+ + + ++ +A QL + ++ G+ P
Sbjct: 694 KAGKLDAALEEYRSRGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRFNGVEPSEC 753
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVL---SVQVLSDLMDAYGRIGCFNEIISII 137
+++ Y GF AQ + + +L +V ++ D+++ YG++ + SI+
Sbjct: 754 LYQSMVSVYCRIGFPETAQHLLYHAEKNDIILDNVTVHII-DIIETYGKLKMWQSAESIV 812
Query: 138 DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
+ + R + + +V++ I + G E M+ G S + N +
Sbjct: 813 ENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNGLLQALIVD 872
Query: 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL-- 255
G L+E+ L+ I K I + + + F ++ V G K G
Sbjct: 873 GRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAGNLFE----VQKVYNGMKAAGYFPT 928
Query: 256 --LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
L+ L++ +++ ++ M EAGF PDL FN +S + F ++ + +
Sbjct: 929 MHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQ 988
Query: 314 HMKHESVGPDLVTYGCVVDAYL-DKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGD 372
++ + PD TY ++ Y D R L +L P T + AF K
Sbjct: 989 MIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQ 1048
Query: 373 FHSSSEAFLE 382
+ +E E
Sbjct: 1049 LYDQAEELFE 1058
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 97/244 (39%), Gaps = 39/244 (15%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L +KS G PD T +L+ ++ G + + + EE++ F + ++
Sbjct: 390 AEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIH 449
Query: 123 AYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
YG+ G +E + + + S RN D + Y+ I GK ++E + EM+ G
Sbjct: 450 MYGKHGRHDEALRLYRDMKSSGRNPDAV--TYTVLIDLLGKASKIEEASKVMSEMLDAGV 507
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
T +A I Y++ G E E + R++ S GI+A Y ML
Sbjct: 508 KPTLHTYSALICAYAKVGRRVEAEETFNRMRES-------GIKADHLAY-----SVMLDF 555
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
FLR +N ++K + M EAGF PD + + A
Sbjct: 556 FLR-------------FN----------EIKKAAALYQEMIEAGFTPDTGLYEVMLPALV 592
Query: 301 RMSM 304
R +M
Sbjct: 593 RENM 596
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 20/289 (6%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
LA +L++ V GL PD T L+ + + EA V+ + S+ + + ++
Sbjct: 319 LAIELLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMI 378
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
YGR G + + +++ Y+ + F K+G E + + +EMV GF
Sbjct: 379 SVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFG 438
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
D T N I Y + G E Y +K S D AV++T L + +LG+
Sbjct: 439 KDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPD-----AVTYTVLID----LLGKA 489
Query: 242 LRDVGLGRKDLGNLL----------WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
+ + K + +L ++ L+ +YA + + F RM E+G D
Sbjct: 490 SK-IEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLA 548
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
+++ F R + + M PD Y ++ A + + +G
Sbjct: 549 YSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMG 597
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 133/335 (39%), Gaps = 77/335 (22%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL-CALMLCYANNG--------FVL-- 96
A+++ LG+ + +A ++ K+E ++ D + A+M YA NG F L
Sbjct: 234 ATILSVLGKANQEGIAVEIF--AKAESVIADTVQVYNAMMGVYARNGNFEKVNEMFNLMR 291
Query: 97 ----EAQVVWEELLSSSFVLSVQVLS----DLMDAYGRIGCFNEIISIIDQVS-CRNADL 147
E +V L ++ V S +S +L+D G+ G +II+ +S C
Sbjct: 292 ERGCEPDIVSFNTLINAKVKSCATVSGLAIELLDEVGKFGLRPDIITYNTLISACSRESN 351
Query: 148 LPE------------------VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
L E Y+ IS +G+ G E+ +++ S GFS D+ T N+
Sbjct: 352 LKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNS 411
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
+ +S+ G + E +R +S +K +G G+
Sbjct: 412 LLYAFSKEG-------------------NTEKVRDISEEMVK-------------MGFGK 439
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ + +N ++ Y + + R + M +G +PD T+ + + S +
Sbjct: 440 DE---MTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEAS 496
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
+ M V P L TY ++ AY ++GR ++
Sbjct: 497 KVMSEMLDAGVKPTLHTYSALICAY--AKVGRRVE 529
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 60/341 (17%), Positives = 123/341 (36%), Gaps = 38/341 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + NT+ EG P ++ L+ +G + E VV +EL +S + +++
Sbjct: 843 ARAIFNTMMREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLE 902
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A+ + G E+ + + + +Y I + ++ + L EM GF
Sbjct: 903 AFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKP 962
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLG 239
D N+ + YS M Y ++ + D+E + Y ++ + L
Sbjct: 963 DLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLM 1022
Query: 240 EFLRDVGLGRK--------------------------------DLGNLLWNLLLLSYAGN 267
++ +GL K L ++L++ Y +
Sbjct: 1023 HKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTS 1082
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ + M EAG P+ T ++ V++ + + L++++ D + Y
Sbjct: 1083 GDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPY 1142
Query: 328 GCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAF 368
V+DAYL K + G+ K+ + D ++ F
Sbjct: 1143 SSVIDAYLKKGDAKA---GIEKLTEMKEAAIEPDHRIWTCF 1180
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 148/362 (40%), Gaps = 33/362 (9%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+++++ L + + +H L ++ +G+ P+ T ++ + +G AQ + +E+L
Sbjct: 257 SAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLE 316
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
+V + L++A+ + G F E + D++ R ++P Y+ I F KQ +L
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG--IIPNTITYNSMIDGFCKQDRL 374
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE-METAYGRLKRSRHLIDKEGIRA 224
+ E+ M ++G S D T I Y + + ME H + + G+ A
Sbjct: 375 DAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELL--------HEMPRRGLVA 426
Query: 225 VSFTY-LKERKFFMLGEFLRDVGLGRKDLGN------LLWNLLLLSYAGNFKMKSLQREF 277
+ TY F ++G+ + L ++ + + + N LL N K+K F
Sbjct: 427 NTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 486
Query: 278 MRMSEA-----------GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
M ++ G PD+ T+NI F + E M H + PD +T
Sbjct: 487 KAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTIT 546
Query: 327 YGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFK 384
Y ++D + RL +S + SP V T + + K G E F E
Sbjct: 547 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMG 606
Query: 385 RQ 386
R+
Sbjct: 607 RR 608
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 148/362 (40%), Gaps = 33/362 (9%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+++++ L + + +H L ++ +G+ P+ T ++ + +G AQ + +E+L
Sbjct: 257 SAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLE 316
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
+V + L++A+ + G F E + D++ R ++P Y+ I F KQ +L
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG--IIPNTITYNSMIDGFCKQDRL 374
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE-METAYGRLKRSRHLIDKEGIRA 224
+ E+ M ++G S D T I Y + + ME H + + G+ A
Sbjct: 375 DAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELL--------HEMPRRGLVA 426
Query: 225 VSFTY-LKERKFFMLGEFLRDVGLGRKDLGN------LLWNLLLLSYAGNFKMKSLQREF 277
+ TY F ++G+ + L ++ + + + N LL N K+K F
Sbjct: 427 NTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF 486
Query: 278 MRMSEA-----------GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
M ++ G PD+ T+NI F + E M H + PD +T
Sbjct: 487 KAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTIT 546
Query: 327 YGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFK 384
Y ++D + RL +S + SP V T + + K G E F E
Sbjct: 547 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMG 606
Query: 385 RQ 386
R+
Sbjct: 607 RR 608
>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Cucumis sativus]
Length = 606
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 129/312 (41%), Gaps = 10/312 (3%)
Query: 30 DLARKIIRYRKQEGF-VD---CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D + ++ Y +++GF +D C + L R L + + + G+ + A+
Sbjct: 139 DSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAV 198
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI---GCFNEIISIIDQVSC 142
+ G V+ A+ + +EL+ F SV + L++ Y I G NEI+S++++
Sbjct: 199 VDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEK--- 255
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
D Y+ I + + ++E E EM+ +G D + I + +FG++
Sbjct: 256 NVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKR 315
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+ + R + + A+ K + + D+ D+ +++N L+
Sbjct: 316 AFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMD 375
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
Y + R M + GF D T NI A F R + + L M+ V P
Sbjct: 376 GYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAP 435
Query: 323 DLVTYGCVVDAY 334
++V++ ++D Y
Sbjct: 436 NVVSFSILIDIY 447
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 116/280 (41%), Gaps = 19/280 (6%)
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
+T L+ Y+ + + EA+ +++E+L V + + +++ + G + D+
Sbjct: 263 TTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDE 322
Query: 140 VSCRNADLLPEVYSRA--ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
++ R L+P Y+ I+ K G+++ E + +M S+G V+ N + Y +
Sbjct: 323 MTERR--LVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKK 380
Query: 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK-----ERKFFMLGEFLRDVGLGRKDL 252
G + E +++ ID ++ + + E K +L R V
Sbjct: 381 GMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVA------ 434
Query: 253 GNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
N++ +++L+ Y +R F M + G P + T+N + + + +
Sbjct: 435 PNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKL 494
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
+ M+ + PD TY ++D +R N+D L N
Sbjct: 495 INEMQERGLMPDTYTYTSLIDG---ERASGNVDRALELFN 531
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 141/324 (43%), Gaps = 26/324 (8%)
Query: 27 KNGDL--ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K G L AR+ I + + GF V +++ + A ++++ ++ +G+ PD+
Sbjct: 261 KEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY 320
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T +L+ G + EA ++++++ V + + L+D Y G S D++
Sbjct: 321 TYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 380
Query: 141 SCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+ ++P V Y+ + +G++ ++ +KEM +G D+ T N I YSR G
Sbjct: 381 VKKG--IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 438
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM-----LGEFLRDVGLGRKDLG 253
+ + + + I+ + S Y+ R+ M L E + D G+ D+
Sbjct: 439 NAKKAFDLHNEMLSKG--IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS-PDV- 494
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFM---RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+++N ++ + N +++R FM M PD TFN R + +
Sbjct: 495 -IMFNAMVDGHCAN---GNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARM 550
Query: 311 SLEHMKHESVGPDLVTYGCVVDAY 334
L+ MK + PD ++Y ++ Y
Sbjct: 551 LLDEMKRRGIKPDHISYNTLISGY 574
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+ + + + PD T LM G V EA+++ +E+ + L+
Sbjct: 513 AFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLIS 572
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
YGR G + + D++ + Y+ I C K + +L E LKEMV++G S
Sbjct: 573 GYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISP 632
Query: 183 DSAT 186
D +T
Sbjct: 633 DDST 636
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL +++ + V SL+ L R+ + A L + +G+ PD A++ +
Sbjct: 445 DLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGH 504
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
NG V A ++ +E+ S + LM R G E ++D++ R
Sbjct: 505 CANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDH 564
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
Y+ IS +G++G ++ EM+S GF+ T NA I
Sbjct: 565 ISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALI 606
>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 126/318 (39%), Gaps = 55/318 (17%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS----------------SSFVLSVQ 115
+EG+ PD AL+ Y G +L+A + +++S S L
Sbjct: 325 NEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNLVDQFKEFRDSGIFLDEV 384
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
+ + ++DA ++G E + +++++ R L Y+ I+ + QG+L +N +EM
Sbjct: 385 LYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEM 444
Query: 176 VSRGFSVDSATGNAFIIYYSRFG-------------------------SLTEMETAYGRL 210
RG D T N + +SR G + E G++
Sbjct: 445 KERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKV 504
Query: 211 KRSRHLIDK------EGIRAVSFTYLKE---RKFFMLGEFLRDVGLGRK-----DLGNLL 256
K + ++ E A+ Y K RK + L L G+ R + ++
Sbjct: 505 KEAEAFLNTLEDKCLENYSAMVDGYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIM 564
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+ L+ ++ + MK Q F + E G PD+ T+ + + R++ + MK
Sbjct: 565 YGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMK 624
Query: 317 HESVGPDLVTYGCVVDAY 334
+ PD++TY V+D +
Sbjct: 625 ERGIKPDVITYTVVLDGH 642
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 116/314 (36%), Gaps = 20/314 (6%)
Query: 40 KQEGFV----DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GFV C L+ L K +A + +K GL P++ T + G
Sbjct: 184 KRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNF 243
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
EA V+ E+ + + S ++ + + + N + Y+
Sbjct: 244 EEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAV 303
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL--------------- 200
I F + +L+ E+ +MV+ G + D A I Y + G+L
Sbjct: 304 IRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGI 363
Query: 201 -TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
T + + + S +D+ V K K E L ++ R L + +
Sbjct: 364 KTNLVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTT 423
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
L+ Y K+ + F M E G PD+ T+NI FSR + + L+ + +
Sbjct: 424 LIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQG 483
Query: 320 VGPDLVTYGCVVDA 333
+ P+ T+ +++
Sbjct: 484 LKPNSATHNRIIEG 497
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 63 AHQLVNTVKSEGLL--------PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
A++L + + +G+L P+ L+ + +G + AQ+V++ L+ V
Sbjct: 538 AYELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDV 597
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTL 172
+ +++ Y R+ C E I + + R + P+V Y+ + K L+ N
Sbjct: 598 ITYTMMINGYCRVNCLREARDIFNDMKERG--IKPDVITYTVVLDGHSKTNNLQDAINLY 655
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGS 199
EM++RG D T A + FGS
Sbjct: 656 DEMIARGLQPDIVTYTALLPGKCNFGS 682
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 121/300 (40%), Gaps = 5/300 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVL--SDLMDAYGRIGCFN 131
G +PD + L+ + G +A + + V S V+ S ++D + + G N
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVN 236
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ + ++ R YS + K ++ E L++MV++G ++ T N I
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLI 296
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
YS G E + ++R L D + + + K K + + + ++
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 356
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ ++L YA + + F M G PD+ TFN+ A++ M +
Sbjct: 357 PNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 416
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
M+ V PD+VTY V+ A R+G+ +D + K N V+ D Y + +G
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALC--RIGK-MDDAMEKFNQMIDQGVAPDKYAYHCLIQG 473
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 4/187 (2%)
Query: 27 KNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM 86
K DL +++++ FV +S+V L + + A + + ++G+LP+N T L+
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLI 296
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
Y++ G EA V++E+ S + V LS LM + + G E + D ++ + +
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 356
Query: 147 LLPEVYSRAI--SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
P V+S I + + +G L M + M+ G + D T N I Y+ G L +
Sbjct: 357 --PNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM 414
Query: 205 TAYGRLK 211
+ ++
Sbjct: 415 IIFNEMR 421
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 51/270 (18%), Positives = 110/270 (40%), Gaps = 18/270 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L++ + + G+ D +++ G V++AQ +++ ++ + V S LMD
Sbjct: 483 AKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMD 542
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y +G + + + D + + VY ++ + K G+++ + +EM+ +G
Sbjct: 543 GYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 602
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF----FML 238
+ N I G + + + S ++K V K R F F+
Sbjct: 603 STILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLF 662
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLS--YAGNFKMKSLQRE---FMRMSEAGFHPDLTTFN 293
E LR + N+ N++ L+ AG F+ + ++ F +S +G P + T++
Sbjct: 663 KE-LRAM--------NVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYS 713
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
I + + + M++ PD
Sbjct: 714 IMITNLIKEGLVEEAEDMFSSMQNAGCEPD 743
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 111/263 (42%), Gaps = 4/263 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ PD T +L+ + G A+ + E+++ + + L+DA + G +
Sbjct: 178 GMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMA 237
Query: 134 ISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
I+ ++ +N +LP V YS I + K G+L+ N EM G S+D + N +
Sbjct: 238 FEIMSEMPAKN--ILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLL 295
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
Y++ G E ++ S D A+ Y K+ K+ ++ + ++
Sbjct: 296 SIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVS 355
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
L ++ L+ Y+ + F +AG D+ ++ A + +
Sbjct: 356 PNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSL 415
Query: 312 LEHMKHESVGPDLVTYGCVVDAY 334
L+ M E + P++VTY ++DA+
Sbjct: 416 LDEMTKEGIRPNVVTYNSIIDAF 438
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/381 (19%), Positives = 151/381 (39%), Gaps = 44/381 (11%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+ A K R + ++G + ++++ LGR K +A + +EG A++ Y
Sbjct: 64 EFAVKRERKKNEQGKL-ASAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAY 122
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQ--------- 139
+G+ EA ++ + ++ + ++DA G+ G F ++ I D+
Sbjct: 123 GRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPD 182
Query: 140 ----------------------VSC----RNADLLPEVYSRAISCFGKQGQLELMENTLK 173
+SC R D Y+ + K GQL++ +
Sbjct: 183 RITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMS 242
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
EM ++ + T + I Y++ G L + + +K +D+ + Y K
Sbjct: 243 EMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLG 302
Query: 234 KFFMLGEFLRDV---GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
+F + R++ G+ RKD+ + +N LL Y +K +++ F M P+L
Sbjct: 303 RFEEAMDVCREMENSGI-RKDV--VTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLL 359
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
T++ +S+ ++ + K + D+V Y ++DA L + L +M
Sbjct: 360 TYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 419
Query: 351 NLDD-SPVVSTDPYVFEAFGK 370
+ P V T + +AFG+
Sbjct: 420 TKEGIRPNVVTYNSIIDAFGR 440
Score = 37.7 bits (86), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 29/277 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S+ LGR ++ A + +++ G+ D T AL+ Y + V+EE+ +
Sbjct: 296 SIYAKLGRFEE---AMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKAR 352
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
++ S L+D Y + G + E + + + + A L +V YS I K G +E
Sbjct: 353 HVSPNLLTYSTLIDVYSKGGLYREAMDVFREF--KKAGLKADVVLYSALIDALCKNGLVE 410
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG----- 221
+ L EM G + T N+ I A+GR + ++D G
Sbjct: 411 SAVSLLDEMTKEGIRPNVVTYNSII-------------DAFGRPATTESVVDDAGQTSEL 457
Query: 222 -IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL-LLSYAGNFKMKSLQREFMR 279
I ++S + +++ ++ + R+ K G L +G +M + F +
Sbjct: 458 QIDSLSSSAVEKATKSLVAD--REDNRIIKIFGQLAAEKAGQAKNSGGQEMMCILGVFHK 515
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
M E P++ TF+ A SR + F + + LE ++
Sbjct: 516 MHELEIKPNVVTFSAILNACSRCNSFEEASMLLEELR 552
>gi|302767094|ref|XP_002966967.1| hypothetical protein SELMODRAFT_87107 [Selaginella moellendorffii]
gi|300164958|gb|EFJ31566.1| hypothetical protein SELMODRAFT_87107 [Selaginella moellendorffii]
Length = 311
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 120/269 (44%), Gaps = 13/269 (4%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQV---SCRNADLLPEVYSRAISCFGKQGQLELME 169
SV + ++ + R +++ S++ Q+ ++ L+ + IS +GK G L ME
Sbjct: 11 SVASYNSVLSGFARAHLWSKAESLLAQILHTHRTDSSLVSTSFGLVISSYGKAGMLANME 70
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR--AVSF 227
+ + M++ G S ++T NA I Y + + +ME A + ++ I ++
Sbjct: 71 SLFRCMLNEGCSPSTSTFNAMISVYGKALRIPDMEAALQAMLAEFPGVEPNVITWCCLAD 130
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y + + + L + L ++L + L++ Y +S++R + M +AGF P
Sbjct: 131 AYRRAKLDARVDMALEKLLLKPEELDAKAYGLMVDIYGRRKDFQSVERCYRDMVDAGFKP 190
Query: 288 DLTTF-----NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
D++ + NI A+ + +L+ M+ + + PD TY +V Y R+ R
Sbjct: 191 DVSAWTSMAANIVLDAYGAKGSIRRMEQTLDEMEDDGIEPDSRTYTALVAGYAKARMVRR 250
Query: 343 LDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
++ +M + + D +V+ A G
Sbjct: 251 MESTFLRMRV---ACCAPDEFVYNALIDG 276
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/269 (18%), Positives = 99/269 (36%), Gaps = 42/269 (15%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS--DLMDAYGRIGC 129
+EG P ST A++ Y + + + + +L+ + V++ L DAY R
Sbjct: 78 NEGCSPSTSTFNAMISVYGKALRIPDMEAALQAMLAEFPGVEPNVITWCCLADAYRRAKL 137
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD-----S 184
+ ++++ + +L + Y + +G++ + +E ++MV GF D S
Sbjct: 138 DARVDMALEKLLLKPEELDAKAYGLMVDIYGRRKDFQSVERCYRDMVDAGFKPDVSAWTS 197
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
N + Y GS+ ME + + +GI S TY
Sbjct: 198 MAANIVLDAYGAKGSIRRMEQTLDEM-------EDDGIEPDSRTY--------------- 235
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
L+ YA ++ ++ F+RM A PD +N ++ + M
Sbjct: 236 -------------TALVAGYAKARMVRRMESTFLRMRVACCAPDEFVYNALIDGYASLGM 282
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ L M + +V V+++
Sbjct: 283 VEEAEQKLAEMSRAGLKASVVELTSVLNS 311
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/343 (21%), Positives = 133/343 (38%), Gaps = 31/343 (9%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
++ G P+ T AL+ N G + +AQ ++E ++ + + V + L+ + ++G
Sbjct: 1 MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60
Query: 130 FNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
+E + I D R +P+V Y+ I+ F K +L+ + L+ MVS D T
Sbjct: 61 LDEALKIFDGAVKRG--FVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVT- 117
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL 247
+ SL GR+ +R LI +G TY L LR V
Sbjct: 118 ---------YNSLVNGLCKNGRVDEARMLIVDKGFSPNVITY--STLISGLCRELRGVSE 166
Query: 248 GRKDLGNLL----------WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
K G++L +N+L+ ++ F + + G PD T+ +
Sbjct: 167 ALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 226
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPV 357
+ D L L+ M + PD+V++ V++ ++ + LS M ++
Sbjct: 227 GLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGM---EAKG 283
Query: 358 VSTDPYVFEAFGKGDFHSS--SEAFLEFKRQRKWTYRKLIAVY 398
S + F G + +A FK K + + Y
Sbjct: 284 CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTY 326
>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 636
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/390 (22%), Positives = 155/390 (39%), Gaps = 55/390 (14%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R+ I YR G L+ LG+ K+P AH+L + EG + + AL+ Y
Sbjct: 143 ELLREQIWYRPYSGMY--IKLIVMLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLSAY 200
Query: 90 ANNGFVLEAQVVWEEL-LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+G + +A + EE+ + V S L+ + ++ F++ +++ +
Sbjct: 201 GRSGLLDKAFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPN 260
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVS-RGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I +GK E ME TL +M+S + D T N+ + + G + ME Y
Sbjct: 261 TITYNTLIDAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMNSTLRAFGISGQIETMEKCY 320
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--A 265
+ + + GI T+ N+LL SY A
Sbjct: 321 EKFQGA-------GIEPSIMTF----------------------------NVLLDSYGKA 345
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
G++K S E+M+ + + + T+NI AF R + M+ E + P V
Sbjct: 346 GDYKKMSAVMEYMQ--KYHYSWTIITYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 403
Query: 326 TYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVF----EAFGKGDFHSSSEAFL 381
T +V AY ++ L + D ++ D F +A+G+ + + L
Sbjct: 404 TLCSLVRAYGQAEKPEKIEGVLRFIENSD---ITLDTVFFNCLVDAYGRMGCFAEMKGVL 460
Query: 382 EFKRQR-----KWTYRKLIAVYLKKQLRRN 406
Q+ K TYR +I Y K + ++
Sbjct: 461 ILMEQKGYRPDKITYRTMIKAYSSKGMTKH 490
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 137/317 (43%), Gaps = 24/317 (7%)
Query: 32 ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
AR+ I + + GF V +++ + A ++++ ++ +G+ PD+ T +L+
Sbjct: 192 AREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS 251
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
G + EA ++++++ V + + L+D Y G S D++ + +
Sbjct: 252 GMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG--I 309
Query: 148 LPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+P V Y+ + +G++ ++ +KEM +G D+ T N I YSR G+
Sbjct: 310 MPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFD 369
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM-----LGEFLRDVGLGRKDLGNLLWNLL 260
+ + I+ + S Y+ R+ M L E + D G+ D+ +++N +
Sbjct: 370 LHNEMLSKG--IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS-PDV--IMFNAM 424
Query: 261 LLSYAGNFKMKSLQREFM---RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
+ + N +++R FM M PD TFN R + + L+ MK
Sbjct: 425 IDGHCAN---GNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKX 481
Query: 318 ESVGPDLVTYGCVVDAY 334
+ PD ++Y ++ Y
Sbjct: 482 RGIKPDHISYNTLISGY 498
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+ + + + PD T LM G V EA+++ +E+ + L+
Sbjct: 437 AFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLIS 496
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
YGR G + + D++ + Y+ I C K + +L E LKEMV++G S
Sbjct: 497 GYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISP 556
Query: 183 DSAT 186
D +T
Sbjct: 557 DDST 560
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL +++ + V SL+ L R+ + A L + +G+ PD A++ +
Sbjct: 369 DLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGH 428
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
NG V A ++ +E+ S + LM R G E ++D++ R
Sbjct: 429 CANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDH 488
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
Y+ IS +G++G ++ EM+S GF+ T NA I
Sbjct: 489 ISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALI 530
>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/309 (20%), Positives = 134/309 (43%), Gaps = 42/309 (13%)
Query: 32 ARKIIRYRKQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A K+ R K G + C S + L + + A ++ +++ ++G PD + C L+
Sbjct: 354 AAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLH 413
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
YA+ G+ + ++ + S+ +V + L+ AY + G ++ + I ++ + +
Sbjct: 414 GYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEM--QQQGV 471
Query: 148 LPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
P+V YS IS F + G+L +MV+RG ++A +Y+ S+ +
Sbjct: 472 SPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTA------VYH----SIIQGFC 521
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+G L +++ L+ + + + G+ R D+ + +N ++ S
Sbjct: 522 MHGGLVKAKELVSE----------------------MINKGIPRPDI--VFFNSVINSLC 557
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+ ++ F +++ G PD+ TF + + L+ M+ V D+V
Sbjct: 558 KDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIV 617
Query: 326 TYGCVVDAY 334
TY ++D Y
Sbjct: 618 TYSTLLDGY 626
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 82/200 (41%), Gaps = 8/200 (4%)
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+V Y+ I K ++ E L++M + G D+ T N I Y+ G L E
Sbjct: 298 PDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKM 357
Query: 207 YGRLKRSRHLIDKEGIRAVSF--TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ ++K SR LI I SF + K + E + + + LL Y
Sbjct: 358 FRKMK-SRGLIPNIVI-CNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGY 415
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
A + F M G D FNI A+++ M D L M+ + V PD+
Sbjct: 416 ASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDV 475
Query: 325 VTYGCVVDAYLDKRLGRNLD 344
VTY V+ A+ R+GR D
Sbjct: 476 VTYSTVISAF--SRMGRLTD 493
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 6/218 (2%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
++DA + ++ ++ Q++ A Y+ I + G+L+ ++M SRG
Sbjct: 306 IIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRG 365
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF-ML 238
+ N+F+ + G E + + H D + Y E F M+
Sbjct: 366 LIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMI 425
Query: 239 GEF--LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
G F ++ G+ ++N+L+ +YA + F M + G PD+ T++
Sbjct: 426 GLFNSMKSNGIAAD---CRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVI 482
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
AFSRM D M + P+ Y ++ +
Sbjct: 483 SAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGF 520
>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 819
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 10/269 (3%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K GL PD + L+ Y + +A+ V+ E+ +S + + L+DAYG G
Sbjct: 391 LKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGM 450
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
F E IS++ ++ + P+V S + ++ G+ Q ++ L+ RG ++
Sbjct: 451 FKEAISLLHEM--EKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAY 508
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL 247
N+ I Y FG + Y + S D + K K+ +F D+
Sbjct: 509 NSGIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFEDMVD 568
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS---RMSM 304
R L +++ L+ SY K+ + F+ M +G PD+ T+ A++ +
Sbjct: 569 LRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTS 628
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
WDL + M+ ++ PD + +++A
Sbjct: 629 VWDL---FKEMEGNAILPDAIICSSLMEA 654
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 113/286 (39%), Gaps = 24/286 (8%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L + G+ PD T ++ + N +A +E + ++ L+ ++
Sbjct: 242 ALELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYFEMMKGANIAPDTFTLNIVIH 301
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
++G + + +++ + + P+V Y+ I + GQ+E + MV+ G
Sbjct: 302 CLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGV 361
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA--VSFTYL-------- 230
+ + NA + Y+ G TE A+G K L+ + G+R VS+T L
Sbjct: 362 KPNIVSYNALLGAYASHGMHTE---AFGIFK----LLKQNGLRPDVVSYTTLLNAYGRSA 414
Query: 231 -KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
E+ + E ++ K + +N L+ +Y K M + G PD+
Sbjct: 415 QPEKAREVFNEMRKNSCKPNK----VSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDV 470
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ + A R + LE K + ++V Y + +YL
Sbjct: 471 VSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYL 516
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 6/223 (2%)
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLK 173
+ + L++A+ R G + I+I+D + A + P Y+ ++ G G + K
Sbjct: 190 IYNSLINAHARAGLWRWAINIMDDM--LRAAIPPSRATYNNVVNACGAAGNWKKALELCK 247
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
+M+ G D T N + + T+ + +K + D + V +K
Sbjct: 248 KMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVG 307
Query: 234 KFFMLGEFLRDVGLGRKDLGN--LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
+ + L + R + + ++ SY ++++ + F M G P++ +
Sbjct: 308 QHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVS 367
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+N A++ M + + +K + PD+V+Y +++AY
Sbjct: 368 YNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAY 410
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 134/300 (44%), Gaps = 24/300 (8%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ + + A ++ ++S+GL P T +L+ N G + EA+V+ +E+LSS+
Sbjct: 309 LIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSN 368
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
+V + L++ Y + E + D + L P V ++ + + K G++E
Sbjct: 369 LKPNVITYNALINGYCKKKLLEEARELFDNIG--KQGLTPNVITFNTLLHGYCKFGKMEE 426
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
K M+ +GF +++T N I+ + R G + E++ ++ G++A +
Sbjct: 427 AFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQC-------RGVKADTV 479
Query: 228 TY----------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277
TY + +K L + + D GL +L +N+LL Y +++
Sbjct: 480 TYNILISAWCEKKEPKKAARLIDEMLDKGLKP---SHLTYNILLNGYCMEGNLRAALNLR 536
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
+M + G ++ T+N+ + R D + L M + + P+ TY + + ++K
Sbjct: 537 KQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEK 596
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 76/384 (19%), Positives = 150/384 (39%), Gaps = 56/384 (14%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+++IR + + +++ L + K + A +V+ +K G P+ T L+ Y
Sbjct: 219 KEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKM 278
Query: 93 GFV---LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
G V +A + +E++ + + + L+D + + + + + +++ +
Sbjct: 279 GRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTV 338
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
Y+ ++ +G+L + L EM+S + T NA I Y + L E
Sbjct: 339 VTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEE------- 391
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
+R L D G + ++ + +N LL Y K
Sbjct: 392 ---ARELFDNIGKQGLTPNVIT-------------------------FNTLLHGYCKFGK 423
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
M+ M E GF P+ +T+N V F R ++ L M+ V D VTY
Sbjct: 424 MEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNI 483
Query: 330 VVDAYLDKR--------LGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFL 381
++ A+ +K+ + LD GL +L + + + Y E G+ ++
Sbjct: 484 LISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYN--ILLNGYCME----GNLRAALNLRK 537
Query: 382 EFKRQRKW----TYRKLIAVYLKK 401
+ +++ +W TY LI Y +K
Sbjct: 538 QMEKEGRWANVVTYNVLIQGYCRK 561
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 35/246 (14%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ +KK A +L + + +GL P+ T L+ Y G + EA ++ + +L
Sbjct: 378 ALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEK 437
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F+ + + L+ + R G E+ ++++++ CR Y+ IS + ++ + +
Sbjct: 438 GFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKA 497
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+ EM+ +G T N + Y G+L R ++KEG A T
Sbjct: 498 ARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNL-------RKQMEKEGRWANVVT 550
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y N+L+ Y K++ M E G P+
Sbjct: 551 Y----------------------------NVLIQGYCRKGKLEDANGLLNEMLEKGLIPN 582
Query: 289 LTTFNI 294
TT+ I
Sbjct: 583 RTTYEI 588
>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Vitis vinifera]
gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 82/379 (21%), Positives = 153/379 (40%), Gaps = 49/379 (12%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R+ + YR G L+ LG+ K+P AH L + EG + ++ AL+ Y
Sbjct: 126 ELLREQLWYRPNSGIY--IKLIVMLGKCKQPEKAHALFLAMIDEGCVVNHEAYTALLSAY 183
Query: 90 ANNGFVLEAQVVWEELLSSSFVLS-VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ +G +A + E++ ++ V S L+ + ++ F+++ ++ ++ +
Sbjct: 184 SRSGLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKVPVLLSDMANQGIKPN 243
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRG-FSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I +GK + ME+TL EM+ G D T N+ + + G + ME Y
Sbjct: 244 TVTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLRAFGSSGQIETMEKCY 303
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
+ + + GI T+ N+LL SY
Sbjct: 304 EKFQSA-------GIEPNIKTF----------------------------NILLDSYGKA 328
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
K + + M + F + T+N+ AF R + M+ E + P VT
Sbjct: 329 EKYEKMSAVMEYMQKYHFSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 388
Query: 328 GCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY---VFEAFGKGDFHSSSEAFLEFK 384
+V AY R G+ G +++S V+ + + +A+G+ + + LE
Sbjct: 389 CSLVRAY--GRAGKAEKIGGVLRFIENSDVMLDIVFFNCLVDAYGRLGCFAEMKGVLEMM 446
Query: 385 RQR-----KWTYRKLIAVY 398
+++ K TYR +I Y
Sbjct: 447 KKKGCKPDKITYRTMIKAY 465
>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
Length = 677
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 124/282 (43%), Gaps = 20/282 (7%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + N +K GL PD + +L+ Y + +A+ V+ ++ +S + + L+D
Sbjct: 242 ALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALID 301
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLELMENTLKEMVSRGF 180
AYG G E + ++ ++ + P+V S + ++ G+ Q+ +E L+ SRG
Sbjct: 302 AYGSAGMLKEAVGLLHEM--EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGI 359
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERKF 235
+++ N+ I Y FG + Y ++ S D AV++ L K K+
Sbjct: 360 DLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPD-----AVTYNILISGSSKLGKY 414
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
F D+ + +++ L+ SY K+ + F M ++G PD+ T+
Sbjct: 415 TESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTL 474
Query: 296 AVAFSRMSMF---WDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
A++ + WDL + M+ + PD + +++A+
Sbjct: 475 IQAYNAGGGWKRAWDL---FKEMEVNGIPPDAIICSSLMEAF 513
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 23/307 (7%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T ++M Y G V + +++ +++ ++ + L+ AY G E ++I
Sbjct: 186 PDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAI 245
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ + + L P++ Y+ ++ +G+ Q E +M + + NA I Y
Sbjct: 246 FNLI--KKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAY 303
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIR--AVSFTYL-----KERKFFMLGEFLRDVGL 247
G L E A G L H ++K+GI+ VS + L + R+ + L
Sbjct: 304 GSAGMLKE---AVGLL----HEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARS 356
Query: 248 GRKDLGNLLWNLLLLSYA--GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
DL + +N + SY G+++ K+L+ + M E+ PD T+NI S++ +
Sbjct: 357 RGIDLNTVAYNSGIKSYLSFGDYE-KALEL-YTSMRESNVKPDAVTYNILISGSSKLGKY 414
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS-PVVSTDPYV 364
+ E M V Y ++ +Y+ + + S M P V T +
Sbjct: 415 TESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTL 474
Query: 365 FEAFGKG 371
+A+ G
Sbjct: 475 IQAYNAG 481
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 119/300 (39%), Gaps = 5/300 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS--DLMDAYGRIGCFN 131
G +PD + L+ N G +A + + V S V++ ++D + + G N
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVN 238
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ + ++ R YS + K ++ E L++MV++G D+ T N I
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLI 298
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
YS G E + ++R L D + + + K K + + + ++
Sbjct: 299 YGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQN 358
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ ++L YA + + F M G PD+ TFN+ A++ M +
Sbjct: 359 PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 418
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
M+ V P +VTY V+ A R+G+ +D + K N V D Y + +G
Sbjct: 419 FNEMRDHGVKPHVVTYMTVIAALC--RIGK-MDDAMEKFNQMIDQGVVPDKYAYHCLIQG 475
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 153/368 (41%), Gaps = 60/368 (16%)
Query: 27 KNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM 86
K DL +++++ V +S+V L + + A + + ++G+LPDN T L+
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLI 298
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
Y++ G EA V++E+ S + V L+ LM + + G E + D ++ + +
Sbjct: 299 YGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQN 358
Query: 147 LLPEVYSRAI--SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL---- 200
P+V+S I + + +G L M + M+ G + D T N I Y+ G L
Sbjct: 359 --PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM 416
Query: 201 ---TEME---------------TAYGRLKRSRHLIDK------EGIRAVSFTY------- 229
EM A R+ + ++K +G+ + Y
Sbjct: 417 IIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGF 476
Query: 230 ------LKERKFFMLGEFLRDVGLGRKDL---GNLLWNLLLLSYAGNFKMKSLQREFMRM 280
LK ++ ++ E + + G+ R D+ G+++ NL L ++ Q F
Sbjct: 477 CTHGSLLKAKE--LISEIMNN-GM-RLDIVFFGSIINNLCKLG-----RVMDAQNIFDLT 527
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
G HPD +N+ + + + M + P++V YG +V+ Y ++G
Sbjct: 528 VNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYC--KIG 585
Query: 341 RNLDFGLS 348
R +D GLS
Sbjct: 586 R-IDEGLS 592
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 109/267 (40%), Gaps = 41/267 (15%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
+G+ PD T L+ YAN G + +A +++ E+ V ++ A RIG ++
Sbjct: 390 DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDD 449
Query: 133 IISIIDQVSCRNADLLPEVYSR--AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
+ +Q+ + ++P+ Y+ I F G L + + E+++ G +D
Sbjct: 450 AMEKFNQMI--DQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLD------- 500
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
I++ FGS+ GR+ ++++ D +VGL
Sbjct: 501 IVF---FGSIINNLCKLGRVMDAQNIFD----------------------LTVNVGLHPD 535
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+++N+L+ Y KM+ R F M AG P++ + + ++ D L
Sbjct: 536 ---AVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRI-DEGL 591
Query: 311 SL-EHMKHESVGPDLVTYGCVVDAYLD 336
SL M + + P + Y ++D +
Sbjct: 592 SLFREMLQKGIKPSTILYNIIIDGLFE 618
>gi|224069806|ref|XP_002303044.1| predicted protein [Populus trichocarpa]
gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 135/331 (40%), Gaps = 30/331 (9%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R+ + YR G L+ LG+ K+P AHQL + EG + + AL+ Y
Sbjct: 128 ELLREQLWYRPYAGMY--VKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAY 185
Query: 90 ANNGFVLEAQVVWEELLSS----------SFVLS----------VQVLSDLMDAYG---R 126
+G +A + EE+ ++ S ++ VQVL M++ G
Sbjct: 186 GRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPN 245
Query: 127 IGCFNEI-ISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSVD 183
F E+ ++++ +S D P+V++ I FG GQ+E+MEN ++ S G +
Sbjct: 246 TVTFAEMEATLMEMLS--QQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPN 303
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
T N + Y + G+ +M ++R + V + + + R
Sbjct: 304 IKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFR 363
Query: 244 DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
+ R + L+ +Y K + + + + D FN A+ R+
Sbjct: 364 LMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLE 423
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F ++ LE M+ + PD VTY ++ AY
Sbjct: 424 CFAEMKEVLELMEEKGCKPDKVTYRTMIKAY 454
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Query: 37 RYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVL 96
RY V +++ GR L ++SE + P TLC+L+ Y G
Sbjct: 332 RYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPE 391
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF---NEIISIIDQVSCRNADLLPEVYS 153
+ V + +S L + L+DAYGR+ CF E++ ++++ C+ +
Sbjct: 392 KIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMI 451
Query: 154 RAISCFGKQGQLELMENTL 172
+A S G + + N L
Sbjct: 452 KAYSIKGMTSHAKKLRNLL 470
>gi|356565453|ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 488
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/352 (19%), Positives = 134/352 (38%), Gaps = 84/352 (23%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
D+ R+ Y+ +EG L+ LG+ +PH AHQL T+ EGL P AL+ Y
Sbjct: 114 DMLREQTFYQPKEGTY--MKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALLAAY 171
Query: 90 ANNGFVLEA------------------------------------QVVWEELLSSSFVLS 113
+ + EA ++++EE+ S + +
Sbjct: 172 CRSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSIMPN 231
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQV----SCRNADLLPEVYS--RAISCFGKQGQLEL 167
+ ++ YG+ G F+++ ++ + +C+ P+V++ IS FG GQ+++
Sbjct: 232 TVTQNIVLGGYGKAGMFDQMEKVLSSMLLSTTCK-----PDVWTMNTIISVFGNMGQIDM 286
Query: 168 MENTLK-------EMVSRGFSV----------------------------DSATGNAFII 192
ME + E +R F++ ++T N I
Sbjct: 287 MEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 346
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
++ G ME + +++ D + + + Y F + +R G
Sbjct: 347 AFADAGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKVISSVRLAGKLEIPE 406
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+N +L + A + ++R F RM ++ PD TT+ I A+ + M
Sbjct: 407 NITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTIMIEAYRKEGM 458
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 116/277 (41%), Gaps = 13/277 (4%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
++ EG+ PD T +L+ + ++Q V+ E+ + + L+DA + G
Sbjct: 296 MQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQ 355
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
SI+ + +N YS I +GK G E +M G D + N
Sbjct: 356 MELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNT 415
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLGEFLRDVG 246
I Y++ G + TA ++R D A+ Y K+ K+ L + ++ G
Sbjct: 416 LIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEG 475
Query: 247 LGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
L + N+L ++ L+ +Y+ + F+ AG PD+ ++ + + +
Sbjct: 476 L----VPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLV 531
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
D + L+ M + P++VTY ++DAY GRN
Sbjct: 532 EDAVVLLQEMTQAGIQPNIVTYNSLIDAY-----GRN 563
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ G++ K A L + +K+EGL+P+ T AL+ Y+ G +A ++ E +
Sbjct: 450 ALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRA 509
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V + S L+D+ + G + + ++ +++ A + P + Y+ I +G+ GQ++
Sbjct: 510 GLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMT--QAGIQPNIVTYNSLIDAYGRNGQVD 567
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+V++A GN I +++ G + E L ++ D G+ A
Sbjct: 568 --------------NVEAAKGNMPINVFNKVGDRS-TEIICKTLTSQQNANDHTGVLAAV 612
Query: 227 FTYLKERKF 235
+ + ++F
Sbjct: 613 SVFHEMQQF 621
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 48/255 (18%)
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
IS G+ G++E+ + GF GN Y + M +AYGR R R
Sbjct: 206 ISTLGRLGKVEIALDVFNRAQKAGF------GNNVYAY-------SAMVSAYGRSGRCRE 252
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA-GNFKMKSLQ 274
+ K F + ++ G + +L + +N ++ + G +K
Sbjct: 253 AL----------------KVF---QAMKKAGC-KPNL--ITYNTIIDACGKGGVDLKKAL 290
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F M + G PD TFN SR S++ D M+ + D+ TY ++DA
Sbjct: 291 DIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAV 350
Query: 335 LDKRLGRNLDFG---LSKMNLDD-SPVVSTDPYVFEAFGK-GDFHSSSEAFLEFK----R 385
G ++ +S M L + SP V T + + +GK G F + + + K R
Sbjct: 351 CK---GGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVR 407
Query: 386 QRKWTYRKLIAVYLK 400
+ +Y LI +Y K
Sbjct: 408 PDRVSYNTLIDIYAK 422
>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Glycine max]
Length = 481
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 146/350 (41%), Gaps = 50/350 (14%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A L+ LG+ ++P A L + SEGL P AL+ Y +G + +A E++ S
Sbjct: 128 AKLLMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALVSAYGQSGLLDQAFSTVEDMKS 187
Query: 108 -SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
V S L+ + F+ I ++ ++S Y+ I +GK E
Sbjct: 188 VVDCEPDVYTYSILIRCCAKFRRFDLIEHVLAEMSYLGIKCNCVTYNSIIDGYGKASMFE 247
Query: 167 LMENTLKEMVSRGFS-VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
M++ L +M+ G S D T N+F+ Y G + +ME Y
Sbjct: 248 QMDDALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKMEKWYD----------------- 290
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--AGNF-KMKSLQREFMRMSE 282
+F ++G + D+ +N ++ SY AG + KMK++ +FM +
Sbjct: 291 --------EFQLMGI--------KPDITT--FNTMIKSYGKAGMYEKMKTVM-DFME--K 329
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
F P + T+N F + + MKH V P+ +TY +V AY
Sbjct: 330 RFFTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVKPNSITYCSLVSAYSKVGCIDK 389
Query: 343 LDFGLSKMNLDDSPVVSTDPY---VFEAFGK-GDFHSSSEAFLEFKRQRK 388
+D + ++++S VV P+ + A+G+ G+ E FL R+RK
Sbjct: 390 VDSIMR--HVENSDVVLDTPFFNCIISAYGQAGNLKKMGELFLAM-RERK 436
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/273 (17%), Positives = 118/273 (43%), Gaps = 9/273 (3%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKK-PH 61
T+S+ + KF+RF++ H + ++ + V S+++ G+
Sbjct: 197 TYSILIRCCAKFRRFDLIEH--------VLAEMSYLGIKCNCVTYNSIIDGYGKASMFEQ 248
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
+ L + +++ PD TL + + Y N G + + + ++E + + ++
Sbjct: 249 MDDALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKMEKWYDEFQLMGIKPDITTFNTMI 308
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
+YG+ G + ++ +++D + R Y+ I FGK G++E M+ +M G
Sbjct: 309 KSYGKAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVK 368
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
+S T + + YS+ G + ++++ ++ S ++D + Y + +GE
Sbjct: 369 PNSITYCSLVSAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISAYGQAGNLKKMGEL 428
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
+ + + N+ + ++ SY +++Q
Sbjct: 429 FLAMRERKCEPDNITFACMIQSYNTQGMTEAVQ 461
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 112/272 (41%), Gaps = 4/272 (1%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+L+ ++ +GL P+ T ++L G V EA+ V E++S + + L+D +
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 268
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
++G + + D++ R Y+ I + G++ + EMV + D
Sbjct: 269 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 328
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
T A I Y + G + E + + ++ + + A++ K + E L +
Sbjct: 329 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHE 388
Query: 245 VGLGRKDLGNLLWNLLL--LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ +L +N L+ L AGN + + M AGFHPD T+ A+ +
Sbjct: 389 MCRKGLELNIYTYNSLVNGLCKAGN--IDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKS 446
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
H L M + P +VT+ +++ +
Sbjct: 447 REMVRAHELLRQMLDRELQPTVVTFNVLMNGF 478
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/313 (18%), Positives = 123/313 (39%), Gaps = 8/313 (2%)
Query: 32 ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A +++R EG V +L++ + A++L + ++ + PD T A++
Sbjct: 242 AERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVIC 301
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
G V+EA ++ E++ + L+D Y + G E S+ +Q+ L
Sbjct: 302 GLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQM--LQMGL 359
Query: 148 LPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
P + Y+ K G+++ L EM +G ++ T N+ + + G++ +
Sbjct: 360 TPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVK 419
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
++ + D + Y K R+ E LR + + +N+L+ +
Sbjct: 420 LMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFC 479
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+ ++ ++ M E G P+ TT+N + + M + V PD
Sbjct: 480 MSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGN 539
Query: 326 TYGCVVDAYLDKR 338
TY ++ + R
Sbjct: 540 TYNILIKGHCKAR 552
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 111/279 (39%), Gaps = 23/279 (8%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
F+ +++ L + + A +L + + + L PD T AL+ Y G + EA +
Sbjct: 293 FITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHN 352
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
++L ++ + L D + G + ++ ++ + +L Y+ ++ K G
Sbjct: 353 QMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAG 412
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
++ +K+M GF D+ T + Y + EM A+ L R ++D+E ++
Sbjct: 413 NIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKS---REMVRAHELL---RQMLDRE-LQ 465
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL----------WNLLLLSYAGNFKMKSL 273
T+ F + L D G K L +L +N L+ Y M++
Sbjct: 466 PTVVTFNVLMNGFCMSGMLED---GEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRAT 522
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSR---MSMFWDLH 309
+ M G PD T+NI + M W LH
Sbjct: 523 TEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLH 561
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/201 (16%), Positives = 79/201 (39%)
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
++ +I+++ + P Y+ I K G++ E L+EM+S G + D I
Sbjct: 207 VLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 266
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
+ + G+++ + +++ + D AV + + + ++ R +
Sbjct: 267 GFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEP 326
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+ + L+ Y KMK +M + G P++ T+ A + + L
Sbjct: 327 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELL 386
Query: 313 EHMKHESVGPDLVTYGCVVDA 333
M + + ++ TY +V+
Sbjct: 387 HEMCRKGLELNIYTYNSLVNG 407
>gi|255551975|ref|XP_002517032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543667|gb|EEF45195.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 875
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 15/252 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SLV+ L P A + ++ GL+ D CA++ + G + A+ V++E++
Sbjct: 577 SSLVQILASADLPDKAKHYLKKMQEAGLVSDCVQYCAVISSFVKLGKLEMAEEVYKEMVG 636
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ V L++A+ GC E IS ID + +Y+ I + K G L
Sbjct: 637 FDVKPDIIVYGVLINAFADSGCVKEAISYIDAMKGAGLPGNTVIYNSLIKLYTKVGYLRE 696
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ T K + S ++ + N I YS + E + +KR A F
Sbjct: 697 AQETYKLLQSSDVGPETYSSNCMIDLYSEQSMVKPAEEIFESMKRKGD--------ANEF 748
Query: 228 TYLKERKFFM-LGEFLRDVGLGR--KDLGNLL----WNLLLLSYAGNFKMKSLQREFMRM 280
TY + LG F + + + + ++LG L +N +L YA + + K F M
Sbjct: 749 TYAMMLCMYKRLGWFEQAIQIAKQMRELGLLTYLLSYNNVLGLYALDGRFKEAVGTFKEM 808
Query: 281 SEAGFHPDLTTF 292
AG PD TF
Sbjct: 809 VGAGIQPDDCTF 820
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 60/308 (19%), Positives = 112/308 (36%), Gaps = 31/308 (10%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ LG+ K+ L N + + + P NST L+ Y+ G + E + W E ++
Sbjct: 210 MIRILGKAKQWRYLECLCNEMSFKRISPINSTYGTLIDVYSKGG-LREKALDWLEKMNKQ 268
Query: 110 FVLSVQV-LSDLMDAYGRIGCFNEIISIIDQVSCRNA---------------------DL 147
+ +V + ++ Y + G F + + S R A L
Sbjct: 269 GMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSLREALRHKVTGKASVRVENERQMDVSL 328
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I +GK GQ++ + EM+ + + T N I G L E+
Sbjct: 329 SSHTYNTMIDTYGKAGQIKEASDIFAEMLRKRILPTTVTFNTMIHICGNQGQLEEVALLM 388
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
+++ R D + F + K M + + + + + + LL +++
Sbjct: 389 QKMEELRCPPDTRTYNILIFIHAKHNDINMAASYFKRMKKDQLQPDLVSYRTLLYAFSIR 448
Query: 268 FKMKSLQREFMRMSEAGFHPD------LTTFNIRAVAFSRMSM-FWDLHLSLEHMKHESV 320
+ + M E G D LT I A + + FW HL+ +M E
Sbjct: 449 HMVNDAENLVSEMDEKGIEIDEYTQSALTRMYIEAGMLEKSWLWFWRFHLA-GNMSSECY 507
Query: 321 GPDLVTYG 328
++ YG
Sbjct: 508 SANIDAYG 515
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 107/279 (38%), Gaps = 35/279 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ LG + A + +K GL+P AL+ Y G + +A+ + E+ S
Sbjct: 367 AVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERS 426
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F S L+DAY G + ++ ++ V+SR ++ + +G+ +
Sbjct: 427 GFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKS 486
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
L+EM + G S D N I FG ++ A R R EG++ + T
Sbjct: 487 FQVLREMRNSGVSPDRHFYNVMI---DTFGKCNCLDHALATFDRMRM----EGVQPDAVT 539
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
WN L+ + + + F M E+G P
Sbjct: 540 ----------------------------WNTLIDCHCKSGHHNKAEELFEAMQESGCSPC 571
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
TT+NI +F + D+ L M+ + + ++VTY
Sbjct: 572 TTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTY 610
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 116/277 (41%), Gaps = 15/277 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +V+ ++ G PD T L+ YAN G A++V +E+ +S + V S ++
Sbjct: 416 AESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILA 475
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+Y G + + ++ ++ RN+ + P+ Y+ I FGK L+ T M G
Sbjct: 476 SYRDRGKWQKSFQVLREM--RNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGV 533
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
D+ T N I + + G + E + ++ S G + TY F E
Sbjct: 534 QPDAVTWNTLIDCHCKSGHHNKAEELFEAMQES-------GCSPCTTTYNIMINSFGEQE 586
Query: 241 FLRDVG--LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
DV LG+ LL N++ + G +++ F M G P + N A
Sbjct: 587 RWEDVKTLLGKMQSQGLLANVVTYTTLG-LSEQAIN-AFRVMRADGLKPSVLVLNSLINA 644
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
F + L++MK + PD+VTY ++ A +
Sbjct: 645 FGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALI 681
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 96/236 (40%)
Query: 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158
Q ++ E+ S L Q+L+D++ + + G N +S + V I+
Sbjct: 312 QKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITA 371
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
G G+ E E +E+ G + NA + Y + GSL + E+ ++RS D
Sbjct: 372 LGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPD 431
Query: 219 KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
+ + Y ++ L+++ + +++ +L SY K + +
Sbjct: 432 EHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLR 491
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M +G PD +N+ F + + + + M+ E V PD VT+ ++D +
Sbjct: 492 EMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCH 547
>gi|356546358|ref|XP_003541593.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g24830-like [Glycine max]
Length = 577
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 30/300 (10%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL---SSSFVLSVQVLSD 119
A L +T+ G+LP+ T L+ G ++EA+ + EE+L + + + +
Sbjct: 208 ALYLFSTMTYAGILPNRVTCRILVHALCEKGLLMEAKRMLEEVLKDDDEKDIPDLVISTV 267
Query: 120 LMDAYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177
MD+Y + G + +++ +Q+ +C D++ Y+ I+ F K Q+ L EM
Sbjct: 268 FMDSYFKDGAIIQALNLWNQMLQNCTKVDVV--AYNVLINGFCKSQQMNLAYGYACEMFK 325
Query: 178 RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-LKERKFF 236
+G D+ T N I + G ++E G ++ GI TY + R
Sbjct: 326 KGLLPDAFTYNIIIGALCKEGKISEACYTVG-------VMSNMGIMPDQITYQIVIRGLC 378
Query: 237 MLGEFLRDVGLGRKDLGNLL------WNLLLLSYAGNFKMKSLQREFM---RMSEAGFHP 287
GE +R L L NL+ WNL++ Y + L F +M G P
Sbjct: 379 FAGEIVRAKHLLWCMLNNLMVPKPLIWNLIIDLYG---RYNDLSNAFFTRDQMLSFGVCP 435
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGL 347
++ T+N +A + F E M + + PD+VTY ++ A + +GR LDF L
Sbjct: 436 NVFTYNALILAQVKSGNFHGACSLKEEMISKCLFPDVVTYNLLIGAACN--IGR-LDFAL 492
>gi|449449098|ref|XP_004142302.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01740-like [Cucumis sativus]
gi|449521427|ref|XP_004167731.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g01740-like [Cucumis sativus]
Length = 585
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/297 (19%), Positives = 124/297 (41%), Gaps = 15/297 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL++ + +A + +K + P+ T L+ + +G + A ++E++LS
Sbjct: 200 SSLIDGYCKAGSLDVAFEYFERMKECSVRPNEFTYSTLIDGCSKHGMLARADSLFEKMLS 259
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+S + + V + ++D + + G ++ I I+Q+ R+ L Y+ IS F + G+ +
Sbjct: 260 ASILPNCTVYTSIIDGHFKKGNVDDAIKYINQMFDRDIKLDLTAYTVIISGFHRVGRFDK 319
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV-- 225
+ + G D A + + + G++ E AY L D + A+
Sbjct: 320 SMEAAEYVAKNGLLPDRIILTAIMDVHFKAGNIKEALNAYKILLAKGFEADVVTLSALMD 379
Query: 226 ---SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
YL+E + +++ E + +L+ + + + + ++ MSE
Sbjct: 380 GLSKHGYLQEARRYLVKE----------NANEILYTVFIDALCKEGNLDDAEKMIKEMSE 429
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
AGF PD + + + + M E V PDL+TY ++ +K L
Sbjct: 430 AGFVPDKFVYTSWIAELCKQGNLLKAFMVKKRMVQEHVEPDLLTYSSLIGGLAEKGL 486
>gi|255685506|gb|ACU28242.1| At4g14190-like protein [Arabidopsis thaliana]
Length = 177
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%)
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
L+ ME + ++SR +++ +T + + Y FG + +ME ++ R +D+ +R
Sbjct: 2 LKRMEQMYQSLMSRKMTLEPSTLLSMLEAYVEFGLIEKMEETCNKIIRFGISLDEGLVRK 61
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
++ Y++ F L + R + R L W L LL +A K L M EA
Sbjct: 62 LANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEAR 121
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ T NI +A+S+M F + L L ++ + V DLVT G V D
Sbjct: 122 VPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFD 169
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 115/289 (39%), Gaps = 6/289 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L + K A + + +EGL PD+ T L+ Y G V A+ + + + +
Sbjct: 291 NLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFN 350
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
FV L+D G N +++ ++ + +Y+ I QG +
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEA 410
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
EM +G + T N + + G +++ + + + D +
Sbjct: 411 AQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470
Query: 229 Y---LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y LK + + + D G+ D +N LL K + + + M E G
Sbjct: 471 YSTQLKMENALEILDVMLDNGV---DPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGC 527
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
P+L TFNI + R + LE MK++SV PD VT+G ++D +
Sbjct: 528 APNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGF 576
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 124/322 (38%), Gaps = 51/322 (15%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
+ +PH A +L+N + S+G + C ++ + F E ++ ++L+S L +
Sbjct: 158 KTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLS 217
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS------------------RAIS 157
+ L+ + G E ++D+V R +LP +++ R +
Sbjct: 218 TFNKLLRVLCKKGDVKECEKLLDKVIKRG--VLPNLFTYNLFIQGLCQRGELDGAVRMVG 275
Query: 158 CFGKQG-------------------QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
C +QG + + E L +MV+ G DS T N I Y + G
Sbjct: 276 CLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGG 335
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN---- 254
+ E G + + D+ R++ E GE R + L + LG
Sbjct: 336 MVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHE------GETNRALALFNEALGKGIKP 389
Query: 255 --LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+L+N L+ + + + MSE G P++ TFNI +M D +
Sbjct: 390 NVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLV 449
Query: 313 EHMKHESVGPDLVTYGCVVDAY 334
+ M + PD+ T+ ++ Y
Sbjct: 450 KVMISKGYFPDIFTFNILIHGY 471
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 127/319 (39%), Gaps = 25/319 (7%)
Query: 31 LARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM 86
LA +I+ GFV SL++ L + + + A L N +G+ P+ L+
Sbjct: 339 LAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
+N G +LEA + E+ + VQ + L++ ++GC ++ ++ + +
Sbjct: 399 KGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG-- 456
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLK---EMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
P++++ I G QL+ MEN L+ M+ G D T N+ + + ++
Sbjct: 457 YFPDIFTFNILIHGYSTQLK-MENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDV 515
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLL 256
Y + +++K G FT+ + RK L ++ + +
Sbjct: 516 METY------KTMVEK-GCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVT 568
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEA-GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315
+ L+ + N + F +M EA T+NI AF+ + M
Sbjct: 569 FGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEM 628
Query: 316 KHESVGPDLVTYGCVVDAY 334
+GPD TY +VD +
Sbjct: 629 VDRCLGPDGYTYRLMVDGF 647
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 113/273 (41%), Gaps = 6/273 (2%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+L+ ++ +GL P+ T ++L G V EA+ V E++S + + L+D +
Sbjct: 309 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 368
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
++G + + D++ R Y+ I + G++ + EMV + D
Sbjct: 369 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 428
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
T A I Y + G + E + + ++ + + A++ K + E L +
Sbjct: 429 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHE 488
Query: 245 VGLGRKDLGNLLWNLLL--LSYAGNFKMKSLQREFMR-MSEAGFHPDLTTFNIRAVAFSR 301
+ +L +N L+ L AGN + M+ M AGFHPD T+ A+ +
Sbjct: 489 MCRKGLELNIYTYNSLVNGLCKAGNIDQAV---KLMKDMEVAGFHPDAVTYTTLMDAYCK 545
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
H L M + P +VT+ +++ +
Sbjct: 546 SREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 578
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/241 (17%), Positives = 97/241 (40%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G V+EA + ++ + V S +++ Y ++G ++ +I+++ + P Y
Sbjct: 267 GRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTY 326
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ I K G++ E L+EM+S G + D I + + G+++ + +++
Sbjct: 327 NGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQK 386
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
+ D AV + + + ++ R + + + L+ Y KMK
Sbjct: 387 RKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKE 446
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+M + G P++ T+ A + + L M + + ++ TY +V+
Sbjct: 447 AFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVN 506
Query: 333 A 333
Sbjct: 507 G 507
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/313 (18%), Positives = 123/313 (39%), Gaps = 8/313 (2%)
Query: 32 ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A +++R EG V +L++ + A++L + ++ + PD T A++
Sbjct: 342 AERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVIC 401
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
G V+EA ++ E++ + L+D Y + G E S+ +Q+ L
Sbjct: 402 GLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQM--LQMGL 459
Query: 148 LPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
P + Y+ K G+++ L EM +G ++ T N+ + + G++ +
Sbjct: 460 TPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVK 519
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
++ + D + Y K R+ E LR + + +N+L+ +
Sbjct: 520 LMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFC 579
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+ ++ ++ M E G P+ TT+N + + M + V PD
Sbjct: 580 MSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGN 639
Query: 326 TYGCVVDAYLDKR 338
TY ++ + R
Sbjct: 640 TYNILIKGHCKAR 652
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 111/279 (39%), Gaps = 23/279 (8%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
F+ +++ L + + A +L + + + L PD T AL+ Y G + EA +
Sbjct: 393 FITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHN 452
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
++L ++ + L D + G + ++ ++ + +L Y+ ++ K G
Sbjct: 453 QMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAG 512
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
++ +K+M GF D+ T + Y + EM A+ L R ++D+E ++
Sbjct: 513 NIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKS---REMVRAHELL---RQMLDRE-LQ 565
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL----------WNLLLLSYAGNFKMKSL 273
T+ F + L D G K L +L +N L+ Y M++
Sbjct: 566 PTVVTFNVLMNGFCMSGMLED---GEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRAT 622
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSR---MSMFWDLH 309
+ M G PD T+NI + M W LH
Sbjct: 623 TEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLH 661
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 124/308 (40%), Gaps = 5/308 (1%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS--DLMDA 123
L++ G +PD + L+ N G +A + + V S V++ ++D
Sbjct: 135 LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDG 194
Query: 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
+ + G N+ + ++ R Y+ + K ++ E L++MV++ +
Sbjct: 195 FFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 254
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
+ T N I YS G E + ++R L D + + + K K +
Sbjct: 255 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFD 314
Query: 244 DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
+ + ++ +N++L YA + + F M G PD TFN++ A++
Sbjct: 315 TMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCG 374
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY 363
M + M+ V PD+VTY V+ A R+G+ +D + K N V+ D Y
Sbjct: 375 MLDKAMIIFNEMRDHGVKPDVVTYRTVIAALC--RIGK-MDDAMEKFNQMIDQGVAPDKY 431
Query: 364 VFEAFGKG 371
+ +G
Sbjct: 432 AYNCLIQG 439
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 130/319 (40%), Gaps = 51/319 (15%)
Query: 29 GDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC 88
G +A +I Y S++ L K + +LV ++ +GL+PD T L+
Sbjct: 271 GGVAANLISYN---------SVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNG 321
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ G + + V+ E++ +V + L++ + G + + I DQ+ R
Sbjct: 322 FCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPN 381
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
Y+ I F ++G + L EM+ GFS T NA + Y G + E A G
Sbjct: 382 ERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQE---AVG 438
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
L R ++++ G+ +Y ++ F R+ LG+ F
Sbjct: 439 IL---RGMVER-GLPPDVVSYST-----VIAGFCRERELGKA-----------------F 472
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFN--IRAVAF-SRMSMFWDLHLSLEHMKHESVGPDLV 325
+MK M E G PD T++ I+ + ++ +DL M + PD V
Sbjct: 473 QMKE------EMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDL---FREMMRRGLPPDEV 523
Query: 326 TYGCVVDAY-LDKRLGRNL 343
TY +++AY +D L + L
Sbjct: 524 TYTSLINAYCVDGELSKAL 542
>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Brachypodium distachyon]
Length = 613
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/346 (19%), Positives = 133/346 (38%), Gaps = 14/346 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ GRK++ + A + V +P T L+ Y N + A+ V E+
Sbjct: 193 LIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEGVISEMQEHG 252
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
S V + +D + C + + + ++ E Y+ I+ +GK Q
Sbjct: 253 IPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAM 312
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM S G + T A + ++R G + E + +++++ H D A+ Y
Sbjct: 313 KIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAY 372
Query: 230 LKERKFFMLG-----EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
R F G ++ +G + +N+L+ +Y + + F + + G
Sbjct: 373 --SRAGFPQGASEIFSLMQHMGC---EPDRASYNILVDAYGRAGLHREAEATFESLKQQG 427
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR--N 342
P + + + A +R + + + PD ++ AY R GR +
Sbjct: 428 MAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAY--ARAGRLDD 485
Query: 343 LDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRK 388
++ L+ M+L S V + A+ + + EA E R+RK
Sbjct: 486 MERLLAAMDLAGSADVGSHNVAVNAYARAGYLGRMEAAFEGIRRRK 531
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 112/294 (38%), Gaps = 47/294 (15%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ G+ K+P A ++ N ++S G + T AL+ +A G +A+ V+E++ +
Sbjct: 298 MINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAG 357
Query: 110 FVLSVQVLSDLMDAYGRIG---CFNEIISIIDQVSCR----NADLLPEVYSRA------- 155
V + LM+AY R G +EI S++ + C + ++L + Y RA
Sbjct: 358 HEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAE 417
Query: 156 ---------------------ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+S + G + E + ++ G D+ NA + Y
Sbjct: 418 ATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAY 477
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT--------YLKERKFFMLGEFLRDVG 246
+R G L +ME RL + L + + + YL + G R
Sbjct: 478 ARAGRLDDME----RLLAAMDLAGSADVGSHNVAVNAYARAGYLGRMEAAFEGIRRRKGK 533
Query: 247 LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
G D + W + YA + F M +AG +PD T + A S
Sbjct: 534 KGGIDADVVSWTSRMGGYARKKEYGKCLEIFEEMVDAGCYPDAGTAKVLMAACS 587
>gi|297833394|ref|XP_002884579.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
gi|297330419|gb|EFH60838.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
Length = 486
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/348 (19%), Positives = 143/348 (41%), Gaps = 51/348 (14%)
Query: 13 KFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCAS-LVEDLGRKKKPHLAHQLVNTVK 71
+F P + ++ +K+ R K G+ + + + DL KK+ A ++ + ++
Sbjct: 56 EFPGITEPVNPRRTPIKNVKKKLDRRSKANGWANTVTETLSDLIAKKQWLQALEVFDMLR 115
Query: 72 SEGLL-PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
+ P T L++ +G AQ +++E+L +V++ + L+ AY R
Sbjct: 116 EQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLI 175
Query: 131 NEIISIIDQV----SCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
++ SI+D + C+ P+V YS + Q +L+++ KEM R + ++
Sbjct: 176 DDAFSILDTMKGLPQCQ-----PDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNT 230
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
T N + Y R G +ME +L + L
Sbjct: 231 VTQNIVLSGYGRVGRFDQMEK-------------------------------VLSDMLVS 259
Query: 245 VGLGRKDLGNLLWNL-LLLSYAGNF-KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ D +W + ++LS GN K+ ++ + + G P+ TFNI ++ +
Sbjct: 260 TAC-KPD----VWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKK 314
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
M+ + +E+M+ TY +++A+ D +N++ +M
Sbjct: 315 RMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQM 362
>gi|356540087|ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Glycine max]
Length = 667
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 139/331 (41%), Gaps = 47/331 (14%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ ++ R K+ HLAH L + ++ +GL PD T L+ C+ +G + ++ + W + +
Sbjct: 150 LLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHG-LFDSSLFWLQQMEQD 208
Query: 110 FVLSVQVL-SDLMDAYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRAISCFGKQGQLE 166
V VL S+L+D ++ +++ ISI ++ S DL+ Y+ I+ FGK
Sbjct: 209 NVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLI--AYNSMINVFGKAKLFR 266
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L+EM D+ + YS ++
Sbjct: 267 EARLLLQEMRDNAVQPDTVS-------YSTLLAI-------------------------- 293
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
Y+ +KF ++ + L N+++ Y K R F M + G
Sbjct: 294 --YVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQ 351
Query: 287 PDLTTFNIRAVAFSRMSMFWD-LHLSLEHMKHESVGPDLVTYGCVVDAY---LDKRLGRN 342
P++ ++N + +F + +HL M+ + V ++VTY +++ Y L+ N
Sbjct: 352 PNVISYNTLLRVYGEADLFGEAIHL-FRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATN 410
Query: 343 LDFGLSKMNLDDSPVV-STDPYVFEAFGKGD 372
L ++K ++ + + ST ++E GK D
Sbjct: 411 LIQEMNKRGIEPNAITYSTIISIWEKAGKLD 441
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 128/308 (41%), Gaps = 17/308 (5%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ P A +L +++ G+ P+ + L+ Y EA ++ +
Sbjct: 322 CNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQ 381
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
S +V + +++ YG+ + ++I +++ R + YS IS + K G+L+
Sbjct: 382 SKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLD 441
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 442 RAAILFQKLRSSGVRIDEVLYQTMIVAYERTGLVAHAKRLLHELKRPDNIPRDTAIAILA 501
Query: 227 FTYLKERKFFMLGEFL--RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
E ++ + R+V KD+ ++ ++ ++ N K ++ F +M E G
Sbjct: 502 RAGRIEEATWVFRQAFDAREV----KDIS--VFGCMINLFSKNKKYANVVEVFEKMREVG 555
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES--VGPD------LVTYGCVVDAYLD 336
+ PD + AF ++ F D +L HE V PD L YG D +
Sbjct: 556 YFPDSDVIALVLNAFGKLREF-DKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMV 614
Query: 337 KRLGRNLD 344
+ L LD
Sbjct: 615 ESLFEKLD 622
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ + PDL +N F + +F + L L+ M+ +V PD V+Y ++ Y+D
Sbjct: 237 FSRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVD 296
Query: 337 KRLGRNLDFGLSKMNLDDSPV-VSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKL 394
+ S+MN P+ ++T + + +G+ H EA F W+ RK+
Sbjct: 297 NQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQ--LHMPKEADRLF-----WSMRKM 348
>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Vitis vinifera]
Length = 587
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 134/349 (38%), Gaps = 33/349 (9%)
Query: 5 SLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAH 64
SL + KF+ FN Q+ K G L + +Y GFVD V +A
Sbjct: 54 SLFIDKRGKFRSFNF-KKQSRKKGGSLRGRGWKY--GSGFVDGIFPVMS-------PIAQ 103
Query: 65 QLVNTVKSE-----------GLLPDNSTLCALMLCYANNGFVLEAQVVWEELL------- 106
Q+++ V+ E L P+++T ++ N L W+ ++
Sbjct: 104 QILDFVQKEERSNRIWGSLDSLSPNHTTWDDII----NVAVQLRLNKQWDAIVLICGWIL 159
Query: 107 -SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
SSF V + L+DAYG+ + + S ++ + Y+ + + G L
Sbjct: 160 YRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLL 219
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E E EM GF + NA+I + G + + R+KR R +
Sbjct: 220 EKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTML 279
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y K K +M + ++ + + L+ ++A + + F ++ EAG
Sbjct: 280 INLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGL 339
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD+ +N A+SR + M+H PD +Y +VDAY
Sbjct: 340 EPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 388
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 123/302 (40%), Gaps = 10/302 (3%)
Query: 27 KNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM 86
K ++ ++ R R Q L+ G+ K ++A ++ + ++S+ P+ T AL+
Sbjct: 256 KAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALV 315
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG---CFNEIISIIDQVSCR 143
+A G +A+ ++E+L + V + LM+AY R G EI S++ + C
Sbjct: 316 NAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCE 375
Query: 144 NADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
P+ Y+ + +G+ G E + + M G + + + YSR G +
Sbjct: 376 -----PDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVA 430
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
+ E ++ +S D + ++ Y + +F + E L + G +N+L+
Sbjct: 431 KCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILI 490
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
Y ++ F + PD+ T+ R A+SR + E M
Sbjct: 491 NIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCY 550
Query: 322 PD 323
PD
Sbjct: 551 PD 552
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 131/314 (41%), Gaps = 50/314 (15%)
Query: 27 KNGDLARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
KN + A K I+ ++G + +L++ GR Q++ ++ +GL P+ +
Sbjct: 441 KNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISY 500
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
L+ C + +LEA+V+ +++ V + Q+ + L+D G + D++
Sbjct: 501 GCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVA 560
Query: 143 RNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R +++P + Y+ I+ K+G++ EN E+ +G S D T N+ I YS G++
Sbjct: 561 R--EIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNV 618
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
+ Y +K+S GI+ TY +
Sbjct: 619 QKALELYETMKKS-------GIKPTLNTYHR----------------------------- 642
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA---VAFSRMSMFWDLHLSLEHMKH 317
L++ G + +++ + M + PD +N V + LH ++E
Sbjct: 643 LIAGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAME---A 699
Query: 318 ESVGPDLVTYGCVV 331
+ + PD +TY C++
Sbjct: 700 QGIQPDKMTYNCLI 713
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 110/266 (41%), Gaps = 39/266 (14%)
Query: 70 VKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
+K E + P T +L+ LC A + EAQ V EE+ FV + L D + +
Sbjct: 278 MKVENVEPTIITFNSLLNGLCRAQ--MMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKC 335
Query: 128 GCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
G + I++ ++ + +L S ++ K+G +E E LK+ + G +
Sbjct: 336 GNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFF 395
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL 247
N + Y + G + + AY +++ ++ G+R TY
Sbjct: 396 NTIVNGYCQVGDINK---AYTTIEK----MEAVGLRPNHVTY------------------ 430
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
N L+ + M+ ++ +M E G P++ T+N + R +F
Sbjct: 431 ----------NSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDR 480
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDA 333
LE M+ + + P++++YGC+++
Sbjct: 481 CFQILEEMEKKGLKPNVISYGCLINC 506
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 102/245 (41%), Gaps = 14/245 (5%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A+ +++E+L + + L+D Y ++G E +I +++ N + ++ +
Sbjct: 235 DAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLL 294
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG----SLTEMETAYGRLKR 212
+ + +E + L+EM GF D T + + G S+T E A +++
Sbjct: 295 NGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEA---VRK 351
Query: 213 SRHLIDKEG---IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
++D + A+ E+ +L +FL + G +G + +N ++ Y
Sbjct: 352 GVQILDYTCSILLNALCKEGNMEKAEEVLKKFLEN---GLAPVG-VFFNTIVNGYCQVGD 407
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ +M G P+ T+N F M + ++ M + V P++ TY
Sbjct: 408 INKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNT 467
Query: 330 VVDAY 334
++D Y
Sbjct: 468 LIDGY 472
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR K+ H L +K +G PD T L+ Y G V A ++EEL +S+
Sbjct: 440 LGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPD 499
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
V + L++ G+ G +E ++ + L P+V YS I CFGK ++E+ +
Sbjct: 500 VISYNSLINCLGKNGDVDEAHMRFKEM--QEKGLNPDVVTYSTLIECFGKTDKVEMACSL 557
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM++ G S + T N + R G E Y +LK ++G+ S TY
Sbjct: 558 FDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLK-------QQGLTPDSITY 608
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/329 (16%), Positives = 135/329 (41%), Gaps = 14/329 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + +K A+++ +K PD T ++ G E+ +++ +L
Sbjct: 229 LLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKG 288
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
F L++ + +++A + ++ + + ++ YS ++ +GQL ++
Sbjct: 289 FTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLD 348
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
N ++ +S+ + ++ F+ S+ G +E + + DK+ ++ +
Sbjct: 349 NIVE--MSKKY-MNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESL 405
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K + L +++N + + ++ + + +M + G PD+
Sbjct: 406 CSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDI 465
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T+NI ++ R E +++ + PD+++Y +++ LG+N D +
Sbjct: 466 FTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINC-----LGKNGDVDEAH 520
Query: 350 MNLDD------SPVVSTDPYVFEAFGKGD 372
M + +P V T + E FGK D
Sbjct: 521 MRFKEMQEKGLNPDVVTYSTLIECFGKTD 549
>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g48730, chloroplastic; Flags: Precursor
gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 136/343 (39%), Gaps = 41/343 (11%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R+ + Y+ G L+ LG+ K+P AH+L + +EG + ++ AL+ Y
Sbjct: 138 ELLREQLWYKPNVGIY--VKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAY 195
Query: 90 ANNGFVLEAQVVWEELLSS---------------------SFVLSVQVLSD--------- 119
+ +G A + E + SS +F +LSD
Sbjct: 196 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPN 255
Query: 120 ------LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLELMENT 171
L+DAYG+ F E+ S + Q+ + D P+ ++ + FG GQ+E+MEN
Sbjct: 256 TITYNTLIDAYGKAKMFVEMESTLIQMLGED-DCKPDSWTMNSTLRAFGGNGQIEMMENC 314
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
++ S G + T N + Y + G+ +M +++ + V + +
Sbjct: 315 YEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGR 374
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
+ R + R + L+ +Y K + + + DL
Sbjct: 375 AGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVF 434
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
FN A+ RM F ++ LE M+ + PD +TY +V AY
Sbjct: 435 FNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAY 477
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 116/294 (39%), Gaps = 42/294 (14%)
Query: 29 GDLARKIIRYRKQEGFVDCASLVEDLGRKKK-PHLAHQLVNTVKSEGLLPDNSTLCALML 87
D+ R+ IR + +L++ G+ K + L+ + + PD+ T+ + +
Sbjct: 245 SDMRRQGIR----PNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLR 300
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ NG + + +E+ SS +++ + L+D+YG+ G + ++ ++++ + +
Sbjct: 301 AFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSW 360
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I FG+ G L+ ME + M S T L + AY
Sbjct: 361 TIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVT-------------LCSLVRAY 407
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
GR ++ DK +G LR + L + +N L+ +Y
Sbjct: 408 GRASKA----DK------------------IGGVLRFIENSDIRLDLVFFNCLVDAYGRM 445
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
K ++ M + GF PD T+ A+ M H+ H ESVG
Sbjct: 446 EKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGM--TTHVKELHGVVESVG 497
>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
C-169]
Length = 1226
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 112/249 (44%), Gaps = 26/249 (10%)
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160
VWE++ V +V + L+D YG++G + + + ++ ++ + + + Y+ +
Sbjct: 193 VWEDMQRDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACN 252
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
GQ + +EM + G ++++ + NA I +S+ G L ++ Y R ++ +
Sbjct: 253 TSGQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTY------RQMVQQG 306
Query: 221 GIRAV----SFTYLKER--------KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
R+V S E+ +FF E L+D R ++ + +N L+ + A
Sbjct: 307 CERSVITYSSLISACEKSGEWQLALRFF--DECLKDN--CRPNV--ITFNSLITACAQGA 360
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL-SLEHMKHESVGPDLVTY 327
+ + + F M + G PD+ T+ A+ R W L L + + M+ + PD + Y
Sbjct: 361 QWEKARELFELMQQQGCTPDVVTYTALISAYERGGK-WQLALQAFQAMQAKGCKPDSIVY 419
Query: 328 GCVVDAYLD 336
++D D
Sbjct: 420 NAIIDTLWD 428
>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 889
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 119/299 (39%), Gaps = 4/299 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL P ST +L++ + NG + EA + +++ ++ + L+D + + G
Sbjct: 506 GLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGA 565
Query: 134 ISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
S+ ++ R + P+V +S I KQG +E N EM+ +G ++ N+ I
Sbjct: 566 QSLWGEMERRG--IFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLI 623
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
+ + G L E ++ L D + K+ + D+
Sbjct: 624 CGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLS 683
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ +N L+ Y F M + RM +G +PDLTT+NIR F L
Sbjct: 684 PDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLM 743
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK 370
L+ + + P+ VTY +++ L R + + + P V T + F K
Sbjct: 744 LDELVSAGIVPNTVTYNSMLNGVCSDILDRAMILTARLLKMAFVPNVVTANLLLSQFYK 802
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 102/269 (37%), Gaps = 6/269 (2%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
+GL P +++ Y+ G +A ++ ++ S S L+ G E
Sbjct: 470 KGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQE 529
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+I Q+ + + ++ + F K+G + ++ EM RG D +AFI
Sbjct: 530 ATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFID 589
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLGEFLRDVGLGR 249
S+ G + E + + R + + ++ + K K L + +R GL
Sbjct: 590 GLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGL-L 648
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
D+ N+++ +M+S FM M + G PD+ T+N + + +
Sbjct: 649 PDI--FTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNAD 706
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+ M PDL TY + + R
Sbjct: 707 NLVNRMYASGSNPDLTTYNIRIHGFCSSR 735
>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
Length = 846
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 115/283 (40%), Gaps = 5/283 (1%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L + GL P +ST L++ N G + EAQ++ E ++S + LS + +D
Sbjct: 445 AFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTS-FTICLD 503
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
A R G N + ++ L P+ +S I+ + + EM +RG
Sbjct: 504 ASFREG--NAVCALKCWDDMGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGI 561
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
++ T N+ I R G++TE ++++ + D + +E K M+
Sbjct: 562 VPNNFTYNSIISALCRAGNMTEALKLQQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDN 621
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L D+ + +N ++ +Y M S +M AG PD+ T+NI +
Sbjct: 622 LLLDMCSNGLTPDTVTYNTIINAYCRAKDMNSAMNFMNKMLAAGCEPDIFTYNIWMHSLC 681
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNL 343
M L+ + PD VTY ++D L R +
Sbjct: 682 SNHMLNQAGKVLDELVAMGCPPDSVTYNTLMDGICSDVLDRAM 724
>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 3/238 (1%)
Query: 147 LLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
+LP++ YS + FGK +LE + LKEM S G D + N + +++ GS+ E
Sbjct: 41 ILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAM 100
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ +++ + + + + Y + ++ + + ++ + + +N+L+ +
Sbjct: 101 GVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVF 160
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
K + F M E P++ T+ A + + D L HM + V P
Sbjct: 161 GEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSS 220
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKMN-LDDSPVVSTDPYVFEAFGKGDFHSSSEAFL 381
Y V++AY L + MN + P V T + + F KG + SEA L
Sbjct: 221 KAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAIL 278
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 128/317 (40%), Gaps = 18/317 (5%)
Query: 29 GDLARKIIRYRKQEGFV-DCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
GD A + R + G + D + LVE G+ + +L+ ++S G PD ++
Sbjct: 26 GDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNV 85
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+ +A +G + EA V+ ++ + V + S L++ YGR G ++++ + ++ N
Sbjct: 86 LLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSN 145
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
+ Y+ I+ FG+ G + + +MV + T I + G L E
Sbjct: 146 TEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGK-GGLHE-- 202
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL-------LW 257
K+ ++++G+ S Y + + + + + + +
Sbjct: 203 ----DAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETY 258
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
N L+ +A K + ++M ++G + TFN AF + F + + M+
Sbjct: 259 NSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEK 318
Query: 318 ESVGPDLVTYGCVVDAY 334
PD T V+ Y
Sbjct: 319 ARCDPDEQTLEAVLSVY 335
>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 426
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 140/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G++
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVM 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ + L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTVSYSTLLTMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I +S+ G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG+ +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGSGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYSNVVEVFDKMRGLGYFPDSNVTALVLNAY 400
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + M+ V P+ V+Y ++ Y++
Sbjct: 67 FSRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVE 126
Query: 337 KR 338
+
Sbjct: 127 NK 128
>gi|357479161|ref|XP_003609866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510921|gb|AES92063.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 496
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 137/348 (39%), Gaps = 76/348 (21%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
D+ R+ Y+ +EG L+ LG+ +P AHQL + EG P AL+ Y
Sbjct: 126 DMLREQSFYQPREGTY--MKLIVLLGKSGQPQRAHQLFTAMIEEGCDPTPELYTALLAAY 183
Query: 90 ANNGFVLEA------------------------------------QVVWEELLSSSFVLS 113
+ + EA ++++EE+ S + +
Sbjct: 184 CRSNMIDEALSILDEMKNHPLCQPDVFTYSTLIKACVDIFKFELIELLYEEMAQRSIMPN 243
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLELMENT 171
+ +++ YG+ G F+++ ++ + ++AD P+V++ I FG GQ+++ME
Sbjct: 244 TVTQNIVLNGYGKAGMFDQMEKVLSGM-LQSADCKPDVWTMNTIIGVFGNMGQIDMMEKW 302
Query: 172 LKEMVSRGFSVDSATGNAFIIYY-------------------------SRFGSLTEMETA 206
++ + G ++ T N I Y S + ++ E
Sbjct: 303 YEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAE 362
Query: 207 YGRLKRSRHLIDK---EGIRAVSFTYLKERKFF----MLGEFLRDVGLGRK---DLGNLL 256
G K + ++ EG+RA + T+ K F + + + V L K L
Sbjct: 363 AGDAKNMEYTFNQMRSEGMRADTKTFCCLIKGFANAGLFHKVISSVQLAAKLEIPLNTAF 422
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+N +L + A + + R FMRM + D TT++I A+ + M
Sbjct: 423 YNAVLSACAKAEDLMEMDRVFMRMKDTQCPLDDTTYSIMVEAYRKEGM 470
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 16/314 (5%)
Query: 25 HPKNGDLARKIIRYRKQEG--FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
+ K GDL + +R+ G V S++ R+ A +L ++ EG+ PD T+
Sbjct: 341 YSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
A++ C A N + E + V E + + + V + LMD Y + G E + ++
Sbjct: 401 TAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRV 460
Query: 143 RNADLLPEV---YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199
++ V YS+ +C+ + L L N L +V + FS D T + + +
Sbjct: 461 KDIISWNTVIGGYSK--NCYANEA-LSLF-NLL--LVEKRFSPDERTVACVLPACASLSA 514
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
+ +G + R+ + D+ ++ Y K + D+ KDL + W +
Sbjct: 515 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDI--TSKDL--VSWTV 570
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
++ Y + K F +M +AG PD +F A S + + M+HE
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630
Query: 320 -VGPDLVTYGCVVD 332
+ P + Y C+VD
Sbjct: 631 KIEPTVEHYACIVD 644
>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 890
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 103/245 (42%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ K +A +L++ + ++PD T + G + A+ V+EE+ S
Sbjct: 324 SLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSK 383
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+V S +MD Y + + +++ +++ R+ L Y+ + + K G L+
Sbjct: 384 RVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGIYEKLGNLDEA 443
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
KEM G + D T NA + Y + G E+ + +K + +
Sbjct: 444 IEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMIDM 503
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y K F + R+ + R ++ + ++ ++ + N M+S M M E G P+
Sbjct: 504 YTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNGLMESSIMLLMAMMEKGIKPN 563
Query: 289 LTTFN 293
+ TFN
Sbjct: 564 VVTFN 568
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 21/308 (6%)
Query: 40 KQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
KQ G VD ++++ LGR + +LA L + EG + A++ + NG
Sbjct: 205 KQNGRVDKGKLVSAMIGTLGRLGEINLALGLFERARLEGYGSTVHSFSAMISAFGRNGRF 264
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--CFNEIISIIDQVSCRNADLLPE--V 151
+A ++ + S V +V + ++DA G G F+ ++ D++ L+P+
Sbjct: 265 PDAVDLFRSMSSWGVVPNVITYNSIIDA-GAKGEVSFDVVVKFYDEMIANG--LMPDRLT 321
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ +S +G E+ + L EM R D T N ++ + G + + +
Sbjct: 322 YNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMS 381
Query: 212 RSRHLIDKEGIRAVSFTYLK----ERKFFMLGEF-LRDVGLGRKDLGNLLWNLLLLSYAG 266
R + A+ Y K E + E LR V L R + +N L+ Y
Sbjct: 382 SKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDR-----VSYNTLVGIYEK 436
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ + M +G + D+ T+N + + M+ ++ E MK ++ P+ +T
Sbjct: 437 LGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLT 496
Query: 327 YGCVVDAY 334
Y ++D Y
Sbjct: 497 YSTMIDMY 504
>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 544
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 121/291 (41%), Gaps = 11/291 (3%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C L++ L +K A ++++ + + G++P+ T ++ Y++ G ++ A V+ EL
Sbjct: 204 CNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELF 263
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
++ + LM+ Y G + I ++D + + Y + + K+ +
Sbjct: 264 DRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAG 323
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
N L +M+ R + SA I G + E + R+ + + D + +
Sbjct: 324 EARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLI 383
Query: 227 FTYLKERKFF----MLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMS 281
KE K + + GEF R + +LL +N L+ ++ + + M
Sbjct: 384 HWLCKEGKVWEARKLFGEFERGA------IPSLLTYNTLIAGMCEKGELSEAGKLWDDMM 437
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
E G+ P+ T+N+ FS++ + LE M P+ TY +++
Sbjct: 438 EKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYAILIE 488
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ + +L Y+ M + + F + + G+ PD TT+ I + D ++
Sbjct: 237 VTYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDD 296
Query: 315 MKHESVGPDLVTYGCVVDAYL-DKRLG--RNL 343
M V P+ VTYG +V+AY +K+ G RNL
Sbjct: 297 MGENGVEPNEVTYGVMVEAYCKEKKAGEARNL 328
>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 729
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 148/356 (41%), Gaps = 36/356 (10%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ L +K + A L+ + GL T L+ Y G ++EA +WEE+++
Sbjct: 278 LINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRG 337
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
+V + +M + + G ++ + + +N L+P++ Y+ I F + G +
Sbjct: 338 VSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKN--LMPDIISYNTLIYGFCRLGNIGE 395
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR--AV 225
L E+ R S + T N I R G L ETA LK +I++ GI V
Sbjct: 396 AFILLDELRFRNLSFNIVTYNTLIDGLCRLGDL---ETA---LKLKEDMINR-GIHPDVV 448
Query: 226 SFTYL-----KERKFFMLGEFLRD---VGLGRKDL---GNLLWNLLLLSYAGNFKMKSLQ 274
++T L K M EF + VGL ++ L L A FK LQ
Sbjct: 449 TYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFK---LQ 505
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
E M GF PD+ T+N+ ++ + L+ M + PD VTY + A+
Sbjct: 506 EE---MLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAH 562
Query: 335 LDK---RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFG-KGDFHSSSEAFLEFKRQ 386
++ R GR + + + ++ +P V T + A G + FLE + +
Sbjct: 563 MENGHLREGREIFYDM--LSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEK 616
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 48/209 (22%)
Query: 143 RNADLLPEVYSRA-----------ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
R DL+P++ R I+ K+G+L+ + ++EM G V T N I
Sbjct: 255 RALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLI 314
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
Y + G L E + L ++ R VS T
Sbjct: 315 CGYCKKGLLVE----------ALALWEEMVTRGVSPTVASH------------------- 345
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
N ++ + KM +++ M + PD+ ++N F R+ + +
Sbjct: 346 ------NTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFIL 399
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
L+ ++ ++ ++VTY ++D RLG
Sbjct: 400 LDELRFRNLSFNIVTYNTLIDGLC--RLG 426
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 123/303 (40%), Gaps = 25/303 (8%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++++ L + + AH L ++ + + PD T ++ + +G +A+ + +E+L
Sbjct: 258 TIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLER 317
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V S L++A+ + G F E + D++ R+ YS I F KQ +L+
Sbjct: 318 KINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAA 377
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
E+ ++G S D T N I Y R + + + H + + G+ A + T
Sbjct: 378 EHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDG-------IKLLHEMTEAGLVANTIT 430
Query: 229 YLK-ERKFFMLGEFLRDVGLGRKDLGN------LLWNLLLLSYAGNFKMKSLQREFMRMS 281
Y F +G+ L ++ + + + N LL N K+K F M
Sbjct: 431 YTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 490
Query: 282 EA-----------GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
++ G PD+ T+NI F + E M H + PD +TY +
Sbjct: 491 KSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550
Query: 331 VDA 333
+D
Sbjct: 551 IDG 553
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 118/312 (37%), Gaps = 48/312 (15%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A QL+ + + PD T AL+ + G EA+ +++E+L S + S S ++D
Sbjct: 307 AEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMID 366
Query: 123 AYGRI----------------GCFNEIISIIDQVS--CR------NADLLPEV------- 151
+ + GC +II+ ++ CR LL E+
Sbjct: 367 GFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVA 426
Query: 152 ----YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I F + G L ++ L+EM+S G + T N + G L + +
Sbjct: 427 NTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMF 486
Query: 208 GRLKRSRHLIDKE----GIRAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLL 256
+++S+ ID G+ TY + E KF E ++ +
Sbjct: 487 KAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTIT 546
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD-LHLSLEHM 315
++ ++ ++ + F M F PD+ TFN + + M D L L E M
Sbjct: 547 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCE-M 605
Query: 316 KHESVGPDLVTY 327
+ D +TY
Sbjct: 606 GQRGIVADAITY 617
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 100/261 (38%), Gaps = 5/261 (1%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P+ T LM G V+EA + + +L + ++D ++G +++
Sbjct: 180 PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNL 239
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ ++ + ++P V Y+ I K G+ N EM + D T N I +
Sbjct: 240 LRKME-EVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGF 298
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL-G 253
G ++ E + + D A+ ++KE KFF E L D L R +
Sbjct: 299 CISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFE-AEELYDEMLPRSIIPS 357
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ ++ ++ + ++ + + F G PD+ TFN + R D L
Sbjct: 358 TVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLH 417
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
M + + +TY ++ +
Sbjct: 418 EMTEAGLVANTITYTTLIHGF 438
>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 503
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 101/261 (38%), Gaps = 33/261 (12%)
Query: 75 LLPDNSTLCALMLCYANNGFVL-EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
+ PD+ T LM G L E ++++++ SV V + A+ G E
Sbjct: 134 VFPDSVTFSVLMNSAVKGGGSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEA 193
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ I ++ N +Y+ I +G+ GQLE E + EM RG + T NA I
Sbjct: 194 LLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALI-- 251
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
T Y K R + EG L E + GL D+
Sbjct: 252 -----------TGYLEAKPKRQFVVAEG----------------LIEEMEASGL-YPDV- 282
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ + +LL +Y + ++ F RM G P+ ++ A++ + E
Sbjct: 283 -VTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFE 341
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
++ + V P + TY ++DAY
Sbjct: 342 MIRKQGVNPTVETYTALLDAY 362
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 117/278 (42%), Gaps = 15/278 (5%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ P S + + + G + EA ++ E+ + +V + + L+DAYGR+G E
Sbjct: 169 GISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEA 228
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCF---GKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
++ ++ R Y+ I+ + + Q + E ++EM + G D T
Sbjct: 229 EGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTML 288
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER---KFFMLGEFLRDVGL 247
+ Y G + E + R+K + A+ Y + R K E +R G+
Sbjct: 289 LGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGV 348
Query: 248 GRKDLGNLLWNLLLLSY--AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ + LL +Y AG+ +M +Q + M G T+ AF + +
Sbjct: 349 ---NPTVETYTALLDAYRRAGDLEM--VQAVWKSMKVEGCVATRVTYMTILDAFQKQGRY 403
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNL 343
+ +E K++ PDL+ Y ++++Y+ R GR++
Sbjct: 404 KEARDLIEEFKNQGHKPDLMVYNMLLNSYM--RGGRHV 439
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 108/264 (40%), Gaps = 19/264 (7%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY----ANNGFVLEAQVVWEEL 105
L++ GR + A L+ ++ G+ P+ T AL+ Y FV+ A+ + EE+
Sbjct: 215 LIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVV-AEGLIEEM 273
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
+S V + L+ AYG G + + +++ R Y+ I+ + ++
Sbjct: 274 EASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCP 333
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E + + +G + T A + Y R G L ++ + +K EG A
Sbjct: 334 EKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMK-------VEGCVAT 386
Query: 226 SFTYLKERKFFM-LGEF--LRDVGLGRKDLGN----LLWNLLLLSYAGNFKMKSLQREFM 278
TY+ F G + RD+ K+ G+ +++N+LL SY + +
Sbjct: 387 RVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILL 446
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRM 302
M AGF PD T+ F R+
Sbjct: 447 EMKTAGFLPDSFTYCTLIYGFLRV 470
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L+ ++ P A + ++ +G+ P T AL+ Y G + Q VW+ +
Sbjct: 321 TALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKV 380
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR--NADLLPEVYSRAISCFGKQGQL 165
V + ++DA+ + G + E +I++ + DL+ VY+ ++ + + G+
Sbjct: 381 EGCVATRVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLM--VYNMLLNSYMRGGRH 438
Query: 166 ELMENTLKEMVSRGFSVDSAT 186
+ L EM + GF DS T
Sbjct: 439 VKASDILLEMKTAGFLPDSFT 459
>gi|413926925|gb|AFW66857.1| hypothetical protein ZEAMMB73_570381 [Zea mays]
Length = 487
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 118/288 (40%), Gaps = 15/288 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L + GL P +ST L++ N + EAQ++ E ++S + LS + +D
Sbjct: 141 ASELYRIINKLGLTPSSSTFNYLIMGLCNQVRLDEAQLLLEHMVSKGYCLSTS-FTICLD 199
Query: 123 AYGRIG-------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
AY R G C++++ I Q D + +S I+ + + EM
Sbjct: 200 AYFRDGNAVGALKCWDDMGKIDLQT-----DFI--AFSAYINGRSRLDYVNEAYQAFAEM 252
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
SRG ++ T N+ I + G++TE +++S + D + +E K
Sbjct: 253 TSRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPDIYTSNILIDGLCREGKL 312
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
M+ L D+ + +N ++ +Y M S +M AG PD+ T+NI
Sbjct: 313 KMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIW 372
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNL 343
+ R M L+ + P+ VTY ++D L R +
Sbjct: 373 MHSLYRNHMLNQAGKLLDELVAVDCSPNSVTYNTLMDGICSDVLDRAM 420
>gi|413951894|gb|AFW84543.1| hypothetical protein ZEAMMB73_135692 [Zea mays]
Length = 575
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 118/288 (40%), Gaps = 15/288 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L + GL P +ST L++ N + EAQ++ E ++S + LS + +D
Sbjct: 141 ASELYRIINKLGLTPSSSTFNYLIMGLCNQVRLDEAQLLLEHMVSKGYCLSTS-FTICLD 199
Query: 123 AY-------GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
AY G + C++++ I Q D + +S I+ + + EM
Sbjct: 200 AYFRDGNAVGALKCWDDMGKIDLQT-----DFI--AFSAYINGRSRLDYVNEAYQAFAEM 252
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
SRG ++ T N+ I + G++TE +++S + D + +E K
Sbjct: 253 TSRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPDIYTSNILIDGLCREGKL 312
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
M+ L D+ + +N ++ +Y M S +M AG PD+ T+NI
Sbjct: 313 KMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIW 372
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNL 343
+ R M L+ + P+ VTY ++D L R +
Sbjct: 373 MHSLYRNHMLNQAGKLLDELVAVDCSPNSVTYNTLMDGICSDVLDRAM 420
>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
Length = 625
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 134/349 (38%), Gaps = 33/349 (9%)
Query: 5 SLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAH 64
SL + KF+ FN Q+ K G L + +Y GFVD V +A
Sbjct: 92 SLFIDKRGKFRSFNF-KKQSRKKGGSLRGRGWKY--GSGFVDGIFPVMS-------PIAQ 141
Query: 65 QLVNTVKSE-----------GLLPDNSTLCALMLCYANNGFVLEAQVVWEELL------- 106
Q+++ V+ E L P+++T ++ N L W+ ++
Sbjct: 142 QILDFVQKEERSNRIWGSLDSLSPNHTTWDDII----NVAVQLRLNKQWDAIVLICGWIL 197
Query: 107 -SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
SSF V + L+DAYG+ + + S ++ + Y+ + + G L
Sbjct: 198 YRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLL 257
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E E EM GF + NA+I + G + + R+KR R +
Sbjct: 258 EKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTML 317
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y K K +M + ++ + + L+ ++A + + F ++ EAG
Sbjct: 318 INLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGL 377
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD+ +N A+SR + M+H PD +Y +VDAY
Sbjct: 378 EPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 426
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 123/302 (40%), Gaps = 10/302 (3%)
Query: 27 KNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM 86
K ++ ++ R R Q L+ G+ K ++A ++ + ++S+ P+ T AL+
Sbjct: 294 KAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALV 353
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG---CFNEIISIIDQVSCR 143
+A G +A+ ++E+L + V + LM+AY R G EI S++ + C
Sbjct: 354 NAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCE 413
Query: 144 NADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
P+ Y+ + +G+ G E + + M G + + + YSR G +
Sbjct: 414 -----PDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVA 468
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
+ E ++ +S D + ++ Y + +F + E L + G +N+L+
Sbjct: 469 KCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILI 528
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
Y ++ F + PD+ T+ R A+SR + E M
Sbjct: 529 NIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCY 588
Query: 322 PD 323
PD
Sbjct: 589 PD 590
>gi|255574996|ref|XP_002528404.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532192|gb|EEF33997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 955
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/273 (18%), Positives = 112/273 (41%), Gaps = 2/273 (0%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-LSSSFVLSVQVLSDLM 121
A +L +K G+ D ++ Y G + +A V + + + + + D++
Sbjct: 628 AEKLYQQLKCSGIALDMVAFSIVVRMYVKAGSLKDACSVLATMEKQENIIPDIYLYRDML 687
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
Y + G +++ + ++ D E+Y+ I+C + + + EM+ RGFS
Sbjct: 688 RIYQQCGMMSKLKDLYHKILKSEVDWDQELYNCIINCCARALPVGELSRLFSEMLQRGFS 747
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
++ T N + Y + + + + + R R L+D V Y + F +
Sbjct: 748 PNTITFNVMLDVYGKAKLFNKAKELFW-MARKRGLVDVISYNTVIAAYGHNKDFKNMASA 806
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+R++ + +N +L Y +M+ + RM ++ + D T+NI +
Sbjct: 807 VRNMQFDGFSVSLEAYNCMLDGYGKEGQMECFRNVLQRMKQSSYTSDHYTYNIMINIYGE 866
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ L ++ + PDL +Y ++ AY
Sbjct: 867 QGWIDEVAGVLTELRECGLRPDLCSYNTLIKAY 899
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/323 (19%), Positives = 124/323 (38%), Gaps = 46/323 (14%)
Query: 85 LMLCYANNGFVLEAQV-VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
L++C LE+ V ++ ++ S ++ + ++D Y +GCF E + Q+ C
Sbjct: 579 LLICSCKELGNLESAVRIYTQMPKSEDKPNLHISCTVIDIYSVLGCFAEAEKLYQQLKCS 638
Query: 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR-GFSVDSATGNAFIIYYSRFGSLTE 202
L +S + + K G L+ + L M + D + Y + G +++
Sbjct: 639 GIALDMVAFSIVVRMYVKAGSLKDACSVLATMEKQENIIPDIYLYRDMLRIYQQCGMMSK 698
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
++ Y ++ +S D+E L+N ++
Sbjct: 699 LKDLYHKILKSEVDWDQE-----------------------------------LYNCIIN 723
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
A + L R F M + GF P+ TFN+ + + +F + L M +
Sbjct: 724 CCARALPVGELSRLFSEMLQRGFSPNTITFNVMLDVYGKAKLF-NKAKELFWMARKRGLV 782
Query: 323 DLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY--VFEAFGKGDFHSSSEAF 380
D+++Y V+ AY + +N+ + M D VS + Y + + +GK
Sbjct: 783 DVISYNTVIAAYGHNKDFKNMASAVRNMQFDGFS-VSLEAYNCMLDGYGKEGQMECFRNV 841
Query: 381 LEFKRQRK-----WTYRKLIAVY 398
L+ +Q +TY +I +Y
Sbjct: 842 LQRMKQSSYTSDHYTYNIMINIY 864
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/184 (18%), Positives = 80/184 (43%), Gaps = 1/184 (0%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
V++ I ++G + L + M+ G + AT + Y + ++ E E + ++
Sbjct: 263 VFNTLIYACSRRGNMLLGGKWFRMMLELGVQPNIATFGMLMGLYQKGWNVEEAEFVFSKM 322
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
RS +I + A+ Y + + E + +G + + W +LL +Y+ ++
Sbjct: 323 -RSFGIICQSAYSAMITIYTRLSLYNKAEEIIGLMGEDKVAMNVENWLVLLNAYSQQGRL 381
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ ++ + M EA F P++ FN + ++S +++ + PD TY +
Sbjct: 382 EEAEQVLVEMQEASFSPNIVAFNTLITGYGKLSNMAAAQRLFLDIQNAGLEPDETTYRSM 441
Query: 331 VDAY 334
++ +
Sbjct: 442 IEGW 445
>gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 510
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 4/253 (1%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
E P+ T L+ +A +G V + ++++L S V + +MDAYG+ G E
Sbjct: 202 ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKE 261
Query: 133 IISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
+ +++ ++ R+ + P++ ++ I +GK+ + E ME T K ++ T N+
Sbjct: 262 MEAVLTRM--RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSM 319
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
II Y + + + E + ++ ++ + Y E +VG +
Sbjct: 320 IINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDR 379
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
L N +L Y N + F S HPD +T+ A+++ M + +
Sbjct: 380 VLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQI 439
Query: 311 SLEHMKHESVGPD 323
++ M+ + + P+
Sbjct: 440 LMKKMEKDGIVPN 452
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 45/247 (18%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VYS+ IS GK+GQ + EM + G D++ NA I
Sbjct: 135 VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALI------------------- 175
Query: 211 KRSRHLIDKEGIRAVSFT--YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+ HL ++ +A+ YL + K G+ R + +N+LL ++A +
Sbjct: 176 --TAHLHTRDKAKALEKVRGYLDKMK-----------GIERCQPNVVTYNILLRAFAQSG 222
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
K+ + F + + PD+ TFN A+ + M ++ L M+ PD++T+
Sbjct: 223 KVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFN 282
Query: 329 CVVDAYLDKRLGRNLDFGL-SKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQR 387
++D+Y K+ ++ S M + P + T + +GK +E
Sbjct: 283 VLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAE--------- 333
Query: 388 KWTYRKL 394
W ++K+
Sbjct: 334 -WVFKKM 339
>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like, partial [Cucumis sativus]
Length = 312
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 121/282 (42%), Gaps = 28/282 (9%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
++ K H+A + + ++++ P+ T AL+ A G +A+ ++E++ + + V
Sbjct: 8 QESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVY 67
Query: 116 VLSDLMDAYGRIG---CFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMEN 170
+ LM++Y R G EI S++ + C P+ Y+ + +G+ G E +
Sbjct: 68 AYNALMESYSRAGFPYGAAEIFSLMQHMGCE-----PDRASYNIMVDAYGRAGLHEDAQA 122
Query: 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230
+EM G + + + YS G++ + E G++ +S G++ +F
Sbjct: 123 VFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKS-------GLKPDTFVMN 175
Query: 231 KERKFF-MLGEF--LRDV------GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ LG+F + D+ G R D+ +N+L+ Y ++ ++ F +
Sbjct: 176 SMLNLYGRLGQFGKMEDLFSTMQKGPCRADIST--YNILINVYGRAGFVERMEELFQLLP 233
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
PD+ T+ R A+SR ++ E M PD
Sbjct: 234 AKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPD 275
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P+ A ++ + ++ G PD ++ ++ Y G +AQ V+EE+
Sbjct: 71 ALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRI 130
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+++ L+ AY G + II Q+ + L P+ V + ++ +G+ GQ
Sbjct: 131 GITPTMKSHMLLLSAYSSAGNVAKCEDIIGQM--HKSGLKPDTFVMNSMLNLYGRLGQFG 188
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
ME+ M D +T N I Y R G + ME
Sbjct: 189 KMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERME 226
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 6/150 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V+ GR A + +K G+ P + L+ Y++ G V + + + ++ S
Sbjct: 107 MVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSG 166
Query: 110 FVLSVQVLSDLMDAYGRIGCF---NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
V++ +++ YGR+G F ++ S + + CR AD+ Y+ I+ +G+ G +E
Sbjct: 167 LKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCR-ADI--STYNILINVYGRAGFVE 223
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
ME + + ++ D T + I YSR
Sbjct: 224 RMEELFQLLPAKNLEPDVVTWTSRIGAYSR 253
>gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g39620, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2453; Flags: Precursor
gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana]
gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana]
gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana]
gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 563
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 4/253 (1%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
E P+ T L+ +A +G V + ++++L S V + +MDAYG+ G E
Sbjct: 202 ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKE 261
Query: 133 IISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
+ +++ ++ R+ + P++ ++ I +GK+ + E ME T K ++ T N+
Sbjct: 262 MEAVLTRM--RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSM 319
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
II Y + + + E + ++ ++ + Y E +VG +
Sbjct: 320 IINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDR 379
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
L N +L Y N + F S HPD +T+ A+++ M + +
Sbjct: 380 VLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQI 439
Query: 311 SLEHMKHESVGPD 323
++ M+ + + P+
Sbjct: 440 LMKKMEKDGIVPN 452
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 45/247 (18%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VYS+ IS GK+GQ + EM + G D++ NA I
Sbjct: 135 VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALI------------------- 175
Query: 211 KRSRHLIDKEGIRAVSFT--YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+ HL ++ +A+ YL + K G+ R + +N+LL ++A +
Sbjct: 176 --TAHLHTRDKAKALEKVRGYLDKMK-----------GIERCQPNVVTYNILLRAFAQSG 222
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
K+ + F + + PD+ TFN A+ + M ++ L M+ PD++T+
Sbjct: 223 KVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFN 282
Query: 329 CVVDAYLDKRLGRNLDFGL-SKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQR 387
++D+Y K+ ++ S M + P + T + +GK +E
Sbjct: 283 VLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAE--------- 333
Query: 388 KWTYRKL 394
W ++K+
Sbjct: 334 -WVFKKM 339
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 113/269 (42%), Gaps = 8/269 (2%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
++D + + G N+ + +++ R Y+ ++ K ++ E L++MV +G
Sbjct: 222 VIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKG 281
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
D+ T N+ I YS G E ++ L D + ++ + K K
Sbjct: 282 VLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDAR 341
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+ + + + + ++L YA + L F M G PD FN+ A+
Sbjct: 342 DVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAY 401
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN--LDD--S 355
++ M + M+ + V PD+VTY V+ A R+G+ +D + K N +D +
Sbjct: 402 AKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALC--RIGK-MDDAVEKFNQMIDQGVA 458
Query: 356 PVVSTDPYVFEAFGK-GDFHSSSEAFLEF 383
P +ST ++ + F GD + + L+
Sbjct: 459 PSISTYHFLIQGFCTHGDLLKAKDLVLQM 487
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/336 (19%), Positives = 131/336 (38%), Gaps = 42/336 (12%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V L + + A ++ + +G+LPDN T +L+ Y++ G EA V +++ S
Sbjct: 257 VVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQG 316
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ V L+ LM + + G + + D ++ + Y ++ + +G L +
Sbjct: 317 ILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLT 376
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS---------------- 213
M+S G + DS N I Y++ G L + ++
Sbjct: 377 ELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAAL 436
Query: 214 -------------RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL--------GRKDL 252
+ID+ ++S + + F G+ L+ L R D+
Sbjct: 437 CRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDI 496
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
G +N ++ + ++ Q F G HP++ +N + + +
Sbjct: 497 G--CFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVF 554
Query: 313 EHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348
+ M + P++V YG +V+ Y ++GR +D GLS
Sbjct: 555 DVMVSAGIQPNVVVYGTLVNGYC--KVGR-IDEGLS 587
>gi|410110091|gb|AFV61125.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
micrantha]
Length = 406
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 24 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 83
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 84 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 143
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ I +GK
Sbjct: 144 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGK 203
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 204 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 263
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 264 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 319
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 320 DAGEAKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAY 372
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 50/259 (19%), Positives = 105/259 (40%), Gaps = 4/259 (1%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 124 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 183
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + ++ YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 184 RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 243
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 244 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 303
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
E ++ + + D G KD+ + LLS K ++ F +M G+
Sbjct: 304 GAGRIEEATYVFRQAI-DAGEA-KDITVFERMIHLLSKYK--KYSNVVEVFDKMRGLGYF 359
Query: 287 PDLTTFNIRAVAFSRMSMF 305
PD + A+ ++ F
Sbjct: 360 PDSNVIAVVLNAYGKLQEF 378
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 39 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 98
Query: 337 KR 338
+
Sbjct: 99 NK 100
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 129/326 (39%), Gaps = 34/326 (10%)
Query: 27 KNGDLA--RKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K GDLA R ++ K G V SL++ G+ + +LV ++ G PD
Sbjct: 206 KEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVV 265
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T AL+ C+ G + A + E+ + +V S +DA+ + G E + + Q+
Sbjct: 266 TYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQM 325
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ Y+ + K G+L+ EMV +G ++ T + + G +
Sbjct: 326 RMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKV 385
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----------KERKFFMLGEFLRDVG--L 247
E E + L+++ GIRA Y ER +L E ++D G L
Sbjct: 386 AEAEDVF-------RLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSE-MKDKGMEL 437
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF-NIRAVAFSRMSMFW 306
G L+W L L K+ + +M E G P+ + NI F
Sbjct: 438 DVSLYGALIWGLCNLQ-----KLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESE 492
Query: 307 DLHLSLEHMKHESVGPDLVTYGCVVD 332
+ L L+ M P++VTY +VD
Sbjct: 493 AIAL-LQKMMDSGFRPNIVTYCALVD 517
Score = 37.7 bits (86), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 8/182 (4%)
Query: 27 KNGDLARKIIRYRKQEGF-VDCA---SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
KN + A ++ K +G +D + +L+ L +K A L+N + GL P+N
Sbjct: 418 KNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIY 477
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
+M EA + ++++ S F ++ L+D + G +E IS +++
Sbjct: 478 TNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMV- 536
Query: 143 RNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ L P V Y+ + K G+L+ L EM+ +G S+D+ + + + + G+L
Sbjct: 537 -DLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNL 595
Query: 201 TE 202
+
Sbjct: 596 QD 597
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 121/285 (42%), Gaps = 20/285 (7%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L ++ + A +L+N ++ G+ PD T L+ Y G A +++ LL
Sbjct: 372 TLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQ 431
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
V + L+D R G + + D + R ++LP YS I ++GQ+E
Sbjct: 432 RLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAR--EILPNHITYSILIDSHCEKGQVE 489
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L EMV +G + T N+ I Y R G++ + + ++++ D +
Sbjct: 490 DAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLI 549
Query: 227 FTYLKERKFFMLGEF----LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
Y+KE M G F + + + R D + +N+++ ++ M+ R F M +
Sbjct: 550 HGYIKEEN--MHGAFNVFNIMEKEMVRPDA--VTYNMIINGFSEQGNMQDAGRVFKGMGD 605
Query: 283 AGFHPDLTTF----NIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+G PD T+ N A + F LH + M H PD
Sbjct: 606 SGIEPDRYTYMSLINGHVTAGNSKQAF-QLH---DEMIHRGFAPD 646
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 106/277 (38%), Gaps = 39/277 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A LV+++ + GL P T +++ + +A+ V+ + S V+ + L+
Sbjct: 211 AIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIG 270
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ R+G E + ++ R + P+V +S I F ++G+++ L+EM G
Sbjct: 271 GFCRVGEVKEAVKFYKEMQHRY--VTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGL 328
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
D I + R GS++E L+ R +
Sbjct: 329 VPDGVIYTMVIGGFCRAGSMSEA--------------------------LRVRDEMVGFG 362
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L DV + +N LL ++ ++ M E G PDL TF +
Sbjct: 363 CLPDV---------VTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYC 413
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
R F + + + + + PD+VTY ++D K
Sbjct: 414 RQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRK 450
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 73/350 (20%), Positives = 130/350 (37%), Gaps = 54/350 (15%)
Query: 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134
+ PD + L+ ++ G + A E+ V + + ++ + R G +E +
Sbjct: 293 VTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEAL 352
Query: 135 SIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+ D++ LP+V Y+ ++ KQ +L E L EM RG + D T I
Sbjct: 353 RVRDEMV--GFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIH 410
Query: 193 YYSRFG-------------------------SLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
Y R G SL + G L ++ L D R +
Sbjct: 411 GYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILP 470
Query: 228 TYLK--------------ERKFFMLGEFLRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKS 272
++ E F L E ++ + +L N+ +N ++ Y + +K
Sbjct: 471 NHITYSILIDSHCEKGQVEDAFGFLDEMVK-----KGNLPNIRTYNSIIKGYCRSGNVKK 525
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
Q+ +M + PDL TFN + + M+ E V PD VTY +++
Sbjct: 526 GQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIIN 585
Query: 333 AYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHS--SSEAF 380
+ ++ G D G + DS + D Y + + G + S +AF
Sbjct: 586 GFSEQ--GNMQDAGRVFKGMGDSG-IEPDRYTYMSLINGHVTAGNSKQAF 632
>gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic [Vitis vinifera]
gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 50/261 (19%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VYS+ IS GK+GQ + EM + G D++ NA I
Sbjct: 136 VYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALI------------------- 176
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ HL ++ +A+ LG F + G+ R + +N+LL ++A +
Sbjct: 177 --TAHLHSRDKSKAL---------IKALGYFDKMKGMERCKPNIVTYNILLRAFAQAQNV 225
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
F ++E+ PD+ TFN A+ + M ++ L MK PD++T+ +
Sbjct: 226 NQANALFKELNESIVSPDIFTFNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNVL 285
Query: 331 VDAYLDKRLGRNLDFG------LSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFK 384
+D+Y GR +F S + + P + T + +GK +E FK
Sbjct: 286 IDSY-----GRRQEFDKMEQVFKSLLRSKEKPTLPTFNSMITNYGKARLKEKAENV--FK 338
Query: 385 RQRKW-------TYRKLIAVY 398
+ TY LI +Y
Sbjct: 339 KMTDMGYAPNFITYESLIMMY 359
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 122/298 (40%), Gaps = 17/298 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN----GFVLEAQVVWE 103
+ L+ +G+K + +A L + +++ G PD S AL+ + ++ +++A ++
Sbjct: 138 SKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALIKALGYFD 197
Query: 104 ELLSSSFV-LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFG 160
++ ++ + L+ A+ + N+ ++ +++ + + P++++ + +G
Sbjct: 198 KMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELN--ESIVSPDIFTFNGVMDAYG 255
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K G ++ ME+ L M S D T N I Y R +ME + L RS+
Sbjct: 256 KNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEKPTLP 315
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG---NLLWNLLLLSYAGNFKMKSLQRE- 276
++ Y K R L E +V D+G N + L+ G S RE
Sbjct: 316 TFNSMITNYGKAR----LKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCDCISRAREI 371
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F M + ++T N + + + L LE + P TY + AY
Sbjct: 372 FDEMMASKKEMKVSTLNAMLEVYCMNGLPMEADLLLERARKNRPFPGSSTYKLLYKAY 429
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 120/300 (40%), Gaps = 5/300 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVL--SDLMDAYGRIGCFN 131
G +PD + L+ + G +A + + V S V+ + ++D + + G N
Sbjct: 181 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVN 240
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ + ++ R YS + K + E L++MV++G D+ T N I
Sbjct: 241 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLI 300
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
YS G E + ++R L D + + + K K + + + ++
Sbjct: 301 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQN 360
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ ++L YA + + F M G PD+ TF++ A++ M +
Sbjct: 361 PDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMII 420
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
M+ V PD+VTY V+ A R+G+ +D + K N V+ D Y + +G
Sbjct: 421 FNEMRDHGVKPDVVTYTTVIAALC--RIGK-MDDAMEKFNQMIDQGVAPDKYAYHCLIQG 477
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/359 (21%), Positives = 147/359 (40%), Gaps = 42/359 (11%)
Query: 27 KNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM 86
K DL +++++ V +S+V L + + A + + ++G+LPDN T L+
Sbjct: 241 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLI 300
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
Y++ G EA V++E+ S + V L+ LM + + G E + D ++ + +
Sbjct: 301 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQN 360
Query: 147 LLPEVYSRAI--SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL---- 200
P+V+S I + + +G L M + M+ G + D T + I Y+ G L
Sbjct: 361 --PDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAM 418
Query: 201 ------------------TEMETAYGRLKRSRHLIDK------EGIRAVSFTY-LKERKF 235
T + A R+ + ++K +G+ + Y + F
Sbjct: 419 IIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 478
Query: 236 FMLGEFLRDVGLGRKDLGN-LLWNLLLLSYAGN-----FKMKSLQREFMRMSEAGFHPDL 289
G L+ L + + N + +++ S N ++ Q F G HPD
Sbjct: 479 CTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDA 538
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348
+++ + + + M + P++V YG +V+ Y ++GR +D GLS
Sbjct: 539 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYC--KIGR-IDEGLS 594
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 119/303 (39%), Gaps = 34/303 (11%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLL--PDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
L++ L + K A L+ + G + PD ++ C+ G V +A +++E++
Sbjct: 192 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQ 251
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+ S ++ A + + + + Q+ N +LP+ Y+ I + GQ
Sbjct: 252 RGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMV--NKGVLPDNWTYNNLIYGYSSTGQW 309
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ KEM D T N + GSL + YG++K +R + D ++
Sbjct: 310 KEAVRVFKEMRRHSILPDVVTLNMLM------GSLCK----YGKIKEARDVFDTMAMKGQ 359
Query: 226 S---FTYLKERKFFMLGEFLRDVGLGRKDLGNLL-----------WNLLLLSYAGNFKMK 271
+ F+Y K + G + + DL +L+ +++L+ +YA +
Sbjct: 360 NPDVFSY----KIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLD 415
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
F M + G PD+ T+ A R+ D M + V PD Y C++
Sbjct: 416 KAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLI 475
Query: 332 DAY 334
+
Sbjct: 476 QGF 478
>gi|297792071|ref|XP_002863920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309755|gb|EFH40179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 498
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/329 (21%), Positives = 131/329 (39%), Gaps = 26/329 (7%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R+ + Y+ G L+ LG+ K+P AH+L + +EG + ++ AL+ Y
Sbjct: 141 ELLREQLWYKPNVGIY--VKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALLSAY 198
Query: 90 ANNGFVLEAQVVWEELLSS---------------SF--VLSVQVLSDLMDAYGRIGCFNE 132
+ +G A + E + SS SF V + + DL+ R+G
Sbjct: 199 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVHDLLSDMRRLGIRPN 258
Query: 133 IISIIDQVSC-----RNADLLPEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
I+ ++ S D P+ ++ + FG GQ+E+MEN ++ S G +
Sbjct: 259 TITFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIR 318
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T N + Y + G+ +M +++ + V + + + R +
Sbjct: 319 TFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLM 378
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
R + L+ +Y K + + + DL FN A+ RM F
Sbjct: 379 QSERIIPSCVTLCSLVRAYGRAGKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKF 438
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ LE M+ + PD +TY +V AY
Sbjct: 439 AEMKGVLELMEKKGFKPDKITYRTMVKAY 467
>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
Length = 882
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 15/291 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L++ L + + A + + E L+P+ T AL+ + G V + +++ +E+
Sbjct: 196 TALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEE 255
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+V V S ++D Y + G NE + ++ ++ RN +LP VY I + K Q
Sbjct: 256 KHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRN--ILPNVFVYGTLIDGYFKADQR 313
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ + KEM SRG ++ ++F+ R G + E + + + L D+ ++
Sbjct: 314 GIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSM 373
Query: 226 S---FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR--M 280
F KE F + + + + G + +N+L+ G FK+ + E M
Sbjct: 374 MDGFFKAGKESDAFNIAQEMTEKSSG---FDVVAYNVLI---NGLFKLGKYESESFHTGM 427
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ G PD TFN A+ + + L MK + P+ +T +V
Sbjct: 428 RQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILV 478
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 121/292 (41%), Gaps = 39/292 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ R + A +L+ +K+EG PD T LM + G + A+ + E+ +
Sbjct: 23 LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVN 82
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
+V + L+DAY + C + + + D+++ ++ L+P+V Y+ ++ K G++E
Sbjct: 83 LEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKS--LVPDVVTYTCIMNGLCKSGKVEE 140
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
++ +EM G + + I + G++ E GR+ ++ G V +
Sbjct: 141 AKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRM-----VVRGIGFDVVVY 195
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
T L + GL + + N + + F + E P
Sbjct: 196 TALMD-------------GLFKAGMAN-----------------NAEDMFQVLLEESLVP 225
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
+ T++ ++ L L+ M+ + + P+++ Y +VD Y K L
Sbjct: 226 NCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGL 277
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 108/279 (38%), Gaps = 20/279 (7%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALM---LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
A +L+N +KS GL P NS C ++ LC A G + + + ++L F +
Sbjct: 455 ALKLLNEMKSYGLKP-NSITCNILVQRLCAA--GEIEKTMDLLNDMLVMGFHPTPTTHKA 511
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
++DA + + I+ DQ+ L Y+ IS F + G + K+M+ +G
Sbjct: 512 VLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKG 571
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY------LKER 233
D T NA I Y L + + ++ EG+ TY L
Sbjct: 572 ILADIITYNALIHGYCISSHLKKAFAVHSQML-------TEGVSPNVETYNILLGGLSAA 624
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF-KMKSLQREFMRMSEAGFHPDLTTF 292
+ L + R + N +L+S G MK + + M GF P T+
Sbjct: 625 RLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTY 684
Query: 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
N+ F++ ++ M+ + P+ TY ++
Sbjct: 685 NVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
+EG+ P+ T L+ + + EA + ++ V + L+ +G+IG
Sbjct: 604 TEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMK 663
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
E + + ++ + Y+ ISCF K ++ + ++EM RG +S+T + I
Sbjct: 664 ECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723
Query: 192 IYYSRFGSLTEMETAYGRLKRS 213
+ + E+ + LKRS
Sbjct: 724 CGWYKLSKQPELNKS---LKRS 742
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 18/294 (6%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +L+ L + + L+ + + + G+ T ++ G + A+ ++ ++
Sbjct: 223 CNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMK 282
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
+ F + + L+D +G++G +E I I +Q+ ++AD P+V Y+ I+CF K +
Sbjct: 283 EAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM--KDADCDPDVITYNALINCFCKFER 340
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ L EM + G + T + FI + + G L E + ++R +
Sbjct: 341 MPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRV-------ALTP 393
Query: 225 VSFTYLK----ERKFFMLGEFLR---DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277
FTY K L E L+ ++ L + + LL +MK + F
Sbjct: 394 NEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVF 453
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M AG P+ T+ F + L+ MK + + PDL+ YG ++
Sbjct: 454 RAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 507
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 18/227 (7%)
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF V A +A I G L E + ++++ R A+ K + +
Sbjct: 184 GFGVFDALFSALI----ELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLS 239
Query: 239 GEFLRDVGLGRKDLGNLLWNLLL--LSYAGNFKM-KSLQREFMRMSEAGFHPDLTTFNIR 295
+F +D+G +N+++ L G+ +M +SL F +M EAGF PD+ T+N
Sbjct: 240 RKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSL---FTQMKEAGFTPDIVTYNSL 296
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDD 354
++ + + E MK PD++TY +++ + +R+ + +F L +M +
Sbjct: 297 IDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEF-LHEMKANG 355
Query: 355 -SPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR----QRKWTYRKLI 395
P V T +AF K G + + F++ +R ++TY LI
Sbjct: 356 LKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLI 402
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/287 (19%), Positives = 120/287 (41%), Gaps = 2/287 (0%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L + + A++L+ + S+G PDN T ++ G V EA+ ++ + S
Sbjct: 85 ALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSR 144
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ V + L+DA + G E + + + + P++ Y+ I F + + +
Sbjct: 145 GYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTD 204
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
K+++++G+ D+ T N+ ++ +R ++ E E + ++ S + V
Sbjct: 205 EAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVL 264
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+ + E ++ R LL N ++ K+ + MS+ G
Sbjct: 265 SGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAV 324
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
PD+ T+NI + ++ H M PD+V+Y V++
Sbjct: 325 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNG 371
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 100/264 (37%), Gaps = 2/264 (0%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
+G PD T ++ G V EA + EE+ V + ++D R G +E
Sbjct: 4 KGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDE 63
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+ ++ R Y+ I+ K +E L+EM S+G+ D+ T N +
Sbjct: 64 ADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILS 123
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG-RKD 251
R G ++E + + + + D + KE K + + + RK
Sbjct: 124 GLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKV 183
Query: 252 LGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+L+ +N L+ + K + F + G+ PD T+N + +R S +
Sbjct: 184 APDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEE 243
Query: 311 SLEHMKHESVGPDLVTYGCVVDAY 334
+ M P+ TY V+ +
Sbjct: 244 MFKKMVDSGCAPNGATYSIVLSGH 267
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 53/289 (18%), Positives = 117/289 (40%), Gaps = 6/289 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ L R K A Q +++ S G PD L+ G V EA +++ + +
Sbjct: 120 TILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMA 179
Query: 109 SFVLSVQVLS--DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
++ +++ L+D + R+ +E + + V + +P+ Y+ + ++
Sbjct: 180 DRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKG--YMPDTVTYNSILLGLARKSN 237
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
++ E K+MV G + + AT + + + R G++ Y + R D A
Sbjct: 238 MDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNA 297
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
V K +K + L ++ + +N+LL + F M + G
Sbjct: 298 VIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG 357
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
PD+ ++++ + + D + + M + PD+VT+ ++D
Sbjct: 358 CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDG 406
>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
Length = 894
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 130/321 (40%), Gaps = 14/321 (4%)
Query: 27 KNGDLARKIIRYRKQE------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD-- 78
+ GD+ R ++ + E V +++ LGRK L+ +K GL P+
Sbjct: 323 RRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQ 382
Query: 79 --NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
N+ + AL C + + +A V ++++S F V + L+ A+ R G E + +
Sbjct: 383 IYNTVIYALCKCRSAS----QALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKL 438
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ + R + Y+ I F +G++ + + L EM+ RG + D T A I
Sbjct: 439 LREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVV 498
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
G + E ++ + + D + K+R L ++ + +
Sbjct: 499 SGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFV 558
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+ L+ + + K+ ++ F M E G + D+ +N + + M + + + M+
Sbjct: 559 YTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMR 618
Query: 317 HESVGPDLVTYGCVVDAYLDK 337
PD TY ++D Y K
Sbjct: 619 KVGCIPDEFTYTTLIDGYAKK 639
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 116/312 (37%), Gaps = 27/312 (8%)
Query: 39 RKQEGFVD---CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
R +EG D +V L + + +L+ EG +P L+ Y G V
Sbjct: 268 RDREGGADDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDV 327
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
++ E+ + +V ++ GR +I S++ ++ R ++Y+
Sbjct: 328 GRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTV 387
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I K L +MV+ F D T N I + R G + E LK R
Sbjct: 388 IYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEA------LKLLRE 441
Query: 216 LIDKE-GIRAVSFTYLKERKFFMLGE-------FLRDVGLGRKD----LGNLLWNLLLLS 263
I +E +S+T L F + GE + +G G LG L+ L++
Sbjct: 442 AIRRELEPNQLSYTPLIH-GFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVV-- 498
Query: 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+G + RE +M+E PD +N+ + M L M + V PD
Sbjct: 499 -SGQVDEALMVRE--KMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPD 555
Query: 324 LVTYGCVVDAYL 335
Y ++D ++
Sbjct: 556 KFVYTTLIDGFI 567
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 62/324 (19%), Positives = 117/324 (36%), Gaps = 10/324 (3%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
D+ + C ++ G V E + + E V + L+D Y R G + ++
Sbjct: 275 DDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLL 334
Query: 138 DQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
++ + ++P V Y I G++ L +E+ L EM RG S + N I
Sbjct: 335 GEMEMKG--IMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALC 392
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL 255
+ S ++ ++ SR D + + +E + LR+ + L
Sbjct: 393 KCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQL 452
Query: 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315
+ L+ + ++ + M G PD+ T + + E M
Sbjct: 453 SYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKM 512
Query: 316 KHESVGPDLVTYGCVVDAYLDKRL---GRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGD 372
V PD Y ++ KR+ +NL + + + V T + + F + D
Sbjct: 513 AERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTT--LIDGFIRSD 570
Query: 373 FHSSSEAFLEFKRQRKWTYRKLIA 396
S + EF + K YR ++A
Sbjct: 571 KLSDARKIFEFM-EEKGGYRDIVA 593
>gi|255541334|ref|XP_002511731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548911|gb|EEF50400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 244
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRI--GCFNEIISIIDQVSCRNADLLPEV---------- 151
+++ SS++L LSDL+ ++ RI + +S++ Q+ L EV
Sbjct: 106 QIICSSYLLQNASLSDLLSSWVRIMKPRRTDWLSVLKQLKNMEHPLYLEVAKHALVEESF 165
Query: 152 ------YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
Y++ I C+GKQ QL+ E TL +M RGF VD T I YS+ G+L + E
Sbjct: 166 EANVRDYTKVIYCYGKQTQLQDAETTLLDMKKRGFVVDQVTLTTMIDMYSKAGNLNQAEE 225
Query: 206 AYGRLKRSRHLIDKE 220
+ LK H KE
Sbjct: 226 TFEELKLLAHPWIKE 240
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 18/243 (7%)
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRA 155
A+ ++ ++ + F + + L+D +G++G +E I I +Q+ ++AD P+V Y+
Sbjct: 75 ARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM--KDADCDPDVITYNAL 132
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I+CF K ++ L EM + G + T + FI + + G L E + ++R
Sbjct: 133 INCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRV-- 190
Query: 216 LIDKEGIRAVSFTYLK----ERKFFMLGEFLR---DVGLGRKDLGNLLWNLLLLSYAGNF 268
+ FTY K L E L+ ++ L + + LL
Sbjct: 191 -----ALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEG 245
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+MK + F M AG P+ T+ F + L+ MK + + PDL+ YG
Sbjct: 246 RMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYG 305
Query: 329 CVV 331
++
Sbjct: 306 TIL 308
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 240 EFLRDVGLGRKDLGNLLWNLLL--LSYAGNFKM-KSLQREFMRMSEAGFHPDLTTFNIRA 296
+F +D+G +N+++ L G+ +M +SL F +M EAGF PD+ T+N
Sbjct: 42 KFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSL---FTQMKEAGFTPDIVTYNSLI 98
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDD- 354
++ + + E MK PD++TY +++ + +R+ + +F L +M +
Sbjct: 99 DGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEF-LHEMKANGL 157
Query: 355 SPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR----QRKWTYRKLI 395
P V T +AF K G + + F++ +R ++TY LI
Sbjct: 158 KPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLI 203
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 106/288 (36%), Gaps = 31/288 (10%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
L P+ T +L+ G + EA + EE+L + L+V + L+D G E
Sbjct: 191 ALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEA 250
Query: 134 ISIIDQVSCRNADLLP--EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ + NA + P E Y+ + F K ++E ++ LKEM + D +
Sbjct: 251 EEVFRAM--LNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 308
Query: 192 IYYSRFGSLTEMETAYGRLKRS---------RHLID---KEGIRAVSFTYLKE------- 232
L E + G +K S L+D K G + T L+E
Sbjct: 309 WGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDG 368
Query: 233 ---RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM---RMSEAGFH 286
F + + L D L + + + + L+ GN K +LQ RM E G
Sbjct: 369 LCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALID--GNMKHGNLQEALNLRDRMIEIGME 426
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
DL + S L+ M + V PD V Y C++ Y
Sbjct: 427 LDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKY 474
>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 624
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/266 (19%), Positives = 110/266 (41%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
++ +K +G++ + T LM NG + +A+ +++E+ V V + L+
Sbjct: 281 VLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNC 340
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
R G + D+++ + Y I K G++ E + EM S+G ++
Sbjct: 341 RKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQV 400
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
N I Y R G + E Y +++ D ++ + + +++ ++L +
Sbjct: 401 VFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRM 460
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
G L + + L+ Y ++ +R F+ MS G P+ T+N+ A+ +
Sbjct: 461 MEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKI 520
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVV 331
+ +M+ + PD TY ++
Sbjct: 521 KEARKLRANMEANGMDPDSYTYTSLI 546
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 18/289 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SLV+ L R+ A Q++N + EG PD T ++ G + +A VV + +
Sbjct: 390 SLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVK 449
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
++ V + L+D Y + + + +++++ + P+V Y+ ++ K G+ +
Sbjct: 450 GYLPDVFTFNTLIDGYCKRLKLDSALQLVERM--WTYGIAPDVITYNSVLNGLCKAGKAK 507
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI--RA 224
+ T +EM+ +G ++ T N I F + ++E A G + R + ++G+ A
Sbjct: 508 EVNETFEEMILKGCRPNAITYNILI---ENFCKINQLEEASGVIVR----MCQDGLVPDA 560
Query: 225 VSFTYLKE---RKFFMLGEFLRDVGLGRKDLGNL--LWNLLLLSYAGNFKMKSLQREFMR 279
VSF L R + G +L L K +N+L+ +Y+ M+ ++ F
Sbjct: 561 VSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGE 620
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
M G+ PDL T+ I + + + L M + P + T+G
Sbjct: 621 MISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFG 669
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 116/291 (39%), Gaps = 10/291 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L + K A Q + + ++G +PD+ T ++ Y +G + EA + ++ +
Sbjct: 285 TLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFK 344
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
FV L++ G + + ++ + DL P+ VY+ + +QG +
Sbjct: 345 GFVPDRVTYCSLINGLCAEGDIERALELFNEAQAK--DLKPDLVVYNSLVKGLCRQGLIL 402
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ EMV G D T N I + G++++ +L D +
Sbjct: 403 HALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLI 462
Query: 227 FTYLKERKF---FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
Y K K L E + G+ D+ + +N +L K K + F M
Sbjct: 463 DGYCKRLKLDSALQLVERMWTYGIA-PDV--ITYNSVLNGLCKAGKAKEVNETFEEMILK 519
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G P+ T+NI F +++ + + M + + PD V++ ++ +
Sbjct: 520 GCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGF 570
>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
Length = 579
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ K+ L + +K+ G++PD T ++ Y G V +A ++E + +SS
Sbjct: 380 LGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPD 439
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
V + L++ G+ G +E + ++ + D P+V YS I CFGK ++E+ +
Sbjct: 440 VVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYD--PDVFTYSILIECFGKSNKVEMACSL 497
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM+S G + + T N + R G E Y +K ++G+ S TY
Sbjct: 498 FDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMK-------QQGLIPDSITY 548
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 140/339 (41%), Gaps = 34/339 (10%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + A Q+ +K + +PD T L+ G + ++E++S
Sbjct: 169 LLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 228
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
VL++ + +++A G+ +++I ++ ++ + YS + +GQL +
Sbjct: 229 CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLN 288
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L ++ SR ++ + + + + G +E + R+ S D++ ++
Sbjct: 289 EVL-DICSR--FMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVL 345
Query: 230 LKERK-------FFMLGE--FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMR 279
K M+ E + DVG+ +N++ S G K S + F +
Sbjct: 346 CNAEKTLEAIDLLHMMPEKGIVTDVGM---------YNMVF-SALGKLKQVSFISNLFDK 395
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
M G PD+ T+NI ++ R+ + E M+ S PD+VTY +++ L
Sbjct: 396 MKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINC-----L 450
Query: 340 GRNLDFGLSKMNLDDSPVVSTDPYVF------EAFGKGD 372
G++ D + M + DP VF E FGK +
Sbjct: 451 GKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSN 489
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 68/177 (38%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+Y+ S GK Q+ + N +M + G D T N I Y R G + + + +
Sbjct: 372 MYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVM 431
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ S D ++ K +++ D +++L+ + + K+
Sbjct: 432 EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKV 491
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ F M G P++ T+NI R + H E MK + + PD +TY
Sbjct: 492 EMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITY 548
>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
Length = 579
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ K+ L + +K+ G++PD T ++ Y G V +A ++E + +SS
Sbjct: 380 LGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPD 439
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
V + L++ G+ G +E + ++ + D P+V YS I CFGK ++E+ +
Sbjct: 440 VVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYD--PDVFTYSILIECFGKSNKVEMACSL 497
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM+S G + + T N + R G E Y +K ++G+ S TY
Sbjct: 498 FDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMK-------QQGLIPDSITY 548
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 140/339 (41%), Gaps = 34/339 (10%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + A Q+ +K + +PD T L+ G + ++E++S
Sbjct: 169 LLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 228
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
VL++ + +++A G+ +++I ++ ++ + YS + +GQL +
Sbjct: 229 CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLN 288
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L ++ SR ++ + + + + G +E + R+ S D++ ++
Sbjct: 289 EVL-DICSR--FMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVL 345
Query: 230 LKERK-------FFMLGE--FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMR 279
K M+ E + DVG+ +N++ S G K S + F +
Sbjct: 346 CNAEKTLEAIDLLHMMPEKGIVTDVGM---------YNMVF-SALGKLKQVSFISNLFDK 395
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
M G PD+ T+NI ++ R+ + E M+ S PD+VTY +++ L
Sbjct: 396 MKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINC-----L 450
Query: 340 GRNLDFGLSKMNLDDSPVVSTDPYVF------EAFGKGD 372
G++ D + M + DP VF E FGK +
Sbjct: 451 GKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSN 489
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 68/177 (38%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+Y+ S GK Q+ + N +M + G D T N I Y R G + + + +
Sbjct: 372 MYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVM 431
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ S D ++ K +++ D +++L+ + + K+
Sbjct: 432 EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKV 491
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ F M G P++ T+NI R + H E MK + + PD +TY
Sbjct: 492 EMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITY 548
>gi|410110103|gb|AFV61131.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
alba]
Length = 419
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L+ +K+ G++
Sbjct: 58 ELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVM 117
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ S+ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 118 PNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 177
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 178 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 237
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 238 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 297
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 298 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 353
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 354 DAGEVKDITVFERMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNAY 406
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 158 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 217
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 218 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 277
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 278 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 337
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 338 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYXNVVEVFDKMRGLGY 392
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD + A+ ++ F
Sbjct: 393 FPDSNVIAVVLNAYGKLQEF 412
>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 121/304 (39%), Gaps = 33/304 (10%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-L 106
+ L+ R P A +L+ + ++ GL P ++ + AL+ G V EA+ ++ E L
Sbjct: 237 SDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEFFL 296
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + + L+ Y +IG ++D++S YS + + + G+ E
Sbjct: 297 AGEIKPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWE 356
Query: 167 LMENTLKEMVSRGFSVDSATGNAFII-------YYSRFGSLTEMETAYGRLKRSRH---- 215
LKEM + G S + + + F L EM + ++ RH
Sbjct: 357 SARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHAS--GVQPDRHFYNV 414
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGE----FLRDVGLG-RKDLGNLLWNLLLLSYAGNFKM 270
+ID G K+ LG F R G G D+ + WN L+ ++ +
Sbjct: 415 MIDTFG------------KYNCLGHAMDVFNRMRGEGIEPDV--VTWNTLIDAHCKGGRH 460
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
F M E+ P TT+NI + + + MK + + P+++TY +
Sbjct: 461 DCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTL 520
Query: 331 VDAY 334
VD Y
Sbjct: 521 VDVY 524
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 8/150 (5%)
Query: 40 KQEGFVDC----ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K++G V +LV+ GR + A + +K++GL P + AL+ YA G
Sbjct: 506 KEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLA 565
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YS 153
A V + + + S VL+ L++A+G E S++ + + D P+V Y+
Sbjct: 566 DHALNVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFM--KENDFRPDVITYT 623
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVD 183
+ + Q + + +EM++ G + D
Sbjct: 624 TLMKALIRVEQFDKVPVIYEEMITSGCAPD 653
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 41/93 (44%)
Query: 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158
+ + E+ V ++ + L+D YGR G + E I I+ + P +Y ++
Sbjct: 499 ETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNA 558
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ ++G + N +K M + G + N+ I
Sbjct: 559 YAQRGLADHALNVVKAMRADGLEASTVVLNSLI 591
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ K+ L + +K+ G++PD T ++ Y G V +A ++E + +SS
Sbjct: 438 LGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPD 497
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
V + L++ G+ G +E + ++ + D P+V YS I CFGK ++E+ +
Sbjct: 498 VVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYD--PDVFTYSILIECFGKSNKVEMACSL 555
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM+S G + + T N + R G E Y +K ++G+ S TY
Sbjct: 556 FDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMK-------QQGLIPDSITY 606
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 140/339 (41%), Gaps = 34/339 (10%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + A Q+ +K + +PD T L+ G + ++E++S
Sbjct: 227 LLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 286
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
VL++ + +++A G+ +++I ++ ++ + YS + +GQL +
Sbjct: 287 CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLN 346
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L ++ SR ++ + + + + G +E + R+ S D++ ++
Sbjct: 347 EVL-DICSR--FMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVL 403
Query: 230 LKERK-------FFMLGE--FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMR 279
K M+ E + DVG+ +N++ S G K S + F +
Sbjct: 404 CNAEKTLEAIDLLHMMPEKGIVTDVGM---------YNMVF-SALGKLKQVSFISNLFDK 453
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
M G PD+ T+NI ++ R+ + E M+ S PD+VTY +++ L
Sbjct: 454 MKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINC-----L 508
Query: 340 GRNLDFGLSKMNLDDSPVVSTDPYVF------EAFGKGD 372
G++ D + M + DP VF E FGK +
Sbjct: 509 GKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSN 547
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 68/177 (38%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+Y+ S GK Q+ + N +M + G D T N I Y R G + + + +
Sbjct: 430 MYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVM 489
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ S D ++ K +++ D +++L+ + + K+
Sbjct: 490 EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKV 549
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ F M G P++ T+NI R + H E MK + + PD +TY
Sbjct: 550 EMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITY 606
>gi|410110107|gb|AFV61133.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
brasiliensis]
Length = 382
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 13 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 72
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 73 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 132
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ I +GK
Sbjct: 133 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGK 192
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 193 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 252
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 253 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 308
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 309 DAGEVKDITVFERMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNAY 361
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 28 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 87
Query: 337 KR 338
+
Sbjct: 88 NK 89
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 113 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 172
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + ++ YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 173 RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 232
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 233 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 292
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 293 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYXNVVEVFDKMRGLGY 347
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD + A+ ++ F
Sbjct: 348 FPDSNVIAVVLNAYGKLQEF 367
>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
Length = 795
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 15/291 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L++ L + + A + + E L+P+ T AL+ + G V + +++ +E+
Sbjct: 196 TALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEE 255
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+V V S ++D Y + G NE + ++ ++ RN +LP VY I + K Q
Sbjct: 256 KHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRN--ILPNVFVYGTLIDGYFKADQR 313
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ + KEM SRG ++ ++F+ R G + E + + + L D+ ++
Sbjct: 314 GIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSM 373
Query: 226 S---FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR--M 280
F KE F + + + + G + +N+L+ G FK+ + E M
Sbjct: 374 MDGFFKAGKESDAFNIAQEMTEKSSG---FDVVAYNVLI---NGLFKLGKYESESFHTGM 427
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ G PD TFN A+ + + L MK + P+ +T +V
Sbjct: 428 RQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILV 478
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 121/292 (41%), Gaps = 39/292 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ R + A +L+ +K+EG PD T LM + G + A+ + E+ +
Sbjct: 23 LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVN 82
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
+V + L+DAY + C + + + D+++ ++ L+P+V Y+ ++ K G++E
Sbjct: 83 LEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKS--LVPDVVTYTCIMNGLCKSGKVEE 140
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
++ +EM G + + I + G++ E GR+ ++ G V +
Sbjct: 141 AKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRM-----VVRGIGFDVVVY 195
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
T L + GL + + N + + F + E P
Sbjct: 196 TALMD-------------GLFKAGMAN-----------------NAEDMFQVLLEESLVP 225
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
+ T++ ++ L L+ M+ + + P+++ Y +VD Y K L
Sbjct: 226 NCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGL 277
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 109/279 (39%), Gaps = 20/279 (7%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALM---LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
A +L+N +KS GL P NS C ++ LC A G + + + ++L F +
Sbjct: 455 ALKLLNEMKSYGLKP-NSITCNILVQRLCAA--GEIEKTMDLLNDMLVMGFHPTPTTHKA 511
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
++DA + + I+ + DQ+ L Y+ IS F + G + K+M+ +G
Sbjct: 512 VLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKG 571
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY------LKER 233
D T NA I Y L + + ++ EG+ TY L
Sbjct: 572 ILADIITYNALIHGYCISSHLKKAFAVHSQML-------TEGVSPNVETYNILLGGLSAA 624
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF-KMKSLQREFMRMSEAGFHPDLTTF 292
+ L + R + N +L+S G MK + + M GF P T+
Sbjct: 625 RLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTY 684
Query: 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
N+ F++ ++ M+ + P+ TY ++
Sbjct: 685 NVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
+EG+ P+ T L+ + + EA + ++ V + L+ +G+IG
Sbjct: 604 TEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMK 663
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
E + + ++ + Y+ ISCF K ++ + ++EM RG +S+T + I
Sbjct: 664 ECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723
Query: 192 IYYSRFGSLTEMETAYGRLKRS 213
+ + E+ + LKRS
Sbjct: 724 CGWYKLSKQPELNKS---LKRS 742
>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g32630-like [Glycine max]
Length = 619
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 112/270 (41%), Gaps = 35/270 (12%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+++ ++ EG++ T L+ YA++ + EA+ V+EE+ + + V V + ++
Sbjct: 238 EILGLMEREGVVASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWN 297
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
R G ++ D++ CR + IS K GQ+E E L+EM +G ++
Sbjct: 298 CRAGNVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNV 357
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
N + Y + G + E A+ R + +++++G A FTY
Sbjct: 358 VIFNTMMDGYCKRGMMDE---AF----RLQDIMERKGFEADVFTY--------------- 395
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
N+L + + +R M E G P++ T + +
Sbjct: 396 -------------NILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGN 442
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ L +++ V P++VTY ++DAY
Sbjct: 443 LAEPERFLRNIEKRGVVPNIVTYNTLIDAY 472
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 35/231 (15%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L + + G++P+ T AL+ G + A+++ EE+ L+V + + +MD
Sbjct: 306 ASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMD 365
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y + G +E + D + + + Y+ S K + E + L MV +G +
Sbjct: 366 GYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAP 425
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
+ T FI Y + G+L E E R R+ I+K G+ TY
Sbjct: 426 NVVTCATFIEIYCQEGNLAEPE----RFLRN---IEKRGVVPNIVTY------------- 465
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
N L+ +Y+ N K+K M E G PD+ T+
Sbjct: 466 ---------------NTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYT 501
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/289 (20%), Positives = 114/289 (39%), Gaps = 43/289 (14%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-- 107
+V+ L R+ + A +L+N + + G++P T L+ N V + + +E+L
Sbjct: 188 VVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLL----NACVVRKDREGVDEILGLM 243
Query: 108 --SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
V S+ + L++ Y E + +++ RN ++ VY+ IS + G +
Sbjct: 244 EREGVVASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAGNV 303
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
EM+ RG ++ T FG+L G+++ + L+++ + V
Sbjct: 304 RRASALFDEMICRGIVPNTXT----------FGALISGVCKAGQMEAAEILLEEMQCKGV 353
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
DL +++N ++ Y M R M GF
Sbjct: 354 -------------------------DLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGF 388
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D+ T+NI A ++ + + L M + V P++VT ++ Y
Sbjct: 389 EADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIY 437
>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Vitis vinifera]
Length = 835
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 15/291 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L++ L + + A + + E L+P+ T AL+ + G V + +++ +E+
Sbjct: 196 TALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEE 255
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+V V S ++D Y + G NE + ++ ++ RN +LP VY I + K Q
Sbjct: 256 KHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRN--ILPNVFVYGTLIDGYFKADQR 313
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ + KEM SRG ++ ++F+ R G + E + + + L D+ ++
Sbjct: 314 GIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSM 373
Query: 226 S---FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR--M 280
F KE F + + + + G + +N+L+ G FK+ + E M
Sbjct: 374 MDGFFKAGKESDAFNIAQEMTEKSSG---FDVVAYNVLI---NGLFKLGKYESESFHTGM 427
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ G PD TFN A+ + + L MK + P+ +T +V
Sbjct: 428 RQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILV 478
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 121/292 (41%), Gaps = 39/292 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ R + A +L+ +K+EG PD T LM + G + A+ + E+ +
Sbjct: 23 LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVN 82
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
+V + L+DAY + C + + + D+++ ++ L+P+V Y+ ++ K G++E
Sbjct: 83 LEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKS--LVPDVVTYTCIMNGLCKSGKVEE 140
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
++ +EM G + + I + G++ E GR+ ++ G V +
Sbjct: 141 AKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRM-----VVRGIGFDVVVY 195
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
T L + GL + + N + + F + E P
Sbjct: 196 TALMD-------------GLFKAGMAN-----------------NAEDMFQVLLEESLVP 225
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
+ T++ ++ L L+ M+ + + P+++ Y +VD Y K L
Sbjct: 226 NCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGL 277
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 109/279 (39%), Gaps = 20/279 (7%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALM---LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
A +L+N +KS GL P NS C ++ LC A G + + + ++L F +
Sbjct: 455 ALKLLNEMKSYGLKP-NSITCNILVQRLCAA--GEIEKTMDLLNDMLVMGFHPTPTTHKA 511
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
++DA + + I+ + DQ+ L Y+ IS F + G + K+M+ +G
Sbjct: 512 VLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKG 571
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY------LKER 233
D T NA I Y L + + ++ EG+ TY L
Sbjct: 572 ILADIITYNALIHGYCISSHLKKAFAVHSQML-------TEGVSPNVETYNILLGGLSAA 624
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF-KMKSLQREFMRMSEAGFHPDLTTF 292
+ L + R + N +L+S G MK + + M GF P T+
Sbjct: 625 RLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTY 684
Query: 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
N+ F++ ++ M+ + P+ TY ++
Sbjct: 685 NVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
+EG+ P+ T L+ + + EA + ++ V + L+ +G+IG
Sbjct: 604 TEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMK 663
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
E + + ++ + Y+ ISCF K ++ + ++EM RG +S+T + I
Sbjct: 664 ECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723
Query: 192 IYYSRFGSLTEMETAYGRLKRS 213
+ + E+ + LKRS
Sbjct: 724 CGWYKLSKQPELNKS---LKRS 742
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 126/289 (43%), Gaps = 11/289 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E ++ H A +L N + GL PD L+ Y V EA V+++EL +
Sbjct: 305 ALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNK 364
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRAISCFGKQGQLE 166
+ V ++ + L+D G + + ++D++ S + D++ Y+ I K+G++
Sbjct: 365 NLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVV--TYNILIDALCKEGRIL 422
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L M+ +G + T NA + Y ++ + + R+ +S D +
Sbjct: 423 EALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLI 482
Query: 227 FTYLKER---KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
Y K + +L + +R L D+ + +N L+ ++ +Q M ++
Sbjct: 483 NGYCKTEMVDEAIVLFKEMRHKNL-IPDIAS--YNSLIDGLCNLGRIPHVQELLDEMCDS 539
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
G PD+ T+NI AF + F D +SL E + PD T +VD
Sbjct: 540 GQSPDVITYNILLDAFCKTQPF-DKAISLFRQIVEGIWPDFYTNHAIVD 587
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 137/326 (42%), Gaps = 44/326 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L ++ + A ++ + G PD T ALM Y + V EA+ ++ ++
Sbjct: 271 LIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRG 330
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
V + L+D Y + +E + + ++ N +L+P + Y+ I G++
Sbjct: 331 LEPDVLNYNVLIDGYCKTKMVDEAMVLFKELC--NKNLVPTIASYNSLIDGLCNSGRISH 388
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
++ L EM D T N I + G + E A G L ++ K+G++
Sbjct: 389 VKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILE---ALGVLV----MMMKKGVKPNIV 441
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
TY M G LR+ KD+ F RM ++G P
Sbjct: 442 TY----NAMMDGYCLRNNVNVAKDI------------------------FNRMVKSGLEP 473
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR--NLDF 345
D+ +N+ + + M + + + M+H+++ PD+ +Y ++D + LGR ++
Sbjct: 474 DILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCN--LGRIPHVQE 531
Query: 346 GLSKM-NLDDSPVVSTDPYVFEAFGK 370
L +M + SP V T + +AF K
Sbjct: 532 LLDEMCDSGQSPDVITYNILLDAFCK 557
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/289 (19%), Positives = 117/289 (40%), Gaps = 4/289 (1%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L+ L + + A L+ ++ + P+ AL+ +GFV +A + ++
Sbjct: 164 GTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGE 223
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+L + L+D +G + E+ ++ ++ N D ++ I K+G++
Sbjct: 224 RGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILE 283
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ L M RG D T NA + Y ++ E + R+ + D +
Sbjct: 284 AQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLID 343
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLL--WNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y K + ++ L K+L + +N L+ + ++ +++ M +
Sbjct: 344 GYCKTKMVDEAMVLFKE--LCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ 401
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD+ T+NI A + + L M + V P++VTY ++D Y
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGY 450
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 45/271 (16%), Positives = 103/271 (38%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+ T+ G P+ T ++ + NG + +A + LL+ ++ L++
Sbjct: 109 AFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLIN 168
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ G + ++ ++ + +YS I K G + ++ RG +
Sbjct: 169 GLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILL 228
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ T N+ I G E+ ++ R D + KE + L
Sbjct: 229 DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVL 288
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ + + +N L+ Y + + F RM + G PD+ +N+ + +
Sbjct: 289 AMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKT 348
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
M + + + + ++++ P + +Y ++D
Sbjct: 349 KMVDEAMVLFKELCNKNLVPTIASYNSLIDG 379
>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
Length = 1450
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/285 (19%), Positives = 127/285 (44%), Gaps = 9/285 (3%)
Query: 60 PHLAHQLVNTVKSEGLLPDN-STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
P AH L++ +++G + +N S ++ Y +A+ V + S ++ +V +
Sbjct: 760 PETAHHLIDLTETDGTVLNNISVYVDVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWN 819
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L++AY GC+ ++ + + + + + G+LE + ++E+
Sbjct: 820 ALIEAYAASGCYERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDI 879
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF--- 235
GF + ++ + ++R G++ E++ Y +K + + R ++ + ++
Sbjct: 880 GFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDV 939
Query: 236 -FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
ML E + + G + DL +WN +L Y + + + R+ E G PD T+NI
Sbjct: 940 EAMLSE-MEEAGF-KPDLS--IWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNI 995
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
V + R + + ++ M+ + P L TY +V ++ ++L
Sbjct: 996 LIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQL 1040
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 100/237 (42%), Gaps = 13/237 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A QL N ++S G PD + + + +A G V + + + EE++ F + ++
Sbjct: 382 AEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIH 441
Query: 123 AYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
YG+ G + + + + S RN D++ Y+ I GK ++E + EM++ G
Sbjct: 442 MYGKQGQNDLALQLYRDMKSSGRNPDVI--TYTVLIDSLGKTNKIEEAAGMMSEMLNTGV 499
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK----ERKFF 236
T +A I Y++ G E E + + RS D+ + +L+ +R
Sbjct: 500 KPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMT 559
Query: 237 MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE-AGFHPDLTTF 292
E + D + L+ L+L + K++ + R M E G +P ++
Sbjct: 560 FYKEMIHDGIMPEHS----LYELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQAISY 612
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/283 (17%), Positives = 114/283 (40%), Gaps = 2/283 (0%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLE--AQVVWEELLSSSFVL 112
R K + +L + ++ G PD + L+ G + A + E+ S
Sbjct: 267 ARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRSGLRP 326
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
+ + L+ A R E +++ D + + + Y+ IS +G+ G E
Sbjct: 327 DIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLF 386
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
++ SRGF D+ + N+F+ ++R G++ +++ + + D+ + Y K+
Sbjct: 387 NDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQ 446
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ + + RD+ ++ + + +L+ S K++ M G P L T+
Sbjct: 447 GQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTY 506
Query: 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ +++ + + + M PD + Y ++D +L
Sbjct: 507 SALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHL 549
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 98/262 (37%), Gaps = 43/262 (16%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIID---QVSC--------------------------- 142
+V+V + +M Y R G FN++ + D + C
Sbjct: 255 TVKVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIE 314
Query: 143 -----RNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
R + L P++ Y+ IS + LE N +MV+ D T NA I Y
Sbjct: 315 LLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYG 374
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE---RKFFMLGEFLRDVGLGRKDL 252
R G + E + L+ D + + + +E K + E + +G G+ +
Sbjct: 375 RCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDE- 433
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+ +N ++ Y + + + M +G +PD+ T+ + + + + + +
Sbjct: 434 --MTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMM 491
Query: 313 EHMKHESVGPDLVTYGCVVDAY 334
M + V P L TY ++ Y
Sbjct: 492 SEMLNTGVKPTLRTYSALICGY 513
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 5/178 (2%)
Query: 26 PKNGDLARKIIRYRKQEGFVDC-ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
PK G + +R E +D SLV G+++ A +L ++S G D S
Sbjct: 1006 PKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHI 1065
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
+M Y N+G +AQ ++ + ++ + LM +YG G E ++ + +
Sbjct: 1066 MMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETD 1125
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
A+L YS I + + G LK++ G D FI R SL++
Sbjct: 1126 ANLSTLPYSSVIDAYVRNGDYNAGIQKLKQVKEEGLEPDHRIWTCFI----RAASLSQ 1179
>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 426
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 139/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
PD ++ L+ Y N LEA ++ E+ +L + + ++D YG++G
Sbjct: 112 PDTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAY 400
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V PD +Y ++ Y++
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVE 126
Query: 337 KR 338
+
Sbjct: 127 NK 128
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 90/227 (39%), Gaps = 5/227 (2%)
Query: 147 LLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
++P V YS I+ K +++ E L++MV G ++ T N I YS G E
Sbjct: 255 IMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESV 314
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ + S + D + K + + + L + + LL Y
Sbjct: 315 RVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGY 374
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
A + + F M G PD FN A++R+ M L E M + V PD+
Sbjct: 375 ATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDI 434
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
+T+ V+ A+ RLGR LD + K N V D V+ +G
Sbjct: 435 ITFSTVISAFC--RLGR-LDDAMEKFNHMIDTGVPPDTAVYSCLIQG 478
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/292 (19%), Positives = 121/292 (41%), Gaps = 39/292 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ ++ + AH L ++ +G++P+ T +L+ + +A+ V +++ +
Sbjct: 229 ALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGA 288
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ + L+ Y G + E + + ++S ++ L+P+V + ++ K G+++
Sbjct: 289 GVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMS--SSLLVPDVGNCNSFMTALCKHGRIK 346
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ MV +G D + A + Y+ G + M+ + +++ EG+
Sbjct: 347 EARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLF-------NVMVCEGV---- 395
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+ +R F N L+ +YA M F M++ G +
Sbjct: 396 ---VPDRHVF---------------------NTLINAYARLGMMDKSLLMFEDMTKQGVN 431
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
PD+ TF+ AF R+ D HM V PD Y C++ ++R
Sbjct: 432 PDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRR 483
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 131/331 (39%), Gaps = 52/331 (15%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ L + K+ A +++ + G+ P+N T L+ Y+ +G E+ V++E+ S
Sbjct: 263 SSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSS 322
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
S V V + M A + G E I D + + P+V Y + + G +
Sbjct: 323 SLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPK--PDVISYGALLHGYATAGCI 380
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG----------------------SLTEM 203
M+N MV G D N I Y+R G + + +
Sbjct: 381 AGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTV 440
Query: 204 ETAYGRLKRS-------RHLIDKEGIRAVSFTYLKERKFFMLGEF-LRDVGLGRKDLGNL 255
+A+ RL R H+ID G+ + Y + G+ RD+ ++ + ++
Sbjct: 441 ISAFCRLGRLDDAMEKFNHMIDT-GVPPDTAVY----SCLIQGQCNRRDLVKAKELISDM 495
Query: 256 LWNLLLLSYAGNFK--MKSLQREFMRMSEA----------GFHPDLTTFNIRAVAFSRMS 303
L + F + +L +E R++E G P+L TFN + +
Sbjct: 496 LSKGIPPPCIKFFTSIINNLCKEG-RVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVG 554
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ L+ M+ V PD+ TY +VD Y
Sbjct: 555 NMKEAVGLLDSMESVGVEPDIYTYNTLVDGY 585
>gi|255661192|gb|ACU25765.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 426
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V S++ G+ K A L+N +++ G++
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVM 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
PD + L+ + N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + A +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAAAGRJEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERLIHLFSKYKKYXNVVEVFDKMRERRYFPDSNVIALVLNAY 400
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 120/289 (41%), Gaps = 4/289 (1%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ ++ R+ A ++ + + G+LPD + +L+ A NG + +A + + E+ S
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS 426
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V + + L+D + R G ++ + + D++ R + Y+ ++ K+
Sbjct: 427 GIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADA 486
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+ EMV RG D T I Y + G++ + + + R+ DK +
Sbjct: 487 DMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDG 546
Query: 229 YLKERKFFMLGEFLRDVGLGRKDL--GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+ K + E D + RKD+ ++ + +L + + + +M E G
Sbjct: 547 FCKAGEMGRAKELWDD--MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIR 604
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
P+L T N + R + L M + PD +Y ++D YL
Sbjct: 605 PNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYL 653
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 118/281 (41%), Gaps = 34/281 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+ + L +KK A L N + G++PD T L+ Y +G + +A ++E ++ +
Sbjct: 472 TFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT 531
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ + L+D + + G + D + D++P+ Y ++ F G L
Sbjct: 532 NLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMI--RKDIIPDHISYGTVLNGFCSSGLLP 589
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
N +M+ +G + T N I Y R G +M AY L + + GI S
Sbjct: 590 EALNLCDQMLEKGIRPNLVTCNTLIKGYCRSG---DMPKAYEYLSK----MISNGIIPDS 642
Query: 227 FTY-------LKE---RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276
F+Y LKE K F+L + GL + +NL+L + KM+ ++
Sbjct: 643 FSYNTLIDGYLKEANLEKAFILINEMEKRGL---QFNIITYNLILNGFCAEGKMQEAEQV 699
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
+M E G +PD T+ S + H+S ++MK
Sbjct: 700 LRKMIEIGINPDGATY----------SSLINGHVSQDNMKE 730
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 115/306 (37%), Gaps = 30/306 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ R+ A QL+N+ S G+ P T A++ G A+ V E+L
Sbjct: 297 TLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQL 356
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ + L+ R E I D++S R +LP++ +S I + G L
Sbjct: 357 GLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRG--VLPDLVSFSSLIGVLARNGHLY 414
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+EM G D+ I + R G+L++ LK ++ + V
Sbjct: 415 QALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDA------LKMRDEMLARGCFMDV- 467
Query: 227 FTY------LKERKFFMLGEFLRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMR 279
TY L ++K F + L + + R + + + L+ Y + M F
Sbjct: 468 VTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEA 527
Query: 280 MSEAGFHPDLTTFNI------RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
M PD T+N +A R WD M + + PD ++YG V++
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWD------DMIRKDIIPDHISYGTVLNG 581
Query: 334 YLDKRL 339
+ L
Sbjct: 582 FCSSGL 587
>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 140/343 (40%), Gaps = 48/343 (13%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
EGL PD T L+ + G + EA + +LLSS F L+V + S L+ + + G +E
Sbjct: 285 EGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDE 344
Query: 133 IISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMV-SRGFSVDSATGNA 189
+ ++ ++ N L P++ YS I KQG+++ KEM +R F N+
Sbjct: 345 ALQLLYEMEANN--LQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFP------NS 396
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
F + G L + G L +R D ++ DV
Sbjct: 397 F----AHSGILKGL-CEKGMLSDARMYFDS----------------LIMSNLRPDVT--- 432
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
L+N+++ Y ++ R + R+ + P + TFN F + +
Sbjct: 433 ------LYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEAR 486
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAF 368
LE +K + P VTY +++AY ++ L L +MNL D P V T V +
Sbjct: 487 RLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGL 546
Query: 369 GKGDFHSSSEAFLEFKRQR-----KWTYRKLIAVYLK-KQLRR 405
K S LE R + + TY +I + K K +R+
Sbjct: 547 CKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRK 589
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 65/142 (45%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ L +++K + QL+ ++++GL PD T ++ C+ + +A + +++L +
Sbjct: 542 VIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHN 601
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+D R G + ++ + RN +L Y+ I +G +
Sbjct: 602 LEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAV 661
Query: 170 NTLKEMVSRGFSVDSATGNAFI 191
+MV +GF V +A I
Sbjct: 662 KVFHQMVEKGFEVSIKDYSAVI 683
>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 426
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 139/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
PD ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PDTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDEMRGLGYFPDSNVIALVLNAY 400
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + M+ V PD +Y ++ Y++
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYVE 126
Query: 337 KR 338
+
Sbjct: 127 NK 128
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|168061839|ref|XP_001782893.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665615|gb|EDQ52293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 713
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 121/278 (43%), Gaps = 26/278 (9%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL D+ T +M G + + W + V + S L++A+GR ++++
Sbjct: 125 GLQQDSVTFNIIMNALNRVGRIRDVDRYWALMRMGRIVPDLTTCSILINAFGRARDWHKV 184
Query: 134 ISIIDQVSCRN--ADLLPEVYSRAISCFGKQG---QLELMENTLKEMVSR-------GFS 181
++ ++ ADL+ +Y+ IS +GK G ++EL+ +L+ ++R +
Sbjct: 185 DLVLAEMETYGIKADLM--IYNSLISVYGKAGLFYEVELVVKSLRAEIARREDLGNSSLA 242
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
D T N + Y + G L ++ +G +K+S D ++ Y K + GE
Sbjct: 243 FDLVTYNTLLDVYGKAGRLDDVIYWFGEMKKSGVQPDVLTFDSLVNAYGKASHYD--GEV 300
Query: 242 LRDVGLGRK-----DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
L L RK DL + +N LL + + M AGF P T+N
Sbjct: 301 LE---LFRKYNYKSDL--VFYNTLLFMFGKGGHYADAWKILEDMKAAGFMPTSETYNSLI 355
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AF R S + + +LE MK V P ++ +++AY
Sbjct: 356 LAFGRGSQWQEAENTLERMKANGVKPVAQSFSFLLEAY 393
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 110/254 (43%), Gaps = 22/254 (8%)
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157
A+ V+EE + S S LM Y + G I I+ ++ R A + P+V + +
Sbjct: 42 AEAVFEEFVKSGMSPSHDDYVILMSGYTKCGSLQRGIGILQKM--REAGIHPQVSAYNVI 99
Query: 158 CFG----KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
G +G + M + ++ G DS T N + +R G + +++ + ++
Sbjct: 100 LEGCTRSTRGDINGMMEAHRILMDMGLQQDSVTFNIIMNALNRVGRIRDVDRYWALMRMG 159
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV---GLGRKDLGNLLWNLLLLSY--AGNF 268
R + D + + + R + + L ++ G+ + DL +++N L+ Y AG F
Sbjct: 160 RIVPDLTTCSILINAFGRARDWHKVDLVLAEMETYGI-KADL--MIYNSLISVYGKAGLF 216
Query: 269 -----KMKSLQREFMRMSEAGFHP---DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
+KSL+ E R + G DL T+N + + D+ MK V
Sbjct: 217 YEVELVVKSLRAEIARREDLGNSSLAFDLVTYNTLLDVYGKAGRLDDVIYWFGEMKKSGV 276
Query: 321 GPDLVTYGCVVDAY 334
PD++T+ +V+AY
Sbjct: 277 QPDVLTFDSLVNAY 290
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 126/289 (43%), Gaps = 11/289 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E ++ H A +L N + GL PD L+ Y V EA V+++EL +
Sbjct: 305 ALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNK 364
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRAISCFGKQGQLE 166
+ V ++ + L+D G + + ++D++ S + D++ Y+ I K+G++
Sbjct: 365 NLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVV--TYNILIDALCKEGRIL 422
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L M+ +G + T NA + Y ++ + + R+ +S D +
Sbjct: 423 EALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLI 482
Query: 227 FTYLKER---KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
Y K + +L + +R L D+ + +N L+ ++ +Q M ++
Sbjct: 483 NGYCKTEMVDEAIVLFKEMRHKNL-IPDIAS--YNSLIDGLCNLGRIPHVQELLDEMCDS 539
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
G PD+ T+NI AF + F D +SL E + PD T +VD
Sbjct: 540 GQSPDVITYNILLDAFCKTQPF-DKAISLFRQIVEGIWPDFYTNHAIVD 587
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 137/326 (42%), Gaps = 44/326 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L ++ + A ++ + G PD T ALM Y + V EA+ ++ ++
Sbjct: 271 LIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRG 330
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
V + L+D Y + +E + + ++ N +L+P + Y+ I G++
Sbjct: 331 LEPDVLNYNVLIDGYCKTKMVDEAMVLFKELC--NKNLVPTIASYNSLIDGLCNSGRISH 388
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
++ L EM D T N I + G + E A G L ++ K+G++
Sbjct: 389 VKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILE---ALGVLV----MMMKKGVKPNIV 441
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
TY M G LR+ KD+ F RM ++G P
Sbjct: 442 TY----NAMMDGYCLRNNVNVAKDI------------------------FNRMVKSGLEP 473
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR--NLDF 345
D+ +N+ + + M + + + M+H+++ PD+ +Y ++D + LGR ++
Sbjct: 474 DILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCN--LGRIPHVQE 531
Query: 346 GLSKM-NLDDSPVVSTDPYVFEAFGK 370
L +M + SP V T + +AF K
Sbjct: 532 LLDEMCDSGQSPDVITYNILLDAFCK 557
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/289 (19%), Positives = 117/289 (40%), Gaps = 4/289 (1%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L+ L + + A L+ ++ + P+ AL+ +GFV +A + ++
Sbjct: 164 GTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGE 223
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+L + L+D +G + E+ ++ ++ N D ++ I K+G++
Sbjct: 224 RGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILE 283
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ L M RG D T NA + Y ++ E + R+ + D +
Sbjct: 284 AQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLID 343
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLL--WNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y K + ++ L K+L + +N L+ + ++ +++ M +
Sbjct: 344 GYCKTKMVDEAMVLFKE--LCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ 401
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD+ T+NI A + + L M + V P++VTY ++D Y
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGY 450
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/271 (16%), Positives = 103/271 (38%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+ T+ G P+ T ++ + NG + +A + LL+ ++ L++
Sbjct: 109 AFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLIN 168
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ G + ++ ++ + +YS I K G + ++ RG +
Sbjct: 169 GLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILL 228
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ T N+ I G E+ ++ R D + KE + L
Sbjct: 229 DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVL 288
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ + + +N L+ Y + + F RM + G PD+ +N+ + +
Sbjct: 289 AMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKT 348
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
M + + + + ++++ P + +Y ++D
Sbjct: 349 KMVDEAMVLFKELCNKNLVPTIASYNSLIDG 379
>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 805
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/364 (18%), Positives = 141/364 (38%), Gaps = 15/364 (4%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+K + +++ + G P+ T L+ G V E + S L
Sbjct: 404 LGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKVELC 463
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
+ L+ AYGR G + D+++ Y+ ++ +QG + +
Sbjct: 464 RDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVS 523
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
+M S GF + + + + +++ G+ +E + + +R + K R
Sbjct: 524 KMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTLVIANFKCR 583
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+ + ++V ++ N +L YA N F + + G PDL T+N
Sbjct: 584 RLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYN 643
Query: 294 IRAVAFSRMSMFWDLHLSLEHMK---------HESVGPDLVTYGCVVDAYLDKRLGRNLD 344
+++ + W+ L ++ + + PD+V+Y V++ + + L +
Sbjct: 644 SLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEAQ 703
Query: 345 FGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRK-----WTYRKLIAVY 398
LS+M D +P V T + + + + + + + QRK TYR+++ Y
Sbjct: 704 RVLSEMIADGVAPCVITYHTLVGGYASREMFAEAREVVGYMIQRKLKPMELTYRRVVDSY 763
Query: 399 LKKQ 402
+ +
Sbjct: 764 CRAK 767
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 115/305 (37%), Gaps = 51/305 (16%)
Query: 40 KQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K G C +L++ G+ A +++ ++ G PD T L YA GF
Sbjct: 281 KARGHAPCVVTYNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFY 340
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
EA + ++ + + + +M AYG G +E +++ D++ Y+
Sbjct: 341 QEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLV 400
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
+ GK+ + M L EM G + + T N + + G ME+ R+
Sbjct: 401 LGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRG----MESYVTRV----- 451
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY------AGNFK 269
EG+++ E RD +N L+ +Y A FK
Sbjct: 452 ---LEGMKSCKV------------ELCRDT-----------YNTLICAYGRCGSRANAFK 485
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
M + M+ AGF P LTT+N SR + + MK E P+ ++Y
Sbjct: 486 M------YDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSL 539
Query: 330 VVDAY 334
++ +
Sbjct: 540 LLQCH 544
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 102/283 (36%), Gaps = 42/283 (14%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ L R+ + A +L + ++ EG+ P T ++ Y G V LL+
Sbjct: 188 TVLHALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVA---LLAD 244
Query: 109 SFVLSVQ----VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
V+ S ++ A GR G +E ++ + + R Y+ + FGK G
Sbjct: 245 MRAAGVEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGN 304
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
L+EM G D+ T N Y+R G E K +I K G+
Sbjct: 305 YTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAA------KCIDTMIGK-GLLP 357
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+FTY N ++ +Y K+ F RM + G
Sbjct: 358 NTFTY----------------------------NTIMTAYGNAGKVDEALALFDRMKKNG 389
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
F P T+N+ + S F + L M P+ VT+
Sbjct: 390 FIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTW 432
>gi|255553861|ref|XP_002517971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542953|gb|EEF44489.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1029
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 109/270 (40%), Gaps = 23/270 (8%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD +++ YA+ G + EA++V+ L V + +M Y +G +E I +
Sbjct: 725 PDIIASNSMISLYADLGMISEAELVFNNLREKGSADGVSYAT-MMYLYKGMGMLDEAIDV 783
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+++ Y++ ++C+ GQL L EM+ + D T +
Sbjct: 784 AEEMKLSGLLRDSVSYNKVMTCYATNGQLLECGELLHEMIKKKLFPDGGTFKILFTVLKK 843
Query: 197 FGSLTE----METAY--GRLKRSRHLIDKE----GIRAVSFTYLKERKFFMLGEFLRDVG 246
G TE +E++Y G+ + +I G+ A++ ++ K F + D+
Sbjct: 844 GGLPTEAVMQLESSYHEGKPYARQAVITSVFSLVGLHALA---MESCKIFTKADIALDL- 899
Query: 247 LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW 306
+N+ + +Y + ++ FM+M + G PDL T + + M
Sbjct: 900 --------FAYNVAIFAYGSSGEIDKALNTFMKMQDEGLEPDLVTSICLVYCYGKAGMVE 951
Query: 307 DLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
+ +K+ + P + VVDAY D
Sbjct: 952 GVKRIYSQLKYRDIKPSDSAFKAVVDAYED 981
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 71/182 (39%), Gaps = 33/182 (18%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL----------------- 105
A + +K GLL D+ + +M CYA NG +LE + E+
Sbjct: 780 AIDVAEEMKLSGLLRDSVSYNKVMTCYATNGQLLECGELLHEMIKKKLFPDGGTFKILFT 839
Query: 106 ------LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID-----QVSCR---NADLLPEV 151
L + V+ ++ Y R + S++ SC+ AD+ ++
Sbjct: 840 VLKKGGLPTEAVMQLESSYHEGKPYARQAVITSVFSLVGLHALAMESCKIFTKADIALDL 899
Query: 152 --YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
Y+ AI +G G+++ NT +M G D T + Y + G + ++ Y +
Sbjct: 900 FAYNVAIFAYGSSGEIDKALNTFMKMQDEGLEPDLVTSICLVYCYGKAGMVEGVKRIYSQ 959
Query: 210 LK 211
LK
Sbjct: 960 LK 961
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L+D YG+ G + I + + ++ I G G L E L +M RG
Sbjct: 348 LIDLYGKAGRLGDAADIFSDMMKSGVAMDTITFNTMIYTCGSHGHLSEAETLLNKMEDRG 407
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
S D+ T N F+ Y+ G++ Y +++ L D RA+
Sbjct: 408 VSPDTRTYNIFLSLYADEGNIDAAIKCYKKIREVGLLPDTVSHRAI 453
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 15/167 (8%)
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG--------IRAVSFTYL 230
G + + T A I Y+ G E E + R R L+ ++ I+A L
Sbjct: 511 GGGLSAKTNAAIIDAYAENGLWAEAEAVF---YRKRDLVGQKTDILEYNVMIKAYGKGKL 567
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
E K F L +R G + +N L+ ++G M + M GF P
Sbjct: 568 YE-KAFTLFRSMRHHGTWPDEC---TYNSLIQMFSGADLMDQARDLLTEMQGVGFKPQCA 623
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
TF+ ++R+ D + M V P+ V YG +++ Y ++
Sbjct: 624 TFSSIIACYARLGQLSDAAGVYQEMVKVGVKPNEVVYGAIINGYAEE 670
>gi|356495758|ref|XP_003516740.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 554
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/295 (16%), Positives = 115/295 (38%), Gaps = 41/295 (13%)
Query: 67 VNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126
+N +K +G ++ ++ Y +NG +A V EE+ L + + ++D +G+
Sbjct: 209 INVMKQKGFPLNSFVYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGK 268
Query: 127 IGCFNEIISIIDQVS------------------CRNADLL-----------------PEV 151
G +E + + ++ C+ D + P++
Sbjct: 269 YGELDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKSFHLFTDMQEQGLYPDPKI 328
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
+ ISC G+QG+ +++ + M RG A + Y ++G LK
Sbjct: 329 FVTIISCMGEQGKWGIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNARECVQALK 388
Query: 212 RSRHLIDKEGIRAVSFTYLKE---RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
L+ ++ Y ++ + M+ + + G+ + ++ N+L+ ++
Sbjct: 389 SEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIMEAEGI---EPNIVMLNMLINAFGNAG 445
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+ + + E+G PD+ T+ AF R F ++ + + M+++ PD
Sbjct: 446 RYMEAMSVYHHIKESGVSPDVVTYTTLMKAFIRAKKFDEVPIIYKEMENDRCTPD 500
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 116/316 (36%), Gaps = 45/316 (14%)
Query: 27 KNGDLAR--KIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K GDL R ++ + +GF A L+E LG + A L + +G P +
Sbjct: 93 KEGDLDRAMSLLSQMEAKGFHLSSTAYACLIEALGNVGRTSEADMLFKEMICDGYKPKLN 152
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
+L+ + G + A V +E+ S S + +D Y G + S I+ +
Sbjct: 153 FYTSLLRGFLKKGLLGLANGVLKEMDYSGIWRSKETYQIFLDYYVGAGRLEDTWSTINVM 212
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ L VYS+ + + G + L+E+ RG S+D+ N+ I + ++G L
Sbjct: 213 KQKGFPLNSFVYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGEL 272
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
E + +++ KEG+R T WN L
Sbjct: 273 DEALKLFKKMQ-------KEGVRPNIVT----------------------------WNSL 297
Query: 261 LLSYA--GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
+ + G+F MKS F M E G +PD F + + E MK
Sbjct: 298 IKWHCKEGDF-MKSFHL-FTDMQEQGLYPDPKIFVTIISCMGEQGKWGIIKKYFESMKIR 355
Query: 319 SVGPDLVTYGCVVDAY 334
Y +VD Y
Sbjct: 356 GNKEYGAVYAVLVDIY 371
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 36 IRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
IR K+ G V A LV+ G+ K A + V +KSEG+L S C L YA G
Sbjct: 354 IRGNKEYGAV-YAVLVDIYGQYGKFQNARECVQALKSEGVLVSPSIFCVLANAYAQQGLC 412
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YS 153
+ +V + + + ++ +L+ L++A+G G + E +S+ + + + + P+V Y+
Sbjct: 413 EQVIMVLQIMEAEGIEPNIVMLNMLINAFGNAGRYMEAMSVYHHI--KESGVSPDVVTYT 470
Query: 154 RAISCFGKQGQLELMENTLKEM 175
+ F + + + + KEM
Sbjct: 471 TLMKAFIRAKKFDEVPIIYKEM 492
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 65/323 (20%), Positives = 120/323 (37%), Gaps = 35/323 (10%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
SL+ +K LA+ ++ + G+ T + Y G + + +
Sbjct: 155 TSLLRGFLKKGLLGLANGVLKEMDYSGIWRSKETYQIFLDYYVGAGRLEDTWSTINVMKQ 214
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
F L+ V S ++ Y G + + I +++++ R L + + I FGK G+L+
Sbjct: 215 KGFPLNSFVYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGELDE 274
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGS-------LTEMETA--YGRLKRSRHLID 218
K+M G + T N+ I ++ + G T+M+ Y K +I
Sbjct: 275 ALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKSFHLFTDMQEQGLYPDPKIFVTIIS 334
Query: 219 ------KEGIRAVSFTYLKERK--------------FFMLGEF--LRDVGLGRKDLGNLL 256
K GI F +K R + G+F R+ K G L+
Sbjct: 335 CMGEQGKWGIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNARECVQALKSEGVLV 394
Query: 257 WNLLLLSYAGNFKMKSLQREFMR----MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+ A + + L + + M G P++ N+ AF + +
Sbjct: 395 SPSIFCVLANAYAQQGLCEQVIMVLQIMEAEGIEPNIVMLNMLINAFGNAGRYMEAMSVY 454
Query: 313 EHMKHESVGPDLVTYGCVVDAYL 335
H+K V PD+VTY ++ A++
Sbjct: 455 HHIKESGVSPDVVTYTTLMKAFI 477
>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 884
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 123/312 (39%), Gaps = 8/312 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
AH+ + GL+P +ST +++L + G + EA+ + +++ ++ + L+D
Sbjct: 507 AHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLD 566
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y ++G S+ ++ R +S I K G +E EM +GF
Sbjct: 567 GYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVP 626
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK----FFML 238
++ N+ I G L E +++ L D + + KE + F
Sbjct: 627 NNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAF 686
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
E + +G+ + +N L+ Y M S +M +G+ PD+TT+NIR
Sbjct: 687 AE-MHHIGVTPD---TVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQG 742
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVV 358
F L+ + V P+ VTY +++A L R + + + P V
Sbjct: 743 FCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAVCTDMLDRAMVLTAKLLKMAFVPNV 802
Query: 359 STDPYVFEAFGK 370
T + F K
Sbjct: 803 VTTNVLLSHFCK 814
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 99/272 (36%), Gaps = 35/272 (12%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A Q + + +G+ P +++ Y+ GF A ++ +L V S S ++
Sbjct: 472 AMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLL 531
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ G E ++ ++ + + ++ + + K G + EM +RG
Sbjct: 532 GLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICP 591
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ +AFI S+ G + E A+ + K+G +F Y
Sbjct: 592 DAIAFSAFIDGLSKAGLVEEAYEAFSEM-------SKKGFVPNNFVY------------- 631
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ G + G L L L+RE M + G PD+ T NI F +
Sbjct: 632 NSLIHGLCNCGKLHEAL------------KLERE---MRQKGLLPDIFTTNIIINGFCKE 676
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ M H V PD VTY ++ Y
Sbjct: 677 GRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGY 708
>gi|449457967|ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
chloroplastic-like [Cucumis sativus]
Length = 894
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V + +L D++ Y R G +++ + ++ E+Y+ I+C + ++ +
Sbjct: 615 IVPDIYLLRDMLRIYQRCGMVHKLADLYYRILKSGVSWDQEMYNCVINCCSRALPVDELS 674
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM+ GF+ ++ T N + Y + T+ +G L + R L+D + Y
Sbjct: 675 RLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLFG-LAQKRGLVDAISYNTMISVY 733
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K + F + ++ + + +N +L +Y +M++ + RM E D
Sbjct: 734 GKNKDFKNMSSTVQKMKFNGFSVSLEAYNCMLDAYGKECQMENFRSVLQRMQETSSECDH 793
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
T+NI + ++ L +K + PDL +Y ++ AY
Sbjct: 794 YTYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAY 838
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 54/293 (18%), Positives = 112/293 (38%), Gaps = 42/293 (14%)
Query: 40 KQEGFVDCASLVEDLGR-KKKPHLAHQLVNT---VKSEGLLPDNSTLCALMLCYANNGFV 95
+Q+ V L+ D+ R ++ + H+L + + G+ D ++ C + V
Sbjct: 611 EQQDIVPDIYLLRDMLRIYQRCGMVHKLADLYYRILKSGVSWDQEMYNCVINCCSRALPV 670
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN-ADLLPEVYSR 154
E +++E+L F + L+ ++D YG+ F + ++ R D + Y+
Sbjct: 671 DELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGLVDAIS--YNT 728
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
IS +GK + M +T+++M GFSV N + Y + + + R++ +
Sbjct: 729 MISVYGKNKDFKNMSSTVQKMKFNGFSVSLEAYNCMLDAYGKECQMENFRSVLQRMQETS 788
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
D +TY N+++ Y + +
Sbjct: 789 SECDH-------YTY----------------------------NIMINIYGEQGWIDEVA 813
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ G PDL ++N A+ M + ++ M+ + + PD +TY
Sbjct: 814 EVLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPDRITY 866
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 120/289 (41%), Gaps = 4/289 (1%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ ++ R+ A ++ + + G+LPD + +L+ A NG + +A + + E+ S
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS 426
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V + + L+D + R G ++ + + D++ R + Y+ ++ K+
Sbjct: 427 GIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADA 486
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+ EMV RG D T I Y + G++ + + + R+ DK +
Sbjct: 487 DMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDG 546
Query: 229 YLKERKFFMLGEFLRDVGLGRKDL--GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+ K + E D + RKD+ ++ + +L + + + +M E G
Sbjct: 547 FCKAGEMGRAKELWDD--MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIR 604
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
P+L T N + R + L M + PD +Y ++D YL
Sbjct: 605 PNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYL 653
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 118/281 (41%), Gaps = 34/281 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+ + L +KK A L N + G++PD T L+ Y +G + +A ++E ++ +
Sbjct: 472 TFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT 531
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ + L+D + + G + D + D++P+ Y ++ F G L
Sbjct: 532 NLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMI--RKDIIPDHISYGTVLNGFCSSGLLP 589
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
N +M+ +G + T N I Y R G +M AY L + + GI S
Sbjct: 590 EALNLCDQMLEKGIRPNLVTCNTLIKGYCRSG---DMPKAYEYLSK----MISNGIIPDS 642
Query: 227 FTY-------LKE---RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276
F+Y LKE K F+L + GL + +NL+L + KM+ ++
Sbjct: 643 FSYNTLIDGYLKEANLEKAFILINEMEKRGL---QFNIITYNLILNGFCAEGKMQEAEQV 699
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
+M E G +PD T+ S + H+S ++MK
Sbjct: 700 LRKMIEIGINPDGATY----------SSLINGHVSQDNMKE 730
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 115/306 (37%), Gaps = 30/306 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ R+ A QL+N+ S G+ P T A++ G A+ V E+L
Sbjct: 297 TLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQL 356
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ + L+ R E I D++S R +LP++ +S I + G L
Sbjct: 357 GLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRG--VLPDLVSFSSLIGVLARNGHLY 414
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+EM G D+ I + R G+L++ LK ++ + V
Sbjct: 415 QALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDA------LKMRDEMLARGCFMDV- 467
Query: 227 FTY------LKERKFFMLGEFLRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMR 279
TY L ++K F + L + + R + + + L+ Y + M F
Sbjct: 468 VTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEA 527
Query: 280 MSEAGFHPDLTTFNI------RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
M PD T+N +A R WD M + + PD ++YG V++
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWD------DMIRKDIIPDHISYGTVLNG 581
Query: 334 YLDKRL 339
+ L
Sbjct: 582 FCSSGL 587
>gi|224130012|ref|XP_002320730.1| predicted protein [Populus trichocarpa]
gi|222861503|gb|EEE99045.1| predicted protein [Populus trichocarpa]
Length = 407
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 3/204 (1%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y++ I +G QLE E T M RGF D T A I YS+ G+LT E + LK
Sbjct: 171 YTKIIHFYGMNNQLEEAERTRLAMEERGFVSDQVTLTAMIHMYSKGGNLTLAEETFEELK 230
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+D+ ++ Y++ LR++ G+ ++ LL +Y+
Sbjct: 231 LLGQPLDRRSYGSMIMAYIRAGMPEKGEMILREMDAQEIRAGSEVYKALLRAYSIIGDAD 290
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
QR F + AG PD T + A+ + + + E+M + P V+
Sbjct: 291 GAQRVFDAIQLAGIPPDDRTCAVLLNAYGMAGQSQNAYATFENMWRAGIEPTDRCVALVL 350
Query: 332 DAY-LDKRLGRNLDF--GLSKMNL 352
AY + +L + LDF GL + L
Sbjct: 351 AAYEKENKLNQALDFLIGLEREKL 374
>gi|326495232|dbj|BAJ85712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 127/323 (39%), Gaps = 47/323 (14%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR +P LA L ++ +G P AL+ Y NG + EA + +++ ++
Sbjct: 183 LGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGAYCRNGLLDEALKLLQDMKANPLCQP 242
Query: 114 -VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMEN 170
V S L+ A+ F+ + ++ +++ R+ + P ++ I S + + G+L+ ME
Sbjct: 243 DVYTYSILIKAFVDAPRFDLVDAMYKEMAERS--VAPNTVTQNIVLSGYCRAGRLDDMEK 300
Query: 171 TLKEMVSRGFS-VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L M+ S D T N + + G + ME Y + + + + Y
Sbjct: 301 LLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNILIGAY 360
Query: 230 LKER---KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K+R K + E++R + +N ++ ++A K+++ F +M G
Sbjct: 361 GKKRMYDKMSAVMEYMRRLAF---PWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMK 417
Query: 287 PDLTTFNIRAVAFSRMSMF-----------------------------------WDLHLS 311
PD TF FS ++F ++
Sbjct: 418 PDTKTFCCLINGFSNAALFHKVVGMVKLAERLDVPPNTSFHNSVLAACAKAEDLMEMERV 477
Query: 312 LEHMKHESVGPDLVTYGCVVDAY 334
HMKH PD +TY +++AY
Sbjct: 478 FRHMKHMQCEPDAITYSILLEAY 500
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/276 (19%), Positives = 115/276 (41%), Gaps = 37/276 (13%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P T L+L +G AQ ++ E+ + ++ + L+ AY R G +E + +
Sbjct: 171 PKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGAYCRNGLLDEALKL 230
Query: 137 IDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ + N P+VY+ +I F + +L++ KEM R + ++ T N + Y
Sbjct: 231 LQDMKA-NPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGY 289
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
R G L +ME +L L + D+
Sbjct: 290 CRAGRLDDMEK-------------------------------LLSAMLESAN-SKPDVWT 317
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ N++L + + +++ +++ + + G P+ TFNI A+ + M+ + +E+
Sbjct: 318 M--NIILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNILIGAYGKKRMYDKMSAVMEY 375
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
M+ + TY V++A+ + +N++ ++M
Sbjct: 376 MRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTFNQM 411
>gi|255661180|gb|ACU25759.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 426
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 139/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G++
Sbjct: 52 ELSRKLCDYSKAISIFSRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVM 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIYLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAY 400
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R+ L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RDRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLK+S + D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 90/227 (39%), Gaps = 5/227 (2%)
Query: 147 LLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
++P V YS I+ K +++ E L++MV G ++ T N I YS G E
Sbjct: 184 IMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESV 243
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ + S + D + K + + + L + + LL Y
Sbjct: 244 RVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGY 303
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
A + + F M G PD FN A++R+ M L E M + V PD+
Sbjct: 304 ATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDI 363
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
+T+ V+ A+ RLGR LD + K N V D V+ +G
Sbjct: 364 ITFSTVISAFC--RLGR-LDDAMEKFNHMIDTGVPPDTAVYSCLIQG 407
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/292 (19%), Positives = 121/292 (41%), Gaps = 39/292 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ ++ + AH L ++ +G++P+ T +L+ + +A+ V +++ +
Sbjct: 158 ALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGA 217
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ + L+ Y G + E + + ++S ++ L+P+V + ++ K G+++
Sbjct: 218 GVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMS--SSLLVPDVGNCNSFMTALCKHGRIK 275
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ MV +G D + A + Y+ G + M+ + +++ EG+
Sbjct: 276 EARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLF-------NVMVCEGV---- 324
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+ +R F N L+ +YA M F M++ G +
Sbjct: 325 ---VPDRHVF---------------------NTLINAYARLGMMDKSLLMFEDMTKQGVN 360
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
PD+ TF+ AF R+ D HM V PD Y C++ ++R
Sbjct: 361 PDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRR 412
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 131/331 (39%), Gaps = 52/331 (15%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ L + K+ A +++ + G+ P+N T L+ Y+ +G E+ V++E+ S
Sbjct: 192 SSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSS 251
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
S V V + M A + G E I D + + P+V Y + + G +
Sbjct: 252 SLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPK--PDVISYGALLHGYATAGCI 309
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG----------------------SLTEM 203
M+N MV G D N I Y+R G + + +
Sbjct: 310 AGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTV 369
Query: 204 ETAYGRLKRS-------RHLIDKEGIRAVSFTYLKERKFFMLGEF-LRDVGLGRKDLGNL 255
+A+ RL R H+ID G+ + Y + G+ RD+ ++ + ++
Sbjct: 370 ISAFCRLGRLDDAMEKFNHMIDT-GVPPDTAVY----SCLIQGQCNRRDLVKAKELISDM 424
Query: 256 LWNLLLLSYAGNFK--MKSLQREFMRMSEA----------GFHPDLTTFNIRAVAFSRMS 303
L + F + +L +E R++E G P+L TFN + +
Sbjct: 425 LSKGIPPPCIKFFTSIINNLCKEG-RVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVG 483
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ L+ M+ V PD+ TY +VD Y
Sbjct: 484 NMKEAVGLLDSMESVGVEPDIYTYNTLVDGY 514
>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
urticoides]
Length = 423
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K GF V +++ G+ K A L++ +K+ G++
Sbjct: 42 ELSRKLCDYSKAISIFSRLKSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 101
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 102 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 161
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ I +GK
Sbjct: 162 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGK 221
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 222 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 281
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 282 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 337
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 338 DAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAY 390
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 142 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 201
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + ++ YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 202 RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 261
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 262 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 321
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 322 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVVEVFDKMRGLGY 376
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD + A+ ++ F
Sbjct: 377 FPDSNVIAVVLNAYGKLQEF 396
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 57 FSRLKSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 116
Query: 337 KR 338
+
Sbjct: 117 NK 118
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 126/307 (41%), Gaps = 24/307 (7%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
K+ ++R C L+ L + K LA + GL P T ++ C A G
Sbjct: 206 KMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREG 265
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV-- 151
+ A+ ++EE+ + + + L+D YG++G +S+ +++ ++A P+V
Sbjct: 266 DLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEM--KDAGCEPDVIT 323
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ I+CF K ++ L M RG + T + I + + G L E + +
Sbjct: 324 YNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMI 383
Query: 212 RSRHLIDKEGIRAVSFTYLK----------ERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
R G++ FTY + F L ++ G+ +L + + LL
Sbjct: 384 RV-------GLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGV---NLNIVTYTALL 433
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
+ +M+ + F + +AG+ + + + + M LE M +++
Sbjct: 434 DGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLK 493
Query: 322 PDLVTYG 328
PDL+ YG
Sbjct: 494 PDLLLYG 500
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 14/225 (6%)
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF V N + G L E + ++ + R L + K K +
Sbjct: 180 GFGVFDTLFNVLV----DLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLA 235
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
F +D+ + +N+++ A +++ + F M G PD+ T+N
Sbjct: 236 LSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDG 295
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD-KRLGRNLDF--GLSKMNLDDS 355
+ ++ M E MK PD++TY +++ + +R+ + ++ G+ + L
Sbjct: 296 YGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGL--Q 353
Query: 356 PVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR----QRKWTYRKLI 395
P V T + +AF K G +++ F++ R ++TY LI
Sbjct: 354 PNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLI 398
>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
Length = 838
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 123/302 (40%), Gaps = 10/302 (3%)
Query: 27 KNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM 86
K ++ ++ R R Q L+ G+ K ++A ++ + ++S+ P+ T AL+
Sbjct: 186 KAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALV 245
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG---CFNEIISIIDQVSCR 143
+A G +A+ ++E+L + V + LM+AY R G EI S++ + C
Sbjct: 246 NAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCE 305
Query: 144 NADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
P+ Y+ + +G+ G E + + M G + + + YSR G +
Sbjct: 306 -----PDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVA 360
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
+ E ++ +S D + ++ Y + +F + E L + G +N+L+
Sbjct: 361 KCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILI 420
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
Y ++ F + PD+ T+ R A+SR + E M
Sbjct: 421 NIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCY 480
Query: 322 PD 323
PD
Sbjct: 481 PD 482
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 91/230 (39%)
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
L SSF V + L+DAYG+ + + S ++ + Y+ + + G
Sbjct: 89 LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGL 148
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
LE E EM GF + NA+I + G + + R+KR R
Sbjct: 149 LEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTM 208
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+ Y K K +M + ++ + + L+ ++A + + F ++ EAG
Sbjct: 209 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAG 268
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD+ +N A+SR + M+H PD +Y +VDAY
Sbjct: 269 LEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 318
>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
[Acantholippia seriphioides]
Length = 416
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K G++
Sbjct: 54 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVM 113
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 114 PNTASYSTLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKL 173
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ I +GK
Sbjct: 174 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGK 233
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 234 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 293
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 294 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 349
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 350 DAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSDVIALVLNAY 402
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 69 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVE 128
Query: 337 KR 338
+
Sbjct: 129 NK 130
>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
Length = 593
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 122/324 (37%), Gaps = 63/324 (19%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ G+ K+P + ++ N +K+ G P+ T AL+ +A G +A+ V+EE+ +
Sbjct: 276 MINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAG 335
Query: 110 FVLSVQVLSDLMDAYGRIGC---FNEIISIIDQVSCR----NADLLPEVYSRA------- 155
V + LM+AY R G +EI S+++ + C + ++L + Y RA
Sbjct: 336 HEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAE 395
Query: 156 ---------------------ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+S K G + E + ++ G D+ NA + Y
Sbjct: 396 AAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAY 455
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
R G L +ME G ++R G + TY
Sbjct: 456 GRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTY------------------------- 490
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
N+L+ Y + ++ F ++ G D+ T+ R A++R + E
Sbjct: 491 ---NVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCLEIFEE 547
Query: 315 MKHESVGPDLVTYGCVVDAYLDKR 338
M PD T ++ A D+R
Sbjct: 548 MVDAGCYPDAGTAKVLLAACSDER 571
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/285 (16%), Positives = 107/285 (37%), Gaps = 35/285 (12%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ G+K++ + A + + +P T L+ Y N+G + A+ V E+ +
Sbjct: 171 LIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQKNG 230
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ V + +D + C + + + ++ E Y+ I+ +GK Q
Sbjct: 231 LPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSL 290
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM + G + T A + ++R G + E + ++++ H D + Y
Sbjct: 291 KVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD-------VYAY 343
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
N L+ +Y+ + F M G PD
Sbjct: 344 ----------------------------NALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 375
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++NI A+ R + + + + +K + + P + ++ ++ A+
Sbjct: 376 ASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAH 420
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 11/168 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P A ++ + ++ G PD ++ L+ Y G EA+ ++EL
Sbjct: 345 ALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQ 404
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLE 166
+++ L+ A+ + G ++ Q+ + L P+ ++ ++ +G+ G+L+
Sbjct: 405 GMRPTMKSHMLLLSAHAKSGNVARCEEVMAQL--HKSGLRPDTFALNAMLNAYGRAGRLD 462
Query: 167 LMENTLKEM-------VSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
ME L M G + D++T N + Y R G L ME A+
Sbjct: 463 DMERLLGAMERGGDDDAGGGAAPDTSTYNVLVNVYGRAGYLDRMEAAF 510
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 122/308 (39%), Gaps = 45/308 (14%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV-------------QV 116
+K+ GL PDN L+ + NG + EA V +E+L VL V ++
Sbjct: 420 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKM 479
Query: 117 LSD----------------------LMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--Y 152
LS+ L++ Y + G N+ +++ + + RN L P+V Y
Sbjct: 480 LSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN--LKPDVVTY 537
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ I F K ++E + +M+SR + + I Y G ++E + +
Sbjct: 538 NTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVE 597
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
+ Y + EFL ++ L + +N L+ G K ++
Sbjct: 598 KGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLI---NGFIKEEN 654
Query: 273 LQREFM---RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ R F +M +G PD+ T+N+ FSR + L + M V PD TY
Sbjct: 655 MDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTS 714
Query: 330 VVDAYLDK 337
+++ ++ +
Sbjct: 715 LINGHVTQ 722
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/326 (19%), Positives = 123/326 (37%), Gaps = 1/326 (0%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C SL+ L + LA ++ V G+ + TL ++ N + + ++
Sbjct: 222 CNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDME 281
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
V + L++AY R G E ++D +S + Y+ I+ K G+
Sbjct: 282 EKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYL 341
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ L EM+ G S D+AT N ++ R ++ + E + + + D A+
Sbjct: 342 RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI 401
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K ++ RD+ N+++ +L+ + N M + M E G
Sbjct: 402 GLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCV 461
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL-DKRLGRNLDF 345
D+ T+N + M + M V PD T+ +++ Y D + + +
Sbjct: 462 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 521
Query: 346 GLSKMNLDDSPVVSTDPYVFEAFGKG 371
+ + P V T + + F KG
Sbjct: 522 FEMMIQRNLKPDVVTYNTLIDGFCKG 547
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/312 (18%), Positives = 130/312 (41%), Gaps = 7/312 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + + S+G++PD + AL+ + NG + +A + ++ ++ + + L+
Sbjct: 378 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG 437
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ R G +E + + D++ + L Y+ ++ K+ L + EM RG
Sbjct: 438 GFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFP 497
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T I YS+ G++ + T + + + D + + K + + E
Sbjct: 498 DFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELW 557
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
D+ R ++ + +L+ Y + R + M E GF + T N + R
Sbjct: 558 NDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRA 617
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN-LDDS---PVV 358
L +M + + PD +TY +++ ++ + N+D + +N +++S P V
Sbjct: 618 GNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE---ENMDRAFALVNKMENSGLLPDV 674
Query: 359 STDPYVFEAFGK 370
T + F +
Sbjct: 675 ITYNVILNGFSR 686
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 118/300 (39%), Gaps = 5/300 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS--DLMDAYGRIGCFN 131
G +PD + L+ N G +A + + V S V++ ++D + + G N
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVN 238
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ + ++ R YS + K ++ E L++MV++G D+ T N I
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLI 298
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
YS G E + ++R L D + + + K K + + + ++
Sbjct: 299 YGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQN 358
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ ++L YA + + F M G P + TFN+ A++ M +
Sbjct: 359 PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMII 418
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
M+ V P +VTY V+ A R+G+ +D + K N V D Y + +G
Sbjct: 419 FNEMRDHGVKPHVVTYMTVIAALC--RIGK-MDDAMEKFNQMIDQGVVPDKYAYHCLIQG 475
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 152/368 (41%), Gaps = 60/368 (16%)
Query: 27 KNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM 86
K DL +++++ V +S+V L + + A + + ++G+LPDN T L+
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLI 298
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
Y++ G EA V++E+ S + V L+ LM + + G E + D ++ + +
Sbjct: 299 YGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQN 358
Query: 147 LLPEVYSRAI--SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL---- 200
P+V+S I + + +G L M + M+ G + T N I Y+ G L
Sbjct: 359 --PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAM 416
Query: 201 ---TEME---------------TAYGRLKRSRHLIDK------EGIRAVSFTY------- 229
EM A R+ + ++K +G+ + Y
Sbjct: 417 IIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGF 476
Query: 230 ------LKERKFFMLGEFLRDVGLGRKDL---GNLLWNLLLLSYAGNFKMKSLQREFMRM 280
LK ++ ++ E + + G+ R D+ G+++ NL L ++ Q F
Sbjct: 477 CTHGSLLKAKE--LISEIMNN-GM-RLDIVFFGSIINNLCKLG-----RVMDAQNIFDLT 527
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
G HPD +N+ + + + M + P++V YG +V+ Y ++G
Sbjct: 528 VNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYC--KIG 585
Query: 341 RNLDFGLS 348
R +D GLS
Sbjct: 586 R-IDEGLS 592
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 108/267 (40%), Gaps = 41/267 (15%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
+G+ P T L+ YAN G + +A +++ E+ V ++ A RIG ++
Sbjct: 390 DGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDD 449
Query: 133 IISIIDQVSCRNADLLPEVYSR--AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
+ +Q+ + ++P+ Y+ I F G L + + E+++ G +D
Sbjct: 450 AMEKFNQMI--DQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLD------- 500
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
I++ FGS+ GR+ ++++ D +VGL
Sbjct: 501 IVF---FGSIINNLCKLGRVMDAQNIFD----------------------LTVNVGLHPD 535
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+++N+L+ Y KM+ R F M AG P++ + + ++ D L
Sbjct: 536 ---AVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRI-DEGL 591
Query: 311 SL-EHMKHESVGPDLVTYGCVVDAYLD 336
SL M + + P + Y ++D +
Sbjct: 592 SLFREMLQKGIKPSTILYNIIIDGLFE 618
>gi|410110127|gb|AFV61143.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
origanoides]
Length = 408
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 58 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 117
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 118 PNTTSYSTLLXMYVENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKL 177
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 178 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 237
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 238 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 297
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 298 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAV 353
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 354 DAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAY 406
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 73 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLXMYVE 132
Query: 337 KR 338
+
Sbjct: 133 NK 134
>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 504
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 93/196 (47%), Gaps = 10/196 (5%)
Query: 24 THPKNGDLAR--KIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLP 77
H + G+ R +I + GF+ +L+E R + P A ++ + G+ P
Sbjct: 241 AHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRP 300
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
D + L+ + G +AQ V++ + + F +++ L+ +Y + G E ++
Sbjct: 301 DQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLV 360
Query: 138 DQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
++ N+ + P+ +++ +S +G G+++ ME+ L+ MVS D +T N I Y+
Sbjct: 361 REI--ENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYA 418
Query: 196 RFGSLTEMETAYGRLK 211
+ G + + E + L+
Sbjct: 419 QGGYIEKAEEVFNSLE 434
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 123/308 (39%), Gaps = 18/308 (5%)
Query: 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102
G + +E LG+ + A ++ +G+LP +T ++ Y + +A ++
Sbjct: 161 GIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLF 220
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIG-------CFNEIISI--IDQVSCRNADLLPEVYS 153
+ + ++ + LM+A+ R G F E+ S+ I V NA L E YS
Sbjct: 221 RSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNA--LLEAYS 278
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
R G + + MV G D + N I + R G + + Y +K +
Sbjct: 279 RGEHPTGAK-------EVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEA 331
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
+ + +Y K K +R++ ++N LL +Y + ++ +
Sbjct: 332 GFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEM 391
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ M + PD++T N A+++ ++ + + PD++++ ++ A
Sbjct: 392 ESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGA 451
Query: 334 YLDKRLGR 341
Y ++L R
Sbjct: 452 YAQRKLFR 459
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ + K A +LV +++ G+ PD +L+ Y N+G + E + + E ++SS
Sbjct: 343 LLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSV 402
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ L+ L++AY + G + + + + + L P+V S S G Q +L
Sbjct: 403 AKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKG--LTPDVMSWT-SLMGAYAQRKLFR 459
Query: 170 NTL---KEMVSRGFSVDSATGNAFI 191
+ ++MV G D AT F+
Sbjct: 460 KCVSIFQKMVKAGCIPDRATAKVFL 484
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ G + L+ ++ S PD STL L+ YA G++ +A+ V+ L S
Sbjct: 377 SLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESK 436
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV-----------------SCRNADLLPEV 151
V + LM AY + F + +SI ++ SCR+ + + EV
Sbjct: 437 GLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFLSSCRSPEQVKEV 496
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 132/299 (44%), Gaps = 31/299 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ L + ++ A+ L+ + G +PD T L+ + + +A V+E+L++
Sbjct: 59 SLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR 118
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
F V S L+D + G E I + ++ ++ +P Y+ IS F + G+++
Sbjct: 119 GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI-KSGSCMPNTVTYNSLISGFCRMGKMD 177
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI--RA 224
N L+ M G S D T + + F L ++ AY L + + ++G+
Sbjct: 178 EAMNLLERMAETGSSPDVVT---YTTLMNGFCKLARLDDAYDLLNQ----MTRKGLTPNV 230
Query: 225 VSFTYL-----KERKF----FMLGEFLRDVGLGRKDLGNLL--WNLLLLSYAGNFKMKSL 273
V+FT L +E + +LGE + RK + +N +L Y +++
Sbjct: 231 VTFTSLMDGLCRENRLSDAVHILGE------MRRKSCSPTVYTYNTILDGYCRVNQLEE- 283
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
R+FM + E P++ +FNI +++ + +E + PD+V Y V+D
Sbjct: 284 ARKFM-LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVID 341
>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial [Vitis vinifera]
Length = 817
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 136/320 (42%), Gaps = 26/320 (8%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V+ L + K A +L+N +K + D L+ Y G +++A+ ++EE+
Sbjct: 408 VVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERG 467
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS--CF-GKQGQLE 166
+ + L+ + R G E + ++D + + ++R I C GK + E
Sbjct: 468 IEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAE 527
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
NTL++ +S A + Y + + + RL + L+ K+
Sbjct: 528 AFLNTLEDKCLENYS-------AMVDGYCKANFTRKAYELFSRLSKQGILVKKKS----C 576
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLG------NLLWNLLLLSYAGNFKMKSLQREFMRM 280
F L M GE+ + + L + L +++ L+ ++ + MK Q F +
Sbjct: 577 FKLLS--SLCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDML 634
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY--LDKR 338
E G PD+ T+ + + R++ + MK + PD++TY V+D + ++ +
Sbjct: 635 VERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKVNLK 694
Query: 339 LGRNLDF--GLSKMNLDDSP 356
+ R+L F G + +D SP
Sbjct: 695 MARSLQFSKGSEEEKMDASP 714
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 62/136 (45%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L N + S G+ + + +++ C G E ++E S L + + ++D
Sbjct: 351 AVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVD 410
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A ++G E + +++++ R L Y+ I+ + QG+L +N +EM RG
Sbjct: 411 ALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEP 470
Query: 183 DSATGNAFIIYYSRFG 198
D T N + +SR G
Sbjct: 471 DIVTYNILVGGFSRNG 486
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 60/140 (42%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
+EG+ PD AL+ Y G +L+A + +++S+ + ++S ++ +G +
Sbjct: 325 NEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMAS 384
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
E++ + L +Y+ + K G++E L EM R S+D I
Sbjct: 385 EVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLI 444
Query: 192 IYYSRFGSLTEMETAYGRLK 211
Y G L + + + +K
Sbjct: 445 AGYCLQGKLVDAKNMFEEMK 464
>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 426
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 140/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVVVFDKMRGLGYFPDSNVIALVLNAY 400
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|410110131|gb|AFV61145.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rehmannii]
Length = 379
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L+ +K+ G++
Sbjct: 13 ELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVM 72
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ S+ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 73 PNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 132
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 133 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 192
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 193 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 252
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 253 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 308
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 309 DAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAY 361
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 113 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 172
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 173 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 232
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 233 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 292
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 293 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYANVVEVFDKMRGLGY 347
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD + A+ ++ F
Sbjct: 348 FPDSNVIAVVLNAYGKLQXF 367
>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 112/288 (38%), Gaps = 6/288 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ L + K A + + +EGL PD+ T L+ Y G V A+ + + +
Sbjct: 292 LIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNG 351
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
FV L+D G N +++ ++ + +Y+ I QG +
Sbjct: 352 FVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAA 411
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM +G + T N + + G +++ + + + D + Y
Sbjct: 412 QLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGY 471
Query: 230 ---LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
LK + + + D G+ D +N LL K + + + M E G
Sbjct: 472 STQLKMENALEILDVMMDNGV---DPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCA 528
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
P+L TFNI + R LE MK++SV PD VT+G ++D +
Sbjct: 529 PNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGF 576
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 124/323 (38%), Gaps = 53/323 (16%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
R +PH A +L+N + S+G + C ++ + F E ++ ++L+S L +
Sbjct: 158 RTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLS 217
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLK 173
+ L+ + G E ++D+V R +LP + Y+ I ++G+L+ +
Sbjct: 218 TFNKLLHVLCKKGDVKECEKLLDKVIKRG--VLPNLFTYNFFIQGLCQKGELDAAVRMVG 275
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY---- 229
++ +G D T N I + E E G+L EG+ SFTY
Sbjct: 276 RLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVN-------EGLEPDSFTYNTLI 328
Query: 230 ----------LKERKF-------FMLGEFL---------------RDVGLGRKDLGN--- 254
L ER F+ EF R + L + LG
Sbjct: 329 AGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIK 388
Query: 255 ---LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+L+N L+ + + + MSE G P++ TFNI +M D
Sbjct: 389 PNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGL 448
Query: 312 LEHMKHESVGPDLVTYGCVVDAY 334
++ M + PD+ T+ ++ Y
Sbjct: 449 VKVMISKGYFPDIFTFNILIHGY 471
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + + + A L N +G+ P+ L+ +N G +LEA + E+
Sbjct: 361 SLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEK 420
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ VQ + L++ ++GC ++ ++ + + P++++ I G QL+ M
Sbjct: 421 GLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG--YFPDIFTFNILIHGYSTQLK-M 477
Query: 169 ENTLK---EMVSRGFSVDSATGNAFI 191
EN L+ M+ G D T N+ +
Sbjct: 478 ENALEILDVMMDNGVDPDVYTYNSLL 503
>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 132/347 (38%), Gaps = 53/347 (15%)
Query: 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
+C +++ LGR+ K LA ++ + G+ P AL+ YA G + EA ++E +
Sbjct: 32 NCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAM 91
Query: 106 LSSSFVLSVQVLSDLMDAYGR--------IGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157
+V + L++A + +G F E+ Q + D+ A
Sbjct: 92 KEKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEM----KQAGVQPNDITYNCMVNACV 147
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
C + LKEM + + I Y + SL GRL + L
Sbjct: 148 CLS---LFDTASQILKEMKAVNCLPN------VISYTTMINSLGRS----GRLDEAVEL- 193
Query: 218 DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277
F +KE LGR + +N LL +YA + + F
Sbjct: 194 ---------FEEMKE--------------LGRSP-NSWTYNSLLKAYAREGRYEKAMCLF 229
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD- 336
+ M + G PDL T+N R +F + M+ + PD VTY ++DAY
Sbjct: 230 VGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKW 289
Query: 337 KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEF 383
R GR D + +P + T + +A GK S+SEA F
Sbjct: 290 SRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAG--SASEAMQIF 334
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 30 DLARKIIRYRKQEGFVDC-------ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
D A +I++ K V+C +++ LGR + A +L +K G P++ T
Sbjct: 153 DTASQILKEMKA---VNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTY 209
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
+L+ YA G +A ++ + + + + ++D GR G F E + ++
Sbjct: 210 NSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQR 269
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ Y+ + + K + + LK M G + D T N + + GS +E
Sbjct: 270 KGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASE 329
Query: 203 METAYGRLKRSRH 215
+ LK + H
Sbjct: 330 AMQIFHELKAAGH 342
>gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana]
Length = 495
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/329 (21%), Positives = 130/329 (39%), Gaps = 26/329 (7%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R+ + Y+ G L+ LG+ K+P AH+L + +EG + ++ AL+ Y
Sbjct: 138 ELLREQLWYKPNVGIY--VKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAY 195
Query: 90 ANNGFVLEAQVVWEELLSS---------------SF--VLSVQVLSDLMDAYGRIGCFNE 132
+ +G A + E + SS SF V + + DL+ R G
Sbjct: 196 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPN 255
Query: 133 IISIIDQVSC-----RNADLLPEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
I+ ++ S D P+ ++ + FG GQ+E+MEN ++ S G +
Sbjct: 256 TITFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIR 315
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T N + Y + G+ +M +++ + V + + + R +
Sbjct: 316 TFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLM 375
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
R + L+ +Y K + + + DL FN A+ RM F
Sbjct: 376 QSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKF 435
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ LE M+ + PD +TY +V AY
Sbjct: 436 AEMKGVLELMEKKGFKPDKITYRTMVKAY 464
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 102/261 (39%), Gaps = 37/261 (14%)
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
+ L+ + + PD+ T+ + + + NG + + +E+ SS +++ + L
Sbjct: 261 EMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNIL 320
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+D+YG+ G + ++ ++++ + + Y+ I FG+ G L+ ME + M S
Sbjct: 321 LDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERI 380
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
T L + AYGR ++ DK +G
Sbjct: 381 FPSCVT-------------LCSLVRAYGRASKA----DK------------------IGG 405
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
LR + L + +N L+ +Y K ++ M + GF PD T+ A+
Sbjct: 406 VLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYR 465
Query: 301 RMSMFWDLHLSLEHMKHESVG 321
M H+ H ESVG
Sbjct: 466 ISGM--TTHVKELHGVVESVG 484
>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ K+ H L +K +G LPD T L+ + G V EA ++EEL S +
Sbjct: 463 LGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPD 522
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
+ L++ G+ G +E ++ C L P+V YS I CFGK ++E+
Sbjct: 523 TCSYNSLINCLGKNGHLDEAHMKFKEM-CEKG-LNPDVVTYSTLIECFGKTDKVEMACRL 580
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM++ G + T N + R G E Y +LK ++G+ S TY
Sbjct: 581 FDEMLAEGCYPNIVTYNILLDCLERSGRTAEAVDLYAKLK-------QQGLIPDSITY 631
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 122/308 (39%), Gaps = 45/308 (14%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV-------------QV 116
+K+ GL PDN L+ + NG + EA V +E+L VL V ++
Sbjct: 263 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKM 322
Query: 117 LSD----------------------LMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--Y 152
LS+ L++ Y + G N+ +++ + + RN L P+V Y
Sbjct: 323 LSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN--LKPDVVTY 380
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ I F K ++E + +M+SR + + I Y G ++E + +
Sbjct: 381 NTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVE 440
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
+ Y + EFL ++ L + +N L+ G K ++
Sbjct: 441 KGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLI---NGFIKEEN 497
Query: 273 LQREFM---RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ R F +M +G PD+ T+N+ FSR + L + M V PD TY
Sbjct: 498 MDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTS 557
Query: 330 VVDAYLDK 337
+++ ++ +
Sbjct: 558 LINGHVTQ 565
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/326 (19%), Positives = 123/326 (37%), Gaps = 1/326 (0%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C SL+ L + LA ++ V G+ + TL ++ N + + ++
Sbjct: 65 CNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDME 124
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
V + L++AY R G E ++D +S + Y+ I+ K G+
Sbjct: 125 EKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYL 184
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ L EM+ G S D+AT N ++ R ++ + E + + + D A+
Sbjct: 185 RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI 244
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K ++ RD+ N+++ +L+ + N M + M E G
Sbjct: 245 GLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCV 304
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL-DKRLGRNLDF 345
D+ T+N + M + M V PD T+ +++ Y D + + +
Sbjct: 305 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 364
Query: 346 GLSKMNLDDSPVVSTDPYVFEAFGKG 371
+ + P V T + + F KG
Sbjct: 365 FEMMIQRNLKPDVVTYNTLIDGFCKG 390
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/342 (19%), Positives = 140/342 (40%), Gaps = 12/342 (3%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + + S+G++PD + AL+ + NG + +A + ++ ++ + + L+
Sbjct: 221 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG 280
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ R G +E + + D++ + L Y+ ++ K+ L + EM RG
Sbjct: 281 GFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFP 340
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T I YS+ G++ + T + + + D + + K + + E
Sbjct: 341 DFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELW 400
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
D+ R ++ + +L+ Y + R + M E GF + T N + R
Sbjct: 401 NDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRA 460
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN-LDDS---PVV 358
L +M + + PD +TY +++ ++ + N+D + +N +++S P V
Sbjct: 461 GNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE---ENMDRAFALVNKMENSGLLPDV 517
Query: 359 STDPYVFEAFGKGDFHSSSEAFLEFKRQR-----KWTYRKLI 395
T + F + +E + +R + TY LI
Sbjct: 518 ITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLI 559
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 105/246 (42%), Gaps = 16/246 (6%)
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+ YS + GK+ +E + LKEM + G + T I R G + E AY
Sbjct: 226 QTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINE---AYEI 282
Query: 210 LKRSRHLIDKEGI--RAVSFTYLKE-----RKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
LKR +D EG V++T L + RK E + GR + + LL
Sbjct: 283 LKR----MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLD 338
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
++ N + S+ + + M + G PD+ TF I A + F + L+ M+ + + P
Sbjct: 339 RFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILP 398
Query: 323 DLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAF 380
+L TY ++ L RL L+ + +L P T + +GK GD S+ E F
Sbjct: 399 NLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 458
Query: 381 LEFKRQ 386
+ K +
Sbjct: 459 EKMKTK 464
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 136/324 (41%), Gaps = 27/324 (8%)
Query: 32 ARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A +I++ EG V L++ L +K A ++ +K+ PD T L+
Sbjct: 279 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLD 338
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+++N + W E+ V V + L+DA + G F E + +D + R+ +
Sbjct: 339 RFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVM--RDQGI 396
Query: 148 LPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG-SLTEME 204
LP + Y+ I + +L+ M S G + T FI YY + G S++ +E
Sbjct: 397 LPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE 456
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLK---ERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
T + ++K + A ++ K +R+ + L+D+GL ++ +N+++
Sbjct: 457 T-FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD---SVTYNMMM 512
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF---SRMSMFWDLHLSLEHMKHE 318
Y+ ++ + M E PD+ N R+ W + + ++ MK
Sbjct: 513 KCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK-- 570
Query: 319 SVGPDLVTYGCVVDAYLDKRLGRN 342
+ P +VTY ++ LG+N
Sbjct: 571 -LKPTVVTYNTLLAG-----LGKN 588
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 25 HPKNGDLARKIIRYRKQE------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD 78
+ K+GD + + K + V C + + L + + A Q+ +K GL+PD
Sbjct: 445 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 504
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
+ T +M CY+ G + EA + E++ + V V++ L++ + +E +
Sbjct: 505 SVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFM 564
Query: 139 QVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
++ + L P V Y+ ++ GK G+++ + MV +G ++ T N
Sbjct: 565 RM--KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 616
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 21/203 (10%)
Query: 143 RNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+N +P+V Y+ + +GK G+++ + KEM + ++ T N I + G++
Sbjct: 814 KNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNV 873
Query: 201 TEMETAYGRLKRSRH----------LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
+ Y L R LID G+ Y ++ F E + D G R
Sbjct: 874 DDALDLYYDLMSDRDFSPTACTYGPLID--GLSKSGRLYEAKQLF----EGMSDYGC-RP 926
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+ ++N+L+ + + + F RM + G PDL T+++ + +
Sbjct: 927 NCA--IYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 984
Query: 311 SLEHMKHESVGPDLVTYGCVVDA 333
+K + PD+V Y +++
Sbjct: 985 YFRELKESGLNPDVVCYNLIING 1007
>gi|358346363|ref|XP_003637238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503173|gb|AES84376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 9/190 (4%)
Query: 5 SLSLHGSFKFK--RFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVE-DLGRKKKPH 61
+LS+ K K RF+V ++ L + ++R K + C+ ++E L K
Sbjct: 274 ALSIVQEMKEKNIRFDVVAYNA------LIKGLLRLGKYDPRYVCSRMIELGLAPDCKTE 327
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
A ++N +KS G++P+ T L+ G V +A+ +E+L FV + L+
Sbjct: 328 DALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLV 387
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
AY R ++I+ I +++ +L VY+ I+ F + G + L EMV RG S
Sbjct: 388 KAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGIS 447
Query: 182 VDSATGNAFI 191
D T NA I
Sbjct: 448 ADLVTYNALI 457
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 127/314 (40%), Gaps = 26/314 (8%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
V C ++++ L + K A ++ T+ L P+ T AL+ Y G + A++V +
Sbjct: 80 IVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQ 139
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
++ +V S +++ Y + G ++ + ++ ++ RN VY+ I + K G
Sbjct: 140 KMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAG 199
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET----AYGR-----LKRSR 214
+ ++ ++ KEM SR + + + R G + E + Y + +
Sbjct: 200 EQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYA 259
Query: 215 HLID---KEGIRAVSFTYLKERK-----------FFMLGEFLRDVGLGRKDLGNLLWNLL 260
LID KEG + + + ++E K ++ LR LG+ D + ++
Sbjct: 260 SLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLR---LGKYDPRYVCSRMI 316
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L A + K + M G P+ T+NI + +L+ M
Sbjct: 317 ELGLAPDCKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEF 376
Query: 321 GPDLVTYGCVVDAY 334
P +T+ +V AY
Sbjct: 377 VPTPITHKFLVKAY 390
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 131/299 (43%), Gaps = 6/299 (2%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
V C+S++ R K A L + GL P++ + ++ +G V+EA + +
Sbjct: 11 VTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQ 70
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
++ + + +MD ++G E + + + N YS + + K G+
Sbjct: 71 MVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGK 130
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+EL E L++M + T ++ I Y++ G L++ R R+++ + A
Sbjct: 131 MELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVL-REMVQRNVMPNTIVYA 189
Query: 225 VSFT-YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
+ Y K + + +F +++ R + N+++++LL + +M + + M
Sbjct: 190 ILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSK 249
Query: 284 GFHPDLTTF-NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
G PD+ + ++ F + L + ++ MK +++ D+V Y ++ L RLG+
Sbjct: 250 GIDPDIVNYASLIDGYFKEGNQLAALSI-VQEMKEKNIRFDVVAYNALIKGLL--RLGK 305
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 132/300 (44%), Gaps = 31/300 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ L + ++ A+ L+ + G +PD T L+ + + +A V+E+L++
Sbjct: 120 SLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR 179
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
F V S L+D + G E I + ++ ++ +P Y+ IS F + G+++
Sbjct: 180 GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI-KSGSCMPNTVTYNSLISGFCRMGKMD 238
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR--A 224
N L+ M G S D T + + F L ++ AY L + + ++G+
Sbjct: 239 EAMNLLERMAETGSSPDVVT---YTTLMNGFCKLARLDDAYDLLNQ----MTRKGLTPDV 291
Query: 225 VSFTYL-----KERKF----FMLGEFLRDVGLGRKDLGNLLW--NLLLLSYAGNFKMKSL 273
V+FT L +E + +LGE + RK ++ N +L Y +++
Sbjct: 292 VTFTSLMDGLCRENRLSDAVHILGE------MRRKSCSPTVYTYNTILDGYCRANQLEE- 344
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
R+FM + E P++ +FNI +++ + +E + PD+V Y V+D
Sbjct: 345 ARKFM-LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDG 403
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 125/326 (38%), Gaps = 72/326 (22%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVV 101
FV SL++ L + K+ A + + S+G PD T A++ LC N + EA+
Sbjct: 11 FVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR--LHEARKF 68
Query: 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS-----------------CRN 144
EE+ + + +V + L+D + G +E ++++ ++ C+
Sbjct: 69 LEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKA 128
Query: 145 A------DLLPEV-----------YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
DLL E+ Y+ I+ F K + + +++V+RGF D T
Sbjct: 129 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 188
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL 247
+ I + G L E +GR+ +S +
Sbjct: 189 SCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPN---------------------------- 220
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
+ +N L+ + KM RM+E G PD+ T+ F +++ D
Sbjct: 221 ------TVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD 274
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDA 333
+ L M + + PD+VT+ ++D
Sbjct: 275 AYDLLNQMTRKGLTPDVVTFTSLMDG 300
>gi|224124604|ref|XP_002319373.1| predicted protein [Populus trichocarpa]
gi|222857749|gb|EEE95296.1| predicted protein [Populus trichocarpa]
Length = 810
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 123/300 (41%), Gaps = 34/300 (11%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD +++ YA+ G + EA++V++ L + V + +M Y +G +E I I
Sbjct: 515 PDIIASNSMISLYADLGMISEAELVFKNLRENGQADGVS-FATMMYLYKSMGMLDEAIDI 573
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+++ + + LL + Y++ ++C+ GQL L EM+ + D T
Sbjct: 574 AEEM--KQSGLLRDCVSYNKVMACYATNGQLRECAELLHEMIGQKLLPDGGTFKILFTVL 631
Query: 195 SRFG----SLTEMETAY------GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
+ G + ++E+AY R + G+ A++ L+ + F E D
Sbjct: 632 KKGGFPSEGIAQLESAYLEGKPYARQAVITSIFSVVGLHALA---LESCESFTKAEVALD 688
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ +N+ + +Y + ++ + FM+ + G PDL T + + M
Sbjct: 689 ---------SFAYNVAIYAYGSSGEIDKALKTFMKRQDEGLEPDLVTSINLVHCYGKAGM 739
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDAY-------LDKRLGRNLDFGLSKMNLDDSPV 357
+ +K+ + P+ VVDAY L + + +++ FG DS +
Sbjct: 740 VEGVKRIYSQLKYGEIKPNDSLVKAVVDAYKNANRHDLAELVNQDIRFGFDSQQYSDSEI 799
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 96/236 (40%), Gaps = 9/236 (3%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L++ ++ G P T A+M CYA G + +A V++E++ + + V L++
Sbjct: 396 ARDLLDEMQEAGFKPQCLTFSAVMACYARLGQLSDAVDVYQEMVKAGVKPNEVVYGSLIN 455
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ +G E + + V + I + K G + ++ K+M
Sbjct: 456 GFAEVGNVEEALKYFRMMEESGIPANQIVLTSLIKVYSKLGCFDGAKHLYKKMKDLEGGP 515
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D N+ I Y+ G ++E E + L+ + +G+ + YL + ML E +
Sbjct: 516 DIIASNSMISLYADLGMISEAELVFKNLRENGQ---ADGVSFATMMYLY-KSMGMLDEAI 571
Query: 243 RDVGLGRKDLGNL----LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
D+ K G L +N ++ YA N +++ M PD TF I
Sbjct: 572 -DIAEEMKQSGLLRDCVSYNKVMACYATNGQLRECAELLHEMIGQKLLPDGGTFKI 626
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 100/270 (37%), Gaps = 39/270 (14%)
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
+L++L GR+ +I D+ + L Y+ I +GK G+L+ EM
Sbjct: 103 LLTELFKTGGRV----KIGGSSDEETLVRKPCLTSTYNTLIDLYGKAGRLKDAAEVFSEM 158
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
+ G ++D+ T N I G L+E E+ L+DK ++ER
Sbjct: 159 LKSGVAMDTITFNTMIFTCGSHGLLSEAES----------LLDK----------MEER-- 196
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
R +N+ L YA + + + ++ G PD+ +
Sbjct: 197 -------------RISPDTRTYNIFLSLYADAGNINAALECYWKIRNVGLVPDIVSHRTI 243
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS 355
+M ++ +E MK S D+ + ++ Y+++ L + L K D
Sbjct: 244 LHILCGRNMVREVEAVIEEMKKSSQKIDVHSVPGIIKMYINEGLHDRANNLLDKCQFDVG 303
Query: 356 PVVSTDPYVFEAFGKGDFHSSSEAFLEFKR 385
+ +A+ + + +EA KR
Sbjct: 304 FSSKVRAAIIDAYAERGLWAEAEAVFYGKR 333
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ +N L+ ++G M + M EAGF P TF+ ++R+ D +
Sbjct: 378 VTYNSLIQMFSGGDLMDQARDLLDEMQEAGFKPQCLTFSAVMACYARLGQLSDAVDVYQE 437
Query: 315 MKHESVGPDLVTYGCVVDAYLD 336
M V P+ V YG +++ + +
Sbjct: 438 MVKAGVKPNEVVYGSLINGFAE 459
>gi|356528278|ref|XP_003532731.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
[Glycine max]
Length = 1079
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/332 (20%), Positives = 117/332 (35%), Gaps = 38/332 (11%)
Query: 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102
G V + V L K A +V E L D + G + A ++
Sbjct: 751 GAVGISIAVNSLTNGGKHQEAENIVQRSLEENLELDTVAYNTFIKAMLEAGKLHFASSIF 810
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162
E ++SS S++ + ++ YG+ + + + +Q S + L + Y I +GK
Sbjct: 811 EHMISSGVAPSIETFNTMISVYGQDQKLDRAVEMFNQASSCSVPLDEKTYMNLIGYYGKA 870
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G + +M G + N I Y+ G L E E + ++R +L D
Sbjct: 871 GLMLEASQLFSKMQEGGIKPGKVSYNIMINVYANAGVLHETEKLFHTMQRQGYLPD---- 926
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
SFTYL L+ +Y + + M
Sbjct: 927 ---SFTYLS----------------------------LVQAYTRSLNYSKAEETIHAMQS 955
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD---KRL 339
G P FNI AF + + + E + + PDLV + +++ YL
Sbjct: 956 KGIPPSCVHFNILLHAFIKAGLIHEAKRVYEDLSTFGLVPDLVCHRTMLNGYLKCGYVEE 1015
Query: 340 GRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
G N + + D ++S + +++ GKG
Sbjct: 1016 GINFFESICESTKSDRFIMSAAVHFYKSAGKG 1047
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 61/331 (18%), Positives = 131/331 (39%), Gaps = 44/331 (13%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+ L+ +L ++ + A L + + G D +T+ +L+ Y + +A+ ++ E ++
Sbjct: 652 SQLIINLSKEGEISKAELLNHQLTKLGCRMDEATVASLISHYGKQQMLKQAEDIFAEYIN 711
Query: 108 SSFVLSVQVL-SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
S S +VL + +++AY + G + + Q + DL S A++ G+ +
Sbjct: 712 SP--TSSKVLYNSMINAYAKCGKQEKAYLLYKQATGEGRDLGAVGISIAVNSLTNGGKHQ 769
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL----------------------TEME 204
EN ++ + +D+ N FI G L M
Sbjct: 770 EAENIVQRSLEENLELDTVAYNTFIKAMLEAGKLHFASSIFEHMISSGVAPSIETFNTMI 829
Query: 205 TAYG---RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL-------------G 248
+ YG +L R+ + ++ +V L E+ + L + GL G
Sbjct: 830 SVYGQDQKLDRAVEMFNQASSCSVP---LDEKTYMNLIGYYGKAGLMLEASQLFSKMQEG 886
Query: 249 RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
G + +N+++ YA + ++ F M G+ PD T+ A++R +
Sbjct: 887 GIKPGKVSYNIMINVYANAGVLHETEKLFHTMQRQGYLPDSFTYLSLVQAYTRSLNYSKA 946
Query: 309 HLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
++ M+ + + P V + ++ A++ L
Sbjct: 947 EETIHAMQSKGIPPSCVHFNILLHAFIKAGL 977
>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
Length = 773
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 18/265 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SLV+ + +L+ ++ EG PD + +L+ YA+ G V A V++++
Sbjct: 228 SLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRG 287
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V+ S L+ YG GCF ++ S+ + + Y+ I FG+ G +
Sbjct: 288 GCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQES 347
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV--- 225
N +MV G D AT +A + R G LT E A K +H++ E ++
Sbjct: 348 INLFHDMVDSGVKPDDATYSALLSVCGR-GGLTR-EAA----KIHQHMLTNESTPSLEAS 401
Query: 226 -----SFTYLKERKFFMLGEF-LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
S+ + K ++ + +R+ GL D ++ L+ YA
Sbjct: 402 AGLISSYGKMAMYKDALVSYYRIREAGL---DPQVSAYDALIQGYAKGGLYVEAGSTLYA 458
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSM 304
M++AGF +++ N A+S++ +
Sbjct: 459 MNKAGFQAPVSSVNSVMEAYSKVGL 483
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
G + L F +M G PDL T+N A S + + + M V D V
Sbjct: 165 GGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAV 224
Query: 326 TYGCVVDAYL-DKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFG-KGDFHSSSEAFLEF 383
TY +VD + +LGR + + + P ++ + EA+ G+ H ++ F +
Sbjct: 225 TYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQM 284
Query: 384 KR----QRKWTYRKLIAVY 398
+R TY L+ +Y
Sbjct: 285 QRGGCAPDVETYSTLLRIY 303
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 7/190 (3%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+Y+ I G++G LE ++M + A I Y R G R+
Sbjct: 84 IYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARM 143
Query: 211 KRSR---HLIDKEGI-RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
K+ + +LI + A S L L +R G+ + DL + +N LL + +
Sbjct: 144 KKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGI-QPDL--ITYNTLLSACSS 200
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
++ F M+E+G D T+ F+ + + L M+ E PD+
Sbjct: 201 RGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAG 260
Query: 327 YGCVVDAYLD 336
Y +++AY D
Sbjct: 261 YNSLIEAYAD 270
>gi|410110133|gb|AFV61146.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rhodocnemis]
Length = 345
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 126/321 (39%), Gaps = 39/321 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ G+ K A L++ +K+ G++P+ ++ L+ Y N LEA V+ E+
Sbjct: 27 AMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREI 86
Query: 109 SFVLSVQVLSDLMDAYGRIG-----------------------------------CFNEI 133
+L + + ++D YG++G F E
Sbjct: 87 KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEA 146
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I + + +N + Y+ I +GK + E N ++EM SRG +S T + I
Sbjct: 147 IHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISI 206
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
+ + G L + +L+ S ID+ + + Y + L + L R D
Sbjct: 207 WGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHE--LKRPD-- 262
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
N+ + + AG +++ F + +AG D+T F S+ + ++ +
Sbjct: 263 NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFD 322
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
M+ PD V++AY
Sbjct: 323 KMRGLGYFPDSDVIAIVLNAY 343
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 72/170 (42%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 95 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 154
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + ++ YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 155 RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 214
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
+++ S G +D I+ Y R G + + LKR ++
Sbjct: 215 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNI 264
>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
micromera]
Length = 434
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 130/334 (38%), Gaps = 43/334 (12%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V +++ G+ K A L++ +K+ G++P+ ++ L+ Y N
Sbjct: 77 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYXENKKF 136
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--------------------------- 128
LEA V+ E+ L + + ++D YG++G
Sbjct: 137 LEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 196
Query: 129 --------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
F E I + + +N + Y+ I +GK + E N ++EM SRG
Sbjct: 197 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGI 256
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+S T + I + + G L + +L+ S ID+ + + Y +
Sbjct: 257 EPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKR 316
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L + L R D N+ + + AG +++ F + +AG D+T F S
Sbjct: 317 LLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLS 372
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ + M+ PD V++AY
Sbjct: 373 KYKKYSNVIEVFDKMRGLGYFPDSNVIAVVLNAY 406
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 158 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 217
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + ++ YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 218 RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLD 277
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 278 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 337
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 338 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVIEVFDKMRGLGY 392
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD + A+ ++ F
Sbjct: 393 FPDSNVIAVVLNAYGKLQEF 412
>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
montevidensis]
Length = 418
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L+ +K+ G++
Sbjct: 42 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVM 101
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 102 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 161
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 162 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 221
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 222 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQIL 281
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 282 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 337
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 338 DAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAY 390
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 142 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 201
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 202 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 261
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 262 RAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 321
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 322 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVVEVFDKMRGLGY 376
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 377 FPDSDVIAIVLNAYGKLQEF 396
>gi|356540373|ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 881
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/295 (16%), Positives = 116/295 (39%), Gaps = 41/295 (13%)
Query: 67 VNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126
+N +K +G ++ ++ Y +NG +A V EE+ L + + ++D +G+
Sbjct: 212 INEMKQKGFPLNSFMYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGK 271
Query: 127 IGCFNEIISIIDQVS------------------CRNADLL-----------------PEV 151
G +E + + ++ C+ D + P++
Sbjct: 272 YGELDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKAFHLFTDMQEQGLYPDPKI 331
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
+ ISC G+QG+ ++++ + M RG A + Y ++G LK
Sbjct: 332 FVTIISCLGEQGKWDIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNAGECVQALK 391
Query: 212 RSRHLIDKEGIRAVSFTYLKE---RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
L+ ++ Y ++ + M+ + + G+ + ++ N+L+ ++
Sbjct: 392 SEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIMEAEGI---EPNIVMLNMLINAFGNAG 448
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+ + + E+G PD+ T+ AF R F ++ + + M+++ PD
Sbjct: 449 RYMEAISVYHHIKESGVSPDVVTYTTLMKAFIRAKKFDEVPIIYKEMENDGCTPD 503
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 10/206 (4%)
Query: 36 IRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
IR K+ G V A LV+ G+ K A + V +KSEG+L S C L YA G
Sbjct: 357 IRGNKEYGAVY-AVLVDIYGQYGKFQNAGECVQALKSEGVLVSPSIFCVLANAYAQQGLC 415
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YS 153
+ +V + + + ++ +L+ L++A+G G + E IS+ + + + + P+V Y+
Sbjct: 416 EQVIMVLQIMEAEGIEPNIVMLNMLINAFGNAGRYMEAISVYHHI--KESGVSPDVVTYT 473
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF-----IIYYSRFGSLTEMETAYG 208
+ F + + + + KEM + G + D +I + R T M A
Sbjct: 474 TLMKAFIRAKKFDEVPIIYKEMENDGCTPDRKARQMLQVALTLIDHDRLIIKTRMLLAAK 533
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERK 234
+ LI+ +R +S T + RK
Sbjct: 534 DAMTCQLLIEYGILRQISLTISRPRK 559
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 105/274 (38%), Gaps = 45/274 (16%)
Query: 27 KNGDLAR--KIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K GDL R ++ + +GF A L+E LG + A L + G P +
Sbjct: 96 KEGDLDRAMSLLSQMEAKGFHLSSTSYACLIEALGNVGRTSEADMLFKEMVCYGYKPKLN 155
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
+L+ + G + A V +E+ S + +D Y G + S I+++
Sbjct: 156 LYHSLLRGFLKKGLLGLANGVLKEMDDLGIWRSKETYQIFLDYYVGAGRLEDTWSTINEM 215
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ L +YS+ + + G + L+E+ RG S+D+ N+ I + ++G L
Sbjct: 216 KQKGFPLNSFMYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGEL 275
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
E + +++ KEG+R T WN L
Sbjct: 276 DEALKLFKKMQ-------KEGVRPNIVT----------------------------WNSL 300
Query: 261 LLSYA--GNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ + G+F MK+ F M E G +PD F
Sbjct: 301 IKWHCKEGDF-MKAFHL-FTDMQEQGLYPDPKIF 332
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/287 (17%), Positives = 121/287 (42%), Gaps = 2/287 (0%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ +K LA+ ++ + G+ T + Y G + + E+
Sbjct: 159 SLLRGFLKKGLLGLANGVLKEMDDLGIWRSKETYQIFLDYYVGAGRLEDTWSTINEMKQK 218
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F L+ + S ++ Y G + + I +++++ R L + + I FGK G+L+
Sbjct: 219 GFPLNSFMYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGELDEA 278
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
K+M G + T N+ I ++ + G + + ++ D + +
Sbjct: 279 LKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKAFHLFTDMQEQGLYPDPKIFVTIISC 338
Query: 229 YLKERKFFMLGEFLRDVGL-GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
++ K+ ++ ++ + + G K+ G ++ +L+ Y K ++ + G
Sbjct: 339 LGEQGKWDIIKKYFESMKIRGNKEYGA-VYAVLVDIYGQYGKFQNAGECVQALKSEGVLV 397
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ F + A A+++ + + + L+ M+ E + P++V +++A+
Sbjct: 398 SPSIFCVLANAYAQQGLCEQVIMVLQIMEAEGIEPNIVMLNMLINAF 444
>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 660
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/361 (19%), Positives = 146/361 (40%), Gaps = 70/361 (19%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE-- 104
C ++ L ++ + H A Q+V ++ +G +PD T ++ C NN EA +WEE
Sbjct: 263 CNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMV 322
Query: 105 ---------------------------------LLSSSFVLSVQVLSDLMDAYGRIGCFN 131
+LS + LSV + + L+ + R G +
Sbjct: 323 KMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSID 382
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN--- 188
+ +II + + Y+ ++ + G +E EN + +M + G + D + N
Sbjct: 383 KAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLL 442
Query: 189 -------------AFIIYYSRFGSLTEMET------AYGRLKRSRHLI------DKEGIR 223
AF+ + G ++ + A+ ++K+ + + D +G++
Sbjct: 443 KGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQ 502
Query: 224 AVSFTY------LKERKFFMLGEFLRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQRE 276
A + TY L ++ L E L + L + N+ L+N++L +K Q+
Sbjct: 503 ADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQKI 562
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F+ M + PD+ T+N + S + + M+ + V PD +T+ +++ LD
Sbjct: 563 FLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGLLD 622
Query: 337 K 337
+
Sbjct: 623 E 623
>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1429
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 112/276 (40%), Gaps = 35/276 (12%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
P++A +L+N V+ GL PD T L+ + + EA V+V D
Sbjct: 263 PNVAIELLNEVRRSGLRPDIITYNTLISACSRESNLEEA---------------VKVFDD 307
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
+ Y C+ DL Y+ IS +G+ G E KE+ S+G
Sbjct: 308 MEAHY-----------------CQ-PDLW--TYNAMISVYGRCGFSGKAEQLFKELESKG 347
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
+ D+ T N+ + ++R G++ +++ + + + D+ + Y K+ + +
Sbjct: 348 YFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLAL 407
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+ RD+ L + + + +L+ S KM M G P L T++ +
Sbjct: 408 QLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGY 467
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+R + + + M+ + PD + Y ++D +L
Sbjct: 468 ARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFL 503
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 16/183 (8%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A QL ++S+G PD T +L+ +A G V + + + E++ F+ + ++
Sbjct: 336 AEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIH 395
Query: 123 AYGRIGCFNEIISIID--QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
YG+ G + + ++S R D + Y+ I GK ++ N + EM++ G
Sbjct: 396 MYGKQGQHGLALQLYRDMKLSGRTPDAI--TYTVLIDSLGKANKMVEAANVMSEMLNIGV 453
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
T +A I Y+R G E E + ++RS GIR Y ML
Sbjct: 454 KPTLRTYSALICGYARAGQRLEAEETFDCMRRS-------GIRPDQLAY-----SVMLDV 501
Query: 241 FLR 243
FLR
Sbjct: 502 FLR 504
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/313 (18%), Positives = 115/313 (36%), Gaps = 39/313 (12%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + NT+ +G P ++ L+ +G + E VV +E+ F +S + ++D
Sbjct: 789 ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILD 848
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
A+ R+ E I + + A P +Y I K ++ +E + EM GF
Sbjct: 849 AFARVSNIAEAKKIYQGM--KAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGF 906
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FM 237
D + N+ + Y+ + Y R+K D++ + Y ++ +
Sbjct: 907 RPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCS 966
Query: 238 LGEFLRDVGLGRK--------------------------------DLGNLLWNLLLLSYA 265
L +R +GL K L +++++ Y
Sbjct: 967 LMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYR 1026
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+ ++ M +AG P + T ++ V++ + L ++K + +
Sbjct: 1027 NSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLSTL 1086
Query: 326 TYGCVVDAYLDKR 338
Y V+DAYL +
Sbjct: 1087 PYSSVIDAYLKNK 1099
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 144/340 (42%), Gaps = 38/340 (11%)
Query: 32 ARKIIRYRKQEGFV-DCASL---VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A K+ K EG D + ++ R K+P A +L+N + S+G + C ++
Sbjct: 130 AHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVIS 189
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ + +EA ++ ++L + + LM + G E ++++V +N +
Sbjct: 190 GFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKV-LKNG-V 247
Query: 148 LPEVYSRAISCFG--KQGQLE-------LMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
P +++ I G ++G LE EN L +MV++G D T N I YS+ G
Sbjct: 248 CPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVG 307
Query: 199 SLTEMETAYGRLKRSRHLIDKE--GIRAVSFTYLK-ERKFFMLGEFLRDVGLGRKDLGN- 254
+ + SR L D + G FTY G+ + L + LG
Sbjct: 308 KIQD---------ASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKG 358
Query: 255 -----LLWNLLL--LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
+L+N L+ LS G +K+LQ MS+ G PD+ T+N+ +M D
Sbjct: 359 LKPSIVLYNTLIKGLSQQG-LVLKALQL-MNDMSKEGMSPDIWTYNLVINGLCKMGCVSD 416
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGL 347
+ L + PD+ T+ ++D Y KRL + G+
Sbjct: 417 ANNLLNAAIAKGYLPDIFTFNTLIDGYC-KRLKMDNAIGI 455
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/276 (19%), Positives = 111/276 (40%), Gaps = 39/276 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +++ K +G +PD T C+L++ +G + A ++EE L S+ + + L+
Sbjct: 312 ASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIK 371
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ G + + +++ +S + P++ Y+ I+ K G + N L +++G+
Sbjct: 372 GLSQQGLVLKALQLMNDMS--KEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGY 429
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
D T N I Y + +M+ A G L + G+ TY
Sbjct: 430 LPDIFTFNTLIDGYCK---RLKMDNAIGILDS----MWSHGVTPDVITY----------- 471
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
N +L K + + F + E G P++ T+NI +
Sbjct: 472 -----------------NSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLC 514
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
+ + LE +++ + PD V++G V+ + +
Sbjct: 515 KARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCN 550
>gi|356569143|ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Glycine max]
Length = 658
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 142/331 (42%), Gaps = 47/331 (14%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ ++ R K+ HLAH L + ++ +GL PD T L+ + +G + ++ + W + +
Sbjct: 141 LLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHG-LFDSSLFWLQQMEQD 199
Query: 110 FVLSVQVL-SDLMDAYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRAISCFGKQGQLE 166
V VL S+L+D ++ +++ ISI ++ S + DL+ Y+ I+ FGK
Sbjct: 200 NVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTISPDLI--AYNSMINVFGKAKLFR 257
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L+EM D+ + + + Y + +++ + A+S
Sbjct: 258 EARLLLQEMRDNAVQPDTVSYSTLLAIY---------------------VDNQKFVEALS 296
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
FF + E + L N+++ Y K R F M + G
Sbjct: 297 L-------FFEMNE-------AKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQ 342
Query: 287 PDLTTFNIRAVAFSRMSMFWD-LHLSLEHMKHESVGPDLVTYGCVVDAY---LDKRLGRN 342
P++ ++N + +F + +HL M+ + V ++VTY +++ Y L+ N
Sbjct: 343 PNVVSYNTLLRVYGEADLFGEAIHL-FRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATN 401
Query: 343 LDFGLSKMNLDDSPVV-STDPYVFEAFGKGD 372
L + K ++ + + ST ++E GK D
Sbjct: 402 LIQEMKKRGIEPNAITYSTIISIWEKAGKLD 432
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 126/308 (40%), Gaps = 17/308 (5%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ P A +L +++ G+ P+ + L+ Y EA ++ +
Sbjct: 313 CNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQ 372
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
S +V + +++ YG+ + ++I ++ R + YS IS + K G+L+
Sbjct: 373 SKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLD 432
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 433 RAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIGILA 492
Query: 227 FTYLKERKFFMLGEFL--RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
E ++ + R+V KD+ ++ ++ ++ N K ++ F +M G
Sbjct: 493 RAGRIEEATWVFRQAFDAREV----KDIS--VFGCMINLFSKNKKYGNVVEVFEKMRVVG 546
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES--VGPD------LVTYGCVVDAYLD 336
+ PD + AF ++ F D +L HE V PD L YG D +
Sbjct: 547 YFPDSDVIALVLNAFGKLREF-DKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMV 605
Query: 337 KRLGRNLD 344
+ L LD
Sbjct: 606 ESLFEKLD 613
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 121/299 (40%), Gaps = 43/299 (14%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
GF EA V++ ++S S++ S LM A GR I+ +++++ L P +Y
Sbjct: 206 GFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEM--ETLGLRPNIY 263
Query: 153 SRAIS--CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+ I G+ G+++ LK M G D T I G L + + Y ++
Sbjct: 264 TYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKM 323
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF-K 269
+ S H D L+ + L+S GN+
Sbjct: 324 RASSHKPD------------------------------------LVTYITLMSKFGNYGD 347
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+++++R + M G+ PD+ T+ I A + L+ M+ + P+L TY
Sbjct: 348 LETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNT 407
Query: 330 VVDAYLD-KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKRQ 386
++ L+ +RL L+ + +L +P + + +GK GD + + F + K++
Sbjct: 408 LISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKR 466
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 111/286 (38%), Gaps = 41/286 (14%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L ++ A +L N ++S G+ P + + Y G +A +E++
Sbjct: 407 TLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKR 466
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ S+ + + + +G E I + + N L P+ Y+ + C+ K GQ++
Sbjct: 467 GIMPSIAACNASLYSLAEMGRIREAKDIFNDI--HNCGLSPDSVTYNMMMKCYSKAGQID 524
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L EM+S G D N+ I + G + E +GRLK K V+
Sbjct: 525 KATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDL-----KLAPTVVT 579
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+ L GLG++ G LL L L F M E+G
Sbjct: 580 YNILI-------------TGLGKE--GKLLKALDL---------------FGSMKESGCP 609
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVV 331
P+ TFN + DL L + M + PD++TY ++
Sbjct: 610 PNTVTFNALLDCLCKNDAV-DLALKMFCRMTIMNCSPDVLTYNTII 654
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 56/309 (18%), Positives = 118/309 (38%), Gaps = 10/309 (3%)
Query: 30 DLARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A I++ + EG V L++ L K A +L +++ PD T L
Sbjct: 279 DDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITL 338
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
M + N G + + W E+ + + V + L++A + G ++ ++D + R
Sbjct: 339 MSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGI 398
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
Y+ IS +L+ M S G + + + FI YY + G +
Sbjct: 399 VPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALD 458
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+ ++K+ + A ++ + + + D+ ++ +N+++ Y+
Sbjct: 459 TFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYS 518
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF---SRMSMFWDLHLSLEHMKHESVGP 322
++ + M G PD+ N R+ W + L+ +K + P
Sbjct: 519 KAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLK---LAP 575
Query: 323 DLVTYGCVV 331
+VTY ++
Sbjct: 576 TVVTYNILI 584
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 108/277 (38%), Gaps = 16/277 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L +K+ G P+ T L+ + + + E ++ E+L ++ + ++
Sbjct: 807 ALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIIS 866
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A + N+ + + ++ + P Y I K G+ E +EM
Sbjct: 867 ALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKP 926
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA--VSFTYLKERKFFMLG- 239
+ A N I + FG + A KR + KEGIR S+T L E FM G
Sbjct: 927 NCAIYNILI---NGFGKAGNVNIACDLFKR----MIKEGIRPDLKSYTILVEC-LFMTGR 978
Query: 240 -----EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
+ ++ L D + +NL++ + +++ F M G P+L T+N
Sbjct: 979 VDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNA 1038
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ F M E ++ + P++ TY ++
Sbjct: 1039 LILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALI 1075
>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/295 (17%), Positives = 122/295 (41%), Gaps = 8/295 (2%)
Query: 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102
G D ++ G+ +P +A ++ GL P+ + +L+ +A G + A+ ++
Sbjct: 106 GIHDFNLMIAAYGKLGQPGIAELSFTEMREVGLEPNVACFTSLLEAHARTGNFVRAESIY 165
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNE---IISIIDQVSCRNADLLPEVYSRAISCF 159
+E+L + + ++A + FN+ I +D+ + D +Y+ + +
Sbjct: 166 QEMLKTGPAPTEVTYQVYINALCKAERFNDAERIFKCLDESAEAKPD--ARLYNLMLHTY 223
Query: 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
GK G+ + ++M G + T N+ + + ++ + E ++ ++ D
Sbjct: 224 GKAGKFSEQQALFRQMKGAGVPMTVVTFNSLMAFQK---TVADAEACLRHMQAAKIKPDV 280
Query: 220 EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
+ Y K R+ R++ + +N LL +YA +++ + F
Sbjct: 281 ITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKS 340
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M + PD+ ++ A++ L+ MK + P++VTYG ++ Y
Sbjct: 341 MGQDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGY 395
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 30/197 (15%)
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I+ +GK GQ + E + EM G + A + + ++R G+ E+ Y + ++
Sbjct: 114 IAAYGKLGQPGIAELSFTEMREVGLEPNVACFTSLLEAHARTGNFVRAESIYQEMLKT-- 171
Query: 216 LIDKEGIRAVSFTYL--------------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
G TY ER F L E R L+NL+L
Sbjct: 172 -----GPAPTEVTYQVYINALCKAERFNDAERIFKCLDESAEAKPDAR------LYNLML 220
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
+Y K Q F +M AG + TFN +AF + D L HM+ +
Sbjct: 221 HTYGKAGKFSEQQALFRQMKGAGVPMTVVTFN-SLMAFQKT--VADAEACLRHMQAAKIK 277
Query: 322 PDLVTYGCVVDAYLDKR 338
PD++TY +++AY R
Sbjct: 278 PDVITYTGLINAYSKAR 294
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 132/300 (44%), Gaps = 31/300 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ L + ++ A+ L+ + G +PD T L+ + + +A V+E+L++
Sbjct: 120 SLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR 179
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
F V S L+D + G E I + ++ ++ +P Y+ IS F + G+++
Sbjct: 180 GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI-KSGSCMPNTVTYNSLISGFCRMGKMD 238
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR--A 224
N L+ M G S D T + + F L ++ AY L + + ++G+
Sbjct: 239 EAMNLLERMAETGSSPDVVT---YTTLMNGFCKLARLDDAYDLLNQ----MTRKGLTPDV 291
Query: 225 VSFTYL-----KERKF----FMLGEFLRDVGLGRKDLGNLLW--NLLLLSYAGNFKMKSL 273
V+FT L +E + +LGE + RK ++ N +L Y +++
Sbjct: 292 VTFTSLMDGLCRENRLSDAVHILGE------MRRKSCSPTVYTYNTILDGYCRANQLEE- 344
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
R+FM + E P++ +FNI +++ + +E + PD+V Y V+D
Sbjct: 345 ARKFM-LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDG 403
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 125/326 (38%), Gaps = 72/326 (22%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVV 101
FV SL++ L + K+ A + + S+G PD T A++ LC N + EA+
Sbjct: 11 FVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR--LHEARKF 68
Query: 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS-----------------CRN 144
EE+ + + +V + L+D + G +E ++++ ++ C+
Sbjct: 69 LEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKA 128
Query: 145 A------DLLPEV-----------YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
DLL E+ Y+ I+ F K + + +++V+RGF D T
Sbjct: 129 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 188
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL 247
+ I + G L E +GR+ +S +
Sbjct: 189 SCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPN---------------------------- 220
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
+ +N L+ + KM RM+E G PD+ T+ F +++ D
Sbjct: 221 ------TVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD 274
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDA 333
+ L M + + PD+VT+ ++D
Sbjct: 275 AYDLLNQMTRKGLTPDVVTFTSLMDG 300
>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
Length = 561
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 41/245 (16%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VYS+ IS GK+GQ + EM + G D++ NA I
Sbjct: 135 VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALI------------------- 175
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ HL ++ +A+ K R G F + G+ R + +N+LL ++A + K+
Sbjct: 176 --TAHLHTRDKAKALE----KVR-----GYFDKMKGMERCQPNVVTYNILLRAFAQSGKV 224
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ F + + PD+ TFN A+ + M ++ L M+ PD++T+ +
Sbjct: 225 DQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVL 284
Query: 331 VDAYLDKRLGRNLDFGL-SKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKW 389
+D+Y K+ ++ S M + P + T + +GK +E W
Sbjct: 285 IDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAE----------W 334
Query: 390 TYRKL 394
++K+
Sbjct: 335 VFKKM 339
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY---ANNGFVLEAQVVWEE 104
+ L+ +G+K + +A L + +K+ G PD S AL+ + + LE + +
Sbjct: 137 SKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYFD 196
Query: 105 LLS-----SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAIS 157
+ V++ +L G++ N + +D + + P+VY+ +
Sbjct: 197 KMKGMERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDM-----SPVSPDVYTFNGVMD 251
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
+GK G ++ ME L M S D T N I Y + +ME + L RS+
Sbjct: 252 AYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKE 309
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/279 (20%), Positives = 112/279 (40%), Gaps = 36/279 (12%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ PD T L+ N G + +A +W+E +S + ++ +M+ Y + ++
Sbjct: 530 GIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDV 589
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
++ +++ + +L VY+ I + G + L+ M S+G + AT
Sbjct: 590 ENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCAT------- 642
Query: 194 YSRFGSLTEMETAYGRLKRSRHLID---KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
+ SL G ++ ++HLID KEG Y ++G + + LG+
Sbjct: 643 ---YSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTA-----LIGGYCK---LGQM 691
Query: 251 DLGNLLW---------------NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
D W +++ Y M+ ++M E+G PD+ T+N+
Sbjct: 692 DTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVL 751
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F + + + + M E + D +TY +V +
Sbjct: 752 TNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHGW 790
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 117/296 (39%), Gaps = 2/296 (0%)
Query: 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
+C S+V L +K + H A + + S P + L L+ +G LEA +W L
Sbjct: 397 NCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRL 456
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
L S + L+ G E I+ ++ R + Y+ I F +G++
Sbjct: 457 LEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKV 516
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E +EM RG D T N + G L + + K S + + +
Sbjct: 517 EGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIM 576
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y K + + ++ + +L ++++N+++ ++ N + + + M G
Sbjct: 577 MEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGI 636
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
P+ T++ + + D ++ M+ E P++V Y ++ Y +LG+
Sbjct: 637 LPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYC--KLGQ 690
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 7/167 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A QL+ +KS+G+LP+ +T +L+ N G V +A+ + +E+ FV +V + L+
Sbjct: 624 ALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIG 683
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y ++G + S ++ N Y+ I + K G +E N L +M G
Sbjct: 684 GYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVP 743
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
D T N + + F +M+ A+ + + EG+ TY
Sbjct: 744 DVVTYN---VLTNGFCKANDMDNAFKVCDQ----MATEGLPVDEITY 783
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 103/273 (37%), Gaps = 16/273 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L + +G+ P+ T AL+ F + + +E++ + F +V V ++L+D
Sbjct: 274 AFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLID 333
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y ++G + I D + +N + F K Q+E EN L+E++S G S+
Sbjct: 334 GYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSI 393
Query: 183 DSATGNAFII-------YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-KERK 234
+ + Y+S F + ++ SR+ + + + L K+ K
Sbjct: 394 HPDNCYSVVHWLCKKFRYHSAF--------RFTKMMLSRNFRPSDLLLTMLVCGLCKDGK 445
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
E + + N L+ G K+ R M E G D T+N
Sbjct: 446 HLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNA 505
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ F E M + PD+ TY
Sbjct: 506 LILGFCNEGKVEGCFRLREEMTKRGIQPDIYTY 538
>gi|410110143|gb|AFV61151.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
velutina]
Length = 382
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 13 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 72
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 73 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 132
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 133 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 192
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 193 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 252
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 253 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAV 308
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 309 DAGEVKDITVFERMVHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAY 361
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 113 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 172
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 173 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 232
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 233 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 292
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + V G KD+ + LLS K ++ F +M G+
Sbjct: 293 GAGRIEEATYV---FRQAVDAGEVKDITVFERMVHLLSKYK--KYSNVVEVFDKMRGLGY 347
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 348 FPDSDVIAIVLNAYGKLQEF 367
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 28 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 87
Query: 337 KR 338
+
Sbjct: 88 NK 89
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/279 (20%), Positives = 112/279 (40%), Gaps = 36/279 (12%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ PD T L+ N G + +A +W+E +S + ++ +M+ Y + ++
Sbjct: 553 GIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDV 612
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
++ +++ + +L VY+ I + G + L+ M S+G + AT
Sbjct: 613 ENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCAT------- 665
Query: 194 YSRFGSLTEMETAYGRLKRSRHLID---KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
+ SL G ++ ++HLID KEG Y ++G + + LG+
Sbjct: 666 ---YSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTA-----LIGGYCK---LGQM 714
Query: 251 DLGNLLW---------------NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
D W +++ Y M+ ++M E+G PD+ T+N+
Sbjct: 715 DTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVL 774
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F + + + + M E + D +TY +V +
Sbjct: 775 TNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHGW 813
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 117/296 (39%), Gaps = 2/296 (0%)
Query: 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
+C S+V L +K + H A + + S P + L L+ +G LEA +W L
Sbjct: 420 NCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRL 479
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
L S + L+ G E I+ ++ R + Y+ I F +G++
Sbjct: 480 LEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKV 539
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E +EM RG D T N + G L + + K S + + +
Sbjct: 540 EGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIM 599
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y K + + ++ + +L ++++N+++ ++ N + + + M G
Sbjct: 600 MEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGI 659
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
P+ T++ + + D ++ M+ E P++V Y ++ Y +LG+
Sbjct: 660 LPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYC--KLGQ 713
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 7/167 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A QL+ +KS+G+LP+ +T +L+ N G V +A+ + +E+ FV +V + L+
Sbjct: 647 ALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIG 706
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y ++G + S ++ N Y+ I + K G +E N L +M G
Sbjct: 707 GYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVP 766
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
D T N + + F +M+ A+ + + EG+ TY
Sbjct: 767 DVVTYN---VLTNGFCKANDMDNAFKVCDQ----MATEGLPVDEITY 806
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 103/273 (37%), Gaps = 16/273 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L + +G+ P+ T AL+ F + V +E++ S F +V V ++L+D
Sbjct: 297 AFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLID 356
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y ++G + I D + +N + F K Q+E EN L+E++S G S+
Sbjct: 357 GYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSI 416
Query: 183 DSATGNAFII-------YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-KERK 234
+ + Y+S F + ++ SR+ + + + L K+ K
Sbjct: 417 HPDNCYSVVHWLCKKFRYHSAF--------RFTKMMLSRNFRPSDLLLTMLVCGLCKDGK 468
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
E + + N L+ G K+ R M E G D T+N
Sbjct: 469 HLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNA 528
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ F E M + PD+ TY
Sbjct: 529 LILGFCNEGKVEGCFRLREEMTKRGIQPDIYTY 561
>gi|410110123|gb|AFV61141.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
macrophylla]
Length = 381
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 12 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 71
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 72 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 131
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ I +GK
Sbjct: 132 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGK 191
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 192 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 251
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 252 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 307
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ M+ PD V++AY
Sbjct: 308 DAGEVKDITVFERMIHLLSKXKKYSNVVEVFNKMRGLGYFPDSDVIAXVLNAY 360
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 27 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 86
Query: 337 KR 338
+
Sbjct: 87 NK 88
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 96/449 (21%), Positives = 165/449 (36%), Gaps = 71/449 (15%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
TF++ + G+ K F S L +++ Q + +L++ L + +
Sbjct: 569 TFNILIAGACKAGNFEQASA--------LFEEMVAKNLQPDVMTFGALIDGLCKAGQVEA 620
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +++ + + G+ P+ T AL+ +G + EA EE++SS V L+
Sbjct: 621 ARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVY 680
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A R ++ + ++ ++ D Y+ + K GQ E L+EMV +G
Sbjct: 681 ALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHP 740
Query: 183 DSATGNAFIIYYSRFGSLTEME----------------------------TAYGRLKRSR 214
D T N I + G L E GR+ +R
Sbjct: 741 DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEAR 800
Query: 215 HLIDKEGIRAVS------FTY-------LKERKFFMLGEFLRDVGLG--RKDLGNLLWNL 259
LI +E +R TY K+ E +R + G R + ++
Sbjct: 801 ELI-QEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFST 859
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
L+ + F M G+ P++ T+N+ + H +E M +
Sbjct: 860 LIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKG 919
Query: 320 VGPDLVTYGCVVDAY-----LDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFH 374
V PD++TY +VDA+ +D+ L L G++ +P V T + + K D
Sbjct: 920 VTPDVITYSVLVDAFCKASHVDEAL--ELLHGMASRGC--TPNVVTFNSIIDGLCKSD-- 973
Query: 375 SSSEAFLEFKRQR--------KWTYRKLI 395
S EAF F K TY LI
Sbjct: 974 QSGEAFQMFDDMTLKHGLAPDKITYCTLI 1002
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 35/301 (11%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVK-SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
S+++ L + + A Q+ + + GL+PD T C L+ G +A+ + + +
Sbjct: 470 SIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD 529
Query: 108 S---SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQ 162
+F + LS L D + +N ++ + +L+P+ ++ I+ K
Sbjct: 530 PDTYAFNCCINGLSKLGDVSRALQVYNRMLEL---------ELVPDKVTFNILIAGACKA 580
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G E +EMV++ D T FG+L + G+++ +R ++D G
Sbjct: 581 GNFEQASALFEEMVAKNLQPDVMT----------FGALIDGLCKAGQVEAARDILDLMGN 630
Query: 223 RAVS---FTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
V TY K + +FL ++ ++ + L+ + +
Sbjct: 631 LGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDD 690
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ + G+ PD T+NI + LE M + PD+VTY ++D
Sbjct: 691 ALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLID 750
Query: 333 A 333
+
Sbjct: 751 S 751
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 113/294 (38%), Gaps = 25/294 (8%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+LV L + K AH ++ ++ +G+ PD T L+ + V EA + + S
Sbjct: 400 ALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASR 459
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCF---GKQG 163
+V + ++D + E + D ++ ++ L+P+ Y I G+ G
Sbjct: 460 GCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHG-LVPDKITYCTLIDGLFRTGRAG 518
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
Q E + + + + + F N I S+ G ++ Y R+ + DK
Sbjct: 519 QAEALLDAMPDPDTYAF-------NCCINGLSKLGDVSRALQVYNRMLELELVPDK---- 567
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLG-NLLWNLLLLSYAGNFKMKSLQREFMR--- 279
V+F L G F + L + + NL +++ + K+ Q E R
Sbjct: 568 -VTFNILIAGA-CKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDIL 625
Query: 280 --MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M G P++ T+N + + LE M PD +TYG +V
Sbjct: 626 DLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLV 679
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 94/262 (35%), Gaps = 17/262 (6%)
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+V Y+ I K G LE +M SR + T + I + G + E
Sbjct: 249 PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEAREL 308
Query: 207 YGRLKRSRHLIDKEGIRAVSF--TYLKERKFFMLGEFLRDVGLG--RKDLGNLLWNLLLL 262
+ R + I SF K+ E +R + G R + ++ L+
Sbjct: 309 IQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLID 368
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
++ F M G+ P++ T+N + H +E M + V P
Sbjct: 369 GLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTP 428
Query: 323 DLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFL 381
D++TY +VDA+ R+ L+ + +P V T + + K D S EAF
Sbjct: 429 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSD--RSGEAFQ 486
Query: 382 EFKRQR--------KWTYRKLI 395
F K TY LI
Sbjct: 487 MFDDMALKHGLVPDKITYCTLI 508
>gi|410110137|gb|AFV61148.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rubella]
Length = 440
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 58 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 117
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++
Sbjct: 118 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLSMAKEADKL 177
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ I +GK
Sbjct: 178 FWGMRKMGIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYGK 237
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 238 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 297
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 298 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 353
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 354 DAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAY 406
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 104/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P + L+ Y + EA ++ +
Sbjct: 158 CNIMIDVYGQLSMAKEADKLFWGMRKMGIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQ 217
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + ++ YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 218 RKNIEQTVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 277
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 278 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 337
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 338 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVVEVFDKMRGLGY 392
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD + A+ ++ F
Sbjct: 393 FPDSNVIAVVLNAYGKLQEF 412
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 73 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 132
Query: 337 KR 338
+
Sbjct: 133 NK 134
>gi|410110077|gb|AFV61118.1| pentatricopeptide repeat-containing protein 123, partial
[Coelocarpum swinglei]
Length = 440
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 139/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G++
Sbjct: 58 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVM 117
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ S+ AL+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 118 PNASSYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 177
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 178 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 237
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 238 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQIL 297
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 298 FQTMIXAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 353
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M PD V++AY
Sbjct: 354 DAGEVKDITVFERMIHLFSKYKKYANVVEVFDKMYGLGYFPDSNVIALVLNAY 406
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F D + M+ V P+ +Y ++ Y++
Sbjct: 73 FSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPNASSYSALLTMYVE 132
Query: 337 KR 338
+
Sbjct: 133 NK 134
>gi|356513749|ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial-like [Glycine max]
Length = 819
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 126/336 (37%), Gaps = 66/336 (19%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
S G+ + + ++ C G LE ++EL S L + + DA +G
Sbjct: 363 SRGVKTNCVVVSCILHCLGEMGMTLEVVDQFKELKESGMFLDGVAYNIVFDALCMLGKVE 422
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ + +++++ + L + Y+ I+ + QG L N KEM +G D T N
Sbjct: 423 DAVEMVEEMKSKRLGLDVKHYTTLINGYCLQGDLVTAFNMFKEMKEKGLKPDIVTYNVLA 482
Query: 192 IYYSRFGSLTE-------METAYGRLKRSRHLIDKEGIRA--------VSFTYLKER--- 233
SR G E ME+ + + H + EG+ + V F L+++
Sbjct: 483 AGLSRNGHARETVKLLDFMESQGMKPNSTTHKMIIEGLCSGGKVLEAEVYFNSLEDKNIE 542
Query: 234 ------------------------------------------KFFMLGEFLRDVGL-GRK 250
K M G+ + V L R
Sbjct: 543 IYSAMVNGYCETDLVKKSYEVFLKLLNQGDMAKKASCFKLLSKLCMTGDIEKAVKLLDRM 602
Query: 251 DLGN-----LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
L N ++++ +L + MK+ + F GF PD+ T+ I ++ RM+
Sbjct: 603 LLSNVEPSKIMYSKILAALCQAGDMKNARTLFDVFVHRGFTPDVVTYTIMINSYCRMNCL 662
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
+ H + MK + PD++T+ ++D L + LG+
Sbjct: 663 QEAHDLFQDMKRRGIKPDVITFTVLLDGSLKEYLGK 698
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 65/335 (19%), Positives = 130/335 (38%), Gaps = 49/335 (14%)
Query: 13 KFKRFN-VPSHQTHP-------KNGDLARKIIRYRKQE--GFVD---C-ASLVEDLGRKK 58
+ KRF +P+ T+ K GDL + + + + E G + C A+ +E L
Sbjct: 220 QLKRFGFIPNCYTYAIVIKALCKKGDLKQPLCVFEEMERVGVIPHSYCFAAYIEGLCNNH 279
Query: 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
+ L ++++ + + A++ + N + EAQ V++++ V V V S
Sbjct: 280 RSDLGYEVLQAFRKGNAPLEVYAYTAVVRGFCNEMKLDEAQGVFDDMERQGVVPDVYVYS 339
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+ Y + +++ D++ R V S + C G+ G + + KE+
Sbjct: 340 SLIHGYCKSHNLLRALALHDEMISRGVKTNCVVVSCILHCLGEMGMTLEVVDQFKELKES 399
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
G +D G A+ I + L ++E A ++ +
Sbjct: 400 GMFLD---GVAYNIVFDALCMLGKVEDAVEMVEEMKS----------------------- 433
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+ +GL K + L+ Y + + F M E G PD+ T+N+ A
Sbjct: 434 ----KRLGLDVKH-----YTTLINGYCLQGDLVTAFNMFKEMKEKGLKPDIVTYNVLAAG 484
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
SR + L+ M+ + + P+ T+ +++
Sbjct: 485 LSRNGHARETVKLLDFMESQGMKPNSTTHKMIIEG 519
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 68/357 (19%), Positives = 136/357 (38%), Gaps = 64/357 (17%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L L R +L++ ++S+G+ P+++T ++ + G VLEA+V + L +
Sbjct: 481 LAAGLSRNGHARETVKLLDFMESQGMKPNSTTHKMIIEGLCSGGKVLEAEVYFNSLEDKN 540
Query: 110 FVL----------------SVQVLSDLM---DAYGRIGCFN------------EIISIID 138
+ S +V L+ D + CF + + ++D
Sbjct: 541 IEIYSAMVNGYCETDLVKKSYEVFLKLLNQGDMAKKASCFKLLSKLCMTGDIEKAVKLLD 600
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
++ N + +YS+ ++ + G ++ V RGF+ D T I Y R
Sbjct: 601 RMLLSNVEPSKIMYSKILAALCQAGDMKNARTLFDVFVHRGFTPDVVTYTIMINSYCRMN 660
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIR--AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
L E + +KR GI+ ++FT L + L E+L G++
Sbjct: 661 CLQEAHDLFQDMKR-------RGIKPDVITFTVLLDGS---LKEYL-----GKR------ 699
Query: 257 WNLLLLSYAGNFKMKSLQREFM--RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
S G K SL + M + +PD+ + + + F +
Sbjct: 700 -----FSSHGKRKTTSLYVSTILRDMEQMKINPDVVCYTVLMDGHMKTDNFQQAVSLFDK 754
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
M + PD +TY +V ++ +++ ++ +N S ++ D ++ A +G
Sbjct: 755 MIESGLEPDTITYTALVSGLCNR---GHVEKAVTLLNEMSSKGMTPDVHIISALKRG 808
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 89/414 (21%), Positives = 152/414 (36%), Gaps = 99/414 (23%)
Query: 41 QEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100
Q V +L++ L R + A ++ + S G+ PD +T LM + G + A
Sbjct: 194 QPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALR 253
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII----------DQVS--------C 142
V +++ + + ++ L++ Y ++G + + I DQV+ C
Sbjct: 254 VKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLC 313
Query: 143 RNA---------DLL------PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+N DL+ P+V Y+ I+C K G+L+ + + +MV RG D+
Sbjct: 314 QNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTT 373
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T N I+ S L E L +R L K G+ +T+
Sbjct: 374 TFNTLIVALSSQNRLEEA------LDLARELTVK-GLSPDVYTF---------------- 410
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
N+L N L + + R F M +G PD T+NI M
Sbjct: 411 --------NILINALCKVGDPHLGI----RLFEEMKSSGCTPDEVTYNILIDHLCSMGKL 458
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVF 365
+ L M+ VTY ++DA KM ++++
Sbjct: 459 GNALDLLNEMESNGCPRSTVTYNTIIDAL------------CKKMRIEEAE--------- 497
Query: 366 EAFGKGDFHSSSEAFLEF--------KRQRKWTYRKLIAVYLKKQLRRNQIFWN 411
E F + D S + + F K +R +LI +K+ L+ N I +N
Sbjct: 498 EVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYN 551
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 32/187 (17%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VY + G G +LME ++EM G V + +F+ +Y RL
Sbjct: 91 VYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFV-------------ESYARL 137
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+R +D +L + D + D +++N LL K+
Sbjct: 138 RRFDDAVD-----------------LVLNQLDNDTFGVQAD--TVVFNHLLNVLVEGSKL 178
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
K L+ + M+ G PD+ T N A R L LE M V PD T+ +
Sbjct: 179 KLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTL 238
Query: 331 VDAYLDK 337
+ ++++
Sbjct: 239 MQGFIEE 245
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 62/138 (44%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ L + K+ A +L+ + EGL P+N T +++ Y G + +A + E + ++
Sbjct: 517 TLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTAN 576
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F + V L++ + G + ++ + + P+ Y+ I ++ L
Sbjct: 577 GFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDA 636
Query: 169 ENTLKEMVSRGFSVDSAT 186
N +EM G D+ T
Sbjct: 637 LNLFREMTEVGEPPDALT 654
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 92/237 (38%), Gaps = 14/237 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +VN + G LPD +T L++ ++ + EA + EL V + L++
Sbjct: 356 AKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILIN 415
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A ++G + I + +++ Y+ I G+L + L EM S G
Sbjct: 416 ALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPR 475
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI--RAVSFTYL-----KERKF 235
+ T N I + + E E + ++ D +GI AV+F L K ++
Sbjct: 476 STVTYNTIIDALCKKMRIEEAEEVFDQM-------DAQGISRSAVTFNTLIDGLCKAKRI 528
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
E + + N+ +N +L Y +K M+ GF D+ T+
Sbjct: 529 DDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTY 585
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 103/270 (38%), Gaps = 14/270 (5%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
++G PD T + NG V A V + +L V + +++ + G +
Sbjct: 295 ADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELD 354
Query: 132 EIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
E I++Q+ R LP+ ++ I Q +LE + +E+ +G S D T N
Sbjct: 355 EAKGIVNQMVDRGC--LPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNI 412
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM--LG---EFLRD 244
I + G + +K S D+ V++ L + M LG + L +
Sbjct: 413 LINALCKVGDPHLGIRLFEEMKSSGCTPDE-----VTYNILIDHLCSMGKLGNALDLLNE 467
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ + +N ++ + +++ + F +M G TFN +
Sbjct: 468 MESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKR 527
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D +E M E + P+ +TY ++ Y
Sbjct: 528 IDDATELIEQMVKEGLQPNNITYNSILTHY 557
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 65/151 (43%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ L + PHL +L +KS G PD T L+ + G + A + E+ S+
Sbjct: 413 LINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNG 472
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
S + ++DA + E + DQ+ + ++ I K +++
Sbjct: 473 CPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDAT 532
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+++MV G ++ T N+ + +Y + G++
Sbjct: 533 ELIEQMVKEGLQPNNITYNSILTHYCKQGNI 563
>gi|224119538|ref|XP_002318099.1| predicted protein [Populus trichocarpa]
gi|222858772|gb|EEE96319.1| predicted protein [Populus trichocarpa]
Length = 426
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 104/260 (40%), Gaps = 37/260 (14%)
Query: 77 PDNSTLCALMLCYANNGFVL-EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135
PD+ T C ++ G EA +E + S +VL L+ ++ G E +
Sbjct: 8 PDHVTCCIMITVMRKKGCTAKEAWEFFERMTRKGVKWSPEVLGALIKSFCDEGLKKEALI 67
Query: 136 IIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
I ++ R +Y+ + + K Q+E E EM ++G SAT N + YS
Sbjct: 68 IQTEMERRGISSNAIIYNTLMDSYSKSNQIEEAEGLYSEMQAKGLKPTSATFNILMDAYS 127
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL 255
R + +I+K +L E ++D GL
Sbjct: 128 R--------------RMQPDIIEK-----------------LLLE-MQDAGLAPNAKS-- 153
Query: 256 LWNLLLLSYAGNFKMKSLQRE-FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ L+ +Y KM + + F+RM +AG P ++ A+S +++ E+
Sbjct: 154 -YTCLISAYGRQKKMSDMAADAFLRMKKAGIKPTSYSYTALIHAYSVSGWHEKAYITFEN 212
Query: 315 MKHESVGPDLVTYGCVVDAY 334
M+ E + P + TY ++DA+
Sbjct: 213 MQREGIKPSIETYTTLLDAF 232
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 123/307 (40%), Gaps = 45/307 (14%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
L+ +K+ A+ L + G LP T +M G V +A+ + +++
Sbjct: 282 PLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNE 341
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ + + L+ Y R+G F E + + ++ R+ +L+P V Y+ I + G L+
Sbjct: 342 DLMPDLVSYNTLIYGYSRLGNFAEALLLFSEL--RSKNLVPSVVTYNTLIDGGCRTGNLD 399
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIR 223
+ + +M+ G D T F I F + G L ++ L D+ G++
Sbjct: 400 IAKGMKDDMIKHGLCPDVVT---FTILVRGFCQM-------GNLPMAKELFDEMLSRGLK 449
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
Y ++GE LGN + F MK M
Sbjct: 450 PDCIAYTTR----IVGEL---------KLGN---------PSKAFGMKE------EMKAE 481
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNL 343
GF PDL T+N+ ++ F D + ++ M+ E + PD VTY ++ A+L L R
Sbjct: 482 GFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKA 541
Query: 344 DFGLSKM 350
+ S M
Sbjct: 542 EEVFSDM 548
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/334 (20%), Positives = 139/334 (41%), Gaps = 31/334 (9%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL R+++ V +++ L R + A + ++ + +E L+PD + L+ Y
Sbjct: 298 DLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGY 357
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
+ G EA +++ EL S + V SV + L+D R G + + D + L P
Sbjct: 358 SRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMI--KHGLCP 415
Query: 150 EV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
+V ++ + F + G L + + EM+SRG D I+ + G+ ++ A+
Sbjct: 416 DVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSK---AF 472
Query: 208 GRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
G + + EG TY K F E ++ + L ++ + +
Sbjct: 473 GM----KEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSI 528
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
+ ++ + ++ + F M + G HP + T+ + +++ + M+ + V
Sbjct: 529 IHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGV 588
Query: 321 GPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD 354
P+++TY ++ +GL K N+ D
Sbjct: 589 SPNVITYNALI-------------YGLCKENMMD 609
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 61/129 (47%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A++LV ++ EG++PD+ T +++ + +G + +A+ V+ ++L SV + L+
Sbjct: 506 ANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIH 565
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+Y G + D++ + Y+ I K+ +++ N EM S+G S
Sbjct: 566 SYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSP 625
Query: 183 DSATGNAFI 191
+ T I
Sbjct: 626 NKYTYTILI 634
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/272 (18%), Positives = 108/272 (39%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L++ + + G+ P+ + +++ + G V +A V E+++ +L V + ++
Sbjct: 313 AVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLS 372
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ G D++ + Y+ I+ + G+L+ E L+EM++R V
Sbjct: 373 GFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDV 432
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T + Y + G + E + + + + A+S K+ E L
Sbjct: 433 DEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELL 492
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
++ +L +N L+ + R M AG PD+ T+ A +
Sbjct: 493 HEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKS 552
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
H L+ M + P +VTY +++ +
Sbjct: 553 GELDRAHDLLQEMLDNGIKPTIVTYNVLMNGF 584
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 18/235 (7%)
Query: 68 NTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
+ ++ +GL D T L+ LC A G + EA+ V +E+L+ + + L+D Y
Sbjct: 388 DEMQRKGLATDGVTYTTLINGLCRA--GELKEAEKVLQEMLARRLDVDEVTYTVLVDGYC 445
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ G E + + + R Y+ KQG ++ L EM ++G +++
Sbjct: 446 KRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNAC 505
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK-ERKFFMLGEFLRD 244
T N+ I + G L + R+ +D G++ +TY GE R
Sbjct: 506 TYNSLINGLCKAGYLDQA-------MRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRA 558
Query: 245 VGLGRKDLGN------LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
L ++ L N + +N+L+ + + +++ ++ M E HP+ TT+N
Sbjct: 559 HDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYN 613
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 57/292 (19%), Positives = 117/292 (40%), Gaps = 26/292 (8%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
LV+ ++ K A Q+ NT+ G+ P+ T AL G V A + E+ +
Sbjct: 440 LVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKG 499
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLEL 167
L+ + L++ + G ++ + + + A L P+VY+ I K G+L+
Sbjct: 500 LELNACTYNSLINGLCKAGYLDQAMRTMADMDA--AGLKPDVYTYTTLIDALCKSGELDR 557
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID---KEGIRA 224
+ L+EM+ G T N + + GR++ + L++ ++ I
Sbjct: 558 AHDLLQEMLDNGIKPTIVTYNVLMNGF----------CMSGRVEGGKKLLEWMLEKNIHP 607
Query: 225 VSFTYLKERKFFMLGEFLRDV-----GLGRKDL--GNLLWNLLLLSYAGNFKMKSLQREF 277
+ TY K + +G ++ G+ +++ +N+L+ + MK Q
Sbjct: 608 NATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFH 667
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE--SVGPDLVTY 327
M E GF ++++ ++ F + M+ E + PD+ +
Sbjct: 668 NEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNF 719
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/293 (17%), Positives = 119/293 (40%), Gaps = 26/293 (8%)
Query: 76 LPDNSTLCAL-----MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
LPD + +C+ +LC A G V +A+ +++E+ S V++ +L + Y +G
Sbjct: 257 LPDKN-VCSYNILLKVLCGA--GRVEDARQLFDEMASPPDVVTYGIL---IHGYCALGEL 310
Query: 131 NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
+ ++D + R + VY+ ++ +G++ +++MV +D A
Sbjct: 311 ENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTV 370
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERKFFMLGEFLRDV 245
+ + G L + ++R D V++T L + + + L+++
Sbjct: 371 LSGFCNKGDLVSARRWFDEMQRKGLATD-----GVTYTTLINGLCRAGELKEAEKVLQEM 425
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
R D+ + + +L+ Y KM + M + G P++ T+ + +
Sbjct: 426 LARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDV 485
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVD-----AYLDKRLGRNLDFGLSKMNLD 353
+ L M ++ + + TY +++ YLD+ + D + + D
Sbjct: 486 QAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPD 538
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/321 (21%), Positives = 128/321 (39%), Gaps = 16/321 (4%)
Query: 29 GDLARKIIRYRKQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
GD A + R G V + LVE G+ ++ L++ + S G LPD ++
Sbjct: 263 GDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNV 322
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+ YA +G + EA V+ ++ ++ + S L++ +G+ G ++++ + ++ N
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG------ 198
D Y+ I FG+ G + + +MV D T I + G
Sbjct: 383 TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDAR 442
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
+ + TA + S+ I A L E + +VG + ++
Sbjct: 443 KILQYMTANDIVPSSKAYTGV--IEAFGQAALYEEALVAFNT-MHEVG---SNPSIETYH 496
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
LL S+A +K + R+ ++G + TFN + A+ + F + + M+
Sbjct: 497 SLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKS 556
Query: 319 SVGPDLVTYGCVVDAYLDKRL 339
PD T V+ Y RL
Sbjct: 557 RCDPDERTLEAVLSVYSFARL 577
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHM 315
+ L+ +Y N + ++ RM P + T+N A +R + W+ L L M
Sbjct: 179 YTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEM 238
Query: 316 KHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGK 370
+HE + PD+VTY ++ A + LG + MN P ++T ++ E FGK
Sbjct: 239 RHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGK 294
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/313 (18%), Positives = 115/313 (36%), Gaps = 36/313 (11%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
++ EG+ PD T L+ A G EA++V+ + V + S L++
Sbjct: 238 MRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVET------ 291
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
FGK +LE + + L EM S G D + N
Sbjct: 292 -----------------------------FGKLRRLEKVSDLLSEMASGGSLPDITSYNV 322
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
+ Y++ GS+ E + +++ + + + + + ++ + + ++
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
D +N+L+ + K + F M E PD+ T+ A + + D
Sbjct: 383 TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDAR 442
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN-LDDSPVVSTDPYVFEAF 368
L++M + P Y V++A+ L + M+ + +P + T + +F
Sbjct: 443 KILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSF 502
Query: 369 GKGDFHSSSEAFL 381
+G SEA L
Sbjct: 503 ARGGLVKESEAIL 515
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 110/280 (39%), Gaps = 36/280 (12%)
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
Q+ C+ + +Y+ IS G++G L+ EM S+G S + A I Y R
Sbjct: 134 QIWCKPNE---HIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGR-- 188
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF------------MLGEF--LRD 244
GR + S L+D+ +S + L +LG F +R
Sbjct: 189 --------NGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRH 240
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
G+ + D+ + +N LL + A + F M++ G PDLTT++ F ++
Sbjct: 241 EGI-QPDI--VTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPY 363
+ L M PD+ +Y +++AY + +M +P +T
Sbjct: 298 LEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSV 357
Query: 364 VFEAFGK-GDFHSSSEAFLEFKRQRK----WTYRKLIAVY 398
+ FG+ G + + FLE K TY LI V+
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVF 397
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 120/300 (40%), Gaps = 5/300 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS--DLMDAYGRIGCFN 131
G +PD + L+ + G +A + + V S V++ ++D + + G N
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 236
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ + ++ R Y+ + K ++ E L++MV++ ++ T N I
Sbjct: 237 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLI 296
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
YS G E + ++R L D + + + K K + + + ++
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 356
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+N++L YA + + F M G PD TFN+ A++ M +
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 416
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
M+ V PD+VTY V+ A R+G+ +D + K N V+ D Y + +G
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALC--RIGK-MDDAMEKFNQMIDQGVAPDKYAYNCLIQG 473
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 67/368 (18%), Positives = 148/368 (40%), Gaps = 17/368 (4%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+++ R+ V + L+ L + K A + +T+ +G PD + ++ YA
Sbjct: 313 KEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV- 151
G +++ +++ +L + L+ AY G ++ + I +++ R+ + P+V
Sbjct: 373 GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEM--RDHGVKPDVV 430
Query: 152 -YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y I+ + G+++ +M+ +G + D N I + GSL + + +
Sbjct: 431 TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 490
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFF---MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
+ +D ++ K + + + +VGL +++++L+ Y
Sbjct: 491 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD---AVVYSMLMDGYCLV 547
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVT 326
KM+ R F M AG P++ + + ++ D LSL M + P +
Sbjct: 548 GKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRI-DEGLSLFREMLQRGIKPSTIL 606
Query: 327 YGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSS--EAFLEFK 384
Y ++D + GR + + + +S ++ D + +G F + EA FK
Sbjct: 607 YSIIIDGLF--QAGRTVPAKVKFHEMTESG-IAMDICTYNIVLRGLFKNRCFDEAIFLFK 663
Query: 385 RQRKWTYR 392
R +
Sbjct: 664 ELRAMNVK 671
>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 833
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 129/306 (42%), Gaps = 41/306 (13%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
V C S + L + K A + +++ ++G P+ T L+ YA G ++ ++
Sbjct: 332 IVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFN 391
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGK 161
+ + V +V + ++DAYG+ G +E + I Q+ + ++P+ Y I+ F +
Sbjct: 392 SMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQM--QEQGVIPDACTYGIVIAAFSR 449
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
G+L + +M++ G + I+Y+ SL + +G L +++ L+ +
Sbjct: 450 MGRLADAMDKFNQMIAMGLKPEG------IVYH----SLIQGFCMHGNLVKAKELVSEMM 499
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
R G+ R ++ + +N ++ S ++ F +
Sbjct: 500 SR----------------------GIPRPNI--VFFNSIINSLCKEGRVVEAHDIFDFVI 535
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
G PD+ TFN + + L+ M + PD+V+Y ++D Y R GR
Sbjct: 536 HIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYC--RNGR 593
Query: 342 NLDFGL 347
+D GL
Sbjct: 594 -IDDGL 598
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 110/287 (38%), Gaps = 4/287 (1%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L ED ++ L H +V KS G P+ T ++ G V +A ++ E++
Sbjct: 199 TLCEDSRSQRALDLLHTMVK--KSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQ 256
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V V + ++DA + ++ ++ Q+ Y+ I + GQ +
Sbjct: 257 GVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKET 316
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+EM S+G + T N+++ + G E + + H + +
Sbjct: 317 AGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHG 376
Query: 229 YLKERKFF-MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y E F ML F G G ++N+++ +Y M F +M E G P
Sbjct: 377 YATEGCFVDMLNLFNSMEGNGIV-ADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIP 435
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D T+ I AFSRM D M + P+ + Y ++ +
Sbjct: 436 DACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGF 482
>gi|297736801|emb|CBI26002.3| unnamed protein product [Vitis vinifera]
Length = 469
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 125/302 (41%), Gaps = 20/302 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-SSFVL 112
LG+ +P AH+L +T+ EG P AL+ Y + + EA + ++ +
Sbjct: 154 LGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQP 213
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMEN 170
V S L+ A F + S+ +++ R+ + P ++ I S +GK G+ + ME
Sbjct: 214 DVFTYSTLLKACVDASRFELVESLYEEMDVRS--ITPNTVTQNIVLSGYGKAGKFDEMEK 271
Query: 171 TLKEMV-SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L M+ S D T N + + G + ME Y + + + + Y
Sbjct: 272 VLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGAY 331
Query: 230 LKER---KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K+R K + E++R + +N ++ +++ K+++ F +M G
Sbjct: 332 GKKRMYDKMSSVMEYMRKLQF---PWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMK 388
Query: 287 PDLTTFN--IRAVA----FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
D TF IR A F + ++ MK + PD TY +V+AY K+ G
Sbjct: 389 ADTKTFCCLIRGYANAGLFHKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAY--KKEG 446
Query: 341 RN 342
N
Sbjct: 447 MN 448
>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 108/249 (43%), Gaps = 4/249 (1%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++L++ L ++ + A+ L + GL+P++ T L+ NG V A +++++ +
Sbjct: 306 SALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFT 365
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+ + + L+D + G F E + +++ R L+P+ Y+ + K+G L
Sbjct: 366 KGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRG--LIPDKFTYTTLLDGSCKEGDL 423
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
EL KEMV G +D+ A I R G + + E + R+ D V
Sbjct: 424 ELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMV 483
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
+ K+ M + L+++ G + +N+L+ ++K+ M G
Sbjct: 484 MDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGV 543
Query: 286 HPDLTTFNI 294
PD T+NI
Sbjct: 544 VPDDITYNI 552
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/354 (21%), Positives = 135/354 (38%), Gaps = 46/354 (12%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
F C L+E + + P +A + + G P+ T LM G V +AQ++++
Sbjct: 197 FNGCKCLLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFD 256
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGK 161
E+ + + + L++ Y + G E + ++ + P+V YS I K
Sbjct: 257 EIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRL--KMVMEEFRVFPDVFTYSALIDGLCK 314
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFI--------------IYYSRF---------- 197
+ QLE + KEM RG + T I IY F
Sbjct: 315 ECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVL 374
Query: 198 -GSLTEMETAYGRLKRSRHLI---DKEGIRAVSFTY-------LKERKFFMLGEFLRDVG 246
+L + G + +R + K G+ FTY KE + E +++
Sbjct: 375 YNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMV 434
Query: 247 LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR---MS 303
L N+ + ++ + K+ +R M AG PD T+ + F + +
Sbjct: 435 KEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVK 494
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSP 356
M + L L+ M+ + P ++TY +++ + +N D L+ M NL P
Sbjct: 495 MGFKL---LKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVP 545
>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 485
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 122/313 (38%), Gaps = 54/313 (17%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SLV L + A +L+ + ++P+ T AL+ + G LEA+ +EE++
Sbjct: 214 SLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRR 273
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V + ++ G +E I+D + + P+V Y+ I+ F K +++
Sbjct: 274 CIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGC--FPDVVTYNTLINGFCKTKRVD 331
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
++EM RG VD+ T N I Y + GR ++ + + G R
Sbjct: 332 EGTKLVREMSQRGLVVDTVTFNTIIQGYFQ----------AGRPDAAQEIFSRMGSRPNI 381
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
TY ++LL N++++ F M ++
Sbjct: 382 RTY----------------------------SILLYGLCYNWRVEKALVLFESMQKSEME 413
Query: 287 PDLTTFNIRAVAFSRMSMF------WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
D+TT+NI M M WDL SL E PD+VTY ++ + KRL
Sbjct: 414 LDITTYNI---VIHGMCMIGNVEDAWDLFCSLSFKGLE---PDVVTYTTMISGFCRKRLW 467
Query: 341 RNLDFGLSKMNLD 353
DF KM D
Sbjct: 468 DKADFLYRKMQED 480
>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 690
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 11/183 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ LG+ K+ H L +K +G PD T L+ G V EA V+EEL SS
Sbjct: 486 TVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESS 545
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ + L++ G+ G +E + + + ++ L P+V YS I CFGK ++E
Sbjct: 546 DCKPDIISYNSLINCLGKNGDVDE--AHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVE 603
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ + M+++G + T N + R G E Y +L+ ++G+ S
Sbjct: 604 MARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLR-------EQGLTPDS 656
Query: 227 FTY 229
TY
Sbjct: 657 ITY 659
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/329 (18%), Positives = 137/329 (41%), Gaps = 14/329 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + ++ ++++ +K + PD T ++ G E+ ++EE+L+
Sbjct: 280 LLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKG 339
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
++ + ++ A + G ++ I + + N YS ++ +GQL ++
Sbjct: 340 CTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLD 399
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L+ VS F ++ + + S+ G +E + + D++ ++ +
Sbjct: 400 EVLE--VSNKF-INKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESL 456
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+ K E L V +++N +L + ++ L + +M + G PD+
Sbjct: 457 CRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDI 516
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T+NI + R+ + E ++ PD+++Y +++ LG+N D +
Sbjct: 517 FTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINC-----LGKNGDVDEAH 571
Query: 350 M---NLDD---SPVVSTDPYVFEAFGKGD 372
M + D +P V T + E FGK D
Sbjct: 572 MRFLEMQDKGLNPDVVTYSTLIECFGKTD 600
>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Glycine max]
Length = 632
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 130/310 (41%), Gaps = 13/310 (4%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+ +I Q +L+ L +K H +V+ V+ + + PD+ AL+ +A +
Sbjct: 96 QNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSIFFNALINAFAES 155
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--E 150
G + +A+ V +++ S S + L+ YG G +E + ++D +S ++ P +
Sbjct: 156 GNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTE-GNVKPNLK 214
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y+ I K + N + +M + G D T N Y++ G + E +
Sbjct: 215 TYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEM 274
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+R+ ++ + Y +E K + E LR V KDLG + NL++L+ N +
Sbjct: 275 QRNSLKPNERTCTIIISGYCREGK---VQEALRFV-YRMKDLG-MQPNLIVLNSLVNGFV 329
Query: 271 KSLQREFMR-----MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+ R+ + M E PD+ T++ A+S+ +M V PD
Sbjct: 330 DMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAH 389
Query: 326 TYGCVVDAYL 335
Y + Y+
Sbjct: 390 AYSILAKGYV 399
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/287 (18%), Positives = 116/287 (40%), Gaps = 4/287 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ L + + A +V + + G+ PD T + YA NG +A+ + E+ +S
Sbjct: 219 LIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNS 278
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLEL 167
+ + + ++ Y R G E + + ++ ++ + P V + ++ F +
Sbjct: 279 LKPNERTCTIIISGYCREGKVQEALRFVYRM--KDLGMQPNLIVLNSLVNGFVDMMDRDG 336
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
++ LK M D T + + +S+ G L + + Y + +S D ++
Sbjct: 337 VDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAK 396
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y++ ++ E L + +++ ++ + +M + R F +M E G P
Sbjct: 397 GYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFGVSP 456
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+L TF ++ W L+ M+ V P T V +A+
Sbjct: 457 NLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAW 503
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 120/300 (40%), Gaps = 5/300 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS--DLMDAYGRIGCFN 131
G +PD + L+ + G +A + + V S V++ ++D + + G N
Sbjct: 180 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 239
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ + ++ R Y+ + K ++ E L++MV++ ++ T N I
Sbjct: 240 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLI 299
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
YS G E + ++R L D + + + K K + + + ++
Sbjct: 300 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 359
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+N++L YA + + F M G PD TFN+ A++ M +
Sbjct: 360 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 419
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
M+ V PD+VTY V+ A R+G+ +D + K N V+ D Y + +G
Sbjct: 420 FNEMRDHGVKPDVVTYRTVIAALC--RIGK-MDDAMEKFNQMIDQGVAPDKYAYNCLIQG 476
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/356 (18%), Positives = 143/356 (40%), Gaps = 17/356 (4%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
V + L+ L + K A + +T+ +G PD + ++ YA G +++ +++
Sbjct: 328 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDL 387
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQ 162
+L + L+ AY G ++ + I +++ R+ + P+V Y I+ +
Sbjct: 388 MLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEM--RDHGVKPDVVTYRTVIAALCRI 445
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G+++ +M+ +G + D N I + GSL + + + + +D
Sbjct: 446 GKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFF 505
Query: 223 RAVSFTYLKERKFF---MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
++ K + + + +VGL +++N+L+ Y KM+ R F
Sbjct: 506 SSIINNLCKLGRVMDAQNIFDLTVNVGLHPD---AVVYNMLMDGYCLVGKMEKALRVFDA 562
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVVDAYLDKR 338
M AG P++ + + ++ D LSL M + P + Y ++D +
Sbjct: 563 MVSAGIEPNVVGYGTLVNGYCKIGRI-DEGLSLFREMLQRGIKPSTILYSIIIDGLFEA- 620
Query: 339 LGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSS--EAFLEFKRQRKWTYR 392
GR + + + +S ++ D + +G F + EA FK R +
Sbjct: 621 -GRTVPAKMKFHEMTESG-IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVK 674
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 120/300 (40%), Gaps = 5/300 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS--DLMDAYGRIGCFN 131
G +PD + L+ + G +A + + V S V++ ++D + + G N
Sbjct: 190 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 249
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ + ++ R Y+ + K ++ E L++MV++ ++ T N I
Sbjct: 250 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLI 309
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
YS G E + ++R L D + + + K K + + + ++
Sbjct: 310 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 369
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+N++L YA + + F M G PD TFN+ A++ M +
Sbjct: 370 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 429
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
M+ V PD+VTY V+ A R+G+ +D + K N V+ D Y + +G
Sbjct: 430 FNEMRDHGVKPDVVTYRTVIAALC--RIGK-MDDAMEKFNQMIDQGVAPDKYAYNCLIQG 486
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 66/356 (18%), Positives = 143/356 (40%), Gaps = 17/356 (4%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
V + L+ L + K A + +T+ +G PD + ++ YA G +++ +++
Sbjct: 338 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDL 397
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQ 162
+L + L+ AY G ++ + I +++ R+ + P+V Y I+ +
Sbjct: 398 MLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEM--RDHGVKPDVVTYRTVIAALCRI 455
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G+++ +M+ +G + D N I + GSL + + + + +D
Sbjct: 456 GKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFF 515
Query: 223 RAVSFTYLKERKFF---MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
++ K + + + +VGL +++++L+ Y KM+ R F
Sbjct: 516 SSIINNLCKLGRVMDAQNIFDLTVNVGLHPD---AVVYSMLMDGYCLVGKMEKALRVFDA 572
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVVDAYLDKR 338
M AG P++ + + ++ D LSL M + P + Y ++D +
Sbjct: 573 MVSAGIEPNVVVYCTLVNGYCKIGRI-DEGLSLFREMLQRGIKPSTILYSIIIDGLF--Q 629
Query: 339 LGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSS--EAFLEFKRQRKWTYR 392
GR + + + +S ++ D + +G F + EA FK R +
Sbjct: 630 AGRTVPAKMKFHEMTESG-IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVK 684
>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
Length = 674
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 104/247 (42%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++L+ R ++P A + +KSEG++PD T +++ Y G V EA ++E+L S
Sbjct: 182 STLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKS 241
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
++ L + + Y R G + II ++ ++ + + + + K G++
Sbjct: 242 VNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQ 301
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ EM + G S T + + Y+R G+ + Y LK D ++
Sbjct: 302 AKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMK 361
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
++ + + L+++ + +L + + +YA + +R F ++ P
Sbjct: 362 ACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKP 421
Query: 288 DLTTFNI 294
D F +
Sbjct: 422 DTPLFTV 428
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 6/189 (3%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+S I+C + Q E + M S G D T N+ I Y R G + E Y +L
Sbjct: 180 TFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKL 239
Query: 211 KRSRHLIDKEGIRAVSFTYLKE---RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
K +D A++ Y + + L + +RD G ++ N L+ + +
Sbjct: 240 KSVNWKLDTVTYGAIANVYARAGDYQSIIQLVQEMRDSG---SSPNAVIMNTLMGTLSKA 296
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
K+ ++ F M +G P T +I ++R+ + E +K E D+ Y
Sbjct: 297 GKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVY 356
Query: 328 GCVVDAYLD 336
++ A ++
Sbjct: 357 NSLMKACVE 365
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 11/169 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A QL N ++S G PD + +L+ +A G V + + +WEE++ F + ++
Sbjct: 380 AEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIH 439
Query: 123 AYGRIGCFNEIISIID--QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
YG+ G + + Q S RN D + Y+ I GK ++ + EM++ G
Sbjct: 440 MYGKQGQNELALQLYRDMQSSGRNPDAV--TYTVLIDSLGKTNKIAEAAGVMSEMLNTGV 497
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
T +A I Y++ G E E + + RS GIR Y
Sbjct: 498 KPTLKTYSALICGYAKAGKPVEAEETFDCMLRS-------GIRPDHLAY 539
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 124/285 (43%), Gaps = 9/285 (3%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTL-CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
P AH L++ +S+G+L +N +L ++ Y +A+ V L + +V +
Sbjct: 758 PETAHHLIDFAESDGILLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWN 817
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L++AY GC+ +I + + + + + G+L+ + ++E+
Sbjct: 818 ALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDM 877
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF--- 235
GF + ++ + ++R G++ E++ Y +K + + R ++ + ++
Sbjct: 878 GFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDV 937
Query: 236 -FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
ML E + + G + DL +WN +L Y + + + R+ E G PD T+N
Sbjct: 938 EAMLSE-MEEAGF-KPDLS--IWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNT 993
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
V + R + + M+ + P L TY +V ++ ++L
Sbjct: 994 LIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQL 1038
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 117/322 (36%), Gaps = 44/322 (13%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + NT+ +G P T+ L+ +G + E VV +EL F +S + ++D
Sbjct: 832 ARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLD 891
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
A+ R G E+ I + + A P +Y + Q+ +E L EM GF
Sbjct: 892 AFARAGNIFEVKKIYHGM--KAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGF 949
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FM 237
D + N+ + Y + Y R+K D++ + Y ++ + F
Sbjct: 950 KPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFS 1009
Query: 238 LGEFLRDVGLGRK--------------------------------DLGNLLWNLLLLSYA 265
L +R GL K L ++ ++ Y
Sbjct: 1010 LMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYR 1069
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+ +R F M +AG P + T ++ V++ + L ++K +
Sbjct: 1070 NSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTL 1129
Query: 326 TYGCVVDAYLDKRLGRNLDFGL 347
Y V+DAYL RN D+ +
Sbjct: 1130 PYSSVIDAYL-----RNGDYNI 1146
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/276 (17%), Positives = 104/276 (37%), Gaps = 35/276 (12%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
P+LA +L+N V+ GL PD T +
Sbjct: 307 PNLAIELLNEVRRSGLRPDTITY-----------------------------------NT 331
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L+ A R E + D + + Y+ IS +G+ G E ++ SRG
Sbjct: 332 LISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRG 391
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
F D+ + N+ + ++R G++ +++ + + + D+ + Y K+ + +
Sbjct: 392 FFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELAL 451
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+ RD+ ++ + + +L+ S K+ M G P L T++ +
Sbjct: 452 QLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGY 511
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
++ + + + M + PD + Y ++D +L
Sbjct: 512 AKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHL 547
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/262 (20%), Positives = 100/262 (38%), Gaps = 43/262 (16%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIID---QVSCR----------NA-------------D 146
+VQV + +M Y R G FN++ ++D + C+ NA +
Sbjct: 253 TVQVYNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIE 312
Query: 147 LLPEV-----------YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
LL EV Y+ IS + LE +M + D T NA I Y
Sbjct: 313 LLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYG 372
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE---RKFFMLGEFLRDVGLGRKDL 252
R G + E + L+ D ++ + + +E K + E + +G G+ +
Sbjct: 373 RCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDE- 431
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+ +N ++ Y + + + + M +G +PD T+ + + + + + +
Sbjct: 432 --MTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVM 489
Query: 313 EHMKHESVGPDLVTYGCVVDAY 334
M + V P L TY ++ Y
Sbjct: 490 SEMLNTGVKPTLKTYSALICGY 511
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 63/326 (19%), Positives = 124/326 (38%), Gaps = 10/326 (3%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS-VQVLSDLM 121
A Q+ + ++ G+ S +++L Y GF A + + S +L+ + + +++
Sbjct: 726 ASQVFSDMRFCGIKASESLYESMVLLYCKMGFPETAHHLIDFAESDGILLNNISLYVNVI 785
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
+AYGR+ + + S+ + R + +V++ I + G E M+ G S
Sbjct: 786 EAYGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMMRDGPS 845
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
T N + G L E+ L+ I K I + + + F
Sbjct: 846 PTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIFE---- 901
Query: 242 LRDVGLGRKDLGNL----LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
++ + G K G L+ ++ + +++ ++ M EAGF PDL+ +N
Sbjct: 902 VKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLK 961
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL-DKRLGRNLDFGLSKMNLDDSP 356
+ + F + +K + + PD TY ++ Y D R P
Sbjct: 962 MYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEP 1021
Query: 357 VVSTDPYVFEAFGKGDFHSSSEAFLE 382
+ T + +FGK +E E
Sbjct: 1022 KLDTYKSLVASFGKQQLVEQAEELFE 1047
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SLV G+++ A +L ++S+G D S +M Y N+G +A+ ++ + +
Sbjct: 1028 SLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDA 1087
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++ + LM +YG G E ++ + ++L YS I + + G +
Sbjct: 1088 GVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNIG 1147
Query: 169 ENTLKEMVSRGFSVDSATGNAFI 191
L +M G D FI
Sbjct: 1148 IQKLIQMKKEGLEPDHRIWTCFI 1170
>gi|77552391|gb|ABA95188.1| salt-inducible protein, putative [Oryza sativa Japonica Group]
Length = 938
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 119/286 (41%), Gaps = 4/286 (1%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A + L + KK A Q+ + G+ PD + ++ + G A V+ +E+
Sbjct: 346 AIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINR 405
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY--SRAISCFGKQGQL 165
+ + +MD + +E +++ + + ++ P+VY S I + K G L
Sbjct: 406 EKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSN--PDVYGYSYLIRSYCKMGNL 463
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ + MVS G + + + + + G +E + + K S +DK
Sbjct: 464 INAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIA 523
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
TY K + L ++ G + + L+ Y +M++ Q+ F M +A
Sbjct: 524 MDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANI 583
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
PD+ T+NI A F + + ++ L+ M + + P+ +TYG +
Sbjct: 584 EPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAI 629
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 127/304 (41%), Gaps = 35/304 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+N +K GL PD L+ Y G + AQ V+EE+L ++ + + L
Sbjct: 536 AVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILAS 595
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL---ELMENTLKE----- 174
+ + G E+ ++D+++ + + Y AI F + G L E++ N ++E
Sbjct: 596 GFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDH 655
Query: 175 -------MVSRGFSVDSATGNAFIIY--YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
MV G+ + T +A++++ +R G+L + + + + + +G V
Sbjct: 656 IEVMYSSMVC-GYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNV 714
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
K + + + DV + ++ L+ Y N M F M + G
Sbjct: 715 C-------KIMLEHDVVPDV---------ISYSKLISIYCQNGDMDKAHLWFHDMVQRGL 758
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345
D+ + I + + + M + + PD++ Y ++D +L + L + +
Sbjct: 759 SVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWE- 817
Query: 346 GLSK 349
G++K
Sbjct: 818 GIAK 821
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 107/263 (40%), Gaps = 24/263 (9%)
Query: 36 IRYRKQEGFVD---CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+R +Q VD C+ L+ DL R A + + ++PD + L+ Y N
Sbjct: 681 VRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQN 740
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G + +A + + +++ + V V + LM+ Y + G E + Q++ N + P+V
Sbjct: 741 GDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMT--NLGIKPDVI 798
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + L++ LKE + +G+ + +F++ + L+ M+
Sbjct: 799 AYTV----------LLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDV 848
Query: 213 SRHLIDKEGIRAVSFTYLKE-RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+ + +G YL E R+ F E L+ GL + L+ Y ++
Sbjct: 849 PCYTVLIDG--KCKAEYLVEARELF--DEMLQK-GLTPDAYA---YTALINGYCSQGEIS 900
Query: 272 SLQREFMRMSEAGFHPDLTTFNI 294
+ M + G PD TF++
Sbjct: 901 KAEDLLQEMIDKGIEPDELTFSV 923
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 98/278 (35%), Gaps = 12/278 (4%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
N +K L PD T + V EA VW E+ + S +
Sbjct: 331 NEMKCFQLTPDVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDC 390
Query: 128 GCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
G ++ I+ +++ + Y+ + K+ +L+ E L+ +G + D
Sbjct: 391 GKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGY 450
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL----- 242
+ I Y + G+L Y + H I+ VS+ RK M E +
Sbjct: 451 SYLIRSYCKMGNLINAVDHYEAM--VSHGIET-NCHIVSYLLQCFRKLGMTSEAIAYFLK 507
Query: 243 -RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+D GL L +++N+ + +Y N M + M G PD + +
Sbjct: 508 FKDSGL---HLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCL 564
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
+ E M ++ PD+VTY + + L
Sbjct: 565 KGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGL 602
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/289 (19%), Positives = 111/289 (38%), Gaps = 33/289 (11%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ L ++K A +L N + L PD+ TL L+ + G + A +++++
Sbjct: 450 TILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEK 509
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
L V + L+D +G++G + I + + P YS ++ +G L
Sbjct: 510 RIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEA 569
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
EM+S+ N+ I Y R G+ ++ E+ ++ + D + +
Sbjct: 570 FRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYG 629
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
+++E + GL +K M + G PD
Sbjct: 630 FVREENMS------KAFGLVKK---------------------------MEEEQGGLVPD 656
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
+ T+N F R + + + L M V PD TY C+++ ++ +
Sbjct: 657 VFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQ 705
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 124/308 (40%), Gaps = 17/308 (5%)
Query: 44 FVDCAS-------LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVL 96
F +C S L+ + +K AH+ ++S+G AL+ G+V
Sbjct: 158 FSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVE 217
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSR 154
A V++E+ S ++V L+ +++A + G ++ + + QV + + P++ Y+
Sbjct: 218 LAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQV--QEKGVYPDIVTYNT 275
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
IS + +G +E + M +GFS T N I + G + + + RS
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW---NLLLLSYAGNFKMK 271
D R++ K+ + D+ R + +L+ + L + +GN K
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDM-RSRDVVPDLVCFSSMMSLFTRSGNLD-K 393
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+L F + EAG PD + I + R M M + D+VTY ++
Sbjct: 394 ALMY-FNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTIL 452
Query: 332 DAYLDKRL 339
+++
Sbjct: 453 HGLCKRKM 460
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/288 (18%), Positives = 111/288 (38%), Gaps = 8/288 (2%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
N+VK GL+PDN L+ Y G + A + E+L + V + ++ +
Sbjct: 399 NSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKR 458
Query: 128 GCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQGQLELMENTLKEMVSRGFSVDSA 185
E + ++++ R L P+ Y+ I G K G L+ ++M + +D
Sbjct: 459 KMLGEADKLFNEMTER--ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVV 516
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T N + + + G + + + + S+ ++ ++ L + + D
Sbjct: 517 TYNTLLDGFGKVGDIDTAKEIWADMV-SKEILPTPISYSILVNALCSKGHLAEAFRVWDE 575
Query: 246 GLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ + ++ N ++ Y + + +M GF PD ++N F R
Sbjct: 576 MISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREEN 635
Query: 305 FWDLHLSLEHMKHESVG--PDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
++ M+ E G PD+ TY ++ + + + + L KM
Sbjct: 636 MSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM 683
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 67/354 (18%), Positives = 133/354 (37%), Gaps = 32/354 (9%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +L+ L R LA + + G+ + TL ++ +G + + ++
Sbjct: 203 CNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ 262
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + L+ AY G E +++ + + Y+ I+ K G+ E
Sbjct: 263 EKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYE 322
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ EM+ G S DS T + ++ + G + E E + + RSR ++ V
Sbjct: 323 RAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDM-RSRDVVPD----LVC 377
Query: 227 FTYLKE--------RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
F+ + K M +++ GL N+++ +L+ Y +
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD---NVIYTILIQGYCRKGMISVAMNLRN 434
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
M + G D+ T+N + M + M ++ PD T ++D + +
Sbjct: 435 EMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHC--K 492
Query: 339 LGRNLDFGLS--------KMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEF 383
LG NL + ++ LD V T + + FGK GD ++ E + +
Sbjct: 493 LG-NLQNAMELFQKMKEKRIRLD----VVTYNTLLDGFGKVGDIDTAKEIWADM 541
>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
Length = 773
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 18/265 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SLV+ + +L+ ++ EG PD + +L+ YA+ G V A V++++
Sbjct: 228 SLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRG 287
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V+ S L+ YG GCF ++ S+ + + Y+ I FG+ G +
Sbjct: 288 GCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQES 347
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV--- 225
N +MV G D AT +A + R G LT E A K +H++ E ++
Sbjct: 348 INLFHDMVDSGVKPDDATYSALLSVCGR-GGLTR-EAA----KIHQHMLTNESTPSLEAS 401
Query: 226 -----SFTYLKERKFFMLGEF-LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
S+ + K ++ + +R+ GL D ++ L+ YA
Sbjct: 402 AGLISSYGKMAMYKDALVSYYRIREAGL---DPQVSAYDALIQGYAKGGLYVEAGSTLYA 458
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSM 304
M++AGF +++ N A+S++ +
Sbjct: 459 MNKAGFQAPVSSVNSVMEAYSKVGL 483
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
G + L F +M G PDL T+N A S + + + M V D V
Sbjct: 165 GGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAV 224
Query: 326 TYGCVVDAYL-DKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFG-KGDFHSSSEAFLEF 383
TY +VD + +LGR + + +SP ++ + EA+ G+ H ++ F +
Sbjct: 225 TYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQM 284
Query: 384 KR----QRKWTYRKLIAVY 398
+R TY L+ +Y
Sbjct: 285 QRGGCAPDVETYSTLLRIY 303
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 7/190 (3%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+Y+ I G++G LE ++M + A I Y R G R+
Sbjct: 84 IYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARM 143
Query: 211 KRSR---HLIDKEGI-RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
K+ R +LI + A S L L +R G+ + DL + +N LL + +
Sbjct: 144 KKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGI-QPDL--ITYNTLLSACSS 200
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
++ F M+E+G D T+ F+ + + L M+ E PD+
Sbjct: 201 RGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAG 260
Query: 327 YGCVVDAYLD 336
Y +++AY D
Sbjct: 261 YNSLIEAYAD 270
>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 685
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 11/183 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ LG+ K+ H L +K +G PD T L+ G V EA V+EEL SS
Sbjct: 481 TVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESS 540
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ + L++ G+ G +E + + + ++ L P+V YS I CFGK ++E
Sbjct: 541 DCKPDIISYNSLINCLGKNGDVDE--AHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVE 598
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ + M+++G + T N + R G E Y +L+ ++G+ S
Sbjct: 599 MARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLR-------EQGLTPDS 651
Query: 227 FTY 229
TY
Sbjct: 652 ITY 654
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/329 (18%), Positives = 137/329 (41%), Gaps = 14/329 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + ++ ++++ +K + PD T ++ G E+ ++EE+L+
Sbjct: 275 LLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKG 334
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
++ + ++ A + G ++ I + + N YS ++ +GQL ++
Sbjct: 335 CTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLD 394
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L+ VS F ++ + + S+ G +E + + D++ ++ +
Sbjct: 395 EVLE--VSNKF-INKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISMLESL 451
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+ K E L V +++N +L + ++ L + +M + G PD+
Sbjct: 452 CRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDI 511
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T+NI + R+ + E ++ PD+++Y +++ LG+N D +
Sbjct: 512 FTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINC-----LGKNGDVDEAH 566
Query: 350 M---NLDD---SPVVSTDPYVFEAFGKGD 372
M + D +P V T + E FGK D
Sbjct: 567 MRFLEMQDKGLNPDVVTYSTLIECFGKTD 595
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 122/281 (43%), Gaps = 12/281 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L ++++ A +L+N +K G+ PD T L+ Y +G + +A ++ +
Sbjct: 374 TLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQ 433
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ + L+D R G + + D + R ++ P YS I ++GQ++
Sbjct: 434 RLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSR--EIFPNHVTYSILIDSHCEKGQVD 491
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L EMV++G + T N+ I Y R G++++ + +++ + + D +
Sbjct: 492 NAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLI 551
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
Y+KE K L+ + + +N+++ ++ + M+ + +M G
Sbjct: 552 HGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIE 611
Query: 287 PDLTTF----NIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
PD T+ N VA + F LH + M + + PD
Sbjct: 612 PDRYTYMSMINGHVVAGNSKKSF-QLH---DEMLQKGLAPD 648
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 107/295 (36%), Gaps = 9/295 (3%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
R PHL V S + TL ++ Y E V E+ V
Sbjct: 136 RAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVV 195
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
+ ++DA R G +++ID + + Y+ + + G+ + + M
Sbjct: 196 THNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAM 255
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
+ G + D + N I + R G L E Y ++ R D + + + +
Sbjct: 256 DACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEM 315
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA----GFHPDLTT 291
E+LR++ ++ G + ++ G F L E +R+ + G PD+ T
Sbjct: 316 DHAAEYLREM----REFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVT 371
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL-DKRLGRNLDF 345
+N + D L MK V PDL T+ ++ Y D + + L F
Sbjct: 372 YNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQF 426
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/347 (20%), Positives = 136/347 (39%), Gaps = 10/347 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L++++ S+G+ P T +++ NG +A+ V+ + + V+ + L+
Sbjct: 213 AMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIG 272
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ R G E + ++ R + P+V +S I F ++G+++ L+EM G
Sbjct: 273 GFCRAGELEEALRFYKEM--RGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGL 330
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
D I + R G + E + L D + KER+ E
Sbjct: 331 MPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEE 390
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L ++ + L+ Y + ++ + F +S+ PD+ T+N
Sbjct: 391 LLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMC 450
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPVVS 359
R + + M + P+ VTY ++D++ +K N L +M N P +
Sbjct: 451 RQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIM 510
Query: 360 TDPYVFEAFGKGDFHSSSEAFLEFKRQRK-----WTYRKLIAVYLKK 401
T + + + + S + FL R K TY LI Y+K+
Sbjct: 511 TYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKE 557
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 54/315 (17%), Positives = 125/315 (39%), Gaps = 8/315 (2%)
Query: 27 KNGDLARKIIRYRKQEG------FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
+ G+L + Y++ G V + L+ R+ + A + + ++ GL+PD
Sbjct: 276 RAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGV 335
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
++ + G +LEA V +E+++ + V + L++ + ++ +++++
Sbjct: 336 IYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEM 395
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R ++ I + + G +E + + D T N I R G L
Sbjct: 396 KERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDL 455
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNL 259
+ + + SR + ++ E+ D + + + N++ +N
Sbjct: 456 GKANELWDDM-HSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNS 514
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
++ Y + + Q+ +M PDL T+N + + + L+ M++E+
Sbjct: 515 IIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENEN 574
Query: 320 VGPDLVTYGCVVDAY 334
V PD VTY ++ +
Sbjct: 575 VQPDAVTYNMIISGF 589
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 130/340 (38%), Gaps = 57/340 (16%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLV--NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVV 101
V +SL+ R + HL LV +K GL+PDN LM Y NG +LEA +
Sbjct: 258 LVSFSSLIAVFSRNR--HLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKI 315
Query: 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY--------- 152
+E+L VL V + +++ + + + D++ R A LP+ Y
Sbjct: 316 RDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGA--LPDFYTFTTLIHGH 373
Query: 153 ------SRAISCFG----------------------KQGQLELMENTLKEMVSRGFSVDS 184
++A+S FG K G++E M+SR +
Sbjct: 374 CQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNH 433
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT-------YLKERKFFM 237
T I Y G ++E A+ R ++ ++GI+ T Y +
Sbjct: 434 ITYGILINAYCSVGHVSE---AF----RLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSK 486
Query: 238 LGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
EFL + ++ +N L+ + M +M + G PD+ T+N+
Sbjct: 487 ADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMN 546
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
F R + L L M + + PD TY +++ ++ +
Sbjct: 547 GFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQ 586
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/340 (19%), Positives = 134/340 (39%), Gaps = 14/340 (4%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C SL+ L + LA ++ V G+ + TL ++ +G + + E+
Sbjct: 86 CNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEME 145
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
+ + + L+ AY R G E I++ ++ + L P + Y+ I+ K+G+
Sbjct: 146 GNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMA--DKGLKPSLFTYNAIINGLCKKGR 203
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ L EM++ G S D+ T N ++ R + +E + +G + R + D +
Sbjct: 204 YARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSS 263
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLG----NLLWNLLLLSYAGNFKMKSLQREFMRM 280
+ + + R + RD+ K G N+++ +L+ Y N M + M
Sbjct: 264 LIAVFSRNRHLDQALVYFRDM----KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEM 319
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL-DKRL 339
E G D+ +N + M D + M PD T+ ++ + D +
Sbjct: 320 LEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNM 379
Query: 340 GRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSE 378
+ L + + P + + + F K G+ +SE
Sbjct: 380 TKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASE 419
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 117/279 (41%), Gaps = 12/279 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + +G++PD + +L+ ++ N + +A V + ++ V + + LM
Sbjct: 242 AKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMH 301
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y R G E + I D++ + L Y+ ++ K+ L + EMV RG
Sbjct: 302 GYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALP 361
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF- 241
D T I + + G++T+ + +G + + D V++ L + F +GE
Sbjct: 362 DFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPD-----IVAYNTLID-GFCKVGEME 415
Query: 242 ----LRDVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
L D + RK N + + +L+ +Y + R + M E G P L T N
Sbjct: 416 KASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVI 475
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ R L M + V PD ++Y +++ ++
Sbjct: 476 KGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFV 514
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
N+++ + + K ++ M G + D+ T+N A+ R + + + M
Sbjct: 122 NIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMAD 181
Query: 318 ESVGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPVVST-DPYVFEAFGKGDFHS 375
+ + P L TY +++ K R R + +N+ SP +T + + E+ + +F
Sbjct: 182 KGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSE 241
Query: 376 SSEAFLEFKRQRK----WTYRKLIAVYLKKQ 402
+ E F E RQ ++ LIAV+ + +
Sbjct: 242 AKEIFGEMLRQGVVPDLVSFSSLIAVFSRNR 272
>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
[Vitis vinifera]
gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 124/293 (42%), Gaps = 9/293 (3%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L+ L R+K+ L++ ++ GL PD+ A++ ++ +G V EA ++ ++
Sbjct: 110 TTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKD 169
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+ + L+ YG G E + ++D +S + ++ P ++ I + + ++
Sbjct: 170 RGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMS-QEENVKPNDRTFNSLIRAWCNKKRI 228
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
N + +M + G D T N Y++ G + E ++ +R + ++ +
Sbjct: 229 TEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGII 288
Query: 226 SFTYLKERKFFMLGEFL---RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
Y KE K FL R+ G+ +L +++N L+ + + M E
Sbjct: 289 INGYCKEGKMKDALRFLYRMRNYGV-HPNL--VIFNSLIKGFLDITDTDGVDEALTLMEE 345
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
G PD+ TF+ A+S + + + M + PD+ + + Y+
Sbjct: 346 FGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYV 398
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 59/312 (18%), Positives = 125/312 (40%), Gaps = 6/312 (1%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ KK+ A +V + + GL PD T L YA NG A+ + E+ ++
Sbjct: 217 SLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNN 276
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ + + +++ Y + G + + + ++ RN + P +++ I F +
Sbjct: 277 RVMPNERTCGIIINGYCKEGKMKDALRFLYRM--RNYGVHPNLVIFNSLIKGFLDITDTD 334
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
++ L M G D T + + +S G + + + + + ++ D ++
Sbjct: 335 GVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILA 394
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
Y++ + L +G +++ ++ + KM+ R + +M E G
Sbjct: 395 KGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGIC 454
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFG 346
P+L TF + L+ M+ + V P T V DA+ LG +
Sbjct: 455 PNLKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAPVKSTIQLVADAW--HALGLANEAK 512
Query: 347 LSKMNLDDSPVV 358
K +++++P V
Sbjct: 513 RIKNDVEEAPKV 524
>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Brachypodium distachyon]
Length = 637
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ K+ L + +K+ G+ PD T ++ Y G V +A ++EE+ +SS
Sbjct: 438 LGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPD 497
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
V + L++ G+ G +E + ++ + D P+V YS I CFGK ++++ +
Sbjct: 498 VITYNTLINCLGKNGDLDEAHILFKEMQEKGYD--PDVFTYSTLIECFGKSNKVDMACSL 555
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM++ G + T N + R G E Y +K ++G+ S TY
Sbjct: 556 FDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMK-------QQGLTPDSITY 606
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/332 (20%), Positives = 139/332 (41%), Gaps = 20/332 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + A+Q+ +K + +PD T L+ G + ++E++S
Sbjct: 227 LLDALAKAGMVDQAYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRG 286
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLEL 167
L++ + +++A G+ +++I ++ ++ +D P YS + +GQL
Sbjct: 287 CALNLIAYNTVIEALGKNKMVDKVIFVLSKMI--ESDCQPNQFTYSLTLDILATEGQLHR 344
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ L ++ R ++ + + + + G +E + R+ S D++ ++
Sbjct: 345 LNEVL-DICDR--YLNKSIYSYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLE 401
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMRMSEAGFH 286
K + L + D ++N++ S G K S + F +M +G
Sbjct: 402 VLCNSGKTLEAIDLLHMMPEKGIDTDIGMYNMVF-SALGKLKQVSFISTLFDKMKASGIA 460
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFG 346
PDL T+NI ++ R+ + E M+ S PD++TY +++ LG+N D
Sbjct: 461 PDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINC-----LGKNGDLD 515
Query: 347 LSKMNLDDSPVVSTDPYVF------EAFGKGD 372
+ + + DP VF E FGK +
Sbjct: 516 EAHILFKEMQEKGYDPDVFTYSTLIECFGKSN 547
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ GR A L +++ PD T L+ C NG + EA ++++E+
Sbjct: 469 MISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKG 528
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
+ V S L++ +G+ + S+ D++ +P + Y+ + C ++G+
Sbjct: 529 YDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGC--IPNIVTYNILLDCLERRGKTAE 586
Query: 168 MENTLKEMVSRGFSVDSAT 186
+ M +G + DS T
Sbjct: 587 AHKHYETMKQQGLTPDSIT 605
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 107/246 (43%), Gaps = 16/246 (6%)
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+ YS + GK+ ++ + LKEM + G + T I R G + E AY
Sbjct: 224 QTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINE---AYEI 280
Query: 210 LKRSRHLIDKEGI--RAVSFTYLKE-----RKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
LKR +D EG V++T L + RK E + GR + + LL
Sbjct: 281 LKR----MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
++ N + S+++ + M + G PD+ TF I A + F + +L+ M+ + + P
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILP 396
Query: 323 DLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAF 380
+L TY ++ L RL L+ + +L P T + +GK GD S+ E F
Sbjct: 397 NLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 456
Query: 381 LEFKRQ 386
+ K +
Sbjct: 457 EKMKTK 462
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 137/324 (42%), Gaps = 27/324 (8%)
Query: 32 ARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A +I++ EG V L++ L +K A ++ +K+ PD T L+
Sbjct: 277 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+++N + + W E+ V V + L+DA + G F E +D + R+ +
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVM--RDQGI 394
Query: 148 LPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG-SLTEME 204
LP + Y+ I + +L+ M S G + T FI YY + G S++ +E
Sbjct: 395 LPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE 454
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLK---ERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
T + ++K + A ++ K +R+ + L+D+GL ++ +N+++
Sbjct: 455 T-FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD---SVTYNMMM 510
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF---SRMSMFWDLHLSLEHMKHE 318
Y+ ++ + M E G PD+ N R+ W + + ++ MK
Sbjct: 511 KCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK-- 568
Query: 319 SVGPDLVTYGCVVDAYLDKRLGRN 342
+ P +VTY ++ LG+N
Sbjct: 569 -LKPTVVTYNTLLAG-----LGKN 586
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 25 HPKNGDLARKIIRYRKQE------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD 78
+ K+GD + + K + V C + + L + + A Q+ +K GL+PD
Sbjct: 443 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 502
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
+ T +M CY+ G + EA + E++ + V V++ L++ + +E +
Sbjct: 503 SVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFM 562
Query: 139 QVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
++ + L P V Y+ ++ GK G+++ + MV +G ++ T N
Sbjct: 563 RM--KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 107/273 (39%), Gaps = 37/273 (13%)
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
+A + VKS G +PD +T L+ Y +G + E +++E+ + + + +
Sbjct: 802 EIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIV 861
Query: 121 MDAYGRIGCFNEIISI-IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
+ + G ++ + + D +S R+ Y I K G+L + + M+ G
Sbjct: 862 ISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYG 921
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
+ A N I + FG E + A KR + KEG+R TY +L
Sbjct: 922 CRPNCAIYNILI---NGFGKAGEADAACALFKR----MVKEGVRPDLKTY------SVLV 968
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+ L V GR D G L Y F + E+G +PD+ +N+
Sbjct: 969 DCLCMV--GRVDEG--------LHY------------FKELKESGLNPDVVCYNLIINGL 1006
Query: 300 SRMSMFWDLHLSLEHMK-HESVGPDLVTYGCVV 331
+ + + MK + PDL TY ++
Sbjct: 1007 GKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI 1039
>gi|224086334|ref|XP_002307852.1| predicted protein [Populus trichocarpa]
gi|222853828|gb|EEE91375.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/273 (19%), Positives = 112/273 (41%), Gaps = 2/273 (0%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-LSSSFVLSVQVLSDLM 121
+L +KS G+ D ++ Y G + +A V E + V + + D++
Sbjct: 343 GEKLYMKLKSSGIGLDVIAFSIVIRMYVKAGSLKDACSVLETMEKEKDMVPDIYLFRDML 402
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
Y + G +++ + ++ E+Y+ I+C + + + EM+ RGF
Sbjct: 403 RVYQQCGMMDKLNDLYFKILKSGVVWDQELYNCLINCCARALPVGELSRLFNEMLQRGFD 462
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
++ T N + Y++ + + + R R L+D + Y ++R F +
Sbjct: 463 PNTITFNVMLDVYAKAKLFNKARELF-MMARKRGLVDVISYNTIIAAYGRKRDFKNMAST 521
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ + + +N +L +Y +M+S + RM + D T+NI +
Sbjct: 522 IHTMQFDGFSVSLEAYNCVLDAYGKEGQMESFRSVLQRMKNSSCTADHYTYNIMMNIYGE 581
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ ++ L ++ +GPDL +Y ++ AY
Sbjct: 582 LGWIDEVAGVLTELRECGLGPDLCSYNTLIKAY 614
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 114/272 (41%), Gaps = 26/272 (9%)
Query: 147 LLPEVYSRA---ISC-----FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
L+P+ R ISC + GQ E ++ S G +D + I Y + G
Sbjct: 314 LMPKSDDRPNLHISCTMIDIYTTMGQFNEGEKLYMKLKSSGIGLDVIAFSIVIRMYVKAG 373
Query: 199 SLTEMETAYGRLKRSRHLID-----KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
SL + + +++ + ++ ++ +R + ++ + + L+ + ++L
Sbjct: 374 SLKDACSVLETMEKEKDMVPDIYLFRDMLRVYQQCGMMDKLNDLYFKILKSGVVWDQELY 433
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
N L N A + L R F M + GF P+ TFN+ +++ +F + L
Sbjct: 434 NCLINCC----ARALPVGELSRLFNEMLQRGFDPNTITFNVMLDVYAKAKLF-NKARELF 488
Query: 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY--VFEAFGKG 371
M + D+++Y ++ AY KR +N+ + M D VS + Y V +A+GK
Sbjct: 489 MMARKRGLVDVISYNTIIAAYGRKRDFKNMASTIHTMQFDGFS-VSLEAYNCVLDAYGKE 547
Query: 372 DFHSSSEAFLEFKRQRK-----WTYRKLIAVY 398
S + L+ + +TY ++ +Y
Sbjct: 548 GQMESFRSVLQRMKNSSCTADHYTYNIMMNIY 579
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
Query: 175 MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234
M+ G + AT + Y + ++ E E ++ ++ RS +I + A+ Y +
Sbjct: 2 MLELGVQPNVATFGMVMGLYQKGWNVEEAEFSFAQM-RSFGIICQSAYSAMITIYTRLSL 60
Query: 235 FFMLGEFLRDVGLGRKD-----LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+ E +GL R D L N W +LL +Y+ K++ ++ + M EA F P +
Sbjct: 61 YDKAEEV---IGLMRDDKVVLNLEN--WLVLLNAYSQQGKLEKAEQLLVAMQEAKFSPTI 115
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+NI + + S +++ + PD TY +++ +
Sbjct: 116 VAYNILITGYGKASNMVAAQRLFSGIQNAGLEPDDTTYRSMIEGW 160
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 1/173 (0%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+ + + K +E E + +M S G SA +A I Y+R + E G +
Sbjct: 13 TFGMVMGLYQKGWNVEEAEFSFAQMRSFGIICQSAY-SAMITIYTRLSLYDKAEEVIGLM 71
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ + +++ E + Y ++ K + L + + + +N+L+ Y M
Sbjct: 72 RDDKVVLNLENWLVLLNAYSQQGKLEKAEQLLVAMQEAKFSPTIVAYNILITGYGKASNM 131
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+ QR F + AG PD TT+ + R+ + + + +K P+
Sbjct: 132 VAAQRLFSGIQNAGLEPDDTTYRSMIEGWGRVGNYKEAEWYYKELKRLGFKPN 184
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 136/325 (41%), Gaps = 38/325 (11%)
Query: 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSF 110
+ L R + A + + ++ G P+ T AL+ N G + +AQ ++E ++ + +
Sbjct: 57 ISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGY 116
Query: 111 VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELM 168
V + L+ + ++G +E + I D R +P+V Y+ I+ F K +L+
Sbjct: 117 SPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRG--FVPDVVTYNALINGFCKADKLDEA 174
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+ L+ MVS D T + SL GR+ +R LI +G T
Sbjct: 175 QRILQRMVSESLVPDVVT----------YNSLVNGLCKNGRVDEARMLIVDKGFSPNVIT 224
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL---LLSYAGNFKMKSLQRE--------- 276
Y L LR + R+ L ++ N ++SY N + L RE
Sbjct: 225 Y--STLISGLCRELRRLESARQLLEKMVLNGCKPDIVSY--NALIHGLAREQGVSEALKL 280
Query: 277 FMRMSEAGFHPDLTTFNIRAVAF---SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
F + G+ P++ T+NI R++ ++L L +KH + PD +TY +D
Sbjct: 281 FGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL--VKH-GLEPDAITYTVFIDG 337
Query: 334 YLDKRLGRNLDFGLSKMNLDDSPVV 358
+ GR D L ++D+ V
Sbjct: 338 LC--KAGRVEDALLMLKDMDEKGCV 360
>gi|222616383|gb|EEE52515.1| hypothetical protein OsJ_34721 [Oryza sativa Japonica Group]
Length = 820
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 119/286 (41%), Gaps = 4/286 (1%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A + L + KK A Q+ + G+ PD + ++ + G A V+ +E+
Sbjct: 228 AIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINR 287
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY--SRAISCFGKQGQL 165
+ + +MD + +E +++ + + ++ P+VY S I + K G L
Sbjct: 288 EKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSN--PDVYGYSYLIRSYCKMGNL 345
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ + MVS G + + + + + G +E + + K S +DK
Sbjct: 346 INAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIA 405
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
TY K + L ++ G + + L+ Y +M++ Q+ F M +A
Sbjct: 406 MDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANI 465
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
PD+ T+NI A F + + ++ L+ M + + P+ +TYG +
Sbjct: 466 EPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAI 511
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 127/304 (41%), Gaps = 35/304 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+N +K GL PD L+ Y G + AQ V+EE+L ++ + + L
Sbjct: 418 AVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILAS 477
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL---ELMENTLKE----- 174
+ + G E+ ++D+++ + + Y AI F + G L E++ N ++E
Sbjct: 478 GFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDH 537
Query: 175 -------MVSRGFSVDSATGNAFIIY--YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
MV G+ + T +A++++ +R G+L + + + + + +G V
Sbjct: 538 IEVMYSSMVC-GYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNV 596
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
K + + + DV + ++ L+ Y N M F M + G
Sbjct: 597 C-------KIMLEHDVVPDV---------ISYSKLISIYCQNGDMDKAHLWFHDMVQRGL 640
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345
D+ + I + + + M + + PD++ Y ++D +L + L + +
Sbjct: 641 SVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWE- 699
Query: 346 GLSK 349
G++K
Sbjct: 700 GIAK 703
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 107/263 (40%), Gaps = 24/263 (9%)
Query: 36 IRYRKQEGFVD---CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+R +Q VD C+ L+ DL R A + + ++PD + L+ Y N
Sbjct: 563 VRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQN 622
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G + +A + + +++ + V V + LM+ Y + G E + Q++ N + P+V
Sbjct: 623 GDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMT--NLGIKPDVI 680
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + L++ LKE + +G+ + +F++ + L+ M+
Sbjct: 681 AYTV----------LLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDV 730
Query: 213 SRHLIDKEGIRAVSFTYLKE-RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+ + +G YL E R+ F E L+ GL + L+ Y ++
Sbjct: 731 PCYTVLIDG--KCKAEYLVEARELF--DEMLQK-GLTPDAYA---YTALINGYCSQGEIS 782
Query: 272 SLQREFMRMSEAGFHPDLTTFNI 294
+ M + G PD TF++
Sbjct: 783 KAEDLLQEMIDKGIEPDELTFSV 805
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 98/278 (35%), Gaps = 12/278 (4%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
N +K L PD T + V EA VW E+ + S +
Sbjct: 213 NEMKCFQLTPDVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDC 272
Query: 128 GCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
G ++ I+ +++ + Y+ + K+ +L+ E L+ +G + D
Sbjct: 273 GKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGY 332
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL----- 242
+ I Y + G+L Y + H I+ VS+ RK M E +
Sbjct: 333 SYLIRSYCKMGNLINAVDHYEAM--VSHGIET-NCHIVSYLLQCFRKLGMTSEAIAYFLK 389
Query: 243 -RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+D GL L +++N+ + +Y N M + M G PD + +
Sbjct: 390 FKDSGL---HLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCL 446
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
+ E M ++ PD+VTY + + L
Sbjct: 447 KGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGL 484
>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Brachypodium distachyon]
Length = 787
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 135/361 (37%), Gaps = 45/361 (12%)
Query: 17 FNVPSHQTHPKNGDLARKIIRYRKQEGF------VDCASLVEDLGRKKKPHLAHQLVNTV 70
FN+ H TH G LA + +GF V +L+ RK A L+ +
Sbjct: 207 FNLLVH-THCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARM 265
Query: 71 KSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
K +G+ P T L+ YA G++ +A V E + ++ F + + L + G
Sbjct: 266 KKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKV 325
Query: 131 NEIISIIDQVSCRNADLLPEVYSR---AISCFG--------------------------- 160
+E + D++ R LLP+V + A +CF
Sbjct: 326 DEAFRLKDEME-RLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHN 384
Query: 161 -------KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
K G+LE L +M G + D T N I + + G++ + T + R
Sbjct: 385 IVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRR 444
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
+D + V + KE+++ L+ + + ++ +Y + +
Sbjct: 445 GLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPA 504
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
R + M E P ++T+N SRM + L + + + PD TY ++ A
Sbjct: 505 LRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHA 564
Query: 334 Y 334
Y
Sbjct: 565 Y 565
Score = 37.7 bits (86), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 70/165 (42%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ L R + A +N + +GL+PD++T ++ Y G + A +++ +
Sbjct: 525 TLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVEN 584
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
SF V + LM+ G ++ + + + + + Y+ I K G ++
Sbjct: 585 SFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTA 644
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
+ +M +RG D+ T N + S G E + +L S
Sbjct: 645 LHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAES 689
>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 117/296 (39%), Gaps = 12/296 (4%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR ++ +A ++ EG A+M YA +G +A+ + + +
Sbjct: 198 LGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPD 255
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
+ + L++A + GC +++ R + L P+V Y+ IS + LE
Sbjct: 256 LVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTV 315
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
+EM++ D T NA + + R G E E +G L + D ++ + + K
Sbjct: 316 FEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAK 375
Query: 232 E---RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
E K E L G + + + +N ++ Y ++ + M G PD
Sbjct: 376 EGNVDKVEHTCEELVKAGFKKNE---ITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPD 432
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
T+ + + +M + LE M + P LV + ++ AY + GR D
Sbjct: 433 AVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALICAY--AKGGRRAD 486
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 108/247 (43%), Gaps = 14/247 (5%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
+A L+ V+ GL PD T L+ + + + +A V+EE+++S + + ++
Sbjct: 276 VALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMV 335
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRG 179
+GR G E + ++ + +P+ Y+ + F K+G ++ +E+T +E+V G
Sbjct: 336 SVHGRCGKAEEAERLFGELVEKG--FMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAG 393
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERK 234
F + T N I Y + G L Y ++ D AV++T + K K
Sbjct: 394 FKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPD-----AVTYTVMIDSLGKMDK 448
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
G+ L D+ + ++ L+ +YA + ++ F M +G PD + +
Sbjct: 449 IAEAGKVLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLV 508
Query: 295 RAVAFSR 301
F+R
Sbjct: 509 MLDVFAR 515
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 122/287 (42%), Gaps = 28/287 (9%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE---ELLSSSFVLSVQVLSD 119
A QL++T+ G+ PD + L+ + +G L A V + E+ S V +
Sbjct: 240 ARQLLDTMHDRGIDPDLVSFNTLINARSKSG-CLAAGVALDLLFEVRQSGLRPDVITYNT 298
Query: 120 LMDAYGRIGCFNEIISIIDQV---SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMV 176
L+ A + + +++ +++ CR DL Y+ +S G+ G+ E E E+V
Sbjct: 299 LISACSQSSNLEDAVTVFEEMIASECR-PDLW--TYNAMVSVHGRCGKAEEAERLFGELV 355
Query: 177 SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF 236
+GF D+ T N+ + +++ G++ ++E L K G + TY
Sbjct: 356 EKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELV-------KAGFKKNEITY--NTMIH 406
Query: 237 MLGEFLR-DVGLGRKD--------LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
M G+ R D+ +G D + + +++ S K+ + M++AG P
Sbjct: 407 MYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKP 466
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
L F+ A+++ D + + M V PD + Y ++D +
Sbjct: 467 TLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVF 513
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 68/159 (42%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V GR K A +L + +G +PD T +L+ +A G V + + EEL+ +
Sbjct: 333 AMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKA 392
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F + + ++ YG++G + + + D++ Y+ I GK ++
Sbjct: 393 GFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEA 452
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
L++M G +A I Y++ G + E +
Sbjct: 453 GKVLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTF 491
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 128/299 (42%), Gaps = 28/299 (9%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTLCALML--CYANNGFVLEAQVVWEELLSSSFVLSVQVL 117
P AH L++ G+ P N C +++ Y N +A+++ + L +S + ++
Sbjct: 726 PETAHGLMDDALQSGI-PLNILSCRVIIIEAYGNIKLWQQAEILVKGLRQASGI-DRRIW 783
Query: 118 SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS-----RAISCFGKQGQLELMENTL 172
+ L+ AY G + + ++ D + LP V S RA+ G+ +L ++ L
Sbjct: 784 NALIHAYAESGLYEKARAVFDNMI--KTGPLPTVDSVNGMMRALIVDGRLDELYVVVGEL 841
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
++M F + +T + +++ G + E+ Y +K + +L + R+++
Sbjct: 842 QDM---DFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHH 898
Query: 233 RKF----FMLGEFLRDVGLG-RKDLGNLLWNLLLLSY--AGNFKMKSLQREFMRMSEAGF 285
+F M+ E G G + DL ++N LL Y AGNF + + + + EAG
Sbjct: 899 NRFRDVELMIAEM---EGAGFKPDLS--IFNSLLNMYTAAGNFDRTT--QVYQSILEAGL 951
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
PD T+N V + R + L M + P L +Y ++ A L D
Sbjct: 952 EPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQAD 1010
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 114/274 (41%), Gaps = 10/274 (3%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
QLV ++ +GL P+ T +++L +G V+E + V E++ + + L+D +
Sbjct: 166 QLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGF 225
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
++G + ++ R +++P+ +S I G++ + EM+ +GF
Sbjct: 226 CKLGNTQAAYKLFSEMEAR--EIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEP 283
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T A I Y + G + + + ++ + + A++ K + E L
Sbjct: 284 DEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELL 343
Query: 243 RDVGLGRKDLGNLLWNLLL--LSYAGN-FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
++ L +N ++ L AGN + L E M EAG HPD T+ A+
Sbjct: 344 HEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEE---MKEAGLHPDTITYTTLMDAY 400
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ L M + P +VT+ +++
Sbjct: 401 YKTGEMVKARELLREMLDRGLQPTVVTFNVLMNG 434
>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 426
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/315 (20%), Positives = 123/315 (39%), Gaps = 39/315 (12%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G+ K A L++ +K+ G++P+ ++ L+ Y N LEA V+ E+ +L +
Sbjct: 90 GKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDL 149
Query: 115 QVLSDLMDAYGRIG-----------------------------------CFNEIISIIDQ 139
+ ++D YG++G F E I +
Sbjct: 150 TTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRL 209
Query: 140 VSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199
+ +N + Y+ I +GK + E N ++EM SRG +S T + I + + G
Sbjct: 210 MQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGK 269
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
L + +L+ S ID+ + + Y + L + L R D N+ +
Sbjct: 270 LDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDT 325
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
+ AG +++ F + +AG D+T F S+ + ++ + M+
Sbjct: 326 AIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLG 385
Query: 320 VGPDLVTYGCVVDAY 334
PD V++AY
Sbjct: 386 YFPDSNVIAIVLNAY 400
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + ++ YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 212 RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 271
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 272 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 331
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 332 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYANVVEVFDKMRGLGY 386
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 387 FPDSNVIAIVLNAYGKLHEF 406
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLK S + D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|195616496|gb|ACG30078.1| PPR2 [Zea mays]
Length = 580
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/303 (19%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P T L++ +G A +++E+L + ++ + L+ AY R G +E + +
Sbjct: 224 PKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDEALQL 283
Query: 137 IDQVSCRNADLL-PEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
++ + +++ L P+VY S I + +L + K+M R S ++ T N +
Sbjct: 284 LNDM--KSSPLCQPDVYTYSTIIKACVDAARFDLTDAMYKDMAERSISPNTVTQNIVLSG 341
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
Y + G L +ME +L + L V + D+
Sbjct: 342 YGKAGRLDDMER-------------------------------VLSDMLDSVSC-KPDVW 369
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ N++L + +++ ++R + + G P+ T NI A+ + M+ + +E
Sbjct: 370 TM--NIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVME 427
Query: 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGK-G 371
HM+ + TY V++A+ + N++ ++M + P T + + F + G
Sbjct: 428 HMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDGFSRAG 487
Query: 372 DFH 374
FH
Sbjct: 488 QFH 490
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 121/323 (37%), Gaps = 47/323 (14%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR +P AHQL + + +G P AL+ Y +G + EA + ++ SS
Sbjct: 236 LGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDEALQLLNDMKSSPLCQP 295
Query: 114 -VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMEN 170
V S ++ A F+ ++ ++ R+ + P ++ I S +GK G+L+ ME
Sbjct: 296 DVYTYSTIIKACVDAARFDLTDAMYKDMAERS--ISPNTVTQNIVLSGYGKAGRLDDMER 353
Query: 171 TLKEMV-SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L +M+ S D T N + + G + ME Y + + + + + Y
Sbjct: 354 VLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAY 413
Query: 230 LKER---KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K R K + E +R + +N ++ ++A +++ F +M G
Sbjct: 414 GKRRMYDKMSAVMEHMRKLAF---PWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMR 470
Query: 287 PDLTTFNIRAVAFSRMSMFW-----------------------------------DLHLS 311
PD TF FSR F ++
Sbjct: 471 PDTKTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPANTPFHNAVLGACARADDLVEMERV 530
Query: 312 LEHMKHESVGPDLVTYGCVVDAY 334
MKH PD TY +V+AY
Sbjct: 531 FRRMKHTQCEPDASTYSILVEAY 553
>gi|168012907|ref|XP_001759143.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689842|gb|EDQ76212.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 122/305 (40%), Gaps = 38/305 (12%)
Query: 38 YRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY---ANNGF 94
Y +GF A L+ G+ + +A L N VK G PD+S AL+ Y + G
Sbjct: 110 YNHDDGFY--AKLIVISGKARDLRMAVWLFNEVKRSGSRPDSSLYNALITAYLHSRDKGR 167
Query: 95 VLEAQVVWEELLSSSFVLSVQVLS--DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV- 151
EA + E + +++ L+ A ++G ++ ++ A + P++
Sbjct: 168 GFEAAMKLFEKMKQKPKCQPNLVTYNILLRASAQLGDVVQVDRFFKEMEA--AKIYPDLV 225
Query: 152 -YSRAISCFGKQGQLELMENTLKEM-VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
Y+ I + + G ME TL M + + D+ T N I AYGR
Sbjct: 226 TYNGVIGAYAEAGDYVQMEMTLFVMRIQKHIKPDNVTSNTLI-------------GAYGR 272
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
+ + E + ++ LK M G + R DL +NLL+ SYA
Sbjct: 273 ---GKDFVKMEQVVSLFTAVLKS----MTGSKSKH----RPDLKT--YNLLMSSYARAQD 319
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
M+++ F RM EA F P+ +F I F + F + M S+ P T
Sbjct: 320 MENMLWSFSRMEEASFKPNFRSFEILMYGFGGVGDFEKMRECFHQMLEASIKPQTSTLNT 379
Query: 330 VVDAY 334
++ AY
Sbjct: 380 MISAY 384
>gi|410110139|gb|AFV61149.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
salviifolia]
Length = 378
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 131/334 (39%), Gaps = 43/334 (12%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V +++ G+ K A L++ +K+ G++P+ ++ L+ Y N
Sbjct: 15 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLSMYVENKKF 74
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--------------------------- 128
LEA V+ E+ +L + + ++D YG++G
Sbjct: 75 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 134
Query: 129 --------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
F E I + + +N + Y+ + +GK + E N ++EM SRG
Sbjct: 135 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGI 194
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+S T + I + + G L + +L+ S ID+ + + Y +
Sbjct: 195 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKR 254
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L + L R D N+ + + AG +++ F + +AG D+T F S
Sbjct: 255 LLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFERMIHLLS 310
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ + M+ PD V++AY
Sbjct: 311 KYKKYSNVXEVFDKMRGLGYFPDSDVIAIVLNAY 344
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 96 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 155
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 156 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 215
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 216 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 275
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + V G KD+ + LLS K ++ F +M G+
Sbjct: 276 GAGRIEEATYV---FRQAVDAGEVKDITVFERMIHLLSKYK--KYSNVXEVFDKMRGLGY 330
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 331 FPDSDVIAIVLNAYGKLQEF 350
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 11 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLSMYVE 70
Query: 337 KR 338
+
Sbjct: 71 NK 72
>gi|410110063|gb|AFV61111.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
barbata]
Length = 364
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 130/334 (38%), Gaps = 43/334 (12%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V +++ G+ K A L++ +K G++P+ ++ L+ Y N
Sbjct: 14 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTLLTMYVENKKF 73
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--------------------------- 128
LEA V+ E+ +L + + ++D YG++G
Sbjct: 74 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 133
Query: 129 --------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
F E I + + +N + Y+ + +GK + E N ++EM SRG
Sbjct: 134 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGI 193
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+S T + I + + G L + +L+ S ID+ + + Y +
Sbjct: 194 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKR 253
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L + L R D N+ + + AG +++ F + +AG D+T F S
Sbjct: 254 LLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLS 309
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ + M+ PD V++AY
Sbjct: 310 KYKKYSNVXEVFDKMRGLGYFPDSNVIAVVLNAY 343
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 95 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 154
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 155 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 214
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 215 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 274
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 275 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVXEVFDKMRGLGY 329
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD + A+ ++ F
Sbjct: 330 FPDSNVIAVVLNAYGKLXEF 349
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 10 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTLLTMYVE 69
Query: 337 KR 338
+
Sbjct: 70 NK 71
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 129/325 (39%), Gaps = 49/325 (15%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ L R+ + +++ + +PD T L+ Y N G +A V+ E++ +
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+V + L+++ + G N + +DQ+ R Y+ I F +QG L+
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK------------------ 211
+KEMV GF+ T NA I + G ME A G L+
Sbjct: 399 QIMKEMVENGFTPTIITYNALINGHCILG---RMEDASGLLQEMIERGFIPDVVSYSTII 455
Query: 212 ----RSRHL---------IDKEGIRAVSFTY-------LKERKFFMLGE----FLRDVGL 247
R++ L + +GI TY K+R+ LGE F + L
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRR---LGEVCDLFQEMLSL 512
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
G + + L+ +Y + R M + GF PD+ T+N+ F++ S +
Sbjct: 513 GLPP-DEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKE 571
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVD 332
L + +E P+ +TY ++D
Sbjct: 572 AKRLLLKLLYEESVPNEITYNTLID 596
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 100/237 (42%), Gaps = 6/237 (2%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS-RAI--SCFGKQGQLELME 169
S V ++ + R+ N+ +SI++ ++ +P V S AI + + +++ E
Sbjct: 131 SSAVFDLVVKSCARVNLINKALSIVNLA--KSYGFMPGVLSYNAILDAVIRTKQSVKIAE 188
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
KEMV G S + T N I + G+L +G ++R+ L + + Y
Sbjct: 189 GIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAY 248
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K RK + LR + L + + +N+++ +MK MS+ + PD
Sbjct: 249 CKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDR 308
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK-RLGRNLDF 345
TFN + + F + M + P++VTY ++++ L R ++F
Sbjct: 309 VTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 130/313 (41%), Gaps = 39/313 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++++ + +K A +L+ + +GL P+ + ++ G + E + EE+
Sbjct: 243 TIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKR 302
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+V + L++ Y +G F++ + ++ +N L P V Y+ I+ K G L
Sbjct: 303 RYVPDRVTFNTLINGYCNVGNFHQAL-VLHAEMVKNG-LSPNVVTYTTLINSMCKAGNLN 360
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L +M RG + T I +S+ G L + AY +K + + G
Sbjct: 361 RAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQ---AYQIMKE----MVENGFTPTI 413
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLL-------LLSY----AGNFKMKSLQ 274
TY + G + LGR +D LL ++ ++SY +G + + L+
Sbjct: 414 ITY----NALINGHCI----LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELE 465
Query: 275 REF---MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ F + M G PD+ T++ + ++ + M + PD VTY ++
Sbjct: 466 KAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLI 525
Query: 332 DAY-----LDKRL 339
+AY LDK L
Sbjct: 526 NAYCIEGDLDKAL 538
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 129/325 (39%), Gaps = 49/325 (15%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ L R+ + +++ + +PD T L+ Y N G +A V+ E++ +
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+V + L+++ + G N + +DQ+ R Y+ I F +QG L+
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK------------------ 211
+KEMV GF+ T NA I + G ME A G L+
Sbjct: 399 QIMKEMVENGFTPTIITYNALINGHCILG---RMEDASGLLQEMIERGFIPDVVSYSTII 455
Query: 212 ----RSRHL---------IDKEGIRAVSFTY-------LKERKFFMLGE----FLRDVGL 247
R++ L + +GI TY K+R+ LGE F + L
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRR---LGEVCDLFQEMLSL 512
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
G + + L+ +Y + R M + GF PD+ T+N+ F++ S +
Sbjct: 513 GLPP-DEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKE 571
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVD 332
L + +E P+ +TY ++D
Sbjct: 572 AKRLLLKLLYEESVPNEITYNTLID 596
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 100/237 (42%), Gaps = 6/237 (2%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS-RAI--SCFGKQGQLELME 169
S V ++ + R+ N+ +SI++ ++ +P V S AI + + +++ E
Sbjct: 131 SSAVFDLVVKSCARVNLINKALSIVNLA--KSYGFMPGVLSYNAILDAVIRTKQSVKIAE 188
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
KEMV G S + T N I + G+L +G ++R+ L + + Y
Sbjct: 189 GIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAY 248
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K RK + LR + L + + +N+++ +MK MS+ + PD
Sbjct: 249 CKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDR 308
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK-RLGRNLDF 345
TFN + + F + M + P++VTY ++++ L R ++F
Sbjct: 309 VTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 130/313 (41%), Gaps = 39/313 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++++ + +K A +L+ + +GL P+ + ++ G + E + EE+
Sbjct: 243 TIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKR 302
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+V + L++ Y +G F++ + ++ +N L P V Y+ I+ K G L
Sbjct: 303 RYVPDRVTFNTLINGYCNVGNFHQAL-VLHAEMVKNG-LSPNVVTYTTLINSMCKAGNLN 360
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L +M RG + T I +S+ G L + AY +K + + G
Sbjct: 361 RAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQ---AYQIMKE----MVENGFTPTI 413
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLL-------LLSY----AGNFKMKSLQ 274
TY + G + LGR +D LL ++ ++SY +G + + L+
Sbjct: 414 ITY----NALINGHCI----LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELE 465
Query: 275 REF---MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ F + M G PD+ T++ + ++ + M + PD VTY ++
Sbjct: 466 KAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLI 525
Query: 332 DAY-----LDKRL 339
+AY LDK L
Sbjct: 526 NAYCIEGDLDKAL 538
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 119/283 (42%), Gaps = 22/283 (7%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L + + L PD +T L+ GFVLE++ +++++L ++ + +
Sbjct: 279 ARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQ 338
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ G + + ++ VS L P+V Y+ I ++ ++ E L +MV+ GF
Sbjct: 339 GLCKEGSLDRAVRLLGCVS--REGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGF 396
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK--EGIRAVSFTYLK-ERKFFM 237
+ T N+ I Y + G + + +R L D +G + FTY F
Sbjct: 397 EPNDFTYNSIIDGYCKKGMVVDA---------NRILKDAVFKGFKPDEFTYCSLVNGFCQ 447
Query: 238 LGEFLRDVGLGRKDLGN------LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
G+ + + + + LG +++N L+ + + M+E G PD+ T
Sbjct: 448 DGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWT 507
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+N+ +M D + + + PD+ TY +VD Y
Sbjct: 508 YNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGY 550
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/362 (19%), Positives = 142/362 (39%), Gaps = 13/362 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ L RK + A + ++ + + G P++ T +++ Y G V++A + ++ +
Sbjct: 370 TVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFK 429
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F L++ + + G ++ +++ + VY+ I +QG +
Sbjct: 430 GFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPA 489
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+ EM +G D T N I + G L++ G + D +
Sbjct: 490 LQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDG 549
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y ++ K E + + + +N LL K + + F M+E G P+
Sbjct: 550 YCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPN 609
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY-----LDKRLGRNL 343
+ T+N + + L MK + + PD+V++G ++ + LD G L
Sbjct: 610 IITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYG--L 667
Query: 344 DFGLSKMNLDDSPVVSTDPYVFEAFGKG-DFHSSSEAFLEFKRQ----RKWTYRKLIAVY 398
G+ K D S +T + AF + + + F E K+ +TYR LI +
Sbjct: 668 FRGMEK-QYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGF 726
Query: 399 LK 400
K
Sbjct: 727 CK 728
>gi|357140210|ref|XP_003571663.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Brachypodium distachyon]
Length = 841
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/332 (20%), Positives = 133/332 (40%), Gaps = 15/332 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+LV ++ A ++ + + GL+P + T L++ N G + +AQ++ E ++
Sbjct: 426 ALVAAYSKEGFDEQALEVYSVMNKIGLVPSSPTFNYLIMGLCNQGRLDDAQLLLEHMICK 485
Query: 109 SFVLSVQVLSDLMDAYGRIG-------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
+ + + MD+Y R G C+++++ + Q D + +S IS +
Sbjct: 486 GYCVGTS-FTIYMDSYFRSGNVEGALKCWDDMVKVGVQ-----PDFI--AFSAYISGLCR 537
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ EM RGF ++ T N+ I + R G ++E ++++S + D
Sbjct: 538 LDHVNEAYQAFVEMTGRGFVPNNITYNSLISAFCRVGYVSEALKLEKKMRQSGLIPDVFT 597
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + KE + M+ + D+ + +N ++ +Y G M S +M
Sbjct: 598 SNILIDGFCKEGRLDMMNKRFLDMYNSGLTPDVVTYNTIINAYCGAQDMSSAMIFMNKML 657
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
G PD+ T+NI + + L+ + P+ VTY ++D L R
Sbjct: 658 ADGCEPDIFTYNIWMHSLCNNHLLNRAVKMLDELVAMGCMPNSVTYNTLMDGICSDVLDR 717
Query: 342 NLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDF 373
+ + + P T F F K F
Sbjct: 718 AMILTGKLIKMAFQPNTVTVNVFFSHFCKQGF 749
>gi|293330977|ref|NP_001169349.1| uncharacterized protein LOC100383216 [Zea mays]
gi|30961817|gb|AAP37977.1| PPR2 [Zea mays]
gi|224028857|gb|ACN33504.1| unknown [Zea mays]
gi|414883415|tpg|DAA59429.1| TPA: pentatricopeptide repeat 2 [Zea mays]
Length = 571
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/303 (19%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P T L++ +G A +++E+L + ++ + L+ AY R G +E + +
Sbjct: 215 PKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDEALQL 274
Query: 137 IDQVSCRNADLL-PEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
++ + +++ L P+VY S I + +L + K+M R S ++ T N +
Sbjct: 275 LNDM--KSSPLCQPDVYTYSTIIKACIDAARFDLTDAMYKDMAERSISPNTVTQNIVLSG 332
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
Y + G L +ME +L + L V + D+
Sbjct: 333 YGKAGRLDDMER-------------------------------VLSDMLDSVSC-KPDVW 360
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ N++L + +++ ++R + + G P+ T NI A+ + M+ + +E
Sbjct: 361 TM--NIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVME 418
Query: 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGK-G 371
HM+ + TY V++A+ + N++ ++M + P T + + F + G
Sbjct: 419 HMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDGFSRAG 478
Query: 372 DFH 374
FH
Sbjct: 479 QFH 481
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 121/323 (37%), Gaps = 47/323 (14%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR +P AHQL + + +G P AL+ Y +G + EA + ++ SS
Sbjct: 227 LGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDEALQLLNDMKSSPLCQP 286
Query: 114 -VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMEN 170
V S ++ A F+ ++ ++ R+ + P ++ I S +GK G+L+ ME
Sbjct: 287 DVYTYSTIIKACIDAARFDLTDAMYKDMAERS--ISPNTVTQNIVLSGYGKAGRLDDMER 344
Query: 171 TLKEMV-SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L +M+ S D T N + + G + ME Y + + + + + Y
Sbjct: 345 VLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAY 404
Query: 230 LKER---KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K R K + E +R + +N ++ ++A +++ F +M G
Sbjct: 405 GKRRMYDKMSAVMEHMRKLAF---PWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMR 461
Query: 287 PDLTTFNIRAVAFSRMSMFW-----------------------------------DLHLS 311
PD TF FSR F ++
Sbjct: 462 PDTKTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPVNTPFHNAVLGACARADDLVEMERV 521
Query: 312 LEHMKHESVGPDLVTYGCVVDAY 334
MKH PD TY +V+AY
Sbjct: 522 FRRMKHTQCEPDASTYSILVEAY 544
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/271 (18%), Positives = 112/271 (41%), Gaps = 4/271 (1%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
+++ +K +G++ + T L+ NG + + + +++E+ + V + L+
Sbjct: 259 VEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLIS 318
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
R G + D+++ + LLP Y I K G++ E + EM S+G
Sbjct: 319 WNCRKGNIKRAFLLFDELTEKG--LLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGV 376
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
++ N I Y R G + E Y +++ D ++ + + +++ +
Sbjct: 377 NITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQ 436
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
+L + G L + + L+ Y ++ +R F+ MS P+ T+N+ A+
Sbjct: 437 WLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYC 496
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ + +MK + PD TY ++
Sbjct: 497 KQGKVKEARKLWANMKANGMDPDSYTYTSLI 527
>gi|359490053|ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
chloroplastic-like [Vitis vinifera]
gi|297745081|emb|CBI38673.3| unnamed protein product [Vitis vinifera]
Length = 900
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 113/273 (41%), Gaps = 2/273 (0%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-LSSSFVLSVQVLSDLM 121
A L +KS + D ++ Y +G + +A V E + + V + + D++
Sbjct: 573 AENLYLKLKSSEISLDMIAFSIVVRMYVKSGSLKDACSVLETMDEQKNIVPDIYLFCDML 632
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
Y + G +++ + ++ E+Y+ I+C + ++ + EM+ GF+
Sbjct: 633 RIYQQCGMLDKLQDLYYRILKTGVTWDSEMYNCVINCCARALPVDELSRLFDEMLLHGFA 692
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
++ T N + Y + L + L R R L+D + Y + + +
Sbjct: 693 PNTITLNVMLDVYGK-SRLFKKARKVLWLARKRGLVDVISYNTIIAAYGQSKDLKKMLST 751
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+R + + ++N +L SY +++S + RM E+ D T+NI +
Sbjct: 752 VRQMQFNGFSVSLEVYNCMLDSYGKEGQIESFRSVLRRMKESSCASDHYTYNIMINIYGE 811
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ L +K +GPDL +Y ++ AY
Sbjct: 812 QGWIEEVANVLTELKESGLGPDLCSYNTLIKAY 844
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 106/261 (40%), Gaps = 38/261 (14%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ D+ ++ C A V E +++E+L F + L+ ++D YG+ F +
Sbjct: 655 GVTWDSEMYNCVINCCARALPVDELSRLFDEMLLHGFAPNTITLNVMLDVYGKSRLFKKA 714
Query: 134 ISIIDQVSCRN-ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
++ R D++ Y+ I+ +G+ L+ M +T+++M GFSV N +
Sbjct: 715 RKVLWLARKRGLVDVIS--YNTIIAAYGQSKDLKKMLSTVRQMQFNGFSVSLEVYNCMLD 772
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
Y + G + + R+K S D +TY
Sbjct: 773 SYGKEGQIESFRSVLRRMKESSCASDH-------YTY----------------------- 802
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
N+++ Y ++ + + E+G PDL ++N A+ M D + +
Sbjct: 803 -----NIMINIYGEQGWIEEVANVLTELKESGLGPDLCSYNTLIKAYGIAGMVEDAVVLV 857
Query: 313 EHMKHESVGPDLVTYGCVVDA 333
+ M+ + PD +TY +++A
Sbjct: 858 KEMRENGIQPDRITYINLINA 878
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 1/185 (0%)
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+VY+ I KQG +EL + M+ G + AT + Y + ++ + E A+ +
Sbjct: 209 QVYNTLIYACYKQGHVELGTKWFRLMLENGVRPNVATFGMVMSLYQKGWNVADSEYAFSQ 268
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
+ RS + + A+ Y + + E + + + L W +LL +Y+ K
Sbjct: 269 M-RSFGITCQSAYSAMITIYTRMSLYDKAEEVIDFIQEDKVILNLENWLVLLNAYSQQGK 327
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
++ +R M AGF P++ +N+ + + S ++K+ + PD TY
Sbjct: 328 LQEAERVLFSMQNAGFSPNIVAYNMLITGYGKASNMDAAQHIFRNLKNVGLEPDESTYRS 387
Query: 330 VVDAY 334
+++ +
Sbjct: 388 MIEGW 392
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 119/297 (40%), Gaps = 39/297 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEG-LLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L++ L + + LV ++S+ +P+ T L+ Y + A+ +++++
Sbjct: 385 TLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNK 444
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+V L+ L+D + G N + +++ + Y+ I F +E
Sbjct: 445 DGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEK 504
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
EM+ G S D+ I+YY+ L++ G+L R+ ++ K
Sbjct: 505 AMELFDEMLEAGCSPDA------IVYYTLISGLSQA----GKLDRASFVLSK-------- 546
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
+KE F D+ + +N+L+ + K+ M AG P
Sbjct: 547 --MKEAGF-------------SPDI--VSFNVLINGFCRKNKLDEAYEMLKEMENAGIKP 589
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
D T+N FS+ F H ++ M E + P +VTYG ++ AY L NLD
Sbjct: 590 DGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYC---LNGNLD 643
>gi|449458793|ref|XP_004147131.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
gi|449503522|ref|XP_004162044.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g19280-like [Cucumis sativus]
Length = 532
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 115/274 (41%), Gaps = 40/274 (14%)
Query: 80 STLCALMLCYANNGFVLE-AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
++LC + L +E A+V++E+++ V V + LMDAYG+ G ++ ++D
Sbjct: 279 NSLCKVSLLKEATALDVEMAEVMFEKMIVEGLKPDVVVYNILMDAYGKKGYMHKAFKLLD 338
Query: 139 QVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ R+ ++ P+V Y+ I+ +G L+ ++ L E++ RGFSVD T I YS
Sbjct: 339 MM--RSTNVTPDVVTYNTLINGLVMRGFLQEAKDILDELIRRGFSVDVVTYTNIIHGYST 396
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
G+ E + + + D A+ Y +E+ R D N L
Sbjct: 397 RGNFEEAFLLWYHMAENCVTPDVVTCSALLSGYCREK---------------RMDEANAL 441
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
F +M + G PDL +N F + + ++ M
Sbjct: 442 --------------------FCKMLDIGLKPDLILYNTLIHGFCSVGNVDEGCNLVKKMI 481
Query: 317 HESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
S+ P+ VT+ +V + KR+ + SK+
Sbjct: 482 ESSIIPNNVTHRALVLGFQKKRVTDPIQSATSKL 515
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 83/186 (44%), Gaps = 4/186 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ G+K H A +L++ ++S + PD T L+ GF+ EA+ + +EL+
Sbjct: 320 LMDAYGKKGYMHKAFKLLDMMRSTNVTPDVVTYNTLINGLVMRGFLQEAKDILDELIRRG 379
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS--CRNADLLPEVYSRAISCFGKQGQLEL 167
F + V ++++ Y G F E + ++ C D++ S +S + ++ +++
Sbjct: 380 FSVDVVTYTNIIHGYSTRGNFEEAFLLWYHMAENCVTPDVV--TCSALLSGYCREKRMDE 437
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+M+ G D N I + G++ E ++ S + + RA+
Sbjct: 438 ANALFCKMLDIGLKPDLILYNTLIHGFCSVGNVDEGCNLVKKMIESSIIPNNVTHRALVL 497
Query: 228 TYLKER 233
+ K+R
Sbjct: 498 GFQKKR 503
>gi|410110081|gb|AFV61120.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
camara]
Length = 381
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G+
Sbjct: 12 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVX 71
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 72 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 131
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ I +GK
Sbjct: 132 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGK 191
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 192 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 251
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 252 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 307
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 308 DAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVITVVLNAY 360
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 27 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVXPNTTSYSTLLTMYVE 86
Query: 337 KR 338
+
Sbjct: 87 NK 88
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 112 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 171
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + ++ YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 172 RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 231
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 232 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 291
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 292 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVVEVFDKMRGLGY 346
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD + A+ ++ F
Sbjct: 347 FPDSNVITVVLNAYGKLQEF 366
>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
Length = 822
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 102/432 (23%), Positives = 164/432 (37%), Gaps = 71/432 (16%)
Query: 37 RYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
R R+Q G C L++ L +++ A +L + + E DN + C L+
Sbjct: 158 RLREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLE 217
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV- 151
G V E + E + + V + L+D Y R G + ++ ++ + LP +
Sbjct: 218 GRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKG--FLPTLV 275
Query: 152 -YSRAISCFGKQGQLELMENTLKEMVSRGFSVD---------------SATGNAFIIYYS 195
Y I+C GK+G LE + + EM RG S + SAT A +I
Sbjct: 276 TYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSAT-QAMVILKQ 334
Query: 196 RFGSLTEMETAY-----------GRLKRSRHLIDKEGIR------AVSFTYLKERKFFML 238
F S + + G ++++ H + +E IR +S+T L F M
Sbjct: 335 MFASGCDPDIITFNTLITGLCHEGHVRKAEHFL-REAIRRELNPNQLSYTPLIH-GFCMR 392
Query: 239 GEFLRDVGL-----GRK------DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
GE + L GR G L+ L++ AG + RE +M+E P
Sbjct: 393 GELMAASDLLMEMMGRGHTPDVVTFGALIHGLVV---AGKVSEALIVRE--KMTERQVFP 447
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGL 347
D+ +N+ + M LE M ++V PD Y ++D ++ NL
Sbjct: 448 DVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRS---ENLGDAR 504
Query: 348 SKMNLDDSPVVSTDPYVFEAFGKG--DFHSSSEAFLEFKRQRK-------WTYRKLIAVY 398
+ V D A KG F SEA L RK +TY +I+ Y
Sbjct: 505 KIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGY 564
Query: 399 LKKQLRRNQIFW 410
K+ + W
Sbjct: 565 AKQGNLNGALRW 576
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 121/318 (38%), Gaps = 49/318 (15%)
Query: 27 KNGDLARKIIRYRKQE--GF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD-- 78
+ GD+ R ++ + E GF V SL+ LG+K L ++ GL P+
Sbjct: 251 RRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQ 310
Query: 79 --NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
NS + AL C++ +A V+ +++ +S + + L+ G +
Sbjct: 311 IYNSVIDALCKCWSAT----QAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHF 366
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ + R + Y+ I F +G+L + L EM+ RG + D T
Sbjct: 367 LREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVT---------- 416
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
FG+L G++ S LI +E + ER+ F DV +
Sbjct: 417 FGALIHGLVVAGKV--SEALIVREK--------MTERQVF------PDVNI--------- 451
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+N+L+ + + + M E PD + F R D E M+
Sbjct: 452 YNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFME 511
Query: 317 HESVGPDLVTYGCVVDAY 334
H+ V PD+V+ ++ Y
Sbjct: 512 HKGVRPDIVSCNAMIKGY 529
>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
microcephala]
Length = 440
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L+ +K+ G++
Sbjct: 58 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVM 117
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 118 PNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 177
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 178 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 237
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 238 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQIL 297
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 298 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 353
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 354 DAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAY 406
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 158 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 217
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 218 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 277
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 278 RAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 337
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 338 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVVEVFDKMRGLGY 392
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 393 FPDSDVIAIVLNAYGKLQEF 412
>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
herrerae]
Length = 433
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/353 (19%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 55 ELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVM 114
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N +EA V+ E+ +L + + ++D YG++G
Sbjct: 115 PNTASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 174
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 175 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 234
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 235 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVL 294
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L ++ K N+ + + AG +++ F +
Sbjct: 295 YQTMIVAYERAGLVAHAKRLLHEL----KSPDNIPRDTAIHILAGAGRIEEATYVFRQAI 350
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 351 DAGEVKDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAY 403
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 70 FSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVE 129
Query: 337 KR 338
+
Sbjct: 130 NK 131
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 4 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 63
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS + D A+ + K + F + ++ ++ L
Sbjct: 64 SKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTL 123
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 124 LTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 183
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 184 EPNVVSYNTLLRVYGDAEL 202
>gi|440804730|gb|ELR25603.1| pentatricopeptide repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 642
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/373 (21%), Positives = 136/373 (36%), Gaps = 91/373 (24%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ LG+ ++P AH L ++ GL PD+ AL+ G EA+ + +
Sbjct: 145 LLKVLGQARQPDNAHYLAE-IERRGLTPDSHCFSALITALGGAGRADEAERYFARMTQLG 203
Query: 110 FVLSVQVLSDLMDAYGRIG-------CFNEI--ISIIDQVSC------------RNAD-- 146
++ S L++A G G CF+ + + ++ C R A+
Sbjct: 204 LAPNLHCFSALINALGNAGRVDDAERCFDAMDQLGVVPDAHCFSTLIAALGTAGRVAEAE 263
Query: 147 ----------LLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
++P++ +S +S K G+++ ++ ++ SRG D NA I +
Sbjct: 264 RHFAKMEKLGVVPDLHCFSTLMSALTKAGKVDAAQHVFHQIASRGLKPDLVCFNALISGF 323
Query: 195 SRFGSLTEME------TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD---- 244
+ G E E T GRLK R + I+A +R +L E
Sbjct: 324 ADAGRADEAEHWFAKITTTGRLKPDR-ISYSALIQANEVVARPDRALALLQEMTHKVLTL 382
Query: 245 VGLGRKDLGNLLWNLLLLSYA---GNFKMKSLQREFMRMSEAGFHPDLTTF--------- 292
L D + + ++ A G M Q F M + G P+ TTF
Sbjct: 383 CLLLVCDQNVVSYTTVISCLAKARGRHHMDQAQEVFNEMVKQGVRPNATTFGALIHGHAL 442
Query: 293 ---------------------------NI-----RAVAFSRMSMFWDLHLSLEHMKHESV 320
NI + VA + + + +++HMK E V
Sbjct: 443 MGDLETARSRLKQMSTEFNLAPAAEIHNILMDAEKRVATDPVEAYHQVLRAVDHMKQEGV 502
Query: 321 GPDLVTYGCVVDA 333
PD T+ V+DA
Sbjct: 503 RPDHATFSIVIDA 515
>gi|410110109|gb|AFV61134.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
diamantinensis]
Length = 363
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/334 (20%), Positives = 131/334 (39%), Gaps = 43/334 (12%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V +++ G+ K A L++ +K+ G++P+ ++ L+ Y N
Sbjct: 13 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 72
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--------------------------- 128
LEA V+ E+ +L + + ++D YG++G
Sbjct: 73 LEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 132
Query: 129 --------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
F E I + + +N + Y+ + +GK + E N ++EM SRG
Sbjct: 133 LRVYGDAELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGI 192
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+S T + I + + G L + +L+ + ID+ + + Y +
Sbjct: 193 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVAYERAGLIAHAKR 252
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L + L R D N+ + + AG +++ F + +AG D+T F S
Sbjct: 253 LLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLS 308
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ + M+ PD V++AY
Sbjct: 309 KYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAY 342
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + E+ ++ +
Sbjct: 94 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGESIHLFRLMQ 153
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 154 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 213
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 214 RAAMLFQKLRSTGVEIDQILFQTMIVAYERAGLIAHAKRLLHELKRPDNIPRDTAIHILA 273
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 274 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYANVVEVFDKMRGLGY 328
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD + A+ ++ F
Sbjct: 329 FPDSNVIAVVLNAYGKLQEF 348
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 9 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 68
Query: 337 KR 338
+
Sbjct: 69 NK 70
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 141/323 (43%), Gaps = 22/323 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTV-KSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
L++ R+ K A +++ + +SEG++ D L+ Y + +A + +E+L+
Sbjct: 294 LIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNV 353
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLE 166
+++ + + L++ Y + G +E ++ ++ + DL PE YS + + F ++G +
Sbjct: 354 GLRMNLFICNALINGYCKNGQVSEAERLLMRMV--DWDLEPESYSYSTLMDGFCREGLVT 411
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA-- 224
+ EM+ G + T N+ + R G+ + + HL+ K G+
Sbjct: 412 KAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVW-------HLMLKRGVTPDE 464
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLG------NLLWNLLLLSYAGNFKMKSLQREFM 278
VS+ L + F +GEF R + L L +N ++ + KM + F
Sbjct: 465 VSYCTLLDL-LFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFN 523
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
RM E GF PD T+ + ++ + E M+ E++ P + Y ++ +
Sbjct: 524 RMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSK 583
Query: 339 LGRNLDFGLSKMNLDD-SPVVST 360
R + LS+M L SP V T
Sbjct: 584 KTREVMDLLSEMCLKGLSPNVVT 606
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 13/273 (4%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G +P + L+ G A +V++ + V V S +++AY + G N
Sbjct: 178 GCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVA 237
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ + ++ +L Y+ I G +E E LK M RG + T I
Sbjct: 238 VDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKG 297
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT-YLKERKF---FMLGEFLRDVGLGR 249
Y R L E E ++RS ++ E V Y + K L + + +VGL R
Sbjct: 298 YCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGL-R 356
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+L + N L+ Y N ++ +R MRM + P+ +++ F R +
Sbjct: 357 MNL--FICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAI 414
Query: 310 LSLEHMKHESVGPDLVTYG------CVVDAYLD 336
M + ++VT+ C V A+ D
Sbjct: 415 SVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFED 447
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 61/319 (19%), Positives = 123/319 (38%), Gaps = 72/319 (22%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ L + KK L++ + +GL P+ T L+ + + G + +A + +++
Sbjct: 574 SLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEK 633
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV------------------------SCRN 144
F +V + S ++ + R+G +E ++ ++ S +
Sbjct: 634 GFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKI 693
Query: 145 ADLLPE-----------VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
AD L E VY+ AI+ K G+++ + ++ RGFS D+ T I
Sbjct: 694 ADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHG 753
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
YS G++ + +F+ LRD L R
Sbjct: 754 YSAAGNVND-----------------------AFS-------------LRDEMLKRGLAP 777
Query: 254 NLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
N++ +N L+ + + Q+ F ++ G P++ ++NI + + +
Sbjct: 778 NIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLR 837
Query: 313 EHMKHESVGPDLVTYGCVV 331
M E + P L+TY ++
Sbjct: 838 NKMLKEGISPSLITYSALI 856
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 57/304 (18%), Positives = 115/304 (37%), Gaps = 35/304 (11%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +L+ + + A +L+ + L P++ + LM + G V +A V+ E+L
Sbjct: 362 CNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEML 421
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISI----------IDQVS-CRNADLLPEV---- 151
+V + L+ R+G F + + + D+VS C DLL ++
Sbjct: 422 RVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFF 481
Query: 152 -------------YSRA-------ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
Y R+ I+ F K ++ E T M GF D T I
Sbjct: 482 RALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLI 541
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
Y + G++ E ++++ L E ++ K +K + + L ++ L
Sbjct: 542 DGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLS 601
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ + L+ + ++ + M E GF P++ + + R+ + ++
Sbjct: 602 PNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANML 661
Query: 312 LEHM 315
L+ M
Sbjct: 662 LQKM 665
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 50/290 (17%), Positives = 118/290 (40%), Gaps = 10/290 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ + +K A + N +K G PD T L+ Y G V EA V E++
Sbjct: 504 TMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKE 563
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ + S+++ + L+ + E++ ++ ++ + L P V Y I+ + +G+L+
Sbjct: 564 AILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKG--LSPNVVTYGTLIAGWCDEGRLD 621
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIR 223
+M+ +GF+ + + + R G + E ++ +D + +
Sbjct: 622 KAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLH 681
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
L +K + + L + ++++N+ + + K+ ++ F +
Sbjct: 682 KADDGNLDSQK---IADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLR 738
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
GF PD T+ +S D + M + P+++TY +++
Sbjct: 739 GFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALING 788
>gi|410110079|gb|AFV61119.1| pentatricopeptide repeat-containing protein 123, partial [Junellia
succulentifolia]
Length = 382
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 139/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 13 ELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVT 72
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 73 PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 132
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 133 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 192
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 193 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 252
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 253 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 308
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 309 DAGXVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAY 361
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F D + M+ V P+ +Y ++ Y++
Sbjct: 28 FSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVTPNTASYSTLLTMYVE 87
Query: 337 KR 338
+
Sbjct: 88 NK 89
>gi|410110059|gb|AFV61109.1| pentatricopeptide repeat-containing protein 123, partial
[Acantholippia salsoloides]
Length = 433
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 135/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V + + G+ K A L++ ++ G++
Sbjct: 55 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVM 114
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ EL +L + + ++D YG++G
Sbjct: 115 PNTASYSTLLTMYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKL 174
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 175 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 234
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM RG +S T + I + + G L + +L+ S ID+
Sbjct: 235 TLEHEKANNLIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 294
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L ++ K N+ + + AG +++ F R
Sbjct: 295 FQTMIVAYERAGLVAHAKRLLHEL----KSPDNIPRDTAIHILAGAGRIEEATYVFRRAI 350
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 351 DAGEVKDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAY 403
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/285 (19%), Positives = 115/285 (40%), Gaps = 15/285 (5%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 155 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 214
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 215 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQGRGIEPNSITYSTIISIWGKVGKLD 274
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LK ++ I ++
Sbjct: 275 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILA 334
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F R + G KD+ ++ ++ ++ K ++ F +M G+
Sbjct: 335 GAGRIEEATYV---FRRAIDAGEVKDI--TVFERMIHLFSKYKKYANVVEVFDKMRGLGY 389
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
PD + A+ + LH E K SV ++ GCV
Sbjct: 390 FPDSNVIALVLNAYGK------LH---EFDKANSVYMEMQEVGCV 425
>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 426
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 139/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERVGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSXVIALVLNAY 400
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|218191262|gb|EEC73689.1| hypothetical protein OsI_08260 [Oryza sativa Indica Group]
Length = 595
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 2/185 (1%)
Query: 149 PEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+VY S I + K G L + + MVS G + + + + + G +E+
Sbjct: 33 PDVYGYSYLIQSYCKMGNLIKAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEVIAY 92
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
+ + K S +DK TY K + L ++ G + + L+ Y
Sbjct: 93 FLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCL 152
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+M++ Q+ F M +A PD+ T+NI A F + + ++ L+ M + + P+ +T
Sbjct: 153 KGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLT 212
Query: 327 YGCVV 331
YG +
Sbjct: 213 YGIAI 217
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 126/304 (41%), Gaps = 35/304 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+N +K GL PD L+ Y G + AQ V+EE+L ++ + + L
Sbjct: 124 AVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILAS 183
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL---ELMENTLKE----- 174
+ + G E+ ++D+++ + + Y AI F + G L E++ N ++E
Sbjct: 184 GFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDH 243
Query: 175 -------MVSRGFSVDSATGNAFIIY--YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
MV G+ + T +A++++ +R G+L + + + + + +G V
Sbjct: 244 IEVMYSSMVC-GYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNV 302
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
K + + DV + ++ L+ Y N M F M + G
Sbjct: 303 C-------KIMLEHNVVPDV---------ISYSKLISIYCQNGDMDKAHLWFHDMVQRGL 346
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345
D+ + I + + + M + + PD++ Y ++D +L + L + +
Sbjct: 347 SIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWE- 405
Query: 346 GLSK 349
G++K
Sbjct: 406 GIAK 409
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 111/273 (40%), Gaps = 24/273 (8%)
Query: 36 IRYRKQEGFVD---CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+R +Q VD C+ L+ DL R A + + ++PD + L+ Y N
Sbjct: 269 VRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQN 328
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G + +A + + +++ + V V + LM+ Y + G E + Q++ N + P+V
Sbjct: 329 GDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMT--NLGIKPDVI 386
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + L++ LKE + +G+ + +F++ + L+ M+
Sbjct: 387 AYTV----------LLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDV 436
Query: 213 SRHLIDKEGIRAVSFTYLKE-RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+ + +G YL E R+ F E L+ GL + L+ Y ++
Sbjct: 437 PCYTVLIDG--KCKAEYLVEARELF--DEMLQK-GLTPDAYA---YTALINGYCSQGEIS 488
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ M + G PD TF+ +A +S+
Sbjct: 489 KAEDLLQEMIDKGIEPDELTFSEVNIADEELSV 521
>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 130/325 (40%), Gaps = 43/325 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW-EELLSS 108
+++ L R ++ L+ Q+ + + G+ PDN T L+ C AN +A + W + + +
Sbjct: 49 MLKVLRRGQQWELSQQIAEDMINAGIRPDNITYSTLISC-ANRCNYQDAAMAWFDRMHDA 107
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV---------------------------- 140
V S ++D YG++G ++E +++ + V
Sbjct: 108 QCVPDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAA 167
Query: 141 -----SCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ + + P VY+ ISC G+ G++ +EM G ++ T + +
Sbjct: 168 VSIFDEMKGSGIQPGSVVYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEI 227
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE-FLRD-VGLGRKD 251
YSR G + E + +++ L + +E E +LR+ V G +
Sbjct: 228 YSRSGKVMEGLGIFHHMRQD--LACDIIVYNAVIKMCREAGLVPEAEQYLREMVEYGHQP 285
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
N++ L YA N QR F ++ EAG+ PD+ ++ + + +
Sbjct: 286 NDWTYRNMISL-YAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQEI 344
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLD 336
L M + PD + CV+ LD
Sbjct: 345 LHEMVSANCAPDERLW-CVILNLLD 368
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 18/258 (6%)
Query: 19 VPSHQTHPKNGDLARKIIRYR---------KQEGF----VDCASLVEDLGRKKKPHLAHQ 65
VP T+ D+ K+ +Y K+ G+ V ++V GR A
Sbjct: 110 VPDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVS 169
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
+ + +K G+ P + ++ C G + A V++E+ + + LS +M+ Y
Sbjct: 170 IFDEMKGSGIQPGSVVYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYS 229
Query: 126 RIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
R G E + I + DL + VY+ I + G + E L+EMV G +
Sbjct: 230 RSGKVMEGLGIFHHM---RQDLACDIIVYNAVIKMCREAGLVPEAEQYLREMVEYGHQPN 286
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
T I Y++ G E + + +L + + D ++ Y + + + E L
Sbjct: 287 DWTYRNMISLYAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQEILH 346
Query: 244 DVGLGRKDLGNLLWNLLL 261
++ LW ++L
Sbjct: 347 EMVSANCAPDERLWCVIL 364
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 96/268 (35%), Gaps = 50/268 (18%)
Query: 144 NADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
NA + P+ YS ISC + + M D+ T + I Y + G
Sbjct: 71 NAGIRPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYD 130
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV--------GLGRKDLG 253
E Y +K+S DK TY + F ++ G G + G
Sbjct: 131 EAVALYESVKKSGWKPDK-------VTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQP-G 182
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
++++N+++ +M + F M +AG P+ T + +SR + L +
Sbjct: 183 SVVYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVME-GLGIF 241
Query: 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDF 373
H + + D++ Y V+ KM + V + Y+ E
Sbjct: 242 HHMRQDLACDIIVYNAVI-----------------KMCREAGLVPEAEQYLRE------- 277
Query: 374 HSSSEAFLEFKRQ-RKWTYRKLIAVYLK 400
+E+ Q WTYR +I++Y K
Sbjct: 278 ------MVEYGHQPNDWTYRNMISLYAK 299
>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
Length = 1013
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 115/286 (40%), Gaps = 35/286 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+LV R + A +++ +K G+ P+ +T ++ Y V EA ++E ++ +
Sbjct: 209 TLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRN 268
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+L V LS L+ R G F+E ++ ++ A Y I K G+ + +
Sbjct: 269 GVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKEL 328
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+ L EMVSRG +D T A + + + G E+ K+ +R
Sbjct: 329 LSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEV---------------KDTLR----- 368
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
F L + L G + + +L+ + + ++ + M E P+
Sbjct: 369 -------FALSDNLSPNG--------VTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPN 413
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ TF+ F + + MK + P++VTYG ++D +
Sbjct: 414 VVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGF 459
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 103/256 (40%), Gaps = 1/256 (0%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
D T+ L+ NG V +A + L V + L+ Y R+G +S+
Sbjct: 134 DGVTVNTLLAGLCRNGQV-DAAAALADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVA 192
Query: 138 DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
D+++ + + Y+ ++ F + GQ++ L M G + AT FI+YY R
Sbjct: 193 DRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRT 252
Query: 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW 257
+ E Y + R+ L+D + A+ ++ +F R++ ++ +
Sbjct: 253 KGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTY 312
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
L+ S A + K L M G DL T+ + ++ +L
Sbjct: 313 CTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALS 372
Query: 318 ESVGPDLVTYGCVVDA 333
+++ P+ VTY ++DA
Sbjct: 373 DNLSPNGVTYTVLIDA 388
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 69/332 (20%), Positives = 136/332 (40%), Gaps = 52/332 (15%)
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE- 150
NG + EA ++++ S L + L+D + G ++ RN +LP+
Sbjct: 497 NGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRN--MLPDA 554
Query: 151 -VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS-------LTE 202
VY+ I+C G+ + ++ L EM + G D +T N I+ + R G L E
Sbjct: 555 VVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHE 614
Query: 203 META------------------YGRLKRSRHLIDKEGIRAVSFTYLKERKFFM------- 237
M+ + G ++++++L+++ S + L R+
Sbjct: 615 MKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRR 674
Query: 238 ------LGEFLRDVGLGRKDLGNLLWNLLL--LSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+ E++ + GL D+ ++N LL L Y G + ++ E M +G PD
Sbjct: 675 LDVILDIHEWMMNAGL-HADI--TVYNTLLQVLCYHGMTRKATVVLE--EMLGSGIAPDT 729
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
TFN + + S + + M H+++ P++ T+ ++ + +GR + G
Sbjct: 730 ITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGL--ESVGRIGEAGTVL 787
Query: 350 MNLDDSPVVSTD-PYVFEAFGKGDFHSSSEAF 380
+ ++ S + + Y A G G + EA
Sbjct: 788 IEMEKSGLEPNNLTYDILATGHGKQSNKVEAM 819
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 109/283 (38%), Gaps = 4/283 (1%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RK + A +L++ +K + P+ T L+ G V +A+ + E++S+ F S
Sbjct: 601 RKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSL 660
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLK 173
++ A + + I+ I + + NA L + VY+ + G L+
Sbjct: 661 THRRVLQACSQSRRLDVILDIHEWM--MNAGLHADITVYNTLLQVLCYHGMTRKATVVLE 718
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
EM+ G + D+ T NA I+ + + L Y ++ + +
Sbjct: 719 EMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVG 778
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+ G L ++ + NL +++L + R + M GF P ++T+N
Sbjct: 779 RIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYN 838
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F++ M + M+ V P TY +V + D
Sbjct: 839 ALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWYD 881
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 1/187 (0%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL ++R V ++LV L R + A+ L + G P++ T C L+
Sbjct: 260 DLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSL 319
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
A G E + E++S V+ + + LMD G+ G +E+ + N
Sbjct: 320 AKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNG 379
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
Y+ I K ++ E L EM + S + T ++ I + + G L + T Y R
Sbjct: 380 VTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG-LLDKATEYKR 438
Query: 210 LKRSRHL 216
+ + R +
Sbjct: 439 MMKERGI 445
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 100/243 (41%), Gaps = 3/243 (1%)
Query: 147 LLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
++PE+ YS + FGK G+LE + LKEM S G+ D ++ N I +++ GS+ E
Sbjct: 285 IVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAM 344
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ +++ + + + + Y K ++ + E + + +N+L+ +
Sbjct: 345 DVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVF 404
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
K + F + + P++ T+ A + + D L HM + + P
Sbjct: 405 GEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSS 464
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKMN-LDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEF 383
Y +++AY L + MN + + T + F +G + EA L
Sbjct: 465 KAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSR 524
Query: 384 KRQ 386
R+
Sbjct: 525 MRE 527
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 109/272 (40%), Gaps = 20/272 (7%)
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
Q+ C+ + +Y+ IS G++G LE EM S+G + A I Y R G
Sbjct: 141 QIWCKPNE---HIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNG 197
Query: 199 SLTEMETAYGRLKRSRH----LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
R+KR R L I A + L L +R G+ + DL
Sbjct: 198 QYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGV-QPDL-- 254
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ +N LL + A + F M E G P++TT++ F ++ + + L+
Sbjct: 255 VTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKE 314
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLG---RNLDFGLSKMNLDDSPVVSTDPYVFEAFGK- 370
M+ E PD+ +Y +++A+ +LG +D P ST + +GK
Sbjct: 315 MESEGYLPDISSYNVLIEAH--AKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKH 372
Query: 371 GDFHSSSEAFLEFKRQR----KWTYRKLIAVY 398
G + E FL+ K TY LI V+
Sbjct: 373 GRYDDVRELFLQMKESSAEPDATTYNILIRVF 404
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 29 GDLARKIIRYRKQEGFVDCAS----LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
GD A + + + G V + +VE G+ K L+ ++SEG LPD S+
Sbjct: 270 GDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNV 329
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+ +A G + EA V++++ ++ V + S L++ YG+ G ++++ + Q+ +
Sbjct: 330 LIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESS 389
Query: 145 ADLLPEVYSRAISCFGKQG 163
A+ Y+ I FG+ G
Sbjct: 390 AEPDATTYNILIRVFGEGG 408
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/286 (17%), Positives = 112/286 (39%), Gaps = 28/286 (9%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + T+ G++P+ +T ++ + G + + ++ +E+ S ++ + + L++
Sbjct: 273 AEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIE 332
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A+ ++G E + + Q+ YS ++ +GK G+ + + +M
Sbjct: 333 AHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEP 392
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ T N I + G E+ T + H + E I TY E F G+
Sbjct: 393 DATTYNILIRVFGEGGYFKEVVTLF-------HDLVDENIDPNMETY--EGLVFACGK-- 441
Query: 243 RDVGLGRKDLGNLLWNL--------------LLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
G +D +L+++ L+ +Y F M+E G
Sbjct: 442 ---GGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKST 498
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ T+N F+R ++ + L M+ + + ++ +++ Y
Sbjct: 499 IDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGY 544
>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
Length = 660
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 121/300 (40%), Gaps = 45/300 (15%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ L + + A L+ ++S+ P +T L+ Y +G + A ++ E+ ++
Sbjct: 233 TLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENA 292
Query: 109 SF---VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
V+++ L D M + RI E ++ Q + ++ Y+ I+ F +
Sbjct: 293 QIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNV---TYTVFINAFCNVNNM 349
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
L EM G D+ ++YY+ L + GRL + ++ K
Sbjct: 350 NKAMEFLDEMSKDGCFPDA------VVYYTLICGLAQ----AGRLDDASSVVSK------ 393
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
LKE F L + +N+L+ + K+ Q M AG
Sbjct: 394 ----LKEAGFC---------------LDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGV 434
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHM-KHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
PD T+N FS++ F H ++ M + E + P + TYG ++ AY L N+D
Sbjct: 435 KPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYC---LNNNID 491
>gi|410110129|gb|AFV61144.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
pusilla]
Length = 381
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 13 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 72
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 73 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 132
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 133 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 192
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ + ID+
Sbjct: 193 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQIL 252
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 253 FQTMIVXYERAGLIAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 308
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 309 DAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAY 361
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 113 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 172
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 173 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 232
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 233 RAAMLFQKLRSTGVEIDQILFQTMIVXYERAGLIAHAKRLLHELKRPDNIPRDTAIHILA 292
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 293 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYANVVEVFDKMRGLGY 347
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD + A+ ++ F
Sbjct: 348 FPDSNVIAVVLNAYGKLQEF 367
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 28 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 87
Query: 337 KR 338
+
Sbjct: 88 NK 89
>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
Length = 521
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 42/301 (13%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G+ +P A L +++ P+ T ALM +A G EA+ +++L +
Sbjct: 220 GKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDH 279
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLELMENTL 172
+ LM+AY + G + I Q RN P+ S I+ +G+ G E E
Sbjct: 280 YAYNALMEAYSQGGSPAGALEIF-QTMQRNG-CFPDTVSHNILINAYGRAGLYEDAEKIF 337
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
K M S GFS + + + Y+R G + E E ++R D
Sbjct: 338 KSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPD-------------- 383
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK---MKSLQREFMRMSEAGFHPDL 289
L++N L+ +Y + + M++L + ++ S PD+
Sbjct: 384 ---------------------TLIYNALINAYGVSGRHEDMEALLAKMVKSSSKQTKPDI 422
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T+N +++ + + + PD T+ ++ Y K+L R L K
Sbjct: 423 GTYNTLIQVYAQAGFIPKAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKK 482
Query: 350 M 350
M
Sbjct: 483 M 483
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 105/265 (39%), Gaps = 9/265 (3%)
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+ Y+R I +GK G+ E + M + T A + ++R G E E + +
Sbjct: 210 DTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDK 269
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
L+ + D A+ Y + E + + + N+L+ +Y
Sbjct: 270 LQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGL 329
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ ++ F M AGF P+L + + A++R + + M+ + PD + Y
Sbjct: 330 YEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNA 389
Query: 330 VVDAYLDKRLGRNLDFGLSKMNLDDS----PVVSTDPYVFEAFGKGDFHSSSEAFLEFKR 385
+++AY +++ L+KM S P + T + + + + F +E +
Sbjct: 390 LINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLA 449
Query: 386 QRKW-----TYRKLIAVYLKKQLRR 405
+ K T+ L+ Y KK+L R
Sbjct: 450 RLKLVPDATTWTALMGGYAKKKLYR 474
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 100/243 (41%), Gaps = 3/243 (1%)
Query: 147 LLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
++PE+ YS + FGK G+LE + LKEM S G+ D ++ N I +++ GS+ E
Sbjct: 285 IVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAM 344
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ +++ + + + + Y K ++ + E + + +N+L+ +
Sbjct: 345 DVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVF 404
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
K + F + + P++ T+ A + + D L HM + + P
Sbjct: 405 GEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSS 464
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKMN-LDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEF 383
Y +++AY L + MN + + T + F +G + EA L
Sbjct: 465 KAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSR 524
Query: 384 KRQ 386
R+
Sbjct: 525 MRE 527
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 109/272 (40%), Gaps = 20/272 (7%)
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
Q+ C+ + +Y+ IS G++G LE EM S+G + A I Y R G
Sbjct: 141 QIWCKPNE---HIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNG 197
Query: 199 SLTEMETAYGRLKRSRH----LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
R+KR R L I A + L L +R G+ + DL
Sbjct: 198 QYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGV-QPDL-- 254
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ +N LL + A + F M E G P++TT++ F ++ + + L+
Sbjct: 255 VTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKE 314
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLG---RNLDFGLSKMNLDDSPVVSTDPYVFEAFGK- 370
M+ E PD+ +Y +++A+ +LG +D P ST + +GK
Sbjct: 315 MESEGYLPDISSYNVLIEAH--AKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKH 372
Query: 371 GDFHSSSEAFLEFKRQR----KWTYRKLIAVY 398
G + E FL+ K TY LI V+
Sbjct: 373 GRYDDVRELFLQMKESSAEPDATTYNILIRVF 404
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 29 GDLARKIIRYRKQEGFVDCAS----LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
GD A + + + G V + +VE G+ K L+ ++SEG LPD S+
Sbjct: 270 GDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNV 329
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+ +A G + EA V++++ ++ V + S L++ YG+ G ++++ + Q+ +
Sbjct: 330 LIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESS 389
Query: 145 ADLLPEVYSRAISCFGKQG 163
A+ Y+ I FG+ G
Sbjct: 390 AEPDATTYNILIRVFGEGG 408
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/286 (17%), Positives = 112/286 (39%), Gaps = 28/286 (9%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + T+ G++P+ +T ++ + G + + ++ +E+ S ++ + + L++
Sbjct: 273 AEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIE 332
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A+ ++G E + + Q+ YS ++ +GK G+ + + +M
Sbjct: 333 AHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEP 392
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ T N I + G E+ T + H + E I TY E F G+
Sbjct: 393 DATTYNILIRVFGEGGYFKEVVTLF-------HDLVDENIDPNMETY--EGLVFACGK-- 441
Query: 243 RDVGLGRKDLGNLLWNL--------------LLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
G +D +L+++ L+ +Y F M+E G
Sbjct: 442 ---GGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKST 498
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ T+N F+R ++ + L M+ + + ++ +++ Y
Sbjct: 499 IDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGY 544
>gi|255661176|gb|ACU25757.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 426
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G K A L++ +++ G++
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVM 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAY 400
>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 426
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 139/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAY 400
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 822
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/285 (20%), Positives = 116/285 (40%), Gaps = 7/285 (2%)
Query: 53 DLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVL 112
D+G+ ++ +L++ G +P+ ++ Y G + A V+EEL F+
Sbjct: 217 DVGKVEE---GRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLP 273
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
+++ L+D + + G F + ++++++ ++ +V++ I K G ++ +
Sbjct: 274 TLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMM 333
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
+ M G D T N I + G + E E R K L +K + Y K+
Sbjct: 334 RMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQ 393
Query: 233 RKFFMLGEFLRDVGL--GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
+ M + L + + DL + + G + + RE +M E G PD
Sbjct: 394 GDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVRE--KMMEKGVFPDAQ 451
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+N+ + F L L M ++ PD Y +VD ++
Sbjct: 452 IYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFI 496
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 125/295 (42%), Gaps = 15/295 (5%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
V C +LV+ L + KP A + + L+P++ T AL+ Y G + + + +
Sbjct: 343 LVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQ 402
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--K 161
E+ +V S +++ Y + G +E I+++ ++ +N ++P Y AI G K
Sbjct: 403 EMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQN--IIPNAYVYAILIDGYCK 460
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
G+ E+ + EM G V++ + + R + E E + L+D
Sbjct: 461 AGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVN 520
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL--LSYAGNFKMKSLQREFMR 279
++ + K K + ++ + +N+L+ L G ++ KS+ +
Sbjct: 521 YTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYEAKSV---YSG 577
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE---HMKHESVGPDLVTYGCVV 331
M E G P+ T+NI A+ + +L +LE MK + P +T +V
Sbjct: 578 MIEMGLAPNQATYNIMIKAYCKQG---ELDNALELWNEMKSHKIMPSSITCNTLV 629
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 125/311 (40%), Gaps = 24/311 (7%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L N +KS ++P + T L++ + G + +A V E+ ++ + L++
Sbjct: 606 ALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLN 665
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A + G N ++ + +Q+ + E Y+ I F + + + LK M+ GF
Sbjct: 666 ASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVA 725
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY------------L 230
D+ T NA I Y + + Y ++ EG+ TY +
Sbjct: 726 DTVTYNALIRGYCESSHVKKALATYTQMLN-------EGVSPNIVTYNLLLGGLLGAGLM 778
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
ER L + +++ GL D ++ L+ Y K R + M GF P +
Sbjct: 779 AERD--ELFDKMKENGL-NPDAST--YDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTS 833
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
T+N+ F+++ L M+ V P TY ++ + + +LD L K+
Sbjct: 834 TYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPDLDRTLKKI 893
Query: 351 NLDDSPVVSTD 361
D+ + T+
Sbjct: 894 YRTDAKNLITE 904
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 152/348 (43%), Gaps = 15/348 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+S+V L + + A +L+ +K G+ P++ L+ G EA +L+
Sbjct: 277 SSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVV 336
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
L + + + L+D + E + +S N L+P Y+ I + K G +
Sbjct: 337 RGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLN--LIPNSITYTALIDGYCKVGDM 394
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR--SRHLIDKEGIR 223
E +E+ L+EM + + + T ++ I Y++ G L E A +K+ +++I +
Sbjct: 395 ERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDE---AINVMKKMLDQNIIPNAYVY 451
Query: 224 AVSFT-YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
A+ Y K K + + ++ L + N+L+++L+ + +M + ++
Sbjct: 452 AILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTS 511
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD--KRLG 340
G D + F + +E M +S+ D+VTY +++ L+ K
Sbjct: 512 RGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYEA 571
Query: 341 RNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKRQR 387
+++ G+ +M L +P +T + +A+ K G+ ++ E + E K +
Sbjct: 572 KSVYSGMIEMGL--APNQATYNIMIKAYCKQGELDNALELWNEMKSHK 617
>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
Length = 933
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 115/286 (40%), Gaps = 35/286 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+LV R + A +++ +K G+ P+ +T ++ Y V EA ++E ++ +
Sbjct: 209 TLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRN 268
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+L V LS L+ R G F+E ++ ++ A Y I K G+ + +
Sbjct: 269 GVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKEL 328
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+ L EMVSRG +D T A + + + G E+ K+ +R
Sbjct: 329 LSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEV---------------KDTLR----- 368
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
F L + L G + + +L+ + + ++ + M E P+
Sbjct: 369 -------FALSDNLSPNG--------VTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPN 413
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ TF+ F + + MK + P++VTYG ++D +
Sbjct: 414 VVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGF 459
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 65/318 (20%), Positives = 121/318 (38%), Gaps = 5/318 (1%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RK + A +L++ +K + P+ T L+ G V +A+ + E++S+ F S
Sbjct: 601 RKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSL 660
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLK 173
++ A + + I+ I + + NA L + VY+ + G L+
Sbjct: 661 THRRVLQACSQSRRLDVILDIHEWM--MNAGLHADITVYNTLLQVLCYHGMTRKATVVLE 718
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
EM+ G + D+ T NA I+ + + L Y ++ + +
Sbjct: 719 EMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVG 778
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+ G L ++ + NL +++L + R + M GF P ++T+N
Sbjct: 779 RIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYN 838
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLD 353
F++ M + M+ V P TY +V + R G + L M
Sbjct: 839 ALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEK 898
Query: 354 D-SPVVSTDPYVFEAFGK 370
SP T ++ AF K
Sbjct: 899 GFSPSKGTLSFICRAFSK 916
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 49/278 (17%)
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE- 150
NG + EA ++++ S L + L+D + G ++ RN +LP+
Sbjct: 497 NGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRN--MLPDA 554
Query: 151 -VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS-------LTE 202
VY+ I+C G+ + ++ L EM + G D +T N I+ + R G L E
Sbjct: 555 VVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHE 614
Query: 203 META------------------YGRLKRSRHLIDKEGIRAVSFTYLKERKFFM------- 237
M+ + G ++++++L+++ S + L R+
Sbjct: 615 MKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRR 674
Query: 238 ------LGEFLRDVGLGRKDLGNLLWNLLL--LSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+ E++ + GL D+ ++N LL L Y G + ++ E M +G PD
Sbjct: 675 LDVILDIHEWMMNAGL-HADI--TVYNTLLQVLCYHGMTRKATVVLE--EMLGSGIAPDT 729
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
TFN + + S + + M H+++ P++ T+
Sbjct: 730 ITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATF 767
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 83/200 (41%)
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+S+ D+++ + + Y+ ++ F + GQ++ L M G + AT FI+Y
Sbjct: 189 LSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVY 248
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
Y R + E Y + R+ L+D + A+ ++ +F R++
Sbjct: 249 YCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPN 308
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
++ + L+ S A + K L M G DL T+ + ++ +L
Sbjct: 309 HVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLR 368
Query: 314 HMKHESVGPDLVTYGCVVDA 333
+++ P+ VTY ++DA
Sbjct: 369 FALSDNLSPNGVTYTVLIDA 388
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 1/187 (0%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL ++R V ++LV L R + A+ L + G P++ T C L+
Sbjct: 260 DLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSL 319
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
A G E + E++S V+ + + LMD G+ G +E+ + N
Sbjct: 320 AKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNG 379
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
Y+ I K ++ E L EM + S + T ++ I + + G L + T Y R
Sbjct: 380 VTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG-LLDKATEYKR 438
Query: 210 LKRSRHL 216
+ + R +
Sbjct: 439 MMKERGI 445
>gi|410110085|gb|AFV61122.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
fucata]
Length = 382
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L+ +K+ G++
Sbjct: 13 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVM 72
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 73 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 132
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 133 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 192
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 193 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQIL 252
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 253 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 308
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 309 DAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAY 361
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 113 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 172
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 173 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 232
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 233 RAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 292
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 293 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVVEVFDKMRGLGY 347
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 348 FPDSDVIAIVLNAYGKLQEF 367
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 121/308 (39%), Gaps = 45/308 (14%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV-------------QV 116
+K+ GL PDN L+ + NG + EA V +E+L L V ++
Sbjct: 524 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKM 583
Query: 117 LSD----------------------LMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--Y 152
LS+ L++ Y + G N+ +++ + + RN L P+V Y
Sbjct: 584 LSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRN--LKPDVVTY 641
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ I F K ++E + +M+SR + + I Y G ++E + +
Sbjct: 642 NTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVE 701
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
+ Y + EFL ++ L + +N L+ G K ++
Sbjct: 702 KGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLI---NGFIKEEN 758
Query: 273 LQREFM---RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ R F +M +G PD+ T+N+ FSR + L + M V PD TY
Sbjct: 759 MDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTS 818
Query: 330 VVDAYLDK 337
+++ ++ +
Sbjct: 819 LINGHVTQ 826
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/326 (19%), Positives = 123/326 (37%), Gaps = 1/326 (0%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C SL+ L + LA ++ V G+ + TL ++ N + + ++
Sbjct: 326 CNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDME 385
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
V + L++AY R G E ++D +S + Y+ I+ K G+
Sbjct: 386 EKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYL 445
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ L EM+ G S D+AT N ++ R ++ + E + + + D A+
Sbjct: 446 RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI 505
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K ++ RD+ N+++ +L+ + N M + M E G
Sbjct: 506 GLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCX 565
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL-DKRLGRNLDF 345
D+ T+N + M + M V PD T+ +++ Y D + + +
Sbjct: 566 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTL 625
Query: 346 GLSKMNLDDSPVVSTDPYVFEAFGKG 371
+ + P V T + + F KG
Sbjct: 626 FEMMIQRNLKPDVVTYNTLIDGFCKG 651
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/312 (18%), Positives = 129/312 (41%), Gaps = 7/312 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + + S+G++PD + AL+ + NG + +A + ++ ++ + + L+
Sbjct: 482 AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIG 541
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ R G +E + + D++ + L Y+ ++ K+ L + EM RG
Sbjct: 542 GFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFP 601
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T I Y + G++ + T + + + D + + K + + E
Sbjct: 602 DFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELW 661
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
D+ R ++ + +L+ Y + R + M E GF + T N + R
Sbjct: 662 NDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRA 721
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN-LDDS---PVV 358
L +M + + PD +TY +++ ++ + N+D + +N +++S P V
Sbjct: 722 GNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE---ENMDRAFALVNKMENSGLLPDV 778
Query: 359 STDPYVFEAFGK 370
T + F +
Sbjct: 779 ITYNVILNGFSR 790
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/297 (19%), Positives = 127/297 (42%), Gaps = 15/297 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+LV L R K+ + L++ V+ G+ PD+ A++ ++++G V EA ++ ++
Sbjct: 82 TTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKE 141
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+ + L+ +G +G +E + +++ + ++ ++ P Y+ I + + +L
Sbjct: 142 CGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMM-IQDGNVKPNERTYNILIQAWCTKNEL 200
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E N + +MV+ G D T N +++ G E ++++ + + K R
Sbjct: 201 EEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKV-KPNERTC 259
Query: 226 SFT---YLKERKFFMLGEFLRDVGLGRKDLG----NLLWNLLLLSYAGNFKMKSLQREFM 278
Y KE FL + K+LG +++N L+ Y ++
Sbjct: 260 GIIIRGYCKEGNMTEALRFLYKM----KELGVHPNPVVFNSLIKGYLDITDTDGVEEALT 315
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
M E G PD+ T++ A+S + + + M + PD+ Y + Y+
Sbjct: 316 LMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYV 372
>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
turbinata]
Length = 441
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRKQ---------EGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K GF V +++ G+ K A L++ +K+ G++
Sbjct: 59 ELSRKLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 118
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 119 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 178
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 179 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 238
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 239 TLEHEKANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 298
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 299 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 354
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 355 DAGEVKDITVFERMIHLLSKYKKYSNVIEVFDKMRGLGYFPDSDVIAIVLNAY 407
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 159 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 218
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 219 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLD 278
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 279 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 338
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 339 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVIEVFDKMRGLGY 393
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 394 FPDSDVIAIVLNAYGKLQEF 413
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 74 FSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 133
Query: 337 KR 338
+
Sbjct: 134 NK 135
>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 933
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 115/286 (40%), Gaps = 35/286 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+LV R + A +++ +K G+ P+ +T ++ Y V EA ++E ++ +
Sbjct: 209 TLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRN 268
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+L V LS L+ R G F+E ++ ++ A Y I K G+ + +
Sbjct: 269 GVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKEL 328
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+ L EMVSRG +D T A + + + G E+ K+ +R
Sbjct: 329 LSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEV---------------KDTLR----- 368
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
F L + L G + + +L+ + + ++ + M E P+
Sbjct: 369 -------FALSDNLSPNG--------VTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPN 413
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ TF+ F + + MK + P++VTYG ++D +
Sbjct: 414 VVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGF 459
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 103/256 (40%), Gaps = 1/256 (0%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
D T+ L+ NG V +A + L V + L+ Y R+G +S+
Sbjct: 134 DGVTVNTLLAGLCRNGQV-DAAAALADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVA 192
Query: 138 DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
D+++ + + Y+ ++ F + GQ++ L M G + AT FI+YY R
Sbjct: 193 DRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRT 252
Query: 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW 257
+ E Y + R+ L+D + A+ ++ +F R++ ++ +
Sbjct: 253 KGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTY 312
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
L+ S A + K L M G DL T+ + ++ +L
Sbjct: 313 CTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALS 372
Query: 318 ESVGPDLVTYGCVVDA 333
+++ P+ VTY ++DA
Sbjct: 373 DNLSPNGVTYTVLIDA 388
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 65/318 (20%), Positives = 121/318 (38%), Gaps = 5/318 (1%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RK + A +L++ +K + P+ T L+ G V +A+ + E++S+ F S
Sbjct: 601 RKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSL 660
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLK 173
++ A + + I+ I + + NA L + VY+ + G L+
Sbjct: 661 THRRVLQACSQSRRLDVILDIHEWM--MNAGLHADITVYNTLLQVLCYHGMTRKATVVLE 718
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
EM+ G + D+ T NA I+ + + L Y ++ + +
Sbjct: 719 EMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVG 778
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+ G L ++ + NL +++L + R + M GF P ++T+N
Sbjct: 779 RIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYN 838
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLD 353
F++ M + M+ V P TY +V + R G + L M
Sbjct: 839 ALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEK 898
Query: 354 D-SPVVSTDPYVFEAFGK 370
SP T ++ AF K
Sbjct: 899 GFSPSKGTLSFICRAFSK 916
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 12/246 (4%)
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE- 150
NG + EA ++++ S L + L+D + G ++ RN +LP+
Sbjct: 497 NGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRN--MLPDA 554
Query: 151 -VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
VY+ I+C G+ + ++ L EM + G D +T N I+ + R G +
Sbjct: 555 VVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHE 614
Query: 210 LKRSR---HLIDKEGIRAVSF-TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+K S +LI + A F T E+ ++L E + G L + +L + +
Sbjct: 615 MKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMV-SAGFSPSSLTH---RRVLQACS 670
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+ ++ + M AG H D+T +N M + LE M + PD +
Sbjct: 671 QSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTI 730
Query: 326 TYGCVV 331
T+ ++
Sbjct: 731 TFNALI 736
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 1/187 (0%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL ++R V ++LV L R + A+ L + G P++ T C L+
Sbjct: 260 DLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSL 319
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
A G E + E++S V+ + + LMD G+ G +E+ + N
Sbjct: 320 AKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNG 379
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
Y+ I K ++ E L EM + S + T ++ I + + G L + T Y R
Sbjct: 380 VTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRG-LLDKATEYKR 438
Query: 210 LKRSRHL 216
+ + R +
Sbjct: 439 MMKERGI 445
>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
Length = 633
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ K+ L +T+++ G++PD T ++ + G V +A ++EE+ S
Sbjct: 435 LGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPD 494
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
V + +++ G+ G +E + + + D P+V YS I CFGK ++++ +
Sbjct: 495 VVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYD--PDVFTYSILIECFGKSNKVDMACSL 552
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EMV++G + T N + R G TE Y LK ++G+ S TY
Sbjct: 553 FDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETLK-------QQGLTPDSITY 603
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 131/322 (40%), Gaps = 26/322 (8%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A+Q+ +K PD T L+ G + + EE++S VL++ + +++
Sbjct: 237 AYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIE 296
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
A G+ +E I ++ ++ +D P YS + GQL + L + G
Sbjct: 297 ALGKNKMVDEAIFMLSKMI--ESDCRPNQFTYSIMLDVLSTGGQLHRLNEILD--ICSG- 351
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL---KERKFFM 237
++ + I + G +E + + R+ S D+ ++ K +
Sbjct: 352 CLNRPVYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAID 411
Query: 238 LGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE-FMRMSEAGFHPDLTTFNIRA 296
L + + G+ D+G ++N++ S G K S + M G PD+ T+NI
Sbjct: 412 LLHMMPEKGI-TTDVG--MYNMIF-SALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMI 467
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSP 356
+F R+ + E M+ S PD+VTY +++ LG+N D + M D
Sbjct: 468 SSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINC-----LGKNGDLDEAHMLFKDMQ 522
Query: 357 VVSTDPYVF------EAFGKGD 372
DP VF E FGK +
Sbjct: 523 EKGYDPDVFTYSILIECFGKSN 544
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 123/316 (38%), Gaps = 43/316 (13%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L + S+G PD T LM G A + +E+ ++ S L+
Sbjct: 335 ATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLH 394
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
++ R G +++ +++DQ+S + + + Y+ I GK G+L+ ++EM S+G
Sbjct: 395 SFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKP 454
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID-----------------KEGIR-- 223
D T N I + + E E +G L + + +EG+R
Sbjct: 455 DICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLA 514
Query: 224 -----------AVSFTYL---------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLS 263
VS+ L +R +L E + G K N +N+L+
Sbjct: 515 NEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTK---GIKP-NNFSYNMLINE 570
Query: 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
K++ M G PD+ T+N ++ LE + +E+V PD
Sbjct: 571 LCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPD 630
Query: 324 LVTYGCVVDAYLDKRL 339
+VTY ++ + RL
Sbjct: 631 IVTYNILISWHCKVRL 646
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 129/315 (40%), Gaps = 41/315 (13%)
Query: 27 KNG--DLARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
+NG D AR ++ +GF + ++ LG+ K A +LV +KS+G PD
Sbjct: 398 RNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDIC 457
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T ++ NN + EA+ ++ LL V + + L+ A G + E + + +++
Sbjct: 458 TYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEM 517
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
L Y+ I K+G ++ L+EM+++G ++ + N I + G +
Sbjct: 518 VLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKV 577
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
+ L+ S+ +++ +G+ TY N L N L
Sbjct: 578 RDA------LELSKEMLN-QGLTPDIVTY------------------------NTLINGL 606
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
+ + L+ ++ HPD+ T+NI ++ + D + L+ +
Sbjct: 607 CKVGWTHAALNLLE----KLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGI 662
Query: 321 GPDLVTYGCVVDAYL 335
P+ T+G +V ++
Sbjct: 663 VPNERTWGMMVQNFV 677
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 120/300 (40%), Gaps = 5/300 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS--DLMDAYGRIGCFN 131
G +PD + L+ + G +A + + V S V++ ++D + + G N
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVN 236
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ + ++ R YS + K ++ E L++MV++G ++ T N I
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLI 296
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
YS G E + ++R L D + + K K + + + ++
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQN 356
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+N++L YA + + F M G P + TFN+ A++ M +
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMII 416
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
M+ V P+++TY V+ A R+G+ +D + K N V+ D Y + +G
Sbjct: 417 FNEMRDHGVKPNVLTYTTVIAALC--RIGK-MDDAMEKFNQMIDQGVAPDKYAYHCLIQG 473
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 145/359 (40%), Gaps = 42/359 (11%)
Query: 27 KNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM 86
K DL +++++ FV +S+V L + + A + + ++G+LP+N T L+
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLI 296
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
Y++ G EA V++E+ S + V + LM + + G E + D ++ + +
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQN 356
Query: 147 LLPEVYSRAI--SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL---- 200
P+V+S I + + +G L M + M+ G + T N I Y+ G L
Sbjct: 357 --PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAM 414
Query: 201 ------------------TEMETAYGRLKRSRHLIDK------EGIRAVSFTY-LKERKF 235
T + A R+ + ++K +G+ + Y + F
Sbjct: 415 IIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 474
Query: 236 FMLGEFLRDVGLGRKDLGN------LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
G L+ L + + N +L++ ++ + ++ Q F G HP
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA 534
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348
+++ + + + M + P+ V YG +V+ Y ++GR +D GLS
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYC--KIGR-IDEGLS 590
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 47/262 (17%)
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+V Y+ I F K+G + + KEMV RG D F+ Y S +L +
Sbjct: 217 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPD------FVTYSSVVHALCKARAM 270
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
R +++K G+ ++TY N L+ Y+
Sbjct: 271 DKAEAFLRQMVNK-GVLPNNWTY----------------------------NNLIYGYSS 301
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ K R F M PD+ TFN+ + + + + M + PD+ +
Sbjct: 302 TGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 361
Query: 327 YGCVVDAYLDKRLGRNLDF-GLSKMNLDD--SPVVSTDPYVFEAFGK-GDFHSSSEAFLE 382
Y +++ Y K G +D L + L D +PV+ T + +A+ G + F E
Sbjct: 362 YNIMLNGYATK--GCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNE 419
Query: 383 FK----RQRKWTYRKLIAVYLK 400
+ + TY +IA +
Sbjct: 420 MRDHGVKPNVLTYTTVIAALCR 441
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1164
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 123/320 (38%), Gaps = 26/320 (8%)
Query: 30 DLARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D K+I KQ+G S++ L R K A + + + +G+LPD L
Sbjct: 721 DKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTL 780
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ + G + A + E+ S V + ++ + +IG E + ++ CR
Sbjct: 781 VDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGL 840
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+ ++ ++ + K G ++ M+ G S + T I + G L ++
Sbjct: 841 EPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL---DS 897
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLK-----------ERKFFMLGEFLRDVGLGRKDLGN 254
A L H + K G++ FTY E ++GEF GL +
Sbjct: 898 ANELL----HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF-EAAGL---NADT 949
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ + L+ +Y + +M Q M G P + TFN+ F M D L
Sbjct: 950 VTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNW 1009
Query: 315 MKHESVGPDLVTYGCVVDAY 334
M + + P+ T+ C+V Y
Sbjct: 1010 MLAKGIAPNATTFNCLVKQY 1029
>gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 494
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 31/229 (13%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VYS+ IS GK+GQ+ + EM + G D++ NA I
Sbjct: 129 VYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALI------------------- 169
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ HL K+ +A+ +L F + G+ R + +N+L ++A K+
Sbjct: 170 --TAHLHSKDKAKAL---------VKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKV 218
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ F + E+ D+ T+N A+ + ++ L L MK + PD++++ +
Sbjct: 219 DQVNTLFKDLDESVVSADIYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDIISFNLL 278
Query: 331 VDAYLDKRLGRNLDFGL-SKMNLDDSPVVSTDPYVFEAFGKGDFHSSSE 378
+D+Y K+L ++ S + + P + T + +GK +E
Sbjct: 279 IDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARLREKAE 327
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 135/338 (39%), Gaps = 29/338 (8%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+ L+ +G+K + +A L + +++ G PD S AL+ + ++ +A V ++LS
Sbjct: 131 SKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALV---KVLS 187
Query: 108 -----------SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+++ +L+ ++ N + +D+ S +AD+ Y+ +
Sbjct: 188 YFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDE-SVVSADIY--TYNGVM 244
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
+GK G ++ ME L M S D + N I Y + +ME + L RS+
Sbjct: 245 DAYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKER 304
Query: 217 IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG----NLLWNLLLLSYAGNFKMKS 272
++ Y K R L E +V KD+G + L++ Y G+ S
Sbjct: 305 PTLPTFNSMITNYGKAR----LREKAEEVFRKMKDMGYDPSYVTCESLIMMY-GHCDCVS 359
Query: 273 LQRE-FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
RE F M +G ++T N + + + L E + V PD TY +
Sbjct: 360 KAREIFDGMVNSGKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLY 419
Query: 332 DAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFG 369
AY + + N+D + ++ + +A G
Sbjct: 420 KAY--TKADKKELLEKLLKNMDKAGIIPNKRFFLDALG 455
>gi|410110111|gb|AFV61135.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
duartei]
Length = 381
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 125/321 (38%), Gaps = 39/321 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ G+ K A L+ +K+ G++P+ ++ L+ Y N LEA V+ E+
Sbjct: 44 AMINVFGKAKLFREARSLIGEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREI 103
Query: 109 SFVLSVQVLSDLMDAYGRIG-----------------------------------CFNEI 133
+L + + ++D YG++G F E
Sbjct: 104 KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEA 163
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I + + +N + Y+ + +GK + E N ++EM SRG +S T + I
Sbjct: 164 IHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISI 223
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
+ + G L + +L+ S ID+ + + Y + L + L R D
Sbjct: 224 WGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHE--LKRPD-- 279
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
N+ + + AG +++ F + +AG D+T F S+ + ++ +
Sbjct: 280 NIPRDTAIHILAGAGRIEEATYVFRQXIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFD 339
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
M+ PD V++AY
Sbjct: 340 KMRGLGYFPDSDVIAIVLNAY 360
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 105/259 (40%), Gaps = 4/259 (1%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 112 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 171
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 172 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 231
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 232 RAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 291
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
E ++ + + D G KD+ + LLS K ++ F +M G+
Sbjct: 292 GAGRIEEATYVFRQXI-DAG-EVKDITVFERMIHLLSKYK--KYSNVVEVFDKMRGLGYF 347
Query: 287 PDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 348 PDSDVIAIVLNAYGKLQEF 366
>gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera]
Length = 862
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 21/266 (7%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L PH A + ++ L+ D CA++ + G + A+ +++E++
Sbjct: 554 SLIQILASADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGY 613
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL--PEVYSRAISCFGKQGQLE 166
+ V V L++A+ +G E ++ ++ + RNA L +Y+ I + K G LE
Sbjct: 614 NVQPDVVVYGILINAFADVGNVREAVNYVNAL--RNAGLPMNAVIYNSLIKLYTKVGYLE 671
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ K + + D + N I YS + + E + LKR K S
Sbjct: 672 EAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKR------KGDANEFS 725
Query: 227 FTYL--------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
F + K ++ F + + +R++GL DL L +N +L YA + + K F
Sbjct: 726 FAMMLCMYKRIGKLKEAFQIVQKMRELGL-VTDL--LSYNNVLGFYAMDGRFKDAVGTFK 782
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSM 304
M EA PD TF V + +
Sbjct: 783 EMIEAAIQPDDCTFKSLGVVLVKCGI 808
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/344 (20%), Positives = 131/344 (38%), Gaps = 47/344 (13%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ +K H L + + S G+ P NST L+ Y+ G EA + W + ++ +
Sbjct: 206 LGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEA-LHWLDRMNKQGMEP 264
Query: 114 VQV-LSDLMDAYGRIGCFNEIISIIDQVSCRNAD-----LLPEVYSRAISCFGKQGQLEL 167
+V + ++ Y + G F + S +A L Y+ I +GK GQL
Sbjct: 265 DEVTMGVVVQTYKKAGEFKKAEQFFKNWSLESASQPHVCLSSYTYNTLIDTYGKAGQLRE 324
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+T M+ G ++ T N I G L E + +++ R D
Sbjct: 325 ASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTR------- 377
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
+N+L+ +A + + F +M EA P
Sbjct: 378 ----------------------------TYNILISLHAKHNNIDRAASYFKKMKEARLEP 409
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGL 347
DL ++ AFS + + + + M + D T + Y++ + +
Sbjct: 410 DLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEAGMLKKSWLWF 469
Query: 348 SKMNLDDSPVVSTDPYV--FEAFG-KGDFHSSSEAFLEFKRQRK 388
+ +L+ + +S++ Y +A+G +G + +AFL K RK
Sbjct: 470 RRFHLEGN--MSSECYSANIDAYGERGHILEAEKAFLCCKESRK 511
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 25/246 (10%)
Query: 97 EAQVVWEELLSS---SFVLSVQVLSDLMDAYGRIGCFN---EIISIIDQVSCRNADLLPE 150
EA WEE LS+ S +L Q C+ EI + + C +++
Sbjct: 152 EALSPWEESLSNKERSIILKEQ------------SCWERALEIFEWLKKKGCYELNVIH- 198
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y+ + GK + +E+ EM+SRG + ++T I YS+ G E R+
Sbjct: 199 -YNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRM 257
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD-----LGNLLWNLLLLSYA 265
+ D+ + V TY K +F +F ++ L L + +N L+ +Y
Sbjct: 258 NKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLESASQPHVCLSSYTYNTLIDTYG 317
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+++ F M G P+ TFN + ++ M+ PD
Sbjct: 318 KAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTR 377
Query: 326 TYGCVV 331
TY ++
Sbjct: 378 TYNILI 383
>gi|357487221|ref|XP_003613898.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515233|gb|AES96856.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 807
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/359 (19%), Positives = 131/359 (36%), Gaps = 59/359 (16%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+++K L N + + G+LP NST L+ Y+ +GF EA + +LS
Sbjct: 152 LGKERKWRFLESLWNEMNANGVLPVNSTYGTLIDVYSKSGFKEEALGWLQRMLSQGMEPD 211
Query: 114 VQVLSDLMDAYGRIGCFNE--------------IISI----------IDQVSCRNADLLP 149
+ ++ Y R F + +I+I ++VS N L
Sbjct: 212 EVTMGVVVQLYKRAREFQKAEEFFRKWSRGEPLVIAIDHNTVDVRHVCNEVSHVNVCLNS 271
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
Y+ I +GK GQ++ + +M+ +G + + T N I Y G + E+ R
Sbjct: 272 HTYNTLIDIYGKAGQIQAVYEIFAKMIKQGVAPTTVTFNTMIHLYGNHGRIREVSLLLQR 331
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
++ R D + TY N+L+ +
Sbjct: 332 MEELRCPPD-------TRTY----------------------------NILISVLVKHNN 356
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+K + M+M EA PDL ++ A+S M + + M + D T
Sbjct: 357 IKLAAKYLMKMKEAFLEPDLVSYRTLLYAYSTRKMVQEAEELVREMDERGLKIDEFTQAA 416
Query: 330 VVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRK 388
+ Y++ + + ++ + S +A+G+ + +E +Q+K
Sbjct: 417 LTRMYVESNMLEQSWLWFRRFHVAGNITSSCYCANIDAYGEQGYTLEAEKVFMCCKQKK 475
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 116/254 (45%), Gaps = 15/254 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ L KPH+A +N ++ GL+ D CA++ + + A+ ++ E++
Sbjct: 518 SSLIHILASADKPHIAKPYLNKMQEAGLVSDCILYCAVISSFVKLSQLDMAEELYIEMIG 577
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL--PEVYSRAISCFGKQGQL 165
+ + S L++A+ +G + +D++ RNA + +Y+ + + K G L
Sbjct: 578 HTVKPDAIIYSVLINAFADVGNVIKATGYLDRM--RNAGFVGNQAIYNSLMKLYTKIGYL 635
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ + T + S + + N I Y+ + + + + LK++ I E A+
Sbjct: 636 KEAQQTYTLLQSLDQAPSVFSSNCMIDLYTERLMVEQAKEIFESLKKNN--IANEFSYAM 693
Query: 226 SFTYLKE----RKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRM 280
K+ + F + + +R GL L +LL +N +L Y+ + +++ + F M
Sbjct: 694 MLCMYKKIGRLDEAFQIAKQMRKQGL----LTDLLSYNNVLGLYSMDRRLREAKETFKEM 749
Query: 281 SEAGFHPDLTTFNI 294
E+G H ++ NI
Sbjct: 750 IESGIHYGVSKHNI 763
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 91/416 (21%), Positives = 159/416 (38%), Gaps = 67/416 (16%)
Query: 27 KNGDLARKIIRYRKQEG-------FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDN 79
++ DL K + + G V +L++ + K L++ ++ G P++
Sbjct: 210 RDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPND 269
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
T L+ + G +A+ + E+L + +S + L+ Y G E +S+ ++
Sbjct: 270 VTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEE 329
Query: 140 VSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199
+ + A Y+ I K G++ L +M++ D + N I Y R G+
Sbjct: 330 MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGN 389
Query: 200 LT-------EMETAY------------------GRLKRSRHL---IDKEGIRA--VSFTY 229
L E+ + Y G L+ ++ L + EGI V++T
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI 449
Query: 230 L-----KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA------GNFKMKSLQREFM 278
L K M EF ++ L L L SYA G K+ R F
Sbjct: 450 LVNGSCKMGSLSMAQEFFDEM---------LHEGLELDSYAYATRIVGELKLGDTSRAFS 500
Query: 279 RMSE---AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
E GF PDL +N+ ++ + L+ M + V PD VTY ++ A+L
Sbjct: 501 LQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHL 560
Query: 336 DK---RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRK 388
+ R GR + + + L S VV+ + GKG AF+ F ++
Sbjct: 561 ENGRLRKGREIFYEMLSKGLTPS-VVTYTVLIHGHAGKGRLE---RAFIYFSEMQE 612
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 128/312 (41%), Gaps = 41/312 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ L R+ + +A QL + +EG+ PD T L+ G + AQ ++E+L
Sbjct: 414 TLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHE 473
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN--ADLLPEVYSRAISCFGKQGQLE 166
L + + ++G + S+ +++ + DL+ +Y+ + K G LE
Sbjct: 474 GLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLI--IYNVVVDGLCKLGNLE 531
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL---IDKEGIR 223
L++MVS G D Y + S+ GRL++ R + + +G+
Sbjct: 532 EASELLQKMVSDGVIPD----------YVTYTSIIHAHLENGRLRKGREIFYEMLSKGLT 581
Query: 224 AVSFTYLK-----------ERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMK 271
TY ER F E +++ G+ L N++ +N L+ +M
Sbjct: 582 PSVVTYTVLIHGHAGKGRLERAFIYFSE-MQEKGI----LPNVITYNSLINGLCKVRRMD 636
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCV 330
F M E G P+ ++ I M W LSL + M V PD T+ +
Sbjct: 637 QAYNFFAEMVEKGIFPNKYSYTILINENCNMGN-WQEALSLYKQMLDRGVQPDSCTHSAL 695
Query: 331 VDAYLDKRLGRN 342
+ K+LG++
Sbjct: 696 L-----KQLGKD 702
>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
Length = 600
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/363 (20%), Positives = 140/363 (38%), Gaps = 85/363 (23%)
Query: 27 KNGDLAR--KIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K GD +R ++++Y ++G+ + L+E GR K+ A + +++ G P
Sbjct: 152 KLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSGPQPSPV 211
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLS---SSFVLSVQVLSDLMDAYGRIG--------- 128
T ++ EA+ ++E+LL+ +SF ++ ++ Y + G
Sbjct: 212 TYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLF 271
Query: 129 -------------CFN----------EIISIIDQVSCRNADLLPEV--YSRAISCFGKQG 163
FN E+ +I DQ+ + A L P+V YS I +GK
Sbjct: 272 AQMSERGIPLSTVTFNSLMSFETEYKEVSNIYDQM--QRAGLKPDVVSYSLLIKAYGKAR 329
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+ E +EM+ G + N + ++ G + E T + ++R R D
Sbjct: 330 REEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVEEANTVFRAMRRHRVEPD----- 384
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
S+T ++L+Y +M ++ F R+ E
Sbjct: 385 LCSYT------------------------------TMVLAYVNASEMNGAEKFFRRIKED 414
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNL 343
G P++ + +S+++ + E M+ + V P+ Y ++DA GRN
Sbjct: 415 GLKPNVVVYGTLMKGYSKLNNLEKVMRVYERMRIQGVEPNQTIYTTIMDAQ-----GRNS 469
Query: 344 DFG 346
DFG
Sbjct: 470 DFG 472
>gi|359477372|ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
[Vitis vinifera]
Length = 881
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 21/266 (7%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L PH A + ++ L+ D CA++ + G + A+ +++E++
Sbjct: 573 SLIQILASADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGY 632
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL--PEVYSRAISCFGKQGQLE 166
+ V V L++A+ +G E ++ ++ + RNA L +Y+ I + K G LE
Sbjct: 633 NVQPDVVVYGILINAFADVGNVREAVNYVNAL--RNAGLPMNAVIYNSLIKLYTKVGYLE 690
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ K + + D + N I YS + + E + LKR K S
Sbjct: 691 EAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKR------KGDANEFS 744
Query: 227 FTYL--------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
F + K ++ F + + +R++GL DL L +N +L YA + + K F
Sbjct: 745 FAMMLCMYKRIGKLKEAFQIVQKMRELGL-VTDL--LSYNNVLGFYAMDGRFKDAVGTFK 801
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSM 304
M EA PD TF V + +
Sbjct: 802 EMIEAAIQPDDCTFKSLGVVLVKCGI 827
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 98/265 (36%), Gaps = 44/265 (16%)
Query: 97 EAQVVWEELLSS---SFVLSVQVLSDLMDAYGRIGCFN---EIISIIDQVSCRNADLLPE 150
EA WEE LS+ S +L Q C+ EI + + C +++
Sbjct: 152 EALSPWEESLSNKERSIILKEQ------------SCWERALEIFEWLKKKGCYELNVIH- 198
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y+ + GK + +E+ EM+SRG + ++T I YS+ G E R+
Sbjct: 199 -YNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRM 257
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR--KD----------------- 251
+ D+ + V TY K +F +F ++ LG+ KD
Sbjct: 258 NKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLGKTLKDEGKTSEPTATSAVESAS 317
Query: 252 -----LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW 306
L + +N L+ +Y +++ F M G P+ TFN
Sbjct: 318 QPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLE 377
Query: 307 DLHLSLEHMKHESVGPDLVTYGCVV 331
+ ++ M+ PD TY ++
Sbjct: 378 EAASLMQKMEELRCPPDTRTYNILI 402
>gi|357123699|ref|XP_003563545.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Brachypodium distachyon]
Length = 492
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 147/345 (42%), Gaps = 14/345 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E L + LA +L+ + +G+ + T L+ YA G + ++ V E+
Sbjct: 128 ALLEGLLARAHLCLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRR 187
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
L S L+ Y G + + +I ++ +L ++Y+ I FGK GQL
Sbjct: 188 GIQLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADA 247
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
++M + G D AT NA I ++ R G++ + ++ D + ++
Sbjct: 248 RRLFEKMRAEGIKPDIATWNALIRWHCRVGNMKRALRFFAAMQEEGMYPDPKIFMSIISR 307
Query: 229 YLKERKFFMLGEF---LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
++ K+ L + +R+ GL K+ G ++ +L+ Y + + +
Sbjct: 308 LGEQGKWDELKKLFDKMRNRGL--KESGA-VYAVLVDIYGQYGRFRDAHECVAALKAEEL 364
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345
H + F + A A+++ + L+ M+ E + P+LV +++A+ GR+L+
Sbjct: 365 HLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAF--STAGRHLEA 422
Query: 346 GLSKMNLDDSPVVSTDPYVFEAFGKG-----DFHSSSEAFLEFKR 385
++ DS +S D + KG F SE + E +R
Sbjct: 423 VAVFQHIKDSG-MSPDVVTYTTLMKGFMRVKKFEKVSEVYNEMER 466
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 50/295 (16%), Positives = 113/295 (38%), Gaps = 4/295 (1%)
Query: 29 GDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC 88
G++ R+ I+ G+ L D G KK A L+ ++ G+ D L+
Sbjct: 182 GEMKRRGIQL-DTAGYSTLVRLYRDNGMWKK---ATDLIMEMQELGVELDVKIYNGLIDT 237
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ G + +A+ ++E++ + + + L+ + R+G + +
Sbjct: 238 FGKYGQLADARRLFEKMRAEGIKPDIATWNALIRWHCRVGNMKRALRFFAAMQEEGMYPD 297
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
P+++ IS G+QG+ + ++ +M +RG A + Y ++G +
Sbjct: 298 PKIFMSIISRLGEQGKWDELKKLFDKMRNRGLKESGAVYAVLVDIYGQYGRFRDAHECVA 357
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
LK + ++ Y ++ L+ + + ++ NLL+ +++
Sbjct: 358 ALKAEELHLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFSTAG 417
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+ F + ++G PD+ T+ F R+ F + M+ PD
Sbjct: 418 RHLEAVAVFQHIKDSGMSPDVVTYTTLMKGFMRVKKFEKVSEVYNEMERAGCTPD 472
>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74850, chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
Length = 862
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/321 (21%), Positives = 127/321 (39%), Gaps = 16/321 (4%)
Query: 29 GDLARKIIRYRKQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
GD A + R G V + LVE G+ ++ L+ + S G LPD ++
Sbjct: 263 GDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNV 322
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+ YA +G + EA V+ ++ ++ + S L++ +G+ G ++++ + ++ N
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG------ 198
D Y+ I FG+ G + + +MV D T I + G
Sbjct: 383 TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDAR 442
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
+ + TA + S+ I A L E + +VG + ++
Sbjct: 443 KILQYMTANDIVPSSKAYTGV--IEAFGQAALYEEALVAFNT-MHEVG---SNPSIETFH 496
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
LL S+A +K + R+ ++G + TFN + A+ + F + + M+
Sbjct: 497 SLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKS 556
Query: 319 SVGPDLVTYGCVVDAYLDKRL 339
PD T V+ Y RL
Sbjct: 557 RCDPDERTLEAVLSVYSFARL 577
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHM 315
+ L+ +Y N + ++ RM P + T+N A +R + W+ L L M
Sbjct: 179 YTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEM 238
Query: 316 KHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGK 370
+HE + PD+VTY ++ A + LG + MN P ++T ++ E FGK
Sbjct: 239 RHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGK 294
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/315 (17%), Positives = 119/315 (37%), Gaps = 40/315 (12%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
++ EG+ PD T L+ A G EA++V+ + V + S L++ +G++
Sbjct: 238 MRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297
Query: 130 FNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
++ ++ +++ + LP++ Y+ + + K G ++ +M + G + ++ T
Sbjct: 298 LEKVCDLLGEMASGGS--LPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTY 355
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL 247
+ + + + G ++ + +K S
Sbjct: 356 SVLLNLFGQSGRYDDVRQLFLEMKSS---------------------------------- 381
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
D +N+L+ + K + F M E PD+ T+ A + + D
Sbjct: 382 -NTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHED 440
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN-LDDSPVVSTDPYVFE 366
L++M + P Y V++A+ L + M+ + +P + T +
Sbjct: 441 ARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLY 500
Query: 367 AFGKGDFHSSSEAFL 381
+F +G SEA L
Sbjct: 501 SFARGGLVKESEAIL 515
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 110/280 (39%), Gaps = 36/280 (12%)
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
Q+ C+ + +Y+ IS G++G L+ EM S+G S + A I Y R
Sbjct: 134 QIWCKPNE---HIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGR-- 188
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF------------MLGEF--LRD 244
GR + S L+D+ +S + L +LG F +R
Sbjct: 189 --------NGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRH 240
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
G+ + D+ + +N LL + A + F M++ G PDLTT++ F ++
Sbjct: 241 EGI-QPDI--VTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPY 363
+ L M PD+ +Y +++AY + +M +P +T
Sbjct: 298 LEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSV 357
Query: 364 VFEAFGK-GDFHSSSEAFLEFKRQRK----WTYRKLIAVY 398
+ FG+ G + + FLE K TY LI V+
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVF 397
>gi|242038885|ref|XP_002466837.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
gi|241920691|gb|EER93835.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
Length = 1014
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 125/311 (40%), Gaps = 30/311 (9%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ L R K+ A L+ ++ + L+PD T L+ + G + A V+ +L +
Sbjct: 298 MIDKLCRIKRSARAFLLLKRMRKDDLIPDECTYNTLINGFFGEGKINHAHYVFNHMLRQT 357
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA-------------- 155
FV SV + ++D Y R ++ +S++ ++ + ++P S+A
Sbjct: 358 FVPSVATYTTMIDGYCRNRRIDKALSVLSEM--QITGVMPSEISKAKQILKSMLEDGIDP 415
Query: 156 ----ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
S +G + E+ + M S DS + N I Y G++ E T Y +
Sbjct: 416 DIVTYSALINEGMITEAEHFRQYMSRMKISFDSVSFNCIIDSYCHRGNIVEAFTVYDAMV 475
Query: 212 RSRHLID----KEGIRAVS-FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
R H + + +R + +L + K FM + K +N LLL
Sbjct: 476 RYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAIDEKT-----FNALLLGICK 530
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ +M + PD+ T+ I F R + L+ M + V PD V
Sbjct: 531 YGTLDEALDLCEKMVKNNCLPDIHTYTILLSGFCRKGKILPALIMLQMMLDKGVVPDTVA 590
Query: 327 YGCVVDAYLDK 337
Y C+++ +++
Sbjct: 591 YTCLLNGLINE 601
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 103/260 (39%), Gaps = 38/260 (14%)
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
+ ++L+D + R G F E I + D++ + Y+ K+G++E E L+EM
Sbjct: 338 ICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEM 397
Query: 176 VSRGFSVDSATGNAFII-YYSRFGSLTE-------------------METAYGRLKRSRH 215
+S G ++ S N+ + R G L M +L + R
Sbjct: 398 LSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRR 457
Query: 216 LIDKEGI----------------RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
+ GI A+ + + E LR + +L N+ +N+
Sbjct: 458 HQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNI 517
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS-MFWDLHLSLEHMKHE 318
++ + K++ + M GF PD FN A+ + M LHL L MK E
Sbjct: 518 MIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHL-LGQMKIE 576
Query: 319 SVGPDLVTYGCVVDAYLDKR 338
V PD+V+YG ++D Y +
Sbjct: 577 GVQPDVVSYGTIIDGYCKAK 596
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELL 106
+L+ GR A +++T++S G+ P N T C+LM +C+A G V EA+ ++E+
Sbjct: 622 ALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHA--GLVDEAKTMFEQSR 679
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+S + V + ++ +IG +E ++ +++ R+ Y+ + + K G E
Sbjct: 680 KNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNE 739
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
EMVS G D+ + N + +S+ SL
Sbjct: 740 EASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSL 773
>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
Length = 615
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 117/314 (37%), Gaps = 43/314 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ R +K A +L +K + P T L+ Y V A + +E+
Sbjct: 273 LINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREG 332
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ V + ++DA G G F E + ++++ Y+ + + K G L
Sbjct: 333 IEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGAS 392
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
LK M+ RGF+ T N F ++S++G + E + Y ++ S + DK
Sbjct: 393 KILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDK---------- 442
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
L ++LLL ++ + M GF DL
Sbjct: 443 -------------------------LTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDL 477
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T + +M F + EHM H + P +T+ + D ++ + GL+K
Sbjct: 478 ATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFMKR--------GLTK 529
Query: 350 MNLDDSPVVSTDPY 363
M ++S+ P+
Sbjct: 530 MASKLQEMMSSVPH 543
Score = 37.7 bits (86), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+N+L+ + + K+K QR + M + P + T+ + RM ++ M+
Sbjct: 270 YNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMR 329
Query: 317 HESVGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFH 374
E + P+ + Y +VDA + R L M L+ P +ST + + + K GD
Sbjct: 330 REGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLS 389
Query: 375 SSSE 378
+S+
Sbjct: 390 GASK 393
>gi|410110099|gb|AFV61129.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
trifolia]
Length = 440
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 129/334 (38%), Gaps = 43/334 (12%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V +++ G+ K A L+ +K G++P+ ++ L+ Y N
Sbjct: 77 KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLLTMYVENKKF 136
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--------------------------- 128
LEA V+ E+ +L + + ++D YG++G
Sbjct: 137 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 196
Query: 129 --------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
F E I + + +N + Y+ + +GK + E N ++EM SRG
Sbjct: 197 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGI 256
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+S T + I + + G L + +L+ S ID+ + + Y +
Sbjct: 257 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKR 316
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L + L R D N+ + + AG +++ F + +AG D+T F S
Sbjct: 317 LLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLS 372
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ + M+ PD V++AY
Sbjct: 373 KYKKYSNVVEVFDKMRGLGYFPDSDVIAXVLNAY 406
Score = 37.7 bits (86), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 73 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLLTMYVE 132
Query: 337 KR 338
+
Sbjct: 133 NK 134
>gi|410110083|gb|AFV61121.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
cujabensis]
Length = 359
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 137/352 (38%), Gaps = 52/352 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 12 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTXGVM 71
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 72 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 131
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ I +GK
Sbjct: 132 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGK 191
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 192 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 251
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 252 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 307
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+AG D+T F S+ + ++ + M+ PD V++A
Sbjct: 308 DAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNA 359
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 27 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTXGVMPNTTSYSTLLTMYVE 86
Query: 337 KR 338
+
Sbjct: 87 NK 88
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/374 (22%), Positives = 146/374 (39%), Gaps = 35/374 (9%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+++++ L + + A L + ++ +G+ P+ T ++ + ++G EAQ + E+
Sbjct: 252 SAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFE 311
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
V S L++A + G F E + +++ R ++P Y+ I F KQ +L
Sbjct: 312 RKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRG--IIPNTITYNSMIDGFSKQNRL 369
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ E M ++G S D T F I + ++ L H + + G+ A
Sbjct: 370 DAAERMFYLMATKGCSPDVIT---FSILIDGYCGAKRVDDGMKLL----HEMSRRGLVAN 422
Query: 226 SFTYLK-ERKFFMLGEFLRDVGLGRKDLGN------LLWNLLLLSYAGNFKMKSLQREFM 278
+ TY F LG + L ++ + + + N LL N K+K F
Sbjct: 423 TITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFK 482
Query: 279 RMSEAGF-----------HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
M ++ PD+ T+NI F + E M H + PD +TY
Sbjct: 483 VMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITY 542
Query: 328 GCVVDAYLDK-RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR 385
V+D + RL S + SP V T + + K G E F E R
Sbjct: 543 NSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGR 602
Query: 386 Q----RKWTYRKLI 395
+ TYR LI
Sbjct: 603 RGIVANAITYRTLI 616
>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
[Burroughsia fastigiata]
Length = 348
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 125/321 (38%), Gaps = 39/321 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ G+ K A L++ +K+ G+ P+ ++ L+ Y N LEA V+ E+
Sbjct: 27 TMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTLLTMYVENKKFLEALSVFSEMREI 86
Query: 109 SFVLSVQVLSDLMDAYGRIG-----------------------------------CFNEI 133
+L + + ++D YG++G F E
Sbjct: 87 KCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLVRVYGDAELFGEA 146
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I + + +N + Y+ I +GK + E N ++EM SRG +S T + I
Sbjct: 147 IHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISI 206
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
+ + G L + +L+ S ID+ + + Y + L + L R D
Sbjct: 207 WGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHE--LKRPD-- 262
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
N+ + + AG +++ F + +AG D+T F S+ + ++ +
Sbjct: 263 NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFD 322
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
M+ PD V++AY
Sbjct: 323 KMRGLGYFPDSDVIAIVLNAY 343
>gi|255661156|gb|ACU25747.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 426
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 139/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA ++ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAY 400
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|255661184|gb|ACU25761.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 426
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 136/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L+ +K+ G++
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVM 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ + L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTXSYSTLLTMYVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQIL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 292 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAY 400
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 212 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 271
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 272 RAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 331
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 332 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVVEVFDKMRGLGY 386
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 387 FPDSDVIAIVLNAYGKLQEF 406
>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 426
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG + + F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRXEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAY 400
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 425
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 139/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA ++ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAY 400
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|255557939|ref|XP_002519998.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540762|gb|EEF42322.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 124/312 (39%), Gaps = 35/312 (11%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
+A +++ + GL + T L+ N G + + V E+ F L+ V S ++
Sbjct: 109 VAERVLRILDDLGLHRNQETYEILLDYNVNAGRLEDTWSVINEMKQKGFQLNSFVYSKVI 168
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
Y G + + I II+++ L +Y+ I FGK G+L+ L M +G +
Sbjct: 169 GLYRDNGMWKKAIGIIEEIREMGMPLDKHIYNSIIDTFGKYGELDEALEVLSNMQQQGIT 228
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE- 240
D T N+ I ++ + G+L++ + +++ D + + + ++ K+ ++ E
Sbjct: 229 PDIVTWNSLIRWHCKAGNLSKALELFSKMQAQGLYPDPKILVTIISRLAEQGKWNIIREN 288
Query: 241 -----------------FLRDV--GLGR-----------KDLGNL----LWNLLLLSYAG 266
L D+ GR K G L ++ +L +YA
Sbjct: 289 FDIMKSWGYKKSGAIYAILVDIYGQYGRFQDAEECISALKSEGILPSASMFCVLANAYAQ 348
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ + M G P+L N+ AF + HMK + PD+VT
Sbjct: 349 QGLCEQTVKVLQLMEAEGIEPNLIMLNVLINAFGIAGRHREALSIYHHMKESGISPDVVT 408
Query: 327 YGCVVDAYLDKR 338
Y ++ AY+ R
Sbjct: 409 YSTLMKAYIRAR 420
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A LV+ G+ + A + ++ +KSEG+LP S C L YA G + V + + +
Sbjct: 305 AILVDIYGQYGRFQDAEECISALKSEGILPSASMFCVLANAYAQQGLCEQTVKVLQLMEA 364
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
++ +L+ L++A+G G E +SI + + + + P+V YS + + + +
Sbjct: 365 EGIEPNLIMLNVLINAFGIAGRHREALSIYHHM--KESGISPDVVTYSTLMKAYIRARKF 422
Query: 166 ELMENTLKEMVSRGFSVD 183
+ + EM S G + D
Sbjct: 423 DEVPEIYSEMESSGCTPD 440
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 47/293 (16%), Positives = 108/293 (36%), Gaps = 35/293 (11%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
++N +K +G ++ ++ Y +NG +A + EE+ L + + ++D +G
Sbjct: 148 VINEMKQKGFQLNSFVYSKVIGLYRDNGMWKKAIGIIEEIREMGMPLDKHIYNSIIDTFG 207
Query: 126 RIGCFNEIISIIDQVS------------------CRNADLL-----------------PE 150
+ G +E + ++ + C+ +L P+
Sbjct: 208 KYGELDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAGNLSKALELFSKMQAQGLYPDPK 267
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+ IS +QG+ ++ M S G+ A + Y ++G + E L
Sbjct: 268 ILVTIISRLAEQGKWNIIRENFDIMKSWGYKKSGAIYAILVDIYGQYGRFQDAEECISAL 327
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
K L ++ Y ++ + L+ + + ++ N+L+ ++ +
Sbjct: 328 KSEGILPSASMFCVLANAYAQQGLCEQTVKVLQLMEAEGIEPNLIMLNVLINAFGIAGRH 387
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+ + M E+G PD+ T++ A+ R F ++ M+ PD
Sbjct: 388 REALSIYHHMKESGISPDVVTYSTLMKAYIRARKFDEVPEIYSEMESSGCTPD 440
>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
Length = 602
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/363 (20%), Positives = 140/363 (38%), Gaps = 85/363 (23%)
Query: 27 KNGDLAR--KIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K GD +R ++++Y ++G+ + L+E GR K+ A + +++ G P
Sbjct: 152 KLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSGPEPSPV 211
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLS---SSFVLSVQVLSDLMDAYGRIG--------- 128
T ++ EA+ ++E+LL+ +SF ++ ++ Y + G
Sbjct: 212 TYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLF 271
Query: 129 -------------CFN----------EIISIIDQVSCRNADLLPEV--YSRAISCFGKQG 163
FN E+ SI DQ+ + A + P+V YS I +GK
Sbjct: 272 AQMSERKIPLSTVTFNSLMSFETDYKEVSSIYDQM--QRAGMKPDVVSYSLLIKAYGKAR 329
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+ E +EM+ G + N + ++ G + E T + ++R R D
Sbjct: 330 REEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFKAMRRHRVEPD----- 384
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
S+T ++L+Y M ++ F R+ +
Sbjct: 385 LCSYT------------------------------TMVLAYVNASDMNGAEKFFRRIKDD 414
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNL 343
G P++ + +S+++ + E M+ + V P+ Y ++DA+ GRN
Sbjct: 415 GLKPNVVVYGTLMKGYSKLNNVEKVMRVYERMRIQGVEPNQTIYTTIMDAH-----GRNS 469
Query: 344 DFG 346
DFG
Sbjct: 470 DFG 472
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 48/260 (18%), Positives = 108/260 (41%), Gaps = 16/260 (6%)
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+ Y G A+ V + + + SV + LM+AYGR + + ++ ++
Sbjct: 146 LVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSG 205
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR---GFSVDSATGNAFIIYYSRFGSLT 201
+ P Y + + + + E +++++ F D + I Y + G
Sbjct: 206 PEPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYA 265
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKE-----RKFFMLGEFLRDVGLGRKDLGNLL 256
+ + ++ K + V+F L ++ + + ++ G+ + D+ +
Sbjct: 266 QARKLFAQMSER-----KIPLSTVTFNSLMSFETDYKEVSSIYDQMQRAGM-KPDV--VS 317
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
++LL+ +Y + + F M +AG P ++NI AF+ + + + + M+
Sbjct: 318 YSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFKAMR 377
Query: 317 HESVGPDLVTYGCVVDAYLD 336
V PDL +Y +V AY++
Sbjct: 378 RHRVEPDLCSYTTMVLAYVN 397
>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
Length = 475
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 116/293 (39%), Gaps = 14/293 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ R+K +++ +++EG+ P T L+ + + + + V+EE+ S
Sbjct: 107 SLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSK 166
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ V S +++AY R G + D+ + Y I+ F K GQ+E
Sbjct: 167 NLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAA 226
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
E + +M RG ++ N I Y R + + + +++K GI +T
Sbjct: 227 EMLVTDMQVRGVGINQIVFNTMIDGYCR-------KNMVDKALEIKMIMEKMGIELDVYT 279
Query: 229 Y-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
Y + + LR + ++ + L+ + M +R F M+
Sbjct: 280 YNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMA 339
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G P L T+N+ + + + M+ + + PD+ +Y +V +
Sbjct: 340 GNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGH 392
>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
Length = 669
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/247 (19%), Positives = 104/247 (42%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++L+ R ++P A + +KSEG++PD T +++ Y G V EA ++E+L S
Sbjct: 182 STLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKS 241
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
++ L + + Y R G + I+ ++ ++ + + + + K G++
Sbjct: 242 VNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQ 301
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ EM + G S T + + Y+R G+ + Y LK D ++
Sbjct: 302 AKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMK 361
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
++ + + L+++ + +L + + +YA + +R F ++ P
Sbjct: 362 ACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKP 421
Query: 288 DLTTFNI 294
D F +
Sbjct: 422 DTPLFTV 428
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 76/186 (40%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+S I+C + Q E + M S G D T N+ I Y R G + E Y +L
Sbjct: 180 TFSTLINCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKL 239
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
K +D A++ Y + + + + ++++ ++ N L+ + + K+
Sbjct: 240 KSVNWKLDTVTYGAIANVYARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKV 299
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
++ F M +G P T +I ++R+ + E +K E D+ Y +
Sbjct: 300 NQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSL 359
Query: 331 VDAYLD 336
+ A ++
Sbjct: 360 MKACVE 365
>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 426
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 139/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD +++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAY 400
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 426
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G++
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVM 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L ++ K N+ + + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHEL----KSPDNIPRDTAIHILAGAGRIEEATYVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + +L + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYANLIEVFDKMRGLGYFPDSNVIALVLNAY 400
>gi|115452625|ref|NP_001049913.1| Os03g0309800 [Oryza sativa Japonica Group]
gi|108707769|gb|ABF95564.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
gi|108707770|gb|ABF95565.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
gi|108707771|gb|ABF95566.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
gi|113548384|dbj|BAF11827.1| Os03g0309800 [Oryza sativa Japonica Group]
gi|125586018|gb|EAZ26682.1| hypothetical protein OsJ_10586 [Oryza sativa Japonica Group]
gi|215686360|dbj|BAG87621.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215741099|dbj|BAG97594.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767065|dbj|BAG99293.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767110|dbj|BAG99338.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 501
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/302 (19%), Positives = 122/302 (40%), Gaps = 39/302 (12%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P T L+L +G A+ +++E+L + ++ + L+ AY R G ++ +
Sbjct: 145 PKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRL 204
Query: 137 IDQVSCRNADLLPEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ + P+VY S I + ++++ K+M R + ++ T N + Y
Sbjct: 205 LADMKASPV-CQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGY 263
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
R G L +ME +L L D + D+
Sbjct: 264 GRAGRLDDMEK-------------------------------VLSAML-DSTTSKPDVWT 291
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ N++L + +++S+++ + + G P+ T NI A+ + M+ + +E+
Sbjct: 292 M--NIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEY 349
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGK-GD 372
M+ + T+ V++A+ D +N++ ++M + P T + FG G
Sbjct: 350 MRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFGNAGL 409
Query: 373 FH 374
FH
Sbjct: 410 FH 411
>gi|115447573|ref|NP_001047566.1| Os02g0644600 [Oryza sativa Japonica Group]
gi|49387609|dbj|BAD25805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|49388661|dbj|BAD25796.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537097|dbj|BAF09480.1| Os02g0644600 [Oryza sativa Japonica Group]
Length = 526
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Query: 149 PEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+VY S I + K G L + + MVS G + + + + + G +E+
Sbjct: 33 PDVYGYSYLIQSYCKMGNLIKAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEVIAY 92
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
+ + K S +DK TY K + L ++ G + + L+ Y
Sbjct: 93 FLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCL 152
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+M++ Q+ F M +A PD+ T+NI A F + + ++ L+ M + P+ +T
Sbjct: 153 KGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADHGLEPNSLT 212
Query: 327 YGCVV 331
YG +
Sbjct: 213 YGIAI 217
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 125/304 (41%), Gaps = 35/304 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+N +K GL PD L+ Y G + AQ V+EE+L ++ + + L
Sbjct: 124 AVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILAS 183
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL---ELMENTLKE----- 174
+ + G E+ ++D+++ + Y AI F + G L E++ N ++E
Sbjct: 184 GFCKSGLVMEVFDLLDRMADHGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDH 243
Query: 175 -------MVSRGFSVDSATGNAFIIY--YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
MV G+ + T +A++++ +R G+L + + + + + +G V
Sbjct: 244 IEVMYSSMVC-GYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNV 302
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
K + + DV + ++ L+ Y N M F M + G
Sbjct: 303 C-------KIMLEHNVVPDV---------ISYSKLISIYCQNGDMDKAHLWFHDMVQRGL 346
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345
D+ + I + + + M + + PD++ Y ++D +L + L + +
Sbjct: 347 SIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWE- 405
Query: 346 GLSK 349
G++K
Sbjct: 406 GIAK 409
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 36 IRYRKQEGFVD---CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+R +Q VD C+ L+ DL R A + + ++PD + L+ Y N
Sbjct: 269 VRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQN 328
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G + +A + + +++ + V V + LM+ Y + G E + Q++ N + P+V
Sbjct: 329 GDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMT--NLGIKPDVI 386
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGF 180
+ + L++ LKE + +G+
Sbjct: 387 AYTV----------LLDGHLKETLQQGW 404
>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 426
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 139/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD +++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAY 400
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS + D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
citrodora]
Length = 435
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/353 (19%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 59 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVM 118
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N +EA V+ E+ +L + + ++D YG++G
Sbjct: 119 PNTASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 178
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 179 FWGMRKMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 238
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 239 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVL 298
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L ++ K N+ + + AG +++ F +
Sbjct: 299 YQTMIVAYERAGLVAHAKRLLHEL----KSPDNIPRDTAIHILAGAGRIEEATYVFRQAI 354
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + + + M+ PD V++AY
Sbjct: 355 DAGEVKDITVFERMIHLFSKYKKYANAVEVFDKMRGLGYFPDSNVIALVLNAY 407
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 74 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVE 133
Query: 337 KR 338
+
Sbjct: 134 NK 135
>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
Length = 521
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 42/301 (13%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G+ +P A L +++ P+ T ALM +A G EA+ +++L +
Sbjct: 220 GKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDH 279
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLELMENTL 172
+ LM+AY + G + I Q RN P+ S I+ +G+ G E E
Sbjct: 280 YAYNALMEAYSQGGSPAGALEIF-QTMQRNG-CFPDTVSHNILINAYGRAGLYEDAEKIF 337
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
K M S GFS + + + Y+R G + E E ++R D
Sbjct: 338 KSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPD-------------- 383
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK---MKSLQREFMRMSEAGFHPDL 289
L++N L+ +Y + + M++L + ++ S PD+
Sbjct: 384 ---------------------TLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDI 422
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T+N +++ + + + PD T+ ++ Y K+L R L K
Sbjct: 423 GTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKK 482
Query: 350 M 350
M
Sbjct: 483 M 483
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 105/265 (39%), Gaps = 9/265 (3%)
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+ Y+R I +GK G+ E + M + T A + ++R G E E + +
Sbjct: 210 DTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDK 269
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
L+ + D A+ Y + E + + + N+L+ +Y
Sbjct: 270 LQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGL 329
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ ++ F M AGF P+L + + A++R + + M+ + PD + Y
Sbjct: 330 YEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNS 389
Query: 330 VVDAYLDKRLGRNLDFGLSKMNLDDS----PVVSTDPYVFEAFGKGDFHSSSEAFLEFKR 385
+++AY +++ L+KM S P + T + + + + F +E +
Sbjct: 390 LINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLA 449
Query: 386 QRKW-----TYRKLIAVYLKKQLRR 405
+ K T+ L+ Y KK+L R
Sbjct: 450 RLKLVPDATTWTALMGGYAKKKLYR 474
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 124/311 (39%), Gaps = 26/311 (8%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
K+ R+R C L+ + K + + G P T ++ C G
Sbjct: 85 KMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEG 144
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS--CRNADLLPEV 151
V A+ ++EE+ V + ++D +G++G ++ + +++ C D++
Sbjct: 145 DVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVI--T 202
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ I+CF K G+L + +EM G + + + + + + G + + Y ++
Sbjct: 203 YNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR 262
Query: 212 RSRHLIDKEGIRAVSFTYL----------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
R G+ +TY F LG + VG+ + + + L+
Sbjct: 263 RV-------GLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV---EWNVVTYTALI 312
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM-SMFWDLHLSLEHMKHESV 320
+MK + F +M AG P+L ++N F + +M L L L +K +
Sbjct: 313 DGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL-LNELKGRGI 371
Query: 321 GPDLVTYGCVV 331
PDL+ YG +
Sbjct: 372 KPDLLLYGTFI 382
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 8/211 (3%)
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD-VGLGRKDLGNL 255
G L E + ++KR R + + K K + F +D +G G +
Sbjct: 73 LGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPT-VF 131
Query: 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315
+N+++ +++ + F M G PD T+N F ++ D E M
Sbjct: 132 TYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEM 191
Query: 316 KHESVGPDLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDF 373
K PD++TY +++ + +L L+F P V + + +AF K G
Sbjct: 192 KDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMM 251
Query: 374 HSSSEAFLEFKR----QRKWTYRKLIAVYLK 400
+ + +++ +R ++TY LI K
Sbjct: 252 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCK 282
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 4/188 (2%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y+ I C K+G +E +EM RG D+ T N+ I + + G L + + +
Sbjct: 132 TYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEM 191
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV-GLGRKDLGNLL-WNLLLLSYAGNF 268
K D A+ + K K + EF R++ G G K N++ ++ L+ ++
Sbjct: 192 KDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKP--NVVSYSTLVDAFCKEG 249
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
M+ + ++ M G P+ T+ A ++ D M V ++VTY
Sbjct: 250 MMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYT 309
Query: 329 CVVDAYLD 336
++D D
Sbjct: 310 ALIDGLCD 317
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/378 (20%), Positives = 154/378 (40%), Gaps = 56/378 (14%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV-VWEELL 106
+L+ GR + ++ +L+ +K E + P T ++ A G E + ++ E+
Sbjct: 181 TALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMR 240
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
+ + L++A G +E + ++ ++P++ Y + FGK +
Sbjct: 241 HEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMN--EGGMVPDITTYRNLVETFGKLNK 298
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
LE + LKEM S G D ++ N + Y+ G + + +++ +R + + A
Sbjct: 299 LEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPN-----A 353
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
V+++ +LL Y G+ + ++ F+ M +
Sbjct: 354 VTYS------------------------------MLLNLYGGHGRYDDVRELFLEMKVSN 383
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
PD+ T+N+ F F ++ M E+V P++ TY ++ Y + G + D
Sbjct: 384 TEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLI--YACGKGGLHED 441
Query: 345 FGLSKMNLDDSPVV-STDPY--VFEAFGKGDFHSSSEAFLEFKRQRKW-------TYRKL 394
+++D+ +V ST Y V EA+G+ S EA + F + TY L
Sbjct: 442 AKKILLHMDEKGIVPSTKAYTGVIEAYGQA--ASYEEALVMFNTMNEMGSKPTVETYNSL 499
Query: 395 IAVYLKKQLRRNQ--IFW 410
I ++ + L + I W
Sbjct: 500 INMFARGGLYKESEAIMW 517
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 119/310 (38%), Gaps = 39/310 (12%)
Query: 29 GDLARKIIRYRKQEGFVDCAS----LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
GD A + R + G V + LVE G+ K +L+ ++S G LPD S+
Sbjct: 264 GDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNV 323
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+ YA+ G + A V+ ++ + V + S L++ YG G ++++ + ++ N
Sbjct: 324 LLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSN 383
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
+ Y+ I FG+ G + + +MV + T +IY G L E
Sbjct: 384 TEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEG-LIYACGKGGLHE-- 440
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
K+ +D++GI + Y ++ +Y
Sbjct: 441 ----DAKKILLHMDEKGIVPSTKAYTG----------------------------VIEAY 468
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
+ F M+E G P + T+N F+R ++ + + M V D
Sbjct: 469 GQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDR 528
Query: 325 VTYGCVVDAY 334
++ V++ Y
Sbjct: 529 DSFNGVIEGY 538
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/365 (18%), Positives = 154/365 (42%), Gaps = 15/365 (4%)
Query: 26 PKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
P G +AR + ++ + D A + ++ ++ + +L ++ + N + +
Sbjct: 88 PPRGSIARCLEIFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTI 147
Query: 86 MLCY-ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
++ G + ++ ++EE+ + SV + L+++YGR G + + +++++ +
Sbjct: 148 IISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERM--KK 205
Query: 145 ADLLPEV--YSRAISCFGKQG-QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
+ P + Y+ I+ + G E + + EM G D T N + + G
Sbjct: 206 EKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGD 265
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL----W 257
E E + + + D R + T+ K K + E L+++ + GNL +
Sbjct: 266 EAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEM----ESSGNLPDISSY 321
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
N+LL +YA ++ F +M EA P+ T+++ + + D+ MK
Sbjct: 322 NVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKV 381
Query: 318 ESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSS 376
+ PD+ TY +++ + + + + M ++ P + T + A GKG H
Sbjct: 382 SNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHED 441
Query: 377 SEAFL 381
++ L
Sbjct: 442 AKKIL 446
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 4/168 (2%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
L H +V E + P+ T L+ G +A+ + + V S + + ++
Sbjct: 410 LFHDMV----EENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVI 465
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
+AYG+ + E + + + ++ + E Y+ I+ F + G + E + +M G +
Sbjct: 466 EAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVA 525
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
D + N I Y + G E Y L+++R D+ AV Y
Sbjct: 526 RDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVY 573
>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
Length = 641
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 138/353 (39%), Gaps = 43/353 (12%)
Query: 27 KNGDL--ARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K G L RK+I R +G + +L++ +K +A+ L +K +G LP
Sbjct: 197 KEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVE 256
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA---YGRI---------- 127
T A++ + G + E+ S ++VQV + ++DA +G I
Sbjct: 257 TYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGM 316
Query: 128 ---GCFNEIIS--IIDQVSCRN-----ADLLPE------------VYSRAISCFGKQGQL 165
GC +I++ + SCR+ AD L E Y+ I + KQG
Sbjct: 317 IECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGY 376
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ N L EM RG D T A + G + T ++ R + GI +
Sbjct: 377 DRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKM-LERGVFPDAGIYNI 435
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+ L ++ + L L + L + ++ L+ + N + ++ F E G
Sbjct: 436 LMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKG 495
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
+P + +N + + M D + MK + PD TY V+D Y+ +
Sbjct: 496 MNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQ 548
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 22/367 (5%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V+ L ++ K +L+ +G +P+ L+ Y G + A ++ EL
Sbjct: 191 MVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKG 250
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
F+ +V+ +++ + + G F I ++ +++ R + +VY+ I K G +
Sbjct: 251 FLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAV 310
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
T++ M+ G D T N I R G ++E + + + +K + Y
Sbjct: 311 ETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAY 370
Query: 230 LKERKFFMLGEFLRDVG-LGRK-DL---GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
K+ + +L ++ G K DL G L+ L++ AG + RE +M E G
Sbjct: 371 CKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVV---AGEVDVALTIRE--KMLERG 425
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
PD +NI + L L M +SV PD Y +VD ++ R G NLD
Sbjct: 426 VFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFI--RNG-NLD 482
Query: 345 FGLSKMNLDDSPVVSTDPYVFEAFGKG--DFHSSSEAFLEFKRQRK-------WTYRKLI 395
L ++ + A KG F +A R +K +TY +I
Sbjct: 483 EARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVI 542
Query: 396 AVYLKKQ 402
Y+K+
Sbjct: 543 DGYVKQH 549
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 123/308 (39%), Gaps = 26/308 (8%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
K+ R+R C L+ + K + + G P T ++ C G
Sbjct: 217 KMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEG 276
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS--CRNADLLPEV 151
V A+ ++EE+ V + ++D +G++G ++ + +++ C D++
Sbjct: 277 DVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVI--T 334
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ I+CF K G+L + +EM G + + + + + + G + + Y ++
Sbjct: 335 YNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR 394
Query: 212 RSRHLIDKEGIRAVSFTYL----------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
R G+ +TY F LG + VG+ + + + L+
Sbjct: 395 RV-------GLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV---EWNVVTYTALI 444
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM-SMFWDLHLSLEHMKHESV 320
+MK + F +M AG P+L ++N F + +M L L L +K +
Sbjct: 445 DGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL-LNELKGRGI 503
Query: 321 GPDLVTYG 328
PDL+ YG
Sbjct: 504 KPDLLLYG 511
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 2/186 (1%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ I C K+G +E +EM RG D+ T N+ I + + G L + + +K
Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK 324
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV-GLGRKDLGNLLWNLLLLSYAGNFKM 270
D A+ + K K + EF R++ G G K + ++ L+ ++ M
Sbjct: 325 DMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKP-NVVSYSTLVDAFCKEGMM 383
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ + ++ M G P+ T+ A ++ D M V ++VTY +
Sbjct: 384 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 443
Query: 331 VDAYLD 336
+D D
Sbjct: 444 IDGLCD 449
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 12/229 (5%)
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF V A + I G L E + ++KR R + + K K +
Sbjct: 191 GFGVFDALFSVLI----DLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDV 246
Query: 239 GEFLRD-VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
F +D +G G + +N+++ +++ + F M G PD T+N
Sbjct: 247 KRFFKDMIGAGARPT-VFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMID 305
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSP 356
F ++ D E MK PD++TY +++ + +L L+F P
Sbjct: 306 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKP 365
Query: 357 VVSTDPYVFEAFGK-GDFHSSSEAFLEFKR----QRKWTYRKLIAVYLK 400
V + + +AF K G + + +++ +R ++TY LI K
Sbjct: 366 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCK 414
>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Glycine max]
Length = 777
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 108/265 (40%), Gaps = 16/265 (6%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
D T C L+ G + +A+ V +L+ + S + L++AY + G + I
Sbjct: 324 DERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTT 383
Query: 138 DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
+Q+ R + ++ IS F + G+++ E ++ MV +G S T N+ I Y +
Sbjct: 384 EQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQK 443
Query: 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGRK 250
G R +DK GI+ +Y K+RK L D+ +GR
Sbjct: 444 GHFV-------RCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADM-IGRG 495
Query: 251 DLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
N ++N+L+ + K+K R F M ++G L T+N R
Sbjct: 496 VSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAE 555
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAY 334
M + PD++TY ++ Y
Sbjct: 556 DLFLQMAGKGCNPDVITYNSLISGY 580
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/296 (16%), Positives = 127/296 (42%), Gaps = 17/296 (5%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ G+K + ++ + G+ P+ + +L+ C + +++A++V +++
Sbjct: 435 SLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGR 494
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ ++ + L++A + + D++ D Y+ I+ G+ G+++
Sbjct: 495 GVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKA 554
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
E+ +M +G + D T N+ I Y++ + + Y ++K GI+ T
Sbjct: 555 EDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKIL-------GIKPTVGT 607
Query: 229 Y------LKERKFFMLGEFLRDVGLGRKDL--GNLLWNLLLLSYAGNFKMKSLQREFMRM 280
+ ++ + + ++ + + DL ++N ++ SYA + + +M
Sbjct: 608 FHPLIYACRKEGVVTMDKMFQE--MLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQM 665
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
+ G D T+N +A+ R ++ ++ MK + + P + TY ++ D
Sbjct: 666 VDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCD 721
>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
Length = 871
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 121/304 (39%), Gaps = 14/304 (4%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G P +ST +L++ G++ EA+++ +L F ++ + L+D Y ++
Sbjct: 487 GFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGA 546
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ ++ R ++ I K G +E EM + GF ++ N+ I
Sbjct: 547 QFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRG 606
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-LKERKFFMLGE--FLRDVGLGRK 250
G +TE LK + + K G+ + +FT+ + F G+ F + L +
Sbjct: 607 LCDCGRVTE------ALKLEKEMRQK-GLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQ 659
Query: 251 DLGNL----LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW 306
+G L +N+L+ Y F M +M G PD+TT+N + RM
Sbjct: 660 RIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMN 719
Query: 307 DLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFE 366
+ L+ + + PD VTY ++ L R + + + P V T +
Sbjct: 720 QAVIILDQLISAGIVPDTVTYNTMLSGICSDILDRAMILTAKLLKMGFIPNVITTNMLLS 779
Query: 367 AFGK 370
F K
Sbjct: 780 HFCK 783
>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
Length = 534
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 17/248 (6%)
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY-- 152
+EAQ ++ L F V V + L+ + R G +E S+ ++ + A + P VY
Sbjct: 234 AVEAQSFFDNL-KHKFEPDVIVYTSLVHGWCRAGDISEAESVFREM--KMAGISPNVYTY 290
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
S I + GQ+ + EM+ G + +S T N I + R G ++ Y ++KR
Sbjct: 291 SIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKR 350
Query: 213 SRHLIDKEGIRAVSFTYLKER--KFFMLGEFLRDVG-LGRKDL--GNLLWNLLLLSYAGN 267
R D +++ +L E K LGE ++ + + + D +N + A +
Sbjct: 351 LRCAAD-----LITYNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKS 405
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVT 326
+ R F RM E G P+ T+NI F+ + D+ L + M E V P+ T
Sbjct: 406 QDVNGAHRMFARMKEVGCKPNTVTYNILMRMFA-VPKSADMIFKLKKEMDEEEVEPNFNT 464
Query: 327 YGCVVDAY 334
Y ++ Y
Sbjct: 465 YRELIALY 472
>gi|410110073|gb|AFV61116.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
virgata]
Length = 424
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/353 (19%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G++
Sbjct: 59 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVM 118
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 119 PNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 178
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N Y+ + +GK
Sbjct: 179 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGK 238
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 239 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVL 298
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L ++ K N+ + + AG +++ F +
Sbjct: 299 YQTMXVAYERAGLVAHAKRLLHEL----KSPDNIPRDTAIHILAGAGRIEEATYVFRQAI 354
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 355 DAGEVKDITVFERMIHLFSKYKKYANVIEVFDKMRGLGYFPDSNVIALVLNAY 407
>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
Length = 661
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 132/343 (38%), Gaps = 19/343 (5%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P AL+ Y G + A+ V +E+ S L+DAY R G + +
Sbjct: 290 PRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARIL 349
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ ++ V+SR ++ F +G+ + L+EM + G D N I + +
Sbjct: 350 LKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGK 409
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGR 249
+ L A+ R++ +EGI T+ K + E ++
Sbjct: 410 YNCLGHAMDAFDRMR-------EEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESN 462
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
LG +N+++ + + ++ M E G P++ T+ + R F +
Sbjct: 463 CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAV 522
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR---NLDFGLSKMNLDDSPVVSTDPYVFE 366
+E MK + + P Y +V+AY + L N+ + L+ S VV +
Sbjct: 523 DCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNS--LIN 580
Query: 367 AFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRNQIF 409
AFG+ + + + L+F ++ + L K L R + F
Sbjct: 581 AFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQF 623
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/268 (18%), Positives = 98/268 (36%), Gaps = 14/268 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + + G+ PD ++ + + A ++ + V + L+D
Sbjct: 381 AFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLID 440
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A+ + G + I + D++ N L Y+ I+ G++ + E +E L EM +G
Sbjct: 441 AHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVP 500
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF----ML 238
+ T + Y R G E +K +G++ Y + +
Sbjct: 501 NIITYTTLVDVYGRSGRFKEAVDCIEAMK-------ADGLKPSPTMYHALVNAYAQRGLA 553
Query: 239 GEFLRDVGLGRKD---LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
L V R D ++ N L+ ++ + ++ M E G PD+ T+
Sbjct: 554 DHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTL 613
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPD 323
A R+ F + + E M PD
Sbjct: 614 MKALIRVEQFEKVPVIYEEMITSGCAPD 641
>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
Length = 715
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%)
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+GQLE LK+M G D T + I YY + G TE + + R D
Sbjct: 203 KGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYT 262
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
R + Y + + + L + L + ++N+L+ +YA N + F+ M
Sbjct: 263 YRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMR 322
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ GF P++ T+ + D M E + PD++T+ ++
Sbjct: 323 QKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLI 372
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 142/338 (42%), Gaps = 36/338 (10%)
Query: 23 QTHPKNGDLARKIIRY--RKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+ + KN L + + + +Q+GF V ++++ L + + A + + SEGL
Sbjct: 303 RAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLS 362
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T +L+ G + + + E+++ + L+ +MD+ + G E
Sbjct: 363 PDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDF 422
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
DQ+ + + P+V Y+ I + G+++ L MVS G D+ T +A + Y
Sbjct: 423 FDQII--HVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGY 480
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------------LKERKFFMLGEF 241
+ G + + Y R + K+ ++ + TY + R+F+M
Sbjct: 481 CKNGRVDDALALY------REMFSKD-VKPNAITYNIILHGLFHAGRVVAAREFYMK--- 530
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ D G+ LG +N++L N + R F + F ++ TFNI V +
Sbjct: 531 IVDSGI---QLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLK 587
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
+ D + + PD + YG ++ +++++ L
Sbjct: 588 VGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGL 625
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 111/275 (40%), Gaps = 12/275 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + +++ G PD T L+ YA G +++ + ++ L V + L+
Sbjct: 244 ARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIR 303
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
AY + ++ ++ + R P V Y+ I K G++E + +MVS G
Sbjct: 304 AYAKNETLDKAMTAF--IEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGL 361
Query: 181 SVDSATGNAFIIYYSRFGSLTEMET-AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
S D T + I G ++E ++ + R H + + + + KE +
Sbjct: 362 SPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIH-PNAIFLNTIMDSLCKEGRVLEAH 420
Query: 240 EF---LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
+F + VG+ + D+ + + +L+ Y + KM + RM G PD T++
Sbjct: 421 DFFDQIIHVGV-KPDV--VSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALL 477
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ + D M + V P+ +TY ++
Sbjct: 478 NGYCKNGRVDDALALYREMFSKDVKPNAITYNIIL 512
>gi|218192673|gb|EEC75100.1| hypothetical protein OsI_11265 [Oryza sativa Indica Group]
Length = 588
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/302 (19%), Positives = 122/302 (40%), Gaps = 39/302 (12%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P T L+L +G A+ +++E+L + ++ + L+ AY R G ++ +
Sbjct: 145 PKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRL 204
Query: 137 IDQVSCRNADLLPEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ + P+VY S I + ++++ K+M R + ++ T N + Y
Sbjct: 205 LADMKASPV-CQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGY 263
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
R G L +ME +L L D + D+
Sbjct: 264 GRAGRLDDMEK-------------------------------VLSAML-DSTTSKPDVWT 291
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ N++L + +++S+++ + + G P+ T NI A+ + M+ + +E+
Sbjct: 292 M--NIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEY 349
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGK-GD 372
M+ + T+ V++A+ D +N++ ++M + P T + FG G
Sbjct: 350 MRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFGNAGL 409
Query: 373 FH 374
FH
Sbjct: 410 FH 411
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 76/351 (21%), Positives = 136/351 (38%), Gaps = 83/351 (23%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA----------QVVWE 103
LGR +P A L + + +G P AL+ Y NG + +A V
Sbjct: 157 LGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQP 216
Query: 104 ELLSSSFVLSVQVLS---DLMDA-----------------------YGRIGCFNE----I 133
++ + S ++ V + D++DA YGR G ++ +
Sbjct: 217 DVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVL 276
Query: 134 ISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+++D + + P+V++ I S FG +GQ+E ME ++ G ++ T N I
Sbjct: 277 SAMLDSTTSK-----PDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILI 331
Query: 192 IYYSR-------------------------FGSLTEMETAYGRLKRSRHLIDK---EGIR 223
Y + F ++ E G K H ++ EG++
Sbjct: 332 GAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMK 391
Query: 224 AVSFTYLK-ERKFFMLGEFLRDVGLGR--KDLG----NLLWNLLLLSYAGNFKMKSLQRE 276
+ T+ F G F + VG+ + + LG N +L++ + ++R
Sbjct: 392 PDTKTFCCLINGFGNAGLFHKVVGMVKLAERLGVPMDTTFHNAVLMACVKAEDLMEMERV 451
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
FMRM + PD TT++I A+ + M +++ L+ V DLV Y
Sbjct: 452 FMRMKQIQCVPDATTYSILVGAYRKEGMTDKIYV-LQQENPTLVPTDLVHY 501
>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 126/325 (38%), Gaps = 38/325 (11%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
P A L+ V+ GL PD T L+ + + +A V+EE+++S + +
Sbjct: 116 PGSAFDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNA 175
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
++ +GR G + + ++ + Y+ + F K+G + +E +E+V G
Sbjct: 176 MVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAG 235
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
F D T N I Y + G L Y ++ D AV++T L +
Sbjct: 236 FKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPD-----AVTYTVLID------- 283
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
LG+ D +S AG M++AG P L TF+ A+
Sbjct: 284 ------SLGKMD---------RISDAGKV--------LEEMADAGLKPTLVTFSALICAY 320
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS--PV 357
++ + + HM V PD + Y ++D R L L + ++D P
Sbjct: 321 AKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKL-MALYQTMMNDGYRPD 379
Query: 358 VSTDPYVFEAFGKGDFHSSSEAFLE 382
+ + A KG+ + EA ++
Sbjct: 380 NALYQVMLAALAKGNEYDEIEAVVQ 404
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 111/271 (40%), Gaps = 21/271 (7%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS-------RAIS-CFGKQGQ 164
+VQV + +M Y R G F+++ ++D + R +L P++ S RA S C
Sbjct: 62 TVQVFNAMMGVYARSGRFDDVRQLLDAM--RGQELEPDLVSFNTLINARAKSGCLAPGSA 119
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+L L E+ G D T N I S+ +L + + + S D A
Sbjct: 120 FDL----LLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNA 175
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+ + + K R++ + +N LL ++A +++R + AG
Sbjct: 176 MVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAG 235
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVVDAYLDKRLGRNL 343
F D T+N + +M DL L L + M+ PD VTY ++D+ ++ R
Sbjct: 236 FKKDGITYNTMIHMYGKMGRL-DLALGLYDEMRALGCTPDAVTYTVLIDSL--GKMDRIS 292
Query: 344 DFGLSKMNLDDS---PVVSTDPYVFEAFGKG 371
D G + D+ P + T + A+ KG
Sbjct: 293 DAGKVLEEMADAGLKPTLVTFSALICAYAKG 323
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 52/279 (18%), Positives = 104/279 (37%), Gaps = 36/279 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V GR K A ++ + +G PD T +L+ +A G + V EEL+ +
Sbjct: 175 AMVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRA 234
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F + ++ YG++G + + + D++ Y+ I GK ++
Sbjct: 235 GFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDA 294
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
L+EM G T +A I Y++ G E + + S G++
Sbjct: 295 GKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVAS-------GVKPDRLA 347
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
YL ++L A + M+ L + M G+ PD
Sbjct: 348 YL----------------------------VMLDIIARSGDMRKLMALYQTMMNDGYRPD 379
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHE-SVGPDLVT 326
+ + A ++ + + ++ ++ M+ + P LV+
Sbjct: 380 NALYQVMLAALAKGNEYDEIEAVVQDMEVVCQMNPQLVS 418
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 119/284 (41%), Gaps = 20/284 (7%)
Query: 60 PHLAHQLVNTVKSEGL-LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
P AHQL++ G+ L S+ ++ Y A+ + L + ++ +
Sbjct: 570 PETAHQLMDEAVQSGISLNILSSRVTMIEAYGKIKLWQHAENFVKGLKQEPSI-DRRIWN 628
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS-----RAISCFGKQGQLELMENTLK 173
L+ AY G + ++ D + + LP + S RA+ G+ +L ++ L+
Sbjct: 629 ALIHAYAESGLYEHARAVFDIMIEKGP--LPTIDSVNGMMRALIIDGRLDELYVIVQELQ 686
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
+M GF + +T + +++ G + E+ Y +K + +L + R++ + +
Sbjct: 687 DM---GFKISKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNK 743
Query: 234 KF----FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
++ M+ E R G DL L N LLL Y GN + + EAG P+
Sbjct: 744 RYRDVELMVVEMER-AGF-EPDLTIL--NTLLLMYTGNGNFDKTVEVYHSILEAGLEPNE 799
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
T+N V +SR + L M + + P L +Y ++ A
Sbjct: 800 DTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAA 843
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A QL+ ++K +G+ P +T+ LM Y G EA+ V L SSS +S S + +
Sbjct: 888 AEQLLASMKEDGIEPTIATMHILMTSYGTAGHPDEAEKVLNSLKSSSLEVSTLPYSTVFN 947
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYS---RAISCFGKQGQLELMENTLKE 174
AY + G +N I+ + ++ +V++ RA S + L+ N+L++
Sbjct: 948 AYLKNGDYNLGITKLLEMKADGVKPDHQVWTCFIRAASLCERTADAILLLNSLRD 1002
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 131/299 (43%), Gaps = 28/299 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL-S 107
S+V+ L R K A ++V +K +G+ PD T AL+ + N V EA +++E+L S
Sbjct: 118 SVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTS 177
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
SS+ V + L+D + + G + + ++ + R +P V YS + K G L
Sbjct: 178 SSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKC--VPNVVTYSSLLHGLCKAGDL 235
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA- 224
+ + + M S+G + T + +L A ++ +R L+D+
Sbjct: 236 DQALDLFRRMTSKGCVPNVVT----------YTTLIHGLCAAHKVDAARLLMDEMTATCC 285
Query: 225 ----VSFTYLKERKFFMLG------EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
VS+ L + + LG + +++ + + L+ + +++ +
Sbjct: 286 PPDTVSYNALLD-GYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEAR 344
Query: 275 REFMRM-SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
M + AG PD+ T++I +SR F + ++ M +V P+ VTY ++D
Sbjct: 345 FLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLID 403
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 4/150 (2%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFV-L 112
LGR ++ A QL + ++ LPD T L+ + N + EA+ + E + +++ +
Sbjct: 302 LGRIEE---AKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDP 358
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
V S ++ Y R F E I ++ RN YS I K G+++ L
Sbjct: 359 DVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVL 418
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
K MV++ T N+ I R G + E
Sbjct: 419 KNMVNKRVEPSVGTFNSVIGALCRLGDMDE 448
>gi|242094172|ref|XP_002437576.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
gi|241915799|gb|EER88943.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
Length = 429
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 120/307 (39%), Gaps = 39/307 (12%)
Query: 29 GDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC 88
G++ R+ IR G+ L D G KK A LV ++ G+ D L+
Sbjct: 104 GEMRRRGIRL-DTAGYSMLVRLYRDNGMWKK---AIDLVMEMQEVGVELDVKIYSGLIDT 159
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ G + +A+ V++++ + + + L+ + R+G + +
Sbjct: 160 FGKYGQLADARRVFDKMRAEGIKPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPD 219
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
P+++ IS G+QG+ + ++ M +RGF A + L ++ YG
Sbjct: 220 PKIFVMIISRLGEQGKWDEIKKLFDGMKNRGFKESGAV----------YAVLVDIYGQYG 269
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+ +R I +RA + L R F +L GL + + N+L L
Sbjct: 270 HFRDARECI--AALRAENMQ-LSPRVFCVLANAYAQQGLCEQTV-----NVLQL------ 315
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
M E GF P+L N+ AF + +H+K + PD+VTY
Sbjct: 316 -----------MEEEGFEPNLVMLNLLINAFGTAGRHLEALAVFQHIKDSGMSPDVVTYT 364
Query: 329 CVVDAYL 335
++ ++
Sbjct: 365 TLMKTFM 371
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 76/183 (41%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + +++ EG+ PD ++ G E + +++ + + F S V + L+D
Sbjct: 204 ALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMKNRGFKESGAVYAVLVD 263
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
YG+ G F + I + N L P V+ + + +QG E N L+ M GF
Sbjct: 264 IYGQYGHFRDARECIAALRAENMQLSPRVFCVLANAYAQQGLCEQTVNVLQLMEEEGFEP 323
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
+ N I + G E + +K S D + T+++ +KF + E
Sbjct: 324 NLVMLNLLINAFGTAGRHLEALAVFQHIKDSGMSPDVVTYTTLMKTFMRAKKFEKVSEVY 383
Query: 243 RDV 245
R++
Sbjct: 384 REM 386
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 128/314 (40%), Gaps = 16/314 (5%)
Query: 25 HPKNGDL--ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
+ K GDL A+ + R V S++ R+ A +L ++ EG+ PD T+
Sbjct: 190 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 249
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
A++ C A + E + V E + + + V + LMD Y + G E + ++
Sbjct: 250 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 309
Query: 143 RNA---DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199
++ + + YS+ +C+ + L L L+E + FS D T + + +
Sbjct: 310 KDIISWNTIIGGYSK--NCYANEA-LSLFNLLLEE---KRFSPDERTVACVLPACASLSA 363
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
+ +G + R+ + D+ ++ Y K + D+ KDL + W +
Sbjct: 364 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI--ASKDL--VSWTV 419
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
++ Y + K F +M +AG D +F A S + + M+HE
Sbjct: 420 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 479
Query: 320 -VGPDLVTYGCVVD 332
+ P + Y C+VD
Sbjct: 480 KIEPTVEHYACIVD 493
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 98/444 (22%), Positives = 169/444 (38%), Gaps = 70/444 (15%)
Query: 27 KNGDLARKIIRYRKQEG-------FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDN 79
++ DL K + + G V +L++ + K L++ ++ G P++
Sbjct: 210 RDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPND 269
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
T L+ + G +A+ + E+L + +S + L+ Y G E +S+ ++
Sbjct: 270 VTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEE 329
Query: 140 VSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199
+ + A Y+ I K G++ L +M++ D + N I Y R G+
Sbjct: 330 MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGN 389
Query: 200 LT-------EMETAY------------------GRLKRSRHL---IDKEGIRA--VSFTY 229
L E+ + Y G L+ ++ L + EGI V++T
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI 449
Query: 230 L-----KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA------GNFKMKSLQREFM 278
L K M EF ++ L L L SYA G K+ R F
Sbjct: 450 LVNGSCKMGSLSMAQEFFDEM---------LHEGLELDSYAYATRIVGELKLGDTSRAFS 500
Query: 279 ---RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
M GF PDL +N+ ++ + L+ M + V PD VTY ++ A+L
Sbjct: 501 LQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHL 560
Query: 336 DK---RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQ----RK 388
+ R GR + + + L S VV+ + GKG + F E + +
Sbjct: 561 ENGRLRKGREIFYEMLSKGLTPS-VVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNV 619
Query: 389 WTYRKLIAVYLKKQLRRNQIFWNY 412
TY LI K +RR +N+
Sbjct: 620 ITYNSLINGLCK--VRRMDQAYNF 641
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 128/312 (41%), Gaps = 41/312 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ L R+ + +A QL + +EG+ PD T L+ G + AQ ++E+L
Sbjct: 414 TLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHE 473
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN--ADLLPEVYSRAISCFGKQGQLE 166
L + + ++G + S+ +++ + DL+ +Y+ + K G LE
Sbjct: 474 GLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLI--IYNVVVDGLCKLGNLE 531
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL---IDKEGIR 223
L++MVS G D Y + S+ GRL++ R + + +G+
Sbjct: 532 EASELLQKMVSDGVIPD----------YVTYTSIIHAHLENGRLRKGREIFYEMLSKGLT 581
Query: 224 AVSFTYLK-----------ERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMK 271
TY ER F E +++ G+ L N++ +N L+ +M
Sbjct: 582 PSVVTYTVLIHGHAGKGRLERAFIYFSE-MQEKGI----LPNVITYNSLINGLCKVRRMD 636
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCV 330
F M E G P+ ++ I M W LSL + M V PD T+ +
Sbjct: 637 QAYNFFAEMVEKGIFPNKYSYTILINENCNMGN-WQEALSLYKQMLDRGVQPDSCTHSAL 695
Query: 331 VDAYLDKRLGRN 342
+ K+LG++
Sbjct: 696 L-----KQLGKD 702
>gi|255556562|ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541630|gb|EEF43179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 124/328 (37%), Gaps = 82/328 (25%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA--------------- 98
LGR +P AHQL + + EG+ P AL+ Y N EA
Sbjct: 140 LGRTGQPQRAHQLFDEMVEEGIEPTAELYTALLAAYCRNHLTDEAFSILQQMKTLPRCLP 199
Query: 99 -------------------------QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
Q + E L++ + V VLS YG+ G ++++
Sbjct: 200 DVYTYSTLLKACVDASRFELVEALYQEMGERLITPNTVTQNIVLS----GYGKAGMYDQM 255
Query: 134 ISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
++ + + + P+V++ I S FG +GQ++LME ++ S G ++ T N I
Sbjct: 256 ERVLSGM-LESTECKPDVWTMNIILSVFGNKGQIDLMEKWYEKFRSFGIEPETRTFNILI 314
Query: 192 IYY-------------------------SRFGSLTEMETAYGRLKRSRHLIDK---EGIR 223
Y S + ++ E G +K + D+ EG++
Sbjct: 315 GAYGKKRMYDKMSSVMEFMRKLQFPWTTSTYNNVIEAFAVAGDVKHMEYTFDQMRAEGMK 374
Query: 224 AVSFTYLKERKFF----MLGEFLRDVGLGRK---DLGNLLWNLLLLSYAGNFKMKSLQRE 276
A + T+ + + + + V L K +N ++ + A + ++R
Sbjct: 375 ADTKTFCCLINGYANAGLFHKVISSVQLATKFEIPENTTFYNAIISACAKAEDLMEMERV 434
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
F RM + PD TT++I A+ R M
Sbjct: 435 FKRMKDNQCQPDSTTYSIMVEAYKREGM 462
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 144/332 (43%), Gaps = 22/332 (6%)
Query: 20 PSHQTHPKNGDLARKIIRYRKQEGFVDCAS-LVEDLGRKKKPHLAHQLVNTVKSEGLL-P 77
P +T KN + +K+ R K + +V+ + + D KK+ A ++ +K + P
Sbjct: 71 PPRRTPIKN--IKKKLDRKNKAKAWVNTVTEALSDRILKKQWFQALEVFEMLKEQPFYHP 128
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
T L++ G A +++E++ + ++ + L+ AY R +E SI+
Sbjct: 129 KEGTYMKLLVLLGRTGQPQRAHQLFDEMVEEGIEPTAELYTALLAAYCRNHLTDEAFSIL 188
Query: 138 DQVSCRNADLLPEVYSRAI---SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
Q+ LP+VY+ + +C + EL+E +EM R + ++ T N + Y
Sbjct: 189 QQMKTL-PRCLPDVYTYSTLLKACVDA-SRFELVEALYQEMGERLITPNTVTQNIVLSGY 246
Query: 195 SRFGSLTEMETAY-GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG---EFLRDVGLGRK 250
+ G +ME G L+ + D + + + + + ++ E R G+
Sbjct: 247 GKAGMYDQMERVLSGMLESTECKPDVWTMNIILSVFGNKGQIDLMEKWYEKFRSFGI--- 303
Query: 251 DLGNLLWNLLLLSYAGNF---KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
+ +N+L+ +Y KM S+ EFMR + F +T+N AF+
Sbjct: 304 EPETRTFNILIGAYGKKRMYDKMSSVM-EFMR--KLQFPWTTSTYNNVIEAFAVAGDVKH 360
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
+ + + M+ E + D T+ C+++ Y + L
Sbjct: 361 MEYTFDQMRAEGMKADTKTFCCLINGYANAGL 392
>gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 528
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 31/229 (13%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VYS+ IS GK+GQ+ + EM + G D++ NA I
Sbjct: 129 VYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALI------------------- 169
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ HL K+ +A+ +L F + G+ R + +N+L ++A K+
Sbjct: 170 --TAHLHSKDKAKAL---------VKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKV 218
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ F + E+ D+ T+N A+ + ++ L L MK + PD++++ +
Sbjct: 219 DQVNTLFKDLDESVVSADIYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDIISFNLL 278
Query: 331 VDAYLDKRLGRNLDFGL-SKMNLDDSPVVSTDPYVFEAFGKGDFHSSSE 378
+D+Y K+L ++ S + + P + T + +GK +E
Sbjct: 279 IDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARLREKAE 327
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 135/335 (40%), Gaps = 23/335 (6%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV----VWE 103
+ L+ +G+K + +A L + +++ G PD S AL+ + ++ +A V +E
Sbjct: 131 SKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYFE 190
Query: 104 ELLS----SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159
++ +++ +L+ ++ N + +D+ S +AD+ Y+ + +
Sbjct: 191 KMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDE-SVVSADIY--TYNGVMDAY 247
Query: 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
GK G ++ ME L M S D + N I Y + +ME + L RS+
Sbjct: 248 GKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTL 307
Query: 220 EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG----NLLWNLLLLSYAGNFKMKSLQR 275
++ Y K R L E +V KD+G + L++ Y G+ S R
Sbjct: 308 PTFNSMITNYGKAR----LREKAEEVFRKMKDMGYDPSYVTCESLIMMY-GHCDCVSKAR 362
Query: 276 E-FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
E F M +G ++T N + + + L E + V PD TY + AY
Sbjct: 363 EIFDGMVNSGKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYKAY 422
Query: 335 LDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFG 369
+ + N+D + ++ + +A G
Sbjct: 423 T--KADKKELLEKLLKNMDKAGIIPNKRFFLDALG 455
>gi|410110105|gb|AFV61132.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
aristata]
Length = 382
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 136/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L+ +K+ G++
Sbjct: 13 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVM 72
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ + L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 73 PNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 132
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 133 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 192
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 193 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQIL 252
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 253 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 308
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 309 DAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAY 361
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 113 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 172
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 173 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 232
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 233 RAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 292
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 293 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVVEVFDKMRGLGY 347
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 348 FPDSDVIAIVLNAYGKLQEF 367
>gi|414586026|tpg|DAA36597.1| TPA: hypothetical protein ZEAMMB73_327514 [Zea mays]
Length = 549
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/332 (18%), Positives = 136/332 (40%), Gaps = 15/332 (4%)
Query: 30 DLARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A +++R+ G V ++L+ L + A +++ + EG P+ T +
Sbjct: 151 DAAYEVVRWMTANGVALDVVTYSTLISGLCSAGRVAEALGVLDLMLEEGCQPNAHTYTPI 210
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ Y +G + EA+ + E ++++ F S + L++A + FNE+ +++++ S +
Sbjct: 211 LHAYCTSGMIHEAKELLETMIAAGFAPSTATYNVLVEALCKACAFNEVDALLEESSAKGW 270
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
YS + K G++ + +M+S G + T N + R + +
Sbjct: 271 TPDTITYSTYMDGLCKDGRVHKSFALVDKMLSVGLRPNEITLNILLDGVCRRSTAWAAKC 330
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
++ V ER++ + + D+ +K + W L ++ ++
Sbjct: 331 LLECSAEIGWHVNVVNYNTVMRRLCDERRWLSVVKLFVDIV--KKGIAPNSWTLSIVIHS 388
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
K+ L + F D+ T+N + + ++ +L L HM + + P+
Sbjct: 389 -LCKLGRLHEALCLIGSEEFVADVVTYNTLIRYLNFLGKAYEAYLLLHHMIEKGIAPNDT 447
Query: 326 TYGCVVDAYLDKR--------LGRNLDFGLSK 349
TY ++D + L R ++ GLSK
Sbjct: 448 TYSLLIDCLCKEGKFLVALGCLNRCMEGGLSK 479
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/383 (21%), Positives = 158/383 (41%), Gaps = 42/383 (10%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
V+ ++L L K A+ ++ + S+G +PD ST ++ N V A +++EE
Sbjct: 446 VNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEE 505
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
+ S+ V V + L+D++ ++G + D++ Y+ I + K +
Sbjct: 506 MKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARK 565
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL-------- 216
+ + M+S G + T A I + + G + + Y R++ + +
Sbjct: 566 MSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFK 625
Query: 217 IDKEGIRAVS-FTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
ID IR + FTY K K + L + + + +++++ L+ +
Sbjct: 626 IDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVG 685
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNI---RAVAFSRMSMFWDLHLS-LEHMKHESVGPDL 324
K+ Q F +MSE G+ P++ T++ R R+ DL L L M S P++
Sbjct: 686 KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRL----DLALKVLSRMLENSCAPNV 741
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS----PVVSTDPYVFEAFGKGDFHSSSEAF 380
+ Y ++D ++G+ D M++ + P V T + + FGK +
Sbjct: 742 IIYTEMIDGLC--KVGKT-DEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKA---GKVDKC 795
Query: 381 LEFKRQRKW--------TYRKLI 395
LE RQ TYR LI
Sbjct: 796 LELMRQMGAKGCAPNFVTYRVLI 818
>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
filifolia]
Length = 439
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 58 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 117
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 118 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 177
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 178 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 237
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 238 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 297
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 298 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 353
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ ++ + M+ PD V++AY
Sbjct: 354 DAGEVKDITVFERMIHLLSKYKKXSNVVEVFDKMRGLGYFPDSDVIAIVLNAY 406
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 158 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 217
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 218 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 277
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 278 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 337
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 338 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KXSNVVEVFDKMRGLGY 392
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 393 FPDSDVIAIVLNAYGKLQEF 412
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 73 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 132
Query: 337 KR 338
+
Sbjct: 133 NK 134
>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 706
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR K+ + L +K +G LPD T L+ + G V EA ++EEL +S
Sbjct: 294 LGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPD 353
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
+ + L++ G+ G +E + I + L P+V YS I CFGK ++E+
Sbjct: 354 IISYNSLINCLGKNGDLDE--AHIRFREMQEKGLNPDVVTYSTLIECFGKTDKVEMACRL 411
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM++ G + T N + R G E Y +LK ++G+ S TY
Sbjct: 412 FDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVDLYAKLK-------QQGLTPDSITY 462
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/329 (16%), Positives = 137/329 (41%), Gaps = 14/329 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + +K A ++ +K + PD T ++ G + E+ ++EE+L+
Sbjct: 83 LLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESLALFEEMLNKG 142
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
++ + ++ A ++ I + ++ +N YS ++ +GQL ++
Sbjct: 143 CSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVILTLLAAEGQLHKLD 202
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
++ +SR + ++ + + ++ G +E + + D++ ++ +
Sbjct: 203 KVVE--LSRKY-MNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHDRGDRDACLSMLESL 259
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K + L + + +++N + + ++ L + +M G PD+
Sbjct: 260 CNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDI 319
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T+NI +F R ++ E +++ PD+++Y +++ LG+N D +
Sbjct: 320 FTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINC-----LGKNGDLDEAH 374
Query: 350 MNLDD------SPVVSTDPYVFEAFGKGD 372
+ + +P V T + E FGK D
Sbjct: 375 IRFREMQEKGLNPDVVTYSTLIECFGKTD 403
>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
Length = 551
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 117/293 (39%), Gaps = 14/293 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ R+K +++ +++EG+ P T L+ + + + + V+EE+ S
Sbjct: 183 SLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSK 242
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ V S +++AY R G + D+ + Y I+ F K GQ+E
Sbjct: 243 NLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAA 302
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
E + +M RG ++ N I Y R + + + +++K GI +T
Sbjct: 303 EMLVTDMQVRGVGINQIVFNTMIDGYCR-------KNMVDKALEIKMIMEKMGIELDVYT 355
Query: 229 Y-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
Y + + LR + ++ + L+ + M +R F M+
Sbjct: 356 YNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMA 415
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G P L T+N+ + + + + M+ + + PD+ +Y +V +
Sbjct: 416 GNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGH 468
>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
[Acanthamoeba castellanii str. Neff]
Length = 559
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 125/310 (40%), Gaps = 43/310 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSE-GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++V G+++ LV ++++ GL DN T A++ ++ G V +A ++ + +
Sbjct: 211 AMVHSYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAA 270
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ S+ + ++ G G +E++ +D++ VY+ I+ FGK +
Sbjct: 271 TGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNTIINAFGKARNIHS 330
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
M +T K M G + D T N I +++ G E E Y +KR EG++ +
Sbjct: 331 MMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKR-------EGLQPTMY 383
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
T L+ +Y + + + R RM + G P
Sbjct: 384 TIAS----------------------------LMDAYTRADQFEKVLRLISRMKKEGRAP 415
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSL-EHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFG 346
D FN+ + RM + L MK + + + V++A+ R G NLD
Sbjct: 416 DNVVFNLLIDTYGRMGKPEEAEKVLCGAMKEYGIALETNNFTSVIEAW--ARNG-NLDKA 472
Query: 347 ---LSKMNLD 353
L +MN D
Sbjct: 473 EEWLHRMNTD 482
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 109/297 (36%), Gaps = 14/297 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDN------STLCALMLCYANNGFVLEAQVVWE 103
L+E +K+P LA QL + +++E + L+ Y G V
Sbjct: 63 LIEQCFEEKRPDLATQLYDHLRAETTTTQAAAPVPLAVFDVLLQGYGRAGDRQRLAQVQR 122
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGK 161
++ + + L+DA+G+ G + + + R L P V Y+ I+ GK
Sbjct: 123 DMREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWEDM--REQGLRPNVVVYTSVIATLGK 180
Query: 162 QGQLELMENTLKEM---VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL-I 217
G + ME T EM G + T NA + Y + + +ME R++ L +
Sbjct: 181 LGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYGQQQMMDKMEALVERMRADPGLGL 240
Query: 218 DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277
D AV + + + E + W +L + + R
Sbjct: 241 DNFTHSAVVAAWSRAGRVDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTL 300
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+M G P +N AF + + + + M+ + V D+ TY ++D +
Sbjct: 301 DKMKRLGVKPSTAVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTW 357
>gi|410110089|gb|AFV61124.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
macropoda]
Length = 427
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 135/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L+ +K+ G++
Sbjct: 59 ELSRKLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVM 118
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ + L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 119 PNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 178
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ +GK
Sbjct: 179 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGK 238
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 239 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQIL 298
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 299 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 354
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F S+ + ++ + M+ PD V++AY
Sbjct: 355 DAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAY 407
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 51/260 (19%), Positives = 104/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 159 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 218
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + + YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 219 RKNIEQNVVTYNSMXMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 278
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 279 RAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 338
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 339 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVVEVFDKMRGLGY 393
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 394 FPDSDVIAIVLNAYGKLQEF 413
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 121/297 (40%), Gaps = 11/297 (3%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
CA L L R ++ A V ++ P S L+ A A + ++
Sbjct: 13 CADLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQ 72
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRAISCFGKQGQ 164
+ + V + + L+ A R G + ++++D+V SC D++ +Y+ I CFGK G
Sbjct: 73 EVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIV--LYNVCIDCFGKAGN 130
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+++ E+ ++G D + + I + G L E E + +++ R +
Sbjct: 131 VDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNT 190
Query: 225 VSFTYLKERKF---FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ Y +F + L E LR+ G + +N +L K+ F M
Sbjct: 191 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVS---FNSILTCLGKKRKVDEALSLFEVMK 247
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+ P+ +T+NI + + L+ M+H S+ P+L+T +VD R
Sbjct: 248 KDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKAR 303
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 33/301 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL--MLCYANNGFVLEAQVVWEELL 106
S++ LG+K+K A L +K + P++ST + MLC G V EA + +E+
Sbjct: 225 SILTCLGKKRKVDEALSLFEVMKKDAE-PNSSTYNIIIDMLCLG--GRVEEAYRILDEME 281
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+S ++ ++ ++D + E I + S R + Y I GK+GQ++
Sbjct: 282 HASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVD 341
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR--- 223
++M+ G NA + Y+ SL +GR K H + KE IR
Sbjct: 342 EAYRLFEKMLDAGH-------NANPVVYT---SLIRNFFIHGR-KEDGHKVFKELIRRGC 390
Query: 224 ----AVSFTYL-------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
+ TY+ + K M+ E +R G D+ + +++L+ + +
Sbjct: 391 KPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGF-LPDVRS--YSILIHGLTKAGQARE 447
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
F M + GF D +N F + + LE MK + V P + TYG +VD
Sbjct: 448 TSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVD 507
Query: 333 A 333
Sbjct: 508 G 508
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 48/239 (20%)
Query: 35 IIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
I KQ+GF A ++V+ + K H A++++ +K + + P +T A++ A
Sbjct: 451 IFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLA 510
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
+ EA +++EE S L+V + S L+D +G++G +E I++++ + L P
Sbjct: 511 KIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG--LTPN 568
Query: 151 VYS---------------RAISCFGKQGQLELMENTL----------------------K 173
VY+ A+ CF +++ NT +
Sbjct: 569 VYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQ 628
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
+M +G + T I ++ G++T+ + + R K + + D A SF L E
Sbjct: 629 DMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD-----AASFNALIE 682
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 65/315 (20%), Positives = 130/315 (41%), Gaps = 22/315 (6%)
Query: 32 ARKIIRYRKQEGF-VDC---ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A KI Q G DC SL++ LG+K + A++L + G + +L+
Sbjct: 308 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 367
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ +G + V++EL+ + +L+ MD + G + I + + R+
Sbjct: 368 NFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI--RSYGF 425
Query: 148 LPEVYSRAISCFG--KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS------ 199
LP+V S +I G K GQ N M +GF++D+ NA + + + G
Sbjct: 426 LPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYE 485
Query: 200 -LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
L EM+ + + + +G+ + + + +ML E + G+ +L +L++
Sbjct: 486 ILEEMKEKCVQPTVATYGAIVDGLAKID----RLDEAYMLFEEAKSKGI---ELNVVLYS 538
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
L+ + ++ M + G P++ T+N A + + + + MK
Sbjct: 539 SLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEM 598
Query: 319 SVGPDLVTYGCVVDA 333
P+ TY +++
Sbjct: 599 KCPPNTYTYSILING 613
>gi|410110145|gb|AFV61152.1| pentatricopeptide repeat-containing protein 123, partial [Nashia
inaguensis]
Length = 433
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/334 (20%), Positives = 130/334 (38%), Gaps = 43/334 (12%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V +++ G+ K A L++ +K+ G++P+ ++ L+ Y N
Sbjct: 74 KRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 133
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--------------------------- 128
LEA V+ E+ +L + + ++D YG++G
Sbjct: 134 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPSVVSYNTL 193
Query: 129 --------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
F E I + + +N + Y+ + +GK + E N ++EM SRG
Sbjct: 194 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGI 253
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+S T + I + + G L + +L+ S ID+ + + Y +
Sbjct: 254 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKR 313
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L + L R D N+ + + AG +++ F + +AG D+T F S
Sbjct: 314 LLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAIDAGXVKDITVFERMIHLLS 369
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ + + PD V++AY
Sbjct: 370 KYKKYSNVVEVFDKXRGLGYFPDSDVIAIVLNAY 403
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 70 FSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 129
Query: 337 KR 338
+
Sbjct: 130 NK 131
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 76/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 4 RQRALSPDRYTYSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKLCDY 63
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 64 SKAISIFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 123
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 124 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 183
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P +V+Y ++ Y D L
Sbjct: 184 EPSVVSYNTLLRVYGDAEL 202
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 17/228 (7%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y+ I K ++ E ++M+ +G D+ T N I Y G E +
Sbjct: 240 TYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKE-------V 292
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFM------LGEFLRDVGLGRKDLGNL-LWNLLLLS 263
R + G++ +TY + FL D + + N+ ++ +L+
Sbjct: 293 VRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHG 352
Query: 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
YA + + M E G PD FNI A+++ +M + MK + + PD
Sbjct: 353 YATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPD 412
Query: 324 LVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
+V YG ++DA +LGR +D + K N + V+ + +VF + G
Sbjct: 413 VVNYGALIDALC--KLGR-VDDAVLKFNQMMNEGVAPNIFVFNSLVYG 457
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 66/355 (18%), Positives = 135/355 (38%), Gaps = 42/355 (11%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+++ + + GL PD T +L+ NNG EA+ +++ ++ +V + L+ Y
Sbjct: 294 RMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGY 353
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
G +E+ +++ + +++ + + K+ ++ + +M +G S D
Sbjct: 354 ATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDV 413
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY--------------- 229
A I + G + + + ++ EG+ F +
Sbjct: 414 VNYGALIDALCKLGRVDDAVLKFNQMM-------NEGVAPNIFVFNSLVYGLCTVDKWEK 466
Query: 230 LKERKFFMLGEFLR-DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
KE F ML + +R DV + +N +L + ++ QR M G P
Sbjct: 467 AKEFYFEMLNQGIRPDV---------VFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPG 517
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD-FGL 347
+ ++ + + SL+ M + PD TY ++ Y R GR D +G+
Sbjct: 518 VISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYC--RAGRIDDAYGV 575
Query: 348 SKMNLDD--SPVVSTDPYVFEA-FGKGDFHSSSEAFLEF----KRQRKWTYRKLI 395
+ L + +P V T + F F + E +L K+ W Y ++
Sbjct: 576 FREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIIL 630
>gi|410110097|gb|AFV61128.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
rugosa]
Length = 348
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 129/334 (38%), Gaps = 43/334 (12%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V +++ G+ K A L+ +K+ G++P+ + L+ Y N
Sbjct: 14 KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKF 73
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--------------------------- 128
LEA V+ E+ +L + + ++D YG++G
Sbjct: 74 LEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 133
Query: 129 --------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
F E I + + +N + Y+ + +GK + E N ++EM SRG
Sbjct: 134 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGI 193
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+S T + I + + G L + +L+ S ID+ + + Y +
Sbjct: 194 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKR 253
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L + L R D N+ + + AG +++ F + +AG D+T F S
Sbjct: 254 LLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLS 309
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ + M+ PD V++AY
Sbjct: 310 KYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAY 343
>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
Length = 760
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 114/289 (39%), Gaps = 7/289 (2%)
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID--QVSCRNADLLPEVYSRA 155
AQ++++ + + F +V V S L+ AYGR G + + I + +V C+ +L+ VY+
Sbjct: 140 AQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMKVVCK-PNLV--VYNAV 196
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I K G +EM+ +G S D T N I R E + + ++
Sbjct: 197 IDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGI 256
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK-DLGNLLWNLLLLSYAGNFKMKSLQ 274
D + TY + + + + + + + ++ ++ YA
Sbjct: 257 ARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAI 316
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F M PD +N +R+ F + H M+ D+VTY ++D+Y
Sbjct: 317 ALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSY 376
Query: 335 LDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+ R L +M SP + T + +A+ K FH + A +
Sbjct: 377 GKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQ 425
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/317 (19%), Positives = 125/317 (39%), Gaps = 46/317 (14%)
Query: 27 KNGD--LARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K GD A +I R ++G + +L+ GR + ++ ++ G+ D+
Sbjct: 202 KGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDV 261
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFV-LSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
T L+ Y G + + E + SS + SV S ++D Y ++G +E I++ +
Sbjct: 262 TYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQE 321
Query: 140 VSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
+ RN ++ P+ Y+ + + G + + + M GF+ D T NA + Y +
Sbjct: 322 M--RNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGK- 378
Query: 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW 257
G+ + + L+++ R S L +
Sbjct: 379 ---------QGKFREAMSLLEEMKQRGASPNILT-------------------------Y 404
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
+ L+ +Y + + F + +AG PD+ ++ + + LE M
Sbjct: 405 SALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMAD 464
Query: 318 ESVGPDLVTYGCVVDAY 334
+ P+++TY ++DAY
Sbjct: 465 NGIRPNVITYNSLLDAY 481
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 39/312 (12%)
Query: 23 QTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
+T K+ + +I Y +++++ + H A L ++++ + PD
Sbjct: 284 ETMAKSSGIEPSVITY---------STMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICY 334
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
++ +A G EA + + + F + + L+D+YG+ G F E +S+++++
Sbjct: 335 NTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQ 394
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
R A YS I + K G +++ G D + + + GS E
Sbjct: 395 RGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDE 454
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL-- 260
A L+ + GIR TY +L + R + RK+ L + LL
Sbjct: 455 ---ALALLEE----MADNGIRPNVITYNS-----LLDAYGRQCLMVRKNFPKLRFFLLPR 502
Query: 261 ---LLSYAGNFKMKSL-------------QREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
LL + ++ +SL R F M++ G P++ TF+ A S +
Sbjct: 503 VTMLLKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCAS 562
Query: 305 FWDLHLSLEHMK 316
D LE M+
Sbjct: 563 VEDASSLLEAMR 574
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 112/284 (39%), Gaps = 24/284 (8%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + T+K +GL PD T + + G + EA + ++L V + + L+D
Sbjct: 270 ARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALID 329
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y G ++ + D++ + Y+ I +G++ +N +KEM +G
Sbjct: 330 GYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMP 389
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTYLKERKFFMLG 239
D+ T N I Y R G KR+ L+D+ +GI+ TY ++LG
Sbjct: 390 DAVTHNILINGYCRCGD----------AKRAFGLLDEMVGKGIQPTLVTYTS--LIYVLG 437
Query: 240 EFLR----DVGLGRKDLGNLL-----WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
+ R D + LL +N L+ + N + + M PD
Sbjct: 438 KRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEI 497
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
T+N + R + L+ MK + PD ++Y ++ Y
Sbjct: 498 TYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGY 541
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/328 (19%), Positives = 130/328 (39%), Gaps = 14/328 (4%)
Query: 32 ARKIIRYRKQEGF-VDC---ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
AR I + K +G DC S + L ++ + A L+ + GL+P+ T AL+
Sbjct: 270 ARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALID 329
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY---GRIGCFNEIISIIDQVSCRN 144
Y N G + +A +E++S + S+ + + A GR+G + +I R
Sbjct: 330 GYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIK-----EMRE 384
Query: 145 ADLLPEVYSRAISCFG--KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
++P+ + I G + G + L EMV +G T + I + + E
Sbjct: 385 KGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKE 444
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+ + ++++ L D A+ + + L+++ + + +N L+
Sbjct: 445 ADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQ 504
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
Y K++ ++ M G PD ++N +S+ D + M P
Sbjct: 505 GYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDP 564
Query: 323 DLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
++TY ++ + G + + L +M
Sbjct: 565 TILTYNALIQGLCKNQEGEHAEELLKEM 592
>gi|255661218|gb|ACU25778.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
Length = 426
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 125/321 (38%), Gaps = 39/321 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ G+ K A L+ +++ G++P+ + L+ Y N +EA V+ E+
Sbjct: 84 SMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLLTMYVENKKFIEALSVFAEMREI 143
Query: 109 SFVLSVQVLSDLMDAYGRIG-----------------------------------CFNEI 133
L + + ++D YG++G F E
Sbjct: 144 QCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVVSYNTLLRVYGDAELFGEA 203
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I + + +N + Y+ + +GK + E N ++EM +RG ++ T + I
Sbjct: 204 IHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNTITYSTIISI 263
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
+ + G L + +L+ S ID+ + + TY + L + L R D
Sbjct: 264 WGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYERAGLVAHAKRLLHE--LKRPD-- 319
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
N+ + + AG +++ F + EAG D+T F FS+ + ++ +
Sbjct: 320 NIPRDTAIHILAGAGRIEEATWVFRQAIEAGEVKDITVFEHMIDLFSKYKKYSNIIEVFD 379
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
M+ PD V++AY
Sbjct: 380 KMRGIGYFPDSRVIALVLNAY 400
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 71/173 (41%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
+ C +++ G+ A +L + + P+ + L+ Y + EA ++
Sbjct: 149 LITCNIMIDVYGQLGMAKEADKLFWGXRKMEIEPNVVSYNTLLRVYGDAELFGEAIHLFR 208
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
+ + +V + +M YG+ + ++I ++ R + YS IS +GK G
Sbjct: 209 LMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNTITYSTIISIWGKVG 268
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
+L+ +++ S G +D II Y R G + + LKR ++
Sbjct: 269 KLDRAAMLFQKLRSSGIEIDQVLYQTMIITYERAGLVAHAKRLLHELKRPDNI 321
>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 426
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 140/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ P+ V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPESNVIALVLNAY 400
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
Length = 798
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 120/297 (40%), Gaps = 25/297 (8%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEG---LLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
+L++ L +KK A +L+ + ++G P+ + ++ + G V +A +++E+
Sbjct: 170 ALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEM 229
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
+ F V S L+D + N+ +I+ + + Y+ I + GQL
Sbjct: 230 IGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQL 289
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E LK+M G D T I YY + G E + + + R +G +
Sbjct: 290 EEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVR-------KGQKPN 342
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-----------WNLLLLSYAGNFKMKSLQ 274
S Y + G + + +DL +L+ +N+L+ +YA + +
Sbjct: 343 STIY----HILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAM 398
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
F M + G PD+ +++ ++ D M E + P+++++ ++
Sbjct: 399 TAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLI 455
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 103/236 (43%), Gaps = 10/236 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + +++ +G P+++ L+ YA G +++ + + + ++ + + L+
Sbjct: 327 ARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILIC 386
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
AY + G ++ ++ ++ R L P+V YS I K G++E +MVS G
Sbjct: 387 AYAKHGAVDKAMTAFTEM--RQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGL 444
Query: 181 SVDSATGNAFIIYYSRFGSLTEMET-AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
S + + + I G ++E A+ + R H D + + KE +
Sbjct: 445 SPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHP-DAIFMNTIMDNLCKEGRVVEAQ 503
Query: 240 EFLRDV-GLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+F V +G K N++ +N L+ Y KM ++F RM G PD T+N
Sbjct: 504 DFFDMVIHIGVKP--NVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYN 557
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/383 (21%), Positives = 158/383 (41%), Gaps = 42/383 (10%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
V+ ++L L K A+ ++ + S+G +PD ST ++ N V A +++EE
Sbjct: 446 VNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEE 505
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
+ S+ V V + L+D++ ++G + D++ Y+ I + K +
Sbjct: 506 MKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARK 565
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL-------- 216
+ + M+S G + T A I + + G + + Y R++ + +
Sbjct: 566 MSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFK 625
Query: 217 IDKEGIRAVS-FTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
ID IR + FTY K K + L + + + +++++ L+ +
Sbjct: 626 IDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVG 685
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNI---RAVAFSRMSMFWDLHLS-LEHMKHESVGPDL 324
K+ Q F +MSE G+ P++ T++ R R+ DL L L M S P++
Sbjct: 686 KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRL----DLALKVLSRMLENSCAPNV 741
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS----PVVSTDPYVFEAFGKGDFHSSSEAF 380
+ Y ++D ++G+ D M++ + P V T + + FGK +
Sbjct: 742 IIYTEMIDGLC--KVGKT-DEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKA---GKVDKC 795
Query: 381 LEFKRQRKW--------TYRKLI 395
LE RQ TYR LI
Sbjct: 796 LELMRQMGAKGCAPNFVTYRVLI 818
>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 426
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA ++ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFNKMRGLGYFPDSNVIALVLNAY 400
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
Length = 661
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 132/343 (38%), Gaps = 19/343 (5%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P AL+ Y G + A+ V +E+ S L+DAY R G + +
Sbjct: 290 PRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARIL 349
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ ++ V+SR ++ F +G+ + L+EM + G D N I + +
Sbjct: 350 LKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGK 409
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGR 249
+ L A+ R++ +EGI T+ K + E ++
Sbjct: 410 YNCLGHAMDAFDRMR-------EEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESN 462
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
LG +N+++ + + ++ M E G P++ T+ + R F +
Sbjct: 463 CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAV 522
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR---NLDFGLSKMNLDDSPVVSTDPYVFE 366
+E MK + + P Y +V+AY + L N+ + L+ S VV +
Sbjct: 523 DCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNS--LIN 580
Query: 367 AFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRNQIF 409
AFG+ + + + L+F ++ + L K L R + F
Sbjct: 581 AFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQF 623
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/264 (18%), Positives = 98/264 (37%), Gaps = 6/264 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + + G+ PD ++ + + A ++ + V + L+D
Sbjct: 381 AFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLID 440
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A+ + G + I + D++ N L Y+ I+ G++ + E +E L EM +G
Sbjct: 441 AHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVP 500
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE---RKFFMLG 239
+ T + Y R G E +K A+ Y + +
Sbjct: 501 NIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVV 560
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+ +R GL + ++ N L+ ++ + ++ M E G PD+ T+ A
Sbjct: 561 KAMRADGL---EASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKAL 617
Query: 300 SRMSMFWDLHLSLEHMKHESVGPD 323
R+ F + + E M PD
Sbjct: 618 IRVEQFEKVPVIYEEMITSGCAPD 641
>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
Length = 742
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 134/337 (39%), Gaps = 42/337 (12%)
Query: 12 FKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVK 71
FK RF P + P + L ++R +EG VDC S L +
Sbjct: 7 FKSLRFRFPEN---PPSIYLYNVLLRSCTKEGRVDCVSW---------------LCKDMV 48
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
+ G+ P+ T L+ ++G + +A+ +++++ + L+ Y R G +
Sbjct: 49 ASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTS 108
Query: 132 EIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
+ + ++ ++ R P VY+ IS F K+G+ + E + EM G S D T NA
Sbjct: 109 KGLELLGEM--RRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNA 166
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
I G + E R+ R + + G+ + MLG F ++ L
Sbjct: 167 RISALCSSGKVLEAS----RIFRDMQIDEVLGLPQPNIITYN----LMLGGFCKEGMLEE 218
Query: 250 --------KDLGNLL----WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
K NL+ +N+ LL K+ Q M + G P++ ++NI
Sbjct: 219 ARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMD 278
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + +D + + M V PD VTY ++ Y
Sbjct: 279 GLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGY 315
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 135/353 (38%), Gaps = 80/353 (22%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+ + S G+LPD T L+ Y + G V EA V E++
Sbjct: 289 ARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMM---------------- 332
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQGQLELMENTLKEMVSRGF 180
R GC P Y+ I + K+G++ E L++M +G+
Sbjct: 333 ---RDGCS------------------PNNYTCNILLYSLWKEGRISEAEELLQKMNEKGY 371
Query: 181 SVDSATGNAFIIYYSRFGSL-----------TEMETAYGRLKRSR-HLIDKEGIRA---- 224
+D+ T N I G L T A G L S L+D R
Sbjct: 372 VIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMP 431
Query: 225 --VSFTYL------------KERKFF-MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
+S++ + ++KF M+G+ L+ + ++++ + S+ K
Sbjct: 432 DLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQP--------DSAIYDVFIHSFCKEGK 483
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ S R M + G + L T+N + + ++++ ++ M+ V PD+ Y
Sbjct: 484 ISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNN 543
Query: 330 VVDAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKG-DFHSSSEAF 380
V+ + + ++ L +M SP +S+ + +AF K DF + E F
Sbjct: 544 VLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIF 596
>gi|356565780|ref|XP_003551115.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Glycine max]
Length = 622
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 127/310 (40%), Gaps = 13/310 (4%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+ +I Q +L+ L +K H +V+ V+ + + PD+ AL+ +A
Sbjct: 154 QNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSRFFNALVNAFAEF 213
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G + +A+ V +++ S S + L+ YG G +E I ++D +S ++ P +
Sbjct: 214 GNIEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESIKLLDLMSIE-GNVKPNLK 272
Query: 153 S--RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+ I K N + +M + G D + N I Y++ G ++E +
Sbjct: 273 TCNMLIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVAISYAQNGKTVQVEAMILEM 332
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+R+ + + Y +E K F+ + KDLG L NL++L+ N +
Sbjct: 333 RRNGLKPNDRTCTIIISGYCREGKVREALRFVYRI----KDLG-LQPNLIILNSLVNGFV 387
Query: 271 KSLQREFMR-----MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
++ R+ + M E PD+ T++ A+S+ +M V PD
Sbjct: 388 DTMDRDGVNEVLNLMEEFYIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDGH 447
Query: 326 TYGCVVDAYL 335
Y + Y+
Sbjct: 448 AYSILAKGYV 457
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/292 (18%), Positives = 118/292 (40%), Gaps = 8/292 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C L+ L + + A +V + + G+ PD + + + YA NG ++ + + E+
Sbjct: 274 CNMLIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVAISYAQNGKTVQVEAMILEMR 333
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS----CRNADLLPEVYSRAISCFGKQ 162
+ + + + ++ Y R G E + + ++ N +L + + + +
Sbjct: 334 RNGLKPNDRTCTIIISGYCREGKVREALRFVYRIKDLGLQPNLIILNSLVNGFVDTMDRD 393
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G E++ N ++E R D T + + +S+ G L + + Y + +S D
Sbjct: 394 GVNEVL-NLMEEFYIRP---DVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDGHAY 449
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
++ Y++ ++ E L + +++ ++ + +M + R F +M E
Sbjct: 450 SILAKGYVRAQEMEKAEELLTVMTKSGVQPNVVIFTTVMSGWCSVGRMDNAMRVFDKMGE 509
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G P+L TF ++ W L+ M+ V P T V +A+
Sbjct: 510 FGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAW 561
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/383 (21%), Positives = 158/383 (41%), Gaps = 42/383 (10%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
V+ ++L L K A+ ++ + S+G +PD ST ++ N V A +++EE
Sbjct: 446 VNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEE 505
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
+ S+ V V + L+D++ ++G + D++ Y+ I + K +
Sbjct: 506 MKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARK 565
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL-------- 216
+ + M+S G + T A I + + G + + Y R++ + +
Sbjct: 566 MSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFK 625
Query: 217 IDKEGIRAVS-FTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
ID IR + FTY K K + L + + + +++++ L+ +
Sbjct: 626 IDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVG 685
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNI---RAVAFSRMSMFWDLHLS-LEHMKHESVGPDL 324
K+ Q F +MSE G+ P++ T++ R R+ DL L L M S P++
Sbjct: 686 KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRL----DLALKVLSRMLENSCAPNV 741
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS----PVVSTDPYVFEAFGKGDFHSSSEAF 380
+ Y ++D ++G+ D M++ + P V T + + FGK +
Sbjct: 742 IIYTEMIDGLC--KVGKT-DEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKA---GKVDKC 795
Query: 381 LEFKRQRKW--------TYRKLI 395
LE RQ TYR LI
Sbjct: 796 LELMRQMGAKGCAPNFVTYRVLI 818
>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/326 (20%), Positives = 128/326 (39%), Gaps = 53/326 (16%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW-EELLSSSFVL 112
L R ++ + Q+ + + + PDN T L+ C AN +A + W + + + V
Sbjct: 53 LRRGRQWEFSQQIAEDMANADVRPDNITYSTLISC-ANRCNYQDAAMAWFDRMHEAGCVP 111
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQV-------------------------------- 140
V S ++D YG++G ++E I++ ++V
Sbjct: 112 DVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIF 171
Query: 141 -SCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
+ + + P+ VY+ I+C G+ G++ +EM G ++ T + + YSR
Sbjct: 172 EEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRC 231
Query: 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY---LKERKFFMLG----EFLRDVGLGRK 250
G++ E + RL ++G+ Y LK + L ++LR++
Sbjct: 232 GNVMEGLEVFQRL--------RQGVACDVIVYNAVLKMCREAGLASEAEQYLREMTESGH 283
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+ + ++ YA R F +M EAG+ D+ + A+ + +
Sbjct: 284 QPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLLQAYGNAKEYNKVQE 343
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLD 336
L+ M + PD CV+ LD
Sbjct: 344 ILDEMTSVNCAPD-ERLCCVILNLLD 368
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 93/271 (34%), Gaps = 50/271 (18%)
Query: 144 NADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
NAD+ P+ YS ISC + + M G D T + I Y + G
Sbjct: 71 NADVRPDNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYD 130
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
E Y R+K++ DK TY + F ++R
Sbjct: 131 EAIALYERVKQAGWKPDK-------VTYGTMVRLFGRAGYIR------------------ 165
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
+ F M +G PD +NI R E M+ E V
Sbjct: 166 ----------AAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVK 215
Query: 322 PDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK----GDFHSSS 377
P+ VT V++ Y R G N+ GL V+ D V+ A K S +
Sbjct: 216 PNAVTLSTVMETY--SRCG-NVMEGLEVFQRLRQG-VACDVIVYNAVLKMCREAGLASEA 271
Query: 378 EAFL-----EFKRQRKWTYRKLIAVYLKKQL 403
E +L + WTYR +I+VY KK +
Sbjct: 272 EQYLREMTESGHQPNDWTYRNMISVYAKKGM 302
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 13/214 (6%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
KQ G+ V ++V GR A + +K G+ PD ++ C G +
Sbjct: 140 KQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRM 199
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ----VSCRNADLLPEV 151
A V+EE+ + LS +M+ Y R G E + + + V+C D++ V
Sbjct: 200 GHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQGVAC---DVI--V 254
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ + + G E L+EM G + T I Y++ G E + ++
Sbjct: 255 YNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMV 314
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
+ + ID ++ Y +++ + E L ++
Sbjct: 315 EAGYQIDVMAYTSLLQAYGNAKEYNKVQEILDEM 348
>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
Length = 759
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 114/289 (39%), Gaps = 7/289 (2%)
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID--QVSCRNADLLPEVYSRA 155
AQ++++ + + F +V V S L+ AYGR G + + I + +V C+ +L+ VY+
Sbjct: 139 AQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMKVVCK-PNLV--VYNAV 195
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I K G +EM+ +G S D T N I R E + + ++
Sbjct: 196 IDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGI 255
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK-DLGNLLWNLLLLSYAGNFKMKSLQ 274
D + TY + + + + + + + ++ ++ YA
Sbjct: 256 ARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAI 315
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F M PD +N +R+ F + H M+ D+VTY ++D+Y
Sbjct: 316 ALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSY 375
Query: 335 LDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+ R L +M SP + T + +A+ K FH + A +
Sbjct: 376 GKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQ 424
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/317 (19%), Positives = 125/317 (39%), Gaps = 46/317 (14%)
Query: 27 KNGD--LARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K GD A +I R ++G + +L+ GR + ++ ++ G+ D+
Sbjct: 201 KGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDV 260
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFV-LSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
T L+ Y G + + E + SS + SV S ++D Y ++G +E I++ +
Sbjct: 261 TYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQE 320
Query: 140 VSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
+ RN ++ P+ Y+ + + G + + + M GF+ D T NA + Y +
Sbjct: 321 M--RNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGK- 377
Query: 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW 257
G+ + + L+++ R S L +
Sbjct: 378 ---------QGKFREAMSLLEEMKQRGASPNILT-------------------------Y 403
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
+ L+ +Y + + F + +AG PD+ ++ + + LE M
Sbjct: 404 SALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMAD 463
Query: 318 ESVGPDLVTYGCVVDAY 334
+ P+++TY ++DAY
Sbjct: 464 NGIRPNVITYNSLLDAY 480
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 28 NGDLARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC 83
N D A I R ++ GF V +L++ G++ K A L+ +K G P+ T
Sbjct: 345 NFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYS 404
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
AL+ Y +GF +A +++++ + V + S L+D + G +E ++++++++
Sbjct: 405 ALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMA-- 462
Query: 144 NADLLPEV--YSRAISCFGKQ 162
+ + P V Y+ + +G+Q
Sbjct: 463 DNGIRPNVITYNSLLDAYGRQ 483
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 23 QTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
+T K+ + +I Y +++++ + H A L ++++ + PD
Sbjct: 283 ETMAKSSGIEPSVITY---------STMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICY 333
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
++ +A G EA + + + F + + L+D+YG+ G F E +S+++++
Sbjct: 334 NTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQ 393
Query: 143 RNADLLPEVYSRAISCFGKQG 163
R A YS I + K G
Sbjct: 394 RGASPNILTYSALIDAYCKHG 414
>gi|299469706|emb|CBN76560.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 915
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 115/304 (37%), Gaps = 48/304 (15%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S + L R + A L+N + GL PDN + A M +A G + +E+ S
Sbjct: 438 SAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGDPRNTASLSDEMKSR 497
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ V + A + G + ++ ++ + VY+ A+ G+ G+ ++
Sbjct: 498 GIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVA 557
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFG----SLTEMETAYGRLKRSRHLIDKEGIRA 224
E L++M G D+ + I+ SR G +L +ET + KEGI
Sbjct: 558 EKLLRKMGETGVVRDATSYTGAIVACSRNGDGDKALEWLET-----------MSKEGIAP 606
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM--RMSE 282
+ TY + + +GN + Q E++ M
Sbjct: 607 EAITY--------------------------NYAMAACGRSGNDR----QAEWLLNEMRG 636
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY-LDKRLGR 341
G P+ +++ A + D+ LE M E V D VTY VDA + + LG
Sbjct: 637 QGVTPNRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEADEVTYHIAVDAASIARDLGC 696
Query: 342 NLDF 345
+D
Sbjct: 697 AMDL 700
>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
Length = 528
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 132/343 (38%), Gaps = 19/343 (5%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P AL+ Y G + A+ V +E+ S L+DAY R G + +
Sbjct: 157 PRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARIL 216
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ ++ V+SR ++ F +G+ + L+EM + G D N I + +
Sbjct: 217 LKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGK 276
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGR 249
+ L A+ R++ +EGI T+ K + E ++
Sbjct: 277 YNCLGHAMDAFDRMR-------EEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESN 329
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
LG +N+++ + + ++ M E G P++ T+ + R F +
Sbjct: 330 CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAV 389
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR---NLDFGLSKMNLDDSPVVSTDPYVFE 366
+E MK + + P Y +V+AY + L N+ + L+ S VV +
Sbjct: 390 DCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNS--LIN 447
Query: 367 AFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRNQIF 409
AFG+ + + + L+F ++ + L K L R + F
Sbjct: 448 AFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQF 490
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 22/272 (8%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + + G+ PD ++ + + A ++ + V + L+D
Sbjct: 248 AFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLID 307
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A+ + G + I + D++ N L Y+ I+ G++ + E +E L EM +G
Sbjct: 308 AHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVP 367
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-----------LK 231
+ T + Y R G E +K +G++ S Y L
Sbjct: 368 NIITYTTLVDVYGRSGRFKEAVDCIEAMK-------ADGLKPSSTMYHALVNAYAQRGLA 420
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
+ ++ + +R GL + ++ N L+ ++ + ++ M E G PD+ T
Sbjct: 421 DHALNVV-KAMRADGL---EASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVIT 476
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+ A R+ F + + E M PD
Sbjct: 477 YTTLMKALIRVEQFEKVPVIYEEMITSGCAPD 508
>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 139/330 (42%), Gaps = 23/330 (6%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
N +K+ G LP ++ +M +G + E VV EEL +F +S + L+DA+ +
Sbjct: 805 NMIKT-GPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKA 863
Query: 128 GCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
G E++ I + + + A LP +Y IS + +E + EM GF D A
Sbjct: 864 GDVFEVMKIYNGM--KAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLA 921
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK----ERKFFMLGEF 241
NA + Y+ G+ Y + + D++ + Y + E F +L E
Sbjct: 922 ILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNE- 980
Query: 242 LRDVGLGRKDLGNLL--WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+G++ L L + LL + A + + F M + + + +++ +
Sbjct: 981 -----MGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIY 1035
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPV-V 358
L MK + + P + T ++ +Y R + L+ NL S + V
Sbjct: 1036 RNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLN--NLKSSSLEV 1093
Query: 359 STDPY--VFEAFGK-GDFHSSSEAFLEFKR 385
ST PY VF+A+ K GD++ + LE KR
Sbjct: 1094 STLPYSTVFDAYLKNGDYNHGTTKLLEMKR 1123
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 107/247 (43%), Gaps = 14/247 (5%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
+A L+ V+ GL PD T L+ + + + +A V+E++++S + + ++
Sbjct: 276 VALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMV 335
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRG 179
+GR G E + ++ + +P+ Y+ + F K+G ++ +E+T +++V G
Sbjct: 336 SVHGRCGKAEEAERLFRELVEKG--FMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAG 393
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERK 234
F + T N I Y + G L Y ++ D AV++T + K +
Sbjct: 394 FKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPD-----AVTYTVMIDSLGKMNR 448
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
G+ L D+ + ++ L+ +YA + + F M +G PD + +
Sbjct: 449 IAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLV 508
Query: 295 RAVAFSR 301
F+R
Sbjct: 509 MLDVFAR 515
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 12/296 (4%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR ++ +A ++ EG A+M YA +G +A+ + + +
Sbjct: 198 LGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPD 255
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
+ + L++A + GC +++ R + L P+V Y+ IS + LE
Sbjct: 256 LVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTV 315
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
++M++ D T NA + + R G E E + L + D ++ + + K
Sbjct: 316 FEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAK 375
Query: 232 E---RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
E K E L G + + + +N ++ Y ++ + M G PD
Sbjct: 376 EGNVDKVEHTCEQLVKAGFKKNE---ITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPD 432
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
T+ + + +M+ + LE M + P L+ + ++ AY + GR D
Sbjct: 433 AVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAY--AKGGRRAD 486
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 68/159 (42%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V GR K A +L + +G +PD T +L+ +A G V + + E+L+ +
Sbjct: 333 AMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKA 392
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F + + ++ YG++G + + + D++ Y+ I GK ++
Sbjct: 393 GFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEA 452
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
L++M G +A I Y++ G + E +
Sbjct: 453 GKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTF 491
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+ +K +G+ P +T+ LM Y G EA+ V L SSS +S S + D
Sbjct: 1044 AENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFD 1103
Query: 123 AYGRIGCFN 131
AY + G +N
Sbjct: 1104 AYLKNGDYN 1112
>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
Length = 609
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 121/292 (41%), Gaps = 38/292 (13%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
V +LV L R+K+ L++ ++ G+ PD+ L A++ ++ +G V EA ++++
Sbjct: 93 VTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQK 152
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQ 162
+ S + + L+ YG I E + +++ ++ R +L P Y+ + K+
Sbjct: 153 MEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMT-RTTNLKPNNRTYNILVGALCKK 211
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
++ N + +M++ G D T N Y++ G + E+ ++D
Sbjct: 212 KSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESI---------IVD---- 258
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
ML + V + G +++ Y + R RM +
Sbjct: 259 --------------MLN---KKVNPNERTCG-----IIVGGYCEQGNLAEALRVVYRMRD 296
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G HP+L FN F + + +L M+ V PD++T+ +++ +
Sbjct: 297 LGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGW 348
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 121/300 (40%), Gaps = 30/300 (10%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
LV L +KK A +V+ + + G+ PD T L YA +G +A+ + ++L+
Sbjct: 204 LVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKK 263
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLEL 167
+ + ++ Y G E + ++ ++ R+ + P +++ I F G +
Sbjct: 264 VNPNERTCGIIVGGYCEQGNLAEALRVVYRM--RDLGIHPNLVIFNSLIKGFLDIGDSDG 321
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID---KEGIRA 224
++ L M G D T F ++ ++ GR+ + + + D K GI
Sbjct: 322 VDKALTMMEESGVKPDVIT----------FSTIMNGWSSAGRMDKCQEIFDDMLKSGIEP 371
Query: 225 -VSFTYLKERKFFMLGE---------FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
+ + + F GE F+ G+ R ++ +++ ++ + KM+
Sbjct: 372 DIHVFSILAKGFVRAGEPVKAESLLNFMSKYGV-RPNV--VIFTTIISGWCTAGKMEKAW 428
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ F M + P+L TF + W L+ M+ +V P+ T V +A+
Sbjct: 429 KVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTLKLVSEAW 488
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/338 (20%), Positives = 127/338 (37%), Gaps = 45/338 (13%)
Query: 37 RYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVL 96
+Y V ++++ L +K + A L+ +KS GLLP+ +T L+ Y G++
Sbjct: 236 KYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLK 295
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR-- 154
EA V E + ++ + V + L++ G E + D++ N LLP+V S
Sbjct: 296 EAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEM--ENLKLLPDVVSYNT 353
Query: 155 -----------------------------------AISCFGKQGQLELMENTLKEMVSRG 179
+ + K+G+++ NT+ +M G
Sbjct: 354 LINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESG 413
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
FS D T N I Y + G++ E + R +D + + T +E+K L
Sbjct: 414 FSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKK---LE 470
Query: 240 EFLRDVGLGRKD---LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
E + + RK + + + L++ Y + + + + M E P T+N
Sbjct: 471 EAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCII 530
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ L + + PD TY ++ Y
Sbjct: 531 GGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGY 568
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 112/280 (40%), Gaps = 5/280 (1%)
Query: 59 KPHLAHQLVNTVKSEGLLPD---NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
+PH A Q+ +K L P+ +TL ++ Y ++ V ++ + + + V +V
Sbjct: 150 QPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVN 209
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
+ ++ Y F + + ++ + N Y+ + K+G+L + L +M
Sbjct: 210 TFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDM 269
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
SRG + T N + Y + G L E + ++ L D + E +
Sbjct: 270 KSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRI 329
Query: 236 FMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
+ LRD K L +++ +N L+ K+ + MSE G P+ T NI
Sbjct: 330 EEAFK-LRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNI 388
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + D ++ M+ PD VTY +++ Y
Sbjct: 389 MVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGY 428
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%)
Query: 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
K A +N + GLLPD +T ++ Y G V +A +++ +SF V +
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCN 597
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+ G + + + + + + Y+ I+ K+G+L+ N L EM +
Sbjct: 598 ILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEK 657
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
D T NA I + G + E E ++ +L D+
Sbjct: 658 ELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQ 698
>gi|413934890|gb|AFW69441.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
Length = 504
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 78/183 (42%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + +++ EG+ PD ++ G E + +++ + + F S V + L+D
Sbjct: 282 ALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVD 341
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
YG+ G F + I + N LLP V+ + + +QG E N L+ M GF
Sbjct: 342 IYGQYGHFRDAQDCIAALRAENTQLLPRVFCVIANAYAQQGLCEQTVNVLQLMEEEGFEP 401
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
+ N+ I + G E + +K S D + T+++ +KF + E
Sbjct: 402 NLVMLNSLINAFGTAGRHLEALAVFQHIKDSGMSPDVVTYTTLMKTFMRAKKFEKVSEVY 461
Query: 243 RDV 245
R++
Sbjct: 462 REM 464
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/305 (19%), Positives = 108/305 (35%), Gaps = 70/305 (22%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
++ ++ G+ D + L+ Y +NG +A + E+ L V++ S L+D +G
Sbjct: 180 VLGEMRRWGIRLDTAGYSMLVRLYRDNGMWKKATDLVMEMQEVGVELDVKIYSGLIDTFG 239
Query: 126 RIGCFNEIISIID------------------QVSCRNADLL-----------------PE 150
+ G + + D Q CR ++ P+
Sbjct: 240 KYGQLADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPK 299
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
++ IS G+QG+ + ++ M +RGF A + Y ++G + + L
Sbjct: 300 IFVMIISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQDCIAAL 359
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ T L R F ++ GL + + N+L L
Sbjct: 360 R-------------AENTQLLPRVFCVIANAYAQQGLCEQTV-----NVLQL-------- 393
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
M E GF P+L N AF + +H+K + PD+VTY +
Sbjct: 394 ---------MEEEGFEPNLVMLNSLINAFGTAGRHLEALAVFQHIKDSGMSPDVVTYTTL 444
Query: 331 VDAYL 335
+ ++
Sbjct: 445 MKTFM 449
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+ +G+ + T L+ YA G + ++ V E+ L S L+ Y G
Sbjct: 149 MADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNGM 208
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
+ + ++ ++ +L ++YS I FGK GQL +M + G D +T NA
Sbjct: 209 WKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRAEGVRPDISTWNA 268
Query: 190 FIIYYSRFGSL 200
I ++ R G++
Sbjct: 269 LIQWHCRVGNM 279
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 128/314 (40%), Gaps = 16/314 (5%)
Query: 25 HPKNGDL--ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
+ K GDL A+ + R V S++ R+ A +L ++ EG+ PD T+
Sbjct: 341 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
A++ C A + E + V E + + + V + LMD Y + G E + ++
Sbjct: 401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460
Query: 143 RNA---DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199
++ + + YS+ +C+ + L L L+E + FS D T + + +
Sbjct: 461 KDIISWNTIIGGYSK--NCYANEA-LSLFNLLLEE---KRFSPDERTVACVLPACASLSA 514
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
+ +G + R+ + D+ ++ Y K + D+ KDL + W +
Sbjct: 515 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI--ASKDL--VSWTV 570
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
++ Y + K F +M +AG D +F A S + + M+HE
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630
Query: 320 -VGPDLVTYGCVVD 332
+ P + Y C+VD
Sbjct: 631 KIEPTVEHYACIVD 644
>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 821
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 124/299 (41%), Gaps = 23/299 (7%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
V A+L++ ++ +P A +L +K + P+N +L+ + G+V A ++EE
Sbjct: 424 VTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEE 483
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGK- 161
+ V V + L+D +G++ ++ I D++ R + P+ ++ IS GK
Sbjct: 484 MTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRM--RKLQIQPDRITFNALISASGKA 541
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ + +E G + D + NA I + G T+ + ++ +G
Sbjct: 542 KNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMR-------TKG 594
Query: 222 IRAVSFT-----YLKERKFFMLGEF-LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
IR + T Y R + F + D+ L ++ L + + L A N + + L
Sbjct: 595 IRPCTVTFNALIYGASRSHDLAASFKIVDLML-QEGLNPDAYTMNTLISACN-RRQDLST 652
Query: 276 EFM---RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
F + + G HPD TFN A ++ + L M+ + P VT +V
Sbjct: 653 AFEVLEKFKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIV 711
>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 10/220 (4%)
Query: 115 QVLSD-LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
QV+++ L+ Y + CFNE++ + DQ+ RN ++ IS F K+ +L + +
Sbjct: 65 QVVNNGLLRLYTQCECFNEVLKVFDQMPERNV----ASWNSLISGFVKEDKLGEALDVFR 120
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
M G T + +R +L + + ++ +S D + ++ Y+K
Sbjct: 121 RMQREGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVK-C 179
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
G L D G+ KDL + WN +L YA N M+ F M+ G PD TF
Sbjct: 180 GVVDYGRRLFD-GMRSKDLTS--WNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFI 236
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHE-SVGPDLVTYGCVVD 332
S + D M+ + V P L Y C+VD
Sbjct: 237 ALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVD 276
>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
Length = 912
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 120/290 (41%), Gaps = 22/290 (7%)
Query: 62 LAHQLVNTVKSEGLL-PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
LA + + + EG++ PD ST ++ Y G + A+ V++E+ +++ +
Sbjct: 235 LARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDEMGCKPNLVTYNTM--- 291
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSR 178
++ + + G + I+DQ++ D +P+ Y+ I + K+G+LE ++EMVSR
Sbjct: 292 INGFCKKGLMESAMKIVDQMT-ETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSR 350
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
+ T NA I G++ E + R++ + G++ T+ K +
Sbjct: 351 NCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLN-------GLKDNVATHTSILKGLCV 403
Query: 239 GEFLRDVGLGRKDLGNL-------LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
L D K++ L + +++ Y K M G +P +++
Sbjct: 404 VGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSS 463
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
FN L L MK P+ ++Y V+D L K GR
Sbjct: 464 FNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDG-LCKAKGR 512
>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
Japonica Group]
gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
Length = 551
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 116/293 (39%), Gaps = 14/293 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ R+K +++ +++EG+ P T L+ + + + + V+EE+ S
Sbjct: 183 SLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSK 242
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ V S +++AY R G + D+ + Y I+ F K GQ+E
Sbjct: 243 NLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAA 302
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
E + +M RG ++ N I Y R + + + +++K GI +T
Sbjct: 303 EMLVTDMQVRGVGINQIVFNTMIDGYCR-------KNMVDKALEIKMIMEKMGIELDVYT 355
Query: 229 Y-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
Y + + LR + ++ + L+ + M +R F M+
Sbjct: 356 YNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMA 415
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G P L T+N+ + + + M+ + + PD+ +Y +V +
Sbjct: 416 GNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGH 468
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 134/329 (40%), Gaps = 30/329 (9%)
Query: 27 KNGDLARKIIRYRKQEGF------VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
+NG+L R + + K +G V L+ R A ++ N + G + D
Sbjct: 376 RNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVV 435
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T L+ + +A +++E++ L+ L+ Y + G + +S+ + +
Sbjct: 436 TYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETM 495
Query: 141 SCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+ R+ L P+V Y+ + F K G++E + +M+SR + + I + G
Sbjct: 496 TLRS--LKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLG 553
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFT-------YLKERKFFMLGEFLRDVGLGRKD 251
++E + +K ++GI+ T YL+ +FL +
Sbjct: 554 LVSEAFRLWDEMK-------EKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVP 606
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFM---RMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
+ +N L+ S+ K ++ R F M E G P+L T+N FSR +
Sbjct: 607 PDCITYNTLINSFV---KEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEA 663
Query: 309 HLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
+ L M + + PD TY +++ Y+ K
Sbjct: 664 EMVLHKMIDKGINPDKSTYTSLINGYVSK 692
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 91/227 (40%), Gaps = 24/227 (10%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L++AY R G +E ++D ++ + Y+ I+ K+G E + L EM+ G
Sbjct: 265 LVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVG 324
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
++AT N ++ R + E E + + + + D +SF+ + +G
Sbjct: 325 LCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPD-----LISFSSI-------VG 372
Query: 240 EFLRDVGLGR--------KDLG----NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
F R+ LGR K +G +++ +L+ Y N + + M E G
Sbjct: 373 VFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVM 432
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D+ T+N R M D + M V PD T ++ Y
Sbjct: 433 DVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGY 479
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/308 (17%), Positives = 118/308 (38%), Gaps = 17/308 (5%)
Query: 43 GFVDCAS-------------LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
G VDC + L+ L ++ A ++++ + GL P+ +T +++
Sbjct: 280 GLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVES 339
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
V EA+ V+ E+L V + S ++ + R G ++ +++ + L+P
Sbjct: 340 CRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKM--KGVGLVP 397
Query: 150 E--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
+ +Y+ I+ + + + EMV RG +D T N + R L + + +
Sbjct: 398 DTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELF 457
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
+ D + + Y K+ + L + +N L+ +
Sbjct: 458 KEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKV 517
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+M+ + + M P +F+I F + + + + MK + + P LVT
Sbjct: 518 GEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTC 577
Query: 328 GCVVDAYL 335
++ YL
Sbjct: 578 NTIIKGYL 585
>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
Length = 1438
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 139/330 (42%), Gaps = 23/330 (6%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
N +K+ G LP ++ +M +G + E VV EEL +F +S + L+DA+ +
Sbjct: 805 NMIKT-GPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKA 863
Query: 128 GCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
G E++ I + + + A LP +Y IS + +E + EM GF D A
Sbjct: 864 GDVFEVMKIYNGM--KAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLA 921
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK----ERKFFMLGEF 241
NA + Y+ G+ Y + + D++ + Y + E F +L E
Sbjct: 922 ILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNE- 980
Query: 242 LRDVGLGRKDLGNLL--WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+G++ L L + LL + A + + F M + + + +++ +
Sbjct: 981 -----MGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIY 1035
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPV-V 358
L MK + + P + T ++ +Y R + L+ NL S + V
Sbjct: 1036 RNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLN--NLKSSSLEV 1093
Query: 359 STDPY--VFEAFGK-GDFHSSSEAFLEFKR 385
ST PY VF+A+ K GD++ + LE KR
Sbjct: 1094 STLPYSTVFDAYLKNGDYNHGTTKLLEMKR 1123
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 107/247 (43%), Gaps = 14/247 (5%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
+A L+ V+ GL PD T L+ + + + +A V+E++++S + + ++
Sbjct: 276 VALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMV 335
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRG 179
+GR G E + ++ + +P+ Y+ + F K+G ++ +E+T +++V G
Sbjct: 336 SVHGRCGKAEEAERLFRELVEKG--FMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAG 393
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERK 234
F + T N I Y + G L Y ++ D AV++T + K +
Sbjct: 394 FKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPD-----AVTYTVMIDSLGKMNR 448
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
G+ L D+ + ++ L+ +YA + + F M +G PD + +
Sbjct: 449 IAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLV 508
Query: 295 RAVAFSR 301
F+R
Sbjct: 509 MLDVFAR 515
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 12/296 (4%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR ++ +A ++ EG A+M YA +G +A+ + + +
Sbjct: 198 LGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPD 255
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
+ + L++A + GC +++ R + L P+V Y+ IS + LE
Sbjct: 256 LVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTV 315
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
++M++ D T NA + + R G E E + L + D ++ + + K
Sbjct: 316 FEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAK 375
Query: 232 E---RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
E K E L G + + + +N ++ Y ++ + M G PD
Sbjct: 376 EGNVDKVEHTCEQLVKAGFKKNE---ITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPD 432
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
T+ + + +M+ + LE M + P L+ + ++ AY + GR D
Sbjct: 433 AVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAY--AKGGRRAD 486
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 68/159 (42%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V GR K A +L + +G +PD T +L+ +A G V + + E+L+ +
Sbjct: 333 AMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKA 392
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F + + ++ YG++G + + + D++ Y+ I GK ++
Sbjct: 393 GFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEA 452
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
L++M G +A I Y++ G + E +
Sbjct: 453 GKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTF 491
Score = 37.7 bits (86), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+ +K +G+ P +T+ LM Y G EA+ V L SSS +S S + D
Sbjct: 1044 AENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFD 1103
Query: 123 AYGRIGCFN 131
AY + G +N
Sbjct: 1104 AYLKNGDYN 1112
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 126/320 (39%), Gaps = 53/320 (16%)
Query: 30 DLARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D+A ++++ +++G A SL+ L + KK H A L+ ++ +G++P+ T L
Sbjct: 479 DIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTL 538
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ + A ++E + + + L DA + G E S I + +
Sbjct: 539 LQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGV 595
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
L Y+ I F K G + ++ M+ G + DS T + L
Sbjct: 596 ALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT----------YSVLLHALC 645
Query: 206 AYGRLKRSRHLIDK---EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
RL + ++D+ GI+ F Y ++ E LR+ G+ D ++N
Sbjct: 646 KQKRLNEALPILDQMSLRGIKCTIFAYT-----ILIDEMLRE---GKHDHAKRMYN---- 693
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
M+ +G P TT+ + ++ + D + M+ E V P
Sbjct: 694 ----------------EMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAP 737
Query: 323 DLVTYGCVVD-----AYLDK 337
D+VTY ++D Y+D+
Sbjct: 738 DVVTYNILIDGCGHMGYIDR 757
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 114/293 (38%), Gaps = 23/293 (7%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L++ + A L+ + EG PD+ T L+ + EA + +++
Sbjct: 603 TTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSL 662
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
++ + L+D R G + + ++++ Y+ I+ + K+G+LE
Sbjct: 663 RGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLED 722
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
E+ + +M G + D T N I G + ++ A+ LKR + +
Sbjct: 723 AEDLILKMEREGVAPDVVTYNILI---DGCGHMGYIDRAFSTLKR----MVGASCEPNYW 775
Query: 228 TYLKERKFFMLGE--FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
TY K + G ++R V +WNL+ L RM + G
Sbjct: 776 TYCLLLKHLLKGNLAYVRSVDTSG------MWNLIELDITWQL--------LERMVKHGL 821
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+P +TT++ F + + L L+HM + + P+ Y ++ D +
Sbjct: 822 NPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTK 874
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 110/294 (37%), Gaps = 35/294 (11%)
Query: 41 QEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100
Q + ++ L R+ A +++ + +G PD T L+ Y G +A V
Sbjct: 77 QPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALV 136
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160
+ E++ + SV + L+++ + N + DQ+ R Y+ I F
Sbjct: 137 IHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFS 196
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
+QG L L EM GFS T NAFI + L ME A G ++ +++K
Sbjct: 197 RQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHC---VLERMEEALGVVQ---EMVEK- 249
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
G+ +Y ++ F R L R F+MK M
Sbjct: 250 GLAPDVVSYST-----IISGFCRKGELDRA-----------------FQMKQ------EM 281
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
E G PD T++ M + + M + PD TY +++AY
Sbjct: 282 VEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAY 335
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 11/198 (5%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
+++R V +L+ + + + + A + + ++ GL P+ T L+ ++ G
Sbjct: 140 EMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQG 199
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV-- 151
+ EA + E+ S F SV + + + + E + ++ ++ + L P+V
Sbjct: 200 LLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG--LAPDVVS 257
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
YS IS F ++G+L+ +EMV +G S D+ T Y S L EM
Sbjct: 258 YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVT------YSSLIQGLCEMRRLTEACD 311
Query: 212 RSRHLIDKEGIRAVSFTY 229
S+ ++D G+ FTY
Sbjct: 312 LSQEMLDM-GLPPDEFTY 328
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/261 (18%), Positives = 107/261 (40%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P+ T L+ + + G + + + E+ + + +V + L+DAY ++G +E +
Sbjct: 8 PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 67
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ +S + Y+ I+ ++G ++ L+EM +GF+ D T N + Y +
Sbjct: 68 LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCK 127
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
G+ + + + R+ A+ + K R EF + +
Sbjct: 128 EGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERT 187
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+ L+ ++ + R M+E+GF P + T+N + + ++ M
Sbjct: 188 YTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMV 247
Query: 317 HESVGPDLVTYGCVVDAYLDK 337
+ + PD+V+Y ++ + K
Sbjct: 248 EKGLAPDVVSYSTIISGFCRK 268
>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 426
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 124/321 (38%), Gaps = 39/321 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ G+ K A LV+ +++ G++PD + C L+ Y N LEA ++ E+
Sbjct: 84 SMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKFLEALSLFSEMREI 143
Query: 109 SFVLSVQVLSDLMDAYGRIG-----------------------------------CFNEI 133
+ + ++D YG++G F E
Sbjct: 144 QCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEA 203
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I + + +N + Y+ + +GK + E N ++EM RG ++ T + I
Sbjct: 204 IHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYSTIISI 263
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
+ + G L + +L+ S ID+ + + Y + L++ L R D
Sbjct: 264 WGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRLLQE--LKRPD-- 319
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
N+ + + AG +++ F + EAG D+T F FS+ + ++ +
Sbjct: 320 NIPRDTAIHILAGAGRIEEATWVFRQAVEAGEVKDITVFERMINLFSKHKKYPNVVEVFD 379
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
M+ P V++AY
Sbjct: 380 KMRGLGYFPHSNVIALVLNAY 400
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 72/170 (42%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L +++ G+ P+ + L+ Y + EA ++ +
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 212 RKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYSTIISIWGKVGKLD 271
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
+++ G +D I+ Y R G + + LKR ++
Sbjct: 272 RAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRLLQELKRPDNI 321
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 132/299 (44%), Gaps = 31/299 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L LG+ K A Q+ N ++ +G+ + T ++ Y G A V+E++ ++
Sbjct: 378 NLYSKLGKMDK---ALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNA 434
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ LM+A+ + G N + ++ ++ + Y+ I F K G L +
Sbjct: 435 GIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMA 494
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV--- 225
T+++M GF +AT N + ++ G++ R+ +ID+ + V
Sbjct: 495 FETVRDMKMAGFRPSAATYNVIMHGLAQ----------AGQMDRAASIIDEMVVAGVHPN 544
Query: 226 --SFTYLKERKFFMLGEF---------LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
S+T L E + +G+ +++VGL + D+ + + LL + +M+S
Sbjct: 545 ERSYTTLIE-GYACIGDMGLAFKYFNRIKEVGL-KPDV--IAYASLLKACCKAGRMQSTL 600
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
M+ AG + +NI +++ W+ ++ M+HE + PD+ +Y ++A
Sbjct: 601 AITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINA 659
>gi|356532886|ref|XP_003535000.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 485
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/361 (20%), Positives = 144/361 (39%), Gaps = 93/361 (25%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
D+ R+ Y+ +E L+ LG+ +P AH+L N++ +G AL+ +
Sbjct: 116 DMLREQPYYQPREDTY--MKLIVLLGKSSQPLRAHELFNSIHEDGC-GSTELYTALIAAF 172
Query: 90 ANNGFVLEAQVVWEELLS-----------SSFVLS---------VQVLSD---------- 119
N V EA + +E+++ S+ + + V++L D
Sbjct: 173 CQNNLVDEALSILDEMMNLPSCQPDIFTYSTLIKALVDSLKFEMVELLFDKMAKRSIVPN 232
Query: 120 ------LMDAYGRIGCFNE----IISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLEL 167
++ YG+ G F++ + S+++ +C+ P+V++ IS FG +GQ+++
Sbjct: 233 TYTQNLILSGYGKAGRFDQMEKIVSSMMEGTTCK-----PDVWTMNTVISVFGDKGQIDI 287
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYY-------------------------SRFGSLTE 202
ME + S G +T N I Y S + ++ E
Sbjct: 288 MEKWYDKFCSFGIQPQRSTFNILIAAYGSKRMYDKMSSVMQCMRRVKCPWTTSTYNNVIE 347
Query: 203 METAYGRLKRSRHLIDK---EGIRAVSFTYLKERKFFMLG--------EFLRDVGLGRK- 250
A G + D+ EG++A + T+ F + G + + V L K
Sbjct: 348 AFAAVGDAENMERAFDQMYAEGLKADTKTFC----FLINGYANAGIFHKVISSVSLAEKL 403
Query: 251 --DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
+ +N ++ + A + + ++R F M E HPD TT+++ A+ + M +
Sbjct: 404 QIRVNTSFYNAIISACAKDDALTEMERFFKHMKEKECHPDNTTYSVMIEAYRKEGMNDKI 463
Query: 309 H 309
H
Sbjct: 464 H 464
>gi|255551665|ref|XP_002516878.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543966|gb|EEF45492.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 714
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 121/303 (39%), Gaps = 56/303 (18%)
Query: 82 LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141
L AL+ + + G EA ++ E+ + V + LMDAY + E+ I ++
Sbjct: 336 LGALVKSFCDEGLKNEALIIQVEMAKKGAFSNAIVYNTLMDAYNKSNQIEEVEGIFAEMK 395
Query: 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
+ ++ + + ++ Q E++E L EM G D+ + I Y R +T
Sbjct: 396 AKGLKPTSATFNILMDAYSRRMQPEIVEELLLEMQDAGLQPDAKSYTCLISAYGRQNKMT 455
Query: 202 EMET-AYGRLKRSRHLIDKEGIRAVSFTYLK----------ERKFFMLGEFLRDVGLGRK 250
+M A+ R+K K GI+ S +Y K + E ++ G+
Sbjct: 456 DMAANAFLRMK-------KVGIKPTSHSYTALIHAYSVSGWHEKAYSTFENMQTEGIKPS 508
Query: 251 ---------------DLGNLL-----------------WNLLLLSYA--GNF-KMKSLQR 275
D L+ +N+LL +A G++ + + +
Sbjct: 509 IETYTALLDAFRRSGDTQTLMRIWKMMMSEKVEGTRVTFNILLDGFAKQGHYVEARDVIS 568
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
EF ++ G HP + T+N+ A++R L L+ M ++ PD +TY ++ AY+
Sbjct: 569 EFGKL---GLHPTVMTYNMLMNAYARGGQHSKLPQLLKEMATLNLKPDSITYLTMIYAYI 625
Query: 336 DKR 338
R
Sbjct: 626 RVR 628
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 66/155 (42%), Gaps = 1/155 (0%)
Query: 50 LVEDLGRKKK-PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
L+ GR+ K +A +K G+ P + + AL+ Y+ +G+ +A +E + +
Sbjct: 444 LISAYGRQNKMTDMAANAFLRMKKVGIKPTSHSYTALIHAYSVSGWHEKAYSTFENMQTE 503
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
S++ + L+DA+ R G ++ I + + ++ + F KQG
Sbjct: 504 GIKPSIETYTALLDAFRRSGDTQTLMRIWKMMMSEKVEGTRVTFNILLDGFAKQGHYVEA 563
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
+ + E G T N + Y+R G +++
Sbjct: 564 RDVISEFGKLGLHPTVMTYNMLMNAYARGGQHSKL 598
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 121/297 (40%), Gaps = 11/297 (3%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
CA L L R ++ A V ++ P S L+ A A + ++
Sbjct: 147 CAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQ 206
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRAISCFGKQGQ 164
+ + V + + L+ A R G + ++++D+V SC D++ +Y+ I CFGK G
Sbjct: 207 EVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIV--LYNVCIDCFGKAGN 264
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+++ E+ ++G D + + I + G L E E + +++ R +
Sbjct: 265 VDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNT 324
Query: 225 VSFTYLKERKF---FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ Y +F + L E LR+ G + +N +L K+ F M
Sbjct: 325 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVS---FNSILTCLGKKRKVDEALSLFEVMK 381
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+ P+ +T+NI + + L+ M+H S+ P+L+T +VD R
Sbjct: 382 KDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKAR 437
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 125/300 (41%), Gaps = 33/300 (11%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL--MLCYANNGFVLEAQVVWEELL 106
S++ LG+K+K A L +K + P++ST + MLC G V EA + +E+
Sbjct: 359 SILTCLGKKRKVDEALSLFEVMKKDAE-PNSSTYNIIIDMLCL--GGRVEEAYRILDEME 415
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+S ++ ++ ++D + E I + S R + Y I GK+GQ++
Sbjct: 416 HASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVD 475
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR--- 223
++M+ G NA + Y+ SL +GR K H I KE IR
Sbjct: 476 EAYRLFEKMLDAGH-------NANPVVYT---SLIRNFFIHGR-KEDGHKIFKELIRRGC 524
Query: 224 ----AVSFTYL-------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
+ TY+ + K M+ E +R G D+ + +++L+ + +
Sbjct: 525 KPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGF-LPDVRS--YSILIHGLTKAGQARE 581
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
F M + GF D +N F + + LE MK + V P + TYG +VD
Sbjct: 582 TSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVD 641
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 48/239 (20%)
Query: 35 IIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
I KQ+GF A ++V+ + K H A++++ +K + + P +T A++ A
Sbjct: 585 IFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLA 644
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
+ EA +++EE S L+V + S L+D +G++G +E I++++ + L P
Sbjct: 645 KIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG--LTPN 702
Query: 151 VYS---------------RAISCFGKQGQLELMENTL----------------------K 173
VY+ A+ CF +++ NT +
Sbjct: 703 VYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQ 762
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
+M +G + T I ++ G++T+ + + R K + + D A SF L E
Sbjct: 763 DMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD-----AASFNALIE 816
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 115/306 (37%), Gaps = 45/306 (14%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
GRK+ H++ + G PD + L M C G V + ++++E++ S F+ V
Sbjct: 507 GRKED---GHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDV 563
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKE 174
+ S L+ + G E +I + + L Y+ + F K G++ L+E
Sbjct: 564 RSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEE 623
Query: 175 MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234
M + AT +G++ + RL + L ++ + + E
Sbjct: 624 MKEKCVQPTVAT----------YGAIVDGLAKIDRLDEAYMLFEEAKSKGI------ELN 667
Query: 235 FFMLGEFLRDVG-LGRKDLGNLL---------------WNLLLLSYAGNFKMKSLQREFM 278
+ + G +GR D L+ WN LL + ++ F
Sbjct: 668 VVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQ 727
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY----------G 328
M E P+ T++I R+ + + + M+ + + P++VTY G
Sbjct: 728 SMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVG 787
Query: 329 CVVDAY 334
+ DAY
Sbjct: 788 NITDAY 793
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 130/314 (41%), Gaps = 22/314 (7%)
Query: 32 ARKIIRYRKQEGF-VDC---ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A KI Q G DC SL++ LG+K + A++L + G + +L+
Sbjct: 442 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 501
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ +G + +++EL+ + +L+ MD + G + I + + R+
Sbjct: 502 NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI--RSYGF 559
Query: 148 LPEVYSRAISCFG--KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS------ 199
LP+V S +I G K GQ N M +GF++D+ NA + + + G
Sbjct: 560 LPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYE 619
Query: 200 -LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
L EM+ + + + +G+ + + + +ML E + G+ +L +L++
Sbjct: 620 ILEEMKEKCVQPTVATYGAIVDGLAKID----RLDEAYMLFEEAKSKGI---ELNVVLYS 672
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
L+ + ++ M + G P++ T+N A + + + + MK
Sbjct: 673 SLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEM 732
Query: 319 SVGPDLVTYGCVVD 332
P+ TY +++
Sbjct: 733 KCPPNTYTYSILIN 746
>gi|255661142|gb|ACU25740.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 426
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PTTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD +++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAY 400
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 426
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I +S+ G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y K L + L R D N+ ++ + G +++ F +
Sbjct: 292 YQTMIVAYEKAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILVGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M PD +++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALILNAY 400
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/338 (20%), Positives = 127/338 (37%), Gaps = 45/338 (13%)
Query: 37 RYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVL 96
+Y V ++++ L +K + A L+ +KS GLLP+ +T L+ Y G++
Sbjct: 236 KYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLK 295
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR-- 154
EA V E + ++ + V + L++ G E + D++ N LLP+V S
Sbjct: 296 EAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEM--ENLKLLPDVVSYNT 353
Query: 155 -----------------------------------AISCFGKQGQLELMENTLKEMVSRG 179
+ + K+G+++ NT+ +M G
Sbjct: 354 LINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESG 413
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
FS D T N I Y + G++ E + R +D + + T +E+K L
Sbjct: 414 FSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKK---LE 470
Query: 240 EFLRDVGLGRKD---LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
E + + RK + + + L++ Y + + + + M E P T+N
Sbjct: 471 EAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCII 530
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ L + + PD TY ++ Y
Sbjct: 531 GGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGY 568
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 112/280 (40%), Gaps = 5/280 (1%)
Query: 59 KPHLAHQLVNTVKSEGLLPD---NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
+PH A Q+ +K L P+ +TL ++ Y ++ V ++ + + + V +V
Sbjct: 150 QPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVN 209
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
+ ++ Y F + + ++ + N Y+ + K+G+L + L +M
Sbjct: 210 TFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDM 269
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
SRG + T N + Y + G L E + ++ L D + E +
Sbjct: 270 KSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRI 329
Query: 236 FMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
+ LRD K L +++ +N L+ K+ + MSE G P+ T NI
Sbjct: 330 EEAFK-LRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNI 388
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + D ++ M+ PD VTY +++ Y
Sbjct: 389 MVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGY 428
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%)
Query: 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
K A +N + GLLPD +T ++ Y G V +A +++ +SF V +
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCN 597
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+ G + + + + + + Y+ I+ K+G+L+ N L EM +
Sbjct: 598 ILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEK 657
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEME 204
D T NA I + G + E E
Sbjct: 658 ELGPDHYTYNAIITALTDSGRIREAE 683
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 126/320 (39%), Gaps = 53/320 (16%)
Query: 30 DLARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D+A ++++ +++G A SL+ L + KK H A L+ ++ +G++P+ T L
Sbjct: 479 DIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTL 538
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ + A ++E + + + L DA + G E S I + +
Sbjct: 539 LQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGV 595
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
L Y+ I F K G + ++ M+ G + DS T + L
Sbjct: 596 ALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT----------YSVLLHALC 645
Query: 206 AYGRLKRSRHLIDK---EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
RL + ++D+ GI+ F Y ++ E LR+ G+ D ++N
Sbjct: 646 KQKRLNEALPILDQMSLRGIKCTIFAYT-----ILIDEMLRE---GKHDHAKRMYN---- 693
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
M+ +G P TT+ + ++ + D + M+ E V P
Sbjct: 694 ----------------EMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAP 737
Query: 323 DLVTYGCVVD-----AYLDK 337
D+VTY ++D Y+D+
Sbjct: 738 DVVTYNILIDGCGHMGYIDR 757
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 114/293 (38%), Gaps = 23/293 (7%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L++ + A L+ + EG PD+ T L+ + EA + +++
Sbjct: 603 TTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSL 662
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
++ + L+D R G + + ++++ Y+ I+ + K+G+LE
Sbjct: 663 RGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLED 722
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
E+ + +M G + D T N I G + ++ A+ LKR + +
Sbjct: 723 AEDLILKMEREGVAPDVVTYNILI---DGCGHMGYIDRAFSTLKR----MVGASCEPNYW 775
Query: 228 TYLKERKFFMLGE--FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
TY K + G ++R V +WNL+ L RM + G
Sbjct: 776 TYCLLLKHLLKGNLAYVRSVDTSG------MWNLIELDITWQL--------LERMVKHGL 821
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+P +TT++ F + + L L+HM + + P+ Y ++ D +
Sbjct: 822 NPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTK 874
>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 426
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G++
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVM 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y K L ++ K N+ + + AG +++ F +
Sbjct: 292 YQTMIVAYEKAGLVAHAKRLLHEL----KSPDNIPRDTAIHILAGAGRIEEATYVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVRDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAY 400
>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 107/267 (40%), Gaps = 15/267 (5%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P T L+ G++ A+ V++++ + L L+ Y R G + I +
Sbjct: 151 PQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDL 210
Query: 137 IDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+D++ R++ LP Y+ IS +GQ E +++M G S D T N I
Sbjct: 211 LDEM--RSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAAL 268
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGI---RAVSFTYLKE----RKFFMLGEFLRDVGL 247
+ G + E R+ R + ++ G+ V++ + E F + D
Sbjct: 269 CKSGQILEAS----RIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMK 324
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
+ L +N+ +L + K+ M+E P+L ++NI + MF D
Sbjct: 325 NSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSD 384
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAY 334
L M+ V PD VTY ++ Y
Sbjct: 385 ARSILGLMRESGVAPDTVTYSTLLHGY 411
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 133/346 (38%), Gaps = 66/346 (19%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ ++ G+ PD T L+ Y G +LEA V E++
Sbjct: 385 ARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMI---------------- 428
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMENTLKEMVSRGF 180
++GCF P +Y+ I K+G+ E+ L+ M RG+
Sbjct: 429 ---QVGCF------------------PNMYTCNILLHSLWKEGRASEAEDLLQMMNERGY 467
Query: 181 SVDSATGNAFIIYYSRFGSLTE-METAYGRLKR--------SRHLIDKEGIRAVSFTYLK 231
+D+ T N I + G+L + +E G R ID IR L
Sbjct: 468 GLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLP 527
Query: 232 ERKFF--MLGEFLRDVG------------LGRK-DLGNLLWNLLLLSYAGNFKMKSLQRE 276
+ + ++G + VG +G+K +L+++ + +Y K+ S R
Sbjct: 528 DSITYATIIGGLCK-VGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRV 586
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
M + G + L T+N + ++++ ++ MK + P++ TY ++ +
Sbjct: 587 LKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSE 646
Query: 337 KRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKG-DFHSSSEAF 380
++ L +M SP + T + AF K DF ++ E F
Sbjct: 647 GGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELF 692
>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1023
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 46 DCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102
DC + ++ K K A ++N +KS G++P+ T L+ G V +A+
Sbjct: 669 DCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESAL 728
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162
+E+L FV + L+ AY R ++I+ I +++ +L VY+ I+ F +
Sbjct: 729 DEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRL 788
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFI 191
G + L EMV RG S D T NA I
Sbjct: 789 GMTRKAKVVLDEMVKRGISADLVTYNALI 817
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 119/292 (40%), Gaps = 9/292 (3%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
V C ++++ L + K A ++ T+ L P+ T AL+ Y G + A++V +
Sbjct: 426 IVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQ 485
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
++ +V S +++ Y + G ++ + ++ ++ RN VY+ I + K G
Sbjct: 486 KMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAG 545
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+ ++ ++ KEM SR + + + R G + E + + ID + +
Sbjct: 546 EQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLI--IDMYSKGIDPDIVN 603
Query: 224 AVSFT--YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM--R 279
S Y KE ++++ + +N L+ G ++ ++ R
Sbjct: 604 YASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALI---KGLLRLGKYDPRYVCSR 660
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M E G PD T+N + D L MK + P+ VTY ++
Sbjct: 661 MIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILI 712
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/313 (19%), Positives = 136/313 (43%), Gaps = 6/313 (1%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L +K+I V C+S++ R K A L + GL P++ + ++
Sbjct: 343 LYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLF 402
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
+G V+EA + +++ + + +MD ++G E + + + N
Sbjct: 403 KSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCV 462
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
YS + + K G++EL E L++M + T ++ I Y++ G L++ R
Sbjct: 463 TYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVL-RE 521
Query: 211 KRSRHLIDKEGIRAVSFT-YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
R+++ + A+ Y K + + +F +++ R + N+++++LL + +
Sbjct: 522 MVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGR 581
Query: 270 MKSLQREFMRMSEAGFHPDLTTF-NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
M + + M G PD+ + ++ F + L + ++ MK +++ D+V Y
Sbjct: 582 MDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSI-VQEMKEKNIRFDVVAYN 640
Query: 329 CVVDAYLDKRLGR 341
++ L RLG+
Sbjct: 641 ALIKGLL--RLGK 651
>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
[Xeroaloysia ovatifolia]
Length = 431
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G++
Sbjct: 55 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVM 114
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 115 PNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 174
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N Y+ + +GK
Sbjct: 175 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGK 234
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 235 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVL 294
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y K L ++ K N+ + + AG +++ F +
Sbjct: 295 YQTMIVAYEKAGLVAHAKRLLHEL----KSPDNIPRDTAIHILAGAGRIEEATYVFRQAI 350
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 351 DAGEVRDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAY 403
>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Brachypodium distachyon]
Length = 571
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 131/314 (41%), Gaps = 39/314 (12%)
Query: 28 NGDLARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC 83
N A ++ KQ+G V ++LV L + K +LV+ +K GL+P+ +TL
Sbjct: 273 NTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLN 332
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
+++ + G + +A+ + + + +V + L+D Y R+ + +++ + +S +
Sbjct: 333 SVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGK 392
Query: 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
+Y+ I+ F + G + L EM +G D T N I G+L
Sbjct: 393 GVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLI------GAL--- 443
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLS 263
G ++++ L+D + M+G L V +L +N ++
Sbjct: 444 -CVKGEVRKAVKLLD---------------EMLMVG--LEPV--------HLTYNTIING 477
Query: 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
Y +KS RM + ++ T+N+ RM + + L M + + P+
Sbjct: 478 YCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPN 537
Query: 324 LVTYGCVVDAYLDK 337
VTY + + ++K
Sbjct: 538 GVTYDTIKEGMMEK 551
>gi|357436523|ref|XP_003588537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477585|gb|AES58788.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 653
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 134/325 (41%), Gaps = 26/325 (8%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+K+I Q + SL+ L +K H LV+ V+ + + ++ A++ +A +
Sbjct: 98 KKLIEEGHQPSLITYTSLLHALTMQKCFKSIHSLVSQVEEKQMKTNSIFYNAVINAFAES 157
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID-QVSCRNADLLPEV 151
G + +A+ +++ S F S S+L+ YG +G E + ++D ++ N+ +
Sbjct: 158 GNMEDAKKTVQKMKESGFRPSTGTYSNLIKGYGIVGKSGEAMKLLDLMLTDGNSKPDLQT 217
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ I + G + N + +M + G DS T N I Y E E ++
Sbjct: 218 YNMLIKALCQSGNMSEAWNIVCKMPASGMLPDSVTFNTMAIGYVLNSETAEAEAMILEMQ 277
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG---NLL-WNLLL------ 261
R ++ + Y KE + +F+ + KDLG NLL +N+L+
Sbjct: 278 RKGLEPNERTFTVIVNGYYKEGQIKEALQFVYRI----KDLGFKPNLLVFNVLINGFVDR 333
Query: 262 ----------LSYAGNFKMKSLQREFMR-MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
++A K + +R M E PD+ T++ A+S+
Sbjct: 334 MDRDGVDEFSNTFAQEGKNQVTTPLVLRLMKEFQIQPDVVTYSTIMNAWSQAGFQDKCKQ 393
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYL 335
++M V PD+ Y +V Y+
Sbjct: 394 IFDNMLQSGVKPDVHAYSILVKGYV 418
>gi|255661130|gb|ACU25734.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 426
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N D Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIDQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHVKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD +++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAY 400
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 105/267 (39%), Gaps = 10/267 (3%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL-GRNLD-FGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSE 378
P++V+Y ++ Y D L G + F L + D VV+ + + +GK H +
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIDQNVVTYNSMMM-IYGKTLEHVKAN 239
Query: 379 AFLEFKRQR-----KWTYRKLIAVYLK 400
++ + R TY +I+++ K
Sbjct: 240 NLIQEMQNRGIEPNSITYSTIISIWGK 266
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 117/291 (40%), Gaps = 2/291 (0%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V+ L + KK A L+ + + G P +T AL+ G + EA + +++ +
Sbjct: 170 AIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN 229
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V + L+D G+ E + +++ R L Y+ I + G++
Sbjct: 230 GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQA 289
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI-RAVSF 227
+ K M S+G D T + I + G + + ++ +R L E + A+
Sbjct: 290 SSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSME-ARGLAPNEVVYSALIH 348
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
K RK E L + + +N+L+ + +++ + F M EAG P
Sbjct: 349 GLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKP 408
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
D+ T+NI F + + M P++VTYG ++ +R
Sbjct: 409 DVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRR 459
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 111/304 (36%), Gaps = 35/304 (11%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL RKI+ V SL++ LG++K+ A++L + GL+ D AL+
Sbjct: 221 DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGL 280
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
G + +A V++ + S V V LS ++D + G + I + R
Sbjct: 281 LQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNE 340
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
VYS I K +++ L +M + D+ T N I + G
Sbjct: 341 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG----------- 389
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
D E RA FF + + + G + D+ +N+L+ +
Sbjct: 390 --------DVEAARA----------FF---DEMLEAGC-KPDV--YTYNILVSGFCKAGN 425
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ F MS + P++ T+ + L +HMK PD Y
Sbjct: 426 TDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSS 485
Query: 330 VVDA 333
+VD
Sbjct: 486 LVDG 489
>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 107/267 (40%), Gaps = 15/267 (5%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P T L+ G++ A+ V++++ + L L+ Y R G + I +
Sbjct: 151 PQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDL 210
Query: 137 IDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+D++ R++ LP Y+ IS +GQ E +++M G S D T N I
Sbjct: 211 LDEM--RSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAAL 268
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGI---RAVSFTYLKE----RKFFMLGEFLRDVGL 247
+ G + E R+ R + ++ G+ V++ + E F + D
Sbjct: 269 CKSGQILEAS----RIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMK 324
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
+ L +N+ +L + K+ M+E P+L ++NI + MF D
Sbjct: 325 NSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSD 384
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAY 334
L M+ V PD VTY ++ Y
Sbjct: 385 ARSILGLMRESGVAPDTVTYSTLLHGY 411
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 133/346 (38%), Gaps = 66/346 (19%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ ++ G+ PD T L+ Y G +LEA V E++
Sbjct: 385 ARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMI---------------- 428
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMENTLKEMVSRGF 180
++GCF P +Y+ I K+G+ E+ L+ M RG+
Sbjct: 429 ---QVGCF------------------PNMYTCNILLHSLWKEGRASEAEDLLQMMNERGY 467
Query: 181 SVDSATGNAFIIYYSRFGSLTE-METAYGRLKR--------SRHLIDKEGIRAVSFTYLK 231
+D+ T N I + G+L + +E G R ID IR L
Sbjct: 468 GLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLP 527
Query: 232 ERKFF--MLGEFLRDVG------------LGRK-DLGNLLWNLLLLSYAGNFKMKSLQRE 276
+ + ++G + VG +G+K +L+++ + +Y K+ S R
Sbjct: 528 DSITYATIIGGLCK-VGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRV 586
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
M + G + L T+N + ++++ ++ MK + P++ TY ++ +
Sbjct: 587 LKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSE 646
Query: 337 KRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKG-DFHSSSEAF 380
++ L +M SP + T + AF K DF ++ E F
Sbjct: 647 GGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELF 692
>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 118/293 (40%), Gaps = 48/293 (16%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ R+ A ++ ++S G +PD T AL+ Y+ G A+ V+E +L +
Sbjct: 246 ALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEA 305
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLE 166
+ L+DA+GR G ++ +I D S + P + S +S F K G++
Sbjct: 306 GVKADHVSYNILIDAFGRAGLISDAQAIYD--SMKKVGFKPTMKSHILLLSAFVKAGRVT 363
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
EN ++ + S G D+ N+ + Y G + +ME+ Y ++ S
Sbjct: 364 DAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGS------------- 410
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+ + D+ L N L+ YA ++ + F + GF
Sbjct: 411 --------------------VCKPDIITL--NTLINVYAQGGYIERAEEIFNSLESKGFT 448
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
PD+ ++ A+S+ ++ K SV ++ GC+ D K L
Sbjct: 449 PDVMSWTSLMGAYSKRKLY---------RKCVSVYQKMLIAGCIPDRATAKVL 492
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 16/190 (8%)
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
K R ++ E++ + + D+G +N+L+ +Y + + F M + P T
Sbjct: 80 KWRSAIVIYEWILQGSMFKPDVG--CFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTET 137
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNL--DFGLS 348
+FN+ A+SR L MK + P LVTY ++ L+K L D
Sbjct: 138 SFNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEV-LNKSGSWQLAEDVFRE 196
Query: 349 KMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRK-------WTYRKLIAVYLKK 401
N P V+T + +GK H S++A F+ RK +TY LI + ++
Sbjct: 197 MQNRGVPPAVNTFTLMINIYGKA--HHSAKAEHLFQSMRKALCPPSLFTYTALINAHARE 254
Query: 402 Q--LRRNQIF 409
+R +IF
Sbjct: 255 GNCVRAEEIF 264
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 101/271 (37%), Gaps = 8/271 (2%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD LM Y EA+ + + + + + LM AY R G +
Sbjct: 99 PDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAERV 158
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ ++ N Y+ + K G +L E+ +EM +RG T I Y +
Sbjct: 159 LHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGK 218
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF---LRDVGLGRKDLG 253
+ E + ++++ A+ + +E E L+ VG D+
Sbjct: 219 AHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGF-VPDI- 276
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+N LL +Y+ + F M EAG D ++NI AF R + D +
Sbjct: 277 -YTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYD 335
Query: 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
MK P + ++ ++ A++ + GR D
Sbjct: 336 SMKKVGFKPTMKSHILLLSAFV--KAGRVTD 364
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 63/371 (16%), Positives = 136/371 (36%), Gaps = 7/371 (1%)
Query: 45 VDCASLVEDL-GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
V C +++ D GR K+ A + +K LP ++ LM Y+ G + A+ V
Sbjct: 101 VGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAERVLH 160
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
E+ S+ + + ++ + G + + ++ R ++ I+ +GK
Sbjct: 161 EMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAH 220
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
E+ + M T A I ++R G+ E + L+ + D
Sbjct: 221 HSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYN 280
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
A+ Y + E + ++ +N+L+ ++ + Q + M +
Sbjct: 281 ALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKV 340
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK-RLGRN 342
GF P + + + AF + D + ++ V PD + ++ AY + R+ +
Sbjct: 341 GFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKM 400
Query: 343 LDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWT-----YRKLIAV 397
S P + T + + +G + +E + +T + L+
Sbjct: 401 ESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGA 460
Query: 398 YLKKQLRRNQI 408
Y K++L R +
Sbjct: 461 YSKRKLYRKCV 471
>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 845
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 132/318 (41%), Gaps = 18/318 (5%)
Query: 39 RKQEGFV----DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
++Q GF ++V +LGR K+ ++L++ + +G P+ T L+ Y +
Sbjct: 340 KRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANY 399
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--Y 152
+ EA V++++ + L+D + + G + + + ++ + A L P+ Y
Sbjct: 400 LNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRM--QAAGLSPDTFTY 457
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
S I+C GK G L EMV +G + + T N I +++ + Y ++
Sbjct: 458 SVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQN 517
Query: 213 SRHLIDKEG----IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+ DK + + E + E R + + + LL + L AGN
Sbjct: 518 AGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVD--LWGKAGNV 575
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+ K+ Q + M AG P++ T N F R+ + + L+ M + P L TY
Sbjct: 576 E-KAWQW-YQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYT 633
Query: 329 CVVDAYLDKRLGRNLDFG 346
++ D R N D G
Sbjct: 634 LLLSCCTDAR--SNFDMG 649
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/357 (17%), Positives = 140/357 (39%), Gaps = 11/357 (3%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C L+ L + L + N + G+ P T ++ G + ++ ++ ++
Sbjct: 257 CNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMR 316
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
V + L+D YG++G E+ S+ +++ ++ +P++ Y+ I+C+ K +
Sbjct: 317 EMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM--KDVGCVPDIITYNGLINCYCKFEK 374
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ EM + G + T + I + + G + + ++R+ L ++ +
Sbjct: 375 MPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTS 434
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+ K + L D+ L + + LL +M + F M + G
Sbjct: 435 LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDG 494
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
P+ + + + D L+ M ++ PDL+ YG ++ + +R
Sbjct: 495 ISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETK 554
Query: 345 FGLSKM---NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVY 398
L +M + +PV+ST + +A+ K SS+A F+ + I Y
Sbjct: 555 LILEEMKSRGISANPVISTT--IIDAYFKAG--KSSDALNFFQEMQDVGVEATIVTY 607
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 88/209 (42%), Gaps = 8/209 (3%)
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD-VGLGRKDL 252
+ G L E + R++ R L + K ++ +F D +G G
Sbjct: 229 FVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAP- 287
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+N+++ +++ +R F++M E G PD+ T+N + ++ ++
Sbjct: 288 SVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLF 347
Query: 313 EHMKHESVGPDLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK- 370
MK PD++TY +++ Y +++ R ++ N P V T + +AF K
Sbjct: 348 NEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKE 407
Query: 371 GDFHSSSEAFLEFKRQ----RKWTYRKLI 395
G + + F++ +R ++TY LI
Sbjct: 408 GMMQGAIKLFVDMRRTGLLPNEFTYTSLI 436
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/317 (20%), Positives = 125/317 (39%), Gaps = 47/317 (14%)
Query: 30 DLARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D+A ++++ +++G A SL+ L + KK H A L+ ++ +G++P+ T L
Sbjct: 364 DIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTL 423
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ + A ++E + + + L DA + G E S I + +
Sbjct: 424 LQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGV 480
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
L Y+ I F K G + ++ M+ G + DS T + L
Sbjct: 481 ALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYT----------YSVLLHALC 530
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
RL + ++D+ +R + T ++ E LR+ G+ D ++N
Sbjct: 531 KQKRLNEALPILDQMSLRGIKCTIFAYT--ILIDEMLRE---GKHDHAKRMYN------- 578
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
M+ +G P TT+ + ++ + D + M+ E V PD+V
Sbjct: 579 -------------EMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVV 625
Query: 326 TYGCVVD-----AYLDK 337
TY ++D Y+D+
Sbjct: 626 TYNILIDGCGHMGYIDR 642
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 114/293 (38%), Gaps = 23/293 (7%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L++ + A L+ + EG PD+ T L+ + EA + +++
Sbjct: 488 TTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSL 547
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
++ + L+D R G + + ++++ Y+ I+ + K+G+LE
Sbjct: 548 RGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLED 607
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
E+ + +M G + D T N I G + ++ A+ LKR + +
Sbjct: 608 AEDLILKMEREGVAPDVVTYNILI---DGCGHMGYIDRAFSTLKR----MVGASCEPNYW 660
Query: 228 TYLKERKFFMLGE--FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
TY K + G ++R V +WNL+ L RM + G
Sbjct: 661 TYCLLLKHLLKGNLAYVRSVDTSG------MWNLIELDITWQL--------LERMVKHGL 706
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+P +TT++ F + + L L+HM + + P+ Y ++ D +
Sbjct: 707 NPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTK 759
>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 587
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
R +K A +L +K+E + P T L+ Y V +A + E+ +
Sbjct: 266 RARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAI 325
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
V + ++DA G F E + ++++ Y+ + F K G +E LK+M
Sbjct: 326 VYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKM 385
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
+SRGF T N F Y+SR G + E Y ++ S H D+
Sbjct: 386 ISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDR 429
>gi|255661164|gb|ACU25751.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 426
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA + E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAY 400
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|255661194|gb|ACU25766.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 426
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 136/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V S++ + K A L+N +++ G++
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVM 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
PD + L+ + N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PDTVSYTTLLTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + A +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAAAGRLEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERLIHLFSKYKKYSNVVEVFDKMRERRYFPDSNVIALVLNAY 400
>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 426
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/336 (19%), Positives = 131/336 (38%), Gaps = 39/336 (11%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
++ R R V +++ G+ K A L++ +++ G+ P+ ++ L+ Y N
Sbjct: 69 RLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENK 128
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG------------------------- 128
LEA V+ E+ +L + + ++D YG++G
Sbjct: 129 KFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYN 188
Query: 129 ----------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
F E I + + +N + Y+ + +GK + E N ++EM +R
Sbjct: 189 TLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNR 248
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
G +S T + I + + G L + +L+ S ID+ + + Y +
Sbjct: 249 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERSGLVAHA 308
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
L + L R D N+ ++ + AG +++ F + +AG D+T F
Sbjct: 309 KRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHL 364
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
FS+ + ++ + M PD V++AY
Sbjct: 365 FSKYKKYGNVVEVFDKMCGLGYFPDSNVIALVLNAY 400
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRSR D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
Length = 698
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/321 (19%), Positives = 127/321 (39%), Gaps = 15/321 (4%)
Query: 27 KNGDLARKIIRYRKQEG------FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD-- 78
+ GD+ R ++ + E V +++ LGRK L+ +++ GL P+
Sbjct: 128 RRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQ 187
Query: 79 --NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
N+ + AL C + + +A + +++ S F V + ++ + R G E + +
Sbjct: 188 IYNTVINALCKCRSAS----QASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKL 243
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ + R + Y+ I F +G+ + + L EM+ RG + D T A I
Sbjct: 244 LREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVV 303
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
G + + ++ + + D + K+R L ++ + +
Sbjct: 304 SGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFI 363
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+ L+ + + K+ ++ F M E PD+ +N+ + + M + + M+
Sbjct: 364 YTTLIDGFVRSDKLSDARKIFEFMEEKAC-PDIVAYNVMIKGYCKFGMMKEAVTCMSSMR 422
Query: 317 HESVGPDLVTYGCVVDAYLDK 337
PD TY +VD Y K
Sbjct: 423 KAGCIPDEFTYTTLVDGYAKK 443
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 119/313 (38%), Gaps = 25/313 (7%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
++R + + C +V L + + L+ EG +P L+ Y G
Sbjct: 73 LVREGGADDYSTCV-MVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGD 131
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154
+ ++ E+ + + +V ++ GR G ++ S++ ++ R ++Y+
Sbjct: 132 IGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNT 191
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
I+ K + L +MV F+ D T N I + R G + E LK R
Sbjct: 192 VINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREA------LKLLR 245
Query: 215 HLIDKEGIRAVSFTYLK-ERKFFMLGE-------FLRDVGLGRKD----LGNLLWNLLLL 262
I + G+ +Y F + GE + +G G LG L+ L++
Sbjct: 246 EAI-RRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVV- 303
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
+G + RE +M+E PD +N+ + M LE M + V P
Sbjct: 304 --SGQVNDALIVRE--KMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQP 359
Query: 323 DLVTYGCVVDAYL 335
D Y ++D ++
Sbjct: 360 DKFIYTTLIDGFV 372
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 63/332 (18%), Positives = 119/332 (35%), Gaps = 13/332 (3%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
D+ + C ++ G V E + + E V + L+D Y R G + ++
Sbjct: 80 DDYSTCVMVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLL 139
Query: 138 DQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
++ + ++P V Y I G++G L +E+ L EM +RG S + N I
Sbjct: 140 GEMETKG--IIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALC 197
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL 255
+ S ++ ++ +SR D + + +E + LR+ + L
Sbjct: 198 KCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQL 257
Query: 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315
+ L+ + + + M G PD+ T D + E M
Sbjct: 258 SYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKM 317
Query: 316 KHESVGPDLVTYGCVVDAYLDKRL---GRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGD 372
V PD Y ++ KR+ +NL + + + + T + + F + D
Sbjct: 318 AERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTT--LIDGFVRSD 375
Query: 373 FHSSSEAFLEFKRQRKW----TYRKLIAVYLK 400
S + EF ++ Y +I Y K
Sbjct: 376 KLSDARKIFEFMEEKACPDIVAYNVMIKGYCK 407
>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Brachypodium distachyon]
Length = 556
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 130/320 (40%), Gaps = 39/320 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ R++ L+ +++ G+ P T L+ + G + + + V++E+
Sbjct: 188 SLLDSYTRQRNDDAVAGLLKEMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRK 247
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ V S +++AY R G + D+ + Y I+ F K GQ+E
Sbjct: 248 NVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAA 307
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE-------MET-------------AYG 208
E L +M RG + N I Y R G + + ME A G
Sbjct: 308 EMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACG 367
Query: 209 RLKRSR--------HLIDKEGIRA--VSFTYL-----KERKFFMLGEFLRDV-GLGRKDL 252
+ +R H++ ++G+ VS+T L KE RD+ G G +
Sbjct: 368 LCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRP- 426
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+ +N+++ Y N ++ +R M + G PD+ T+ V ++ D+ L L
Sbjct: 427 SVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTY-AGLVHGHCVNGKVDVALRL 485
Query: 313 -EHMKHESVGPDLVTYGCVV 331
E MKH P++V Y +V
Sbjct: 486 FEEMKHRGTKPNVVAYTALV 505
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 50/269 (18%), Positives = 101/269 (37%), Gaps = 35/269 (13%)
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157
A ++ + + S ++ S ++D + + G ++ ++D++ L Y+ +
Sbjct: 132 ADLLGKAIASCPASVTPLSASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLD 191
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
+ +Q + + LKEM +RG T + SR G ++++E Y +KR
Sbjct: 192 SYTRQRNDDAVAGLLKEMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAG 251
Query: 218 DKEGIRAVSFTYLK----------------------ERK-------FFMLGE------FL 242
D AV Y + ER F +G+ L
Sbjct: 252 DVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLL 311
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
D+ L +++N ++ Y + ++ M + G D+ T+N A R+
Sbjct: 312 ADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRV 371
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ D L M + V P+ V+Y ++
Sbjct: 372 NRMEDAKKLLHIMAEKGVAPNYVSYTTLI 400
>gi|358345906|ref|XP_003637015.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358347053|ref|XP_003637577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502950|gb|AES84153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503512|gb|AES84715.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 823
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/360 (18%), Positives = 128/360 (35%), Gaps = 60/360 (16%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+++K + L N + G++P NST L+ Y+ G + EA + S
Sbjct: 152 LGKERKWRVLESLWNEMNENGVVPVNSTYGTLIDVYSKGGLIEEALAWLLRMQSEGMEPD 211
Query: 114 VQVLSDLMDAYGRIGCFNEIIS-------------------------IIDQVSCRNADLL 148
+ ++ Y R G F + + ++VS N L
Sbjct: 212 EVTMGVVVQLYKRAGEFQKAEEFFLRWSRGEPLRIEIDHNPADTRRHVCNEVSHVNVCLN 271
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
Y+ I +GK GQ+ ++ M+ +G + + T N I Y G + E+ +
Sbjct: 272 SHTYNTLIDTYGKAGQIRVVYEIFARMIKQGVVLTTVTFNTMIHLYGNHGRIREVSSLLK 331
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
R++ R L D + TY N+L ++L+ N
Sbjct: 332 RMEELRCLPD-------TRTY------------------------NILISVLVKHNNINL 360
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
K F +M EA PD+ ++ A+S M + ++ M + D T
Sbjct: 361 ATKY----FAKMKEAFLEPDVVSYRTLLYAYSTRKMVQEAEEIVQEMDERGLKIDEFTQS 416
Query: 329 CVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRK 388
+ Y++ + + + D + +A+G+ + +E ++RK
Sbjct: 417 ALTRMYVESNMLEKSWLWFMRFHQDGNITSCCYSANIDAYGEKGYTLEAEKVFMCCKERK 476
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 111/256 (43%), Gaps = 23/256 (8%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ L KPH+A +N ++ GL+ D CA++ + G + A+ ++ E++
Sbjct: 519 SSLIHILASADKPHIAKPYLNKMQVAGLVSDCIPYCAVISSFGKLGQLNMAEGLYNEMIG 578
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL--PEVYSRAISCFGKQGQL 165
+ L++A+ + + S +D++ R A + +++ + + K G L
Sbjct: 579 HDVEPDAIIFGALINAFADVANVKKANSYVDRM--RKAGFIGNQAIHNTLMKLYTKLGYL 636
Query: 166 ELMEN--TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+ + TL + +G SV S+ N I Y+ + + + + LK++ I E
Sbjct: 637 KEAQEIYTLLQSSDQGPSVFSS--NCMIDLYTERLMVEQAKEIFESLKKNS--IANEFSY 692
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE------- 276
A+ K K L E + K++G L + LLSY + S+ R
Sbjct: 693 AMMLCMYK--KIGRLDEAFQIA----KEMGKLGFLTDLLSYNNVLGLYSMDRRLWEAKKT 746
Query: 277 FMRMSEAGFHPDLTTF 292
F M E+G PD TF
Sbjct: 747 FKEMIESGIQPDDFTF 762
>gi|242078641|ref|XP_002444089.1| hypothetical protein SORBIDRAFT_07g007540 [Sorghum bicolor]
gi|241940439|gb|EES13584.1| hypothetical protein SORBIDRAFT_07g007540 [Sorghum bicolor]
Length = 942
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 114/292 (39%), Gaps = 46/292 (15%)
Query: 58 KKPHLAHQLVNT---VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
+K L +L +T ++ + D + ++ C V E +++E++ + +
Sbjct: 671 QKCGLLEKLADTYYWIRKSQVECDEAMYNCIINCCGRAIPVDELSRIFDEMIQQGHLANT 730
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRN-ADLLPEVYSRAISCFGKQGQLELMENTLK 173
L+ L+D YG+ G FN + + AD++ Y+ I+ + K G M ++
Sbjct: 731 VTLNVLLDIYGKAGLFNRAEKVFIMARKQGLADIIS--YNTIIAAYAKSGNFHSMNYFVQ 788
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
M GF V N + Y + G L E + ++KR++ D +TY
Sbjct: 789 MMQDAGFPVSPEAYNCMLDAYGKAGQLEEFASVLQKMKRAKCKFDH-------YTY---- 837
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
N+++ Y ++ + + + G PDL ++N
Sbjct: 838 ------------------------NIMINIYGRRGWIEDVSNVLAELKDRGVVPDLYSYN 873
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345
A+ M D ++ M+ + + PD VTY ++ A L RN +F
Sbjct: 874 TLIKAYGIARMPEDAVKLMQEMRIKGISPDRVTYANLIAA-----LQRNENF 920
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P+ ST LM+ Y G + EA+ ++++ + + + V S ++ Y R+G F +
Sbjct: 274 PNLSTFGMLMVLYQKTGKLSEAEFTFQKMRNCN-IKCVNAYSAMITLYTRLGLFAKSEDT 332
Query: 137 IDQVSCRNADLLP--EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
I+ ++ N L+P E + ++ + +QG++E E L+ MV GF+++ N I Y
Sbjct: 333 INLMN--NDGLVPNMENWLVRLNVYCQQGKMEEAELVLQSMVDEGFTLNIVAYNTLITGY 390
Query: 195 SR 196
+
Sbjct: 391 GK 392
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 17/177 (9%)
Query: 42 EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVV 101
E +C ++ GR ++ + + +G L + TL L+ Y G A+ V
Sbjct: 695 EAMYNC--IINCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAGLFNRAEKV 752
Query: 102 WEELLSSSFVLS-VQVLSDLMD------AYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154
F+++ Q L+D++ AY + G F+ + + + + PE Y+
Sbjct: 753 --------FIMARKQGLADIISYNTIIAAYAKSGNFHSMNYFVQMMQDAGFPVSPEAYNC 804
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
+ +GK GQLE + L++M D T N I Y R G + ++ LK
Sbjct: 805 MLDAYGKAGQLEEFASVLQKMKRAKCKFDHYTYNIMINIYGRRGWIEDVSNVLAELK 861
>gi|410110115|gb|AFV61137.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
hederifolia]
Length = 364
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 132/334 (39%), Gaps = 43/334 (12%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V +++ G+ K A L++ +K+ G++P+ ++ L+ Y N
Sbjct: 14 KRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKF 73
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI---------ISIIDQVSCRN-- 144
LEA V+ E+ +L + + ++D YG++G E + I V N
Sbjct: 74 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 133
Query: 145 ------ADLLPE------------------VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
A+L E Y+ + +GK + E N ++EM SRG
Sbjct: 134 LRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGI 193
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+S T + I + + G L + +L+ S ID+ + + Y +
Sbjct: 194 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKR 253
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L + L R D N+ + + AG +++ F + +AG D+T F S
Sbjct: 254 LLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLS 309
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ + M+ PD V++AY
Sbjct: 310 KYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAY 343
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 105/260 (40%), Gaps = 6/260 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 95 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 154
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
S +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 155 RKSIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 214
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LKR ++ I ++
Sbjct: 215 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILA 274
Query: 227 FTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
E ++ F + + G KD+ + LLS K ++ F +M G+
Sbjct: 275 GAGRIEEATYV---FRQAIDAGEVKDITVFERMIHLLSKYK--KYSNVVEVFDKMRGLGY 329
Query: 286 HPDLTTFNIRAVAFSRMSMF 305
PD I A+ ++ F
Sbjct: 330 FPDSDVIAIVLNAYGKLQEF 349
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 10 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 69
Query: 337 KR 338
+
Sbjct: 70 NK 71
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 109/262 (41%), Gaps = 42/262 (16%)
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQV--SCRNADLLPEVYSRAISCFGKQGQLEL 167
+ +SV + + ++ + R G + +S++D++ +C +AD++ +Y+ I CFGK G++++
Sbjct: 229 YEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIV--LYNVCIDCFGKAGKVDM 286
Query: 168 MENTLKEMVSRGFSVDSAT----------GN----------------------AFIIYYS 195
E+ S G D T GN A+
Sbjct: 287 AWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIM 346
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL 255
+GS + + AY L+R + + A + K LGE LR +KD
Sbjct: 347 GYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPN 406
Query: 256 L--WNLL--LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
L +N+L +L AG + R+ M+ EAG P++ T NI + +
Sbjct: 407 LSTYNVLIDMLCKAGEVEAAFKVRDAMK--EAGLFPNVMTVNIMIDRLCKAKKLDEACSI 464
Query: 312 LEHMKHESVGPDLVTYGCVVDA 333
E M H+ PD VT+ ++D
Sbjct: 465 FEGMNHKICSPDEVTFCSLIDG 486
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSS 108
++ G+ K +A + + +KS GLLPD+ T +++ LC N + EA ++E++ +
Sbjct: 275 IDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNR--LDEAVEIFEQMEQN 332
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V + ++ YG G F+E S++++ R +P V Y+ ++C GK+G+L
Sbjct: 333 RNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGC--IPSVIAYNCILTCLGKKGRLG 390
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
T +EM + + + +T N I + G E+E A+
Sbjct: 391 EALRTFEEM-KKDAAPNLSTYNVLIDMLCKAG---EVEAAF 427
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 52/287 (18%), Positives = 117/287 (40%), Gaps = 6/287 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ L + KK A + + + PD T C+L+ G V +A ++E++L S
Sbjct: 448 MIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSD 507
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + V + L+ ++ + G + I ++ R + + + C K G+
Sbjct: 508 KIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGR 567
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+E+ SRGF D + + I + G E + +K ++D +
Sbjct: 568 ALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGF 627
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA---GFH 286
K K + L ++ + + + ++ A K+ L +M EA G
Sbjct: 628 CKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLA---KIDRLDEAYMLFEEAKSNGLE 684
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
++ ++ F ++ + +L +E + + + P++ T+ C++DA
Sbjct: 685 LNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDA 731
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 115/282 (40%), Gaps = 12/282 (4%)
Query: 32 ARKIIRYRKQEGFV-DCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
R + K GF+ D S L+ L + ++L +K +G + D +
Sbjct: 566 GRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFID 625
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ +G V +A + EE+ + +V ++D +I +E + ++ +L
Sbjct: 626 GFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLEL 685
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
+YS I FGK G+++ ++E++ +G + + T N + + + E +
Sbjct: 686 NVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCF 745
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+K + + + + RKF F+ + ++ GL + + + L+
Sbjct: 746 QNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGL-KPNTITYTTMIAGLAK 804
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFN--IRAVAFSRMSM 304
AGN S F R G PD ++N I +++SR +M
Sbjct: 805 AGNIAEAS--SLFERFKANGGVPDSASYNAIIEGLSYSRRAM 844
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 108/293 (36%), Gaps = 20/293 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ + + H++ + G PD L A M C G + + ++EE+ S
Sbjct: 517 SLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSR 576
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F+ V S L+ + G E + + + L Y+ I F K G++
Sbjct: 577 GFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKA 636
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS---------RHLIDK 219
L+EM ++G T + I ++ L E + K + LID
Sbjct: 637 YQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDG 696
Query: 220 EG-IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
G + + YL + E L GL WN LL + ++ F
Sbjct: 697 FGKVGRIDEAYL-------IMEELMQKGLTPN---VYTWNCLLDALVKAEEINEALVCFQ 746
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M P+ T++I R+ F + + M+ + + P+ +TY ++
Sbjct: 747 NMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMI 799
>gi|168000535|ref|XP_001752971.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695670|gb|EDQ82012.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 391
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 2/224 (0%)
Query: 71 KSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
K G PD T AL+ Y G + + + + EL + V + + Y R
Sbjct: 114 KEAGFSPDRHTYNALIWGYMRAGQLSQMEETFNELQAGECKADVITYNAQIIGYARANAV 173
Query: 131 NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM-VSRGFSVDSATGNA 189
N++ ++ + + V I + + E MEN LK M V+ G S +
Sbjct: 174 NKMEAVFSSMQAAGIPINAMVGEILIEVYSRTKHFEKMENALKIMDVTPGVQYGSRVHSM 233
Query: 190 FIIYYSRFGSLTEMETAYGRL-KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG 248
I Y+ L EME A R+ + R + + A+ Y + ++ L + + V
Sbjct: 234 VIESYADANKLDEMEAAISRMFQNKRMFSSPKSLHALIMAYSRAGEYGRLAKTMEVVKGA 293
Query: 249 RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
L + ++N+L+ Y + +++ F M +A P TF
Sbjct: 294 GWILQSSIYNILISEYGKGGHLDRMEQVFREMMDASCPPSFETF 337
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 116/296 (39%), Gaps = 52/296 (17%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV---VWEELLSSSFVLSVQVLSDLM 121
Q+ N KS+ N A M+ +A G + + Q+ +++E+ + + L+
Sbjct: 1 QVFNWKKSKLGWEANPKEYAKMISFA--GRISQPQLAADLFDEMEKRGIKKTAVSFNALI 58
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRG 179
+YGR ++ + + + + N D P + Y+ IS + + G E M+ + G
Sbjct: 59 HSYGRNNEAHKALQLFEDMKATN-DCQPTLVTYNTLISMYSRMGATEEMKKLFLDCKEAG 117
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
FS D T NA I Y R G L++ME + L+ G
Sbjct: 118 FSPDRHTYNALIWGYMRAGQLSQMEETFNELQ--------------------------AG 151
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
E DV + +N ++ YA + ++ F M AG + I +
Sbjct: 152 ECKADV---------ITYNAQIIGYARANAVNKMEAVFSSMQAAGIPINAMVGEILIEVY 202
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGC-----VVDAYLDKRLGRNLDFGLSKM 350
SR F + +L+ M V P V YG V+++Y D ++ +S+M
Sbjct: 203 SRTKHFEKMENALKIM---DVTPG-VQYGSRVHSMVIESYADANKLDEMEAAISRM 254
>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
lycioides]
Length = 429
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/353 (19%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G++
Sbjct: 54 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVM 113
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 114 PNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 173
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N Y+ + +GK
Sbjct: 174 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGK 233
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 234 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVL 293
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L ++ K N+ + + AG +++ F +
Sbjct: 294 YQTMIVAYERAGLVAHAKRLLHEL----KSPDNIPRDTAIHILAGAGRIEEATYVFRQAI 349
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 350 DAGEVKDITVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAY 402
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 110/294 (37%), Gaps = 35/294 (11%)
Query: 41 QEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100
Q + ++ L R+ A +++ + +G PD T L+ Y G +A V
Sbjct: 281 QPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALV 340
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160
+ E++ + SV + L+++ + N + DQ+ R Y+ I F
Sbjct: 341 IHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFS 400
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
+QG L L EM GFS T NAFI + L ME A G ++ +++K
Sbjct: 401 RQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHC---VLERMEEALGVVQE---MVEK- 453
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
G+ +Y ++ F R L R F+MK M
Sbjct: 454 GLAPDVVSYST-----IISGFCRKGELDRA-----------------FQMKQ------EM 485
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
E G PD T++ M + + M + PD TY +++AY
Sbjct: 486 VEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAY 539
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 11/198 (5%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
+++R V +L+ + + + + A + + ++ GL P+ T L+ ++ G
Sbjct: 344 EMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQG 403
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV-- 151
+ EA + E+ S F SV + + + + E + ++ ++ L P+V
Sbjct: 404 LLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMV--EKGLAPDVVS 461
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
YS IS F ++G+L+ +EMV +G S D+ T Y S L EM
Sbjct: 462 YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVT------YSSLIQGLCEMRRLTEACD 515
Query: 212 RSRHLIDKEGIRAVSFTY 229
S+ ++D G+ FTY
Sbjct: 516 LSQEMLDM-GLPPDEFTY 532
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/225 (18%), Positives = 92/225 (40%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
+V + L+DAY ++G +E ++ +S + Y+ I+ ++G ++ L
Sbjct: 248 NVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEIL 307
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
+EM +GF+ D T N + Y + G+ + + + R+ A+ + K
Sbjct: 308 EEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKA 367
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
R EF + + + L+ ++ + R M+E+GF P + T+
Sbjct: 368 RNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 427
Query: 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
N + + ++ M + + PD+V+Y ++ + K
Sbjct: 428 NAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRK 472
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 121/311 (38%), Gaps = 37/311 (11%)
Query: 46 DCASLVEDLGRKKKPHL--AHQLVNTV---KSEGLLPD----NSTLCALMLCYANNGFVL 96
+ +S V DL K HL Q VNT+ KS G +P NS L A++ + L
Sbjct: 139 NSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIV--RSRGSVKL 196
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------CFNEIISIIDQVSCRNADLLP 149
A+ V+ E++ S +V + L+ + +G CF E+ ++ C LP
Sbjct: 197 SAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEM----ERNGC-----LP 247
Query: 150 EV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
V Y+ I + K G+++ LK M S+G + + N I R GS+ E
Sbjct: 248 NVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEIL 307
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKF----FMLGEFLRDVGLGRKDLGNLLWNLLLLS 263
+ D+ + Y KE F + E +R+ G+ + + L+ S
Sbjct: 308 EEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRN-GVSPSVV---TYTALINS 363
Query: 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+ F +M G P+ T+ FSR + + + L M P
Sbjct: 364 MCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPS 423
Query: 324 LVTYGCVVDAY 334
+VTY + +
Sbjct: 424 VVTYNAFIHGH 434
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ L + K+ H+L+NT+K G PD+ T AL+ + G + EA + +
Sbjct: 242 ILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEG 301
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR---NADLLPEV--YSRAISCFGKQGQ 164
+VL ++ S L+D R ++E+ Q CR A + P+V Y+ I F + G
Sbjct: 302 YVLGIKGYSSLIDGLFRAKRYDEV-----QEWCRKMFKAGIEPDVVLYTILIRGFCEVGM 356
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
++ N L +M RG S D+ NA I + G L
Sbjct: 357 VDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLL 392
>gi|255661196|gb|ACU25767.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 426
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 126/321 (39%), Gaps = 39/321 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ G+ K A L+ +++ G++PD + L+ Y N +EA V+ E+
Sbjct: 84 SMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYVENKKFIEALSVFAEMREI 143
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEI---------ISIIDQVSCRN--------ADLLPE- 150
+L + + ++D YG++G E + + V N A+L E
Sbjct: 144 KCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSYNTLLRVYSDAELFGEA 203
Query: 151 -----------------VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
Y+ + +GK + E N ++EM SRG ++ T + I
Sbjct: 204 XHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISI 263
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
+ + G L + +L+ S ID+ + + Y + L ++ K
Sbjct: 264 WGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHEL----KTPD 319
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
N+ + + AG+ +M+ F + +AG D+T F FS+ + ++ +
Sbjct: 320 NIPRDTAIQILAGSGRMEEATWVFRQAIDAGEVKDITVFEQMIDLFSKYRKYSNVVEVFD 379
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
M+ PD V++AY
Sbjct: 380 KMRGLGYFPDSNVIALVLNAY 400
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/180 (18%), Positives = 77/180 (42%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L +++ G+ P+ + L+ Y++ EA ++ +
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVVSYNTLLRVYSDAELFGEAXHLFRLMQ 211
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 212 RKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLD 271
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G ++ + LK ++ I+ ++
Sbjct: 272 RAAMLFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKTPDNIPRDTAIQILA 331
>gi|108707772|gb|ABF95567.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
Length = 443
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/302 (19%), Positives = 122/302 (40%), Gaps = 39/302 (12%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P T L+L +G A+ +++E+L + ++ + L+ AY R G ++ +
Sbjct: 87 PKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRL 146
Query: 137 IDQVSCRNADLLPEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ + P+VY S I + ++++ K+M R + ++ T N + Y
Sbjct: 147 LADMKASPV-CQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGY 205
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
R G L +ME +L L D + D+
Sbjct: 206 GRAGRLDDMEK-------------------------------VLSAML-DSTTSKPDVWT 233
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ N++L + +++S+++ + + G P+ T NI A+ + M+ + +E+
Sbjct: 234 M--NIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEY 291
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGK-GD 372
M+ + T+ V++A+ D +N++ ++M + P T + FG G
Sbjct: 292 MRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDTKTFCCLINGFGNAGL 351
Query: 373 FH 374
FH
Sbjct: 352 FH 353
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 107/259 (41%), Gaps = 12/259 (4%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR +P A L + + +G P AL+ Y NG + +A + ++ +S
Sbjct: 99 LGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQP 158
Query: 114 -VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMEN 170
V S ++ A F+ + ++ ++ R+ + P ++ I S +G+ G+L+ ME
Sbjct: 159 DVYTYSTIIKACVDASRFDIVDAMYKDMADRS--IAPNTVTQNIVLSGYGRAGRLDDMEK 216
Query: 171 TLKEMVSRGFS-VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L M+ S D T N + + G + ME Y + + + + + Y
Sbjct: 217 VLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAY 276
Query: 230 LKER---KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K+R K + E++R + +N ++ ++A K+++ F +M G
Sbjct: 277 GKKRMYDKMSAVMEYMRKLAF---PWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMK 333
Query: 287 PDLTTFNIRAVAFSRMSMF 305
PD TF F +F
Sbjct: 334 PDTKTFCCLINGFGNAGLF 352
>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 120/294 (40%), Gaps = 33/294 (11%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+++ ++ EG+ + T L+ ++N G + EAQ ++EE+ V V + ++
Sbjct: 285 EILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCN 344
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
R G + + D+++ + L+P Y I K GQ+E + + EM +G +
Sbjct: 345 CRSGNVKRALVLFDEMT--DKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDL 402
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY------------L 230
+ N I Y G + E R + +++K+G+ + F Y
Sbjct: 403 NPVIFNTLIDGYCESGMVDEA-------LRLQVVMEKKGLESDVFAYNSIASGLCKLNRK 455
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
E K + R V L+ + GNF +R F M E G P++
Sbjct: 456 DEAKGLLFSMVERGVSPNTMSFTTLID---IYCKEGNF--VEAKRVFREMEEKGNVPNII 510
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT-----YGCVVDAYLDKRL 339
T+N+ +S+ + H + +++ + PD+ T +G +D +D L
Sbjct: 511 TYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMAL 564
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 55/199 (27%)
Query: 144 NADLLPEVYSRAISCFG--KQGQLELMENTLKEMVSRGFSVDSATGNAFII-YYSR--FG 198
N D+ VYS I G K+G +E+ + E+ ++G + T NAFI Y+ R G
Sbjct: 222 NLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLG 281
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
+ E+ T L++KEG+ TY
Sbjct: 282 GVAEILT----------LMEKEGVACNVVTY----------------------------T 303
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF------NIRAVAFSRMSMFWDLHLSL 312
LL+ ++ K++ QR F M E G D+ + N R+ R + +D
Sbjct: 304 LLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFD----- 358
Query: 313 EHMKHESVGPDLVTYGCVV 331
M + + P TYG ++
Sbjct: 359 -EMTDKGLIPSAHTYGALI 376
>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Vitis vinifera]
Length = 1442
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/277 (19%), Positives = 119/277 (42%), Gaps = 3/277 (1%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTL-CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
P AH L++ + +GLL D+ ++ ++ Y +A+ + L ++ +V +
Sbjct: 727 PETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWN 786
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+ AY GC+ +I + + + + + G+L+ + ++E+
Sbjct: 787 ALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDM 846
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF + ++ + ++ G++ E++ Y +K + + R + K ++ +
Sbjct: 847 GFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDV 906
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+ ++ + R +WN +L Y G K + + + EAG PD T+N +
Sbjct: 907 EAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILM 966
Query: 299 FSRMSMFWDLHLSLEH-MKHESVGPDLVTYGCVVDAY 334
+ R + LSL H M+ + P L TY ++ A+
Sbjct: 967 YCR-DRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAF 1002
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 99/241 (41%), Gaps = 14/241 (5%)
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
+LA +L+N V+ G+ PD T L+ + + EA V+ ++++ + + +
Sbjct: 276 NLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAM 335
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSR 178
+ YGR G E + + + LP+ Y+ + F ++G ++ ++ ++MV
Sbjct: 336 ISVYGRCGMSREAGRLFKDLESKG--FLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKM 393
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KER 233
GF D T N I Y + G Y +K S D AV++T L K
Sbjct: 394 GFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPD-----AVTYTVLIDSLGKAN 448
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
E + ++ R ++ L+ YA K + F M +G PD ++
Sbjct: 449 MIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYS 508
Query: 294 I 294
+
Sbjct: 509 V 509
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 116/308 (37%), Gaps = 35/308 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + NT+ +G P ++ LM +G + E VV +EL F +S ++ ++D
Sbjct: 801 ARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLD 860
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A+ G E+ I + +Y I K ++ +E + EM F
Sbjct: 861 AFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKP 920
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLG 239
D + N+ + Y+ G + Y ++ + D++ + Y ++R+ L
Sbjct: 921 DLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLM 980
Query: 240 EFLRDVGL-----GRKDLGNLLWNLLLLSYAGNF------KMKSLQREFMR--------- 279
+R VGL K L + L ++ A K L R F
Sbjct: 981 HEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNS 1040
Query: 280 ------------MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
M EAG P + T ++ V++S + L+++K E + + Y
Sbjct: 1041 GNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPY 1100
Query: 328 GCVVDAYL 335
V+DAYL
Sbjct: 1101 SSVIDAYL 1108
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 79/181 (43%), Gaps = 4/181 (2%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
++ +R Q +++ GR A +L ++S+G LPD T +L+ +A G
Sbjct: 320 MVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGN 379
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID--QVSCRNADLLPEVY 152
V + + + E+++ F + ++ YG+ G + + ++S R+ D + Y
Sbjct: 380 VDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAV--TY 437
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ I GK ++ + EM++ T +A I Y++ G E E + + R
Sbjct: 438 TVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLR 497
Query: 213 S 213
S
Sbjct: 498 S 498
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 106/303 (34%), Gaps = 49/303 (16%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL--ELMEN 170
+VQV + +M Y R G F ++ ++D + R + ++ I+ K G + L
Sbjct: 221 TVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIE 280
Query: 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230
L E+ G D T N I SR +L E Y + R D
Sbjct: 281 LLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPD------------ 328
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLLW--NLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
LW N ++ Y + R F + GF PD
Sbjct: 329 -------------------------LWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPD 363
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGL- 347
T+N AF+R + E M G D +TY ++ Y KR +L F L
Sbjct: 364 AVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMY-GKRGQHDLAFQLY 422
Query: 348 SKMNLDD-SPVVSTDPYVFEAFGKGD-FHSSSEAFLEFKRQRK----WTYRKLIAVYLKK 401
S M L SP T + ++ GK + ++E E R T+ LI Y K
Sbjct: 423 SDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKA 482
Query: 402 QLR 404
R
Sbjct: 483 GKR 485
>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
Length = 826
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 84/397 (21%), Positives = 158/397 (39%), Gaps = 26/397 (6%)
Query: 24 THPKNGDLARKII-RYRKQEGFVD---CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDN 79
H ++ARK+ + G VD + + L ++ K L+ +G +P+
Sbjct: 178 VHHGKVEIARKVYDEMVDRNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNI 237
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
L+ Y NG + A ++++EL F+ +V+ +++A+ + G F + ++ +
Sbjct: 238 VFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVE 297
Query: 140 VSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199
+ R + ++++ I K G + ++ M+ G D AT N I G
Sbjct: 298 MKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGK 357
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
+ E E R +K + + K ++ E L ++ L + +
Sbjct: 358 VREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGA 417
Query: 260 LL--LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
L+ L AG + R+ +M E G PD +N+ + F L M
Sbjct: 418 LVHGLVVAGEVDVALTVRD--KMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLD 475
Query: 318 ESVGPDLVTYGCVVDAYLDKRLGRNLD-----FGLSKMNLDDSPVVSTDPYVFEAFGKGD 372
++V PD +VD ++ R G NLD F L+ D+ VV + + G
Sbjct: 476 QNVTPDAFVNATLVDGFI--RHG-NLDEAKKLFQLTIERGIDTSVVECNAMI---KGYCK 529
Query: 373 FHSSSEAFLEFKR-------QRKWTYRKLIAVYLKKQ 402
+ ++A L FKR ++TY +I Y+K+
Sbjct: 530 YGMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQN 566
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 59/319 (18%), Positives = 117/319 (36%), Gaps = 18/319 (5%)
Query: 22 HQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNST 81
H + D R +I + +L+ K K A +L+ GL P+ +
Sbjct: 320 HGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFS 379
Query: 82 LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141
L+ ++ NG + A + E+ L + L+ G + +++ D++
Sbjct: 380 YTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMM 439
Query: 142 CRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199
R +LP+ +Y+ +S K+G+ + L EM+ + + D+ + + R G+
Sbjct: 440 ERG--ILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGN 497
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN----- 254
L E + + L + GI K + + D L K + N
Sbjct: 498 LDEAKKLF-------QLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVHSP 550
Query: 255 --LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
++ ++ Y ++ R F M + P++ TF F R
Sbjct: 551 DEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVF 610
Query: 313 EHMKHESVGPDLVTYGCVV 331
E M+ P++VTY ++
Sbjct: 611 EEMRSFGFEPNVVTYTILI 629
>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Vitis vinifera]
Length = 625
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 120/294 (40%), Gaps = 33/294 (11%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+++ ++ EG+ + T L+ ++N G + EAQ ++EE+ V V + ++
Sbjct: 281 EILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCN 340
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
R G + + D+++ + L+P Y I K GQ+E + + EM +G +
Sbjct: 341 CRSGNVKRALVLFDEMT--DKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDL 398
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY------------L 230
+ N I Y G + E R + +++K+G+ + F Y
Sbjct: 399 NPVIFNTLIDGYCESGMVDEA-------LRLQVVMEKKGLESDVFAYNSIASGLCKLNRK 451
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
E K + R V L+ + GNF +R F M E G P++
Sbjct: 452 DEAKGLLFSMVERGVSPNTMSFTTLID---IYCKEGNF--VEAKRVFREMEEKGNVPNII 506
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT-----YGCVVDAYLDKRL 339
T+N+ +S+ + H + +++ + PD+ T +G +D +D L
Sbjct: 507 TYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMAL 560
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 55/199 (27%)
Query: 144 NADLLPEVYSRAISCFG--KQGQLELMENTLKEMVSRGFSVDSATGNAFII-YYSR--FG 198
N D+ VYS I G K+G +E+ + E+ ++G + T NAFI Y+ R G
Sbjct: 218 NLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLG 277
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
+ E+ T L++KEG+ TY
Sbjct: 278 GVAEILT----------LMEKEGVACNVVTY----------------------------T 299
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF------NIRAVAFSRMSMFWDLHLSL 312
LL+ ++ K++ QR F M E G D+ + N R+ R + +D
Sbjct: 300 LLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFD----- 354
Query: 313 EHMKHESVGPDLVTYGCVV 331
M + + P TYG ++
Sbjct: 355 -EMTDKGLIPSAHTYGALI 372
>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16420, mitochondrial; Flags: Precursor
gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 535
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C LV+ L +K A+++++ + S GL+P+ T ++ Y G + A+ V EE+L
Sbjct: 194 CNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEML 253
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + LMD Y ++G F+E +++D + + Y I K+ +
Sbjct: 254 DRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSG 313
Query: 167 LMENTLKEMVSRGFSVDSA 185
N EM+ R F DS+
Sbjct: 314 EARNMFDEMLERSFMPDSS 332
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+ +L Y M+S +R M + G++PD TT+ + + ++ F + ++ M+
Sbjct: 229 YTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDME 288
Query: 317 HESVGPDLVTYGCVVDAYLDKR 338
+ P+ VTYG ++ A ++
Sbjct: 289 KNEIEPNEVTYGVMIRALCKEK 310
>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 808
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 101/249 (40%), Gaps = 4/249 (1%)
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
Y G + A +EL + +V+ L++ + + G F + ++ +++ R ++
Sbjct: 246 YCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMN 305
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
+V++ I K G + T++ M G D T N I + + G + E +
Sbjct: 306 VKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLE 365
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFF-MLGEFLRDVGLGRK-DLGNLLWNLLLLSYAG 266
+ K L +K + Y K+ + G R +G K DL + + + G
Sbjct: 366 KAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHG 425
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ + RE +M E G PD +N+ + F + L L M +V PD+
Sbjct: 426 EIDVALMVRE--KMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYV 483
Query: 327 YGCVVDAYL 335
+ ++D ++
Sbjct: 484 FATLMDGFI 492
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 54/276 (19%), Positives = 105/276 (38%), Gaps = 48/276 (17%)
Query: 70 VKSEGLL---------PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
VK+ G+L PD + A + +G + A +V E+++ Q+ + L
Sbjct: 393 VKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVL 452
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLELMENTLKEMVSR 178
M + G F + ++ ++ RN P+VY A + F + G+L+ K ++ +
Sbjct: 453 MSGLCKNGRFPAMKLLLSEMLDRNVQ--PDVYVFATLMDGFIRNGELDEAIKIFKVIIRK 510
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
G NA I + +FG +T+ + ++K H D+ +TY
Sbjct: 511 GVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDE-------YTY--------- 554
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+ ++ Y M S + F +M + F P++ T+
Sbjct: 555 -------------------STVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLING 595
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F + + MK + P++VTY +V +
Sbjct: 596 FCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGF 631
>gi|226500056|ref|NP_001147821.1| pentatricopeptide repeat 2 [Zea mays]
gi|195613946|gb|ACG28803.1| PPR2 [Zea mays]
Length = 562
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/303 (19%), Positives = 125/303 (41%), Gaps = 41/303 (13%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P T L++ +G A +++E+L + ++ + L+ AY R +E + +
Sbjct: 206 PKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSCLLDEALQL 265
Query: 137 IDQVSCRNADLL-PEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
++ + +++ L P+VY S I + +L + K+M R S ++ T N +
Sbjct: 266 LNDM--KSSPLCQPDVYTYSTIIKACVDAARFDLTDTMYKDMAERSISPNTVTQNIVLSG 323
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
Y + G L +ME +L + L V + D+
Sbjct: 324 YGKAGRLDDMER-------------------------------VLSDMLDSVSC-KPDVW 351
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ N++L + +++ ++R + + G P+ T NI A+ + M+ + +E
Sbjct: 352 TM--NIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVME 409
Query: 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGK-G 371
HM+ + TY V++A+ + N++ ++M + P T + + F + G
Sbjct: 410 HMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDGFSRAG 469
Query: 372 DFH 374
FH
Sbjct: 470 QFH 472
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/339 (21%), Positives = 126/339 (37%), Gaps = 49/339 (14%)
Query: 38 YRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLE 97
Y +EG L+ LGR +P AHQL + + +G P AL+ Y + + E
Sbjct: 204 YHPKEGTY--MKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSCLLDE 261
Query: 98 AQVVWEELLSSSFVLS-VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
A + ++ SS V S ++ A F+ ++ ++ R+ + P ++ I
Sbjct: 262 ALQLLNDMKSSPLCQPDVYTYSTIIKACVDAARFDLTDTMYKDMAERS--ISPNTVTQNI 319
Query: 157 --SCFGKQGQLELMENTLKEMV-SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
S +GK G+L+ ME L +M+ S D T N + + G + ME Y + +
Sbjct: 320 VLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGY 379
Query: 214 RHLIDKEGIRAVSFTYLKER---KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ + + Y K R K + E +R + +N ++ ++A
Sbjct: 380 GVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRKLAF---PWTTATYNNVIEAFAEAGDA 436
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW------------------------ 306
+++ F +M G PD TF FSR F
Sbjct: 437 GNMEHAFNQMRSEGMRPDTKTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPVNTPFHNAV 496
Query: 307 -----------DLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ MKH PD TY +V+AY
Sbjct: 497 LGACARADDLVEMERVFRRMKHTQCEPDASTYSILVEAY 535
>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Vitis vinifera]
Length = 666
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 112/278 (40%), Gaps = 5/278 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + + AH+L+ + S+G PD + L+ G V EA+ L+ S
Sbjct: 187 LLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARE-----LAMS 241
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
F SV V + L++ + F E ++D++ + D Y+ I+ G +EL
Sbjct: 242 FTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSL 301
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L +M +RG S + T + I + G E + R+ R + + A+
Sbjct: 302 AVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGL 361
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+R + + ++ L+ YA + + M G HP++
Sbjct: 362 CSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNV 421
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ R SMF + +E+M+ E+ P+ VT+
Sbjct: 422 VAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTF 459
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 121/313 (38%), Gaps = 22/313 (7%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
D ++IR V +L+ L K+ A + N ++ G P+ T AL+ Y
Sbjct: 337 DFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGY 396
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
A G + A VW +++ +V + ++D R FN+ +I+ + N
Sbjct: 397 AKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNT 456
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF---IIYYSRFGSLTEMETA 206
++ I G+++ +M + G ++ T N ++ RFG A
Sbjct: 457 VTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGE------A 510
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFF----MLGEFLRDVG----LGRKDLGNLLWN 258
+G +K H GI TY + MLGE L +G G K + N
Sbjct: 511 FGLVKDMEH----RGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKP-DAITVN 565
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
+++ +Y K+ + R+S +HPD+ + + + L M E
Sbjct: 566 IVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSE 625
Query: 319 SVGPDLVTYGCVV 331
+ P++ T+ +V
Sbjct: 626 GISPNVATWNVLV 638
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 118/276 (42%), Gaps = 18/276 (6%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
+ ++ G+ PD T +L+ + G A+ +++E+ + V + L+DA +
Sbjct: 328 DEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKG 387
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
G + I+ Q+ + ++P V YS I F K G+ + N EM G ++D
Sbjct: 388 GQMDLAFEILAQMPVKR--IMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRV 445
Query: 186 TGNAFIIYYSRFGSLTEM-----ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ N + Y++ G E E A +K+ D A+ Y K+ K+ + +
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKK-----DVVTYNALLGGYGKQGKYDEVKK 500
Query: 241 FLRDVGLGRKD-LGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+ + R+ L NLL ++ L+ Y+ K F AG D+ ++ A
Sbjct: 501 VFTE--MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDA 558
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ M E + P++VTY ++DA+
Sbjct: 559 LCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAF 594
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 125/335 (37%), Gaps = 48/335 (14%)
Query: 43 GFVDCASLVEDLGRKKKPHLAHQLVN-TVKSEGLLPDNSTLCALML-CYANNGFVLEAQV 100
G DC ++ +LG + + A VK E + L + M+ G V A+
Sbjct: 195 GSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKR 254
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISC 158
++E + + +V S L+ AYGR G E IS+ + S + L P + Y+ I
Sbjct: 255 IFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFN--SMKEYGLRPNLVTYNAVIDA 312
Query: 159 FGKQG-QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR--- 214
GK G + + + EM G D T N+ + SR G + + R
Sbjct: 313 CGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQ 372
Query: 215 ------HLID---KEGIRAVSFTYLKERK-----------------FFMLGEF------- 241
L+D K G ++F L + F G F
Sbjct: 373 DVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLF 432
Query: 242 --LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+R +G+ L + +N LL Y + + M+ G D+ T+N +
Sbjct: 433 GEMRYLGIA---LDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGY 489
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ MK E V P+L+TY ++D Y
Sbjct: 490 GKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGY 524
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 13/175 (7%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
D+ R++ ++ V +L+ G++ K ++ +K E +LP+ T L+ Y
Sbjct: 465 DILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGY 524
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
+ G EA ++ E S+ V + S L+DA + G +S+ID+++
Sbjct: 525 SKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNV 584
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
Y+ I FG+ ++ S D + G + S +LTE E
Sbjct: 585 VTYNSIIDAFGRSATMDR-------------SADYSNGGSLPFSSSALSALTETE 626
>gi|224076898|ref|XP_002305039.1| predicted protein [Populus trichocarpa]
gi|222848003|gb|EEE85550.1| predicted protein [Populus trichocarpa]
Length = 800
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
YS I + K G L +M S+G + + + Y+ G +++ + R K
Sbjct: 342 YSELIRGYCKAGDLSKALALHNDMESKGIKTNCVIVSTILQYFCEKGMHSQVVEEFKRFK 401
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
R +D+ V K K L ++ + D+ + + L+ Y K+
Sbjct: 402 DLRIFLDEVSYNIVVDALCKLEKVDQAVALLDEMKGKQMDMDIMHYTTLINGYCHVGKLV 461
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
R F M G PD+ TFNI AFSR + + E+MK + + P+ +T+ ++
Sbjct: 462 DAFRVFEEMEGKGLEPDVVTFNILLAAFSRRGLANEALKLYEYMKSQDLKPNAITHNVMI 521
Query: 332 DA 333
+
Sbjct: 522 EG 523
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 20/276 (7%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+KS + PD+ T AL+ V +A+ + E+ S SV+ + L+DAYG G
Sbjct: 217 MKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ 276
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
+ +++ + + + + F K G++ L +M+ + + ++ N+
Sbjct: 277 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 336
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEF- 241
I Y G + ++K S G+ A TY + + E
Sbjct: 337 IIDAYIESGDTEQAFLLVEKMKNS-------GVSASIVTYNLLLKGLCRSSQIDEAEELI 389
Query: 242 --LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
LR+ GL R D+ + +N ++ + M++ G P L T++ A
Sbjct: 390 YTLRNQGL-RPDV--VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSAL 446
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ D+ + M H++V P YG +VDAY+
Sbjct: 447 ASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYV 482
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 106/258 (41%), Gaps = 5/258 (1%)
Query: 83 CALML-CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141
C+++L +G V +A+ V E L+ + V + + + L++ Y ++ I +Q+
Sbjct: 159 CSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMK 218
Query: 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
R+ Y+ I+ K + E+ + EM G T N I Y G L
Sbjct: 219 SRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLE 278
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
+ T +++ D +V + K K L D+ ++N ++
Sbjct: 279 KCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSII 338
Query: 262 LSY--AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
+Y +G+ + L E +M +G + T+N+ R S + + ++++
Sbjct: 339 DAYIESGDTEQAFLLVE--KMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 396
Query: 320 VGPDLVTYGCVVDAYLDK 337
+ PD+V+Y ++ A +K
Sbjct: 397 LRPDVVSYNTIISACCNK 414
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 102/271 (37%), Gaps = 14/271 (5%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
+G P+ T L+ G + E +V+ +E+ S S S L D R G
Sbjct: 80 DGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRT 139
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
++S+ + + L S ++ K G++ E L+ +V G + N I
Sbjct: 140 MLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLIN 199
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDV 245
Y + L + ++K SRH IR TY K + + ++
Sbjct: 200 GYCQVRDLRGAFCIFEQMK-SRH------IRPDHITYNALINGLCKLEMVTKAEDLVMEM 252
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
D +N L+ +Y +++ M + G D+ +F AF +
Sbjct: 253 EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKI 312
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
+ L+ M ++ V P+ Y ++DAY++
Sbjct: 313 PEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 343
>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial [Vitis vinifera]
gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
Length = 597
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
R +K A QL T+K E + P T L+ Y +A + E+ +V
Sbjct: 263 RSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVI 322
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
V + ++D+ G F E + ++++ Y+ + F K G L LK M
Sbjct: 323 VYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMM 382
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
+SRGF T N F Y+SR G E Y ++ S H D+
Sbjct: 383 ISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDR 426
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ L + K+ H+L+NT+K G PD+ T AL+ + G + EA + +
Sbjct: 242 ILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEG 301
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR---NADLLPEV--YSRAISCFGKQGQ 164
+VL ++ S L+D R ++E+ Q CR A + P+V Y+ I F + G
Sbjct: 302 YVLGIKGYSSLIDGLFRAKRYDEV-----QEWCRKMFKAGIEPDVVLYTILIRGFCEVGM 356
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
++ N L +M RG S D+ NA I + G L
Sbjct: 357 VDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLL 392
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 125/305 (40%), Gaps = 17/305 (5%)
Query: 32 ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN 91
A + + + V +++ L K P A + ++ EG+LPD TL +++ A
Sbjct: 353 AETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACAC 412
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151
G + + E + + V V V + L+D Y + C + + + +S +N V
Sbjct: 413 IGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKN------V 466
Query: 152 YSRAISCFGKQGQLELMENTL--KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
S G + E L ++M +S T + + +R G+L + +
Sbjct: 467 VSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIGALMRGKEIHAH 525
Query: 210 LKRSRHLIDKEGIRAVSFTYLK-ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
R+ D A+ Y++ RK L +F +KD+ WN+LL YA
Sbjct: 526 ALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQ----KKDV--TAWNILLTGYAQQG 579
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE-SVGPDLVTY 327
+ K F +M E HPD TF A S+ M + MK++ ++ P+L Y
Sbjct: 580 QAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHY 639
Query: 328 GCVVD 332
CVVD
Sbjct: 640 ACVVD 644
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 6/182 (3%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+ L+ + ++ +A L + + + +LPD T L+ Y N G V +A+ + EE+++
Sbjct: 480 SCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVA 539
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
S V + L+D + ++G E ++ +++ R Y+ I F + G+ +
Sbjct: 540 SDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTV 599
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
L+EMV G + T + I + G L E RL+R E +A F
Sbjct: 600 AYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERD------ENCKADMF 653
Query: 228 TY 229
Y
Sbjct: 654 AY 655
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 117/312 (37%), Gaps = 19/312 (6%)
Query: 28 NGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
NGD ++ Y ++L+ L + + A +L ++ PD T ALM
Sbjct: 294 NGDCPPDVVAY---------STLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMD 344
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ EAQ V E + + +V S L+D + G + + ++ R +
Sbjct: 345 GLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEP 404
Query: 148 LPEVYSRAISCF----GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
Y+ I F G L LME EM + G D T N I + G E
Sbjct: 405 NVVTYNSLIHGFCMTNGVDSALLLME----EMTATGCLPDIITYNTLIDGLCKTGRAPEA 460
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLL 262
+G +K D + + K + M D+ L + L +++ ++ L+
Sbjct: 461 NRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM-LKQAVLPDVVTFSTLVE 519
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
Y + +R M + PD+ T+ F ++ + L+ M P
Sbjct: 520 GYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQP 579
Query: 323 DLVTYGCVVDAY 334
++VTY ++DA+
Sbjct: 580 NVVTYTALIDAF 591
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 71/355 (20%), Positives = 139/355 (39%), Gaps = 23/355 (6%)
Query: 30 DLARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A K+ R + G V +L+ L R A++L++ ++ GL PD + L
Sbjct: 213 DTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTL 272
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
M G + A V+E+ + V S L+ + G +E + +++ R
Sbjct: 273 MAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKM--REN 330
Query: 146 DLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
P+V ++ + K +L+ + L+ M R + + T ++ I + G + +
Sbjct: 331 SCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDA 390
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN-------LL 256
+ + R+ GI TY F + + L +++ +
Sbjct: 391 QEVFKRMI-------VRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIIT 443
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+N L+ + R F M +PD+ T++ F ++ + M
Sbjct: 444 YNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDML 503
Query: 317 HESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGK 370
++V PD+VT+ +V+ Y + L + + L +M D SP V T + + F K
Sbjct: 504 KQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 558
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 16/200 (8%)
Query: 143 RNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ + L P V YS I F +Q +++ ++MV G + T N + R G +
Sbjct: 188 KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLM 247
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLG 253
E AY L R + G++ F+Y K K M + D G
Sbjct: 248 DE---AYELLDEMR----ERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPD 300
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ ++ L+ ++ + F +M E PD+ TF + + LE
Sbjct: 301 VVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLE 360
Query: 314 HMKHESVGPDLVTYGCVVDA 333
M+ + P+++TY ++D
Sbjct: 361 TMEDRNCTPNVITYSSLIDG 380
>gi|428179975|gb|EKX48844.1| hypothetical protein GUITHDRAFT_68401 [Guillardia theta CCMP2712]
Length = 396
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 120/283 (42%), Gaps = 10/283 (3%)
Query: 67 VNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW-EELLSSSFVLSVQVLSDLMDAYG 125
+ ++ E ++ D+ + L+ + N G + A+ + E+ +LS + + L+ YG
Sbjct: 104 LEIMQQENIMIDSYIVSILIDSFVNKGDMERAEAILREKEAEDPSLLSSHLYASLIKGYG 163
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
R G + +++++++ + + Y+ IS + +++ + TL++M G
Sbjct: 164 RKGMIDRCMALMEEMKSKQLKVSAVPYNTLISALLESKRMDQAQKTLEQMEEAGIQPSVV 223
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE----F 241
T I +S G++ + + A+ ++RS D A+ Y + + E
Sbjct: 224 TYTLLIHEFSSAGNVAQAQAAFETMERSGIFPDTGAYNALLDGYASLGQTARMKEIFWKL 283
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ-REFM----RMSEAGFHPDLTTFNIRA 296
++ + +++ LL S A + KS RE M ++ E P + FN
Sbjct: 284 MQSANKPSIETYSIMIKCLLHSDASDDAKKSENLRECMSFLDQIREENLKPSASFFNSLI 343
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
A + D E M+ E V PD++T+ ++D L L
Sbjct: 344 SACTLFGKPQDTFRMYEMMQLEDVAPDMITFNALMDCCLKHEL 386
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 118/302 (39%), Gaps = 36/302 (11%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
R + R+ E C ++ L ++P A+ + +KS+G++P+ + Y
Sbjct: 2 RGVARHAPDE--FTCTQHLKALALLRRPDQAYSYLTRMKSDGIMPNVWAYTTCIDAYCKV 59
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G + A+ + ++SS ++ + LM Y + G + ++ + N + +
Sbjct: 60 GDMEMAENIKSMMISSGIEPTLATFTTLMKGYAKYGNHEALEHYLEIMQQENIMIDSYIV 119
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
S I F +G +E E L+E + S+ S+ A +I YGR
Sbjct: 120 SILIDSFVNKGDMERAEAILREKEAEDPSLLSSHLYASLI------------KGYGR--- 164
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
+ +ID+ ++E K L + + +N L+ + + +M
Sbjct: 165 -KGMIDR------CMALMEEMKSKQL------------KVSAVPYNTLISALLESKRMDQ 205
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
Q+ +M EAG P + T+ + FS + E M+ + PD Y ++D
Sbjct: 206 AQKTLEQMEEAGIQPSVVTYTLLIHEFSSAGNVAQAQAAFETMERSGIFPDTGAYNALLD 265
Query: 333 AY 334
Y
Sbjct: 266 GY 267
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 125/305 (40%), Gaps = 17/305 (5%)
Query: 32 ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN 91
A + + + V +++ L K P A + ++ EG+LPD TL +++ A
Sbjct: 353 AETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACAC 412
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151
G + + E + + V V V + L+D Y + C + + + +S +N V
Sbjct: 413 IGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKN------V 466
Query: 152 YSRAISCFGKQGQLELMENTL--KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
S G + E L ++M +S T + + +R G+L + +
Sbjct: 467 VSWTSLILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIGALMRGKEIHAH 525
Query: 210 LKRSRHLIDKEGIRAVSFTYLK-ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
R+ D A+ Y++ RK L +F +KD+ WN+LL YA
Sbjct: 526 ALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQ----KKDV--TAWNILLTGYAQQG 579
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE-SVGPDLVTY 327
+ K F +M E HPD TF A S+ M + MK++ ++ P+L Y
Sbjct: 580 QAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHY 639
Query: 328 GCVVD 332
CVVD
Sbjct: 640 ACVVD 644
>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 623
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/301 (18%), Positives = 119/301 (39%), Gaps = 4/301 (1%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
RKI+ + C L+ L + + Q+ + G+ P++ T L + +
Sbjct: 203 RKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQD 262
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV- 151
G V + E + F + + L+ Y R G ++ + + RN +LP++
Sbjct: 263 GDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRN--VLPDLV 320
Query: 152 -YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y+ ++ K+G++ M+ RG + D + N I Y + G + E + +
Sbjct: 321 SYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEM 380
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
S DK + + Y KE + + ++ + +++ L++S +
Sbjct: 381 IGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRP 440
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ + R+S+ G+ P + +N + + D L M H ++ P +TY +
Sbjct: 441 FAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKAL 500
Query: 331 V 331
+
Sbjct: 501 I 501
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 106/294 (36%), Gaps = 37/294 (12%)
Query: 36 IRYRKQ--EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
I YR+ V +L+ L ++ K AHQL + + GL PD + L+ Y G
Sbjct: 309 IMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEG 368
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR----IGCFNEII--------------- 134
+ E++ + E++ S L++ Y + + N ++
Sbjct: 369 KMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYD 428
Query: 135 ----------------SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
S++ ++S R E+Y++ I K + EM R
Sbjct: 429 YLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHR 488
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
+ T A I R E E+ + +S L D + RA+ Y KER
Sbjct: 489 NIKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKA 548
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
L+ + + +N L+ +Y + L RM + GF P++ TF
Sbjct: 549 ETLLQTFAKEFQIFDSESYNTLVKTYCEDADATRLMELQDRMLKVGFAPNIQTF 602
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 92/248 (37%), Gaps = 39/248 (15%)
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
Y G + E + +++ V SV + L++ ++ ++ + +++ +
Sbjct: 189 YVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMA--RVGIH 246
Query: 149 PEVYSRAI--SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P Y+ I F + G ++ + + L+ M GF D T N I Y R G L +
Sbjct: 247 PNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYL 306
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
Y + R L D VS+T L GL ++
Sbjct: 307 YRIMYRRNVLPD-----LVSYTALMN-------------GLCKEG--------------- 333
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
K++ + F RM G +PD+ +FN + + + L M + PD VT
Sbjct: 334 --KVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVT 391
Query: 327 YGCVVDAY 334
+++ Y
Sbjct: 392 CQVLIEGY 399
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
+ M+ G HP+ TFNI F + ++ LE M+ E PD+VTY ++ Y
Sbjct: 237 YKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCR 296
Query: 337 K 337
K
Sbjct: 297 K 297
>gi|356536609|ref|XP_003536829.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Glycine max]
Length = 787
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/356 (21%), Positives = 136/356 (38%), Gaps = 57/356 (16%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR +K L L + ++G+ P NST L+ Y+ G EA + + S
Sbjct: 136 LGRARKWDLVESLWTEMNAKGVAPVNSTYGTLIDAYSKGGLKEEALAWLQRMQSQGMEPD 195
Query: 114 VQVLSDLMDAYGRIGCFNEI--------------ISIIDQV-SCRNADLLPEVYSRAISC 158
+ ++ Y R G F + + + D+V S N L Y+ I
Sbjct: 196 EVTMGIVVLLYKRAGEFQKAQEFFRRWMRGAPFRLGVDDKVVSHTNVCLSSHTYATLIDT 255
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
+GK GQ T ++ +G ++++ T N I Y G RL+++ L
Sbjct: 256 YGKGGQFHAACETFARIIRQGRALNTVTLNTMIHLYGNCG----------RLRQACLLFQ 305
Query: 219 KEG-IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277
K G R V T+ +N+L+ N K+K + F
Sbjct: 306 KMGEFRCVPDTWT--------------------------YNILISLNIKNNKVKLAAKYF 339
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
RM +A PD+ ++ A+S M + + M + D T + Y++
Sbjct: 340 ARMKKAFLEPDVVSYRTLLYAYSTRKMVREAEELIREMDERDLEIDEFTQSALTRMYVES 399
Query: 338 RLGRNLDFGLSKMNLDDSPVVSTDPYV--FEAFGKGDFHSSSE-AFLEFKRQRKWT 390
+ + +L + +S+D Y +A+G+ + ++E F+ K ++K T
Sbjct: 400 GMLEQSWLWFRRFHLAGN--ISSDCYSANIDAYGEWGYTLAAEKVFICCKEKKKLT 453
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 116/259 (44%), Gaps = 19/259 (7%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ L KPHLA + ++ GL+ D C ++ + G A+ +++E+L
Sbjct: 493 SSLIHILASADKPHLAKSYLKKMQEAGLVSDCVPYCVVISSFTKLGQFEMAEELYKEMLG 552
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL--PEVYSRAISCFGKQGQL 165
+ V + ++A+ G E I+ ++++ R A L P +Y+ I + K G L
Sbjct: 553 YAVQPDVIIYGVFINAFADAGSVKEAINYVNEM--RKAGLPGNPAIYNSLIKLYTKVGYL 610
Query: 166 ELMENTLK--EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+ + T K ++ G S+ S+ N I Y+ + + + + L ++ + E
Sbjct: 611 KEAQETYKLIQLSDEGPSLFSS--NCMIDLYTERLMVEQAKEIFESLMKNE--VANEFSY 666
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL----WNLLLLSYAGNFKMKSLQREFMR 279
A+ K K L E ++ + + LG L +N +L Y+ + +++ F
Sbjct: 667 AMMLCMYK--KIGRLDEAIQ-IATQMRRLGFLTDILSYNNVLGLYSMDRRLREATETFKE 723
Query: 280 MSEAGFHPDLTTFNIRAVA 298
M ++G PD F RA+A
Sbjct: 724 MIKSGVQPD--DFTFRALA 740
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 21/158 (13%)
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
GR DL + +N++L + K ++ + M+ G P +T+ A+S+ + +
Sbjct: 120 GRYDLNVIHYNIMLCTLGRARKWDLVESLWTEMNAKGVAPVNSTYGTLIDAYSKGGLKEE 179
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG----------RNLDFGLSKMNLDDSPV 357
L+ M+ + + PD VT G VV Y KR G R + ++ +DD V
Sbjct: 180 ALAWLQRMQSQGMEPDEVTMGIVVLLY--KRAGEFQKAQEFFRRWMRGAPFRLGVDDKVV 237
Query: 358 VSTD--------PYVFEAFGK-GDFHSSSEAFLEFKRQ 386
T+ + + +GK G FH++ E F RQ
Sbjct: 238 SHTNVCLSSHTYATLIDTYGKGGQFHAACETFARIIRQ 275
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 128/292 (43%), Gaps = 14/292 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SLV+ L R+ A Q++N + +G PD T ++ G + +A VV + +
Sbjct: 294 SLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVK 353
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++ V + ++D Y + + + +++++ Y+ ++ K G+ + +
Sbjct: 354 GYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEV 413
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI--RAVS 226
T +EM+ +G ++ T N I F + ++E A G + R + ++G+ +S
Sbjct: 414 NETFEEMILKGCRPNAITYNILI---ENFCKINQLEEASGVIVR----MSQDGLVPDTIS 466
Query: 227 FTYLKE---RKFFMLGEFLRDVGLGRKDLGNL--LWNLLLLSYAGNFKMKSLQREFMRMS 281
F L R + G +L L K +N+L+ +Y+ M+ ++ F M
Sbjct: 467 FNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMI 526
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
G+ PDL T+ + + + ++ L M + P + T+G V+++
Sbjct: 527 SKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNS 578
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 59/326 (18%), Positives = 121/326 (37%), Gaps = 39/326 (11%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L + K A Q + + ++G +PD+ T ++ Y + EA + ++ +
Sbjct: 189 TLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFK 248
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
FV L++ G + + ++ + DL P+ VY+ + +QG +
Sbjct: 249 GFVPDRVTYCSLINGLCAEGDVERALELFNEAQAK--DLKPDLVVYNSLVKGLCRQGLIL 306
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG------------------ 208
+ EMV G D T N I + G++++
Sbjct: 307 HALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMI 366
Query: 209 -------RLKRSRHLIDKE---GIRAVSFTY-------LKERKFFMLGEFLRDVGLGRKD 251
+L + L+++ GI + TY K K + E ++ L
Sbjct: 367 DGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCR 426
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ +N+L+ ++ +++ +RMS+ G PD +FN F R +L
Sbjct: 427 PNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLL 486
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDK 337
+ + + T+ ++ AY K
Sbjct: 487 FQKLDEKGYSATADTFNILIGAYSSK 512
>gi|357457245|ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487951|gb|AES69154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 767
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 4/206 (1%)
Query: 21 SHQTHPKNGDLARKIIRYRKQEGFVDCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLP 77
SH K ++A +I + K++ +V +E L K A L + +K L P
Sbjct: 477 SHLVEKKGPEMALEIFTHLKEKSYVSVEIYNIFMESLHLSGKVEKALSLFDEIKGSDLEP 536
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
D+ST +LC ++G + EA +++ S + SV + L IG +E + ++
Sbjct: 537 DSSTYNIAILCLVDHGQIKEACECHNKIIEMSSIPSVAAYNCLAKGLCNIGEIDEAMLLV 596
Query: 138 -DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
D + + + Y I K E + + L EM+ G S+D+ +A I +
Sbjct: 597 RDCLGNVTSGPMEFKYCLTIIRMCKSNVAEKLIDVLNEMMQEGCSLDNVVCSAIISGMCK 656
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGI 222
+G++ E + L+ + L + + I
Sbjct: 657 YGTIEEARKVFSILRERKLLTESDTI 682
>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 426
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/353 (19%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYXKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA ++ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+T F FS+ + ++ + M+ PD V++AY
Sbjct: 348 DAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAY 400
>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 989
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 72/356 (20%), Positives = 141/356 (39%), Gaps = 32/356 (8%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
V C ++++ L + K A ++ T+ L P+ T AL+ Y G + A++V +
Sbjct: 426 IVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQ 485
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
++ +V S +++ Y + G ++ + ++ ++ RN VY+ I + K G
Sbjct: 486 KMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAG 545
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+ ++ ++ KEM SR + + + R G + E + + ID + +
Sbjct: 546 EQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLI--IDMYSKGIDPDIVN 603
Query: 224 AVSFT--YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM--R 279
S Y KE ++++ + +N L+ G ++ ++ R
Sbjct: 604 YASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALI---KGLLRLGKYDPRYVCSR 660
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
M E G PD T+N + D L MK + P+ VTY ++
Sbjct: 661 MIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIG------- 713
Query: 340 GRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGD-------FHSSSEAF-LEFKRQR 387
GL K +P+ T ++ +A+ + + H A LE KRQ+
Sbjct: 714 ------GLCKTGFVPTPI--THKFLVKAYSRSEKADKILQIHEKLVASGLELKRQK 761
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/313 (19%), Positives = 136/313 (43%), Gaps = 6/313 (1%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L +K+I V C+S++ R K A L + GL P++ + ++
Sbjct: 343 LYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLF 402
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
+G V+EA + +++ + + +MD ++G E + + + N
Sbjct: 403 KSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCV 462
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
YS + + K G++EL E L++M + T ++ I Y++ G L++ R
Sbjct: 463 TYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVL-RE 521
Query: 211 KRSRHLIDKEGIRAVSFT-YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
R+++ + A+ Y K + + +F +++ R + N+++++LL + +
Sbjct: 522 MVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGR 581
Query: 270 MKSLQREFMRMSEAGFHPDLTTF-NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
M + + M G PD+ + ++ F + L + ++ MK +++ D+V Y
Sbjct: 582 MDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSI-VQEMKEKNIRFDVVAYN 640
Query: 329 CVVDAYLDKRLGR 341
++ L RLG+
Sbjct: 641 ALIKGLL--RLGK 651
>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 711
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 124/301 (41%), Gaps = 13/301 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S ++ L + + A ++ ++ ++G P+ T L+ YA G + + +
Sbjct: 226 SFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGD 285
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V + V + L+DAY + G +E + I+ ++ + L P+V YS IS + G+L
Sbjct: 286 GIVANCLVFTILIDAYAKRGMMDEAMLILSEM--QGQGLSPDVFTYSTLISALCRMGRLA 343
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM-ETAYGRLKRSRHLIDKEGIRAV 225
+ +M+ G ++ ++ I + G L + E Y + + ++
Sbjct: 344 DAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSI 403
Query: 226 SFTYLKERKFF---MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ KE + + + ++D+G R D+ +++N L+ Y +M M
Sbjct: 404 VHSICKEGRVMDAHHIFDLVKDIG-ERSDI--IMFNTLIDGYCLVGEMGKAFSVLDAMIS 460
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
AG PD T+N + + D M + + P VTY ++D R GR
Sbjct: 461 AGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLF--RAGRT 518
Query: 343 L 343
+
Sbjct: 519 V 519
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 16/195 (8%)
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+V Y+ I F K+G++ N EM+ +GF D T N+ I + ++ E
Sbjct: 114 PDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELL 173
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKE-RKFFMLGEFLRDVGLGRKDLGNLL------WNL 259
R ++D G+ TY + LG + + R+ G L WN
Sbjct: 174 L------RQMVD-NGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNS 226
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
+ S + + K F M+ G P++ T+ I ++ F D+ MK +
Sbjct: 227 FMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDG 286
Query: 320 VGPDLVTYGCVVDAY 334
+ + + + ++DAY
Sbjct: 287 IVANCLVFTILIDAY 301
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 57/302 (18%), Positives = 109/302 (36%), Gaps = 39/302 (12%)
Query: 71 KSEGLL-PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
K EG+ PD T ++ + G + +A ++ E++ FV V + +++A +
Sbjct: 107 KEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARA 166
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
+ ++ Q+ Y+ I + G+ E +EM RG D + N+
Sbjct: 167 VDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNS 226
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
F+ + G E + + H R
Sbjct: 227 FMDSLCKHGRSKEAAEIFYSMAAKGH---------------------------------R 253
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
++ + + +LL YA + F M G + F I A+++ M +
Sbjct: 254 PNI--VTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAM 311
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFG 369
L L M+ + + PD+ TY ++ A R+GR D + K N V + V+ +
Sbjct: 312 LILSEMQGQGLSPDVFTYSTLISALC--RMGRLAD-AVDKFNQMIGTGVQPNTVVYHSLI 368
Query: 370 KG 371
+G
Sbjct: 369 QG 370
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/364 (19%), Positives = 140/364 (38%), Gaps = 25/364 (6%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C L+ L + L + N + G+ P T ++ G + ++ ++ ++
Sbjct: 198 CNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMR 257
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
V + L+D YG++G E+ S+ +++ ++ +P++ Y+ I+C+ K +
Sbjct: 258 EMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM--KDVGCVPDIITYNGLINCYCKFEK 315
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ EM + G + T + I + + G M+ A L R + G+
Sbjct: 316 MPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGM---MQGAIKLLXDMR----RTGLLP 368
Query: 225 VSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277
FTY K + L D+ L + + LL +M + F
Sbjct: 369 NEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVF 428
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
M + G P+ + + + D L+ M ++ PDL+ YG ++ + +
Sbjct: 429 RSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQ 488
Query: 338 RLGRNLDFGLSKM---NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKL 394
R L +M + +PV+ST + +A+ K SS+A F+ +
Sbjct: 489 RKLEETKLILEEMKSRGISANPVISTT--IIDAYFKAG--KSSDALNFFQEMQDVGVEAT 544
Query: 395 IAVY 398
I Y
Sbjct: 545 IVTY 548
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 115/316 (36%), Gaps = 45/316 (14%)
Query: 27 KNGDL--ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K GDL +R++ ++ G V SL++ G+ L N +K G +PD
Sbjct: 242 KEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDII 301
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T L+ CY + A + E+ ++ +V S L+DA+ + G I ++ +
Sbjct: 302 TYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDM 361
Query: 141 SCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
R LLP Y+ I K G L L +M+ G ++ T A + + G
Sbjct: 362 --RRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAG 419
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
+ E E + R ++ K+GI Y
Sbjct: 420 RMIEAEEVF------RSML-KDGISPNQQVY----------------------------T 444
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
L+ Y +M+ + +M+E PDL + + L LE MK
Sbjct: 445 ALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSR 504
Query: 319 SVGPDLVTYGCVVDAY 334
+ + V ++DAY
Sbjct: 505 GISANPVISTTIIDAY 520
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 11/182 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ L +++K A+ + T+ +G + + AL+ Y+ NG + EA ++E + +
Sbjct: 331 VIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEG 390
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
F S L++ + G ++ + + D CRN + Y+ I GK G++E
Sbjct: 391 FEPDAVTYSVLVNGLCKSGRLDDGMELFD--FCRNKGVAINAMFYASLIDGLGKAGRIED 448
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
EN +EM +G + DS NA I ++ G + + +GR+ ++EG +
Sbjct: 449 AENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRM-------EEEGCDQTVY 501
Query: 228 TY 229
T+
Sbjct: 502 TF 503
>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rotundifolia]
Length = 440
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/353 (19%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 59 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 118
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 119 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 178
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 179 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 238
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 239 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQIL 298
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 299 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 354
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG ++ F S+ + ++ + M+ PD V++AY
Sbjct: 355 DAGEVKNIAVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAY 407
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 74 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 133
Query: 337 KR 338
+
Sbjct: 134 NK 135
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 161/373 (43%), Gaps = 30/373 (8%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L +K+ + + + G V ++++ L K + A L + ++G+ P+ T +L+ C
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 302
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
N G +A + +++ +V S L+DA+ + G E + D++ R+ D P+
Sbjct: 303 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PD 360
Query: 151 V--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
+ YS I+ F +L+ ++ + M+S+ + T N I + + + E +
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE-------FLRDVGLG-RKDLGNLLWNLL 260
+ + R L+ V++T L FF E F + V G D+ + +++L
Sbjct: 421 EMSQ-RGLVGN----TVTYTTLIH-GFFQARECDNAQIVFKQMVSDGVLPDI--MTYSIL 472
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF---WDLHLSLEHMKH 317
L N K+++ F + + PD+ T+NI + WDL SL
Sbjct: 473 LDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS---L 529
Query: 318 ESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY---VFEAFGKGDFH 374
+ V P++VTY ++ + K L D +M ++ P+ + Y + GD
Sbjct: 530 KGVKPNVVTYTTMMSGFCRKGLKEEADALFREMK-EEGPLPDSGTYNTLIRAHLRDGDKA 588
Query: 375 SSSEAFLEFKRQR 387
+S+E E + R
Sbjct: 589 ASAELIREMRSCR 601
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 106/274 (38%), Gaps = 35/274 (12%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A ++ +++ S S+ S L+ A ++ F+ +IS+ +Q+ YS I
Sbjct: 64 DAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILI 123
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSAT----------GNAFIIYYSRFGSLTEMETA 206
+CF ++ QL L L +M+ G+ D T GN S G + EM
Sbjct: 124 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQ 183
Query: 207 ---------------YGRLKRSRHLIDK---EGIRAVSFTY-------LKERKFFMLGEF 241
+ R + L+D+ +G + TY K +
Sbjct: 184 PDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSL 243
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
L+ + G+ + G +++N ++ + + F M G P++ T+N
Sbjct: 244 LKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 303
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ D L M + P++VT+ ++DA++
Sbjct: 304 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 337
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 119/295 (40%), Gaps = 20/295 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L R + A LV+ + +G PD T ++ G + A + +++
Sbjct: 191 TLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQG 250
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V + + ++DA N+ +++ ++ N + P V Y+ I C G+
Sbjct: 251 KIEPGVVIYNTIIDALCNYKNVNDALNLFTEMD--NKGIRPNVVTYNSLIRCLCNYGRWS 308
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL-KRSRHLIDKEGIRAV 225
L +M+ R + + T +A I + + G L E E Y + KRS ID +
Sbjct: 309 DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS---IDPD----- 360
Query: 226 SFTYLKERKFFMLGEFLRDVG------LGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFM 278
FTY F + + L + + + N++ +N L+ + ++ F
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
MS+ G + T+ F + + + + M + V PD++TY ++D
Sbjct: 421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDG 475
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 4/204 (1%)
Query: 27 KNGDLARKIIRYRKQEGFV----DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
K D ++ R Q G V +L+ + ++ A + + S+G+LPD T
Sbjct: 410 KRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTY 469
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
L+ NNG V A VV+E L S + + +++ + G + + +S
Sbjct: 470 SILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 529
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ Y+ +S F ++G E + +EM G DS T N I + R G
Sbjct: 530 KGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAA 589
Query: 203 METAYGRLKRSRHLIDKEGIRAVS 226
++ R + D I V+
Sbjct: 590 SAELIREMRSCRFVGDASTIGLVT 613
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 84/364 (23%), Positives = 149/364 (40%), Gaps = 40/364 (10%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
A Q+V + +G +PD ST ++ LC A V +A ++++E+ V + L
Sbjct: 436 AFQIVKEMMRKGFVPDASTYTKVITFLCQAKR--VDKAFLLFQEMKKVGVNPDVYTYTIL 493
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSR 178
+D++ + G + S D++ R+A P V Y+ + + K QL + MV
Sbjct: 494 IDSFCKAGLIEQAQSWFDEM--RSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGD 551
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI---------DKEGIRAVSFTY 229
++ T +A I + G + + Y +L + I D + I TY
Sbjct: 552 ACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTY 611
Query: 230 -------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
K +K + L + + ++++ L+ + ++ S Q F+RM++
Sbjct: 612 GALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTK 671
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLS---LEHMKHESVGPDLVTYGCVVDAYL---D 336
G+ P + T+ RM L L+ L M +S P++VTY +VD +
Sbjct: 672 CGYLPSVHTYT---SLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGE 728
Query: 337 KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKRQ----RKWTY 391
NL + K SP V T + + GK G + E F++ K + TY
Sbjct: 729 TEKALNLLSLMEKKGC--SPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTY 786
Query: 392 RKLI 395
R LI
Sbjct: 787 RILI 790
>gi|410110147|gb|AFV61153.1| pentatricopeptide repeat-containing protein 123, partial [Phyla
nodiflora]
Length = 419
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/321 (19%), Positives = 123/321 (38%), Gaps = 39/321 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ G+ K A L+ +K+ G++P ++ L+ Y N LEA V+ E+
Sbjct: 69 AMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTLLTMYVENXKFLEALSVFSEMREX 128
Query: 109 SFVLSVQVLSDLMDAYGRIG-----------------------------------CFNEI 133
+ + + ++D YG++G F E
Sbjct: 129 KCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEA 188
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I + + +N + Y+ I +GK + E N ++EM SRG +S T + I
Sbjct: 189 IHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISI 248
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
+ + G L + +L+ S ID+ + + Y + L + L R D
Sbjct: 249 WGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHE--LKRPD-- 304
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
N+ + + AG +++ F + ++G D+T F S+ + ++ +
Sbjct: 305 NIPRDTAIHILAGAGRIEEATYVFRQAIDSGEVKDITVFERMIHLLSKYKKYMNVVEVFD 364
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
M+ PD V++AY
Sbjct: 365 KMRGLGYFPDSNVIAVVLNAY 385
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 72/170 (42%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 137 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 196
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + ++ YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 197 RKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLD 256
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
+++ S G +D I+ Y R G + + LKR ++
Sbjct: 257 RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNI 306
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 118/281 (41%), Gaps = 47/281 (16%)
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAIS 157
+++++ + ++V + + L+ + R G + +S++D++ ++ L P+V Y+ I
Sbjct: 221 TLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEM--KSNSLEPDVVLYNVCID 278
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
CFGK G++++ EM + G +D T + I + L E + + +++ +
Sbjct: 279 CFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVP 338
Query: 218 DKEGIRAVSFTYLKERKF---FMLGEFLRDVG--------------LGRKD--------- 251
+ Y KF + L E R G LGRK
Sbjct: 339 CAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKF 398
Query: 252 -------LGNL-LWNLL--LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ NL +N++ +L AG + + R+ M+ +AG P++ T NI +
Sbjct: 399 EEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMK--DAGLFPNVITVNIMVDRLCK 456
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
D E + H++ PD VTY +++ LGR+
Sbjct: 457 AQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG-----LGRH 492
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 55/294 (18%), Positives = 124/294 (42%), Gaps = 20/294 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V+ L + ++ A + + + PD T C+L+ +G V EA ++E++L ++
Sbjct: 450 MVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDAN 509
Query: 110 FVLSVQVLSDLMDAYGRIG-------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162
+ + V + L+ + + G +NE++ ++ C LL Y + C K
Sbjct: 510 QIPNAVVYTSLIRNFFKCGRKEDGHKIYNEML----RLGCSPDLLLLNTY---MDCVFKA 562
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G++E +E+ + GF D+ + I + G E + +K ++D
Sbjct: 563 GEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAY 622
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
V + K K + L ++ + + + ++ A K+ L +M E
Sbjct: 623 NTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLA---KIDRLDEAYMLFEE 679
Query: 283 A---GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
A G ++ ++ F ++ + +L +E + + + P++ T+ C++DA
Sbjct: 680 AKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDA 733
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 39/214 (18%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++++ + K + A+QL+ +K++G P T +++ A + EA +++EE S
Sbjct: 624 TVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 683
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY---------------S 153
L+V + S L+D +G++G +E I++++ L P VY S
Sbjct: 684 GIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL--MQKGLTPNVYTWNCLLDALVKAEEIS 741
Query: 154 RAISCFGKQGQLELMENTL----------------------KEMVSRGFSVDSATGNAFI 191
A+ CF L+ N + +EM +GF + T I
Sbjct: 742 EALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMI 801
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
++ G++ E +T + + K + D A+
Sbjct: 802 SGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAI 835
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 82/184 (44%), Gaps = 4/184 (2%)
Query: 32 ARKIIRYRKQEGFVDCAS----LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
R + + K GF+ A L+ L + H A++L T+K +G + D ++
Sbjct: 568 GRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVID 627
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ +G V +A + EE+ + +V ++D +I +E + ++ + +L
Sbjct: 628 GFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIEL 687
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
+YS I FGK G+++ ++E++ +G + + T N + + ++E +
Sbjct: 688 NVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCF 747
Query: 208 GRLK 211
+K
Sbjct: 748 QSMK 751
>gi|357519615|ref|XP_003630096.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524118|gb|AET04572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 635
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VYS+ IS GK+GQ+ L EM + G D++ N+ I
Sbjct: 119 VYSKLISVMGKKGQIRLAMWLFSEMRNTGCRPDTSVYNSLI------------------- 159
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
S HL ++ +A+ LG F + R + +N+LL ++A +
Sbjct: 160 --SAHLHSRDKSKAL---------VKALGYFEKMKTTERCKPNIVTYNILLRAFAQARDV 208
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ F + E+ PD+ TFN + + M ++ L MK V DL+TY +
Sbjct: 209 NQVNYLFKDLDESSVSPDIYTFNGVMDGYGKNGMIREMESVLVRMKSNQVKLDLITYNLL 268
Query: 331 VDAYLDKR 338
+D+Y K+
Sbjct: 269 IDSYGKKQ 276
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T +M Y NG + E + V + S+ L + + L+D+YG+ F+++ +
Sbjct: 225 PDIYTFNGVMDGYGKNGMIREMESVLVRMKSNQVKLDLITYNLLIDSYGKKQQFDKMEQV 284
Query: 137 IDQVS-CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
+S + LP ++ I +GK + EN + M G++ T + I Y
Sbjct: 285 FKSLSRSKEKPTLP-TFNSMILNYGKARLKDKAENVFQNMTDMGYTPSFVTHESLIHMYG 343
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
G ++ + +L S+ I + A+ Y
Sbjct: 344 LCGCVSNAVELFDQLIESKVPIKVSTLNAMLDVY 377
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 55/125 (44%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
+E P+ T L+ +A V + ++++L SS + + +MD YG+ G
Sbjct: 185 TERCKPNIVTYNILLRAFAQARDVNQVNYLFKDLDESSVSPDIYTFNGVMDGYGKNGMIR 244
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
E+ S++ ++ L Y+ I +GK+ Q + ME K + T N+ I
Sbjct: 245 EMESVLVRMKSNQVKLDLITYNLLIDSYGKKQQFDKMEQVFKSLSRSKEKPTLPTFNSMI 304
Query: 192 IYYSR 196
+ Y +
Sbjct: 305 LNYGK 309
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 67/333 (20%), Positives = 135/333 (40%), Gaps = 19/333 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD----NSTLCALMLCYANNGFVLEAQVVWE 103
+ L+ +G+K + LA L + +++ G PD NS + A + + +++A +E
Sbjct: 121 SKLISVMGKKGQIRLAMWLFSEMRNTGCRPDTSVYNSLISAHLHSRDKSKALVKALGYFE 180
Query: 104 ELLSSSFV-LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFG 160
++ ++ ++ + L+ A+ + N++ + + + + P++Y+ + +G
Sbjct: 181 KMKTTERCKPNIVTYNILLRAFAQARDVNQVNYLFKDLD--ESSVSPDIYTFNGVMDGYG 238
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K G + ME+ L M S +D T N I Y + +ME + L RS+
Sbjct: 239 KNGMIREMESVLVRMKSNQVKLDLITYNLLIDSYGKKQQFDKMEQVFKSLSRSKEKPTLP 298
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG---NLLWNLLLLSYAGNFKMKSLQRE- 276
++ Y K R L + +V D+G + + + L+ G S E
Sbjct: 299 TFNSMILNYGKAR----LKDKAENVFQNMTDMGYTPSFVTHESLIHMYGLCGCVSNAVEL 354
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F ++ E+ ++T N + + + K + PD TY + AY
Sbjct: 355 FDQLIESKVPIKVSTLNAMLDVYCINGLQQEADSLFTRAKSIKIFPDATTYKLLYKAYTK 414
Query: 337 KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFG 369
LD L +M+ D V+ + +A G
Sbjct: 415 ANSKELLDKLLKQMDKDS--VIPNKRFFLDALG 445
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 129/305 (42%), Gaps = 30/305 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + + A ++ +++ GL P+ +T L+ YA G ++E + + ++ +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ V S L+ AY + G ++ + + ++ R L P+ Y I K G++E
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKM--RQQGLNPDTVTYGTVIGILCKSGRVE 426
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
++M+ S GN I+Y S SL + + +++ LI + R +
Sbjct: 427 DAMRYFEQMIDERLS----PGN--IVYNSLIHSLC----IFDKWDKAKELILEMLDRGIC 476
Query: 227 F----------TYLKERKFF---MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
++ KE + L + + +G+ + D+ + ++ L+ Y KM
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGV-KPDI--ITYSTLIDGYCLAGKMDEA 533
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ M G PD T+N + ++S D + M+ V PD++TY ++
Sbjct: 534 TKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQG 593
Query: 334 YLDKR 338
R
Sbjct: 594 LFQTR 598
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/205 (17%), Positives = 84/205 (40%), Gaps = 2/205 (0%)
Query: 132 EIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
E + ++ + D P+V Y+ I+ F K+G L+ T EM+ RG + T ++
Sbjct: 180 EALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSS 239
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
I + ++ + + ++ + + ++ Y + FL+ +
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ + +N L+ N + ++ F M++ G P++TT+ ++ ++H
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAY 334
L+ M + P+ + ++ AY
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAY 384
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 15/267 (5%)
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157
A+ + + + V L+ R+G + + +++ R V++ I
Sbjct: 170 AETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILID 229
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
K+G E M +EM RG D+ T NA + R ++++A G + R
Sbjct: 230 AHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRA---RDLKSASGIVVEMR--- 283
Query: 218 DKEGIR--AVSFT-----YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
G+R V++T Y KE + M E +++ L + + L+ + +
Sbjct: 284 -SAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRS 342
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+R M EAG PD TT+ + AF R L+ M+++ P +VTY +
Sbjct: 343 ADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVI 402
Query: 331 VDAYLDKRLGRNLDFGLSKM-NLDDSP 356
++ + +N D L+ M N+ SP
Sbjct: 403 MNGFCKLGQMKNADMLLNAMINIGVSP 429
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 115/284 (40%), Gaps = 24/284 (8%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L + G+ PD T AL+ G + +A+ V+E++ + V + L+D
Sbjct: 170 AETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILID 229
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A+ + G ++ + ++ R Y+ ++ + L+ + EM S G
Sbjct: 230 AHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRP 289
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL------------ 230
D+ T I Y + E E + + + G+ V++T L
Sbjct: 290 DTVTYTTLIDGYCK-----EEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSAD 344
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
ER +LGE + + GL + N + +++ ++ +K+ R M G P +
Sbjct: 345 AER---VLGEMM-EAGL---EPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVV 397
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
T+N+ F ++ + + L M + V PD +TY ++D +
Sbjct: 398 TYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGH 441
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 16/180 (8%)
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G+L +N EM SRG + N I R G L ET + R+ + G+
Sbjct: 130 GELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEA-------GV 182
Query: 223 RAVSFTYLK--------ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
+TY R G F + G G K +++ +L+ ++ +++
Sbjct: 183 TPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKP-NAVVFTILIDAHCKKGDAETML 241
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M E G PD T+N R + M+ + PD VTY ++D Y
Sbjct: 242 ELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGY 301
>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 114/280 (40%), Gaps = 9/280 (3%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + + AH+L+ + S+G PD + L+ G V EA+ L+ S
Sbjct: 187 LLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARE-----LAMS 241
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
F SV V + L++ + F E ++D++ + D P V Y+ I+ G +EL
Sbjct: 242 FTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGID--PNVISYTTIINALSDAGNVEL 299
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
L +M +RG S + T + I + G E + R+ R + + A+
Sbjct: 300 SLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMH 359
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
+R + + ++ L+ YA + + M G HP
Sbjct: 360 GLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHP 419
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
++ + R SMF + +E+M+ E+ P+ VT+
Sbjct: 420 NVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTF 459
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 121/313 (38%), Gaps = 22/313 (7%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
D ++IR V +L+ L K+ A + N ++ G P+ T AL+ Y
Sbjct: 337 DFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGY 396
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
A G + A VW +++ +V + ++D R FN+ +I+ + N
Sbjct: 397 AKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNT 456
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF---IIYYSRFGSLTEMETA 206
++ I G+++ +M + G ++ T N ++ RFG A
Sbjct: 457 VTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGE------A 510
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFF----MLGEFLRDVG----LGRKDLGNLLWN 258
+G +K H GI TY + MLGE L +G G K + N
Sbjct: 511 FGLVKDMEH----RGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKP-DAITVN 565
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
+++ +Y K+ + R+S +HPD+ + + + L M E
Sbjct: 566 IVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSE 625
Query: 319 SVGPDLVTYGCVV 331
+ P++ T+ +V
Sbjct: 626 GISPNVATWNVLV 638
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 15/267 (5%)
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157
A+ + + + V L+ R+G + + +++ R V++ I
Sbjct: 294 AETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILID 353
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
K+G E M +EM RG D+ T NA + R ++++A G + R
Sbjct: 354 AHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRA---RDLKSASGIVVEMR--- 407
Query: 218 DKEGIR--AVSFT-----YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
G+R V++T Y KE + M E +++ L + + L+ + +
Sbjct: 408 -SAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRS 466
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+R M EAG PD TT+ + AF R L+ M+++ P +VTY +
Sbjct: 467 ADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVI 526
Query: 331 VDAYLDKRLGRNLDFGLSKM-NLDDSP 356
++ + +N D L+ M N+ SP
Sbjct: 527 MNGFCKLGQMKNADMLLNAMINIGVSP 553
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 115/284 (40%), Gaps = 24/284 (8%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L + G+ PD T AL+ G + +A+ V+E++ + V + L+D
Sbjct: 294 AETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILID 353
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A+ + G ++ + ++ R Y+ ++ + L+ + EM S G
Sbjct: 354 AHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRP 413
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL------------ 230
D+ T I Y + E E + + + G+ V++T L
Sbjct: 414 DTVTYTTLIDGYCK-----EEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSAD 468
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
ER +LGE + + GL + N + +++ ++ +K+ R M G P +
Sbjct: 469 AER---VLGEMM-EAGL---EPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVV 521
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
T+N+ F ++ + + L M + V PD +TY ++D +
Sbjct: 522 TYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGH 565
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 16/180 (8%)
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G+L +N EM SRG + N I R G L ET + R+ + G+
Sbjct: 254 GELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEA-------GV 306
Query: 223 RAVSFTYLK--------ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
+TY R G F + G G K +++ +L+ ++ +++
Sbjct: 307 TPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKP-NAVVFTILIDAHCKKGDAETML 365
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M E G PD T+N R + M+ + PD VTY ++D Y
Sbjct: 366 ELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGY 425
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 20/276 (7%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+KS + PD+ T AL+ V +A+ + E+ S SV+ + L+DAYG G
Sbjct: 395 MKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ 454
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
+ +++ + + + + F K G++ L +M+ + + ++ N+
Sbjct: 455 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 514
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEF- 241
I Y G + ++K S G+ A TY + + E
Sbjct: 515 IIDAYIESGDTEQAFLLVEKMKNS-------GVSASIVTYNLLLKGLCRSSQIDEAEELI 567
Query: 242 --LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
LR+ GL R D+ + +N ++ + M++ G P L T++ A
Sbjct: 568 YTLRNQGL-RPDV--VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSAL 624
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ D+ + M H++V P YG +VDAY+
Sbjct: 625 ASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYV 660
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 106/258 (41%), Gaps = 5/258 (1%)
Query: 83 CALML-CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141
C+++L +G V +A+ V E L+ + V + + + L++ Y ++ I +Q+
Sbjct: 337 CSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMK 396
Query: 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
R+ Y+ I+ K + E+ + EM G T N I Y G L
Sbjct: 397 SRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLE 456
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
+ T +++ D +V + K K L D+ ++N ++
Sbjct: 457 KCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSII 516
Query: 262 LSY--AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
+Y +G+ + L E +M +G + T+N+ R S + + ++++
Sbjct: 517 DAYIESGDTEQAFLLVE--KMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 574
Query: 320 VGPDLVTYGCVVDAYLDK 337
+ PD+V+Y ++ A +K
Sbjct: 575 LRPDVVSYNTIISACCNK 592
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 102/271 (37%), Gaps = 14/271 (5%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
+G P+ T L+ G + E +V+ +E+ S S S L D R G
Sbjct: 258 DGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRT 317
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
++S+ + + L S ++ K G++ E L+ +V G + N I
Sbjct: 318 MLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLIN 377
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDV 245
Y + L + ++K SRH IR TY K + + ++
Sbjct: 378 GYCQVRDLRGAFCIFEQMK-SRH------IRPDHITYNALINGLCKLEMVTKAEDLVMEM 430
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
D +N L+ +Y +++ M + G D+ +F AF +
Sbjct: 431 EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKI 490
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
+ L+ M ++ V P+ Y ++DAY++
Sbjct: 491 PEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 521
>gi|357129239|ref|XP_003566273.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 550
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 134/317 (42%), Gaps = 25/317 (7%)
Query: 30 DLARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A +++R+ G V ++L+ L R ++ A +++ + EG P+ T +
Sbjct: 152 DAAYEVVRWMTDNGVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEGCHPNAHTYTPI 211
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
M Y G + EA+ + + ++++ S + L++A ++G F E+ ++++ + +
Sbjct: 212 MHAYCTTGMIHEAKKLLDSMIAAGCAPSTATYNVLIEALSKVGAFEEVDVLLEESTSKG- 270
Query: 146 DLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
+P+ YS + + G+++ + M+S G + T N + R SLT
Sbjct: 271 -WIPDTITYSTYMDGLCRSGRVDKSFALVDRMLSNGLHPNEVTLNILLNGVCR--SLTAW 327
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLL 256
A L+ S L G A Y ER++ + + D + +K +
Sbjct: 328 -AAKCLLECSAEL----GWDASVINYNTVMRRLCDERRWLAVVKLFTD--MSKKGIAPNS 380
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
W L ++ ++ K+ L+ M F + T+N S +++L L M
Sbjct: 381 WTLNIVVHS-LCKLGKLRNALCLMGSEEFVANAITYNTLIHHLSLSGKANEVYLLLHDMI 439
Query: 317 HESVGPDLVTYGCVVDA 333
E + P+ TY V+D
Sbjct: 440 EEGIAPNETTYSLVIDC 456
>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
Length = 834
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/326 (19%), Positives = 135/326 (41%), Gaps = 39/326 (11%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ +K + A++L +K +G +P T +L+ + G ++ E+
Sbjct: 248 TLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDR 307
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS--CRNADLLPEVYSRAISCFGKQGQLE 166
++VQ+ ++++DA ++G + + ++S C DL+ Y+ I+ F +G++E
Sbjct: 308 GLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLV--TYNTLINHFCSRGEVE 365
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT-------EMETA--------YGRLK 211
E L++ + RG + + T + Y + G T EM T+ YG L
Sbjct: 366 EAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISYGALI 425
Query: 212 R-------------------SRHLIDKEGIRAVSFTYL-KERKFFMLGEFLRDVGLGRKD 251
+R ++ I V L K+ K M L ++
Sbjct: 426 HGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIA 485
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
++ L+ + + + ++ F + E G P + +N+ FS+ M + L
Sbjct: 486 PDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILC 545
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDK 337
++ M+ PD+ T+ ++D Y+ +
Sbjct: 546 IDKMRRAHHVPDIFTFSTIIDGYVKQ 571
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 125/315 (39%), Gaps = 44/315 (13%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--R 154
E + EE+ + + + + LSD++ AY +G ++ + + V + + LP Y+
Sbjct: 116 EIEFTLEEMKTKETIPTREALSDVLCAYADVGLVDKALEVYHGV-VKLHNSLPSTYACNS 174
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
++ K ++E EM+ R D N Y + + + GR++
Sbjct: 175 LLNLLVKHRRIETAHQLYDEMIDRDNGDDICVDN----YTTSI--MVKGLCLKGRIE--- 225
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSL 273
+GI+ + + G+ + N++ +N L+ Y +++S
Sbjct: 226 -----DGIKLIESRW------------------GKGCVPNIVFYNTLIDGYCKKGEVESA 262
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ F ++ GF P L TF F +M MF + L L MK + ++ Y ++DA
Sbjct: 263 YKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDA 322
Query: 334 YLDKRLGRNLDFGLSKM--NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQR---- 387
L +M N + +V+ + + +G+ +E LE +R
Sbjct: 323 RYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVE-EAEKLLEQTIRRGLAP 381
Query: 388 -KWTYRKLIAVYLKK 401
K TY L+ Y K+
Sbjct: 382 NKLTYTPLVHGYCKQ 396
>gi|357155105|ref|XP_003577009.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g13800-like [Brachypodium distachyon]
Length = 821
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/291 (19%), Positives = 123/291 (42%), Gaps = 12/291 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+ L ++KK A ++ + G+ PD + ++ G + A + +E++
Sbjct: 231 ITRSLFQEKKADKAFKVWVEMIEMGVKPDVHGHSSFIIGLCECGKIDLAYAILQEIIREK 290
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY--SRAISCFGKQGQLEL 167
+ + +MD + E+ +++ L P++Y S I + K G L
Sbjct: 291 VQVEAIAFNVVMDGLCKEMRLEEVEKLLENKV--RQGLTPDIYGYSYLIRSYCKVGNLLK 348
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ + + MVS G + + + +++ G +++ + + + S ID
Sbjct: 349 VLDHYQAMVSHGLEANCHIMSYLLQCFTKLGMASQVTEYFQKFRDSGLHIDGVLYNIAMD 408
Query: 228 TYLK----ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
Y K + +LGE + VGL + + L+ Y +++ ++ F M +A
Sbjct: 409 AYCKLGNMDEAVKLLGEMMT-VGLSPD---RIHYTCLIKGYCLKGDIQNARQAFEEMLKA 464
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD+ T+NI A S+ + ++ + HM+ + P+ +TYG V+D +
Sbjct: 465 NVKPDVVTYNILASGLSKRGLVMEVFDLIGHMEDRGLQPNSLTYGVVIDGF 515
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/291 (17%), Positives = 110/291 (37%), Gaps = 24/291 (8%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ + + GL PD L+ Y G + A+ +EE+L ++ V + L
Sbjct: 419 AVKLLGEMMTVGLSPDRIHYTCLIKGYCLKGDIQNARQAFEEMLKANVKPDVVTYNILAS 478
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ G E+ +I + R Y I F + L E + +G
Sbjct: 479 GLSKRGLVMEVFDLIGHMEDRGLQPNSLTYGVVIDGFCRGDNLSEAEVLFNIVEEKGIDN 538
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
++ + Y G + R+ + L+D+ F+ K ++ +
Sbjct: 539 IEVLYSSMVCGYLHKGWTDNAYVLFLRVAKQGKLVDR-------FSCSK-----LISDLC 586
Query: 243 RD-----------VGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
RD L + D+ +L+ ++ L+ +Y M++ + F M + G D+
Sbjct: 587 RDGNSQGASTVCSTMLEKNDVPDLISYSKLISAYCQTGDMRNARLWFHDMVQRGLPVDVI 646
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
+ + + ++ + + M + PD++ Y ++D +L + L R
Sbjct: 647 VYTVLMNGYCKIGLMQEACELFAQMTSLGIKPDIIAYTVLLDGHLKEDLQR 697
>gi|125583699|gb|EAZ24630.1| hypothetical protein OsJ_08397 [Oryza sativa Japonica Group]
Length = 482
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 31/233 (13%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+YS+ IS G++GQ+ + +M + G D++ N+ I
Sbjct: 110 IYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLI------------------- 150
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
HL ++ +A++ LG F + + R + +N+LL ++A
Sbjct: 151 --GTHLHSRDKSKALAKA---------LGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDT 199
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
K L F + E+ PD+ T+N A+ + M ++ L MK PD++T+ +
Sbjct: 200 KQLDILFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNIL 259
Query: 331 VDAYLDKRLGRNLDFGL-SKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+D+Y K+ ++ S + + P T + +GK +E L+
Sbjct: 260 IDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLD 312
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 80/212 (37%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T +M Y NG + E + V + S+ V + L+D+YGR F+++ +
Sbjct: 216 PDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQV 275
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ ++ I+ +GK E E L +M GF + T I+ Y+
Sbjct: 276 FKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAY 335
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
++ + L S++ + + A+ Y + L V
Sbjct: 336 CDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSAST 395
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
+ LL +Y K +Q+ RM+ G P+
Sbjct: 396 YKLLYKAYTKANDKKLIQKLLKRMNSQGIVPN 427
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 69/148 (46%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+ ++R +++ S++ + G+ + A +++ + G P+ T L++ YA
Sbjct: 277 KSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYC 336
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
V A+ +++EL+SS + + ++ ++DAY G E ++D V + A Y
Sbjct: 337 DCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTY 396
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGF 180
+ K +L++ LK M S+G
Sbjct: 397 KLLYKAYTKANDKKLIQKLLKRMNSQGI 424
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 66/332 (19%), Positives = 135/332 (40%), Gaps = 43/332 (12%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+ L+ +GRK + +A L + +++ G PD S +L+ G L ++
Sbjct: 112 SKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLI------GTHLHSR-------- 157
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
D A + + E + ID+ C+ + + RA + G QL++
Sbjct: 158 -----------DKSKALAKALGYFEKMKTIDR--CQPNIVTYNILLRAFAQAGDTKQLDI 204
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ K++ S D T N + Y + G +TEME+ R+K ++ D +
Sbjct: 205 L---FKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILID 261
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
+Y +++ F + + + + ++ + +N ++ +Y + + +M+E GF P
Sbjct: 262 SYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKP 321
Query: 288 DLTTFNIRAVAF------SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
+ T + + SR +D +S ++ H L + ++DAY L
Sbjct: 322 NYVTQECLIMMYAYCDCVSRARQIFDELVSSQNNVH------LSSVNAMLDAYCMNGLPM 375
Query: 342 NLDFGL-SKMNLDDSPVVSTDPYVFEAFGKGD 372
D L S + P ST +++A+ K +
Sbjct: 376 EADQLLDSVIKKGAVPSASTYKLLYKAYTKAN 407
>gi|449479000|ref|XP_004155477.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 493
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 15/239 (6%)
Query: 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230
L + V G V + I +FG + ++ R+ G AV +
Sbjct: 55 VLDQWVEEGRQVKQSDLQTLIKQLRKFGRFNQALQLCEWVRNERNQCLSTGDIAVELHLI 114
Query: 231 -KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K R ++ +G +D + ++ LL Y N +K + +M E GF
Sbjct: 115 SKARGLEQAEKYFSSIGESSRD--HKVYGALLHCYVENKNLKKAEAIMQKMREVGFMKTP 172
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
++N ++ + L L+ M+ +GPD TY ++AY N++ LSK
Sbjct: 173 LSYNAMLNLYAHLGKHEKLAELLKEMEEMGIGPDRFTYNIRMNAYAAASDITNMEKLLSK 232
Query: 350 MNLDDSPVVSTDPYVFEAFGKGDFHS--SSEAFLEFKR-------QRKW-TYRKLIAVY 398
M D P+V+TD + + G G F + S + L K+ ++KW Y+ L+ +Y
Sbjct: 233 MEAD--PLVATDWHTYFVVGNGYFKAGLSENSILMLKKAEQFIGDKQKWLAYQYLMTLY 289
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 118/289 (40%), Gaps = 39/289 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L ++++ A L+N ++ G+ PD T L+ Y G + +A +++ +L+
Sbjct: 371 TLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ 430
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ + L+D R G ++ + D + R ++ P YS I ++GQ+E
Sbjct: 431 RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSR--EIFPNHVTYSILIDSHCEKGQVE 488
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L EM+++G + T N+ I Y R G++++ +
Sbjct: 489 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQ---------------------- 526
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+FL+ + + + + +N L+ Y KM + M +
Sbjct: 527 -------------KFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 573
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
PD+ T+N+ FS + E M + + PD TY +++ ++
Sbjct: 574 PDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHV 622
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 135/352 (38%), Gaps = 74/352 (21%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
R A LV+++ S+GL P T +++ +G +A V++E+ V+
Sbjct: 203 RAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVR 262
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLK 173
+ L+ + R+G E + I ++ R+ + P++ +S I F ++G+++ L+
Sbjct: 263 SFTILIGGFCRVGEIEEALKIYKEM--RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLR 320
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEM-------------------ETAYGRLKRSR 214
EM G D I + R G +++ T L + R
Sbjct: 321 EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 380
Query: 215 HLIDKEGI------RAV-----SFTYL-----------KERKFF--MLGEFLR-DV---- 245
L+D EG+ R V +FT L K + F ML + LR D+
Sbjct: 381 RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYN 440
Query: 246 ----GLGRK---DLGNLLWN---------------LLLLSYAGNFKMKSLQREFMRMSEA 283
G+ R+ D N LW+ +L+ S+ +++ M
Sbjct: 441 TLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINK 500
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
G P++ T+N + R L+ M V PDL+TY ++ Y+
Sbjct: 501 GILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYI 552
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 118/315 (37%), Gaps = 51/315 (16%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ ++ G+ PD + L+ +A G + A E+ V + + ++
Sbjct: 280 ALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIG 339
Query: 123 AYGRIGCFNEIISIIDQ-VSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRG 179
+ R G ++ + + D+ V C LP+V Y+ ++ K+ +L E L EM RG
Sbjct: 340 GFCRAGLMSDALRVRDEMVGC---GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 396
Query: 180 FSVDSATGNAFIIYYS-------------------------RFGSLTEMETAYGRLKRSR 214
D T I Y + +L + G L ++
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 456
Query: 215 HLIDKEGIRA-----VSFTYL---------KERKFFMLGEFLRDVGLGRKDLGNLL-WNL 259
L D R V+++ L E F L E + + L N++ +N
Sbjct: 457 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMI-----NKGILPNIMTYNS 511
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
++ Y + + Q+ +M PDL T+N + + D L M+ E
Sbjct: 512 IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK 571
Query: 320 VGPDLVTYGCVVDAY 334
V PD+VTY +++ +
Sbjct: 572 VQPDVVTYNMLINGF 586
>gi|410110101|gb|AFV61130.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
viburnoides]
Length = 337
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 115/292 (39%), Gaps = 43/292 (14%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V +++ G+ K A L+ +K+ G++P+ ++ L+ Y N
Sbjct: 14 KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYVENKKF 73
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--------------------------- 128
LEA V+ E+ +L + + ++D YG++G
Sbjct: 74 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 133
Query: 129 --------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
F E I + + +N + Y+ + +GK + E N ++EM SRG
Sbjct: 134 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGI 193
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+S T + I + + G L + +L+ S ID+ + + Y +
Sbjct: 194 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKR 253
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
L + L R D N+ + + AG +++ F + +AG D+T F
Sbjct: 254 LLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVF 301
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 129/305 (42%), Gaps = 30/305 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + + A ++ +++ GL P+ +T L+ YA G ++E + + ++ +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ V S L+ AY + G ++ + + ++ R L P+ Y I K G++E
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKM--RQQGLNPDTVTYGTVIGILCKSGRVE 426
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
++M+ S GN I+Y S SL + + +++ LI + R +
Sbjct: 427 DAMRYFEQMIDERLS----PGN--IVYNSLIHSLC----IFDKWDKAKELILEMLDRGIC 476
Query: 227 F----------TYLKERKFF---MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
++ KE + L + + +G+ + D+ + ++ L+ Y KM
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGV-KPDI--ITYSTLIDGYCLAGKMDEA 533
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ M G PD T+N + ++S D + M+ V PD++TY ++
Sbjct: 534 TKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQG 593
Query: 334 YLDKR 338
R
Sbjct: 594 LFQTR 598
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/205 (17%), Positives = 84/205 (40%), Gaps = 2/205 (0%)
Query: 132 EIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
E + ++ + D P+V Y+ I+ F K+G L+ T EM+ RG + T ++
Sbjct: 180 EALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSS 239
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
I + ++ + + ++ + + ++ Y + FL+ +
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ + +N L+ N + ++ F M++ G P++TT+ ++ ++H
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAY 334
L+ M + P+ + ++ AY
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAY 384
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 115/274 (41%), Gaps = 4/274 (1%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +LV ++ GL P+ T +++ G + +A+ V++E++ + L+
Sbjct: 244 AERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVG 303
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
Y + GC +E +S+ +++ + ++P+V ++ I K G LE +++M RG
Sbjct: 304 GYCKAGCSHEALSVFAEMTQKG--IMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGL 361
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
++ T A I + + G L + A +K+ R A+ Y + E
Sbjct: 362 QMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARE 421
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L ++ + ++ ++ +Y N S +M E G PD T++
Sbjct: 422 LLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLC 481
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D H+ ++M + PD TY ++D +
Sbjct: 482 GEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGH 515
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 52/280 (18%), Positives = 108/280 (38%), Gaps = 16/280 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + +++ S+G+ P+ T L+ G EA + ++ + +V + L+
Sbjct: 174 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVA 233
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
A+ R G + ++ + R L P + ++ ++ K G++E EMV G
Sbjct: 234 AFFRAGEVDGAERLVGMM--REGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGL 291
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ D + N + Y + G E + + + + + D V+FT L G
Sbjct: 292 APDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD-----VVTFTSLIH-VMCKAGN 345
Query: 241 FLRDVGLGRK------DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
R V L R+ + + + L+ + + M + P + +N
Sbjct: 346 LERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNA 405
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + + L M+ + + PD+VTY ++ AY
Sbjct: 406 LINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAY 445
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 96/233 (41%), Gaps = 27/233 (11%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y+ I K ++ E ++M+ +G D+ T N I Y G E +
Sbjct: 240 TYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKE-------V 292
Query: 211 KRSRHLIDKEGIRAVSFTY------------LKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
R + G++ +TY +E +FF + + + ++ ++
Sbjct: 293 VRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGI---KPNVA--IYG 347
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
+L+ YA + + M E G PD FNI A+++ +M + MK +
Sbjct: 348 ILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQ 407
Query: 319 SVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
+ PD+V +G ++DA +LGR +D + K N + V+ + +VF + G
Sbjct: 408 GLSPDVVNFGALIDALC--KLGR-VDDAVLKFNQMMNEGVAPNIFVFNSLVYG 457
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 67/355 (18%), Positives = 135/355 (38%), Gaps = 42/355 (11%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+++ + + GL PD T +L+ NNG EA+ ++ ++ +V + L+ Y
Sbjct: 294 RMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGY 353
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
G +E+ +++ + +++ + + K+ ++ + +M +G S D
Sbjct: 354 ATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDV 413
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY--------------- 229
A I + G + + + ++ EG+ F +
Sbjct: 414 VNFGALIDALCKLGRVDDAVLKFNQMM-------NEGVAPNIFVFNSLVYGLCTVDKWEK 466
Query: 230 LKERKFFMLGEFLR-DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
KE F ML + +R DV + +N +L + ++ QR M G PD
Sbjct: 467 AKEFYFEMLNQGIRPDV---------VFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPD 517
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD-FGL 347
+ ++ + + SL+ M + PD TY ++ Y R GR D +G+
Sbjct: 518 VISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYC--RAGRIDDAYGV 575
Query: 348 SKMNLDD--SPVVSTDPYVFEA-FGKGDFHSSSEAFLEF----KRQRKWTYRKLI 395
+ L + +P V T + F F + E +L K+ W Y ++
Sbjct: 576 FREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIIL 630
>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
Length = 987
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 126/312 (40%), Gaps = 34/312 (10%)
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157
A V+ E++++ + S L+ A + NE +SI+DQ++ Y+ IS
Sbjct: 614 AAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIIS 673
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
K+G+ + ++ EM+S G + T FI Y + G + E E G ++R
Sbjct: 674 EMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTP 733
Query: 218 D------------KEGIRAVSFTYLKE-----------RKFFMLGEFLRDVGLGRKDLGN 254
D G +F+ LK + +L FL+ + +
Sbjct: 734 DVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDT 793
Query: 255 L-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+WN + ++ ++ + RM + G +P + T++ F + + + + L+
Sbjct: 794 SGMWNWI--------ELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLD 845
Query: 314 HMKHESVGPDLVTYGCVVDAYLDKRL-GRNLDFGLSKMNLDDSPVVSTDPYVFEAF-GKG 371
HM +++ P+ Y ++ D +L G+++ F + P + + Y+ +G
Sbjct: 846 HMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEG 905
Query: 372 DFHSSSEAFLEF 383
D+ + F +
Sbjct: 906 DYDRAKSLFCDL 917
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 116/291 (39%), Gaps = 2/291 (0%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V+ L + KK A L+ + + G P +T AL+ G + EA + +++ +
Sbjct: 39 TIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN 98
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V + L+D G+ E + +++ R L Y+ I + G++
Sbjct: 99 GCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQA 158
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI-RAVSF 227
+ K M S+G D T + I + G + + ++ +R L E + A+
Sbjct: 159 SSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSME-ARGLAPNEVVYSALIH 217
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
K RK E L + + +N+L+ + + + + F M EAG P
Sbjct: 218 GLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKP 277
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
D+ T+NI F + + M P++VTYG ++ +R
Sbjct: 278 DVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRR 328
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 106/304 (34%), Gaps = 35/304 (11%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL RKI+ V SL++ LG+KK+ A++L + S GL D AL+
Sbjct: 90 DLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGL 149
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
G + +A V++ + S V V LS ++D + G + I + R
Sbjct: 150 LQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNE 209
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
VYS I K +++ L +M + D+ T N I + G + +
Sbjct: 210 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDE 269
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
+ + G + +TY N+L+ +
Sbjct: 270 MLEA-------GCKPDVYTY----------------------------NILISGFCKAGN 294
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ F MS + P++ T+ + L +HMK PD Y
Sbjct: 295 TDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSS 354
Query: 330 VVDA 333
+VD
Sbjct: 355 LVDG 358
>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Brachypodium distachyon]
Length = 675
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 35/258 (13%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P AL+ Y G + A+ V +E+ S L+DAY R G + +
Sbjct: 304 PRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARIL 363
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ ++ V+SR ++ F +G + L+EM + G D N I + +
Sbjct: 364 LKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGK 423
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
+ L A+ R++ +EGI T
Sbjct: 424 YNCLGHAMDAFNRMR-------EEGIEPDVVT---------------------------- 448
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
WN L+ ++ + F M E+ P TT+NI + + L MK
Sbjct: 449 WNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMK 508
Query: 317 HESVGPDLVTYGCVVDAY 334
+ + P+++TY +VD Y
Sbjct: 509 EQGLVPNIITYTTLVDVY 526
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 40 KQEGFVDC----ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K++G V +LV+ GR + A + + +K++GL P + AL+ YA G
Sbjct: 508 KEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLA 567
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YS 153
A V + + + S VL+ LM+A+G E S++ + + DL P+V Y+
Sbjct: 568 DHALNVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFM--KENDLRPDVITYT 625
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVD 183
+ + Q + + +EM++ G + D
Sbjct: 626 TLMKALIRIEQFDKVPVIYEEMITSGCAPD 655
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 118/289 (40%), Gaps = 39/289 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L ++++ A L+N ++ G+ PD T L+ Y G + +A +++ +L+
Sbjct: 56 TLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ 115
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ + L+D R G ++ + D + R ++ P YS I ++GQ+E
Sbjct: 116 RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSR--EIFPNHVTYSILIDSHCEKGQVE 173
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L EM+++G + T N+ I Y R G+++ + + + K + VS
Sbjct: 174 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVS----------KGQKFLQKMMVNKVS 223
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
DL + +N L+ Y KM + M +
Sbjct: 224 -----------------------PDL--ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 258
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
PD+ T+N+ FS + E M + + PD TY +++ ++
Sbjct: 259 PDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHV 307
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 100/263 (38%), Gaps = 39/263 (14%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G LPD T L+ +L+A+ + E+ + + L+ Y G ++
Sbjct: 46 GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 105
Query: 134 ISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ + D + N L P++ Y+ I +QG L+ + +M SR + T + I
Sbjct: 106 LQLFDTM--LNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILI 163
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
+ G ++E A+G L +I+K GI TY
Sbjct: 164 DSHCEKG---QVEDAFGFLDE---MINK-GILPNIMTY---------------------- 194
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
N ++ Y + + Q+ +M PDL T+N + + D
Sbjct: 195 ------NSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 248
Query: 312 LEHMKHESVGPDLVTYGCVVDAY 334
L M+ E V PD+VTY +++ +
Sbjct: 249 LNMMEKEKVQPDVVTYNMLINGF 271
>gi|125541147|gb|EAY87542.1| hypothetical protein OsI_08951 [Oryza sativa Indica Group]
Length = 482
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 31/233 (13%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+YS+ IS G++GQ+ + +M + G D++ N+ I
Sbjct: 110 IYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLI------------------- 150
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
HL ++ +A++ LG F + + R + +N+LL ++A
Sbjct: 151 --GAHLHSRDKSKALAKA---------LGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDT 199
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
K L F + E+ PD+ T+N A+ + M ++ L MK PD++T+ +
Sbjct: 200 KQLDILFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNIL 259
Query: 331 VDAYLDKRLGRNLDFGL-SKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+D+Y K+ ++ S + + P T + +GK +E L+
Sbjct: 260 IDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLD 312
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 80/212 (37%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T +M Y NG + E + V + S+ V + L+D+YGR F+++ +
Sbjct: 216 PDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQV 275
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ ++ I+ +GK E E L +M GF + T I+ Y+
Sbjct: 276 FKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAY 335
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
++ + L S++ + + A+ Y + L V
Sbjct: 336 CDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSAST 395
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
+ LL +Y K +Q+ RM+ G P+
Sbjct: 396 YKLLYKAYTKANDKKLIQKLLKRMNSQGIVPN 427
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 69/148 (46%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+ ++R +++ S++ + G+ + A +++ + G P+ T L++ YA
Sbjct: 277 KSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYC 336
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
V A+ +++EL+SS + + ++ ++DAY G E ++D V + A Y
Sbjct: 337 DCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTY 396
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGF 180
+ K +L++ LK M S+G
Sbjct: 397 KLLYKAYTKANDKKLIQKLLKRMNSQGI 424
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 66/332 (19%), Positives = 135/332 (40%), Gaps = 43/332 (12%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+ L+ +GRK + +A L + +++ G PD S +L+ G L ++
Sbjct: 112 SKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLI------GAHLHSR-------- 157
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
D A + + E + ID+ C+ + + RA + G QL++
Sbjct: 158 -----------DKSKALAKALGYFEKMKTIDR--CQPNIVTYNILLRAFAQAGDTKQLDI 204
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ K++ S D T N + Y + G +TEME+ R+K ++ D +
Sbjct: 205 L---FKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILID 261
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
+Y +++ F + + + + ++ + +N ++ +Y + + +M+E GF P
Sbjct: 262 SYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKP 321
Query: 288 DLTTFNIRAVAF------SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
+ T + + SR +D +S ++ H L + ++DAY L
Sbjct: 322 NYVTQECLIMMYAYCDCVSRARQIFDELVSSQNNVH------LSSVNAMLDAYCMNGLPM 375
Query: 342 NLDFGL-SKMNLDDSPVVSTDPYVFEAFGKGD 372
D L S + P ST +++A+ K +
Sbjct: 376 EADQLLDSVIKKGAVPSASTYKLLYKAYTKAN 407
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 113/298 (37%), Gaps = 26/298 (8%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ + A + + GL PD T LM + V ++EE+ +
Sbjct: 94 SLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQ 153
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ +V S L+DA + G + + + + R Y+ I GK G ++
Sbjct: 154 NCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKA 213
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA--VS 226
+EM S G N+ I R G A K R ++ K G++ V+
Sbjct: 214 FFLFEEMTSEGLVATRVVYNSLIHGLGRSGR------ADAAAKLFREMLSK-GLQPDHVT 266
Query: 227 FTYL-----------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
FT L + R+ F + RDVG L L+N+L+ + + ++
Sbjct: 267 FTSLVYGLGVAGRASEARRIF---QEARDVGCA---LDVNLYNVLIDTLCKSKRLDEAWE 320
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
F + E G PD+ TFN + D + L MK PD+ Y ++D
Sbjct: 321 IFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDG 378
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 4/156 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ LGR + A +L + S+GL PD+ T +L+ G EA+ +++E
Sbjct: 234 SLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDV 293
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLE 166
L V + + L+D + +E I ++ L+P+VY+ + K G++
Sbjct: 294 GCALDVNLYNVLIDTLCKSKRLDEAWEIFGEL--EEDGLVPDVYTFNALMDGLCKSGRIH 351
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
L +M G + D N I + G + E
Sbjct: 352 DAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEE 387
>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Glycine max]
Length = 832
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 115/299 (38%), Gaps = 39/299 (13%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
KQ GF V SL+ GR +KPH A Q+ + +K L P+ + AL+ Y +NG +
Sbjct: 390 KQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLL 449
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
+A + E+ +V + L+ A GR +I +++ R L Y+ A
Sbjct: 450 ADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAA 509
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I G+ + K M + DS T I G K S++
Sbjct: 510 IGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLI---------------SGCCKMSKY 554
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
+ ++++E L L +++ + +Y+ ++ +
Sbjct: 555 --------GEALSFMEEIMHLKL------------PLSKEVYSSAICAYSKQGQIVEAES 594
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F M +G +PD+ T+ A++ + + E M+ S+ D + ++ ++
Sbjct: 595 TFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSF 653
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 99/226 (43%), Gaps = 8/226 (3%)
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENT 171
V+ + +++A+GR G + ++I+D + A + P Y+ I+ G G + N
Sbjct: 186 VETYNAIINAHGRAGQWRWAMNIMDDM--LRAAIPPSRSTYNNLINACGSSGNWKEALNV 243
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL-IDKEGIRAVSFTYL 230
K+M G D T N I+ + G+ +Y L + H+ D + V +
Sbjct: 244 CKKMTENGVGPDLVTHN-IILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLV 302
Query: 231 KERKFFMLGEFLRDVGLGRKDLGN--LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
K R++ E + + + + + ++ Y+ ++++ + F M G P+
Sbjct: 303 KLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPN 362
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ ++N A++ M + HL +K PD+V+Y +++AY
Sbjct: 363 IVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAY 408
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 117/286 (40%), Gaps = 38/286 (13%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
N + +EGL P+ + AL+ YA G EA + + E+ + F + + L++AYGR
Sbjct: 352 NMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRS 411
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
++ I D++ RN L P + Y+ I +G G L L+EM G +
Sbjct: 412 QKPHKARQIFDRMK-RN-KLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVV 469
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHL------IDKEGIRAVSFTYLKERKFFM-L 238
S+ + A GR R + + GI+ + Y M +
Sbjct: 470 -------------SICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNV 516
Query: 239 GEFLRDVGLGRK------DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT-- 290
GE+ + +GL + ++ + +L+ +G KM S E + E H L
Sbjct: 517 GEYDKAIGLYKSMRKKKIKTDSVTYTVLI---SGCCKM-SKYGEALSFMEEIMHLKLPLS 572
Query: 291 --TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ A+S+ + + MK PD+VTY ++DAY
Sbjct: 573 KEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAY 618
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 6/174 (3%)
Query: 28 NGDLAR--KIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNST 81
NG LA KI+R +QEG V +L+ GR + ++ + G+ +
Sbjct: 446 NGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVA 505
Query: 82 LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141
A + N G +A +++ + + L+ ++ + E +S ++++
Sbjct: 506 YNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIM 565
Query: 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
L EVYS AI + KQGQ+ E+T M S G D T A + Y+
Sbjct: 566 HLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYN 619
>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
Length = 390
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ K+ L + +K+ G+ PD T ++ + G V +A ++EE+ SS
Sbjct: 192 LGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPD 251
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
V + +++ G+ G +E + + + D P+V YS I CFGK ++++ +
Sbjct: 252 VITYNSMINCLGKNGDLDEAHMLFKDMQEKGYD--PDVFTYSILIECFGKSNKVDMACSL 309
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM+++G + T N + R G E Y LK+ +G+ S TY
Sbjct: 310 FDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYETLKQ-------QGLAPDSITY 360
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 127/315 (40%), Gaps = 26/315 (8%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K PD T L+ G + EE++S VL++ + +++A G+
Sbjct: 1 MKQNNCDPDAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKM 60
Query: 130 FNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
++ I ++ ++ +D P YS + GQL + L + G ++ +
Sbjct: 61 VDKAIFMLSKMI--ESDCQPNQFTYSIMLDVLATGGQLHRLNEILD--ICSGH-LNRSVY 115
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLGEFLRD 244
+ + + G +E + + R+ S D++ ++ K L + +
Sbjct: 116 SYLVKALCKSGHASEAHSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMMPE 175
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE-FMRMSEAGFHPDLTTFNIRAVAFSRMS 303
G+ D+G ++N++ S G K S + +M G PD+ T+NI +F R+
Sbjct: 176 KGI-TTDVG--MYNIIF-SALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVG 231
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY 363
+ E M S PD++TY +++ LG+N D + M D DP
Sbjct: 232 LVDKASELFEEMDDSSCKPDVITYNSMINC-----LGKNGDLDEAHMLFKDMQEKGYDPD 286
Query: 364 VF------EAFGKGD 372
VF E FGK +
Sbjct: 287 VFTYSILIECFGKSN 301
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 67/177 (37%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+Y+ S GK Q+ M + +M + G + D T N I + R G + + + +
Sbjct: 184 MYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEM 243
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
S D ++ K +D+ D +++L+ + + K+
Sbjct: 244 DDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKV 303
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
F M G P++ T+NI R + H E +K + + PD +TY
Sbjct: 304 DMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTREAHKLYETLKQQGLAPDSITY 360
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 106/272 (38%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + ++PD T ++ + G + EA + EE+ + V + L++
Sbjct: 286 AANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLIN 345
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G E +I+++ R Y+ + F K+G+++ ++ T+++M G
Sbjct: 346 GCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLP 405
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T N I ++ + G + E + R +D + + +ERK + L
Sbjct: 406 DIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLL 465
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ + + L++ Y + K R + M E P + T+N +M
Sbjct: 466 CSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQM 525
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
L+ + + PD +TY ++ Y
Sbjct: 526 GKTNQAIDKLDELLESGLVPDEITYNTIIHGY 557
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/238 (18%), Positives = 101/238 (42%), Gaps = 4/238 (1%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ L R++K AH L+ + + G D + L++ Y + +A +W+E+
Sbjct: 447 TMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEK 506
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ S+ + ++ ++G N+ I +D++ + L+P+ Y+ I + ++GQ+E
Sbjct: 507 EIIPSIITYNSMIAGLCQMGKTNQAIDKLDEL--LESGLVPDEITYNTIIHGYCQEGQVE 564
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+MV + F D T N + + G L + + +D +
Sbjct: 565 KAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTII 624
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+ KE++F + L ++ + +N +L +MK + +++E G
Sbjct: 625 LSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKG 682
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 124/286 (43%), Gaps = 23/286 (8%)
Query: 59 KPHLAHQLVNTVKSEGLLPD----NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
+PH A Q+ N +K G+ P N+ L AL+ +++ L ++ V+ + + ++
Sbjct: 139 RPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRL-SKAVFTDFIKIGVKINT 197
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTL 172
+ L+ F E I ++ ++ R+ P+ Y+ + K+G+L + L
Sbjct: 198 NSFNILIHGSCMENRFGEAIRVLGKM--RDYGCPPDNITYNTILDGLCKKGRLNEARDLL 255
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
+M ++G + T N ++ R G L E + ++ + D + + K+
Sbjct: 256 LDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQ 315
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY----AGNFKMKSLQREFMRMSEA---GF 285
+ + E +R R+++ NL + +++Y G F+ S + F + E G
Sbjct: 316 GR---IAEAMR----LREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGM 368
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
P+ T+N+ F + ++ ++ M+ PD+VTY ++
Sbjct: 369 KPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLI 414
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 239 GEFLRDVGLGRKDLG----NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
GE +R +G R D G N+ +N +L ++ + + M G P+ TTFNI
Sbjct: 214 GEAIRVLGKMR-DYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNI 272
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKMNLD 353
V R+ + +E M SV PD TY ++ + + R+ + NL
Sbjct: 273 LVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLK 332
Query: 354 DSP-VVSTDPYVFEAFGKGDFHSSSEAF 380
SP VV+ + + F G SS E F
Sbjct: 333 LSPDVVTYNTLINGCFEHG---SSEEGF 357
>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 124/307 (40%), Gaps = 7/307 (2%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L +++ Q V +LV L + K A LV + +G PD T A++
Sbjct: 167 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLC 226
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
G A + ++ V + + ++D + ++ + +++ + + P+
Sbjct: 227 KRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG--IKPD 284
Query: 151 V--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
V Y+ ISC G+ L +M+ + + D NA I + + G L E E Y
Sbjct: 285 VFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYD 344
Query: 209 RLKRSRHLI-DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAG 266
+ +S+H D + + K ++ E R++ R +GN + + L+ +
Sbjct: 345 EMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMS-QRGLVGNTVTYTTLIHGFFQ 403
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ Q F +M G HPD+ T+NI + E+M+ + D+VT
Sbjct: 404 ARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVT 463
Query: 327 YGCVVDA 333
Y +++A
Sbjct: 464 YTTMIEA 470
>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 533
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 111/282 (39%), Gaps = 34/282 (12%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C LV+ L +K A+++++ + + GL+P+ T ++ Y G + A+ V EE+L
Sbjct: 192 CNLLVKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEML 251
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + LMD Y ++G F+E +++D + + Y I K+ +
Sbjct: 252 DRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSG 311
Query: 167 LMENTLKEMVSRGF------------------SVDSATG-------NAFIIYYSRFGSLT 201
N EM+ R F VD A G N + + +L
Sbjct: 312 EARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLI 371
Query: 202 EMETAYGRLKRSRHLIDK--EGIRAVSFTY------LKERKFFMLGEFLRDVGLGRKDLG 253
GR+ +R L D+ +G TY + E+ L D RK
Sbjct: 372 HWLCKEGRVSEARKLFDEFDKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKP 431
Query: 254 N-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
N +N+L+ + N +K R M E+G P+ TTF I
Sbjct: 432 NAFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLI 473
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 40/82 (48%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+ +L Y M+S +R M + G++PD T+ + + ++ F + ++ M+
Sbjct: 227 YTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDME 286
Query: 317 HESVGPDLVTYGCVVDAYLDKR 338
+ P+ VTYG ++ A ++
Sbjct: 287 KNEIEPNEVTYGVMIRALCKEK 308
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 129/305 (42%), Gaps = 30/305 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + + A ++ +++ GL P+ +T L+ YA G ++E + + ++ +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ V S L+ AY + G ++ + + ++ R L P+ Y I K G++E
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKM--RQQGLNPDTVTYGTVIGILCKSGRVE 426
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
++M+ S GN I+Y S SL + + +++ LI + R +
Sbjct: 427 DAMRYFEQMIDERLS----PGN--IVYNSLIHSLC----IFDKWDKAKELILEMLDRGIC 476
Query: 227 F----------TYLKERKFF---MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
++ KE + L + + +G+ + D+ + ++ L+ Y KM
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGV-KPDI--ITYSTLIDGYCLAGKMDEA 533
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ M G PD T+N + ++S D + M+ V PD++TY ++
Sbjct: 534 TKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQG 593
Query: 334 YLDKR 338
R
Sbjct: 594 LFQTR 598
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/205 (17%), Positives = 84/205 (40%), Gaps = 2/205 (0%)
Query: 132 EIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
E + ++ + D P+V Y+ I+ F K+G L+ T EM+ RG + T ++
Sbjct: 180 EALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSS 239
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
I + ++ + + ++ + + ++ Y + FL+ +
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ + +N L+ N + ++ F M++ G P++TT+ ++ ++H
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAY 334
L+ M + P+ + ++ AY
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAY 384
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 11/182 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ L +++K A+ + T+ +G + + AL+ Y+ NG + EA ++E + +
Sbjct: 329 VIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEG 388
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
F S L++ + G ++ + + D CRN + Y+ I GK G++E
Sbjct: 389 FEPDAVTYSVLVNGLCKSGRLDDGMELFD--FCRNKGVAINAMFYASLIDGLGKAGRIED 446
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
EN +EM +G + DS NA I ++ G + + +GR+ ++EG +
Sbjct: 447 AENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRM-------EEEGCDQTVY 499
Query: 228 TY 229
T+
Sbjct: 500 TF 501
>gi|356544457|ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 711
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/340 (20%), Positives = 130/340 (38%), Gaps = 55/340 (16%)
Query: 45 VDCASLV---EDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVV 101
V C+ +V LG K A Q + +G+ L AL+ + G + EA ++
Sbjct: 304 VTCSIMVIVMRKLGHSAKD--AWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALII 361
Query: 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
EL + V + LMDAY + E + ++ + ++ + + +
Sbjct: 362 LSELEKKGVSSNAIVYNTLMDAYCKSNRVEEAEGLFIEMKTKGIKHTEATFNILMYAYSR 421
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET-AYGRLKRSRHLIDKE 220
+ Q E++E + EM G ++ + I Y + ++++M A+ ++K K+
Sbjct: 422 KMQPEIVEKLMAEMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMK-------KD 474
Query: 221 GIRAVSFTYLK----------ERKFFMLGEFLRDVGLGRK---------------DLGNL 255
GI+ S +Y K + E ++ G+ D L
Sbjct: 475 GIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTL 534
Query: 256 L-----------------WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+ +N L+ +A + K + + + G HP + T+N+ A
Sbjct: 535 MKIWKLMRRYKVEGTRVTFNTLVDGFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMNA 594
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
++R L LE M ++ PD VTY ++ A+L R
Sbjct: 595 YARGGQHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVR 634
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 4/158 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A+ ++ EG+ P T AL+ + G +W+ + + + L+D
Sbjct: 499 AYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRYKVEGTRVTFNTLVD 558
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ + G + E +I + + N L P V Y+ ++ + + GQ + L+EM +
Sbjct: 559 GFAKHGHYKEARDVISKFA--NVGLHPTVMTYNMLMNAYARGGQHSKLPELLEEMAAHNL 616
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
DS T + I + R ++ + + +S +ID
Sbjct: 617 KPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVID 654
>gi|356508382|ref|XP_003522936.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
chloroplastic-like [Glycine max]
Length = 854
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/327 (17%), Positives = 125/327 (38%), Gaps = 55/327 (16%)
Query: 61 HLAHQLVNTVKSEGLL----------------PDNSTLCALMLCYANNGFVLEAQVVWEE 104
+L H L+ + K GLL P+ C ++ Y+ G +A+V++ +
Sbjct: 474 NLYHLLICSCKEAGLLEDAVKIYSRMPKSDDNPNMHIACTMIDIYSVMGLFKDAEVLYLK 533
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--------------- 149
L SS L + S ++ Y + G + +++D + R D++P
Sbjct: 534 LKSSGVALDMIAFSIVVRMYVKAGALKDACAVLDAIDMR-PDIVPDKFLLCDMLRIYQRC 592
Query: 150 ----------------------EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
E+Y+ ++C + ++ + EMV GF+ + T
Sbjct: 593 NMATKLADLYYKISKSREDWDQELYNCVLNCCAQALPVDELSRLFDEMVQHGFAPSTITF 652
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL 247
N + + + ++ Y K+ + L+D + Y K + F + ++ +
Sbjct: 653 NVMLDVFGKAKLFNKVWRLYCMAKK-QGLVDVITYNTIIAAYGKNKDFNNMSSTVQKMEF 711
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
+ +N +L +Y + +M++ + +M ++ D T+N + +
Sbjct: 712 DGFSVSLEAYNSMLDAYGKDGQMETFRSVLQKMKDSNCASDHYTYNTLINIYGEQGWINE 771
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ L +K + PDL +Y ++ AY
Sbjct: 772 VANVLTELKECGLRPDLCSYNTLIKAY 798
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 34/287 (11%)
Query: 141 SCRNADLLPE---VYSRA----------ISC-----FGKQGQLELMENTLKEMVSRGFSV 182
SC+ A LL + +YSR I+C + G + E ++ S G ++
Sbjct: 482 SCKEAGLLEDAVKIYSRMPKSDDNPNMHIACTMIDIYSVMGLFKDAEVLYLKLKSSGVAL 541
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI-DKEGIRAVSFTYLKERKFFMLGEF 241
D + + Y + G+L + + ++ DK + + Y + L +
Sbjct: 542 DMIAFSIVVRMYVKAGALKDACAVLDAIDMRPDIVPDKFLLCDMLRIYQRCNMATKLADL 601
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ R+D L+N +L A + L R F M + GF P TFN+ F +
Sbjct: 602 YYKISKSREDWDQELYNCVLNCCAQALPVDELSRLFDEMVQHGFAPSTITFNVMLDVFGK 661
Query: 302 MSMF---WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVV 358
+F W L+ M + D++TY ++ AY + N+ + KM D V
Sbjct: 662 AKLFNKVWRLYC----MAKKQGLVDVITYNTIIAAYGKNKDFNNMSSTVQKMEFDGFS-V 716
Query: 359 STDPY--VFEAFGKGDFHSSSEAFLEFKRQRK-----WTYRKLIAVY 398
S + Y + +A+GK + + L+ + +TY LI +Y
Sbjct: 717 SLEAYNSMLDAYGKDGQMETFRSVLQKMKDSNCASDHYTYNTLINIY 763
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 8/180 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ G+ K + +L K +GL+ D T ++ Y N +++
Sbjct: 655 MLDVFGKAKLFNKVWRLYCMAKKQGLV-DVITYNTIIAAYGKNKDFNNMSSTVQKMEFDG 713
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
F +S++ + ++DAYG+ G S++ ++ N Y+ I+ +G+QG + +
Sbjct: 714 FSVSLEAYNSMLDAYGKDGQMETFRSVLQKMKDSNCASDHYTYNTLINIYGEQGWINEVA 773
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
N L E+ G D + N I Y G + E A G +K R K GI +Y
Sbjct: 774 NVLTELKECGLRPDLCSYNTLIKAYGIAGMVAE---AVGLIKEMR----KNGIEPDKKSY 826
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 8/178 (4%)
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
KQ ++L + M+ G + AT + Y + +L E E A+ R++ R I E
Sbjct: 171 KQSLVQLGTKWFRMMLDCGVVPNVATIGMLMGLYRKGWNLEEAEFAFSRMRGFR--IVCE 228
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKD--LGNLL-WNLLLLSYAGNFKMKSLQREF 277
+ T + + E + + L RKD + NL W ++L +Y+ K+ +R
Sbjct: 229 SAYSSMITIYTRLRLYEKAEGV--IELMRKDEVVPNLENWLVMLNAYSQQGKLGDAERVL 286
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRM-SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M EAGF ++ FN F + M L + + V PD TY +++ +
Sbjct: 287 EAMQEAGFSDNIVAFNTMITGFGKARRMDAAQRLFMRITRCLEVDPDETTYRSMIEGW 344
>gi|255661216|gb|ACU25777.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 426
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/321 (19%), Positives = 125/321 (38%), Gaps = 39/321 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ G+ K A L++ ++ G++PD + ++ Y N LEA V+ E+
Sbjct: 84 SMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYVENHKFLEALSVFREMREI 143
Query: 109 SFVLSVQVLSDLMDAYGRIG-----------------------------------CFNEI 133
+ +L + + ++D YG++ F E
Sbjct: 144 NCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEA 203
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I + + +N + Y+ + +GK + E N ++EM +RG ++ T + I
Sbjct: 204 IHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNAITYSTIISI 263
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
+ + G L + +L+ S ID+ + + Y + L + L R D
Sbjct: 264 WGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHE--LKRPD-- 319
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
N+ + + AG +++ F + +AG D+T F FS+ + ++ E
Sbjct: 320 NIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYRKYTNVGEVFE 379
Query: 314 HMKHESVGPDLVTYGCVVDAY 334
M+ PD V++AY
Sbjct: 380 KMRGLGYFPDSNVIALVLNAY 400
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 73/170 (42%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L +++ G+ P+ + L+ Y + EA ++ +
Sbjct: 152 CNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 212 RKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNAITYSTIISIWGKVGKLD 271
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
+++ S G +D I+ Y R G + + LKR ++
Sbjct: 272 RAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNI 321
>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
hermannioides]
Length = 382
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 71/353 (20%), Positives = 137/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +K+ G++
Sbjct: 13 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVM 72
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 73 PNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 132
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 133 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 192
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM SRG +S T + I + + G L + +L+ S ID+
Sbjct: 193 TLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQIL 252
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ + + AG +++ F +
Sbjct: 253 FQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAI 308
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG +T F S+ + ++ + M+ PD V++AY
Sbjct: 309 DAGEVKXITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAY 361
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + MK V P+ +Y ++ Y++
Sbjct: 28 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVE 87
Query: 337 KR 338
+
Sbjct: 88 NK 89
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 39/275 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A LV + + P ST LM V ++ + ++L S F + + L+
Sbjct: 304 AFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLY 363
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
Y R GC +E + D++ CR DL+P V Y+ I G L+ KEM +G
Sbjct: 364 GYCRTGCISEAFLLFDELKCR--DLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGL 421
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
D T + + G ++ + + +G++ F Y ++GE
Sbjct: 422 FPDIFTYTILVNGCFKLGYVSMARGFFNEML-------SKGLKPDRFAYNTR----IVGE 470
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
+ A S+Q E M AGF PD+ T+N+ A
Sbjct: 471 ---------------------MKIADTSVAFSMQEE---MLAAGFPPDVITYNVFVHALC 506
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ F + LE+M + + PD VTY +++ ++
Sbjct: 507 QQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFV 541
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 53/275 (19%), Positives = 110/275 (40%), Gaps = 48/275 (17%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY---GRIGCF 130
GLLPD ++ + + +A+ V+ + +V + ++D+Y GR+
Sbjct: 175 GLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQA 234
Query: 131 NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
E++S + + C D+ Y+ ++ K+G+LE + ++EM++ G +V + T N
Sbjct: 235 LELLSEMQERGCYPNDV---TYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPL 291
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
I + + G E +F ++E + R+
Sbjct: 292 INGFCQKGLFVE-----------------------AFDLVEEM-------------VNRR 315
Query: 251 DLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
L +N L+ ++ ++ F M ++ F PD+ +FN + R +
Sbjct: 316 AFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAF 375
Query: 310 LSLEHMKHESVGPDLVTYGCVVD-----AYLDKRL 339
L + +K + P ++TY ++ YLD L
Sbjct: 376 LLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAAL 410
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 6/182 (3%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+ L+ + ++ +A L + + + +LPD T L+ Y N G V +A+ + EE+++
Sbjct: 361 SCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVA 420
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
S V + L+D + ++G E ++ +++ R Y+ I F + G+ +
Sbjct: 421 SDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTV 480
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
L+EMV G + T + I + G L E RL+R E +A F
Sbjct: 481 AYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERD------ENCKADMF 534
Query: 228 TY 229
Y
Sbjct: 535 AY 536
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 117/312 (37%), Gaps = 19/312 (6%)
Query: 28 NGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
NGD ++ Y ++L+ L + + A +L ++ PD T ALM
Sbjct: 175 NGDCPPDVVAY---------STLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMD 225
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ EAQ V E + + +V S L+D + G + + ++ R +
Sbjct: 226 GLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEP 285
Query: 148 LPEVYSRAISCF----GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
Y+ I F G L LME EM + G D T N I + G E
Sbjct: 286 NVVTYNSLIHGFCMTNGVDSALLLME----EMTATGCLPDIITYNTLIDGLCKTGRAPEA 341
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLL 262
+G +K D + + K + M D+ L + L +++ ++ L+
Sbjct: 342 NRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM-LKQAVLPDVVTFSTLVE 400
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
Y + +R M + PD+ T+ F ++ + L+ M P
Sbjct: 401 GYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQP 460
Query: 323 DLVTYGCVVDAY 334
++VTY ++DA+
Sbjct: 461 NVVTYTALIDAF 472
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 72/378 (19%), Positives = 146/378 (38%), Gaps = 27/378 (7%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
T+S +HG + + + L R+++ V +L+ L R
Sbjct: 79 TYSTVIHGFCRQTKVDTAYK--------LFRQMVENGCMPNLVTYNTLLSGLCRNGLMDE 130
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A++L++ ++ GL PD + LM G + A V+E+ + V S L+
Sbjct: 131 AYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIA 190
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ G +E + +++ R P+V ++ + K +L+ + L+ M R
Sbjct: 191 GLCKTGRLDEACKLFEKM--RENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNC 248
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ + T ++ I + G + + + + R+ GI TY F +
Sbjct: 249 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMI-------VRGIEPNVVTYNSLIHGFCMTN 301
Query: 241 FLRDVGLGRKDLGN-------LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+ L +++ + +N L+ + R F M +PD+ T++
Sbjct: 302 GVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYS 361
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLD 353
F ++ + M ++V PD+VT+ +V+ Y + L + + L +M
Sbjct: 362 CLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVAS 421
Query: 354 D-SPVVSTDPYVFEAFGK 370
D SP V T + + F K
Sbjct: 422 DCSPDVYTYTSLVDGFCK 439
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 16/200 (8%)
Query: 143 RNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ + L P V YS I F +Q +++ ++MV G + T N + R G +
Sbjct: 69 KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLM 128
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLG 253
E AY L R + G++ F+Y K K M + D G
Sbjct: 129 DE---AYELLDEMR----ERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPD 181
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ ++ L+ ++ + F +M E PD+ TF + + LE
Sbjct: 182 VVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLE 241
Query: 314 HMKHESVGPDLVTYGCVVDA 333
M+ + P+++TY ++D
Sbjct: 242 TMEDRNCTPNVITYSSLIDG 261
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 108/255 (42%), Gaps = 7/255 (2%)
Query: 83 CALML-CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141
C+++L +G + +A+ V + L++S + + + + L++ Y +IG SI Q+
Sbjct: 331 CSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMK 390
Query: 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
R Y+ I+ GK ++ + + EM G + T N I Y R G L
Sbjct: 391 SRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLE 450
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
+ ++ + ++ + K K L D+ + G ++N ++
Sbjct: 451 KCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAII 510
Query: 262 LSYAGNFKMKSLQREFM---RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
+Y + S + FM +M +G P + T+N+ + S + L+ +++
Sbjct: 511 DAY---IECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNY 567
Query: 319 SVGPDLVTYGCVVDA 333
+ PD+++Y ++ A
Sbjct: 568 GLAPDVISYNTLISA 582
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ GR + +++ ++ +GL P+ + +++ + NG +LEA + +++
Sbjct: 438 TLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIK 497
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ QV + ++DAY G ++ + +++ +++ + P + Y+ I KQ Q+
Sbjct: 498 DVLPGAQVYNAIIDAYIECGSTDQAFMLAEKM--KSSGVPPSIVTYNLLIKGLCKQSQIS 555
Query: 167 LMENTLKEMVSRGFSVDSATGNAFI 191
E L + + G + D + N I
Sbjct: 556 EAEELLDSLRNYGLAPDVISYNTLI 580
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 52/267 (19%), Positives = 102/267 (38%), Gaps = 8/267 (2%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL P+ T L+ G + E V +E+ S V S L D + R G +
Sbjct: 253 GLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTM 312
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+S+ ++ + + S ++ K G++ E L+ +V+ G + N I
Sbjct: 313 LSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLING 372
Query: 194 YSRFGSL----TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
Y + G L + + RL R H+ I + K + + + ++
Sbjct: 373 YCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLG----KVERITEAHDLVIEMEKNG 428
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ +N L+ +Y +++ M E G P++ ++ AF + +
Sbjct: 429 VNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAV 488
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLD 336
L+ M + V P Y ++DAY++
Sbjct: 489 AILDDMFIKDVLPGAQVYNAIIDAYIE 515
Score = 37.7 bits (86), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ LG+ ++ AH LV ++ G+ P T L+ Y G + + ++ ++
Sbjct: 403 ALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEK 462
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQGQLE 166
+V +++A+ + G E ++I+D + + D+LP +VY+ I + + G +
Sbjct: 463 GLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIK--DVLPGAQVYNAIIDAYIECGSTD 520
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
++M S G T N I + ++E E
Sbjct: 521 QAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAE 558
>gi|242044488|ref|XP_002460115.1| hypothetical protein SORBIDRAFT_02g022950 [Sorghum bicolor]
gi|241923492|gb|EER96636.1| hypothetical protein SORBIDRAFT_02g022950 [Sorghum bicolor]
Length = 511
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 28/264 (10%)
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
AL+ + +G EA ++ E+ + + LM AY + E + ++
Sbjct: 179 AALINIFCFDGLKKEALIIQLEMEKRGIASNTSIYETLMKAYCKSNQIEEAEGLFVEMKE 238
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT- 201
+ Y+ + + ++ Q E++E+ L EM G + + N I Y R ++
Sbjct: 239 KGLQATTTTYNILMDAYSRRLQTEVVESLLFEMQDLGIRPSAGSYNCLISAYGRQKKMSG 298
Query: 202 EMETAYGRLKRS-------RHLI----DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
+ E A+ R+KR H I +EG++ TY L LR G K
Sbjct: 299 KAEDAFLRMKREVNGLHEKAHTIYVDMKREGLKPTLETYTA------LLNTLRRAGDTEK 352
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+ W ++ + K + + EF ++ G P + T+NI A+ R + L
Sbjct: 353 LMET--WKTMI-----DEKARDVIYEFGKI---GLKPTVMTYNILMNAYGRGGQHYKLPQ 402
Query: 311 SLEHMKHESVGPDLVTYGCVVDAY 334
L+ M + PD +TY V+ AY
Sbjct: 403 LLKEMAALELKPDSITYSTVIYAY 426
>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 825
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 130/333 (39%), Gaps = 43/333 (12%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQL----VNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQ 99
FV L+ L + K +A QL + T G + DN T ++ N G + E +
Sbjct: 166 FVASNLLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIMVKGLCNLGKIEEGR 225
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159
+ + V V + ++D Y + G ++++ + E Y I+ F
Sbjct: 226 RLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGF 285
Query: 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME--------------- 204
K G+ E ++ L EM +RG +++ N I ++G +TE
Sbjct: 286 CKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDI 345
Query: 205 TAY----------GRLKRSRHLIDKEGIRAV-----SFT-----YLKERKFFML-GEFLR 243
T Y GR++ + L++K R + S+T Y K+ + G R
Sbjct: 346 TTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFR 405
Query: 244 DVGLGRK-DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+G K DL + + + AG + + RE +M E G PD +NI +
Sbjct: 406 IAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVRE--KMMEKGVFPDAQIYNILMSGLCKK 463
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ L L M +V PD+ + ++D ++
Sbjct: 464 GRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFI 496
>gi|255661212|gb|ACU25775.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 426
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/325 (20%), Positives = 124/325 (38%), Gaps = 47/325 (14%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ G+ K A L++ ++ G++PD + L+ Y N LEA V+ E+
Sbjct: 84 SMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMREI 143
Query: 109 SFVLSVQVLSDLMDAYGRIG-----------------------------------CFNEI 133
+L + + ++D YG++ F E
Sbjct: 144 KCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEA 203
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I + + +N + Y+ + +GK + E N ++EM SRG ++ T + I
Sbjct: 204 IHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHSRGIEPNAITYSTIISI 263
Query: 194 YSRFGSLTEMETAYGRLKRS----RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
+ + G L + +L+ S H++ + I A L +L E R + R
Sbjct: 264 WGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPR 323
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
++L AG +++ F + +AG D+T F FS+ + ++
Sbjct: 324 DTAIHIL--------AGAGRIEEATWVFRQAIDAGEVKDITVFERMVDLFSKYKKYPNVV 375
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAY 334
E M+ PD V++AY
Sbjct: 376 EVFEKMRGLGYFPDSNVIALVLNAY 400
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 73/170 (42%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L +++ G+ P+ + L+ Y + EA ++ +
Sbjct: 152 CNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 212 RKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHSRGIEPNAITYSTIISIWGKVGKLD 271
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
+++ S G +D I+ Y R G + + LKR ++
Sbjct: 272 RAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKRPDNI 321
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 129/305 (42%), Gaps = 30/305 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + + A ++ +++ GL P+ +T L+ YA G ++E + + ++ +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ V S L+ AY + G ++ + + ++ R L P+ Y I K G++E
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKM--RQQGLNPDTVTYGTVIGILCKSGRVE 426
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
++M+ S GN I+Y S SL + + +++ LI + R +
Sbjct: 427 DAMRYFEQMIDERLS----PGN--IVYNSLIHSLC----IFDKWDKAKELILEMLDRGIC 476
Query: 227 F----------TYLKERKFF---MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
++ KE + L + + +G+ + D+ + ++ L+ Y KM
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGV-KPDI--ITYSTLIDGYCLAGKMDEA 533
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ M G PD T+N + ++S D + M+ V PD++TY ++
Sbjct: 534 TKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQG 593
Query: 334 YLDKR 338
R
Sbjct: 594 LFQTR 598
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/205 (17%), Positives = 84/205 (40%), Gaps = 2/205 (0%)
Query: 132 EIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
E + ++ + D P+V Y+ I+ F K+G L+ T EM+ RG + T ++
Sbjct: 180 EALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSS 239
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
I + ++ + + ++ + + ++ Y + FL+ +
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ + +N L+ N + ++ F M++ G P++TT+ ++ ++H
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAY 334
L+ M + P+ + ++ AY
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAY 384
>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 426
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/353 (19%), Positives = 138/353 (39%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTASYSTLLTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVL 291
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L + L R D N+ ++ + AG +++ F +
Sbjct: 292 YQTMIVAYERAGLVAHAKRLLHE--LKRPD--NIPRDIAIHILAGAGRIEEATWVFRQAI 347
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+ F FS+ + ++ + M+ PD +++AY
Sbjct: 348 DAGEVKDIXVFERMIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAY 400
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F R+ +GF PDL +N F + +F + + M+ V P+ +Y ++ Y++
Sbjct: 67 FSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVE 126
Query: 337 KR 338
R
Sbjct: 127 NR 128
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Brachypodium distachyon]
Length = 938
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 115/301 (38%), Gaps = 40/301 (13%)
Query: 37 RYRKQEGFVDCA---SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
R + Q VD SLV L R + A +V+T+K +G+ P+ T ++ Y
Sbjct: 199 RMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRN 258
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS 153
V +A ++EE++ + V LS L+ + G F+E ++ ++ A Y
Sbjct: 259 AVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYC 318
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
I K + + L E+VSRG +D A + + + G + E + +
Sbjct: 319 MLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMF------ 372
Query: 214 RH-LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
RH L D V++T L + L AGN +
Sbjct: 373 RHALSDNHTPNGVTYTVLIDA----------------------------LCKAGN--VDG 402
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
++ M E P++ TF+ + + MK + P++VTYG V+D
Sbjct: 403 AEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVID 462
Query: 333 A 333
Sbjct: 463 G 463
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 136/362 (37%), Gaps = 43/362 (11%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ R+ K A +L+N +K + P+ T L++ G V +A+ + E+ SS
Sbjct: 599 TMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSS 658
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
F + ++ A + + I+ I + + NA L + VY+ + G
Sbjct: 659 GFSPTSLTHRRVLQACSQGRRSDLILEIHEWM--MNAGLCADITVYNTLVRVLCYNGMTR 716
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L+EM RG + D+ T NA I+ + + G L + Y ++ L +
Sbjct: 717 KAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQM-----LYHGISPNVAT 771
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDL------------GNLLWNLLLLSYAGNFKMKSLQ 274
F L LG +G D+ NL +++L+ Y
Sbjct: 772 FNTL-------LGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAV 824
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R + M GF P ++T+N FS++ M M++ V P TY +V +
Sbjct: 825 RLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGW 884
Query: 335 LDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRK 393
R G + L M SP KG S S AF K W R+
Sbjct: 885 SKLRNGTEVRKFLKDMKEKGFSP------------SKGTLSSISRAF--SKPGMSWEARR 930
Query: 394 LI 395
L+
Sbjct: 931 LL 932
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 102/254 (40%), Gaps = 37/254 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + G+ PD T AL+L + +G + A ++++L +V + L+
Sbjct: 718 AMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLG 777
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G E +++++ R + Y ++ +GKQ EMV +GF
Sbjct: 778 GLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLP 837
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
+T NA I +S+ G +++ + + ++ G+ S TY
Sbjct: 838 KVSTYNALISDFSKVGMMSQAKELFNEMQ-------NRGVLPTSCTY------------- 877
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR-MSEAGFHPDLTTFNIRAVAFSR 301
D+ L+S + + R+F++ M E GF P T + + AFS+
Sbjct: 878 -DI---------------LVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSK 921
Query: 302 MSMFWDLHLSLEHM 315
M W+ L+++
Sbjct: 922 PGMSWEARRLLKNL 935
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 71/338 (21%), Positives = 131/338 (38%), Gaps = 29/338 (8%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELL 106
+L++ L ++ K A + S+ P+ T L+ LC A N V A+ V E+
Sbjct: 354 ALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGN--VDGAEQVLSEME 411
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS----CFGKQ 162
S +V S +++ + G + + ++ R D Y I C G++
Sbjct: 412 EKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQE 471
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
L++ EM+ G V+ ++ + + G + + E + + L+D
Sbjct: 472 AALDVYH----EMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDH--- 524
Query: 223 RAVSFTYLKERKF--------FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
V++T L + F F +G+ L + L +++N+ + K K +
Sbjct: 525 --VNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPD---AVVYNVFINCLCMLGKSKEAE 579
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M G PD T+N A SR L MK S+ P+L+TY ++
Sbjct: 580 SFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGL 639
Query: 335 LDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKG 371
+ + L++M+ SP T V +A +G
Sbjct: 640 FEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQG 677
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 118/289 (40%), Gaps = 39/289 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L ++++ A L+N ++ G+ PD T L+ Y G + +A +++ +L+
Sbjct: 310 TLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ 369
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ + L+D R G ++ + D + R ++ P YS I ++GQ+E
Sbjct: 370 RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSR--EIFPNHVTYSILIDSHCEKGQVE 427
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L EM+++G + T N+ I Y R G++++ +
Sbjct: 428 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQ---------------------- 465
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+FL+ + + + + +N L+ Y KM + M +
Sbjct: 466 -------------KFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 512
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
PD+ T+N+ FS + E M + + PD TY +++ ++
Sbjct: 513 PDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHV 561
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 135/352 (38%), Gaps = 74/352 (21%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
R A LV+++ S+GL P T +++ +G +A V++E+ V+
Sbjct: 142 RAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVR 201
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLK 173
+ L+ + R+G E + I ++ R+ + P++ +S I F ++G+++ L+
Sbjct: 202 SFTILIGGFCRVGEIEEALKIYKEM--RHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLR 259
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEM-------------------ETAYGRLKRSR 214
EM G D I + R G +++ T L + R
Sbjct: 260 EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 319
Query: 215 HLIDKEGI------RAV-----SFTYL-----------KERKFF--MLGEFLR-DV---- 245
L+D EG+ R V +FT L K + F ML + LR D+
Sbjct: 320 RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYN 379
Query: 246 ----GLGRK---DLGNLLWN---------------LLLLSYAGNFKMKSLQREFMRMSEA 283
G+ R+ D N LW+ +L+ S+ +++ M
Sbjct: 380 TLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINK 439
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
G P++ T+N + R L+ M V PDL+TY ++ Y+
Sbjct: 440 GILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYI 491
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 118/315 (37%), Gaps = 51/315 (16%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ ++ G+ PD + L+ +A G + A E+ V + + ++
Sbjct: 219 ALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIG 278
Query: 123 AYGRIGCFNEIISIIDQ-VSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRG 179
+ R G ++ + + D+ V C LP+V Y+ ++ K+ +L E L EM RG
Sbjct: 279 GFCRAGLMSDALRVRDEMVGC---GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335
Query: 180 FSVDSATGNAFIIYYS-------------------------RFGSLTEMETAYGRLKRSR 214
D T I Y + +L + G L ++
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 395
Query: 215 HLIDKEGIRA-----VSFTYL---------KERKFFMLGEFLRDVGLGRKDLGNLL-WNL 259
L D R V+++ L E F L E + + L N++ +N
Sbjct: 396 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMIN-----KGILPNIMTYNS 450
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
++ Y + + Q+ +M PDL T+N + + D L M+ E
Sbjct: 451 IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK 510
Query: 320 VGPDLVTYGCVVDAY 334
V PD+VTY +++ +
Sbjct: 511 VQPDVVTYNMLINGF 525
>gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa]
gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa]
Length = 416
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 103/258 (39%), Gaps = 46/258 (17%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
YS+ IS GK+GQ + EM + G D++ NA I
Sbjct: 92 YSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALI-------------------- 131
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+ HL K+ ++++ L F + + R + +N++L ++A +
Sbjct: 132 -TAHLHSKDKAKSLTKA---------LAYFEKMKSIERCQPNVVTYNIILRAFAQARNVN 181
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ F + E+ PD+ T+N A+ + M ++ L MK + PD++T+ ++
Sbjct: 182 QVNALFKDLEESIVSPDIYTYNGVLDAYGKNGMIREMESVLSRMKIDQCKPDIITFNLLI 241
Query: 332 DAYLDKRLGRNLDFG------LSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKR 385
D+Y G+ DF S + + P + T + +GK +E+ +
Sbjct: 242 DSY-----GKKQDFEKMEQVFKSLLRSKEKPTLPTFNSMIVNYGKARLKDKAESVFKKMA 296
Query: 386 QRKW-----TYRKLIAVY 398
++ T+ LI +Y
Sbjct: 297 DMRYTPSFITFESLIMMY 314
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
KMKS++R P++ T+NI AF++ ++ + ++ V PD+ TY
Sbjct: 153 KMKSIER---------CQPNVVTYNIILRAFAQARNVNQVNALFKDLEESIVSPDIYTYN 203
Query: 329 CVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKG-DFHSSSEAFLEFKRQ 386
V+DAY + R ++ LS+M +D P + T + +++GK DF + F R
Sbjct: 204 GVLDAYGKNGMIREMESVLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKMEQVFKSLLRS 263
Query: 387 RK----WTYRKLIAVYLKKQLR 404
++ T+ +I Y K +L+
Sbjct: 264 KEKPTLPTFNSMIVNYGKARLK 285
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/313 (19%), Positives = 125/313 (39%), Gaps = 9/313 (2%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY---ANNGFVLEAQVVWEE 104
+ L+ +G+K + +A L + +++ G PD S AL+ + + L + + E
Sbjct: 93 SKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKSLTKALAYFE 152
Query: 105 LLSSSFVLSVQVLS--DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR--AISCFG 160
+ S V++ ++ A+ + N++ ++ + + + P++Y+ + +G
Sbjct: 153 KMKSIERCQPNVVTYNIILRAFAQARNVNQVNALFKDLE--ESIVSPDIYTYNGVLDAYG 210
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K G + ME+ L M D T N I Y + +ME + L RS+
Sbjct: 211 KNGMIREMESVLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKMEQVFKSLLRSKEKPTLP 270
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
++ Y K R + + R + + L++ Y + + F M
Sbjct: 271 TFNSMIVNYGKARLKDKAESVFKKMADMRYTPSFITFESLIMMYGICDCVSKARDIFDDM 330
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
E+G ++T N + + + H+ LE+ + V P+ TY + AY ++
Sbjct: 331 VESGKEVKVSTLNAVLNVYCMNGLHMEAHILLENARSIGVPPNSSTYKLLYRAYTKAKMK 390
Query: 341 RNLDFGLSKMNLD 353
+ L M+ D
Sbjct: 391 ELVQKLLKHMDKD 403
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 129/318 (40%), Gaps = 31/318 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + + A ++ +++ GL PD +T C L+ YA G ++E + + ++ +
Sbjct: 306 SLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRN 365
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V + L+ AY + +E + + ++ R L P V Y I K G ++
Sbjct: 366 GIHPDHHVFNILICAYAKQEKVDEAMLVFSKM--RQHGLNPNVVTYGAVIGILCKSGSVD 423
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
++M+ G + + I+Y S SL + + ++ LI + R +
Sbjct: 424 DAMLYFEQMIDEGLTPN------IIVYTSLIHSL----CIFDKWDKAEELILEMLDRGIC 473
Query: 227 F----------TYLKERKFFMLGEFLRD--VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
++ KE + E L D V +G K + ++ L+ Y KM
Sbjct: 474 LNTIFFNSIIHSHCKEGRVIE-SEKLFDLMVRIGVKP-NVITYSTLIDGYCLAGKMDEAT 531
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ M G PD T+N + R+S D + M V P+++TY ++
Sbjct: 532 KLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 591
Query: 335 LDKR---LGRNLDFGLSK 349
R + L G++K
Sbjct: 592 FHTRRTAAAKELYVGITK 609
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 28/198 (14%)
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+V YS I+ K ++ L MV G + T N+ + Y S + + A
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYC---SSEQPKEA 285
Query: 207 YGRLKRSRHLIDKEGIRAVSFTY-------------LKERKFFMLGEFLRDVGLGRKDLG 253
G LK+ R +G+ TY + RK F + + GL D+
Sbjct: 286 IGFLKKMR----SDGVEPDVVTYNSLMDYLCKNGRSTEARKIF---DSMTKRGL-EPDIA 337
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ LL YA + + M G HPD FNI A+++ + L
Sbjct: 338 T--YCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFS 395
Query: 314 HMKHESVGPDLVTYGCVV 331
M+ + P++VTYG V+
Sbjct: 396 KMRQHGLNPNVVTYGAVI 413
>gi|297847648|ref|XP_002891705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337547|gb|EFH67964.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 823
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/305 (20%), Positives = 118/305 (38%), Gaps = 17/305 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A L++ + K+ +A +L+ + G PD T L+ +G + +A + +L+
Sbjct: 384 APLIQAYCKSKEYDIASKLLLQLAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLID 443
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+ + LM + G F + ++ R+ +LP+ VY+ I F + G
Sbjct: 444 RGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRS--ILPDAYVYATLIDGFIRSGDF 501
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ V +G VD NA I + R G L E R+ + DK +
Sbjct: 502 DEARKVFTLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTI 561
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y+K++ + RD+ + + + L+ + + F M
Sbjct: 562 IDGYVKQQDMATAIKIFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDL 621
Query: 286 HPDLTTFNIRAVAFSRMS-------MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
P++ T+ +F++ S +W+L M P+ VT+ C++ ++ K
Sbjct: 622 VPNVVTYTTLIRSFAKESSTLEKAVYYWEL------MMTNKCVPNEVTFNCLLQGFVKKT 675
Query: 339 LGRNL 343
GR L
Sbjct: 676 SGRFL 680
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 71/411 (17%), Positives = 147/411 (35%), Gaps = 51/411 (12%)
Query: 38 YRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLE 97
Y + C +L+ + + ++ A ++ + + G DN + C ++ + G V E
Sbjct: 164 YDSVPDVIACNALLSLVVKSRRLEDARKVYDEMCERGGCVDNYSTCIMVKGMCSEGKVEE 223
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157
+ + E+ V ++ + ++ Y ++G + ++ + E + I+
Sbjct: 224 GRKLIEDRWGKGCVPNIVFYNTIIGGYCKLGDIENAKLVFKELKLKGFMPTLETFGTMIN 283
Query: 158 CFGKQGQLELMENTLKEMVSR-------------------GFSVDSATGNAFIIY----- 193
F K+G + L+E+ R GF VD A +I+
Sbjct: 284 GFCKKGDFVASDRLLEEVKERGLRVCVWFLNNIIDAKYRHGFKVDPAESIRWIVANDCKP 343
Query: 194 -YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT----------YLKERKFFMLGEFL 242
+ + L G+ + + L+D+ + + T Y K +++ + + L
Sbjct: 344 DIATYNILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAPLIQAYCKSKEYDIASKLL 403
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ + + +L+ + M +++ + G PD +N+ +
Sbjct: 404 LQLAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKT 463
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK--MNLDDSPVVST 360
F L M S+ PD Y ++D ++ R+ DF ++ L V
Sbjct: 464 GRFLPAKLLFSEMLDRSILPDAYVYATLIDGFI-----RSGDFDEARKVFTLSVEKGVKV 518
Query: 361 DPYVFEAFGKGDFHSS--SEAFLEFKRQR-------KWTYRKLIAVYLKKQ 402
D A KG S EA R K+TY +I Y+K+Q
Sbjct: 519 DVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQ 569
>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 128/317 (40%), Gaps = 42/317 (13%)
Query: 32 ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC--- 88
ARK+ +++ V SL+ + P A L+ + P+ T +L+
Sbjct: 105 ARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164
Query: 89 YANNGF-----VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
+A++G L + W E V V S L+D Y R G + ++ D++ +
Sbjct: 165 HADSGIGRQIHALAVKCDWHE--------DVYVGSALLDMYARCGMMDMATAVFDKLDSK 216
Query: 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
N ++ IS F ++G E T EM+ GF T ++ +R G+L +
Sbjct: 217 NG----VSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG 272
Query: 204 ETAYGRLKRSRH---------LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
+ + + +SR L+D + A S + + RK F + + D KDL
Sbjct: 273 KWVHAHMIKSRQKMTAFAGNTLLD---MYAKSGSMIDARKVF---DRVDD-----KDL-- 319
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ WN +L ++A K F M ++G + + TF A S + + E
Sbjct: 320 VTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEM 379
Query: 315 MKHESVGPDLVTYGCVV 331
MK + P++ + VV
Sbjct: 380 MKEYDLEPEIDHFVTVV 396
>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 855
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 126/329 (38%), Gaps = 43/329 (13%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
KQ GF V SL+ GR +KP A ++ +K L P+ + AL+ Y +NG +
Sbjct: 389 KQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLL 448
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
+A + E+ +V + L+ A GR G +I +++ R L Y+ A
Sbjct: 449 EDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSA 508
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I + G+ + + M + DS T + + S +++ A ++ H
Sbjct: 509 IGSYINVGEYDKAIDLYNSMRKKKIKSDSVT---YTVLISGCCKMSKFGEALSFMEEMMH 565
Query: 216 L---IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
L + KE ++ Y K+ LG+ +NL MKS
Sbjct: 566 LKLPMSKEVYSSIICAYSKQAS-----------ALGQIIEAESTFNL----------MKS 604
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
L G PD+ T+ A++ + L+ E M+ V D + ++
Sbjct: 605 L----------GCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIACAALMR 654
Query: 333 AY-LDKRLGRNLDFGLSKMNLDDSPVVST 360
A+ + GR L S M D P+ T
Sbjct: 655 AFNKGGQPGRVLSLAQS-MREKDIPLSDT 682
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 117/285 (41%), Gaps = 32/285 (11%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
N + +EGL P+ + AL+ YA G EA V+ E+ + F V + L++AYGR
Sbjct: 351 NMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRS 410
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ I + RN +L P + Y+ I +G G LE L+EM +
Sbjct: 411 RKPQKAREIFKMIK-RN-NLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVV 468
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE-RKFFMLGEFLRD 244
+ + R G +++T + GI+ + Y + +GE+ +
Sbjct: 469 SICTLLAACGRCGQKVKIDTVLS-------AAEMRGIKLNTVAYNSAIGSYINVGEYDKA 521
Query: 245 VGL-----GRKDLGNLLWNLLLLSYAGNFKMK------SLQREFMR----MSEAGFHPDL 289
+ L +K + + +L+S G KM S E M MS+ + +
Sbjct: 522 IDLYNSMRKKKIKSDSVTYTVLIS--GCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSII 579
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ +A A ++ + + MK PD+VTY ++DAY
Sbjct: 580 CAYSKQASALGQI---IEAESTFNLMKSLGCSPDVVTYTAMLDAY 621
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 12/222 (5%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVS 177
L++A+GR G + ++I+D + A + P Y+ I+ G G + N K+M
Sbjct: 191 LINAHGRAGQWRWAMNIMDDM--LRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTD 248
Query: 178 RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF- 236
G D T N + + + G+ +Y L + H+ + L + K +
Sbjct: 249 NGVGPDLVTHNIMLTAF-KSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYD 307
Query: 237 ----MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ D+ + L S G+ +++ + F M G P++ ++
Sbjct: 308 KAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGH--IENCEAAFNMMLAEGLKPNIVSY 365
Query: 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
N A++ M + +K PD+V+Y +++AY
Sbjct: 366 NALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAY 407
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/324 (20%), Positives = 131/324 (40%), Gaps = 26/324 (8%)
Query: 27 KNGDL--ARKIIRYRKQEGFV----DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K G++ A ++++ + GFV +L+ ++ K +L + +G+ PD
Sbjct: 503 KTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTF 562
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T L+ G + EA +W E S V +V ++D Y + E + ++
Sbjct: 563 TYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTEL 622
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+N +L VY+ I + + G +M S+G +AT + SL
Sbjct: 623 LTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTAT----------YSSL 672
Query: 201 TEMETAYGRLKRSRHLID---KEGI--RAVSFT-----YLKERKFFMLGEFLRDVGLGRK 250
GR++ ++ LID KEG+ V +T Y K + + L+++
Sbjct: 673 IHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDI 732
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+ + +++ Y+ + MK+ + M G PD T+N+ F + +
Sbjct: 733 HPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFK 792
Query: 311 SLEHMKHESVGPDLVTYGCVVDAY 334
++M E + D +TY +V +
Sbjct: 793 ICDYMSQEGLPLDEITYTTLVHGW 816
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 105/266 (39%), Gaps = 4/266 (1%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P++ L L+ G +A +W LL F ++ + L+ + G E + +
Sbjct: 454 PNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRL 513
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ ++ R L Y+ IS K+G++E EMV +G D+ T N I R
Sbjct: 514 LKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCR 573
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT-YLKERKFFMLGEFLRDVGLGRKDLGNL 255
G L E + K SR L+ V Y K K + ++ +L ++
Sbjct: 574 IGKLDEAVNLWNECK-SRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSV 632
Query: 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315
++N L+ +Y N + M G P T++ + D ++ M
Sbjct: 633 VYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM 692
Query: 316 KHESVGPDLVTYGCVVDAYLDKRLGR 341
+ E + P++V Y ++ Y +LG+
Sbjct: 693 RKEGLLPNVVCYTALIGGYC--KLGQ 716
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 123/318 (38%), Gaps = 22/318 (6%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
EA V +E L F + V + L+D Y ++G + + I + + + + I
Sbjct: 334 EANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSII 393
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
F K GQ+E E L+EM+SRGFS++ II++ S E + R R++
Sbjct: 394 QGFCKIGQMEQAECILEEMLSRGFSINPGAFTT-IIHWLCMNSRFESALRFLREMLLRNM 452
Query: 217 IDKEGIRAVSFTYL-KERKFFMLGEF---LRDVGLGRKDLGNLL-WNLLLLSYAGNFKMK 271
+G+ L KE K E L + G G NL+ N L+ M+
Sbjct: 453 RPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFG----ANLVTTNALIHGLCKTGNMQ 508
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
R +M E GF D T+N + + M + + PD TY ++
Sbjct: 509 EAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 568
Query: 332 DAYLDKRLGRNLDFGLSKMN----LDDSPVVSTDPYVFEAFGKGD-FHSSSEAFLEFKRQ 386
R+G+ LD ++ N D P V T + + + K D + F E Q
Sbjct: 569 HGMC--RIGK-LDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ 625
Query: 387 ----RKWTYRKLIAVYLK 400
Y LI Y +
Sbjct: 626 NLELNSVVYNTLIRAYCR 643
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 63/336 (18%), Positives = 131/336 (38%), Gaps = 51/336 (15%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDL--GRKKKP 60
T+S+ ++G K ++FN A +++ ++GF + L G K
Sbjct: 318 TYSVLINGLMKLEKFNE------------ANSVLKETLEKGFTPNEVVYNTLIDGYCKMG 365
Query: 61 HL--AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
+L A ++ + S+G+ P++ TL +++ + G + +A+ + EE+LS F ++ +
Sbjct: 366 NLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFT 425
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
++ F + + ++ RN + + + K+G+ ++ +
Sbjct: 426 TIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK 485
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF + T NA I + G+ M+ A LK+ + ER F
Sbjct: 486 GFGANLVTTNALIHGLCKTGN---MQEAVRLLKK-----------------MLERGFV-- 523
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
L + +N L+ K++ + M + G PD T+N+
Sbjct: 524 -------------LDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHG 570
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R+ + K + P++ TYG ++D Y
Sbjct: 571 MCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGY 606
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 31/258 (12%)
Query: 92 NGF--VLEAQVVW---EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
+GF V +V W EE+ S+ + L+DA+G+ G NE+ + D++ R
Sbjct: 798 DGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCK 857
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
Y+ IS K +L+ + +VS FS T FG L +
Sbjct: 858 PNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCT----------FGPLIDGLLK 907
Query: 207 YGRLKRSRHLID---KEGIRAVSFTY-LKERKFFMLGE-------FLRDVGLG-RKDLGN 254
GRL + + D G R S Y + + LG F R V G R DL +
Sbjct: 908 SGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKS 967
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ +L AG ++ F ++ +AG PDL +N+ R S + LSL H
Sbjct: 968 YTILVDILCIAG--RVDDALHYFEKLKQAGLDPDLVAYNLMINGLGR-SQRTEEALSLFH 1024
Query: 315 -MKHESVGPDLVTYGCVV 331
M++ + PDL TY ++
Sbjct: 1025 EMQNRGIVPDLYTYNSLI 1042
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/345 (19%), Positives = 128/345 (37%), Gaps = 43/345 (12%)
Query: 30 DLARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A +I++ +G V L++ L +K A L +KS PD T L
Sbjct: 281 DEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTL 340
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ +++ G + + + +W E+ + + V + L++A + G NE ++D + R
Sbjct: 341 LDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTM--RKQ 398
Query: 146 DLLPEVYS---------RA----------------------------ISCFGKQGQLELM 168
+LP +++ RA I GK G
Sbjct: 399 GVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKA 458
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
T ++M +RG + + NA + + G L E + + LK S D +
Sbjct: 459 LETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKC 518
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y K + + L ++ + + ++ N L+ + +++ + F RM E P
Sbjct: 519 YSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPT 578
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ T+NI + E M P+ +T+ ++D
Sbjct: 579 VVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDC 623
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/358 (21%), Positives = 138/358 (38%), Gaps = 45/358 (12%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
+ R+IIR + SL G ++ P ++ + G + + + L+
Sbjct: 150 MQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKM----REAGFVLNAYSYNGLIHFLL 205
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
+GF EA V+ ++S S++ S LM A G+ ++ +++++ + L P
Sbjct: 206 QSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEM--ESMGLRPN 263
Query: 151 VYSRAIS--CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
+Y+ I G+ G+++ +K M G D T I L + +
Sbjct: 264 IYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFT 323
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
++K S H DK TY+ +L +F D G+L
Sbjct: 324 KMKSSSHKPDK-------VTYVT-----LLDKF--------SDCGHL------------- 350
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+++ + M G+ PD+ TF I A + + L+ M+ + V P+L TY
Sbjct: 351 --DKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYN 408
Query: 329 CVVDAYL-DKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFK 384
++ L RL LD + +L P T + + GK G + E F + K
Sbjct: 409 TLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMK 466
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 25 HPKNGDLARKIIRYRKQEG------FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD 78
H K+G + + + K + V C + + L + A + N +KS GL PD
Sbjct: 449 HGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPD 508
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
+ T +M CY+ G V EA + E+ V V++ L+D + G E
Sbjct: 509 SVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAW---- 564
Query: 139 QVSCR--NADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
Q+ CR +L P V Y+ ++ GK+GQ++ + M G S ++ T N +
Sbjct: 565 QMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLL 621
>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 114/271 (42%), Gaps = 16/271 (5%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ P T L+ ++ V A+ +++E+ + L+ Y + G ++
Sbjct: 142 GIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKG 201
Query: 134 ISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ +++ + + +LP +Y+ +S F ++G+ + E +++M G D T N+ I
Sbjct: 202 LELLNAM--ESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRI 259
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGI-RAVSFTYLKERKFFMLGEFLRDVGL--- 247
+ G + + + ++ +L G+ R S TY K F L D
Sbjct: 260 SALCKEGKVLDASRIFSDMELDEYL----GLPRPNSITYNLMLKGFCKVGLLEDAKTLFE 315
Query: 248 ---GRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
DL +L +N+ L + K + +M++ G P + ++NI ++
Sbjct: 316 SIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLG 375
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M D + MK V PD VTYGC++ Y
Sbjct: 376 MLSDAKTIVGLMKRNGVCPDAVTYGCLLHGY 406
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 136/321 (42%), Gaps = 16/321 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +V +K G+ PD T L+ Y + G V A+ + +E++ ++ + + + L+
Sbjct: 380 AKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLH 439
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ ++G +E ++ +++ + L + + G+L+ +K M G +
Sbjct: 440 SLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAA 499
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI-RAVSFTYLKERKFFMLGEF 241
GN++I SL E + S L G+ +A F K M+GE
Sbjct: 500 LGNLGNSYIGLVDD--SLIENNCLPDLITYSTLL---NGLCKAGRFAEAKNLFAEMMGEK 554
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
L+ ++ +N+ + + K+ S R M + G H L T+N +
Sbjct: 555 LQP--------DSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGI 606
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSPVVST 360
+ +++H ++ MK + + P++ TY + + +++ + M + +P V +
Sbjct: 607 KNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFS 666
Query: 361 DPYVFEAFGK-GDFHSSSEAF 380
Y+ EAF K DF + E F
Sbjct: 667 FKYLIEAFCKVPDFDMAQEVF 687
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 103/252 (40%), Gaps = 8/252 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V R+ + + ++V ++ EGL+PD T + + G VL+A ++ ++
Sbjct: 222 TIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELD 281
Query: 109 SFV---LSVQVLSDLM-DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQ 162
++ + +LM + ++G + ++ + + R D L + S I G +
Sbjct: 282 EYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESI--RENDDLASLQSYNIWLQGLVRH 339
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G+ E LK+M +G + N + + G L++ +T G +KR+ D
Sbjct: 340 GKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTY 399
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ Y K L+++ N+LL S ++ + +M+E
Sbjct: 400 GCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNE 459
Query: 283 AGFHPDLTTFNI 294
G+ D T NI
Sbjct: 460 KGYGLDTVTCNI 471
>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial; Flags: Precursor
gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 601
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 116/295 (39%), Gaps = 12/295 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++V + K A + +++EG D + L+ + G + V L
Sbjct: 186 TTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYR 245
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ ++V V + L+D Y ++G I + +V R + IS F + G
Sbjct: 246 TGLPMNVVVETSLVDMYAKVG----FIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANK 301
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ EM S GF D T ++ S+ GSL + + + RH++D+ A+
Sbjct: 302 AFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILK-RHVLDRVTATALMD 360
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y K E VG RKDL + WN ++ Y + + + F++M+E+ P
Sbjct: 361 MYSKCGALSSSREIFEHVG--RKDL--VCWNTMISCYGIHGNGQEVVSLFLKMTESNIEP 416
Query: 288 DLTTFNIRAVAFSRMSMF-WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
D TF A S + H + + P Y C++D L R GR
Sbjct: 417 DHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYVCLID--LLARAGR 469
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 107/281 (38%), Gaps = 28/281 (9%)
Query: 32 ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN 91
ARK+ Q G S++ R K P +L + + +E + PD+ST + +
Sbjct: 69 ARKVFDELPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTF-TMTIKACL 127
Query: 92 NGFVLE-AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
+G VLE + VW + + + V V S +++ Y + G +E + +++ R+
Sbjct: 128 SGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVI---- 183
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
++ ++ F + G+ +EM + GF D + G + +G L
Sbjct: 184 CWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYL 243
Query: 211 KRS---------RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
R+ L+D V F + R F + F V W L+
Sbjct: 244 YRTGLPMNVVVETSLVDMYA--KVGFIEVASRVFSRM-MFKTAVS----------WGSLI 290
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+A N + M GF PDL T VA S++
Sbjct: 291 SGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQV 331
>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 942
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/359 (19%), Positives = 141/359 (39%), Gaps = 59/359 (16%)
Query: 29 GDL--ARKIIRYRKQEGFVDCAS----LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
GD+ A+K++ ++G + + L++ ++ + A +L+ + + L D
Sbjct: 305 GDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVY 364
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
L+ Y G V +A + + +L ++ + + L++ Y ++G N+ ++ VS
Sbjct: 365 GVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVL--VSM 422
Query: 143 RNADLLPEVY--SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
++ +L P+ Y + + F KQ EM ++G + T N + G +
Sbjct: 423 KDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHV 482
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE-RKFFMLGEFLRDVGLGRKDLGN----- 254
+ +L+ K G+ TY FF +G F R + + + L
Sbjct: 483 EHALHIW-------NLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKS 535
Query: 255 -LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN------------IRAVAFSR 301
L+N ++ + K+ Q F++M E GF PD T+ + A+
Sbjct: 536 ITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKD 595
Query: 302 MS-----------------------MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
MS L+ L MK+ + P++VTYG ++ + DK
Sbjct: 596 MSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDK 654
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 14/164 (8%)
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
LC + N + + + + +LL F L+ A +G NE + D + NA
Sbjct: 756 LCKSKN--IDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMI--NAG 811
Query: 147 LLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
L+P VY+ I+ K G L+ ++ +G S T N I Y + G TE
Sbjct: 812 LVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEAL 871
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLK-ERKFFMLGEFLRDVGL 247
+++ +EGI S TY +M G+ + VGL
Sbjct: 872 ELKDKMR-------EEGICPSSITYSTLIHGLYMEGKSEQSVGL 908
Score = 37.7 bits (86), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 46/259 (17%), Positives = 102/259 (39%), Gaps = 10/259 (3%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G +P + +L+ NG +A +V+E++++ + + + +++AY + G +E
Sbjct: 216 GRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEA 275
Query: 134 ISIIDQV--SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ + ++ SC +++ Y+ I + G + + L M +G +S T I
Sbjct: 276 FNFVKEMERSCCEPNVV--TYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLI 333
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLGEFLRDVGLG 248
Y + G + + E G + +D+ + Y + + + + VGL
Sbjct: 334 KGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGL- 392
Query: 249 RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
+ ++ N L+ Y + + M + PD +N F + F
Sbjct: 393 --KMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKA 450
Query: 309 HLSLEHMKHESVGPDLVTY 327
+ M ++ V +VTY
Sbjct: 451 FKLCDEMHNKGVNFTVVTY 469
>gi|115435438|ref|NP_001042477.1| Os01g0228400 [Oryza sativa Japonica Group]
gi|17385740|dbj|BAB78680.1| putative leaf protein [Oryza sativa Japonica Group]
gi|113532008|dbj|BAF04391.1| Os01g0228400 [Oryza sativa Japonica Group]
gi|215740499|dbj|BAG97155.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 636
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 121/287 (42%), Gaps = 12/287 (4%)
Query: 53 DLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQ-VVWEELLSSSFV 111
D GR ++ A ++V +++ G PD T L YA N A+ +V E +
Sbjct: 237 DAGRLEE---AWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQAGLR 293
Query: 112 LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELME 169
S + ++ Y R G E + + Q+ +++ +LP V ++ + F + ++
Sbjct: 294 TSERTWGIIVGGYCREGRLGEALRCVRQM--KDSGVLPNVIVFNTLLKGFLDANDMAAVD 351
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+ L M G D T + + S G + + + ++ + D + ++ Y
Sbjct: 352 DVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGY 411
Query: 230 LKERKFFMLGEFLRDVG-LG-RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
++ ++ E LR +G LG R ++ + + ++ + M + R + M +AG P
Sbjct: 412 VRAQQPEKAEELLRQMGRLGVRPNV--VTFTTVISGWCSVADMGNAVRVYAAMRDAGVRP 469
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+L TF +S + W L+ M+ V P TY V DA+
Sbjct: 470 NLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVADAW 516
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 39/275 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A LV + + P ST LM V ++ + ++L S F + + L+
Sbjct: 304 AFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLY 363
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
Y R GC +E + D++ CR DL+P V Y+ I G L+ KEM +G
Sbjct: 364 GYCRTGCISEAFLLFDELKCR--DLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGL 421
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
D T + + G ++ + + +G++ F Y ++GE
Sbjct: 422 FPDIFTYTILVNGCFKLGYVSMARGFFNEML-------SKGLKPDRFAYNTR----IVGE 470
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
+ A S+Q E M AGF PD+ T+N+ A
Sbjct: 471 ---------------------MKIADTSVAFSMQEE---MLAAGFPPDVITYNVFVHALC 506
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ F + LE+M + + PD VTY +++ ++
Sbjct: 507 QQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFV 541
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 53/275 (19%), Positives = 110/275 (40%), Gaps = 48/275 (17%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY---GRIGCF 130
GLLPD ++ + + +A+ V+ + +V + ++D+Y GR+
Sbjct: 175 GLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQA 234
Query: 131 NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
E++S + + C D+ Y+ ++ K+G+LE + ++EM++ G +V + T N
Sbjct: 235 LELLSEMQERGCYPNDV---TYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPL 291
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
I + + G E +F ++E + R+
Sbjct: 292 INGFCQKGLFVE-----------------------AFDLVEEM-------------VNRR 315
Query: 251 DLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
L +N L+ ++ ++ F M ++ F PD+ +FN + R +
Sbjct: 316 AFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAF 375
Query: 310 LSLEHMKHESVGPDLVTYGCVVD-----AYLDKRL 339
L + +K + P ++TY ++ YLD L
Sbjct: 376 LLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAAL 410
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSS 108
++ G+ K +A + + +KS+GL+PD+ T +++ LC A V EA ++EEL S+
Sbjct: 279 IDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAER--VDEAVELFEELDSN 336
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V V + ++ YG +G FNE S++++ + +P V Y+ ++C G++G++E
Sbjct: 337 KSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQ--KRKGCIPSVIAYNCILTCLGRKGKVE 394
Query: 167 LMENTLKEM 175
L+ M
Sbjct: 395 EALRILEAM 403
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 69/337 (20%), Positives = 133/337 (39%), Gaps = 53/337 (15%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +V + +K A ++ T++ P S L+ + + ++
Sbjct: 170 CIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQ 229
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR--NADLLPEVYSRAISCFGKQGQ 164
+ ++V + + L+ + R G + +S++D++ NADL+ +Y+ I CFGK G+
Sbjct: 230 EIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLV--LYNVCIDCFGKVGK 287
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSR---------------------------- 196
+++ E+ S+G D T + I +
Sbjct: 288 VDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNT 347
Query: 197 ----FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
+GS+ + AY L+R + + A + + + E LR + + D
Sbjct: 348 MIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDA 407
Query: 253 GNLL--WNLL--LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI---RAVAFSRMSMF 305
L +N+L +L AG + ++ M+ EAG P++ T NI R R+
Sbjct: 408 APNLTSYNILIDMLCKAGELEAALKVQDSMK--EAGLFPNIITVNIMIDRLCKAQRLDEA 465
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
+ L L+ H+ PD VT+ ++D LGR+
Sbjct: 466 CSIFLGLD---HKVCTPDSVTFCSLIDG-----LGRH 494
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 113/288 (39%), Gaps = 43/288 (14%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLS 107
L++ L + + A ++ +++K GL P+ T+ ++ LC A + EA ++ L
Sbjct: 417 LIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQR--LDEACSIFLGLDH 474
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
L+D GR G N+ + +++ VY+ I F K G+ E
Sbjct: 475 KVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKED 534
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY--GRLKRSRHLIDKEGIRAV 225
KEM+ RG S D N + M+ + G +++ R L E I+A
Sbjct: 535 GHKIYKEMMHRGCSPDLMLLNNY------------MDCVFKAGEIEKGRALF--EEIKAQ 580
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
T DV + L+ L+ G F K + F M E G
Sbjct: 581 GLT--------------PDV----RSYSILIHGLV----KGGFS-KDTYKLFYEMKEQGL 617
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
H D +NI F + + LE MK + + P +VTYG V+D
Sbjct: 618 HLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDG 665
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 115/275 (41%), Gaps = 14/275 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
++L +K +GL D ++ + +G V +A + EE+ + +V ++D
Sbjct: 605 TYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVID 664
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+I +E + ++ + DL VYS I FGK G+++ L+E++ +G +
Sbjct: 665 GLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 724
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLG 239
++ T N + + + E + +K + ++ + K RKF F+
Sbjct: 725 NTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFW 784
Query: 240 EFLRDVGLGRKDLGNLLWNLLL--LSYAGN-FKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
+ ++ GL + + ++ L+ GN + K L F R +G PD +N
Sbjct: 785 QEMQKQGLKP---NTITYTTMISGLARVGNVLEAKDL---FERFKSSGGIPDSACYNAMI 838
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
S + D ++ E + + G + + CVV
Sbjct: 839 EGLSNANKAMDAYILFEETRLK--GCRIYSKTCVV 871
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 55/311 (17%), Positives = 115/311 (36%), Gaps = 30/311 (9%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
SL+ + + + H++ + G PD L M C G + + + ++EE+ +
Sbjct: 520 TSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKA 579
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
V+ S L+ + G + + ++ + L Y+ I F K G++
Sbjct: 580 QGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNK 639
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
L+EM ++G T +GS+ + RL + L ++ +AV
Sbjct: 640 AYQLLEEMKTKGLQPTVVT----------YGSVIDGLAKIDRLDEAYMLFEEAKSKAVDL 689
Query: 228 TYLK--------------ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
+ + + +L E ++ GL WN LL + ++
Sbjct: 690 NVVVYSSLIDGFGKVGRIDEAYLILEELMQK-GLTP---NTYTWNCLLDALVKAEEIDEA 745
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
F M P+ T++I ++ F + + M+ + + P+ +TY ++
Sbjct: 746 LVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISG 805
Query: 334 YLDKRLGRNLD 344
R+G L+
Sbjct: 806 L--ARVGNVLE 814
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 59/305 (19%), Positives = 125/305 (40%), Gaps = 28/305 (9%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
SL++ LGR K + A+ L + G P+ +L+ + G + +++E++
Sbjct: 485 CSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMH 544
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQGQL 165
+ +L++ MD + G + ++ +++ + L P+V S +I G K G
Sbjct: 545 RGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQG--LTPDVRSYSILIHGLVKGGFS 602
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ EM +G +D+ N I + + G + + AY L+ + +G++
Sbjct: 603 KDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNK---AYQLLEEMK----TKGLQPT 655
Query: 226 SFTY------------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
TY L E +ML E + + DL ++++ L+ + ++
Sbjct: 656 VVTYGSVIDGLAKIDRLDEA--YMLFEEAKSKAV---DLNVVVYSSLIDGFGKVGRIDEA 710
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + G P+ T+N A + + + ++MK+ P+ VTY +V+
Sbjct: 711 YLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNG 770
Query: 334 YLDKR 338
R
Sbjct: 771 LCKVR 775
>gi|414865591|tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea mays]
Length = 838
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 122/286 (42%), Gaps = 32/286 (11%)
Query: 64 HQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123
++V T E + D TL +L+ CY N G +A V + + ++V VL+ L+ A
Sbjct: 195 QEMVVTCGDESV--DRYTLTSLLQCYCNAGRPEDASAVLQRMSKRAWV-DEHVLTMLIVA 251
Query: 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
Y + G + + ++ ++ + + S + +QG++++ N +M S GFSVD
Sbjct: 252 YSKWGKVEDAVELLGRMEALDMRPNEKTLSVLVHGLARQGRVDVAMNMFGKMASYGFSVD 311
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
A + I + + + +KR R D ++ + + ++ F +G F+
Sbjct: 312 LAMYSVLIEGLCHGNEMGKAVKLFEDMKRDRITPDVRLLKKIIEAFCRQGDFSTVGPFIN 371
Query: 244 DVGLGRKD-LGNLLWNLLL--LSYAGNFK-----MKSLQREFMRMSE---AGFH------ 286
+ + K LL+N++L L G + + S+ R R+S+ G H
Sbjct: 372 ENAVHLKPGSAVLLYNVILDGLINHGEVEAAYQLLSSMVRGDQRVSDDDTVGVHIFVITE 431
Query: 287 ---PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
P+ +FNI ++ DL L+L D+V GC
Sbjct: 432 DVKPNSDSFNIVVCGLCKVKKL-DLALALTK--------DMVGLGC 468
>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
Length = 1143
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 120/306 (39%), Gaps = 21/306 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A LV ++ GL D+ + L+ Y+ G V +A + L + + ++
Sbjct: 811 AAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGIPLDIVAYNTIIK 870
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
A R G + I ++ N L P + Y IS F K G+ E K++ S GF
Sbjct: 871 ADLRAGRLKKAIDTYSSLT--NLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGF 928
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA--VSF-----TYLKER 233
D + + Y++ G + +K G+R VS+ Y +
Sbjct: 929 QPDEKVYSQMMNCYAKSGMYEHAADLFEAMKL-------RGLRPHEVSYNNLIDAYARAG 981
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+F + L ++ ++ + LL+ +YA K + RM A P + +N
Sbjct: 982 QFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHYN 1041
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLD 353
+AFSR + S M+ + PD+V+ ++ L+ G + GLS
Sbjct: 1042 EVMLAFSRARLPSQAMESYLKMERSGIQPDVVSSRTMIRILLE---GSMFEEGLSLYKKT 1098
Query: 354 DSPVVS 359
++ +VS
Sbjct: 1099 EAKLVS 1104
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/247 (19%), Positives = 96/247 (38%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ GR K+ LA + + L PD ++L YAN E ++E ++S
Sbjct: 282 LLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMYEAMMSRG 341
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V S + ++ + + + + + + +L P Y+ I+ + K G+ E
Sbjct: 342 IVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEAL 401
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+ M+ G+ DS N + + G E + ++R K +
Sbjct: 402 EVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHIC 461
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K KF + D+ + R + +++ ++ Y ++ F M+E D+
Sbjct: 462 EKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDV 521
Query: 290 TTFNIRA 296
TF++ A
Sbjct: 522 KTFSVMA 528
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/334 (18%), Positives = 118/334 (35%), Gaps = 73/334 (21%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
S G++P + T +++ + +A ++WE+L+ S LS + ++ Y ++G F
Sbjct: 339 SRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFE 398
Query: 132 EIISIIDQVSCRNADLLPE--VYSRAISCFGKQG-------------------------- 163
E + + + + A P+ +Y+ + GK G
Sbjct: 399 EALEVFE--AMLGAGYYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYAT 456
Query: 164 ---------QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
+ EL + +M + VD + I Y + G E E + + R
Sbjct: 457 MLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNELR 516
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--AGNFK--- 269
L+D + ++ LK K+ + + ++ +L + W LL Y AGN +
Sbjct: 517 LLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERAT 576
Query: 270 -------------------MKSLQREF----------MRMSEAGFHPDLTTFNIRAVAFS 300
M SL EF ++ + PD F +
Sbjct: 577 KTFKTLVESGIADLMAYNDMLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYC 636
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+M L M+ + PD +T G +++AY
Sbjct: 637 NANMVAAAEEVLRQMREKGFTPDHITQGILINAY 670
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 109/271 (40%), Gaps = 23/271 (8%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
E D++ L + + G V A+++ + F + L L+ AYG+ G +
Sbjct: 721 ESFTLDSAAYNQLTINFLKAGQVPPAEMLHSRMQDKGFDVEDSTLGHLIAAYGKAGRYEV 780
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+ + ++ N VYS + QLE +++M G DS + +
Sbjct: 781 LTKLKPELPRNNF-----VYSSMVGALINCNQLEKAAGLVEKMRQIGLKCDSVLVSILLN 835
Query: 193 YYSRFGSLTEMETAYGRLKR---------SRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
YS+ G L E A + R + + I K +RA +K L
Sbjct: 836 AYSKAG-LVEDADALIHMARGDGIPLDIVAYNTIIKADLRAGRL-----KKAIDTYSSLT 889
Query: 244 DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
++GL R L ++ ++ +A + + + ++ F + AGF PD ++ +++
Sbjct: 890 NLGL-RPSLQT--YDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSG 946
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M+ E MK + P V+Y ++DAY
Sbjct: 947 MYEHAADLFEAMKLRGLRPHEVSYNNLIDAY 977
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 62/326 (19%), Positives = 125/326 (38%), Gaps = 14/326 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L +KS + PD ++ Y N V A+ V ++ F L++
Sbjct: 609 AKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLRQMREKGFTPDHITQGILIN 668
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENT--LKEMVSRGF 180
AYG E ++ + S + + SR C + L + L V F
Sbjct: 669 AYGEANRIEEAAGLL-EASAKEDESEAAAISRIYLCL----KFRLFDKATLLLHRVLESF 723
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
++DSA N I + + G + E + R++ ++ + + Y K ++ +L +
Sbjct: 724 TLDSAAYNQLTINFLKAGQVPPAEMLHSRMQDKGFDVEDSTLGHLIAAYGKAGRYEVLTK 783
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
++ N +++ ++ + +++ +M + G D +I A+S
Sbjct: 784 LKPEL-----PRNNFVYSSMVGALINCNQLEKAAGLVEKMRQIGLKCDSVLVSILLNAYS 838
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPVVS 359
+ + D + + + + D+V Y ++ A L RL + +D S NL P +
Sbjct: 839 KAGLVEDADALIHMARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQ 898
Query: 360 TDPYVFEAFGK-GDFHSSSEAFLEFK 384
T + F K G + + F + K
Sbjct: 899 TYDTMISVFAKSGRTRDAEKMFKDLK 924
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 76/166 (45%), Gaps = 1/166 (0%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A+++ + K LA + + ++ + D +++ Y G EA+ +++E+
Sbjct: 455 ATMLHICEKADKFELAASIFSDMQMKRCPVDEVVYTSVISIYGKAGLYDEAEKLFQEMNE 514
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
++ V+ S + + + G +NE + +++++ + +L + + C+ K G +E
Sbjct: 515 LRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVER 574
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
T K +V G + D N + Y+ F L + + + +LK S
Sbjct: 575 ATKTFKTLVESGIA-DLMAYNDMLSLYAEFDMLEDAKLLFQQLKSS 619
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 20/154 (12%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VYS + +G+ Q+ L E +EM+ + D + I+ Y+ EM T Y
Sbjct: 278 VYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMY--- 334
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ GI S TY E L D L +DL L L+YA M
Sbjct: 335 ----EAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESVELSPLAYA---LM 387
Query: 271 KSLQREFMRMSE----------AGFHPDLTTFNI 294
++ R+ R E AG++PD +N+
Sbjct: 388 ITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNM 421
>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
Length = 1494
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 121/281 (43%), Gaps = 11/281 (3%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTL-CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
P AH L++ + +GLL D+ ++ ++ Y +A+ + L ++ +V +
Sbjct: 759 PETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWN 818
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+ AY GC+ +I + + + + + G+L+ + ++E+
Sbjct: 819 ALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDM 878
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF--- 235
GF + ++ + ++ G++ E++ Y +K + + R + K ++
Sbjct: 879 GFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDV 938
Query: 236 -FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
M+ E +V + DL +WN +L Y G K + + + EAG PD T+N
Sbjct: 939 EAMVSEM--EVAXFKPDLS--IWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNT 994
Query: 295 RAVAFSRMSMFWDLHLSLEH-MKHESVGPDLVTYGCVVDAY 334
+ + R + LSL H M+ + P L TY ++ A+
Sbjct: 995 LILMYCR-DRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAF 1034
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 107/277 (38%), Gaps = 39/277 (14%)
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
+LA +L+N V+ G+ PD T L+ + + EA V+ ++++ + + +
Sbjct: 308 NLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAM 367
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSR 178
+ YGR G E + + + LP+ Y+ + F ++G ++ ++ ++MV
Sbjct: 368 ISVYGRCGMSREAGRLFKDLESKG--FLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKM 425
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF D T N I Y + G Y +K S D AV++T L +
Sbjct: 426 GFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPD-----AVTYTVLID------ 474
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
LG+ ++ +K M A P L TF+
Sbjct: 475 -------SLGKANM-----------------IKEAAEVMSEMLNAXVKPTLRTFSALICG 510
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+++ + + + M + PD + Y ++D L
Sbjct: 511 YAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILL 547
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 116/308 (37%), Gaps = 35/308 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + NT+ +G P ++ LM +G + E VV +EL F +S ++ ++D
Sbjct: 833 ARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLD 892
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A+ G E+ I + +Y I K ++ +E + EM F
Sbjct: 893 AFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKP 952
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLG 239
D + N+ + Y+ G + Y ++ + D++ + Y ++R+ L
Sbjct: 953 DLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLM 1012
Query: 240 EFLRDVGL-----GRKDLGNLLWNLLLLSYAGNF------KMKSLQREFMR--------- 279
+R VGL K L + L ++ A K L R F
Sbjct: 1013 HEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRNS 1072
Query: 280 ------------MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
M EAG P + T ++ V++S + L+++K E + + Y
Sbjct: 1073 GNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPY 1132
Query: 328 GCVVDAYL 335
V+DAYL
Sbjct: 1133 SSVIDAYL 1140
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 79/181 (43%), Gaps = 4/181 (2%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
++ +R Q +++ GR A +L ++S+G LPD T +L+ +A G
Sbjct: 352 MVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGN 411
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID--QVSCRNADLLPEVY 152
V + + + E+++ F + ++ YG+ G + + ++S R+ D + Y
Sbjct: 412 VDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAV--TY 469
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ I GK ++ + EM++ T +A I Y++ G E E + + R
Sbjct: 470 TVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLR 529
Query: 213 S 213
S
Sbjct: 530 S 530
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 94/267 (35%), Gaps = 44/267 (16%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL--ELMEN 170
+VQV + +M Y R G F ++ ++D + R + ++ I+ K G + L
Sbjct: 253 TVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIE 312
Query: 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230
L E+ G D T N I SR +L E Y + R D
Sbjct: 313 LLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPD------------ 360
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLLW--NLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
LW N ++ Y + R F + GF PD
Sbjct: 361 -------------------------LWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPD 395
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGL- 347
T+N AF+R + E M G D +TY ++ Y KR +L F L
Sbjct: 396 AVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMY-GKRGQHDLAFQLY 454
Query: 348 SKMNLDD-SPVVSTDPYVFEAFGKGDF 373
S M L SP T + ++ GK +
Sbjct: 455 SDMKLSGRSPDAVTYTVLIDSLGKANM 481
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 151/377 (40%), Gaps = 50/377 (13%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A QL+ + + PD T AL+ + G V A+ ++ E+L + + S ++D
Sbjct: 134 AEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMID 193
Query: 123 AYGR----------------IGCFNEIISI---IDQVSCRNADLLPEVYSRAISCFGKQG 163
+ + GC +II++ ID CR L I F + G
Sbjct: 194 GFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDG-CCRAKRHL-------IHGFCQVG 245
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+ + ++ +EM+S G S D T N + G L + + ++S+ +D
Sbjct: 246 NVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCN 305
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA--GNFKMKSLQRE--FMR 279
+ K K + + + + + +N+L+ + GNF L+ E ++
Sbjct: 306 IIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNF----LRAEDIYLE 361
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
M G P T+N F + + + ++ M E PD+VT+ ++ Y +
Sbjct: 362 MLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYC--KA 419
Query: 340 GRNLDFGL---SKMNLDDSPVVSTDPY--VFEAFGK-GDFHSSSEAFLEFKRQ----RKW 389
GR +D GL S+M V T Y + F K GD + + + F E
Sbjct: 420 GR-VDDGLELFSEM-CQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTI 477
Query: 390 TYRKLIA-VYLKKQLRR 405
T+R ++A + K +L++
Sbjct: 478 TFRSMLAGLCTKAELQK 494
>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 673
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 118/278 (42%), Gaps = 16/278 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L T+ S+G PD T L+ G + A + E+ F S+ + L+
Sbjct: 327 AAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLH 386
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
++ R G ++ I ++++ +S + + E Y+ I K +++ ++EM S+G+
Sbjct: 387 SFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKP 446
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T N I + + E E + L EG+ A + TY +
Sbjct: 447 DICTYNTIIYHLCNNNQMEEAEYLFENLLH-------EGVVANAITYNTLIHALLRNGSW 499
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKM----KSLQREFM---RMSEAGFHPDLTTFNIR 295
+D D+ +L ++SY G K ++ R M M+E G P+ ++N+
Sbjct: 500 QDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLL 559
Query: 296 AVAFSRMSMFWD-LHLSLEHMKHESVGPDLVTYGCVVD 332
+ D L LS E + E + PD+VTY +++
Sbjct: 560 ISELCKTRRVRDALELSKEMLNQE-LTPDIVTYNTLIN 596
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 95/245 (38%), Gaps = 25/245 (10%)
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A R+G +E ++++ ++ +Y I QG + L EM G S
Sbjct: 181 ALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSA 240
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV---SFTYLKERKFFMLG 239
D T F + GRL+ + L+D+ IR + TY K L
Sbjct: 241 DVNT----------FNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLA 290
Query: 240 EFLRDVG--LGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
+ + LGR +L +L+N ++ + K+K + M G PD T++I
Sbjct: 291 SQVEEARTMLGRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILI 350
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNL--------DFGLS 348
++ L M+ + P +VTY ++ ++ + N+ D GLS
Sbjct: 351 HGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLS 410
Query: 349 KMNLD 353
MNL+
Sbjct: 411 -MNLE 414
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 110/275 (40%), Gaps = 14/275 (5%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L N + G PD T ++ G+++ A + E+++ F +V + L++ +
Sbjct: 364 LYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFC 423
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ G E I++ +S + L Y+ I K G +E EM +G D
Sbjct: 424 KQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIY 483
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR-- 243
T N+ I + + E + Y H + EG+ A + TY F++ + ++
Sbjct: 484 TFNSLINGLCKNHKMEEALSLY-------HDMFLEGVIANTVTYNTLVHAFLMRDSIQQA 536
Query: 244 ----DVGLGRK-DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
D L R L N+ +N L+ + ++ F M G P + + NI
Sbjct: 537 FKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISG 596
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
R D L+ M H + PD+VTY +++
Sbjct: 597 LCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLING 631
>gi|326527817|dbj|BAJ88981.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 136/330 (41%), Gaps = 51/330 (15%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E L + LA +L+ + +G+ + T L+ YA G + ++ V E+
Sbjct: 127 ALLEGLLARAHLRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRW 186
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
L S L+ Y G + + +I ++ +L ++Y+ I FGK GQL
Sbjct: 187 GIRLDTAGYSTLVRLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADA 246
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT---------EMETAYGRLKRSRHLIDK 219
++M +G D T NA I ++ R G++ + E Y K +I+K
Sbjct: 247 RKMFEKMRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINK 306
Query: 220 EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL-LLSYAGNFK-----MKSL 273
G + + LKE L + +R+ G K+ G + L+ + G+F+ + +L
Sbjct: 307 LGEQG-KWDELKE-----LFDKMRNRGF--KESGAIYAVLVDIYGQYGHFRDAQECVAAL 358
Query: 274 QREFMRMSEA----------------------------GFHPDLTTFNIRAVAFSRMSMF 305
+ E +++S + G P+L N+ AFS
Sbjct: 359 KAENLQLSPSIFCVLANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRH 418
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ +H+K + PD+VTY ++ A++
Sbjct: 419 LEAQAVFQHIKDSGMSPDVVTYTTLMKAFM 448
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/295 (17%), Positives = 117/295 (39%), Gaps = 4/295 (1%)
Query: 29 GDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC 88
G++ R IR G+ L D G KK A L+ ++ G+ D L+
Sbjct: 181 GEMKRWGIRL-DTAGYSTLVRLYRDSGMWKK---ATDLIMEMQEVGVELDVKIYNGLIDT 236
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ G + +A+ ++E++ ++ + L+ + R+G + + +
Sbjct: 237 FGKYGQLADARKMFEKMRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPD 296
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
P+++ I+ G+QG+ + ++ +M +RGF A + Y ++G + +
Sbjct: 297 PKIFITIINKLGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVA 356
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
LK + ++ Y ++ L+ + + ++ NLL+ +++
Sbjct: 357 ALKAENLQLSPSIFCVLANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAG 416
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+ Q F + ++G PD+ T+ AF R+ + + M+ PD
Sbjct: 417 RHLEAQAVFQHIKDSGMSPDVVTYTTLMKAFMRVKRYEKVSEVYSEMERAGCTPD 471
>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
Length = 800
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 138/348 (39%), Gaps = 59/348 (16%)
Query: 37 RYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
R R+Q G C L++ L +++ A +L + + E DN + C L+
Sbjct: 368 RLREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLE 427
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV- 151
G V E + E + + V + L+D Y R G + ++ ++ + LP +
Sbjct: 428 GRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKG--FLPTLV 485
Query: 152 -YSRAISCFGKQGQLELMENTLKEMVSRGFSVD---------------SATGNAFIIYYS 195
Y I+C GK+G LE + + EM RG S + SAT A +I
Sbjct: 486 TYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSAT-QAMVILKQ 544
Query: 196 RFGSLTEMETAY-----------GRLKRSRHLIDKEGIR------AVSFTYLKERKFFML 238
F S + + G ++++ H + +E IR +S+T L F M
Sbjct: 545 MFASGCDPDIITFNTLITGLCHEGHVRKAEHFL-REAIRRELNPNQLSYTPLIH-GFCMR 602
Query: 239 GEFLRDVGL-----GRK------DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
GE + L GR G L+ L++ AG + RE +M+E P
Sbjct: 603 GELMAASDLLMEMMGRGHTPDVVTFGALIHGLVV---AGKVSEALIVRE--KMTERQVFP 657
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
D+ +N+ + M LE M ++V PD Y ++D ++
Sbjct: 658 DVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFI 705
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 121/318 (38%), Gaps = 49/318 (15%)
Query: 27 KNGDLARKIIRYRKQE--GF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD-- 78
+ GD+ R ++ + E GF V SL+ LG+K L ++ GL P+
Sbjct: 461 RRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQ 520
Query: 79 --NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
NS + AL C++ +A V+ +++ +S + + L+ G +
Sbjct: 521 IYNSVIDALCKCWS----ATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHF 576
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ + R + Y+ I F +G+L + L EM+ RG + D T
Sbjct: 577 LREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVT---------- 626
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
FG+L G++ S LI +E + ER+ F DV +
Sbjct: 627 FGALIHGLVVAGKV--SEALIVRE--------KMTERQVF------PDVNI--------- 661
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+N+L+ + + + M E PD + F R D E M+
Sbjct: 662 YNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFME 721
Query: 317 HESVGPDLVTYGCVVDAY 334
H+ V PD+V+ ++ Y
Sbjct: 722 HKGVRPDIVSCNAMIKGY 739
>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
Length = 583
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/299 (19%), Positives = 127/299 (42%), Gaps = 26/299 (8%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ R+K +++ +++EG+ T L+ + + + + ++ E+ ++
Sbjct: 217 SLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKAN 276
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ V V + + +++AY R G ++D+ + Y I+ F K GQ+E
Sbjct: 277 NVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAA 336
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
E L +M +G ++ N I Y R G + + + + ++K G+ +T
Sbjct: 337 EMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDA-------LKIKAAMEKMGVELDIYT 389
Query: 229 Y------------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLS-YAGNFKMKSLQR 275
Y L E K + + ++G+ + N + L+S + + M +R
Sbjct: 390 YNTLACGLCRVNRLDEAKTLL--HIMIEMGV----VPNYVTYTTLISIHCKDGDMVEARR 443
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F M+E G P + T+N+ +++ + + M+ + PD+ TY +V +
Sbjct: 444 LFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGH 502
>gi|147819856|emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
Length = 494
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 130/317 (41%), Gaps = 11/317 (3%)
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
N T AL+ CY V +A ++++L +FV S ++++ Y R+G ++ S++
Sbjct: 129 NKTYGALLNCYCKENMVDKAVELFKKLKELNFVSSALSYNNMISLYLRVGQPEKVPSLVH 188
Query: 139 QVSCRN--ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
++ ++ ADL Y+ ++ + E +E L++M RG D T Y
Sbjct: 189 EMEEKDIPADLY--TYNLLMNSYASVKDFEAVEQVLEKMKKRGVERDWFTYGNLANIYVD 246
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
G + A +L+++++L D E R + Y + + + L + N
Sbjct: 247 AGHTKKANYALQKLEQNKNLHDPEAFRMLINLYARTSNLEGVNRAWESLKLAHPKINNKS 306
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+ ++LL+ + + L++ F D+ N+ ++ M + +L E +
Sbjct: 307 YLIMLLALSKLGDVAGLEKCFKEWESGCSTYDVRLSNVMLESYLNREMIEEANLLSESIA 366
Query: 317 HESVGPDLVTYGCVVDAYLDKR----LGRNLDFGLSKMNLDDS---PVVSTDPYVFEAFG 369
L T + YL K + LD G SK + +++ P T E F
Sbjct: 367 KRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMGASKADPENNKWFPTEETITMFLEYFE 426
Query: 370 KGDFHSSSEAFLEFKRQ 386
+ S+E F E R+
Sbjct: 427 EVKDVDSAEKFCETMRK 443
>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 125/316 (39%), Gaps = 3/316 (0%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G ++K + A++++ VK GL P + T +L++ + + EA+ + E++ ++
Sbjct: 373 GLEEKAYKAYRMM--VKF-GLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINK 429
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKE 174
+ L+D Y R+G S+ +++ R +S I+ G ++ + +
Sbjct: 430 AAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQ 489
Query: 175 MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234
M +GF ++ N+ I + G L E + R L D + KE +
Sbjct: 490 MSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGR 549
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
+ R++ + +N L+ Y F S +M G+ PD+TT+NI
Sbjct: 550 MKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNI 609
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD 354
R + LE + V PD VTY V++ L R + + +
Sbjct: 610 RLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMNGVCTDVLERAMIVTAKLLKMAF 669
Query: 355 SPVVSTDPYVFEAFGK 370
P V T + F K
Sbjct: 670 VPNVVTANLLLSHFCK 685
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 125/313 (39%), Gaps = 51/313 (16%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L++ + ++ L+PD + L+ Y G + EA +++ EL S SV + L+D
Sbjct: 326 ARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLID 385
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQL----ELMENTL---- 172
R+G + + + D++ D P+V++ + F K G L EL + L
Sbjct: 386 GLCRLGDLDVAMRLKDEMIKHGPD--PDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGL 443
Query: 173 ---------------------------KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+EM++RGF D T N FI + G+L E
Sbjct: 444 QPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASE 503
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN------LLWNL 259
++ + + D ++ +L M G + L + L + + +
Sbjct: 504 LVKKMLYNGLVPDHVTYTSIIHAHL------MAGHLRKARALFLEMLSKGIFPSVVTYTV 557
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
L+ SYA ++K F M E G HP++ T+N ++ + M+ +
Sbjct: 558 LIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKG 617
Query: 320 VGPDLVTYGCVVD 332
+ P+ TY +++
Sbjct: 618 ISPNKYTYTILIN 630
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 73/347 (21%), Positives = 140/347 (40%), Gaps = 39/347 (11%)
Query: 28 NGDLARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC 83
N D+AR++ + G V ++++ +K A QL+ +++ G P++ T
Sbjct: 182 NIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYN 241
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
L+ +++G + +A+ + +++L +SV L+ Y G E + +++ R
Sbjct: 242 VLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSR 301
Query: 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
A Y+ + K G++ L MV++ D + N I Y+R G++ E
Sbjct: 302 GAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEA 361
Query: 204 ETAYGRLK-RS--------RHLID---KEGIRAVSFTYLKER-------KFFMLGEFLRD 244
+ L+ RS LID + G V+ E F F+R
Sbjct: 362 FLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRG 421
Query: 245 -VGLGRKDLGNLLWNLLL--------LSY----AGNFKMKSLQREFMRMSEA---GFHPD 288
+G + L++ +L +Y G K+ + F E GF PD
Sbjct: 422 FCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPD 481
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
L T+N+ ++ + ++ M + + PD VTY ++ A+L
Sbjct: 482 LITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHL 528
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/305 (17%), Positives = 114/305 (37%), Gaps = 47/305 (15%)
Query: 72 SEGLLPDNSTLC--ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
S+GLLPD C L L + + A+ V+ ++ +V + ++D++ + G
Sbjct: 159 SKGLLPDVKN-CNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGM 217
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
E + ++ Q+ Y+ ++ G++E + +++M+ G V T +
Sbjct: 218 VQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDP 277
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
I Y G + E + ++ + + V
Sbjct: 278 LIRGYCEKGQIEEAS------RLGEEMLSRGAVPTV------------------------ 307
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ +N ++ ++ ++ M PDL ++N ++R+ +
Sbjct: 308 -----VTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAF 362
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPV---VSTDPYVFE 366
L +++ S+ P +VTY ++D RLG +LD M L D + D + F
Sbjct: 363 LLFAELRYRSLAPSVVTYNTLIDGLC--RLG-DLDVA---MRLKDEMIKHGPDPDVFTFT 416
Query: 367 AFGKG 371
F +G
Sbjct: 417 TFVRG 421
>gi|356532365|ref|XP_003534744.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 705
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L R KK A + + S G+ PD T L+ YA + +A V++E+ +
Sbjct: 309 TLLGSLFRSKKSWQAKNVYKEMISNGVSPDFITYATLLRIYAGAQYREDALSVYKEMKGN 368
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV----SCRNADLLPEVYSRAISCFGKQGQ 164
++V + + L+D +GC E + I + + +C+ L +S I+ + G+
Sbjct: 369 GMDMTVDLYNRLLDMCADVGCIEEAVEIFEDMKSSGTCQPDSL---TFSSLITVYSCNGK 425
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
+ E L EM+ GF IY LT + YGR K++ ++
Sbjct: 426 VSEAEGMLNEMIQSGFQP--------TIYV-----LTSLVQCYGRAKQTDDVV 465
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 63 AHQLVNTVKSEGLL-PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
A ++ +KS G PD+ T +L+ Y+ NG V EA+ + E++ S F ++ VL+ L+
Sbjct: 393 AVEIFEDMKSSGTCQPDSLTFSSLITVYSCNGKVSEAEGMLNEMIQSGFQPTIYVLTSLV 452
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
YGR ++++ I Q+ + ++P+VY
Sbjct: 453 QCYGRAKQTDDVVKIFKQL--LDLGIVPDVY 481
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 52/278 (18%), Positives = 105/278 (37%), Gaps = 9/278 (3%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
P A + + S G PD T A++ YA V A ++ + + L S
Sbjct: 215 PDKAVEWFKKMPSFGCEPDAMTCSAMVSAYAQTNNVDMALSLYGRAKAEKWSLDASTFST 274
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L+ YG +G + E + I ++ Y+ + + + +N KEM+S G
Sbjct: 275 LIKMYGVLGNYVECLRIFGEMKVLGVKPTVVTYNTLLGSLFRSKKSWQAKNVYKEMISNG 334
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLK-----RSRHLIDKEGIRAVSFTYLKERK 234
S D T + Y+ + + Y +K + L ++ ++E
Sbjct: 335 VSPDFITYATLLRIYAGAQYREDALSVYKEMKGNGMDMTVDLYNRLLDMCADVGCIEEA- 393
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
+ E ++ G + D +L ++ L+ Y+ N K+ + M ++GF P +
Sbjct: 394 -VEIFEDMKSSGTCQPD--SLTFSSLITVYSCNGKVSEAEGMLNEMIQSGFQPTIYVLTS 450
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ R D+ + + + PD+ C+++
Sbjct: 451 LVQCYGRAKQTDDVVKIFKQLLDLGIVPDVYFCCCLLN 488
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 118/281 (41%), Gaps = 47/281 (16%)
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAIS 157
+++++ + ++V + + L+ + R G + +S++D++ ++ L P+V Y+ I
Sbjct: 221 TLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEM--KSNSLEPDVVLYNVCID 278
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
CFGK G++++ EM + G +D T + I + L E + + +++ +
Sbjct: 279 CFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVP 338
Query: 218 DKEGIRAVSFTYLKERKF---FMLGEFLRDVG--------------LGRKD--------- 251
+ Y KF + L E R G LGRK
Sbjct: 339 CAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKF 398
Query: 252 -------LGNL-LWNLL--LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ NL +N++ +L AG + + R+ M+ +AG P++ T NI +
Sbjct: 399 EEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMK--DAGLFPNVITVNIMVDRLCK 456
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
D E + H++ PD VTY +++ LGR+
Sbjct: 457 AQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG-----LGRH 492
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 55/294 (18%), Positives = 124/294 (42%), Gaps = 20/294 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V+ L + ++ A + + + PD T C+L+ +G V EA ++E++L ++
Sbjct: 450 MVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDAN 509
Query: 110 FVLSVQVLSDLMDAYGRIG-------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162
+ + V + L+ + + G +NE++ ++ C LL Y + C K
Sbjct: 510 QIPNAVVYTSLIRNFFKCGRKEDGHKIYNEML----RLGCSPDLLLLNTY---MDCVFKA 562
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G++E +E+ + GF D+ + I + G E + +K ++D
Sbjct: 563 GEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAY 622
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
V + K K + L ++ + + + ++ A K+ L +M E
Sbjct: 623 NTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLA---KIDRLDEAYMLFEE 679
Query: 283 A---GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
A G ++ ++ F ++ + +L +E + + + P++ T+ C++DA
Sbjct: 680 AKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDA 733
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 39/214 (18%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++++ + K + A+QL+ +K++G P T +++ A + EA +++EE S
Sbjct: 624 TVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 683
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY---------------S 153
L+V + S L+D +G++G +E I++++ L P VY S
Sbjct: 684 GIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL--MQKGLTPNVYTWNCLLDALVKAEEIS 741
Query: 154 RAISCFGKQGQLELMENTL----------------------KEMVSRGFSVDSATGNAFI 191
A+ CF L+ N + +EM +GF + T I
Sbjct: 742 EALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMI 801
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
++ G++ E +T + + K + D A+
Sbjct: 802 SGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAI 835
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 82/184 (44%), Gaps = 4/184 (2%)
Query: 32 ARKIIRYRKQEGFVDCAS----LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
R + + K GF+ A L+ L + H A++L T+K +G + D ++
Sbjct: 568 GRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVID 627
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ +G V +A + EE+ + +V ++D +I +E + ++ + +L
Sbjct: 628 GFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIEL 687
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
+YS I FGK G+++ ++E++ +G + + T N + + ++E +
Sbjct: 688 NVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCF 747
Query: 208 GRLK 211
+K
Sbjct: 748 QSMK 751
>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 867
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 137/322 (42%), Gaps = 45/322 (13%)
Query: 32 ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A K+ + +EG V SL++ L + K+ A ++ +++ ++G PD + L+
Sbjct: 361 AAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLH 420
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
YA G ++ ++ + + V + L++A+ + G +E + I ++ R +
Sbjct: 421 GYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEM--RGQGV 478
Query: 148 LPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
P V Y+ I+ + G+L L +M+S G ++ ++Y+ SL +
Sbjct: 479 SPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNT------VVYH----SLIQGFC 528
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+G L +++ L+ + + D G+ R ++ ++ ++ S
Sbjct: 529 THGDLIKAKELVSE----------------------MMDQGIPRPNI--TFFSSIIHSLC 564
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
++ + Q F + G PD+ TFN + + L+ M PD+V
Sbjct: 565 NEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVV 624
Query: 326 TYGCVVDAYLDKRLGRNLDFGL 347
TY +++ Y + GR +D GL
Sbjct: 625 TYSTLINGYF--KSGR-IDDGL 643
>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 589
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/294 (19%), Positives = 112/294 (38%), Gaps = 62/294 (21%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS- 113
G+ K +++ +L ++S P+ T AL+ +A G +A+ ++E+L + S
Sbjct: 285 GKASKSYMSWKLFCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHIDSR 344
Query: 114 -------VQVLS---------------DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151
++ S ++DAYGR G ++ ++ +++ + + P +
Sbjct: 345 AGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEM--KRLGIAPTM 402
Query: 152 YSRAI--SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
S + S + + + E +KEM G D+ N+ + Y R G T+ME
Sbjct: 403 KSHMLLLSAYSRARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAE 462
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
++ G D+ +N+L+ Y
Sbjct: 463 MEN--------------------------GPCTADIST---------YNILINIYGKAGF 487
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
++ ++ F+ + E F PD+ T+ R A+SR ++ E M PD
Sbjct: 488 LERIEELFVELKERNFKPDVVTWTSRIGAYSRKKLYVKCLEIFEEMIDSGCAPD 541
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 8/180 (4%)
Query: 32 ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN 91
A +I +++G +D R P+ A ++ + ++ G PD ++ ++ Y
Sbjct: 328 AEEIFEQLQEDGHID--------SRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGR 379
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151
G +A+ V+EE+ +++ L+ AY R + +I+ ++S + V
Sbjct: 380 AGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDVTKCEAIVKEMSENGVEPDTFV 439
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
+ ++ +G+ GQ ME L EM + + D +T N I Y + G L +E + LK
Sbjct: 440 LNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELK 499
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 95/258 (36%), Gaps = 24/258 (9%)
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
L SSF V + L+DAYG+ F E S+ Q+ + Y+ I + G
Sbjct: 159 LRRSSFQPDVICFNLLIDAYGQKFRFKEAESLYVQLLESRCVPTEDTYTLLIKAYCMAGL 218
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFII-YYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+E E L EM + S NA+I R G+ + + R+KR R E
Sbjct: 219 IEKAEAVLIEMQNHHVSPSVTVYNAYIEGLMKRKGNTEQAIDVFQRMKRDRCKPTTETYN 278
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA-------GNFKMKSLQRE 276
+ Y K K +M + ++ + + L+ ++A + LQ +
Sbjct: 279 LMINLYGKASKSYMSWKLFCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQED 338
Query: 277 ----------------FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
F M G PD ++NI A+ R + D E MK +
Sbjct: 339 GHIDSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGI 398
Query: 321 GPDLVTYGCVVDAYLDKR 338
P + ++ ++ AY R
Sbjct: 399 APTMKSHMLLLSAYSRAR 416
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 125/316 (39%), Gaps = 22/316 (6%)
Query: 32 ARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A+K++ ++ G V +L+ L R A ++ GL+PD T A++
Sbjct: 262 AKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIIN 321
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
G +A+ + +E+ + + +V V S L+D + R G +E I+ ++S
Sbjct: 322 GLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQP 381
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y I K G++ LK+M G+ D+ T N I + R E A+
Sbjct: 382 NKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLR---QHNKEEAF 438
Query: 208 GRLKRSRHLIDKEGIRAVSFTY-LKERKFFMLGEFLRDVGLGRKDLGN------LLWNLL 260
L R K GI +TY + +GE R GL + + + ++ L
Sbjct: 439 LLLNEMR----KGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPL 494
Query: 261 LLSYA--GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
+ Y G+F + +M+ PDL +N + S + + + M +
Sbjct: 495 ISGYCREGSFSLAC--ETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEK 552
Query: 319 SVGPDLVTYGCVVDAY 334
P+ TYG ++ Y
Sbjct: 553 GFQPNDFTYGGLIHGY 568
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 121/309 (39%), Gaps = 19/309 (6%)
Query: 28 NGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
+G L + I K FV A L+ R+ LA + + + E L PD +L++
Sbjct: 473 SGLLEQMIADGLKPNAFV-YAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLII 531
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+N G + EA ++E+L F + L+ Y G + ++ Q+ N+ L
Sbjct: 532 GLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQM--LNSGL 589
Query: 148 LPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
P +Y++ + + K LE + +TLK M+ +G D+ + I S M+
Sbjct: 590 NPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDN---RLYGIVIHNLSSSGHMQA 646
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLK-ERKFFMLGEFLRDVGL----GRKDL--GNLLWN 258
A L +I+K G+ S Y F + + VGL +K + G +N
Sbjct: 647 AVSVLS----VIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYN 702
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
L+ + + + + F + G P+ T+ + + D M E
Sbjct: 703 ALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTE 762
Query: 319 SVGPDLVTY 327
V PD Y
Sbjct: 763 GVAPDAFVY 771
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/308 (19%), Positives = 133/308 (43%), Gaps = 25/308 (8%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++++ L + K A + G++PD +L+ + G + +A +++E+L
Sbjct: 630 SAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLH 689
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
+ ++ V + L++ ++G + + D++ DL+P+V YS I + K G L
Sbjct: 690 NGINPNIVVYNTLINGLCKLGEVTKARELFDEI--EEKDLVPDVVTYSTIIDGYCKSGNL 747
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE--------METAYGRLKRSRHLI 217
EM+S+G S D I + G+L + + + G L LI
Sbjct: 748 TEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLI 807
Query: 218 DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQRE 276
D ++ K K E D+ + +K N++ + +L+ +Y M+ ++
Sbjct: 808 D---------SFCKHGKVIEARELFDDM-VDKKLTPNIVTYTILIDAYGKAEMMEEAEQL 857
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
F+ M P+ T+ ++++++ + + + M+ + D + YG + AY
Sbjct: 858 FLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCK 917
Query: 337 KRLGRNLD 344
+ G++L+
Sbjct: 918 E--GKSLE 923
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 106/267 (39%), Gaps = 10/267 (3%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
+GL PD T L+ + EA++++E + SS + + L+D + + G E
Sbjct: 305 KGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEE 364
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+ I D++ R L Y+ I K G++ + EM+ G D+ T N I
Sbjct: 365 ALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLID 424
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK-----ERKFFMLGEFLRDVGL 247
Y + + + +K +R L +V + L ++ +L + +R+
Sbjct: 425 GYLKSHDMAKACELLAEMK-ARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRN--- 480
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
G K ++ L+ +Y + + M G PDL +N + R +
Sbjct: 481 GVKP-NVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEE 539
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ L M + + P+ TYG ++ Y
Sbjct: 540 AKMLLVDMGEKGIKPNAHTYGAFINLY 566
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 114/274 (41%), Gaps = 25/274 (9%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
+GL+PD A++ + NG EA V+ + L + V V + + L+ + + G +
Sbjct: 620 KGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEK 679
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+ D++ + VY+ I+ K G++ E+ + D T + I
Sbjct: 680 ASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIID 739
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-------KERKFFMLGEFLRDV 245
Y + G+LTE K +I K GI + Y KE G + +
Sbjct: 740 GYCKSGNLTE------AFKLFDEMISK-GISPDGYIYCILIDGCGKE------GNLEKAL 786
Query: 246 GL----GRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L +K +G+L +N L+ S+ + K+ + F M + P++ T+ I A+
Sbjct: 787 SLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYG 846
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ M + M+ ++ P+ +TY ++ +Y
Sbjct: 847 KAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSY 880
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/186 (18%), Positives = 78/186 (41%), Gaps = 4/186 (2%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y I+ + K G++++ E K+M+S G ++ I + G+ E + + +
Sbjct: 558 TYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCM 617
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKF-FMLGEFLRDVGLG-RKDLGNLLWNLLLLSYAGNF 268
+ D A+ + K K +G FL+ + G D+ L+N L+ +
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDV--FLYNSLISGFCKEG 675
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
++ + + M G +P++ +N ++ + ++ + + PD+VTY
Sbjct: 676 DIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYS 735
Query: 329 CVVDAY 334
++D Y
Sbjct: 736 TIIDGY 741
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 108/242 (44%), Gaps = 32/242 (13%)
Query: 42 EGFVDCASLVEDLGRKKKPHLAHQLVNTV--KSEGLLPDNSTLCALMLCYANNGFVLEAQ 99
+G++ C L++ G++ A L + KS G L S +L+ + +G V+EA+
Sbjct: 765 DGYIYCI-LIDGCGKEGNLEKALSLFHEAQQKSVGSL---SAFNSLIDSFCKHGKVIEAR 820
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAIS 157
++++++ ++ + L+DAYG+ E + + RN ++P Y+ +
Sbjct: 821 ELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRN--IIPNTLTYTSLLL 878
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
+ + G M + K+M +RG + D+ +G + G+ + L+
Sbjct: 879 SYNQIGNRFKMISLFKDMEARGIACDAIA----------YGVMASAYCKEGKSLEALKLL 928
Query: 218 DK---EGIR-------AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--A 265
+K EGI+ A+ F KE++ + E L ++G L + N LLL + +
Sbjct: 929 NKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKS 988
Query: 266 GN 267
GN
Sbjct: 989 GN 990
>gi|302763321|ref|XP_002965082.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
gi|300167315|gb|EFJ33920.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
Length = 731
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 115/260 (44%), Gaps = 32/260 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + + + +++ VK+ G P ++ +++ Y + G V EA+ V++E+L+S
Sbjct: 478 SLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLAS 537
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
V S L++AY G E +D S + A +P+ VY+ + + G +
Sbjct: 538 GVEADVICYSALLNAYAEAGFAREAQQTLD--SLKAAGFVPDTIVYTSMMKLYSNLGLIA 595
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
E +E +SR S D N + Y + G TE E + ++R K G+ V+
Sbjct: 596 EAEKIYEE-ISR-LSPDVFAANTMLNLYIKSGMFTEAEQLFRAMQRG-----KPGLNEVA 648
Query: 227 FTYLKERKFFMLGEFLRDVGLGRK--DLGNLLWNLLLLSYAGNFKM-------KSLQREF 277
T M+ + R+ G + D+ ++ L++ A F + L RE
Sbjct: 649 CT--------MMLKLYREAGKIEQGLDVARVMSRRFLITDARAFNVVIAMYVKAGLMREA 700
Query: 278 M----RMSEAGFHPDLTTFN 293
+ M AG P +TF+
Sbjct: 701 LEALKEMRRAGLVPSRSTFS 720
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 129/307 (42%), Gaps = 29/307 (9%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF----------VLEAQ 99
L+ LGR K L + + + E + P T L+ + G ++E+
Sbjct: 123 LLRTLGRAAKWELLQKYWSEMLGERVPPTIFTYSILVDVHGRAGMKDEAIRFYRHMIESG 182
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRI-GCFNEIISIIDQVSCRNADLLPEVYSRAISC 158
V +E++ S+++ + DL +A G F+E +++D + R + PE Y+ IS
Sbjct: 183 VEPDEVMVSTYMNLQRRFGDLEEAEKAFWGLFSE--NLVDGTTKRPEN--PETYNTMISF 238
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI- 217
+G+ + EM+ G + + T NA I Y + G E E +K+ +
Sbjct: 239 YGEHAKFAEGSKVFAEMMKAGVELTTVTFNAMIHVYGKAGRTREAELLVTNMKQRKDCCP 298
Query: 218 DKEGIRAVSFTYLKERKFFMLG---EFLRDVGLGRKDLGNLLWNLLLLSYAGN---FKMK 271
D ++ Y+K K ++ E +RD G+ + + L+ +YA N +K +
Sbjct: 299 DVATYNSLIEMYVKNDKLELVSGCLERMRDSGV---SADQVTFRTLISAYAANNVVWKAE 355
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+L +E M +GF D + + + R S+ H G ++ TY V+
Sbjct: 356 ALVQE---MEGSGFLIDQAMYTVMIAMYVRARDVPKAE-SVFRFLHSRGGLEVSTYVGVM 411
Query: 332 DAYLDKR 338
D Y + +
Sbjct: 412 DVYAEHK 418
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 30 DLARKIIRYRKQEGF----VDCASLVE---DLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
++ ++++ K GF C+S+V D+GR ++ A ++ + + G+ D
Sbjct: 490 EILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVRE---AERVFKEMLASGVEADVICY 546
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
AL+ YA GF EAQ + L ++ FV V + +M Y +G E I +++S
Sbjct: 547 SALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLGLIAEAEKIYEEIS- 605
Query: 143 RNADLLPEVYS 153
L P+V++
Sbjct: 606 ---RLSPDVFA 613
>gi|125525011|gb|EAY73125.1| hypothetical protein OsI_00999 [Oryza sativa Indica Group]
Length = 634
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 121/287 (42%), Gaps = 12/287 (4%)
Query: 53 DLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQ-VVWEELLSSSFV 111
D GR ++ A ++V +++ G PD T L YA N A+ +V E +
Sbjct: 237 DAGRLEE---AWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQAGLR 293
Query: 112 LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELME 169
S + ++ Y R G E + + Q+ +++ +LP V ++ + F + ++
Sbjct: 294 TSERTWGIIVGGYCREGRLGEALRCVRQM--KDSGVLPNVIVFNTLLKGFLDANDMAAVD 351
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+ L M G D T + + S G + + + ++ + D + ++ Y
Sbjct: 352 DVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGY 411
Query: 230 LKERKFFMLGEFLRDVG-LG-RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
++ ++ E LR +G LG R ++ + + ++ + M + R + M +AG P
Sbjct: 412 VRAQQPEKAEELLRQMGRLGVRPNV--VTFTTVISGWCSVADMGNAVRVYAAMRDAGVRP 469
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+L TF +S + W L+ M+ V P TY V DA+
Sbjct: 470 NLRTFETLIWGYSELKQPWKAEEVLQMMQDAGVRPKQTTYCLVADAW 516
>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
Length = 453
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/292 (18%), Positives = 115/292 (39%), Gaps = 8/292 (2%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+LV L R+K +L++ V+ G+ PD+ +++ ++ +G + EA ++ ++
Sbjct: 52 TTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKE 111
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
S + + L+ YG G E + +++ + Y+ + + + +E
Sbjct: 112 SGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEE 171
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
N + +MV+ G D+ T N Y+ G E + R ++ +
Sbjct: 172 AWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVN 231
Query: 228 TYLKERKFFMLGEF---LRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEA 283
Y KE F ++++G+ L NL ++N L+ + + + M E
Sbjct: 232 GYCKEGNMVDASRFVFRMKELGV----LPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEEN 287
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
G PD+ TF+ A+S M + PD+ + + Y+
Sbjct: 288 GVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYV 339
>gi|356541064|ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 703
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 130/340 (38%), Gaps = 55/340 (16%)
Query: 45 VDCASLV---EDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVV 101
V C+ +V LG K A Q + +G+ L AL+ + G + EA ++
Sbjct: 296 VTCSIMVIVMRKLGHSAKD--AWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALII 353
Query: 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
EL + V + LMDAY + E + ++ + ++ + + +
Sbjct: 354 LSELEKKGVSSNTIVYNTLMDAYCKSNRVEEAEGLFVEMKTKGIKPTEATFNILMYAYSR 413
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET-AYGRLKRSRHLIDKE 220
+ Q E++E + EM G ++ + I Y + ++++M A+ ++K K+
Sbjct: 414 KMQPEIVEKLMAEMQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMK-------KD 466
Query: 221 GIRAVSFTYLK----------ERKFFMLGEFLRDVGLGRK---------------DLGNL 255
GI+ S +Y K + E ++ G+ D L
Sbjct: 467 GIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTL 526
Query: 256 L--W---------------NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+ W N L+ +A + K + + + G HP + T+N+ A
Sbjct: 527 MKIWKLMRREKVEGTRVTFNTLVDGFAKHGYYKEARDVISKFANVGLHPTVMTYNMLMNA 586
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
++R L LE M ++ PD VTY ++ A+L R
Sbjct: 587 YARGGRHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVR 626
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 71/168 (42%), Gaps = 7/168 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A+ ++ EG+ P T AL+ + G +W+ + + + L+D
Sbjct: 491 AYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEGTRVTFNTLVD 550
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ + G + E +I + + N L P V Y+ ++ + + G+ + L+EM +
Sbjct: 551 GFAKHGYYKEARDVISKFA--NVGLHPTVMTYNMLMNAYARGGRHSKLPELLEEMAAHNL 608
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG---IRAV 225
DS T + I + R ++ + + +S ++D + +RAV
Sbjct: 609 KPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVMDVDSYQKLRAV 656
>gi|297848306|ref|XP_002892034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337876|gb|EFH68293.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 409
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 1/195 (0%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y++ I +GK Q+E E TL M +RGF +D T A + YS+ G E + +K
Sbjct: 168 YTKIIHYYGKLNQVEDAERTLLSMKNRGFLIDQVTLTAIVQLYSKAGYHKLAEETFNEIK 227
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+D ++ Y++ LR++ G ++ LL +Y+ +
Sbjct: 228 LIGEPLDNRSYGSMIMAYIRAGAPEKGEALLREMDSQEICAGREVYKALLRAYSMGGDAE 287
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+R F + AG PD+ + A+S + L+ E+M+ + V+
Sbjct: 288 GAKRVFDAVQIAGITPDVKLCGLLINAYSVSGQSQNARLAFENMRKAGIKATDKCVALVL 347
Query: 332 DAY-LDKRLGRNLDF 345
AY +++L L F
Sbjct: 348 AAYEKEEKLNEALGF 362
>gi|297733647|emb|CBI14894.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 115/270 (42%), Gaps = 29/270 (10%)
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
LM Y+ + V EA+ ++ E+ + + + + LMDAY R EII + + +
Sbjct: 353 TLMDAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNILMDAYSR-RMQPEIIENL-LLEMQ 410
Query: 144 NADLLPEV--YSRAISCFGKQGQL-ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ L P V Y+ IS +G+Q ++ ++ + M G S + A I YS G
Sbjct: 411 DMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWH 470
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR-----------DVGLGR 249
+ TA+ +KR EGI+ TY +L F R + L
Sbjct: 471 EKAYTAFENMKR-------EGIKPSIETYTA-----LLDAFRRAGDTQTLMKIWKLMLSD 518
Query: 250 KDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
K G + +N+LL +A + + GF P + T+N+ A++R L
Sbjct: 519 KIEGTRVTFNILLDGFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQHSRL 578
Query: 309 HLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
L+ M ++ PD +TY ++ AY+ R
Sbjct: 579 PQLLKEMTSLNLKPDSITYSTMIYAYVRVR 608
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 131/316 (41%), Gaps = 16/316 (5%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L K+ + + + G + ++++ L + K A L ++++G+ P+ T +L+ C
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
N G +A + +++ V S L+DA+ + G E + D++ R+ D
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
YS I+ F +L+ + + MVS+ D T N I + ++ + E +
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFF-----MLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ + R L+ V++ L + F M E +++ + +N LL
Sbjct: 422 MSQ-RGLVGN----TVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF---WDLHLSLEHMKHESVG 321
N K++ F + + P + T+NI + WDL +L + V
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS---LKGVK 533
Query: 322 PDLVTYGCVVDAYLDK 337
PD+V Y ++ + K
Sbjct: 534 PDVVAYNTMISGFCRK 549
>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/398 (19%), Positives = 150/398 (37%), Gaps = 15/398 (3%)
Query: 11 SFKFKRFNVPSHQTHPKNGDLA--RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVN 68
S RF+ S + +G ++ +++R + VD L+ + + K L +
Sbjct: 26 SLSHNRFHSKSLHFNTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSH 85
Query: 69 TVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126
+ S G+ P+ TL L+ C+ N G + EA ++++++ F V L++ +
Sbjct: 86 QMDSFGIPPNIYTLHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 145
Query: 127 IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSAT 186
+G + I ++ + +N Y+ I K Q+ N EMV++G S D T
Sbjct: 146 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 205
Query: 187 GNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVG 246
N+ I + T + S+ + D V KE K + + +
Sbjct: 206 YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMI 265
Query: 247 LGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ N++ +N L+ Y ++ F M PD T++ +
Sbjct: 266 QRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERL 325
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR-LGRNLDF--GLSKMNLDDSPVVSTDP 362
D M S P+LVTY ++D R L + + NLD P + +
Sbjct: 326 QDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLD--PDIQVNN 383
Query: 363 YVFEAFGK-GDFHSSSEAFLEFK----RQRKWTYRKLI 395
+ + G+ ++ + F + WTY +I
Sbjct: 384 IAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMI 421
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/349 (21%), Positives = 137/349 (39%), Gaps = 36/349 (10%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ PD + +L+ + NG + +A + + ++ +S V + + L++ Y R G +E
Sbjct: 320 GVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEA 379
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ I D++ + L Y+ ++ K+ L EMV RG D T I
Sbjct: 380 LEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHG 439
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
+ + G++ + + +G ++ ++ I+ TY ++ F + + +
Sbjct: 440 HCKEGNMGKALSLFG-------IMTQKNIKPDIVTY-----NILIDGFCKTTEMEK---A 484
Query: 254 NLLWNLLL--------LSYA----GNFKMKSLQREFM---RMSEAGFHPDLTTFNIRAVA 298
N LWN ++ +SYA G + + F M G P L T N
Sbjct: 485 NELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKG 544
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPV 357
+ R L M E VGPD +TY +++ ++ F ++KM P
Sbjct: 545 YCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPD 604
Query: 358 VSTDPYVFEAFGKGDFHSSSEAFLEFKRQR-----KWTYRKLIAVYLKK 401
V T + F + +E L +R + TY LI Y+ +
Sbjct: 605 VVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQ 653
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/330 (19%), Positives = 131/330 (39%), Gaps = 11/330 (3%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C SL+ L + LA ++ N + G+ + TL ++ + + + + ++
Sbjct: 153 CNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDME 212
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + L++AY R G E +++ +S + Y+ I+ K+G+
Sbjct: 213 QKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYV 272
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR---SRHLIDKEGIR 223
+ EM+S G S D+ T N ++ R + E + + + S LI +
Sbjct: 273 RAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLI 332
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
VS + M + RD+ N+++ +L+ Y N M +M E
Sbjct: 333 GVSSRNGHLDQALM---YFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQ 389
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL-DKRLGRN 342
G D+ +N + + D + + M V PD T+ ++ + + +G+
Sbjct: 390 GCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKA 449
Query: 343 LD-FG-LSKMNLDDSPVVSTDPYVFEAFGK 370
L FG +++ N+ P + T + + F K
Sbjct: 450 LSLFGIMTQKNI--KPDIVTYNILIDGFCK 477
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 110/291 (37%), Gaps = 39/291 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ L +KK A+ L + + G++PD T L+ + G + +A ++ +
Sbjct: 400 TILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQK 459
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQGQLE 166
+ + + L+D + + + + +++ R + P S AI G G +
Sbjct: 460 NIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRK--IFPNHISYAILVNGYCNLGFVS 517
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
EM+ +G T N I Y R G L++ + G++ EG+ S
Sbjct: 518 EAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMI-------SEGVGPDS 570
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
TY F+ GE++ D L N +M G
Sbjct: 571 ITYNTLINGFVKGEYM--------DKAFFLIN--------------------KMETKGLQ 602
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
PD+ T+N+ F R + L L M + PD TY +++ Y+ +
Sbjct: 603 PDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQ 653
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 127/313 (40%), Gaps = 46/313 (14%)
Query: 27 KNGDLARKIIRYRKQEGFV-DCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
+N D A+ ++ GFV D + L + L ++ + A +LV + +G P+ T
Sbjct: 345 QNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTY 404
Query: 83 CALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
L+ LC A+ +A + E L+SS FV V + ++D + G ++ + +++ +
Sbjct: 405 NTLIDGLCKASK--TEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM 462
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R Y+ + + G+++ + KEMVS+ + D+ + + Y +
Sbjct: 463 LKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCK---- 518
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
R K ++ ++D GIR + DV +N L
Sbjct: 519 ------SSRTKEAQKVVD--GIRGTPYI---------------DV-----------YNAL 544
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
+ Y ++ + F M+ G P++ T+NI + + LE M
Sbjct: 545 MDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGC 604
Query: 321 GPDLVTYGCVVDA 333
PD+V+Y ++D
Sbjct: 605 VPDVVSYNIIIDG 617
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 111/282 (39%), Gaps = 38/282 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V+ L ++ + A ++V + G P T ALM G V EA +++E++S
Sbjct: 442 IVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKD 501
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
L++ Y + E ++D + R + +VY+ + + K+G+L+ +
Sbjct: 502 CTADALAYVSLVNGYCKSSRTKEAQKVVDGI--RGTPYI-DVYNALMDGYCKEGRLDEIP 558
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
N ++M RG + T N + + G + E +F +
Sbjct: 559 NVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE-----------------------AFPF 595
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
L E + G + +N+++ K K ++ +M +AG PD
Sbjct: 596 L---------ESMHSAGCVPDVVS---YNIIIDGLFKASKPKEARQVLDQMIQAGIPPDA 643
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
T+N F + F D L++M V PD VTY ++
Sbjct: 644 VTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLI 685
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 119/298 (39%), Gaps = 28/298 (9%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L+E L R + AH + + S+ D +L+ Y + EAQ V + +
Sbjct: 475 TALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG 534
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ ++ V + LMD Y + G +EI ++ + ++CR + Y+ + K G+++
Sbjct: 535 TPYI---DVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE 591
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIRA 224
L+ M S G D + N II F + + K +R ++D+ GI
Sbjct: 592 AFPFLESMHSAGCVPDVVSYN--IIIDGLFKA--------SKPKEARQVLDQMIQAGIPP 641
Query: 225 VSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS---LQ 274
+ TY KE +F L+++ D N+ +N L+ + ++ L
Sbjct: 642 DAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELM 701
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
E +R TT+N + L ++HM V + VTY +D
Sbjct: 702 HEMLR--NGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFID 757
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 129/318 (40%), Gaps = 31/318 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + + A ++ +++ GL PD +T C L+ YA G ++E + + ++ +
Sbjct: 306 SLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRN 365
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V + L+ AY + +E + + ++ R L P V Y I K G ++
Sbjct: 366 GIHPDHHVFNILICAYAKQEKVDEAMLVFSKM--RQHGLNPNVVTYGAVIGILCKSGSVD 423
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
++M+ G + + I+Y S SL + + ++ LI + R +
Sbjct: 424 DAMLYFEQMIDEGLTPN------IIVYTSLIHSL----CIFDKWDKAEELILEMLDRGIC 473
Query: 227 F----------TYLKERKFFMLGEFLRD--VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
++ KE + E L D V +G K + ++ L+ Y KM
Sbjct: 474 LNTIFFNSIIHSHCKEGRVIE-SEKLFDLMVRIGVKP-NVITYSTLIDGYCLAGKMDEAT 531
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ M G PD T+N + R+S D + M V P+++TY ++
Sbjct: 532 KLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 591
Query: 335 LDKR---LGRNLDFGLSK 349
R + L G++K
Sbjct: 592 FHTRRTAAAKELYVGITK 609
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 28/198 (14%)
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+V YS I+ K ++ L MV G + T N+ + Y S + + A
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYC---SSEQPKEA 285
Query: 207 YGRLKRSRHLIDKEGIRAVSFTY-------------LKERKFFMLGEFLRDVGLGRKDLG 253
G LK+ R +G+ TY + RK F + + GL D+
Sbjct: 286 IGFLKKMR----SDGVEPDVVTYNSLMDYLCKNGRSTEARKIF---DSMTKRGL-EPDIA 337
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ LL YA + + M G HPD FNI A+++ + L
Sbjct: 338 T--YCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFS 395
Query: 314 HMKHESVGPDLVTYGCVV 331
M+ + P++VTYG V+
Sbjct: 396 KMRQHGLNPNVVTYGAVI 413
>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 874
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 123/295 (41%), Gaps = 16/295 (5%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+E R+++ L + G+ P+ T L+ ++ V A+ +++E+
Sbjct: 118 LLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKG 177
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLEL 167
+ L+ Y + G ++ + +++ S + +LP VY+ +S F ++G+ +
Sbjct: 178 CKPNEFTFGILVRGYCKAGLTDKGLELLN--SMESFGVLPNKVVYNTIVSSFCREGRNDD 235
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI-RAVS 226
E +++M G D T N+ I + G + + + ++ +L G+ R S
Sbjct: 236 SEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYL----GLPRPNS 291
Query: 227 FTYLKERKFFMLGEFLRDVGL------GRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMR 279
TY K F L D DL +L +N+ L + K + +
Sbjct: 292 ITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQ 351
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M + G P + ++NI ++ M D + MK V PD VTYGC++ Y
Sbjct: 352 MIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGY 406
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 138/333 (41%), Gaps = 40/333 (12%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +V +K G+ PD T L+ Y + G V A+ + +E++ ++ + + + L+
Sbjct: 380 AKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLH 439
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ +G +E ++ +++ + L + + G+L+ +K M G +
Sbjct: 440 SLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAA 499
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL--IDKEGIRAVSFTYLKERKFFMLGE 240
GN++I SL E + S L + K G A + T E M+GE
Sbjct: 500 LGNLGNSYIGLVDD--SLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAE----MMGE 553
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L+ +L +N+ + + K+ S R M + G H L T+N +
Sbjct: 554 KLQP--------DSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLG 605
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTY----------GCVVDA--YLDKRLGRNLDFGLS 348
+ +++H ++ M+ + + P++ TY G V DA LD+ + +N+
Sbjct: 606 IKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNI----- 660
Query: 349 KMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAF 380
+P V + Y+ AF K DF + E F
Sbjct: 661 ------APNVFSFKYLIGAFCKVPDFDMAQEVF 687
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 111/260 (42%), Gaps = 24/260 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V R+ + + +LV ++ EGL+PD T + + G VL+A ++ ++
Sbjct: 222 TIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELD 281
Query: 109 SFV---LSVQVLSDLM-DAYGRIGCFNEIISIIDQVSCRNADLLP-EVYSRAISCFGKQG 163
++ + +LM + ++G + ++ + + N DL+ + Y+ + + G
Sbjct: 282 EYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIR-ENDDLVSLQSYNIWLQGLVRHG 340
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+ E LK+M+ +G + N + + G L++ +T G +KR+ D
Sbjct: 341 KFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYG 400
Query: 224 AVSFTYLKERKF----FMLGEFLRDVGLGRKDLGNL----LWNLLLLSYAGNFKMKSLQR 275
+ Y K +L E +R+ L N+ LWN+ +S A
Sbjct: 401 CLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEA---------E 451
Query: 276 EFMR-MSEAGFHPDLTTFNI 294
E +R M+E G+ D T NI
Sbjct: 452 ELLRKMNEKGYGLDTVTCNI 471
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 135/305 (44%), Gaps = 42/305 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM---LCYANNGFVLEAQVVWEELL 106
L+E + + A++L+ +K E L N+ +C + LC+ G + A +++E++
Sbjct: 413 LIEGYYKVQNMEKAYELLIEIKKENLTA-NAYMCGAIVNGLCHC--GDLTRANELFQEMI 469
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
S ++ + + ++ + G F E I I+ + ++ L P+V Y+ I F K G+
Sbjct: 470 SWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVM--KDQGLSPDVFCYNTVIIGFCKAGK 527
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS---------RH 215
+E ++ L EM+++G + T AFI Y R G + E ++ + S
Sbjct: 528 MEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTD 587
Query: 216 LID---KEGIRAVSFTYLKERKFFMLGE-FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
LID K+G +F + ML + L DV ++L+ + N K++
Sbjct: 588 LIDGYCKDGNTTKAFAKFR----CMLDQGVLPDVQ---------THSVLIHGLSKNGKLQ 634
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE---HMKHESVGPDLVTYG 328
F + + G PD+ T+ S + DL + E M + + P++VTY
Sbjct: 635 EAMGVFSELLDKGLVPDVFTY---TSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYN 691
Query: 329 CVVDA 333
+++
Sbjct: 692 ALING 696
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 125/326 (38%), Gaps = 36/326 (11%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
V C L++ + A + +G+LPD T L+ + NG + EA V+ E
Sbjct: 583 VICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSE 642
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
LL V V + L+ + G + D + + + Y+ I+ K G+
Sbjct: 643 LLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGE 702
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR---------H 215
+ + +G + +S T + I Y + +LTE + +K
Sbjct: 703 IAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCA 762
Query: 216 LID-------------------KEGIRAV-SFTYLKERKFFMLGEFLRDVGLGRKDLGN- 254
LID +EGI + +F L + FF LG+ + L + N
Sbjct: 763 LIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALID-GFFKLGKLIEAYQLVEDMVDNH 821
Query: 255 -----LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ + +L+ + +K ++ FM M + P++ T+ ++R+ ++
Sbjct: 822 ITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMF 881
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYL 335
+ M + PD + + +VDA+L
Sbjct: 882 SLFDEMVARGIKPDDLAWSVMVDAHL 907
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/307 (18%), Positives = 125/307 (40%), Gaps = 18/307 (5%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
K+ R+R C L+ + K + + G P T ++ C G
Sbjct: 88 KMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEG 147
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS 153
+ A+ ++EE+ + + ++D YG++G ++ + +++ + + Y+
Sbjct: 148 DIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYN 207
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
I+CF K G+L +EM G + + + + + + + + Y ++R
Sbjct: 208 SLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRV 267
Query: 214 RHLIDKEGIRAVSFTYLKERKF--------FMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
H+ ++ ++T L + F L + +VG+ + + + L+
Sbjct: 268 GHVPNE-----FTYTSLVDANCKIGNLSDAFRLANEMLEVGV---EWNVVTYTALIDGLC 319
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM-SMFWDLHLSLEHMKHESVGPDL 324
+MK ++ F +M AG P+L ++N F + +M L L L +K + PDL
Sbjct: 320 DAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALEL-LNELKGRGIQPDL 378
Query: 325 VTYGCVV 331
+ YG +
Sbjct: 379 LLYGTFI 385
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 8/211 (3%)
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD-VGLGRKDLGNL 255
G L E + ++KR R + + K K + F +D +G G K
Sbjct: 76 LGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPT-VF 134
Query: 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315
+N+++ +++ + F M G PD T+N + ++ D E M
Sbjct: 135 TYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEM 194
Query: 316 KHESVGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFH 374
K S PD++TY +++ + +L + L+F P V + + +AF K D
Sbjct: 195 KSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMM 254
Query: 375 SSSEAF-LEFKR----QRKWTYRKLIAVYLK 400
+ F ++ +R ++TY L+ K
Sbjct: 255 QQAIKFYVDMRRVGHVPNEFTYTSLVDANCK 285
>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
macrostachya]
Length = 437
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/353 (19%), Positives = 136/353 (38%), Gaps = 52/353 (14%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G++
Sbjct: 55 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVM 114
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 115 PNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 174
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N Y+ + +GK
Sbjct: 175 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGK 234
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 235 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVL 294
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ + Y + L ++ K N+ + + AG +++ F +
Sbjct: 295 YQTMIVAYERAGLVAHAKRLLHEL----KSPDNIPRDTAIHILAGAGRIEEATYVFRQAI 350
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+AG D+ F FS+ + ++ + M+ PD V++AY
Sbjct: 351 DAGEVKDIMVFERMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAY 403
>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 108/269 (40%), Gaps = 18/269 (6%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G P TL L+ G V +A ++LL+ F L+ + L++ +IG
Sbjct: 372 GYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGA 431
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I ++ ++ R E+YS I K + EM +G S D T + I
Sbjct: 432 IKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYG 491
Query: 194 YSRFGSLTE---------METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
+ G L E ++T ++ L+D G +KE K +L L+
Sbjct: 492 FCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEG----KVKEAKS-VLAVMLK- 545
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ D+ +N L+ Y +++K Q F MS G PD+ T+ I F + M
Sbjct: 546 -ACVKPDV--FTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKM 602
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + M +++ PD VTY +VD
Sbjct: 603 VDEALNLFKEMHQKNMVPDTVTYSSLVDG 631
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/295 (19%), Positives = 117/295 (39%), Gaps = 49/295 (16%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVL-----EAQVVWEE 104
LV+ LG++ K A ++ + + PD T LM NG++L +AQ V+
Sbjct: 523 LVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLM-----NGYLLVYEVKKAQHVFNA 577
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQ 162
+ V + L++ + + +E +++ ++ +N ++P+ YS + K
Sbjct: 578 MSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKN--MVPDTVTYSSLVDGLCKS 635
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G++ + + + EM RG D T N+ I + G L + + ++K +GI
Sbjct: 636 GRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMK-------DQGI 688
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
R +FT+ +LL ++K Q F +
Sbjct: 689 RPNTFTF----------------------------TILLDGLCKGGRLKDAQEVFQDLLT 720
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
G+H D+ +N+ + + + L M+ P+ VT+ +++A K
Sbjct: 721 KGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKK 775
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 25/273 (9%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G PD TL L+ G V EA ++LL+ F L+ + L++ RIG
Sbjct: 58 GYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAA 117
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I + ++ R A E+Y+ I K + EM +G S + T + I
Sbjct: 118 IKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYG 177
Query: 194 YSRFGSLTE---------METAYGRLKRSRHLID---KEGIRAVSFTYLKERKFFMLGEF 241
+ G L E ++T + L+D KEG +KE K +L
Sbjct: 178 FCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEG-------KVKEAKS-VLAVM 229
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
L+ + ++ + ++ L+ Y +++K Q F MS G PD+ ++NI F +
Sbjct: 230 LK--ACVKSNV--ITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCK 285
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ D L+L S P ++ + ++D++
Sbjct: 286 IKRV-DKALNLFKEMILSRFPPIIQFNKILDSF 317
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 55/284 (19%), Positives = 125/284 (44%), Gaps = 27/284 (9%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + N + G+ PD + ++ + V +A +++E++ S F +Q + ++D
Sbjct: 257 AQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQ-FNKILD 315
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSR--AISCFGKQGQLELMENTLKEMVSRGF 180
++ ++ ++ +S+ ++ + + P++++ I+CF GQ+ + L +++ RG+
Sbjct: 316 SFAKMKHYSTAVSLSHRLELKG--IQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGY 373
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EG--IRAVSFTYLKERKF 235
+ T N I + G++K++ H DK +G + VS+ L
Sbjct: 374 PPSTVTLNTLI----------KGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLIN-GV 422
Query: 236 FMLGEFLRDVGLGRKDLGNL------LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+G+ + L RK G L +++ ++ + + F M+ G D+
Sbjct: 423 CKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADV 482
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
T++ F + + L M +++ PD+ TY +VDA
Sbjct: 483 VTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDA 526
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C L+ + +K K A ++ +G+L D T LM NG V +A+ ++ E+
Sbjct: 563 CTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMR 622
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
V L+D + ++G + SI D++ +Y+ + F + G++E
Sbjct: 623 GKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIE 682
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
+ L EM +GF ++ T I Y + G L E + +K
Sbjct: 683 KAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMK 727
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 53/290 (18%), Positives = 117/290 (40%), Gaps = 6/290 (2%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
ASL+E R+K ++L+ +K ++ T + ++G + A + +E+ +
Sbjct: 389 ASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGA 448
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
S +V + + L+ + + F + + ++ ++ R + P+ Y+ I K ++
Sbjct: 449 SGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEM--REQGIAPDTFCYNSLIIGLSKAKKM 506
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ + L EMV GF D+ T AFI Y G + + + +K +
Sbjct: 507 DEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGL 566
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
Y K+ K R + + + LG+ + +L+ N K+ + F M G
Sbjct: 567 INEYCKKGKVIEACSAFRSM-VEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKG 625
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD+ ++ FS++ + M + +++ Y ++ +
Sbjct: 626 IAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGF 675
>gi|449447783|ref|XP_004141647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Cucumis sativus]
Length = 1020
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ G+ + A L ++K+ G PD T +L+ ++ V EA+ + E+
Sbjct: 537 MIKAYGKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLTEMQRMG 596
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLEL 167
F + Q S ++ +Y R+G ++ + + D + +AD+ P +Y ++ F + GQ E
Sbjct: 597 FKPTCQTFSAVIASYARLGLMSDAVEVYDMMV--HADVEPNEILYGVLVNGFAEIGQAEE 654
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
+ M G + + + I +S+ GSL + Y R+K
Sbjct: 655 ALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMK 698
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 101/271 (37%), Gaps = 45/271 (16%)
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+C L Y+ I +GK G+L+ N EM++ G S+D+ T N I G L
Sbjct: 313 NCVRKPRLTSTYNTLIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHL 372
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
E ET ++ ++ G+ + TY N+
Sbjct: 373 AEAETLLLKM-------EERGLSPDTKTY----------------------------NIF 397
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L YA N + + + R+ E G PD+ T S +M D+ + M+ +
Sbjct: 398 LSLYANNGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHI 457
Query: 321 GPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD--SPVVSTDPYVFEAFGKGDFHSSSE 378
D + V+ Y+++ L L K LD SP +S + +A+ + +E
Sbjct: 458 LLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTELSPRISA--AIIDAYAEKGLWFEAE 515
Query: 379 AFLEFKRQRK------WTYRKLIAVYLKKQL 403
+ +KR Y +I Y K +L
Sbjct: 516 SIFLWKRDLSGKKMDVMEYNVMIKAYGKAEL 546
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 115/273 (42%), Gaps = 23/273 (8%)
Query: 32 ARKIIRYRKQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A K R ++ G + SL++ + A ++ N +K+ D +++
Sbjct: 655 ALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASNSMIN 714
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
YA+ G V EA+ V+E+L + V + ++ Y IG +E I + +++ + + L
Sbjct: 715 LYADLGMVSEAKQVFEDLRERGYADGVS-FATMIYLYKNIGMLDEAIEVAEEM--KESGL 771
Query: 148 LPEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR----FGSLT 201
L + S + I C+ GQ+ L EMV+R D+ T N + +++
Sbjct: 772 LRDATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIPLEAVS 831
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYL--KERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
++E+A+ K ++ I A F+ L FL+ L + +N+
Sbjct: 832 QLESAFHEEKTYA----RQAIIAAVFSGLGLHASALESCDTFLK----AEVQLDSFAYNV 883
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ +Y K+ FM+M + PDL T+
Sbjct: 884 AIYAYGAAEKIDKALNIFMKMKDQNLKPDLVTY 916
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 109/282 (38%), Gaps = 16/282 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+ ++ GL PD T + YANNG + A + + V L+
Sbjct: 375 AETLLLKMEERGLSPDTKTYNIFLSLYANNGNIDGALKCYRRIREVGLFPDVVTHRALLH 434
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
++ ++I ++ + L R I + +G L+ + L E +
Sbjct: 435 VLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAK-ILLEKYRLDTEL 493
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG--------IRAVSFTYLKERK 234
A I Y+ G E E+ + R L K+ I+A L E K
Sbjct: 494 SPRISAAIIDAYAEKGLWFEAESIF---LWKRDLSGKKMDVMEYNVMIKAYGKAELYE-K 549
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
F+L + +++ G + +N L+ ++G + +R M GF P TF+
Sbjct: 550 AFLLFKSMKNRGTWPDEC---TYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSA 606
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
+++R+ + D + M H V P+ + YG +V+ + +
Sbjct: 607 VIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAE 648
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/260 (18%), Positives = 99/260 (38%), Gaps = 55/260 (21%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L+D YG+ G + ++ ++ + ++ I G G L E L +M RG
Sbjct: 327 LIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERG 386
Query: 180 FSVDSATGNAFIIYYSRFGSL-----------------------------------TEME 204
S D+ T N F+ Y+ G++ ++E
Sbjct: 387 LSPDTKTYNIFLSLYANNGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVE 446
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKE----RKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
+++S L+D+ + V Y+ E R +L ++ D L + + +
Sbjct: 447 NVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTELSPR-----ISAAI 501
Query: 261 LLSYAGN---FKMKSL---QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ +YA F+ +S+ +R+ +G D+ +N+ A+ + ++ L +
Sbjct: 502 IDAYAEKGLWFEAESIFLWKRDL-----SGKKMDVMEYNVMIKAYGKAELYEKAFLLFKS 556
Query: 315 MKHESVGPDLVTYGCVVDAY 334
MK+ PD TY ++ +
Sbjct: 557 MKNRGTWPDECTYNSLIQMF 576
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 125/316 (39%), Gaps = 10/316 (3%)
Query: 28 NGDLARKIIRYRKQEG-FVDCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC 83
N D A K R ++ G F D + L+ L + ++ ++ +L D +L
Sbjct: 406 NIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEHSLP 465
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII---DQV 140
++ Y N G + A+++ E+ + LS ++ + ++DAY G + E SI +
Sbjct: 466 RVIKMYINEGLLDRAKILLEKYRLDT-ELSPRISAAIIDAYAEKGLWFEAESIFLWKRDL 524
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
S + D++ Y+ I +GK E K M +RG D T N+ I +S +
Sbjct: 525 SGKKMDVME--YNVMIKAYGKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLV 582
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
E ++R + AV +Y + E + + +L+ +L
Sbjct: 583 DEARRLLTEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVL 642
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
+ +A + + + F M ++G + AFS++ D MK+
Sbjct: 643 VNGFAEIGQAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMED 702
Query: 321 GPDLVTYGCVVDAYLD 336
G D + +++ Y D
Sbjct: 703 GADTIASNSMINLYAD 718
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 110/276 (39%), Gaps = 20/276 (7%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+KS + PD+ T AL+ V +A+ + E+ S SV+ + L+DAYG G
Sbjct: 395 MKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ 454
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
+ +++ + + + + F K G++ L +M+ + + ++ N+
Sbjct: 455 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 514
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEF- 241
I Y G + ++K S G+ A TY + + E
Sbjct: 515 IIDAYIESGDTEQALLLVEKMKNS-------GVSASIVTYNLLLKGLCRSSQIDEAEELI 567
Query: 242 --LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
LR+ GL R D+ + +N ++ + M++ G P L T + A
Sbjct: 568 YTLRNQGL-RPDV--VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSAL 624
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ D+ + M H++V P YG +VDAY+
Sbjct: 625 ASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYV 660
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 107/258 (41%), Gaps = 5/258 (1%)
Query: 83 CALML-CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141
C+++L +G V +A+ V+E L+ + V + + + L++ Y ++ I +Q+
Sbjct: 337 CSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMK 396
Query: 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
R+ Y+ I+ K + E+ + EM G T N I Y G L
Sbjct: 397 SRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLE 456
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
+ T +++ D +V + K K L D+ ++N ++
Sbjct: 457 KCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSII 516
Query: 262 LSY--AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
+Y +G+ + L E +M +G + T+N+ R S + + ++++
Sbjct: 517 DAYIESGDTEQALLLVE--KMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 574
Query: 320 VGPDLVTYGCVVDAYLDK 337
+ PD+V+Y ++ A +K
Sbjct: 575 LRPDVVSYNTIISACCNK 592
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 129/305 (42%), Gaps = 30/305 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + + A ++ +++ GL P+ +T L+ YA G ++E + + ++ +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
+ V S L+ AY + G ++ + + ++ R L P+ Y I K G++E
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKM--RQQGLNPDTVTYGTVIGILCKSGRVE 426
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
++M+ S GN I+Y S SL + + +++ LI + R +
Sbjct: 427 DAMRYFEQMIDERLS----PGN--IVYNSLIHSLC----IFDKWDKAKELILEMLDRGIC 476
Query: 227 F----------TYLKERKFFMLGEFLRD--VGLGRKDLGNLL-WNLLLLSYAGNFKMKSL 273
++ KE + E L D V +G K N++ ++ L+ Y KM
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIE-SEKLFDLMVRIGVKP--NIITYSTLIDGYCLAGKMDEA 533
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ M G PD T+N + ++S D + M+ V PD++TY ++
Sbjct: 534 TKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQG 593
Query: 334 YLDKR 338
R
Sbjct: 594 LFQTR 598
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/205 (17%), Positives = 84/205 (40%), Gaps = 2/205 (0%)
Query: 132 EIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
E + ++ + D P+V Y+ I+ F K+G L+ T EM+ RG + T N+
Sbjct: 180 EALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNS 239
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
I + ++ + + ++ + + ++ Y + FL+ +
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ + +N L+ N + ++ F M++ G P++TT+ ++ ++H
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 359
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAY 334
L+ M + P+ + ++ AY
Sbjct: 360 GLLDLMVRNGIHPNHYVFSILICAY 384
>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 110/276 (39%), Gaps = 26/276 (9%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
+G+ DN T L+ G V +A+ V + L+ V + + +++ Y +IG +
Sbjct: 235 GKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMD 294
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
I I+Q+ R ++ I F + ++ E +K+MV +G + T N I
Sbjct: 295 RAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILI 354
Query: 192 IYYSR-------FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERKFFMLG 239
Y R F L EME + E +S+ L K+ K
Sbjct: 355 DGYGRLCVFSRCFQILEEMEE------------NGEKPNVISYGSLINCLCKDGKILEAE 402
Query: 240 EFLRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
LRD+ +GR L N ++N+L+ K++ R F MS+ G + T+N
Sbjct: 403 MVLRDM-VGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKG 461
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+M + + PD++TY ++ Y
Sbjct: 462 LCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGY 497
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 128/303 (42%), Gaps = 33/303 (10%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ GR Q++ ++ G P+ + +L+ C +G +LEA++V +++
Sbjct: 353 LIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRG 412
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + + + L+D +G E + D++S Y+ I K G+L+ E
Sbjct: 413 VLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAE 472
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR--------SRHLI---- 217
+ S G D T N+ I YS G+ + Y +K+ + H +
Sbjct: 473 EMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGC 532
Query: 218 DKEGIRAVSFTYLKERKFFMLGEFLR-DVGLGRKDLGNLLWNLLLLSYAGNFKMK---SL 273
KEGI+ LKE F E L+ ++ R +++N ++ Y ++ SL
Sbjct: 533 SKEGIK------LKETLF---NEMLQMNLSPDR-----VVYNAMIHCYQETGHVQKAFSL 578
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
Q+E + M G PD T+N + + + ++ MK + + P+ TY ++
Sbjct: 579 QKEMVDM---GVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQG 635
Query: 334 YLD 336
+ D
Sbjct: 636 HCD 638
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + K A ++ + S G PD T +L+ Y+N G + ++E +
Sbjct: 457 SLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKL 516
Query: 109 SFVLSVQVLSDLMDAYGRIGC------FNEIISIIDQVSCRNADLLPE--VYSRAISCFG 160
++ L+ + G FNE++ + +L P+ VY+ I C+
Sbjct: 517 GLKPTINTFHPLISGCSKEGIKLKETLFNEMLQM---------NLSPDRVVYNAMIHCYQ 567
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ G ++ + KEMV G D+ T N+ I+ + + G L+E
Sbjct: 568 ETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSE 609
>gi|225456802|ref|XP_002275673.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic [Vitis vinifera]
gi|147821419|emb|CAN76897.1| hypothetical protein VITISV_010606 [Vitis vinifera]
Length = 692
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 115/270 (42%), Gaps = 29/270 (10%)
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
LM Y+ + V EA+ ++ E+ + + + + LMDAY R EII + + +
Sbjct: 353 TLMDAYSKSNRVEEAEGLFGEMKAKGVMPTSATYNILMDAYSR-RMQPEIIENL-LLEMQ 410
Query: 144 NADLLPEV--YSRAISCFGKQGQL-ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ L P V Y+ IS +G+Q ++ ++ + M G S + A I YS G
Sbjct: 411 DMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKVGIKPTSHSYTALIHAYSVGGWH 470
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR-----------DVGLGR 249
+ TA+ +KR EGI+ TY +L F R + L
Sbjct: 471 EKAYTAFENMKR-------EGIKPSIETYTA-----LLDAFRRAGDTQTLMKIWKLMLSD 518
Query: 250 KDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
K G + +N+LL +A + + GF P + T+N+ A++R L
Sbjct: 519 KIEGTRVTFNILLDGFAKQGHYMEARDVIFEFGKIGFQPTVMTYNMLMNAYARGGQHSRL 578
Query: 309 HLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
L+ M ++ PD +TY ++ AY+ R
Sbjct: 579 PQLLKEMTSLNLKPDSITYSTMIYAYVRVR 608
>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 689
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 102/250 (40%), Gaps = 6/250 (2%)
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151
NG + EA ++W + + + + G N+ + ++ +V + L
Sbjct: 372 NGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYA 431
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ I C K+ +LE N +KEM G ++S NA I R L++ +
Sbjct: 432 YASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMRGMG 491
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV---GLGRKDLGNLLWNLLLLSYAGNF 268
++ L + + KF F++++ GL + DL +++LL +
Sbjct: 492 KNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGL-KPDLKT--YSILLGGLCRDR 548
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
K++ + + ++G PD+ NI + D + +M+H + +LVTY
Sbjct: 549 KIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYN 608
Query: 329 CVVDAYLDKR 338
+++ Y R
Sbjct: 609 TLMEGYFKVR 618
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 101/239 (42%), Gaps = 31/239 (12%)
Query: 32 ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
AR + + +EGF ++++ DL + K A +L + + + PD + L+
Sbjct: 168 ARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILI- 226
Query: 88 CYANNGFVLE-----AQVVWEELLSSSFVL-SVQVLSDLMDAYGRIGCFNEIISIIDQVS 141
+GF+ E A +W++LL S V +V+ + ++ + G ++ + I D++
Sbjct: 227 ----DGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMK 282
Query: 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
+ YS I +G ++ E+ E+V R +D T N + + R G +
Sbjct: 283 QNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIK 342
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
E L+ R + + + VS+ L + L + G+ D ++W L+
Sbjct: 343 E------SLELWRIMEQRNSVNIVSYNIL-------IKGLLEN---GKIDEATMIWRLM 385
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ R+KK A Q+ + +GL P T L+ G AQ ++E+LS+
Sbjct: 359 LINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAG 418
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+ Y + G E +S ++ R D ++Y+ I K G+L+
Sbjct: 419 HIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAH 478
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
T +++ G D T A I Y + G L E + +++ + L D + +
Sbjct: 479 ATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGF 538
Query: 230 LKERKFFMLGEFLRDVG 246
L+ K + FL ++
Sbjct: 539 LRSNKVSEMKAFLEEIA 555
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 14/188 (7%)
Query: 27 KNGDLARKIIRYRKQEGF----VDCASLVE---DLGRKKKPHLAHQLVNTVKSEGLLPDN 79
K D A ++ R Q+G V C L+ +LGR K A + + S G +PD
Sbjct: 367 KKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKS---AQNFFDEMLSAGHIPDL 423
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
T C L+ Y NG V EA + +L ++Q+ + ++D + G ++ + ++
Sbjct: 424 YTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEK 483
Query: 140 VSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
+ L P+V Y+ IS + ++G L+ ++ L++M G D+ T N + + R
Sbjct: 484 LPL--IGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRS 541
Query: 198 GSLTEMET 205
++EM+
Sbjct: 542 NKVSEMKA 549
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/289 (17%), Positives = 113/289 (39%), Gaps = 39/289 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S+++ L ++ K A +++ + +G+ PD T ++ Y G V A+ +++ +++
Sbjct: 288 SVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINK 347
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQGQLE 166
S + + L++ Y R +E + + ++S + L P + + + G + G+ +
Sbjct: 348 SIEPDIISYNILINGYARQKKIDEAMQVCREISQKG--LKPSIVTCNVLLHGLFELGRTK 405
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+N EM+S G D T + Y + G + E + + +L+R R
Sbjct: 406 SAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR------------ 453
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+D ++ ++ N K+ F ++ G H
Sbjct: 454 -----------------------EDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLH 490
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
PD+ T+ + + + + L M+ D TY +V +L
Sbjct: 491 PDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFL 539
>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
Length = 770
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 125/326 (38%), Gaps = 38/326 (11%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L R + A QL + L P T L+ A E V +E+
Sbjct: 257 LMDALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFG 316
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + + L+ + R G +E + + D++ + Y+ K+G++E E
Sbjct: 317 ITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAE 376
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
L EM+ G +V + N+ + ++ R ++ R +R L + +
Sbjct: 377 QILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQE 436
Query: 230 LKERK---------FFMLGEFLRDVGLGRKDL-------GN------------------- 254
L +R F +LG+ L V + + GN
Sbjct: 437 LCKRGKHEEAAEIWFLVLGKGL-GVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEF 495
Query: 255 --LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+ +N+++ KM+ + M + GF PDL TFN A+ + D+ L
Sbjct: 496 DRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLL 555
Query: 313 EHMKHESVGPDLVTYGCVVDAYLDKR 338
+ MK E + PD+VTYG ++D Y +
Sbjct: 556 DQMKSEGLKPDIVTYGTIIDGYCKAK 581
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 103/260 (39%), Gaps = 33/260 (12%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSR 154
EA + ++++ F + + + AY +G +I+ ++DQ+ ++ L P++ Y
Sbjct: 515 EAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQM--KSEGLKPDIVTYGT 572
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
I + K + L E++ G ++ NA I Y R GS+++ A G L +
Sbjct: 573 IIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISD---AIGVLDTMK 629
Query: 215 HLIDKEGIRAVSFTY------------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
H GI+ TY ++E K L+++ +LG + + +++
Sbjct: 630 H----NGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNI-----ELGVIGYTIIIQ 680
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
+ K+ F M P+ T+ A+ + + + M + P
Sbjct: 681 GFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVP 740
Query: 323 DLVTY-----GCVVDAYLDK 337
D V+Y GC LDK
Sbjct: 741 DTVSYNTLISGCCEVDSLDK 760
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 63/143 (44%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ GR A +++T+K G+ P T +LM + G V EA+ ++ + +
Sbjct: 607 ALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILK 666
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ L V + ++ + +IG +E + ++ R+ Y+ + + K G E
Sbjct: 667 NIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEA 726
Query: 169 ENTLKEMVSRGFSVDSATGNAFI 191
EMVS G D+ + N I
Sbjct: 727 FKLFDEMVSSGIVPDTVSYNTLI 749
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 127/313 (40%), Gaps = 51/313 (16%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L++ + ++ L+PD + L+ Y G + EA +++ EL V SV + L+D
Sbjct: 314 ARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLID 373
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC--FGKQGQL----ELMENTL---- 172
R+G + + + D++ D P+V++ I F K G L EL + L
Sbjct: 374 GLCRMGDLDVAMRLKDEMIKHGPD--PDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGL 431
Query: 173 ---------------------------KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+EM++RGF D T N FI + G+L E
Sbjct: 432 QPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASE 491
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYL------KERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
++ + + D ++ +L K R F+ E L G+ + + +
Sbjct: 492 LVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFL--EMLSK-GIFPSVVT---YTV 545
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
L+ SYA ++K F M E G HP++ T+N ++ + M+ +
Sbjct: 546 LIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKG 605
Query: 320 VGPDLVTYGCVVD 332
+ P+ TY +++
Sbjct: 606 ISPNKYTYTILIN 618
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 143/353 (40%), Gaps = 55/353 (15%)
Query: 30 DLARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D+AR++ + G V ++++ ++ K A QL+ ++ G LP++ T L
Sbjct: 172 DVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVL 231
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ +++G + +A+ + +E+L +S L+ Y G +E + +++ R A
Sbjct: 232 VNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGA 291
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
Y+ + K G++ L MV++ D + N I Y+R G++ E
Sbjct: 292 VPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFL 351
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD-------------- 251
+ L R R L+ V++ L + +G+ DV + KD
Sbjct: 352 LFAEL-RFRGLVPS----VVTYNTLID-GLCRMGDL--DVAMRLKDEMIKHGPDPDVFTF 403
Query: 252 ---------LGNL-----LWNLLL--------LSY----AGNFKMKSLQREFMRMSEA-- 283
LGNL L++ +L +Y G K+ + F E
Sbjct: 404 TILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLA 463
Query: 284 -GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
GF PDL T+N+ ++ + ++ M + + PD VTY ++ A+L
Sbjct: 464 RGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHL 516
>gi|357138098|ref|XP_003570635.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Brachypodium distachyon]
Length = 519
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 97/233 (41%), Gaps = 31/233 (13%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+YS+ IS GK+GQ+ + +M + G D++ N+ I
Sbjct: 114 IYSKLISVMGKKGQIRMAMWLFSQMRNSGCKPDTSVYNSLI------------------- 154
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
HL ++ +A++ LG F + + R + +N+LL + A
Sbjct: 155 --GAHLHSRDKSKALAKA---------LGYFDKMKTIERCQPNIVTYNILLRACARASDA 203
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
K ++ F + E+ PD+ T+N + + M ++ L MK + PD++T+ +
Sbjct: 204 KQVEILFKDLDESLVTPDIYTYNGVIDGYGKNGMIKEMESVLVRMKSKQCRPDVITFNIL 263
Query: 331 VDAYLDKRLGRNLDFGL-SKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+D+Y K++ ++ S + + P T + +GK +E+ LE
Sbjct: 264 IDSYGRKQIFDKMEQVFKSLLRSKERPTHPTFNSMITNYGKARLKEKAESVLE 316
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 88/215 (40%), Gaps = 2/215 (0%)
Query: 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134
+ PD T ++ Y NG + E + V + S V + L+D+YGR F+++
Sbjct: 218 VTPDIYTYNGVIDGYGKNGMIKEMESVLVRMKSKQCRPDVITFNILIDSYGRKQIFDKME 277
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ + ++ I+ +GK E E+ L++M GF T I+ Y
Sbjct: 278 QVFKSLLRSKERPTHPTFNSMITNYGKARLKEKAESVLEKMDELGFKPSYVTQECLIMMY 337
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL-G 253
+ +++ + + L S+ + + A+ Y R M + L D + + + G
Sbjct: 338 AYCDCVSKAQQIFDELVNSQSTVPLSSLNAMLDAYCMNR-LPMEADRLLDAAIEKGVVPG 396
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
+ LL +Y +Q+ RM++ G P+
Sbjct: 397 ASTYKLLYKAYTRANDKVLVQKLLGRMNKQGIVPN 431
>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
Length = 635
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 128/306 (41%), Gaps = 9/306 (2%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
II + V +L+ L +K H +++ V+ G+ PD+ A++ ++ +G
Sbjct: 98 IIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGN 157
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--Y 152
+ EA + ++ S + + L+ YG G E +++ +S ++ ++ P + Y
Sbjct: 158 MQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLZLMS-QDENVRPNLRTY 216
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + + + + N + +MV+ G D+ T N Y++ G ++ E ++
Sbjct: 217 NVLVRAWCNKXNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQN 276
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEF---LRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
S ++ + Y KE K +F ++D+GL + +L +++N L+ +
Sbjct: 277 SNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGL-QPNL--VVFNSLIKGFIDAVD 333
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ M E G PD+ TF+ A+S + M + PD Y
Sbjct: 334 RDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSI 393
Query: 330 VVDAYL 335
+ Y+
Sbjct: 394 LAKGYV 399
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 54/295 (18%), Positives = 118/295 (40%), Gaps = 4/295 (1%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +V + + GL PD T + YA NG +A+ + E+ +S+ + + ++
Sbjct: 232 AWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIG 291
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
Y + G E + + ++ ++ L P V++ I F + + L M G
Sbjct: 292 GYCKEGKIKEALQFVYRM--KDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGV 349
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
D T + + +S G + + + + ++R D ++ Y++ + E
Sbjct: 350 KPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEE 409
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L + +++ ++ + +M+ + F +M E G P+L TF +
Sbjct: 410 ILNAMIKSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYG 469
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS 355
W L+ M+ +V P+ T V +A+ L + + LS + +++
Sbjct: 470 EARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEET 524
>gi|449525162|ref|XP_004169587.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g73710-like [Cucumis sativus]
Length = 1026
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ G+ + A L ++K+ G PD T +L+ ++ V EA+ + E+
Sbjct: 537 MIKAYGKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLTEMQRMG 596
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLEL 167
F + Q S ++ +Y R+G ++ + + D + +AD+ P +Y ++ F + GQ E
Sbjct: 597 FKPTCQTFSAVIASYARLGLMSDAVEVYDMMV--HADVEPNEILYGVLVNGFAEIGQAEE 654
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
+ M G + + + I +S+ GSL + Y R+K
Sbjct: 655 ALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMK 698
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 110/259 (42%), Gaps = 19/259 (7%)
Query: 42 EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVV 101
E + SL++ + A ++ N +K+ D +++ YA+ G V EA+ V
Sbjct: 669 ENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASNSMINLYADLGMVSEAKQV 728
Query: 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCF 159
+E+L + V + ++ Y IG +E I + +++ + + LL + S + I C+
Sbjct: 729 FEDLRERGYADGVS-FATMIYLYKNIGMLDEAIEVAEEM--KESGLLRDATSFRKVIECY 785
Query: 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR----FGSLTEMETAYGRLKRSRH 215
GQ+ L EMV+R D+ T N + +++++E+A+ K
Sbjct: 786 AINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIPLEAVSQLESAFHEEKTYA- 844
Query: 216 LIDKEGIRAVSFTYL--KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
++ I A F+ L FL+ L + +N+ + +Y K+
Sbjct: 845 ---RQAIIAAVFSGLGLHASALESCDTFLK----AEVQLDSFAYNVAIYAYGAAEKIDKA 897
Query: 274 QREFMRMSEAGFHPDLTTF 292
FM+M + PDL T+
Sbjct: 898 LNIFMKMKDQNLKPDLVTY 916
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 101/271 (37%), Gaps = 45/271 (16%)
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+C L Y+ I +GK G+L+ N EM++ G S+D+ T N I G L
Sbjct: 313 NCVRKPRLTSTYNTLIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHL 372
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
E ET ++ ++ G+ + TY N+
Sbjct: 373 AEAETLLLKM-------EERGLSPDTKTY----------------------------NIF 397
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L YA + + + + R+ E G PD+ T S +M D+ + M+ +
Sbjct: 398 LSLYANDGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHI 457
Query: 321 GPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD--SPVVSTDPYVFEAFGKGDFHSSSE 378
D + V+ Y+++ L L K LD SP +S + +A+ + +E
Sbjct: 458 LLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTELSPRISA--AIIDAYAEKGLWFEAE 515
Query: 379 AFLEFKRQRK------WTYRKLIAVYLKKQL 403
+ +KR Y +I Y K +L
Sbjct: 516 SIFLWKRDLAGKKXDVMEYNVMIKAYGKAEL 546
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 108/280 (38%), Gaps = 16/280 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+ ++ GL PD T + YAN+G + A + + V L+
Sbjct: 375 AETLLLKMEERGLSPDTKTYNIFLSLYANDGNIDGALKCYRRIREVGLFPDVVTHRALLH 434
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
++ ++I ++ + L R I + +G L+ + L E +
Sbjct: 435 VLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAK-ILLEKYRLDTEL 493
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG--------IRAVSFTYLKERK 234
A I Y+ G E E+ + R L K+ I+A L E K
Sbjct: 494 SPRISAAIIDAYAEKGLWFEAESIF---LWKRDLAGKKXDVMEYNVMIKAYGKAELYE-K 549
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
F+L + +++ G + +N L+ ++G + +R M GF P TF+
Sbjct: 550 AFLLFKSMKNRGTWPDEC---TYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSA 606
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+++R+ + D + M H V P+ + YG +V+ +
Sbjct: 607 VIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGF 646
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/260 (18%), Positives = 99/260 (38%), Gaps = 55/260 (21%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L+D YG+ G + ++ ++ + ++ I G G L E L +M RG
Sbjct: 327 LIDLYGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERG 386
Query: 180 FSVDSATGNAFIIYYSRFGSL-----------------------------------TEME 204
S D+ T N F+ Y+ G++ ++E
Sbjct: 387 LSPDTKTYNIFLSLYANDGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVE 446
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKE----RKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
+++S L+D+ + V Y+ E R +L ++ D L + + +
Sbjct: 447 NVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTELSPR-----ISAAI 501
Query: 261 LLSYAGN---FKMKSL---QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ +YA F+ +S+ +R+ AG D+ +N+ A+ + ++ L +
Sbjct: 502 IDAYAEKGLWFEAESIFLWKRDL-----AGKKXDVMEYNVMIKAYGKAELYEKAFLLFKS 556
Query: 315 MKHESVGPDLVTYGCVVDAY 334
MK+ PD TY ++ +
Sbjct: 557 MKNRGTWPDECTYNSLIQMF 576
>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Vitis vinifera]
Length = 635
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 128/306 (41%), Gaps = 9/306 (2%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
II + V +L+ L +K H +++ V+ G+ PD+ A++ ++ +G
Sbjct: 98 IIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGN 157
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--Y 152
+ EA + ++ S + + L+ YG G E +++ +S ++ ++ P + Y
Sbjct: 158 MQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMS-QDENVRPNLRTY 216
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + + + + N + +MV+ G D+ T N Y++ G ++ E ++
Sbjct: 217 NVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQN 276
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEF---LRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
S ++ + Y KE K +F ++D+GL + +L +++N L+ +
Sbjct: 277 SNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGL-QPNL--VVFNSLIKGFIDAVD 333
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ M E G PD+ TF+ A+S + M + PD Y
Sbjct: 334 RDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSI 393
Query: 330 VVDAYL 335
+ Y+
Sbjct: 394 LAKGYV 399
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 55/287 (19%), Positives = 113/287 (39%), Gaps = 4/287 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
LV KK A +V + + GL PD T + YA NG +A+ + E+ +S+
Sbjct: 219 LVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSN 278
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLEL 167
+ + ++ Y + G E + + ++ ++ L P V++ I F +
Sbjct: 279 VQPNERTCCIIIGGYCKEGKIKEALQFVYRM--KDLGLQPNLVVFNSLIKGFIDAVDRDG 336
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ L M G D T + + +S G + + + + ++R D ++
Sbjct: 337 VNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAK 396
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y++ + E L + +++ ++ + +M+ + F +M E G P
Sbjct: 397 GYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAP 456
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+L TF + W L+ M+ +V P+ T V +A+
Sbjct: 457 NLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAW 503
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 125/287 (43%), Gaps = 32/287 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L T+ +G PD T LM G + A + E+ F +V + ++
Sbjct: 330 ATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLH 389
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
++ + G +++ ++++++S + L + Y+ I K G+++ ++EM S+G +
Sbjct: 390 SFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNP 449
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D + N I + + E E + L +EG+ A TY ++ L
Sbjct: 450 DICSYNTIIYHLCNNEQMEEAEHMFENLL-------EEGVVANGITY-----NTIIHALL 497
Query: 243 RDVGLGR-KDLGNLLWNLLL-------LSYAGNFKM----KSLQREFM---RMSEAGFHP 287
RD GR +D L ++L +SY G K ++ R + M+E G P
Sbjct: 498 RD---GRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKP 554
Query: 288 DLTTFNIRAVAFSRMSMFWD-LHLSLEHMKHESVGPDLVTYGCVVDA 333
+ ++NI + D L LS + M ++ + PD+VTY +++
Sbjct: 555 NNVSYNILISELCKERRVRDALELS-KQMLNQGLAPDIVTYNTLING 600
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 130/294 (44%), Gaps = 38/294 (12%)
Query: 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134
LLP + L A++L + +GF + + F+ + + + L+D YG G
Sbjct: 335 LLPPCAQLEAILLGKSVHGFAIR----------NGFLPHLVLETALVDMYGECGKLKPAE 384
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ Q++ RN L+ ++ I+ + K G+ +++ ++ D+ T + + Y
Sbjct: 385 CLFGQMNERN--LIS--WNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAY 440
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY------LKERKFFMLGEFLRDVGLG 248
+ SL E E +G + + + + ++ F Y L+ R+ F F +DV
Sbjct: 441 AELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTF-KDV--- 496
Query: 249 RKDLGNLLWNLLLLSYA-GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
+ WN ++++YA F S++ F M E GF P+ +TF ++ S + +
Sbjct: 497 ------ISWNTVIMAYAIHGFGRISIEL-FSEMREKGFEPNGSTFVSLLLSCSVAGLVNE 549
Query: 308 LHLSLEHMKHE-SVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVST 360
MK + ++ P + YGC++D +GR + +K +++ P+ T
Sbjct: 550 GWEYFNSMKRDYNINPGIEHYGCILDL-----IGRTGNLDHAKNFIEEMPLAPT 598
>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 128/306 (41%), Gaps = 9/306 (2%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
II + V +L+ L +K H +++ V+ G+ PD+ A++ ++ +G
Sbjct: 98 IIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGN 157
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--Y 152
+ EA + ++ S + + L+ YG G E +++ +S ++ ++ P + Y
Sbjct: 158 MQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMS-QDENVRPNLRTY 216
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + + + + N + +MV+ G D+ T N Y++ G ++ E ++
Sbjct: 217 NVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQN 276
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEF---LRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
S ++ + Y KE K +F ++D+GL + +L +++N L+ +
Sbjct: 277 SNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGL-QPNL--VVFNSLIKGFIDAVD 333
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ M E G PD+ TF+ A+S + M + PD Y
Sbjct: 334 RDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSI 393
Query: 330 VVDAYL 335
+ Y+
Sbjct: 394 LAKGYV 399
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 58/307 (18%), Positives = 121/307 (39%), Gaps = 4/307 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
LV KK A +V + + GL PD T + YA NG +A+ + E+ +S+
Sbjct: 219 LVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSN 278
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLEL 167
+ + ++ Y + G E + + ++ ++ L P V++ I F +
Sbjct: 279 VQPNERTCCIIIGGYCKEGKIKEALQFVYRM--KDLGLQPNLVVFNSLIKGFIDAVDRDG 336
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ L M G D T + + +S G + + + + ++R D ++
Sbjct: 337 VNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAK 396
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y++ + E L + +++ ++ + +M+ + F +M E G P
Sbjct: 397 GYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAP 456
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGL 347
+L TF + W L+ M+ +V P+ T V +A+ L + + L
Sbjct: 457 NLKTFETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRIL 516
Query: 348 SKMNLDD 354
S + ++
Sbjct: 517 SAVKNEE 523
>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
Length = 592
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ R+KK A Q+ + +GL P T L+ G AQ ++E+LS+
Sbjct: 359 LINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAG 418
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+ Y + G E +S ++ R D ++Y+ I K G+L+
Sbjct: 419 HIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAH 478
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
T +++ G D T A I Y + G L E + +++ + L D + +
Sbjct: 479 ATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGF 538
Query: 230 LKERKFFMLGEFLRDVG 246
L+ K + FL ++
Sbjct: 539 LRSNKVSEMKAFLEEIA 555
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 14/188 (7%)
Query: 27 KNGDLARKIIRYRKQEGF----VDCASLVE---DLGRKKKPHLAHQLVNTVKSEGLLPDN 79
K D A ++ R Q+G V C L+ +LGR K A + + S G +PD
Sbjct: 367 KKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKS---AQNFFDEMLSAGHIPDL 423
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
T C L+ Y NG V EA + +L ++Q+ + ++D + G ++ + ++
Sbjct: 424 YTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEK 483
Query: 140 VSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
+ L P+V Y+ IS + ++G L+ ++ L++M G D+ T N + + R
Sbjct: 484 LPL--IGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRS 541
Query: 198 GSLTEMET 205
++EM+
Sbjct: 542 NKVSEMKA 549
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/289 (17%), Positives = 114/289 (39%), Gaps = 39/289 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S+++ L ++ K A +++ + +G+ PD T ++ Y G V A+ +++ +++
Sbjct: 288 SVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINK 347
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQGQLE 166
S ++ + L++ Y R +E + + ++S + L P + + + G + G+ +
Sbjct: 348 SIEPNIISYNILINGYARQKKIDEAMQVCREISQKG--LKPSIVTCNVLLHGLFELGRTK 405
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+N EM+S G D T + Y + G + E + + +L+R R
Sbjct: 406 SAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR------------ 453
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+D ++ ++ N K+ F ++ G H
Sbjct: 454 -----------------------EDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLH 490
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
PD+ T+ + + + + L M+ D TY +V +L
Sbjct: 491 PDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFL 539
>gi|15219046|ref|NP_175671.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207557|sp|Q9SSR4.1|PPR77_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52620
gi|5903044|gb|AAD55603.1|AC008016_13 Contains 3 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332194709|gb|AEE32830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 123/307 (40%), Gaps = 21/307 (6%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A L++ + K+ +A +L+ + G PD T L+ +G + +A + +L+
Sbjct: 384 APLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLID 443
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+ + LM + G F + ++ RN +LP+ VY+ I F + G
Sbjct: 444 RGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRN--ILPDAYVYATLIDGFIRSGDF 501
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ V +G VD NA I + R G L E R+ + DK +
Sbjct: 502 DEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTI 561
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA--GNFKMKSLQREFMRMSEA 283
Y+K++ + R + + + + L+ + G+FKM + F M
Sbjct: 562 IDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMA--EETFKEMQLR 619
Query: 284 GFHPDLTTFN--IRAVA-----FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
P++ T+ IR++A + +W+L M P+ VT+ C++ ++
Sbjct: 620 DLVPNVVTYTTLIRSLAKESSTLEKAVYYWEL------MMTNKCVPNEVTFNCLLQGFVK 673
Query: 337 KRLGRNL 343
K G+ L
Sbjct: 674 KTSGKVL 680
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 49/257 (19%), Positives = 97/257 (37%)
Query: 38 YRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLE 97
Y + C SL+ L + ++ A ++ + + G DN + C L+ N G V
Sbjct: 164 YDSVPDVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEV 223
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157
+ + E + ++ + ++ Y ++G + ++ + E + I+
Sbjct: 224 GRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMIN 283
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
F K+G + L E+ RG V N I R G + + G + +
Sbjct: 284 GFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKP 343
Query: 218 DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277
D + KE K + FL + NL + L+ +Y + + +
Sbjct: 344 DVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLL 403
Query: 278 MRMSEAGFHPDLTTFNI 294
++M+E G PD+ T+ I
Sbjct: 404 LQMAERGCKPDIVTYGI 420
>gi|388518405|gb|AFK47264.1| unknown [Lotus japonicus]
Length = 414
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 11/200 (5%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ I GK QLE EN L M RGF D + YS+ G L E + ++
Sbjct: 174 YTNIIHYCGKHNQLEEAENILTAMKQRGFICDQVILTTMVHIYSKAGHLDRAEEYFEEIR 233
Query: 212 RSRHLIDKEGIRAVSFTYLK----ERKFFMLGEF-LRDVGLGRKDLGNLLWNLLLLSYAG 266
+DK ++ Y++ ER +L E R++ G + ++ LL +Y+
Sbjct: 234 LLGEPLDKRSYGSMITAYIRAGMPERGESLLEEMDAREIYAGSE-----VYKALLRAYSR 288
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ QR F + AG PD + A+ ++ E+MK + P
Sbjct: 289 IGNAEGAQRVFDAIQLAGIIPDDKICGLVTKAYGMAGQSEKARIAFENMKRAGIEPTDRC 348
Query: 327 YGCVVDAY-LDKRLGRNLDF 345
G V+ AY + +L L+F
Sbjct: 349 IGSVLVAYEKESKLNTALEF 368
>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Vitis vinifera]
gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 117/304 (38%), Gaps = 51/304 (16%)
Query: 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSS-------SFVLSVQVLSDLMDA----- 123
LP+ S A+ + Y+ NG+ EA +++ E++ +F ++++ SDL D
Sbjct: 141 LPE-SVWVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRA 199
Query: 124 -----------------------YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160
Y GCF+E + + D + RN + + +
Sbjct: 200 VHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVK--- 256
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K G E +E + M +G T + +R +L + + + +S D
Sbjct: 257 KDGVFEAIE-AFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAP 315
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDV--GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
+ ++ Y K ++ R V G+ KDL + WN L+ YA N +M F
Sbjct: 316 VLNSLVDMYAKCGAM----DYCRRVFNGMQGKDLTS--WNTLITGYAINGRMTEAMESFQ 369
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE-SVGPDLVTYGCVVDAYLDK 337
M +GF PD TF S + D E MK + + P + Y C+VD
Sbjct: 370 EMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVL--G 427
Query: 338 RLGR 341
R GR
Sbjct: 428 RAGR 431
>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
Length = 793
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/360 (20%), Positives = 137/360 (38%), Gaps = 43/360 (11%)
Query: 17 FNVPSHQTHPKNGDLARKIIRYRKQEGF------VDCASLVEDLGRKKKPHLAHQLVNTV 70
FN+ H TH G LA + K +GF V +L+ RK A L+ +
Sbjct: 212 FNLLVH-THCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARM 270
Query: 71 KSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
K EG++P +T L+ YA G++ +A V E + + F + + L + G
Sbjct: 271 KKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 330
Query: 131 NEIISIIDQV------------------SC----RNAD---LLPEVYSRAISC------- 158
+E + D++ +C R++D LL E+ + +
Sbjct: 331 DEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNI 390
Query: 159 ----FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
++GQLE L+ M G + D T N I + G++ + + RS
Sbjct: 391 IVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSG 450
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
+D + + + KE+++ E LR + + ++ +Y +K +
Sbjct: 451 LKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPAL 510
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ M + P ++T+N S M + L + + PD TY ++ AY
Sbjct: 511 CLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAY 570
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 39/254 (15%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ +L ++K+ A +L+ G +PD + +M Y A +W+E++
Sbjct: 460 TLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKR 519
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
S+ + L+ +G E I ++++ L+P+ Y+ I + K+G LE
Sbjct: 520 KLTPSISTYNTLIKGLSTMGKLTEAIDKLNEL--MEMGLVPDDTTYNIIIHAYCKEGDLE 577
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+MV F D T N +L YGRL+++ L
Sbjct: 578 KAFQFHNKMVENSFKPDVVTCN----------TLMNGLCLYGRLEKAMKL---------- 617
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
F V G+K + + +N L+ + + + + R F M G
Sbjct: 618 --------------FESWVEKGKK-VDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQ 662
Query: 287 PDLTTFNIRAVAFS 300
PD+ T+N+ A S
Sbjct: 663 PDVFTYNVLLSALS 676
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+NLL+ ++ + +M G PD T+N A R M + L MK
Sbjct: 212 FNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMK 271
Query: 317 HESVGPDLVTYGCVVDAYLDKRLG 340
E + P TY +V AY RLG
Sbjct: 272 KEGIVPTRATYNTLVSAY--ARLG 293
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 114/293 (38%), Gaps = 24/293 (8%)
Query: 55 GRKKKPHLAHQLVNTVKSEG-----LLPDNSTLCALMLCYANNGFV-LEAQVVWEELLSS 108
R + PHLA QL+++ + G L N+ L AL + + L+A + L++
Sbjct: 147 ARLRLPHLAAQLLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQASLDA---FHSLIAL 203
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ + L+ + G + +S + ++ + L P+ Y+ ++ ++G L
Sbjct: 204 RLHPNHYTFNLLVHTHCSKGTLADALSTLSKM--QGFGLSPDAVTYNTLLNAHCRKGMLG 261
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFG------SLTEMETAYGRLKRSRHLIDKE 220
L M G AT N + Y+R G + E TA+G L
Sbjct: 262 EARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGF---EPDLWTYN 318
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
+ A K + F L + + +G+ D+ + +N L+ + + M
Sbjct: 319 VLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDV--VTYNTLVDACFKCQRSSDALNLLEEM 376
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
E G L T NI R + LE M E + PD++TY ++DA
Sbjct: 377 REKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDA 429
>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
Length = 859
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 109/246 (44%), Gaps = 13/246 (5%)
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRA 155
A +V+++++ + V V + S +++A+ ++G + + +++++ L P V Y+
Sbjct: 210 AVMVFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMV--KEGLEPNVVTYNGL 267
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
++ + +G E +E L+ M RG S + T + Y + G + E E ++
Sbjct: 268 VNGYVGRGDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDEL 327
Query: 216 LIDKEGIRAVSFT-YLK----ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
L+ E + V Y + E + E LR VGL + ++ N L+ Y ++
Sbjct: 328 LVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLR-VGL---KVNMVICNTLIKGYCKLGQV 383
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+R F+ M + PD ++N + R + E M + + P +VTY V
Sbjct: 384 CEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTV 443
Query: 331 VDAYLD 336
+ +D
Sbjct: 444 IKGLVD 449
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 118/324 (36%), Gaps = 36/324 (11%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C+ +V + + +A +++ + EGL P+ T L+ Y G + V +
Sbjct: 229 CSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMS 288
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE-VYSRAISCFGKQGQL 165
+V + LM Y + G +E ++ +V ++ E VY + + + G++
Sbjct: 289 ERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRM 348
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E EM+ G V+ N I Y + G + E E + + D +
Sbjct: 349 EDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTL 408
Query: 226 SFTYLKERKF---FMLGEFLRDVGL------------GRKDLGNL-----LWNLLL---- 261
Y +E K FML E + G+ G D+G+ LW+L++
Sbjct: 409 LDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGV 468
Query: 262 ----LSYAGN----FKMKSLQREFMRMSEA---GFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+S FKM R M E GF FN +M +
Sbjct: 469 TPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGA 528
Query: 311 SLEHMKHESVGPDLVTYGCVVDAY 334
+ MK + PD +TY + D Y
Sbjct: 529 VFDRMKELGLSPDEITYRTLSDGY 552
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSF 110
++ L + K A +++ + S G LPDN T C L+ + +G V EA + +E+L
Sbjct: 724 IDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGL 783
Query: 111 VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELM 168
+ ++ + + L++ ++G + + ++ L+P Y+ I C+ + G L+
Sbjct: 784 IPNITIYNALINGLCKLGNIDRAQRLFYKLY--QKGLVPNAVTYNILIGCYCRIGDLDKA 841
Query: 169 ENTLKEMVSRGFS 181
++M G S
Sbjct: 842 SRLREKMTEEGIS 854
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 104/266 (39%), Gaps = 14/266 (5%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
+++R + V C +L++ + + A ++ + L PD + L+ Y G
Sbjct: 357 EMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREG 416
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS 153
V +A ++ EE+L +V + ++ +G +++ + + + R
Sbjct: 417 KVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCC 476
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
+ CF K G + KE++ RGF+ + N I + G L E + R+K
Sbjct: 477 TMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKEL 536
Query: 214 RHLIDKEGIRAVSFTYLK----ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
D+ R +S Y K + F + G R ++ N L + G FK
Sbjct: 537 GLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLID-------GLFK 589
Query: 270 MKSLQRE---FMRMSEAGFHPDLTTF 292
++ L + M G P++ T+
Sbjct: 590 IRKLNDVTDLLVEMQTRGLSPNVVTY 615
>gi|297841913|ref|XP_002888838.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334679|gb|EFH65097.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 688
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 123/306 (40%), Gaps = 29/306 (9%)
Query: 27 KNGDL--ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
K GD+ R++ KQ + +L+ + A + + ++ EG PD T+
Sbjct: 363 KCGDMVSGRRVFYGSKQRNAISWTALMSGYAANGRFDQALRSIVWMQQEGFKPDVVTIAT 422
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
++ A + + + + L + F+ +V +++ LM Y + G + + D++ RN
Sbjct: 423 VLPVCAELRAIKQGKEIHCYALKNLFLPNVSLVTSLMVMYSKCGVPEYPVRLFDRLEQRN 482
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
+ ++ I C+ + G L + M+ DS T + S +L +
Sbjct: 483 V----KAWTAMIDCYVENGDLRAGIEVFRSMLLSKHRPDSVTMGRVLTVCSDLKALKLGK 538
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL---GNLLWNLLL 261
+G H++ KE ++ F K K + LR + G+L W ++
Sbjct: 539 ELHG------HILKKE-FESIPFVSAKIIKMYGQCGDLRSANFSFDAVVVKGSLTWTAII 591
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN-IRAVA------------FSRMSMFWDL 308
+Y N + + + F +M GF P+ TF I ++ F+ M ++L
Sbjct: 592 EAYGYNGRFRDAIKCFEQMVSRGFTPNTFTFTAILSICSQAGFADEAYRFFNLMLRMYNL 651
Query: 309 HLSLEH 314
H S EH
Sbjct: 652 HPSEEH 657
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/369 (21%), Positives = 156/369 (42%), Gaps = 28/369 (7%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L +K+ + + + V ++++ L + K A L + ++G+ PD T +L+ C
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLC 304
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
N G +A + +++ +V S L+DA+ + G E + D++ R+ D P+
Sbjct: 305 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PD 362
Query: 151 V--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
+ YS I+ F +L+ ++ + M+S+ + T + I + + + E +
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFR 422
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE-------FLRDVGLGRKDLGNLLWNLLL 261
+ + R L+ V++T L FF + F + V +G L +N+LL
Sbjct: 423 EMSQ-RGLVGN----TVTYTTLI-HGFFQARDCDNAQMVFKQMVSVGVHP-NILTYNILL 475
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF---WDLHLSLEHMKHE 318
N K+ F + + PD+ T+NI + W+L +L +
Sbjct: 476 DGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLS---LK 532
Query: 319 SVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY---VFEAFGKGDFHS 375
V P+++ Y ++ + K D L KM +D P+ ++ Y + GD +
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMK-EDGPLPNSGTYNTLIRARLRDGDREA 591
Query: 376 SSEAFLEFK 384
S+E E +
Sbjct: 592 SAELIKEMR 600
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 52/292 (17%), Positives = 109/292 (37%), Gaps = 43/292 (14%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
F++C R+ + LA ++ + G PD TL +L+ Y ++ + +A + +
Sbjct: 124 FINC------FCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVD 177
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
+++ + + L+ +E ++++DQ+ R Y ++ K+G
Sbjct: 178 QMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRG 237
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
++L + LK+M D N I ++ + + + + D +GIR
Sbjct: 238 DIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM-------DNKGIR 290
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF-KMKSLQREFMRMSE 282
FTY L+S N+ + R M E
Sbjct: 291 PDVFTYSS-----------------------------LISCLCNYGRWSDASRLLSDMIE 321
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+P++ TF+ AF + + + M S+ PD+ TY +++ +
Sbjct: 322 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 373
>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
Length = 864
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 123/294 (41%), Gaps = 13/294 (4%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
V C +L++ L + K A + T+ +P+N T A++ Y G + A+ +
Sbjct: 261 LVVCTTLIDGLFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMIDGYCKLGDMDGAESLLR 320
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--K 161
++ V +V S +++ Y + G + + I+ ++ +N ++P Y A G K
Sbjct: 321 DMEKKQVVPNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQN--IMPNAYIYATLIDGHLK 378
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
G+ + + EM G +S +AFI R + E E + L+D+
Sbjct: 379 AGKQDAAVDLYNEMKLNGLEENSFIVDAFINNLKRGRKMEEAEGLCKYMMSKGLLLDRVN 438
Query: 222 IRAVSFTYLK---ERKFFMLGEFLRDVGLGRKDLG-NLLWNLLLLSYAGNFKMKSLQREF 277
++ + K E F + E + + G+ + N+L N LL G + +S+ +
Sbjct: 439 YTSLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGLL--RLGKYDAESV---Y 493
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ E G PD T+N A+ + + MK SV P+ +T +V
Sbjct: 494 SGIRELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNILV 547
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 60/315 (19%), Positives = 112/315 (35%), Gaps = 47/315 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + + ++ GL PD +T ++ Y G + A +W E+ S + + + L+
Sbjct: 489 AESVYSGIRELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNILVG 548
Query: 123 AYGRIGCFNEIISIIDQV--------------------SCRNADLL-------------- 148
+ G I +++++ C AD +
Sbjct: 549 GLSKAGETERAIDVLNEMLLWGICPNVTIHRALLNACSKCERADTILQMHKRLVGMGLKA 608
Query: 149 -PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
EVY+ I+ G + L M G S D+ T NA I + F S + +E A
Sbjct: 609 NREVYNSLITVLCGLGMTKRATLVLNNMTKEGISADTVTYNALI--HGHFKS-SHIEKAL 665
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKE------RKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
+ + GIR + K + + ++D GL D L+N L+
Sbjct: 666 ATYTQMLNEGVSPGIRTYNLLLGGLLAAGLMSKAYEILSKMKDSGL---DPDASLYNTLI 722
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
+ K + + M G P +T+N+ F+++ L M+ V
Sbjct: 723 SGHGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLIEDFAKVGKMDQARELLNEMQVRRVP 782
Query: 322 PDLVTYGCVVDAYLD 336
P+ TY ++ + +
Sbjct: 783 PNSSTYDILICGWCN 797
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 122/305 (40%), Gaps = 52/305 (17%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLS 107
L+ L +K+K H A L+N + L P T +L+ C N+ LE+ L++
Sbjct: 410 LICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVND---LESAYRLLSLMN 466
Query: 108 SSFVLSVQ-VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ ++ Q S +D + G E ++ D V + +Y+ I + K G+++
Sbjct: 467 ENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKID 526
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE---GIR 223
+ + L+ M++ +S T N I E ++K + L+ K G++
Sbjct: 527 VAYSLLERMLNDACLPNSYTYNVLI----------EGLCKEKKMKEASSLVAKMLTMGVK 576
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
TY ++GE L+D G F + F M
Sbjct: 577 PTVVTYT-----ILIGEMLKD---------------------GAFDHA--LKVFNHMVSL 608
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG--- 340
G+ PD+ T+ A+ M ++ + M E + PDLVTY ++D Y RLG
Sbjct: 609 GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGY--ARLGLTH 666
Query: 341 RNLDF 345
R DF
Sbjct: 667 RAFDF 671
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/341 (21%), Positives = 126/341 (36%), Gaps = 56/341 (16%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVL 112
GRK + A L N +K +G P+ T L+ LC N + EA+ + E+ +
Sbjct: 313 GRKVE---ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENK--MDEARKMLSEMSEKGLIP 367
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
SV + L+D Y + G ++ I+D + + Y+ I K+ ++ L
Sbjct: 368 SVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALL 427
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY------------------------- 207
+M+ R S T N+ I + + ++E+AY
Sbjct: 428 NKMLERKLSPSLITYNSLIHGQCK---VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484
Query: 208 ---GRLKRSRHLIDK---EGIRAVSFTYLK-----------ERKFFMLGEFLRDVGLGRK 250
GR++ + L D +G++A Y + + +L L D L
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN- 543
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+ +N+L+ KMK +M G P + T+ I + F
Sbjct: 544 ---SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALK 600
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
HM PD+ TY + AY + + +D ++KMN
Sbjct: 601 VFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMN 641
>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39980, chloroplastic; Flags: Precursor
gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 678
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 126/333 (37%), Gaps = 55/333 (16%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ G+ K A L+ + G+LP+ + L+ Y N LEA V+ E+
Sbjct: 265 SMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV 324
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV----------------- 151
+ L + + ++D YG++ E + S R D+ P V
Sbjct: 325 NCALDLTTCNIMIDVYGQLDMVKEADRLF--WSLRKMDIEPNVVSYNTILRVYGEAELFG 382
Query: 152 --------------------YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
Y+ I +GK + E N ++EM SRG ++ T + I
Sbjct: 383 EAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTII 442
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM------LGEFLRDV 245
+ + G L T + +L+ S ID+ + + Y ER M L E
Sbjct: 443 SIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAY--ERVGLMGHAKRLLHELKLPD 500
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ R+ + +L+ AG + + F + E+G D++ F +SR +
Sbjct: 501 NIPRETA------ITILAKAG--RTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRY 552
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
++ E M+ PD V++AY +R
Sbjct: 553 VNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQR 585
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M S D + I R
Sbjct: 182 RQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDY 241
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D ++ Y K + F ++++ + ++ L
Sbjct: 242 SKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTL 301
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + ++ +
Sbjct: 302 LSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDI 361
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y + L
Sbjct: 362 EPNVVSYNTILRVYGEAEL 380
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/288 (18%), Positives = 113/288 (39%), Gaps = 17/288 (5%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L +++ + P+ + ++ Y EA ++ +
Sbjct: 333 CNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQ 392
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+V + ++ YG+ + +++ ++ R + YS IS +GK G+L+
Sbjct: 393 RKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLD 452
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LK ++ + I ++
Sbjct: 453 RAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILA 512
Query: 227 FTYLKE------RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
E R+ F GE KD+ ++ ++ Y+ N + ++ F +M
Sbjct: 513 KAGRTEEATWVFRQAFESGEV--------KDIS--VFGCMINLYSRNQRYVNVIEVFEKM 562
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES-VGPDLVTY 327
AG+ PD + A+ + F M+ E V PD V +
Sbjct: 563 RTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHF 610
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135
LPDN + A G EA V+ + S V + V +++ Y R + +I
Sbjct: 498 LPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIE 557
Query: 136 IIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ +++ R A P+ V + ++ +GKQ + E + +EM G +
Sbjct: 558 VFEKM--RTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSL 615
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKE 220
YS +E+ + RL+ ++ KE
Sbjct: 616 YSSKKDFEMVESLFQRLESDPNVNSKE 642
>gi|356534408|ref|XP_003535747.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35130-like [Glycine max]
Length = 357
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
R P+ A ++ + ++ G PD ++ L+ Y GF +A+ V++++ +++
Sbjct: 129 RAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMK 188
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
L AY ++G N+ I++Q+ L V ++ +G+ GQ ME L+ M
Sbjct: 189 SHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVLKSMLNLYGRLGQFGKMEEVLRVM 248
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEME 204
+ D +T N I Y + G + ME
Sbjct: 249 EKGSYVADISTYNILINRYGQAGXIERME 277
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 122/296 (41%), Gaps = 26/296 (8%)
Query: 28 NGDLARKIIRYRKQEGFVDCASLVEDL-------GRKKKPHLAHQLVNTVKSEGLLPDNS 80
N D A +I + K++ C S E G+ K +A L + + + P+
Sbjct: 21 NSDKAEEIFKRMKKDA---CKSTTETYTMLINLYGKAGKSFMALILFHEMTTHKCKPNIC 77
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN--------- 131
T AL+ + G +A+ V+E++ + V + LM+ Y F+
Sbjct: 78 TYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNALMETYKFSSPFSRAGYPYGAA 137
Query: 132 EIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
EI S++ + C P+ Y+ + +GK G + E K+M G + +
Sbjct: 138 EIFSLMQHMGCE-----PDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMV 192
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
YS+ G++ + E ++ +S ++ ++++ Y + +F + E LR + G
Sbjct: 193 LQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVLKSMLNLYGRLGQFGKMEEVLRVMEKGS 252
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+N+L+ Y ++ ++ F + G PD+ T+ R A+S ++
Sbjct: 253 YVADISTYNILINRYGQAGXIERMEDFFQLLPSKGLKPDVVTWTSRMGAYSXKKLY 308
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/327 (19%), Positives = 127/327 (38%), Gaps = 12/327 (3%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
TF+ +HG F+ H + L +++ Q V +++ L ++ +P L
Sbjct: 172 TFTTLVHGLFQ--------HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDL 223
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+N ++ + D ++ V +A ++ E+ + V S L+
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLIS 283
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G +++ ++ + R + ++ I F K+G+L E EM+ R
Sbjct: 284 CLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
+ T N+ I + L E + + + L D + + K +K E
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 243 RDVGLGRKDL-GN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
RD + R+ L GN + + L+ + + Q F +M G HP++ T+N
Sbjct: 404 RD--MSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 461
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ + E+++ + PD+ TY
Sbjct: 462 KNGKLEKAMVVFEYLQKSKMEPDIYTY 488
>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1245
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 110/271 (40%), Gaps = 9/271 (3%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
EG PD+ T L+ G V EA+ + S + + L++ YG G +
Sbjct: 502 EGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLK 561
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
S+ D+++ Y + K G L E LK + + +VD+ N I
Sbjct: 562 AFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLIT 621
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
+ G+L + + +G + + L D ++ ++ K + F ++ +
Sbjct: 622 AMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEA----EAR 677
Query: 253 GNLLWNLLLLS--YAGNFKMKSLQREF---MRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
GNL+ N ++ + G FK + F +M + G D+ T N +SRM
Sbjct: 678 GNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEK 737
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
H L M +++ GP+L TY ++ Y ++
Sbjct: 738 THDLLFEMGNQNQGPNLTTYNILLHGYSKRK 768
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 109/297 (36%), Gaps = 24/297 (8%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ DL R + + L+ ++ + P+ T L+ ++N G VL A+ + E+L+
Sbjct: 269 LIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFG 328
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+D + G F E + + + + Y + K + +L
Sbjct: 329 LSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLAR 388
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
M G V T I + G L E + K+GI TY
Sbjct: 389 GFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEM-------SKDGIDPDIVTY 441
Query: 230 ------------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277
LK K + + VGL ++++ L+ + +K R +
Sbjct: 442 SALINGFCRVGRLKTAKEIVCRIY--RVGLSPN---GIIYSTLIYNCCRMGCLKETIRIY 496
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M G PD TFN+ + + + + M + + P+ V++ C+++ Y
Sbjct: 497 EAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGY 553
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/279 (18%), Positives = 115/279 (41%), Gaps = 10/279 (3%)
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
H A ++ + GL P++ T L+ ++ +++A +++E++ + V S +
Sbjct: 29 HFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTI 88
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
++ ++G I ++ ++ + VYS I K + L EMV+RG
Sbjct: 89 INGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGI 148
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY----LKERKFF 236
S + T ++ + + G E + + ++ + D V+F L +
Sbjct: 149 SPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPD-----TVTFNILVDGLSKEGMI 203
Query: 237 MLGEFLRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
+ + + + + + N+ +N L+ Y +M Q+ F M G P + ++NI
Sbjct: 204 LEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNIL 263
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + L M H+++ PD VTY ++ +
Sbjct: 264 IKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGF 302
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/288 (17%), Positives = 109/288 (37%), Gaps = 39/288 (13%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++++ L + +A QL+ ++ +G P+ ++ + + EA E+++
Sbjct: 86 STIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVN 145
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQGQL 165
+V S ++ + +G NE S+ Q+ RN ++P+ + I G K+G +
Sbjct: 146 RGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERN--VMPDTVTFNILVDGLSKEGMI 203
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ + M+ +G + T NA + Y + E + + + R +R+
Sbjct: 204 LEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGC---APSVRS- 259
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
+N+L+ + + ++ + MS
Sbjct: 260 -------------------------------YNILIKGHCKSGRIDEAKGLLAEMSHKAL 288
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
PD T++ F + D LE M+ + PDL+TY V+D
Sbjct: 289 TPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDG 336
>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
Length = 773
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 116/304 (38%), Gaps = 51/304 (16%)
Query: 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSS-------SFVLSVQVLSDLMDA----- 123
LP+ S A+ + Y+ NG+ EA +++ E++ +F ++++ SDL D
Sbjct: 140 LPE-SVWVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLRTGRA 198
Query: 124 -----------------------YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160
Y GCF E + + D + RN L S
Sbjct: 199 VHAQVLKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMPHRN---LVSWNSLIAGLVK 255
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K+G E +E + M +G T + +R +L + + + +S D
Sbjct: 256 KEGVFEAIE-AFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAP 314
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDV--GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
+ ++ Y K ++ R V G+ KDL + WN L+ YA N +M F
Sbjct: 315 VLNSLVDMYAKCGAM----DYCRRVFNGMQGKDLTS--WNTLITGYAINGRMTEAMESFQ 368
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE-SVGPDLVTYGCVVDAYLDK 337
M +GF PD TF S + D E MK + + P + Y C+VD
Sbjct: 369 EMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGISPTVEHYACLVDVL--G 426
Query: 338 RLGR 341
R GR
Sbjct: 427 RAGR 430
>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
Length = 546
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 126/333 (37%), Gaps = 55/333 (16%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ G+ K A L+ + G+LP+ + L+ Y N LEA V+ E+
Sbjct: 133 SMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV 192
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV----------------- 151
+ L + + ++D YG++ E + S R D+ P V
Sbjct: 193 NCALDLTTCNIMIDVYGQLDMVKEADRLF--WSLRKMDIEPNVVSYNTILRVYGEAELFG 250
Query: 152 --------------------YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
Y+ I +GK + E N ++EM SRG ++ T + I
Sbjct: 251 EAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTII 310
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM------LGEFLRDV 245
+ + G L T + +L+ S ID+ + + Y ER M L E
Sbjct: 311 SIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAY--ERVGLMGHAKRLLHELKLPD 368
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ R+ + +L+ AG + + F + E+G D++ F +SR +
Sbjct: 369 NIPRETA------ITILAKAG--RTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRY 420
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
++ E M+ PD V++AY +R
Sbjct: 421 VNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQR 453
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 104/266 (39%), Gaps = 8/266 (3%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M S D + I R
Sbjct: 50 RQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDY 109
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D ++ Y K + F ++++ + ++ L
Sbjct: 110 SKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTL 169
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + ++ +
Sbjct: 170 LSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDI 229
Query: 321 GPDLVTYGCVVDAYLDKRL-GRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEA 379
P++V+Y ++ Y + L G + D V T + + +GK H +
Sbjct: 230 EPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATN 289
Query: 380 FLEFKRQR-----KWTYRKLIAVYLK 400
++ + R TY +I+++ K
Sbjct: 290 LVQEMQSRGIEPNAITYSTIISIWGK 315
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/288 (18%), Positives = 113/288 (39%), Gaps = 17/288 (5%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L +++ + P+ + ++ Y EA ++ +
Sbjct: 201 CNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQ 260
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+V + ++ YG+ + +++ ++ R + YS IS +GK G+L+
Sbjct: 261 RKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLD 320
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LK ++ + I ++
Sbjct: 321 RAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILA 380
Query: 227 FTYLKE------RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
E R+ F GE KD+ ++ ++ Y+ N + ++ F +M
Sbjct: 381 KAGRTEEATWVFRQAFESGEV--------KDIS--VFGCMINLYSRNQRYVNVIEVFEKM 430
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES-VGPDLVTY 327
AG+ PD + A+ + F M+ E V PD V +
Sbjct: 431 RTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHF 478
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135
LPDN + A G EA V+ + S V + V +++ Y R + +I
Sbjct: 366 LPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIE 425
Query: 136 IIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ +++ R A P+ V + ++ +GKQ + E + +EM G +
Sbjct: 426 VFEKM--RTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSL 483
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKE 220
YS +E+ + RL+ ++ KE
Sbjct: 484 YSSKKDFEMVESLFQRLESDPNVNSKE 510
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 4/182 (2%)
Query: 29 GDLARKIIRYRKQEGFV----DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
D AR +I + K G + ++LV+ L + K A ++ +KS GL PD T +
Sbjct: 361 ADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTS 420
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+ ++ NG + EA + E+ + + ++ R G F+E + +I+++ +
Sbjct: 421 LINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQG 480
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
L Y ++ + +L L M+SRGF AT N ++ + G +
Sbjct: 481 VYLNKGSYRIVLNSLTQNCELRKANKLLGLMLSRGFVPHYATSNELLVRLCKEGMANDAA 540
Query: 205 TA 206
TA
Sbjct: 541 TA 542
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 16/275 (5%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G PD T ++ G+++ A +E++ F +V + L+D + + G F E
Sbjct: 367 GFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEA 426
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+++ +S + L Y+ I K G+++ EM S+G D T N+ I
Sbjct: 427 SKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYG 486
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD----VGLGR 249
+ +ME A G L R L EG+ A + TY F+ E ++ VG R
Sbjct: 487 LCKN---DKMEEALG-LYRDMLL---EGVIANTVTYNTLIHAFLRLELIQQADKLVGEMR 539
Query: 250 ---KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW 306
L N+ +N L+ + + +M P + + NI +F R
Sbjct: 540 FRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVN 599
Query: 307 DLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
D L M + PD+VTY +++ ++GR
Sbjct: 600 DALQFLRDMIQRGLTPDIVTYNSLINGLC--KMGR 632
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 125/287 (43%), Gaps = 32/287 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L T+ +G PD T LM G + A + E+ F +V + ++
Sbjct: 330 ATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLH 389
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
++ + G +++ ++++++S + L + Y+ I K G+++ ++EM S+G +
Sbjct: 390 SFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNP 449
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D + N I + + E E + L +EG+ A TY ++ L
Sbjct: 450 DICSYNTIIYHLCNNEQMEEAEHMFENLL-------EEGVVANGITY-----NTIIHALL 497
Query: 243 RDVGLGR-KDLGNLLWNLLL-------LSYAGNFKM----KSLQREFM---RMSEAGFHP 287
RD GR +D L ++L +SY G K ++ R + M+E G P
Sbjct: 498 RD---GRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKP 554
Query: 288 DLTTFNIRAVAFSRMSMFWD-LHLSLEHMKHESVGPDLVTYGCVVDA 333
+ ++NI + D L LS + M ++ + PD+VTY +++
Sbjct: 555 NNVSYNILISELCKERRVRDALELS-KQMLNQGLAPDIVTYNTLING 600
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 13/201 (6%)
Query: 24 THPKNGDL--ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNST 81
H K G+L AR++ Q V +++ + K+P A +L ++ G+ PD T
Sbjct: 186 AHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFGEMRRSGVWPDEVT 245
Query: 82 LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141
+ +L+ A+ G + +V + + F V + + L+D YG+ GC E + ++
Sbjct: 246 MVSLVSACASLGDMETGMMVHRFVEENGFGWMVALCNALIDMYGKCGCLEEAWRVFHGMT 305
Query: 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
++ ++ ++ G + + MV G DS T A ++ Y+ G +
Sbjct: 306 RKSLI----TWNTMVTVCANYGNADEAFRLFEWMVCSGVVPDSVTLLALLVAYAHKGLVD 361
Query: 202 E-------METAYGRLKRSRH 215
E M+ YG R H
Sbjct: 362 EGIRLFESMDRDYGVEPRIEH 382
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 122/299 (40%), Gaps = 30/299 (10%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEEL 105
+++++ L + + A ++ + +G+ PD T ++ LC A V A+ V + +
Sbjct: 238 STIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQA--VDRAEGVLQHM 295
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQG 163
+ V + ++D + + ++ + + D+ P++ Y+ I + G
Sbjct: 296 IDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMI--DKDVKPDIQTYNCLIHGYLSTG 353
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+ + + L+EM +RG D T + + Y + G TE + + + ++GI+
Sbjct: 354 EWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIF-------YCMIRKGIK 406
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDL-----------GNLLWNLLLLSYAGNFKMKS 272
Y + G R DL N ++N++L +YA +
Sbjct: 407 PNVTIY----GILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDE 462
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
F RMS+ G PD+ T+ I A ++ D L M ++ V P+ V + +V
Sbjct: 463 AMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLV 521
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 83/389 (21%), Positives = 153/389 (39%), Gaps = 61/389 (15%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEG---LLPDNSTLCALM- 86
L R++ + V C +L++ L +K+ A +L++T+ +G P+ T ++
Sbjct: 148 LLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIID 207
Query: 87 -LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
LC A V A+ V + ++ L V S ++D + + ++ + +
Sbjct: 208 GLCKAQA--VDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMI--DK 263
Query: 146 DLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
+ P+V Y+ I K ++ E L+ M+ +G D T N I +
Sbjct: 264 GVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTII---DGLCKAQAV 320
Query: 204 ETAYGRLKRSRHLIDK-----------------------EGIRAVSFTYLKE-----RKF 235
+ A G L+ H+IDK E +R + Y + +
Sbjct: 321 DRADGVLQ---HMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTY 377
Query: 236 FMLGEFLRDVG-----------LGRKDL--GNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+L ++L G + RK + ++ +LL YA + L M
Sbjct: 378 SLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVA 437
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
G P+ FNI A+++ +M + M + PD+VTYG ++DA +LGR
Sbjct: 438 NGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALC--KLGR- 494
Query: 343 LDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371
+D + K N + V+ + VF + G
Sbjct: 495 VDDAVLKFNQMINDGVTPNSVVFNSLVYG 523
>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 141/333 (42%), Gaps = 22/333 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + A+Q+ +K + PD T L+ G + ++E++S
Sbjct: 227 LLDALAKSGMVDQAYQVFEDMKQKYCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKG 286
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
L++ + L++A G+ +++I ++ ++ YS + K+GQL +
Sbjct: 287 CALNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPNQFTYSITLDILAKEGQLHRLN 346
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA---VS 226
L ++ R ++ + + + S+ G ++E + ++ S D++ + V
Sbjct: 347 EVL-DICDR--YMNKSIYSYLVKSLSKSGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVL 403
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMRMSEAGF 285
K + L + + G+ D+G ++N++ S G K S + F +M G
Sbjct: 404 CNSGKTLEAIDLLHMMPEKGVA-TDVG--MYNMVF-SALGKLKQVSFITSLFDKMKANGI 459
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345
PDL T+NI ++ R+ + E M S PD++TY +++ LG+N D
Sbjct: 460 APDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINC-----LGKNGDL 514
Query: 346 GLSKMNLDD------SPVVSTDPYVFEAFGKGD 372
+ M + P V T + E FGK +
Sbjct: 515 DEAHMLFKEMQEKGYGPDVFTYSILIECFGKSN 547
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 4/161 (2%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ K+ L + +K+ G+ PD T ++ Y G V +A ++E++ +SS
Sbjct: 438 LGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPD 497
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
V + L++ G+ G +E + ++ + P+V YS I CFGK ++++ N
Sbjct: 498 VITYNSLINCLGKNGDLDEAHMLFKEMQEKGYG--PDVFTYSILIECFGKSNKVDMACNL 555
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+M++ G + T N + R G E Y +K+
Sbjct: 556 FLDMIAEGCIPNVVTYNILLDCLERHGKTAEAHKHYETMKQ 596
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 56/296 (18%), Positives = 111/296 (37%), Gaps = 41/296 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
LV+ L + AH + + + D +++ N+G LEA + +
Sbjct: 364 LVKSLSKSGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMMPEKG 423
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
V + + + A G++ + I S+ D++ + P++ Y+ IS +G+ G ++
Sbjct: 424 VATDVGMYNMVFSALGKLKQVSFITSLFDKMKANG--IAPDLFTYNIMISSYGRVGLVDK 481
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
++M + D T N+ I + G L E + ++ ++G F
Sbjct: 482 ASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQ-------EKGYGPDVF 534
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
TY ++L+ + + K+ F+ M G P
Sbjct: 535 TY----------------------------SILIECFGKSNKVDMACNLFLDMIAEGCIP 566
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNL 343
++ T+NI R + H E MK + + PD +T C + L+ R R +
Sbjct: 567 NVVTYNILLDCLERHGKTAEAHKHYETMKQQGLTPDSIT--CSILERLESRSQRTV 620
>gi|226533082|ref|NP_001141414.1| uncharacterized protein LOC100273524 [Zea mays]
gi|194704512|gb|ACF86340.1| unknown [Zea mays]
Length = 637
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 122/313 (38%), Gaps = 34/313 (10%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
+V +++ G PD T + YANN A+ + E+ + S + ++ Y
Sbjct: 230 VVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEELIVEI-QTRVRTSERTWGIIIGGYC 288
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
R G E + + Q+ ++A +P V ++ + F + + L M G D
Sbjct: 289 REGRLEEALRCVQQM--KDAGSVPNVVIFNTLLKGFLDANDMAAVNKILGLMEKFGIKPD 346
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTYLKERKFFMLG- 239
+ Y + + + + G + + H+ DK GI Y K F+
Sbjct: 347 ------IVTYSHQLNTFSSL----GHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQ 396
Query: 240 --EFLRDVGLGRKDLG---NLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
E D+ L LG N++ + ++ + M+S R + +M ++G +P+L TF
Sbjct: 397 QPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYPNLRTFE 456
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLD 353
+S W L+ M+ V P TY + DA+ L N++ N +
Sbjct: 457 TPIWGYSEQKQPWKAEEVLQMMRETGVKPKQSTYCLIADAWKAVGLTENIN------NSN 510
Query: 354 DSPVVSTDPYVFE 366
SP PY E
Sbjct: 511 GSP---NGPYAIE 520
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 214 RHLIDKEGIRA--VSFTYL-----KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
+HL+D EG + V++T L +R F + L +V L ++ +N L+ ++
Sbjct: 91 KHLMD-EGHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVE 149
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE-SVGPDLV 325
+M F +M +G HP +TFN + + + + M E SV P+L
Sbjct: 150 AKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLT 209
Query: 326 TYGCVVDAYLDKR 338
TY +V A+ D R
Sbjct: 210 TYNILVKAWCDHR 222
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 125/304 (41%), Gaps = 19/304 (6%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G + EA V E++ FVL+ L+ + G E + + ++ + Y
Sbjct: 171 GGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTY 230
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
S + GK+ +E + L+EM S G + T F I G +++ AYG LKR
Sbjct: 231 SALMVALGKRRDIETVMGLLQEMESLGLRPNIYT---FTICIRILGRAGKIDEAYGILKR 287
Query: 213 SRHLIDKEGI--RAVSFTYLKER-----KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+D G V++T L + K E + + + LL ++
Sbjct: 288 ----MDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFS 343
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+ + +++ + M G+ PD+ TF I A ++ + +L+ MK + V P+L
Sbjct: 344 DHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLH 403
Query: 326 TYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK--GDFHSSSEAFLEF 383
TY ++ L RL R LD L N +S + T Y + F G S +A F
Sbjct: 404 TYNTLICGLL--RLNR-LDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTF 460
Query: 384 KRQR 387
++ +
Sbjct: 461 EKMK 464
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/284 (19%), Positives = 113/284 (39%), Gaps = 12/284 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L K + A +L +K+ PD T L+ ++++G + + W E+ +
Sbjct: 303 LIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADG 362
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
++ V + L+DA ++G +E +D + + Y+ I + +L+
Sbjct: 363 YLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEAL 422
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
M S G + T FI YY + G + + ++K + + + A ++
Sbjct: 423 ELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSL 482
Query: 230 LKERKFFMLGEF---LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
++ + EF L+ GL + +N+L+ Y ++ + M E G
Sbjct: 483 AEQGRLEEAKEFFNGLKKCGLAPD---AITYNILMRCYGKAGRVDDAIKLLSEMEENGCD 539
Query: 287 PDLTTFNIRAVAF---SRMSMFWDLHLSLEHMKHESVGPDLVTY 327
P++ N R+ W + + MK + P +VTY
Sbjct: 540 PEVVIINSLIDTLYKADRVDEAWKM---FQRMKEMKLAPTVVTY 580
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 27/212 (12%)
Query: 143 RNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+NA P+V Y+ + GK G+++ + + +EM+ RG ++ T N I + SL
Sbjct: 815 KNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSL 874
Query: 201 TEMETAYGRLKRSR---------HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
+ Y L LID + L+E K F E + D G
Sbjct: 875 DKAIDLYYDLMSGDFSPTPWTYGPLIDG----LLKLGRLEEAKQFF--EEMLDYGC---- 924
Query: 252 LGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+ N L+N+L+ + +++ F RM + G PDL +++I + D
Sbjct: 925 MPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALH 984
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
E +K + PDLV Y +++ LGR+
Sbjct: 985 YFEELKLSGLDPDLVCYNLMING-----LGRS 1011
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 118/290 (40%), Gaps = 14/290 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + + +A L +K+ G PD T + +G + E ++EE+L
Sbjct: 793 SLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFR 852
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ + ++ + ++ I + + + P Y I K G+LE
Sbjct: 853 GCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEA 912
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+ +EM+ G + N I + FG ++ETA +R + KEGIR +
Sbjct: 913 KQFFEEMLDYGCMPNCPLYN---ILMNGFGKQGDVETACELFRR----MVKEGIRPDLKS 965
Query: 229 Y-LKERKFFMLGE------FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
Y + M+G+ + ++ L D + +NL++ + +++ F M
Sbjct: 966 YSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMR 1025
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
G PDL T+N + M + E ++ + + P++ TY ++
Sbjct: 1026 NRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALI 1075
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 10/175 (5%)
Query: 25 HPKNGDLARKIIRYRKQE------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD 78
+ K+G+ + I + K + V C + + L + + A + N +K GL PD
Sbjct: 447 YGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPD 506
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
T LM CY G V +A + E+ + V +++ L+D + +E +
Sbjct: 507 AITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQ 566
Query: 139 QVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
++ + L P V Y+ ++ GK+G+++ K M++ ++ + N +
Sbjct: 567 RM--KEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLL 619
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ G++ A +L + EG+ PD + ++ C G V +A +EEL S
Sbjct: 934 LMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSG 993
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLEL 167
+ + +++ GR E +S+ D++ RN + P++Y+ I G G +E
Sbjct: 994 LDPDLVCYNLMINGLGRSQRVEEALSLFDEM--RNRGITPDLYTYNALILNLGIAGMVEE 1051
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+E+ +G + T NA I +S G+ Y ++
Sbjct: 1052 AGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKM 1094
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/294 (20%), Positives = 120/294 (40%), Gaps = 30/294 (10%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
A Q++ + +G +PD ST ++ LC A V +A ++++E+ S + V + L
Sbjct: 439 AFQIIKLMMRKGFVPDTSTYSKVITFLCEAMK--VEKAFLLFQEMKSVGVIPDVYTYTIL 496
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+D++ ++G + S D++ Y+ + + K Q+ + MV G
Sbjct: 497 IDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGC 556
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI-----------DKEGIRAVSFTY 229
+ ++ T +A + + G + Y ++ + + D V++
Sbjct: 557 APNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGA 616
Query: 230 L-----KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
L K K E L + + +++++ L+ + K+ + Q F RMS+ G
Sbjct: 617 LIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCG 676
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLS-----LEHMKHESVGPDLVTYGCVVDA 333
+ P + T+ A MF D L L M S P++VTY ++D
Sbjct: 677 YLPTVHTYTSLIDA-----MFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDG 725
>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/309 (20%), Positives = 127/309 (41%), Gaps = 29/309 (9%)
Query: 41 QEGFVDCASLVE-DLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQ 99
E FV+ SL+E + RK K + ++ V+ G + + ALM+ Y + GF+ +
Sbjct: 131 HEMFVEAQSLIELVVSRKGKNSASSVFISLVEMRGTPMCDFLVDALMITYMDLGFIPDVI 190
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159
+ +FV+ ++ +L+D ++ + ++ L V++ ++ F
Sbjct: 191 QCFRLSRKHNFVVPIRGCGNLLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKF 250
Query: 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
K+G + + E+ R + N I Y + G+L + + R +H ++K
Sbjct: 251 CKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNL---DVGF----RLKHHMEK 303
Query: 220 EGIRAVSFTY-------LKERK-------FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
R FTY KE K F+ + E GL D +++ L+ ++
Sbjct: 304 SRTRPDVFTYSALINALCKENKMDGAHRLFYEMCE----RGLIPND---VIFTTLIHGHS 356
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
N ++ ++ + +M G PD+ +N F + ++ M + PD V
Sbjct: 357 RNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKV 416
Query: 326 TYGCVVDAY 334
TY ++D +
Sbjct: 417 TYTTLIDGF 425
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/287 (19%), Positives = 115/287 (40%), Gaps = 35/287 (12%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++L+ L ++ K AH+L + GL+P++ L+ ++ NG + + ++++LS
Sbjct: 314 SALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLS 373
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ + + L++ + + G +I+D + R Y+ I F + G ++
Sbjct: 374 KGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDT 433
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
KEM G +D +A I + G + + E A + R+ G++
Sbjct: 434 ALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRA-------GMKPDDV 486
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
TY M+ F + G G FK+ M G P
Sbjct: 487 TYT-----MMMDAFCKK---GDAQTG--------------FKL------LKEMQSDGHIP 518
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ T+N+ ++ + + L+ M + V PD +TY +++ +
Sbjct: 519 NVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGH 565
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 39/303 (12%)
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
LM + G + +AQ V++E+ S +V + L++ Y ++G N + +
Sbjct: 246 LMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVG--NLDVGFRLKHHMEK 303
Query: 145 ADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ P+V YS I+ K+ +++ EM RG + I +SR G +
Sbjct: 304 SRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDL 363
Query: 203 METAY-------------------------GRLKRSRHLID---KEGIRAVSFTYLKERK 234
M+ +Y G L +R+++D + G+R TY
Sbjct: 364 MKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLID 423
Query: 235 FFMLG-------EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
F G E +++ +L + ++ L+ ++ +R M AG P
Sbjct: 424 GFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKP 483
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGL 347
D T+ + AF + L+ M+ + P++VTY +++ +N D L
Sbjct: 484 DDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLL 543
Query: 348 SKM 350
M
Sbjct: 544 DAM 546
>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
Length = 425
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 109/287 (37%), Gaps = 39/287 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML-CYANNGFVLEAQVVWEELLSS 108
+++ L + LA +L++ + GL PD + LC ++L + EA ++ + S
Sbjct: 55 VIQSLVKAGNVVLAMELLDKMIKTGLEPD-TLLCNVVLDGLGKANMMDEACKLFASMKSM 113
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ L+ + GR E + D++ R Y+ I + K G++E
Sbjct: 114 GCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESA 173
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
LK+M+ + + D T N+ I SR G + R+K+S + VSF
Sbjct: 174 MVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKS-----GVAVNTVSFN 228
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA-GFHP 287
+L G L +FM EA G P
Sbjct: 229 -------------------------------AMLDCCGKAGKVGLAYQFMDEMEARGIKP 257
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ TFN R + + L+ M+ + PD+ TY C+++A+
Sbjct: 258 NSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAF 304
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 62/141 (43%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
+ L PD+ TL +L+ + G A ++E + S ++ + ++D G+ G
Sbjct: 183 KNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGL 242
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+D++ R ++ I+C G+ L+EM S G + D T I
Sbjct: 243 AYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIE 302
Query: 193 YYSRFGSLTEMETAYGRLKRS 213
+++ G++ + +G ++++
Sbjct: 303 AFAKAGNMGKAFEMFGDMEKA 323
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 125/287 (43%), Gaps = 32/287 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L T+ +G PD T LM G + A + E+ F +V + ++
Sbjct: 314 ATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLH 373
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
++ + G +++ ++++++S + L + Y+ I K G+++ ++EM S+G +
Sbjct: 374 SFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNP 433
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D + N I + + E E + L +EG+ A TY ++ L
Sbjct: 434 DICSYNTIIYHLCNNEQMEEAEHMFENLL-------EEGVVANGITY-----NTIIHALL 481
Query: 243 RDVGLGR-KDLGNLLWNLLL-------LSYAGNFKM----KSLQREFM---RMSEAGFHP 287
RD GR +D L ++L +SY G K ++ R + M+E G P
Sbjct: 482 RD---GRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKP 538
Query: 288 DLTTFNIRAVAFSRMSMFWD-LHLSLEHMKHESVGPDLVTYGCVVDA 333
+ ++NI + D L LS + M ++ + PD+VTY +++
Sbjct: 539 NNVSYNILISELCKERRVRDALELS-KQMLNQGLAPDIVTYNTLING 584
>gi|356575210|ref|XP_003555735.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Glycine max]
Length = 609
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 16/203 (7%)
Query: 58 KKPHLAHQLVNTVKSEGLLPDNSTLCALM-----------LCYANNGF-----VLEAQVV 101
K P + +LV+ EGLL + M LC NGF L A V
Sbjct: 333 KDPEVYLKLVHMYIEEGLLEKTLEVVKEMEDADVKVSDCILCTVVNGFSKKRGFLAAVKV 392
Query: 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
+EEL+S + + +++AY R+G +++ + ++ + D YS I +G+
Sbjct: 393 FEELISKGYESGQVTYASVINAYWRLGQYSKAEEVFLEMEQKGFDKCVYAYSTMIVMYGR 452
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
G++ + +M RG + N+ I + R +L ++E + +KR R DK
Sbjct: 453 TGRVRSAMKLVAKMKERGCKPNVWIYNSLIDMHGRDKNLKQLEKLWKEMKRRRVAPDKVS 512
Query: 222 IRAVSFTYLKERKFFMLGEFLRD 244
++ Y K +F +F +
Sbjct: 513 YTSIIGAYSKAGEFETCVKFFNE 535
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 2/176 (1%)
Query: 46 DC--ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
DC ++V +K+ A ++ + S+G T +++ Y G +A+ V+
Sbjct: 370 DCILCTVVNGFSKKRGFLAAVKVFEELISKGYESGQVTYASVINAYWRLGQYSKAEEVFL 429
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
E+ F V S ++ YGR G + ++ ++ R +Y+ I G+
Sbjct: 430 EMEQKGFDKCVYAYSTMIVMYGRTGRVRSAMKLVAKMKERGCKPNVWIYNSLIDMHGRDK 489
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
L+ +E KEM R + D + + I YS+ G + + + LID+
Sbjct: 490 NLKQLEKLWKEMKRRRVAPDKVSYTSIIGAYSKAGEFETCVKFFNEYRMNGGLIDR 545
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/272 (18%), Positives = 108/272 (39%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L++ + ++GL + + +++ N G V +A V E++ L V + ++
Sbjct: 306 AVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVIS 365
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ G + +++ R ++ I+ + G+L+ + L+EMV +G V
Sbjct: 366 GFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDV 425
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T I Y + G++ E + + R + A+S K+ E L
Sbjct: 426 DVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELL 485
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
++ +L +N L+ ++ R M AG D+ T+ +
Sbjct: 486 HEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKS 545
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F H L+ M + + P + TY +++ +
Sbjct: 546 GEFDRAHNMLQEMLDKGIKPSIATYNVLMNGF 577
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 108/280 (38%), Gaps = 40/280 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
A +L ++ GL D T AL+ LC A G + EA V +E++ + V + L
Sbjct: 376 ARRLFEEMQKRGLAADRVTHTALINGLCRA--GELKEADRVLQEMVDKGLDVDVVTYTVL 433
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+D Y + G E + +++ R Y+ KQG + L EM ++G
Sbjct: 434 IDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGL 493
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
++ T N+ I +FG+L + ++ + H D + T K GE
Sbjct: 494 ELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKS------GE 547
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
F R N+L +L + G P + T+N+ F
Sbjct: 548 FDR--------AHNMLQEML---------------------DKGIKPSIATYNVLMNGFC 578
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY-LDKRL 339
LE M ++V P++VTY ++ Y +DK +
Sbjct: 579 MSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNM 618
>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 784
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/323 (19%), Positives = 122/323 (37%), Gaps = 39/323 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++++ L +K K + A L+ +K+ GLLP+ +T L+ Y G++ EA V + + +
Sbjct: 252 TILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQN 311
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV----------------- 151
+ + V + L+ + G +E + D++ N LLP+V
Sbjct: 312 NVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEM--ENLKLLPDVVTYNTLINGCFDCSSSL 369
Query: 152 --------------------YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
Y+ + + K+G+++ N L++M GFS D T N I
Sbjct: 370 KGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLI 429
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
Y + G L+E + R ++ + + T ERK + L
Sbjct: 430 NGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYF 489
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ + + L++ Y + K + + M E P + T+N
Sbjct: 490 VDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDK 549
Query: 312 LEHMKHESVGPDLVTYGCVVDAY 334
L + + PD TY ++ Y
Sbjct: 550 LNELLESGLVPDETTYNTIILGY 572
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 56/279 (20%), Positives = 106/279 (37%), Gaps = 47/279 (16%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L+ +K PDN + ++ G + EA+ + ++ ++ + + + L+ Y
Sbjct: 234 LIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYC 293
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
++G E +ID ++ N +LP+V Y+ I K G+++ EM + D
Sbjct: 294 KLGWLKEAAQVIDLMAQNN--VLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPD 351
Query: 184 SATGNAFII-YYSRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTYLKERKFFMLG 239
T N I + SL E LIDK +G++ + TY
Sbjct: 352 VVTYNTLINGCFDCSSSLKGFE-----------LIDKMEGKGVKPNAVTY---------- 390
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
N+++ Y KM + E +M E+GF PD TFN +
Sbjct: 391 ------------------NVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGY 432
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+ + ++ M + + + VT ++ +R
Sbjct: 433 CKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGER 471
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 122/305 (40%), Gaps = 52/305 (17%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLS 107
L+ L +K+K H A L+N + L P T +L+ C N+ LE+ L++
Sbjct: 410 LICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVND---LESAYRLLSLMN 466
Query: 108 SSFVLSVQ-VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ ++ Q S +D + G E ++ D V + +Y+ I + K G+++
Sbjct: 467 ENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKID 526
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE---GIR 223
+ + L+ M++ +S T N I E ++K + L+ K G++
Sbjct: 527 VAYSLLERMLNDACLPNSYTYNVLI----------EGLCKEKKMKEASSLVAKMLTMGVK 576
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
TY ++GE L+D G F + F M
Sbjct: 577 PTVVTYT-----ILIGEMLKD---------------------GAFDHA--LKVFNHMVSL 608
Query: 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG--- 340
G+ PD+ T+ A+ M ++ + M E + PDLVTY ++D Y RLG
Sbjct: 609 GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGY--ARLGLTH 666
Query: 341 RNLDF 345
R DF
Sbjct: 667 RAFDF 671
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/341 (21%), Positives = 126/341 (36%), Gaps = 56/341 (16%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVL 112
GRK + A L N +K +G P+ T L+ LC N + EA+ + E+ +
Sbjct: 313 GRKVE---ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENK--MDEARKMLSEMSEKGLIP 367
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
SV + L+D Y + G ++ I+D + + Y+ I K+ ++ L
Sbjct: 368 SVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALL 427
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY------------------------- 207
+M+ R S T N+ I + + ++E+AY
Sbjct: 428 NKMLERKLSPSLITYNSLIHGQCK---VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484
Query: 208 ---GRLKRSRHLIDK---EGIRAVSFTYLK-----------ERKFFMLGEFLRDVGLGRK 250
GR++ + L D +G++A Y + + +L L D L
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN- 543
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+ +N+L+ KMK +M G P + T+ I + F
Sbjct: 544 ---SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALK 600
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
HM PD+ TY + AY + + +D ++KMN
Sbjct: 601 VFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMN 641
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 37/218 (16%)
Query: 118 SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177
S ++D + + G F+E +++ ++ N L Y+ +S + K G+ E + L+EM S
Sbjct: 413 STVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMAS 472
Query: 178 RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM 237
G D T NA + Y + G E++ + +KR H+
Sbjct: 473 VGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKR-EHV--------------------- 510
Query: 238 LGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
L NLL ++ L+ Y+ K F AG D+ ++
Sbjct: 511 --------------LPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALI 556
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
A + + ++ M E + P++VTY ++DA+
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAF 594
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 120/303 (39%), Gaps = 13/303 (4%)
Query: 39 RKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA 98
RK E ++++ LGR K +A ++ T S G AL+ Y +G EA
Sbjct: 228 RKNEQGKLASAMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEA 287
Query: 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGC-FNEIISIID--QVSCRNADLLPEVYSRA 155
V+ + ++ + ++DA G+ G F ++ D Q +C D + ++
Sbjct: 288 ISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRI--TFNSL 345
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
++ + G E N EM +R D + N + + G + ++ R
Sbjct: 346 LAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRI 405
Query: 216 LIDKEGIRAVSFTYLKERKF----FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+ + V + K +F + GE +R + + L + +N LL Y + +
Sbjct: 406 MPNVVSYSTVIDGFAKAGRFDEALNLFGE-MRYLNIA---LDRVSYNTLLSIYTKVGRSE 461
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M+ G D+ T+N + + + ++ MK E V P+L+TY ++
Sbjct: 462 EALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLI 521
Query: 332 DAY 334
D Y
Sbjct: 522 DGY 524
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 13/175 (7%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
D+ R++ ++ V +L+ G++ K ++ +K E +LP+ T L+ Y
Sbjct: 465 DILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGY 524
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
+ G EA V+ E S+ V + S L+DA + G +S+ID+++
Sbjct: 525 SKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNV 584
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
Y+ I FG+ +E S D + G + S LTE E
Sbjct: 585 VTYNSIIDAFGRSATMER-------------SADYSNGGSLPFSSSALSELTETE 626
>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 426
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 35/206 (16%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ G+ K A L++ +++ G++PD + AL+ Y N LEA V+ E+
Sbjct: 84 SMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYVENKKFLEALSVFAEMREI 143
Query: 109 SFVLSVQVLSDLMDAYGRIG-----------------------------------CFNEI 133
+L + + ++D YG++G F E
Sbjct: 144 KCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLRVYGDAELFGEA 203
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I + + ++ + Y+ + +GK + E N ++EM SRG ++ T + I
Sbjct: 204 IHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISI 263
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDK 219
+ + G L + +L+ S ID+
Sbjct: 264 WGKVGKLDRAAILFEKLRSSGIEIDQ 289
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 65/152 (42%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L +++ G+ P+ + L+ Y + EA ++ +
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 212 RKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLD 271
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+++ S G +D I+ Y R G
Sbjct: 272 RAAILFEKLRSSGIEIDQVLYQTMIVAYERAG 303
>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Cucumis sativus]
Length = 707
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 120/299 (40%), Gaps = 39/299 (13%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V SL+ GR ++P A ++ + +K P+ + ALM Y +NG++
Sbjct: 269 KRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYL 328
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
+A + E+ +V + L+ A GR G I S++ R L + A
Sbjct: 329 PQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSA 388
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I + G+ E N + M ++ DS T F I S +++ E A
Sbjct: 389 IGSYMNIGEYEKAINLYRSMENKTTKPDSVT---FTILISGCCRMSKYEEA--------- 436
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
+ KE + D+ R L + +++ ++ +Y+ ++ +
Sbjct: 437 -----------LCFFKE---------MLDL---RIPLSSEIYSSMICAYSKQGQLVKAES 473
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F + +G PDL T+ A+S M+ + + M+ ++ D + ++ A+
Sbjct: 474 LFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAF 532
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 135/337 (40%), Gaps = 33/337 (9%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR- 126
+T+ +EG+ P+ + AL+ YA++G EA V++E+ S F V + L+ +GR
Sbjct: 231 STMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRS 290
Query: 127 --IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
E+ ++ + C+ +L+ Y+ + +G G L + L+EM G +
Sbjct: 291 QQPARAREVFDMMKRNKCK-PNLVS--YNALMDAYGSNGYLPQAVDILREMEQDGIHPNV 347
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLK-RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
+ + RFG +++ + R HL A+ + +GE+ +
Sbjct: 348 VSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIG-------SYMNIGEYEK 400
Query: 244 DVGLGRK------DLGNLLWNLLLLSYAGNFKMKSLQRE---FMRMSEAGFHPDLTTFNI 294
+ L R ++ + +L+ +G +M + F M + ++
Sbjct: 401 AINLYRSMENKTTKPDSVTFTILI---SGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSS 457
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLD- 353
A+S+ +K PDLVTY +++AY + + +M +
Sbjct: 458 MICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANN 517
Query: 354 ---DSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQR 387
DS S + +AF KG+ S+ E +++
Sbjct: 518 IQLDSIACSA---LMKAFNKGNQASNVLILAEIMKEK 551
>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 108/274 (39%), Gaps = 26/274 (9%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T L+ +G + A+ + ++ + V S LMD Y + N+ +
Sbjct: 267 PDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHV 326
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+S Y+ I+ GK ++ + KEM +G + D+ T
Sbjct: 327 FSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVT---------- 376
Query: 197 FGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTY-------LKER---KFFMLGEFLR 243
+ SL + GR+ + L+D+ GI A TY K K L + ++
Sbjct: 377 YNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIK 436
Query: 244 DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
D G+ +N+L+ ++K+ Q F + G+ + T+NI +
Sbjct: 437 DQGIQP---SMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEG 493
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
+F + + L M++ + PD VTY ++ A K
Sbjct: 494 LFNEAEVLLSKMENNGIIPDAVTYETIIRALFRK 527
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + A LV +K +G+ P T L+ G + AQ V+++LL
Sbjct: 414 SLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIK 473
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ ++ + +++ + G FNE ++ ++ N ++P+ Y I ++ + E
Sbjct: 474 GYSVNAWTYNIMINGLCKEGLFNEAEVLLSKM--ENNGIIPDAVTYETIIRALFRKDENE 531
Query: 167 LMENTLKEMVSRGF 180
E L+EM+ RG
Sbjct: 532 KAEKLLREMIIRGL 545
>gi|449444598|ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Cucumis sativus]
Length = 1062
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 103/250 (41%), Gaps = 4/250 (1%)
Query: 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102
G V + +V L K +A +V + GL D + G + A ++
Sbjct: 737 GAVAVSRIVNTLTVGGKHRVAENVVRASLNCGLELDTVAFNTFIKAMLEGGKLHFASRIY 796
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFG 160
E +++ V S+Q + ++ YGR ++ + + + + R++ L P+ Y+ ISC+G
Sbjct: 797 EHMIALGIVPSIQTYNTMISVYGRGRKLDKAVEMFN--AARSSGLSPDEKAYTNLISCYG 854
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K G+ KEM+ G + N + Y+ G E E +++ + D
Sbjct: 855 KAGKTHEASLLFKEMLEEGVKPGMVSYNIMVNVYANAGLHEETENLLKAMEQDAIVPDSF 914
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
++ Y + K+ + + + ++LLL + A ++ +R + +
Sbjct: 915 TYFSLIRAYTQSCKYSEAEKIINSMQEKGIPTTCAHYDLLLSALAKAGMIRKAERVYDEL 974
Query: 281 SEAGFHPDLT 290
AG PD+T
Sbjct: 975 QTAGLSPDVT 984
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 140/353 (39%), Gaps = 24/353 (6%)
Query: 1 METFSL--SLHGSFKFKR----FNVPSH-------QTHPKNGDLAR--KIIRYRKQEGFV 45
METFS L G K + ++ P H + + NGD+++ KI+++ +G V
Sbjct: 576 METFSFMFKLDGGEKNESTIVGYDQPDHIALDMILRLYLANGDVSKRNKILKFIIGKGGV 635
Query: 46 DCAS-LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
S LV +L R+ A L + D++ + +L+ Y + +A V
Sbjct: 636 TVVSQLVANLIREGDSLKAGTLTKELLKLDCRLDDAIIASLISLYGKERKINQAAEVLAA 695
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
+ +S S + ++DAY + E ++ ++ + DL SR ++ G+
Sbjct: 696 VANS--CTSTLIFGSMIDAYIKCDKAEEASTLYKELIEKGYDLGAVAVSRIVNTLTVGGK 753
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ EN ++ ++ G +D+ N FI G L Y + + +
Sbjct: 754 HRVAENVVRASLNCGLELDTVAFNTFIKAMLEGGKLHFASRIYEHMIALGIVPSIQTYNT 813
Query: 225 VSFTYLKERKFFMLGEFL---RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ Y + RK E R GL + + L+ Y K F M
Sbjct: 814 MISVYGRGRKLDKAVEMFNAARSSGLSPDEKA---YTNLISCYGKAGKTHEASLLFKEML 870
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
E G P + ++NI ++ + + L+ M+ +++ PD TY ++ AY
Sbjct: 871 EEGVKPGMVSYNIMVNVYANAGLHEETENLLKAMEQDAIVPDSFTYFSLIRAY 923
>gi|359490014|ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Vitis vinifera]
Length = 494
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 118/278 (42%), Gaps = 37/278 (13%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G V +A + ++ + F LS+ + +++A G +G E +I ++ L VY
Sbjct: 37 GDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLRVY 96
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + ++G LEL + L EM + G + AT A + YY R G L ++ G + R
Sbjct: 97 NVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSR 156
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK-------------DLGNLLWNL 259
+G SF Y K ++G + RD G+ +K L ++N
Sbjct: 157 -------DGFGPDSFVYSK-----VIGVY-RDNGMWKKAMEIVREIREMGVSLDKRIYNS 203
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE---HMK 316
++ ++ ++ F +M E G PD+ T+N + D+ +LE M+
Sbjct: 204 IIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAG---DVGKALELFSKMQ 260
Query: 317 HESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD 354
E + PD + ++ RLG + + K N ++
Sbjct: 261 EEGLYPDPKIFITIIS-----RLGEQGKWDVIKRNFEN 293
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/279 (17%), Positives = 115/279 (41%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RK LA +++ + + G+ + +T AL+ Y G + + V E+ F
Sbjct: 105 RKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSF 164
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
V S ++ Y G + + + I+ ++ L +Y+ I FGK G+L ++M
Sbjct: 165 VYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKM 224
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
G D T N+ I ++ + G + + + +++ D + + ++ K+
Sbjct: 225 QEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKW 284
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
++ ++ ++ +L+ Y + + + + G P + F +
Sbjct: 285 DVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVL 344
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
A A+++ + L+ M+ E + P+L+ +++A+
Sbjct: 345 ANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAF 383
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/323 (18%), Positives = 119/323 (36%), Gaps = 61/323 (18%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+LV+ GR + + ++ + +G PD+ ++ Y +NG +A + E+
Sbjct: 133 ALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREM 192
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS------------------CRNADLL-- 148
L ++ + ++D +G+ G +E + + +++ C+ D+
Sbjct: 193 GVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKA 252
Query: 149 ---------------PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
P+++ IS G+QG+ ++++ + M RG A +
Sbjct: 253 LELFSKMQEEGLYPDPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDI 312
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253
Y ++G E LK EGI+ + F +L GL + +
Sbjct: 313 YGQYGRFQGPEECISALK-------SEGIQPSASM------FCVLANAYAQQGLCEQTVK 359
Query: 254 NLLW--------NLLLLSYAGN-FKMKSLQRE----FMRMSEAGFHPDLTTFNIRAVAFS 300
L NL++L+ N F + E + + + G PD+ T++ A
Sbjct: 360 VLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSVYHHIKDTGISPDVVTYSTLMKACI 419
Query: 301 RMSMFWDLHLSLEHMKHESVGPD 323
R F + E M+ PD
Sbjct: 420 RARKFDKVPEIYEEMESAGCTPD 442
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A LV+ G+ + + ++ +KSEG+ P S C L YA G + V + + +
Sbjct: 307 AILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQQGLCEQTVKVLQLMET 366
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
++ +L+ L++A+G G E +S+ + ++ + P+V YS + + +
Sbjct: 367 EGIEPNLIMLNMLINAFGIAGRHLEALSVYHHI--KDTGISPDVVTYSTLMKACIRARKF 424
Query: 166 ELMENTLKEMVSRGFSVD 183
+ + +EM S G + D
Sbjct: 425 DKVPEIYEEMESAGCTPD 442
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/322 (18%), Positives = 129/322 (40%), Gaps = 26/322 (8%)
Query: 30 DLARKIIRYRKQEGFV----DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A+++ K +G + ++L+ K + L + + +G+ PD T L
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVL 313
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ G V EA+ + E ++ V ++ + L+D + +G N + + +
Sbjct: 314 IDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGL 373
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+ Y+ I+ + K +++ N EM+ G S + T + + G + + +
Sbjct: 374 EPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKK 433
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL--------- 256
+G +K G+ A S Y F+ G D +L N L
Sbjct: 434 LFGVMKTY-------GVSANSQIY----GIFLDGLCKNDCLFEAMELFNELKSYNFKLNI 482
Query: 257 --WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
++ L+ K+++ F ++S+ G PD+ T+NI F ++ + ++ E
Sbjct: 483 ENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEK 542
Query: 315 MKHESVGPDLVTYGCVVDAYLD 336
M+ PD++ Y ++ + +
Sbjct: 543 MEENGCTPDIIAYNTLLCGFCE 564
>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
Length = 899
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/339 (19%), Positives = 138/339 (40%), Gaps = 25/339 (7%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SLV+ + A L+ + +EG D+ T L+ + EA + +++ S
Sbjct: 511 SLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLS 570
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++ + ++ + G + S+ +++ Y+ IS + K GQ+E
Sbjct: 571 GVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEA 630
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
E+ + EM G + D T N FI + G + M+ A+ LKR +ID +T
Sbjct: 631 EHLIGEMERDGVAPDVVTYNVFI---NGCGHMGYMDRAFSTLKR---MIDAS-CEPNYWT 683
Query: 229 YLKERKFFMLGEFLRD--VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
Y + +L FL+ V D +WN + ++ ++ + RM + G +
Sbjct: 684 Y-----WILLKHFLKMSLVDAHYVDTSG-MWNWI--------ELDTVWQLLERMVKHGLN 729
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL-GRNLDF 345
P T++ F + + + + +HM+ + + P+ Y ++ D +L G+ + F
Sbjct: 730 PTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSF 789
Query: 346 GLSKMNLDDSPVVSTDPYVFEAF-GKGDFHSSSEAFLEF 383
+ P + + Y+ +GD+ + F +
Sbjct: 790 VTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDL 828
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/296 (19%), Positives = 113/296 (38%), Gaps = 45/296 (15%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ L + +K H A L+ ++ +G+ P T L+ A ++E +
Sbjct: 408 SSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQ 467
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV-YSRAISCFGKQGQLE 166
+ Q + L A + G E S + R +L +V Y+ + F K G +
Sbjct: 468 NGLTPDEQAYNVLTHALCKSGRAEEAYSFL----VRKGVVLTKVTYTSLVDGFSKAGNTD 523
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++MV+ G DS T + + + L E + ++ S G++
Sbjct: 524 FAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLS-------GVKCNI 576
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
Y ++ E +++ G+ D ++N M +G
Sbjct: 577 VAYT-----IIISEMIKE---GKHDHAKSMFN--------------------EMISSGHK 608
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY-----GCVVDAYLDK 337
P TT+ + ++ ++ + + M+ + V PD+VTY GC Y+D+
Sbjct: 609 PSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDR 664
>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 870
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/324 (20%), Positives = 140/324 (43%), Gaps = 22/324 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L++ + S G+ PD T L+ Y + G V EA+ + E++ + + L++
Sbjct: 382 ARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLN 441
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF-S 181
+ + G +E ++ +++ ++ L + ++ + G+LE + EM + G S
Sbjct: 442 SLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNS 501
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF-MLGE 240
+ A ++ S+ + T + LI+ G+ V ++KF M+ +
Sbjct: 502 LGKENPVAGLV-----NSIHNVSTNVPDVITYTTLIN--GLCKVGKLEEAKKKFIEMMAK 554
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L ++ ++ +L++ K+ S R M G L T+N +
Sbjct: 555 NLHP--------DSVTYDTFVLNFCKQGKISSALRVLKDMERNGCSKTLQTYNSLILGLG 606
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD---SPV 357
++++ ++ M+ + PD+ TY +++ + ++ L +M LD SP
Sbjct: 607 SKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEM-LDKGVVSPN 665
Query: 358 VSTDPYVFEAFGK-GDFHSSSEAF 380
VS+ + +AF K GDF + E F
Sbjct: 666 VSSFKILIKAFCKSGDFKVACELF 689
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 116/291 (39%), Gaps = 16/291 (5%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
++ +PH L + G+ P+ T L+ + + A+ +++++ +
Sbjct: 128 QQNRPHYVTSLYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKF 187
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
+ L+ + R G + + +D N + + VY+ +S F KQ + E ++ M
Sbjct: 188 TVGILVRGFCRAGRTKQALEFVDGKMGGNVNRV--VYNTLVSSFCKQDMNDEAEKLVERM 245
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI---RAVSFTYLKE 232
+G D T N+ I R G + E R+ R + + G+ V+F L
Sbjct: 246 TEKGLLPDVVTFNSRISALCRAGKVFEAS----RIFRDMQMDGELGLPKPNVVTFN-LML 300
Query: 233 RKFFMLG--EFLRDVGLGRKDLGNLL----WNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+ F G E R + K GN + +N LL N K+ + M E G
Sbjct: 301 KGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIE 360
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
P++ ++NI R M D ++ M V PD VTY ++ Y K
Sbjct: 361 PNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSK 411
>gi|413917168|gb|AFW57100.1| hypothetical protein ZEAMMB73_992270 [Zea mays]
Length = 442
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 121/311 (38%), Gaps = 47/311 (15%)
Query: 40 KQEGFVDCASLVEDLGRK-KKPHLAHQLVNT---VKSEGLLPDNSTLCALMLCYANNGFV 95
KQ+ + L D+ R +K L +L +T ++ + D + ++ C V
Sbjct: 152 KQKEIIPDKYLFLDMLRTYQKCGLLEKLADTYYWIRKSQVKCDEAMYNCIINCCGRAIPV 211
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN-ADLLPEVYSR 154
E +++E+L + + + L+D YG+ G FN + + AD++ Y+
Sbjct: 212 DELSRIFDEMLQQGHLANTVTFNVLLDIYGKAGLFNRAEKVFIMARKQGLADIIS--YNT 269
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
I+ + K G M ++ M GF V N + Y + G L E + ++KR++
Sbjct: 270 IIAAYAKGGNFLSMNYFVQMMQDAGFPVSLEAYNCMLDAYGKAGRLEEFASVLQKMKRAK 329
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
D +TY N+++ Y ++ +
Sbjct: 330 CKFDH-------YTY----------------------------NIMINIYGRRGWIQDVS 354
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + G PDL ++N A+ M D ++ M+ + + PD VTY ++ A
Sbjct: 355 NVLAELKDRGVEPDLYSYNTLIKAYGIARMPEDAVKLMQEMRVKGISPDRVTYANLIAA- 413
Query: 335 LDKRLGRNLDF 345
L RN +F
Sbjct: 414 ----LQRNENF 420
>gi|413917024|gb|AFW56956.1| hypothetical protein ZEAMMB73_276172 [Zea mays]
Length = 666
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 3/224 (1%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
YS I + K G LE + + ++ MVS G ++ + + G ++E+ + + +
Sbjct: 336 YSYLIRSYCKMGNLEKVWHYIEAMVSHGIEINCYIVGYLLQCLKKLGMISEVIVHFQKFR 395
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+D Y K + L ++ G + + L+ Y +M+
Sbjct: 396 DLGLHLDGVLYNIAMDAYCKLGNMNEAVKLLTEMMAGGLVPDKIHYTCLINGYCLKGEME 455
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ + F +M + PD+ T+NI A +SR ++ LEHM ++ + P+ +TYG +
Sbjct: 456 NAWQVFEQMLKENVKPDVVTYNILASGYSRNGTVIKVYDLLEHMMNQGLEPNSLTYGVAI 515
Query: 332 DAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHS 375
++ G NL N+ + + ++ + G HS
Sbjct: 516 TSFCR---GGNLSEAEVLFNIVEEKGIDNIELLYSSMVCGYLHS 556
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 56/281 (19%), Positives = 118/281 (41%), Gaps = 18/281 (6%)
Query: 67 VNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126
+ + S G+ + + L+ C G + E V +++ L + + MDAY +
Sbjct: 356 IEAMVSHGIEINCYIVGYLLQCLKKLGMISEVIVHFQKFRDLGLHLDGVLYNIAMDAYCK 415
Query: 127 IGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
+G NE + ++ ++ L+P+ Y+ I+ + +G++E ++M+ D
Sbjct: 416 LGNMNEAVKLLTEM--MAGGLVPDKIHYTCLINGYCLKGEMENAWQVFEQMLKENVKPDV 473
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
T N YSR G++ ++ Y L+ H+++ +G+ S TY F G L +
Sbjct: 474 VTYNILASGYSRNGTVIKV---YDLLE---HMMN-QGLEPNSLTYGVAITSFCRGGNLSE 526
Query: 245 VG-----LGRKDLGN--LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
+ K + N LL++ ++ Y + F+R+++ G D + +
Sbjct: 527 AEVLFNIVEEKGIDNIELLYSSMVCGYLHSGWTDHAHALFLRVAKQGNMVDQFSCSKLIN 586
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+ M ++V PD+++Y ++ AY R
Sbjct: 587 GLCIDEKVEEASTVCSMMLEKNVIPDVISYSKLISAYCQNR 627
>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
Length = 519
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 82/189 (43%), Gaps = 30/189 (15%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+YS+ IS G++GQ+ + +M + G D++ N+ I
Sbjct: 125 IYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLI------------------- 165
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
HL ++ +A++ LG F + + R + +N+LL ++A
Sbjct: 166 --GAHLHSRDKSKALAKA---------LGYFEKMKCIARCQPTIVTYNILLRAFAQAGDT 214
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
K + F + E+ PD+ T+N A+ + M ++ L MK + PD++T+ +
Sbjct: 215 KQVDILFKDLDESVVSPDIYTYNGVLDAYGKNGMIKEMESVLLRMKSKQCRPDVITFNIL 274
Query: 331 VDAYLDKRL 339
+D+Y K++
Sbjct: 275 IDSYGRKQI 283
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 23/220 (10%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+ ++R +++ S++ + G+ + A +V ++ G P+ T L++ YA+
Sbjct: 292 KSLLRSKERPTHPTFNSMITNYGKARLREKAEYVVKKMEELGYKPNYVTQECLIMMYAHC 351
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV--SC-----RNA 145
V +A+ V++EL+SS + + L+ ++DAY G E ++D C
Sbjct: 352 DCVSKARQVFDELVSSQNKVQLSSLNSMLDAYCMNGLHTEADQLLDTALQKCVVPNGSTY 411
Query: 146 DLLPEVYSRA---------ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
LL + Y+RA + KQG + + L + + G S + I S+
Sbjct: 412 KLLYKAYTRANDKVLVQKLLKRMNKQGIVPNKKFFLDALEAFGTSERKPRTSPAINSASK 471
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF 236
G+ + ++ GR+ HLI R V+ YL+ ++F
Sbjct: 472 LGADSAGDSESGRI----HLI---CTRTVNIVYLELQQFL 504
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 2/213 (0%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T ++ Y NG + E + V + S V + L+D+YGR F+++ +
Sbjct: 231 PDIYTYNGVLDAYGKNGMIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQV 290
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ ++ I+ +GK E E +K+M G+ + T I+ Y+
Sbjct: 291 FKSLLRSKERPTHPTFNSMITNYGKARLREKAEYVVKKMEELGYKPNYVTQECLIMMYAH 350
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN-L 255
+++ + L S++ + + ++ Y + L D L + + N
Sbjct: 351 CDCVSKARQVFDELVSSQNKVQLSSLNSMLDAYCMN-GLHTEADQLLDTALQKCVVPNGS 409
Query: 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
+ LL +Y +Q+ RM++ G P+
Sbjct: 410 TYKLLYKAYTRANDKVLVQKLLKRMNKQGIVPN 442
>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
gi|224029903|gb|ACN34027.1| unknown [Zea mays]
gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
Length = 819
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 116/320 (36%), Gaps = 49/320 (15%)
Query: 21 SHQTHPKNGDLARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
SH H + A + + KQ G V SL+ GR +P A ++ N ++
Sbjct: 377 SHGMHTE----ALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACK 432
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P+ + AL+ Y + G + EA + E+ V +S L+ A GR +I I
Sbjct: 433 PNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDII 492
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ R L Y+ I + G + M + D+ T N I +
Sbjct: 493 LAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCK 552
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
G Y++ KFF E + D+ + L +
Sbjct: 553 LGR-----------------------------YVESLKFF---EDMLDLNI---HLTKEV 577
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF---WDLHLSLE 313
++ ++ SY K+ F M E G PD+ T+ A+S + WDL +
Sbjct: 578 YSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDL---FK 634
Query: 314 HMKHESVGPDLVTYGCVVDA 333
M++ PD + +++A
Sbjct: 635 EMENNGTQPDAIVCSSLMEA 654
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 133/330 (40%), Gaps = 25/330 (7%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
+EG+ P+ + AL+ YA++G EA ++ L + + + L++AYGR
Sbjct: 358 AEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPE 417
Query: 132 EIISIIDQVSCRNADLLPEV-YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
+ + +++ +NA +V Y+ I +G G L+ + L EM G D + +
Sbjct: 418 KAREVFNEMR-KNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTL 476
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE-RKFFMLGEFLRDVGL-- 247
+ R LT+++ K GI+ + Y + LG++ + + L
Sbjct: 477 LTACGRCKQLTKIDIILAAAK-------SRGIQLNTVAYNSGIGSYLSLGDYKKALVLYT 529
Query: 248 ----GRKDLGNLLWNLLLLSYAGNFKM----KSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
G + +N+L+ +G+ K+ +SL + F M + H ++ ++
Sbjct: 530 SMRAGNVKPDAVTYNILI---SGSCKLGRYVESL-KFFEDMLDLNIHLTKEVYSSVICSY 585
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPVV 358
+ + + MK PD++TY ++ AY D R D N P
Sbjct: 586 VKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDA 645
Query: 359 STDPYVFEAFGKGDFHSSSEAFLEFKRQRK 388
+ EA KG +EF +Q+K
Sbjct: 646 IVCSSLMEALNKGGQPERVLQLIEFMKQKK 675
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/221 (19%), Positives = 91/221 (41%), Gaps = 6/221 (2%)
Query: 118 SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEM 175
+ L+ A+ R G + I+I+D + + A + P Y+ I+ G G + K+M
Sbjct: 192 NSLIHAHARAGQWCWAINIMDDM--QRAAIPPSRTTYNNVINACGAAGNWKKALELCKKM 249
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
G D T N + + ++ + +K S+ D + V +K +
Sbjct: 250 TENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLY 309
Query: 236 FMLGEFLRDVGLGRKDLGN--LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
E + R + + ++ SY+ + ++ + F M G P++ ++N
Sbjct: 310 GEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYN 369
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
A++ M + + + +K + PD+V+Y +++AY
Sbjct: 370 ALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAY 410
>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
Length = 665
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 119/282 (42%), Gaps = 32/282 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + N +K GL PD + +L+ Y + +A+ V+ ++ +S + + L+D
Sbjct: 242 ALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALID 301
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLELMENTLKEMVSRGF 180
AYG G E + ++ ++ + P+V S + ++ G+ Q+ +E L+ SRG
Sbjct: 302 AYGSAGMLKEAVGLLHEM--EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGI 359
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERKF 235
+++ N+ I Y FG + Y ++ S D AV++ L K K+
Sbjct: 360 DLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPD-----AVTYNILISGSSKLGKY 414
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
F D+ + +S K+ + F M ++G PD+ T+
Sbjct: 415 TESLRFFEDMVDSK------------VSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTL 462
Query: 296 AVAFSRMSMF---WDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
A++ + WDL + M+ + PD + +++A+
Sbjct: 463 IQAYNAGGGWKRAWDL---FKEMEVNGIPPDAIICSSLMEAF 501
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 69/348 (19%), Positives = 130/348 (37%), Gaps = 75/348 (21%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC-- 129
+EG+ P+ +L+ YA+ G EA ++ + + + + L++AYGR
Sbjct: 216 AEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPE 275
Query: 130 -FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN 188
E+ + + + SC+ + Y+ I +G G L+ L EM G D + +
Sbjct: 276 KAREVFNKMKKNSCKPNKV---SYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSIS 332
Query: 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG 248
+ R +T +ET + E R G+
Sbjct: 333 TLLAACGRCRQITRIET--------------------------------ILEAARSRGI- 359
Query: 249 RKDLGNLLWNLLLLSYA--GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW 306
DL + +N + SY G+++ K+L+ + M E+ PD T+NI S++ +
Sbjct: 360 --DLNTVAYNSGIKSYLSFGDYE-KALEL-YTSMRESNVKPDAVTYNILISGSSKLGKYT 415
Query: 307 -----------------------DLHLSLEHMKHESVGPDLVTYGCVVDAY-LDKRLGRN 342
+ + MK PD++TY ++ AY R
Sbjct: 416 ESLRFFEDMVDSKVSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRA 475
Query: 343 LDFGLSKMNLDDSP---VVSTDPYVFEAFGKGDFHSSSEAFLEFKRQR 387
D +M ++ P ++ + + EAF KG +EF +++
Sbjct: 476 WDL-FKEMEVNGIPPDAIICSS--LMEAFNKGGEPERVLQLMEFMKKK 520
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 107/283 (37%), Gaps = 18/283 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ-VLSDLM 121
A +L + G+ PD T ++L NG + + E++ + V S L+ ++
Sbjct: 100 ALELCKKMTENGVGPDLVTH-NIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIII 158
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRG 179
+IG E I + + + R P+V Y+ + + GQ+E + MV+ G
Sbjct: 159 HCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEG 218
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA--VSFT-----YLKE 232
+ N+ + Y+ G E + +LI K G+R VS+T Y +
Sbjct: 219 VKPNIVAYNSLLGAYASRGMHREALAIF-------NLIKKNGLRPDIVSYTSLLNAYGRS 271
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ E + + +N L+ +Y +K M + G PD+ +
Sbjct: 272 AQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSI 331
Query: 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ A R + LE + + + V Y + +YL
Sbjct: 332 STLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYL 374
>gi|294462101|gb|ADE76603.1| unknown [Picea sitchensis]
Length = 290
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/272 (18%), Positives = 101/272 (37%), Gaps = 36/272 (13%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L ++ G + C L+ + G + +A V+ + F +V + +MD
Sbjct: 4 AEELYMEMRRRGSIFSEPVFCNLIGGFFKAGEIYKALDVFH-FIPEKFERTVMSYNAVMD 62
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ + G E + +D++ N Y+ IS + QG+L+ E + M +G
Sbjct: 63 GFCKAGQLQEALQYLDKLPENNLGPNATSYTILISGYITQGKLQEAEKLFRSMAEKGCIP 122
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ N + Y + G E E + L
Sbjct: 123 DACVYNTLLDAYFKEGMFAEAE-----------------------------------KLL 147
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
++ ++ ++ + +L+ + KM+ + F M EAG PD+T +N +
Sbjct: 148 EEMVTEHREPDSVTYTMLINEFTKQGKMEGALKIFANMIEAGLKPDVTVYNKWFGLLCKE 207
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
S F + + M PD+ TY + + +
Sbjct: 208 SKFDEAQKLFQRMVDGGQNPDVGTYDILTEGF 239
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/366 (21%), Positives = 136/366 (37%), Gaps = 36/366 (9%)
Query: 64 HQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123
H LV V + D+S L+ + V EA++V ++ + F + + + L+D
Sbjct: 4 HGLVRKVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDV 63
Query: 124 YGRIGCFNEIISIIDQVSCRNA-----------------------DLLPE----VYSRAI 156
YG+ G + + D + RN +PE ++ +
Sbjct: 64 YGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMV 123
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
S F ++ + E + +M S F ++ + + + + L+ +G + +SR+
Sbjct: 124 SGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYS 183
Query: 217 IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQR 275
+D A+ Y K R D+ D+ N++ WN L+ Y N
Sbjct: 184 LDVYMGSALVDMYSKCRVVASAQRAFDDM-----DVRNIVSWNSLITCYEQNGPAGKALE 238
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD-LHLSLEHMKHESVGPDLVTYGCVVDAY 334
F+RM G PD T A A + +S + L + MKH+ DLV +VD Y
Sbjct: 239 VFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMY 298
Query: 335 LDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKL 394
R +M L D VVS V ++ F + ++ L
Sbjct: 299 AKCRRVNEARLVFDRMPLRD--VVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNAL 356
Query: 395 IAVYLK 400
IA Y +
Sbjct: 357 IAGYTQ 362
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 114/274 (41%), Gaps = 4/274 (1%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +LV + GL P+ T +++ G + +A+ V++E++ + L+
Sbjct: 204 AERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVG 263
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
Y + GC +E +S+ +++ + ++P+V ++ I K G LE +++M RG
Sbjct: 264 GYCKAGCSHEALSVFAEMTQKG--IMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGL 321
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
++ T A I + + G L + A +++ R A+ Y + E
Sbjct: 322 QMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARE 381
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L ++ + ++ ++ +Y N S +M E G PD T++
Sbjct: 382 LLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLC 441
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D H+ ++M + PD TY ++D +
Sbjct: 442 EEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGH 475
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 133/318 (41%), Gaps = 20/318 (6%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L K+ + + + G + ++++ L + K A L ++++G+ P+ T +L+ C
Sbjct: 37 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 96
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
N G +A + +++ V S L+DA+ + G E + D++ R+ D
Sbjct: 97 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 156
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
YS I+ F +L+ + + MVS+ D T N I + ++ + E + R
Sbjct: 157 VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF-R 215
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFF-----MLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
R L+ V++ L + F M E +++ + +N LL
Sbjct: 216 EMSQRGLVG----NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 271
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF---WDL--HLSLEHMKHES 319
N K++ F + + P + T+NI + WDL +LSL+ +K
Sbjct: 272 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK--- 328
Query: 320 VGPDLVTYGCVVDAYLDK 337
PD+V Y ++ + K
Sbjct: 329 --PDVVAYNTMISGFCRK 344
>gi|15231160|ref|NP_187922.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75311241|sp|Q9LK58.1|PP225_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13150
gi|10172602|dbj|BAB01406.1| unnamed protein product [Arabidopsis thaliana]
gi|66792658|gb|AAY56431.1| At3g13150 [Arabidopsis thaliana]
gi|332641781|gb|AEE75302.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 551
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 105/251 (41%), Gaps = 45/251 (17%)
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154
VL+ Q ++++ S FV+ + +L YG G + D++ N + + ++
Sbjct: 109 VLQYQKKFDDIKSEDFVIRIMLL------YGYSGMAEHAHKLFDEMPELNCERTVKSFNA 162
Query: 155 AISCFGKQGQLELMENTLKEMVSR-GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
+S + +L+ T KE+ + G + D T N I R GS+ ++ + + L+++
Sbjct: 163 LLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKN 222
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
D +SF L E +F+ F+ G+ +W+L
Sbjct: 223 GFEPD-----LISFNTLLE-EFYRRELFVE---------GDRIWDL-------------- 253
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
M P++ ++N R +R F D ++ MK E + PD+ TY ++ A
Sbjct: 254 ------MKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITA 307
Query: 334 YLDKRLGRNLD 344
Y R+ NL+
Sbjct: 308 Y---RVDNNLE 315
>gi|357450749|ref|XP_003595651.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484699|gb|AES65902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/336 (18%), Positives = 131/336 (38%), Gaps = 60/336 (17%)
Query: 57 KKKPHLAHQLVNTVKSEGLLPD-------------------NSTLCALMLCYANNGFVLE 97
+ + +L H L+ + K GLL D +C ++ Y+ G +
Sbjct: 396 RNEDNLYHLLICSCKEAGLLEDAVGIYNQMMKSNADEKKLNKHIVCTMIDIYSVMGCFKD 455
Query: 98 AQVVWEELLSSSFVLSVQVL--SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV---- 151
A++++ +L SS S+ ++ S ++ Y R G + S++D + R D++P+V
Sbjct: 456 AEMLYLKLKKSSSPNSLDMIAYSIVVRMYVRAGSLEDACSVLDDIDKR-PDIVPDVFLLR 514
Query: 152 ---------------------------------YSRAISCFGKQGQLELMENTLKEMVSR 178
Y+ I+C + ++ + EM+ R
Sbjct: 515 DMLRIYQRRNMVDKLAQVYYKILKDRLNWDQEFYNCVINCCARALPIDELSRLFDEMLQR 574
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF ++ T N + + + ++ Y K+ + L+D + +Y K++ F +
Sbjct: 575 GFMPNTFTYNVMLNVFGKAKLFKKVRRLYFMAKK-QGLVDVITYNTIIDSYGKKKDFRNM 633
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+R + + +N +L +Y + +M + + M E+ DL T+NI
Sbjct: 634 SRTVRKMQFDGFSVSLEAYNSMLDAYGKDSQMDAFRSVLKMMKESNCASDLYTYNIVINI 693
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ ++ L + + PDL +Y ++ AY
Sbjct: 694 YGEQGWIEEVSDVLAELNECGLRPDLCSYNTLIKAY 729
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 139/329 (42%), Gaps = 53/329 (16%)
Query: 85 LMLCYANNGFVLEAQV-VWEELLSSSF---VLSVQVLSDLMDAYGRIGCFNEI----ISI 136
L++C +LE V ++ +++ S+ L+ ++ ++D Y +GCF + + +
Sbjct: 404 LLICSCKEAGLLEDAVGIYNQMMKSNADEKKLNKHIVCTMIDIYSVMGCFKDAEMLYLKL 463
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
S + D++ YS + + + G LE + L ++ R + F+
Sbjct: 464 KKSSSPNSLDMI--AYSIVVRMYVRAGSLEDACSVLDDIDKRP----DIVPDVFL----- 512
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
L +M Y R R+++DK + V + LK+R +
Sbjct: 513 ---LRDMLRIYQR----RNMVDK--LAQVYYKILKDRL----------------NWDQEF 547
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+N ++ A + L R F M + GF P+ T+N+ F + +F + L M
Sbjct: 548 YNCVINCCARALPIDELSRLFDEMLQRGFMPNTFTYNVMLNVFGKAKLFKKVR-RLYFMA 606
Query: 317 HESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY--VFEAFGKGDFH 374
+ D++TY ++D+Y K+ RN+ + KM D VS + Y + +A+GK
Sbjct: 607 KKQGLVDVITYNTIIDSYGKKKDFRNMSRTVRKMQFDGFS-VSLEAYNSMLDAYGKDSQM 665
Query: 375 SSSEAFLEFKRQRK-----WTYRKLIAVY 398
+ + L+ ++ +TY +I +Y
Sbjct: 666 DAFRSVLKMMKESNCASDLYTYNIVINIY 694
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 110 FVLSVQVLSDLMDAYGR---IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
F +S++ + ++DAYG+ + F ++ ++ + +C +DL Y+ I+ +G+QG +E
Sbjct: 645 FSVSLEAYNSMLDAYGKDSQMDAFRSVLKMMKESNCA-SDLY--TYNIVINIYGEQGWIE 701
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ + L E+ G D + N I Y G + E A +K R K GI
Sbjct: 702 EVSDVLAELNECGLRPDLCSYNTLIKAYGIAGMV---EEAVELIKEMR----KNGIEPDQ 754
Query: 227 FTY 229
TY
Sbjct: 755 TTY 757
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 30/271 (11%)
Query: 130 FNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
+N + ++DQ + P V Y+ I K ++ + ++M+ RG D+ T
Sbjct: 181 YNLFLEMMDQ------GIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTY 234
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR-AVSFTYL------KERKFFMLGE 240
N I Y G E+ + S H ++ + I A+ YL +E + F
Sbjct: 235 NCLIHGYLSTGKWKEVVQMLEEM--STHGLEPDCITYALLLDYLCKNGRCREARLFFDSM 292
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
F + + + D+ ++ +LL YA + + M G P+ FNI A++
Sbjct: 293 FRKGI---KPDVA--IYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYA 347
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVST 360
+ +M + M+ + + PD+V++G ++DA +LGR +D + + N + V+
Sbjct: 348 KKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALC--KLGR-VDDAVLQFNQMINEGVTP 404
Query: 361 DPYVFEAF-----GKGDFHSSSEAFLEFKRQ 386
+ +VF + G + + E F E Q
Sbjct: 405 NIFVFSSLVYGLCTVGKWEKAEELFFEVLDQ 435
>gi|302757495|ref|XP_002962171.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
gi|300170830|gb|EFJ37431.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
Length = 731
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 32/260 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ L + + + +++ VK+ G P ++ +++ Y + G V EA+ V++E+L+S
Sbjct: 478 SLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLAS 537
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
V S L++AY G E +D S + A +P+ VY+ + + G
Sbjct: 538 GVEADVICYSALLNAYAEAGFAREAQQTLD--SLKAAGFVPDTIVYTSMMKLYSNLGLTA 595
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
E +E +SR S D N + Y + G TE E + ++R K G+ V+
Sbjct: 596 EAEKIYEE-ISR-LSPDVFAANTMLNLYIKSGMFTEAEQLFRAMQRG-----KPGLNEVA 648
Query: 227 FTYLKERKFFMLGEFLRDVGLGRK--DLGNLLWNLLLLSYAGNFK-----------MKSL 273
T M+ + R+ G + D+ ++ L++ A F M+
Sbjct: 649 CT--------MMLKLYREAGKIEQGLDVARVMSRRFLITDARAFNGVIAMYVKAGLMREA 700
Query: 274 QREFMRMSEAGFHPDLTTFN 293
M AG P +TF+
Sbjct: 701 LEALKEMRRAGLVPSRSTFS 720
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 118/300 (39%), Gaps = 49/300 (16%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF----------VLEAQ 99
L+ LGR K L + + + E + P T L+ + G ++E+
Sbjct: 123 LLRTLGRAAKWELLQKYWSEMLGERVPPTIFTYSILVDVHGRAGMKDEAIRFYRHMIESG 182
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRI-GCFNEIISIIDQVSCRNADLLPEVYSRAISC 158
V +E++ S+++ + DL +A G F+E +++D + R + PE ++ IS
Sbjct: 183 VEPDEVMVSTYMNLQRRFGDLEEAEKAFWGLFSE--NLVDGTTKRPEN--PETFNTMISF 238
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
+G+ + EM+ G + + T NA I Y + G E E
Sbjct: 239 YGEHAKFAEASKVFAEMMKAGVELTTVTFNAMIHVYGKAGRTREAE-------------- 284
Query: 219 KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
+ T +K+RK + DV +N L+ Y N K++ +
Sbjct: 285 ------LLVTKMKQRK-----DCCPDVA---------TYNSLIEMYVKNDKLELVSGCLE 324
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
RM ++G PD TF A++ ++ W ++ M+ D Y ++ Y+ R
Sbjct: 325 RMRDSGVSPDQVTFRTLISAYAANNVVWKAEALVQEMEGSGFFIDQAMYTVMIAMYVRAR 384
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 30 DLARKIIRYRKQEGF----VDCASLVE---DLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
++ ++++ K GF C+S+V D+GR ++ A ++ + + G+ D
Sbjct: 490 EILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVRE---AERVFKEMLASGVEADVICY 546
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
AL+ YA GF EAQ + L ++ FV V + +M Y +G E I +++S
Sbjct: 547 SALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLGLTAEAEKIYEEIS- 605
Query: 143 RNADLLPEVYS 153
L P+V++
Sbjct: 606 ---RLSPDVFA 613
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 67/334 (20%), Positives = 123/334 (36%), Gaps = 63/334 (18%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+E + K L + ++ G+ PD T L+ YA N V +A+ + +E+ S
Sbjct: 305 SLIEMYVKNDKLELVSGCLERMRDSGVSPDQVTFRTLISAYAANNVVWKAEALVQEMEGS 364
Query: 109 SFV----------------------------------LSVQVLSDLMDAYGRIGCFNEII 134
F L V +MD Y C ++
Sbjct: 365 GFFIDQAMYTVMIAMYVRARDVSKAESVFRFLHSRGGLEVSTYVGVMDVYAEHKCLDQAR 424
Query: 135 SIIDQVSCRNADL-LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ + +NA L P +Y+ + +G + + M G S + A+ N+ I
Sbjct: 425 EVFEL--AKNAGLKTPSLYNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSLIQL 482
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIR--------AVSFTYLKERKFFMLGEFLRDV 245
+ G L E+ L+R L+ G + VSF Y + +++
Sbjct: 483 LCK-GRLLEI------LQRVLVLVKAAGFKPSLASCSSVVSF-YGDMGRVREAERVFKEM 534
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ + ++ LL +YA + Q+ + AGF PD + S M ++
Sbjct: 535 LASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYT------SMMKLY 588
Query: 306 WDLHLSLEHMK-HESV---GPDLVTYGCVVDAYL 335
+L L+ E K +E + PD+ +++ Y+
Sbjct: 589 SNLGLTAEAEKIYEEISRLSPDVFAANTMLNLYI 622
>gi|225432159|ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic [Vitis vinifera]
Length = 498
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/338 (20%), Positives = 132/338 (39%), Gaps = 77/338 (22%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA--------------- 98
LG+ +P AH+L +T+ EG P AL+ Y + + EA
Sbjct: 154 LGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQP 213
Query: 99 ---------------------QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
+ ++EE+ S + + ++ YG+ G F+E+ ++
Sbjct: 214 DVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEMEKVL 273
Query: 138 DQVSCRNADLLPEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY- 194
+ + P+V++ +S FG +GQ+E+ME ++ + G ++ T N I Y
Sbjct: 274 SGM-LESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGAYG 332
Query: 195 ------------------------SRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSF 227
S + ++ E + G K + D+ EG++A +
Sbjct: 333 KKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKADTK 392
Query: 228 TYLK-ERKFFMLGEFLRDVG----LGRKDL--GNLLWNLLLLSYAGNFKMKSLQREFMRM 280
T+ R + G F + V G+ ++ +N ++ + A + ++R F RM
Sbjct: 393 TFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLIEMERVFNRM 452
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSM---FWDLHLSLEHM 315
+ PD TT++I A+ + M +DL + M
Sbjct: 453 KDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRM 490
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 147/342 (42%), Gaps = 20/342 (5%)
Query: 9 HGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDC-ASLVEDLGRKKKPHLAHQLV 67
G F S +T KN + +K+ R + + + A + DL KK+ A ++
Sbjct: 74 QGEFPGTSAEGRSRKTPIKN--IKKKLDRKNDAKAWANTVAEALSDLVLKKQWLQALEVF 131
Query: 68 NTVKSEGLL-PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126
++ + P T L++ +G L A +++ ++ + ++ + L+ +Y R
Sbjct: 132 EMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCR 191
Query: 127 IGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
+E SI++Q+ P+V YS + + EL+E+ +EM R + ++
Sbjct: 192 SNLIDEAFSILNQMKTL-PRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNT 250
Query: 185 ATGNAFIIYYSRFGSLTEMETAY-GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG---E 240
T N + Y + G EME G L+ + D + + + + + ++ E
Sbjct: 251 VTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYE 310
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNF---KMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
R+ G+ + +N+L+ +Y KM S+ E+MR + F +T+N
Sbjct: 311 KFRNFGI---EPETRTFNILIGAYGKKRMYDKMSSVM-EYMRKLQ--FPWTTSTYNNVIE 364
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
AFS + ++ + + M+ E + D T+ C++ Y + L
Sbjct: 365 AFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGL 406
>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 129/307 (42%), Gaps = 21/307 (6%)
Query: 32 ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN 91
A + ++ V ++V + + + A LV ++++G +P++ T ++ A
Sbjct: 264 ASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACAR 323
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI-----ISIIDQVSCRNAD 146
GF+ + + + + + + V + L D Y + GC N IS+ D+VS +
Sbjct: 324 IGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKISLRDEVS---YN 380
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
+L YS+ +C L L EM +G +D + I + +L + +
Sbjct: 381 ILIIGYSQTTNC---SESLRL----FLEMGIKGMKLDVVSYMGVISACANLAALKQGKEV 433
Query: 207 YGRLKRSRHLIDKEGI-RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+G R +HL I A+ Y+K + + G+ R + +D + WN ++L Y
Sbjct: 434 HGLAVR-KHLHTHLFIANALLDFYIKCGRIDLAGKVFRQI--PSRDTAS--WNSMILGYG 488
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
++ F M E G D ++ A S + + EHM+ +++ P +
Sbjct: 489 MLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQM 548
Query: 326 TYGCVVD 332
Y C+VD
Sbjct: 549 HYACMVD 555
>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g09680
gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 607
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 117/303 (38%), Gaps = 39/303 (12%)
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
LM + G + +AQ V++E+ S +V + L++ Y ++G +E + Q+
Sbjct: 246 LMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQM--EK 303
Query: 145 ADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ P+V YS I+ K+ +++ EM RG + I +SR G +
Sbjct: 304 SRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDL 363
Query: 203 METAY-------------------------GRLKRSRHLID---KEGIRAVSFTYLKERK 234
M+ +Y G L +R+++D + G+R TY
Sbjct: 364 MKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLID 423
Query: 235 FFMLG-------EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
F G E +++ +L + ++ L+ ++ +R M AG P
Sbjct: 424 GFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKP 483
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGL 347
D T+ + AF + L+ M+ + P +VTY +++ +N D L
Sbjct: 484 DDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLL 543
Query: 348 SKM 350
M
Sbjct: 544 DAM 546
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 123/306 (40%), Gaps = 39/306 (12%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L ++ + R + ++L+ L ++ K AH L + + GL+P++ L+ ++
Sbjct: 297 LKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHS 356
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
NG + + ++++LS + + + L++ + + G +I+D + R L P+
Sbjct: 357 RNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG--LRPD 414
Query: 151 --VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
Y+ I F + G +E KEM G +D +A + + G + + E A
Sbjct: 415 KITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALR 474
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+ R+ GI+ TY M+ F + G G F
Sbjct: 475 EMLRA-------GIKPDDVTYT-----MMMDAFCKK---GDAQTG--------------F 505
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
K+ M G P + T+N+ ++ + + L+ M + V PD +TY
Sbjct: 506 KL------LKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYN 559
Query: 329 CVVDAY 334
+++ +
Sbjct: 560 TLLEGH 565
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 5/297 (1%)
Query: 41 QEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC-ALMLCYANNGFVLEAQ 99
E F + SL+E + +K + A + ++ + P L ALM+ Y + GF+ +A
Sbjct: 131 HEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVTPMCGFLVDALMITYTDLGFIPDAI 190
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159
+ F + ++ +L+D ++ I ++ L V++ ++ F
Sbjct: 191 QCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKF 250
Query: 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
K+G + + E+ R + N I Y + G+L E ++++SR D
Sbjct: 251 CKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDV 310
Query: 220 EGIRAVSFTYLKERKFFMLGEF-LRDVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREF 277
A+ KE K M G L D R + N +++ L+ ++ N ++ ++ +
Sbjct: 311 FTYSALINALCKENK--MDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESY 368
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+M G PD+ +N F + ++ M + PD +TY ++D +
Sbjct: 369 QKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGF 425
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 101/259 (38%), Gaps = 2/259 (0%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P++ L L+ G +A +W LL F ++ + L+ + G E + +
Sbjct: 521 PNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRL 580
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ ++ R L Y+ IS K+G++E EMV +G D+ T N I R
Sbjct: 581 LKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCR 640
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT-YLKERKFFMLGEFLRDVGLGRKDLGNL 255
G L E + K SR L+ V Y K K + ++ +L ++
Sbjct: 641 IGKLDEAVNLWNECK-SRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSV 699
Query: 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315
++N L+ +Y N + M G P T++ + D ++ M
Sbjct: 700 VYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM 759
Query: 316 KHESVGPDLVTYGCVVDAY 334
+ E + P++V Y ++ Y
Sbjct: 760 RKEGLLPNVVCYTALIGGY 778
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L + ++S+G+ P +T +L+ N G + +A+ + +E+ + +V + L+
Sbjct: 717 AFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIG 776
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
Y ++G +++++++ ++S + D+ P Y+ I + K G ++ L EMV +G
Sbjct: 777 GYCKLGQMDKVVNVLQEMS--SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGI 834
Query: 181 SVDSATGNAFIIYYSRFGSLTE 202
D+ T N + + G + E
Sbjct: 835 VPDTVTYNVLTNGFCKEGKIEE 856
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 123/318 (38%), Gaps = 22/318 (6%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
EA V +E L F + V + L+D Y ++G + + I + + + + I
Sbjct: 401 EANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSII 460
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
F K GQ+E E L+EM+SRGFS++ II++ S E + R R++
Sbjct: 461 QGFCKIGQMEQAECILEEMLSRGFSINPGAFTT-IIHWLCMNSRFESALRFLREMLLRNM 519
Query: 217 IDKEGIRAVSFTYL-KERKFFMLGEF---LRDVGLGRKDLGNLL-WNLLLLSYAGNFKMK 271
+G+ L KE K E L + G G NL+ N L+ M+
Sbjct: 520 RPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFG----ANLVTTNALIHGLCKTGNMQ 575
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
R +M E GF D T+N + + M + + PD TY ++
Sbjct: 576 EAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 635
Query: 332 DAYLDKRLGRNLDFGLSKMN----LDDSPVVSTDPYVFEAFGKGD-FHSSSEAFLEFKRQ 386
R+G+ LD ++ N D P V T + + + K D + F E Q
Sbjct: 636 HGMC--RIGK-LDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ 692
Query: 387 ----RKWTYRKLIAVYLK 400
Y LI Y +
Sbjct: 693 NLELNSVVYNTLIRAYCR 710
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 118/291 (40%), Gaps = 26/291 (8%)
Query: 27 KNGDL--ARKIIRYRKQEGFV----DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K G++ A ++++ + GFV +L+ ++ K +L + +G+ PD
Sbjct: 570 KTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTF 629
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T L+ G + EA +W E S V +V ++D Y + E + ++
Sbjct: 630 TYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTEL 689
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+N +L VY+ I + + G +M S+G +AT + SL
Sbjct: 690 LTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTAT----------YSSL 739
Query: 201 TEMETAYGRLKRSRHLID---KEGI--RAVSFT-----YLKERKFFMLGEFLRDVGLGRK 250
GR++ ++ LID KEG+ V +T Y K + + L+++
Sbjct: 740 IHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDI 799
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ + +++ Y+ + MK+ + M G PD T+N+ F +
Sbjct: 800 HPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCK 850
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 61/336 (18%), Positives = 130/336 (38%), Gaps = 51/336 (15%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDL--GRKKKP 60
T+S+ ++G K ++FN A +++ ++GF + L G K
Sbjct: 385 TYSVLINGLMKLEKFNE------------ANSVLKETLEKGFTPNEVVYNTLIDGYCKMG 432
Query: 61 HL--AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
+L A ++ + S+G+ P++ TL +++ + G + +A+ + EE+LS F ++ +
Sbjct: 433 NLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFT 492
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
++ F + + ++ RN + + + K+G+ ++ +
Sbjct: 493 TIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK 552
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF + T NA I + G++ E ++ ++DK + KE
Sbjct: 553 GFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKE------ 606
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
G+ + G FK++ M + G PD T+N+
Sbjct: 607 ---------GKVEEG--------------FKLRG------EMVKQGIEPDTFTYNLLIHG 637
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R+ + K + P++ TYG ++D Y
Sbjct: 638 MCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGY 673
>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial [Vitis vinifera]
gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 116/294 (39%), Gaps = 5/294 (1%)
Query: 39 RKQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
RK+ G V C LV+ L +K A +++ + + G +P+ T ++ Y + G
Sbjct: 232 RKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGD 291
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154
++ A+ V+ E+L +V + LMD Y + G F + + ++D++ + Y
Sbjct: 292 MVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGV 351
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
I + K+ + + N L +M+ + + SA I G + + +L +
Sbjct: 352 IIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKN 411
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
D + KE K + + + G L +N L+ ++
Sbjct: 412 CTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIP-STLTYNALIAGMCEGGELPEAA 470
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
R + M E G P+ T+N+ F ++ + +E M P+ TY
Sbjct: 471 RLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYA 524
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ + +L Y M +R F + + G+ PD TT+ I + + F D ++
Sbjct: 277 VTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDE 336
Query: 315 MKHESVGPDLVTYGCVVDAYL-DKRLGRNLDF 345
M+ V P+ VTYG +++AY +K+ G L+
Sbjct: 337 MEENRVEPNDVTYGVIIEAYCKEKKSGEVLNL 368
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 126/321 (39%), Gaps = 39/321 (12%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
RK+ G V S + L + + A ++ + ++G +PD + L+ YA
Sbjct: 358 RKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATE 417
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV- 151
G + ++ + V + + L+ A+ + G +E + + ++ + + P+V
Sbjct: 418 GRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEM--QGQGVRPDVV 475
Query: 152 -YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
YS IS F + G+L +M+S G ++ ++Y+S L +G L
Sbjct: 476 TYSTLISAFCRMGRLADAMEKFSQMISIGLEPNT------VVYHS----LIHGFCMHGDL 525
Query: 211 KRSRHLIDK---EGIRAVSFTYLKERKFFMLGEFLRDVGLGR----KDLGNLL------- 256
+++ L+ + +GI + + + E GR D+ NL+
Sbjct: 526 VKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNE-------GRVMDAHDVFNLVIHIGDRP 578
Query: 257 ----WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+N L+ Y KM+ M G PD+ T+N + + D +
Sbjct: 579 TIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILF 638
Query: 313 EHMKHESVGPDLVTYGCVVDA 333
M H+ V P VTY V+D
Sbjct: 639 REMLHKKVKPTTVTYSIVLDG 659
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/317 (18%), Positives = 118/317 (37%), Gaps = 7/317 (2%)
Query: 25 HPKNGDLARKIIRYRKQE-GFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEG--LLP 77
H K D A ++ +R + G V A ++++ L + A +V + EG P
Sbjct: 203 HAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSP 262
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
D + ++ + G V +A + E++ V + ++DA + ++ ++
Sbjct: 263 DVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVL 322
Query: 138 DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
Q+ + + Y+ I + G + ++M S+G T N+F+ +
Sbjct: 323 RQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKH 382
Query: 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW 257
G + E + + H+ D + Y E +F + + +
Sbjct: 383 GRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCF 442
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
N+L+ ++A M F M G PD+ T++ AF RM D M
Sbjct: 443 NILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMIS 502
Query: 318 ESVGPDLVTYGCVVDAY 334
+ P+ V Y ++ +
Sbjct: 503 IGLEPNTVVYHSLIHGF 519
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 14/203 (6%)
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+V Y+ + K ++ E L++MV +G D T A I YS G E
Sbjct: 297 PDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKM 356
Query: 207 YGRLKRSRHLIDKEGIRAVSF----TYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLL 261
+ ++ S+ LI GI V+F + L + E + + + +L+ +++LL
Sbjct: 357 FRKMT-SKGLI--PGI--VTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILL 411
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
YA + + F M++ G + FNI A ++ M + L M+ + V
Sbjct: 412 HGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVR 471
Query: 322 PDLVTYGCVVDAYLDKRLGRNLD 344
PD+VTY ++ A+ R+GR D
Sbjct: 472 PDVVTYSTLISAFC--RMGRLAD 492
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 152/368 (41%), Gaps = 24/368 (6%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L K+ + + + G + ++++ L + K A L ++++G+ P+ T +L+ C
Sbjct: 856 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 915
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
N G +A + +++ V S L+DA+ + G E + D++ R+ D
Sbjct: 916 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 975
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
YS I+ F +L+ + + MVS+ D T N I + ++ + E +
Sbjct: 976 VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 1035
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFF-----MLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ + R L+ V++ L + F M E +++ + +N LL
Sbjct: 1036 MSQ-RGLVGN----TVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 1090
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF---WDL--HLSLEHMKHES 319
N K++ F + + P + T+NI + WDL +LSL+ +K
Sbjct: 1091 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK--- 1147
Query: 320 VGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY---VFEAFGKGDFHSS 376
PD+V Y ++ + K D +M +D + ++ Y + GD +S
Sbjct: 1148 --PDVVAYNTMISGFCRKGSKEEADALFKEMK-EDGTLPNSGCYNTLIRARLRDGDREAS 1204
Query: 377 SEAFLEFK 384
+E E +
Sbjct: 1205 AELIKEMR 1212
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 123/306 (40%), Gaps = 30/306 (9%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
D ++I R + V +LV L + A +L++ + + + P+ T AL+ +
Sbjct: 314 DFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 373
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA---YGRIGCFNEIISIIDQVSCRNAD 146
NG VLEA+ ++EE++ S + S L++ + RI N++ ++ C AD
Sbjct: 374 VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCL-AD 432
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
++ Y+ I+ F K ++E +EM RG ++ T N I + + G + + +
Sbjct: 433 VVS--YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEF 490
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF------------LRDVGLGRKDLGN 254
+ ++ D GI +TY +LG D+ DL
Sbjct: 491 FSQM-------DFFGISPDIWTY-----NILLGGLCDNGELEKALVIFEDMQKREMDLDI 538
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ + ++ K++ F +S G PD+ T+ + ++
Sbjct: 539 VTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTK 598
Query: 315 MKHESV 320
MK E +
Sbjct: 599 MKQEGL 604
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 13/201 (6%)
Query: 24 THPKNG--DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNST 81
H K G D+ARK+ + V ++ + K+PH L ++ G+ PD T
Sbjct: 184 AHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRLAGVWPDEVT 243
Query: 82 LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141
+ +++ A G ++V + + + F V + + L+D YG+ GC E + D+
Sbjct: 244 VLSVISACAELGDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLEEAWQVFDRT- 302
Query: 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
+ L+ ++ + G E + M+ G D T A ++ Y+ G +
Sbjct: 303 -KRKSLI--TWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYAHKGFVD 359
Query: 202 E-------METAYGRLKRSRH 215
E M+ YG R H
Sbjct: 360 EGIRLFESMQRDYGVEPRIEH 380
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/375 (21%), Positives = 142/375 (37%), Gaps = 34/375 (9%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
S++ L R K A + + + +G+LPD L+ + G + A + E+ S
Sbjct: 320 GSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS 379
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
V + ++ + +IG E + ++ C+ + ++ I+ + K G ++
Sbjct: 380 RDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKD 439
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
M+ G S + T I + G L ++A L H + K G++ F
Sbjct: 440 AFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL---DSANELL----HEMWKIGLQPNIF 492
Query: 228 TYLK-----------ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276
TY E ++GEF GL + + + L+ +Y + +M Q
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEF-EAAGL---NADTVTYTTLMDAYCKSGEMDKAQEI 548
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
M G P + TFN+ F M D L M + + P+ T+ +V Y
Sbjct: 549 LKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC- 607
Query: 337 KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSS--EAFLEFKRQRK------ 388
+ NL + S V D +E KG + + EA+ F+ +
Sbjct: 608 --IRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 665
Query: 389 -WTYRKLIAVYLKKQ 402
TY LI +LK++
Sbjct: 666 VSTYSVLIKGFLKRK 680
>gi|195613918|gb|ACG28789.1| leaf protein [Zea mays]
Length = 637
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 123/316 (38%), Gaps = 34/316 (10%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +V +++ G PD T + YANN A+ + E+ + S + ++
Sbjct: 227 AWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEELIVEI-QTRVRTSERTWGIIIG 285
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
Y R G E + + Q+ ++A +P V ++ + F + + L M G
Sbjct: 286 GYCREGRLEEALRCVQQM--KDAGSVPNVVIFNTLLKGFLDANDMAAVNKILGLMKKFGI 343
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTYLKERKFFM 237
D + Y + + + + G + + H+ DK GI Y K F+
Sbjct: 344 KPD------IVTYSHQLNTFSSL----GHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFV 393
Query: 238 LG---EFLRDVGLGRKDLG---NLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
E D+ L LG N++ + ++ + M+S R + +M ++G +P+L
Sbjct: 394 RAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYPNLR 453
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
TF +S W L+ M+ V P TY + DA+ L N++
Sbjct: 454 TFETLIWGYSEQKQPWKAEEVLQMMRETGVKPKQSTYCLIADAWKAVGLTENIN------ 507
Query: 351 NLDDSPVVSTDPYVFE 366
N + SP PY E
Sbjct: 508 NSNGSP---NGPYAIE 520
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 214 RHLIDKEGIRA--VSFTYL-----KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
+HL+D EG + V++T L +R F + L +V L ++ +N L+ ++
Sbjct: 91 KHLMD-EGHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVE 149
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE-SVGPDLV 325
+M F +M +G HP +TFN + + + + M E SV P+L
Sbjct: 150 AKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLT 209
Query: 326 TYGCVVDAYLDKR 338
TY +V A+ D R
Sbjct: 210 TYNILVKAWCDHR 222
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 61/341 (17%), Positives = 120/341 (35%), Gaps = 21/341 (6%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
I R R+ +D KKP+ AH + + EG P T L+ N
Sbjct: 68 INRTRQMRALID----------SKKPYQAHSVFKHLMDEGHKPSLVTYTILLTALTNQRM 117
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154
+ E+ + + L++A+ E I+ ++ ++
Sbjct: 118 FESIPSLLAEVELAGVRPDSIFFNALINAFVEAKRMGEAINTFWKMKHSGCHPTTSTFNT 177
Query: 155 AISCFGKQGQLELMENTLKEMVSRG-FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
I +G G+ E + M G + T N + + +L E G+++
Sbjct: 178 LIKGYGIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAG 237
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
D ++ Y + + E + ++ R W +++ Y +++
Sbjct: 238 GFEPDIVTYNTIASAYANNDETWRAEELIVEIQT-RVRTSERTWGIIIGGYCREGRLEEA 296
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
R +M +AG P++ FN F + ++ L MK + PD+VTY ++
Sbjct: 297 LRCVQQMKDAGSVPNVVIFNTLLKGFLDANDMAAVNKILGLMKKFGIKPDIVTYSHQLNT 356
Query: 334 YLDKRLGRNLDFGLSKMNLDDSPV---VSTDPYVFEAFGKG 371
+ +L M++ D + + DP V+ KG
Sbjct: 357 F------SSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKG 391
>gi|357506869|ref|XP_003623723.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498738|gb|AES79941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 426
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y++ I + K+ QLE EN M RGF D + YS+ G L E + +K
Sbjct: 184 YTKLIHYYSKENQLEAAENIFTLMKQRGFICDQVILTTMVHMYSKAGHLDRAEEYFEEIK 243
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+DK ++ Y++ L ++ G+ ++ LL +Y+ +
Sbjct: 244 LLGEPLDKRSYGSMIMAYIRAGMPEKGESLLEEMDAQDIYAGSEVYKALLRAYSVIGNAE 303
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
QR F + AG PD ++ A+S ++ E+MK + P V+
Sbjct: 304 GAQRVFDAIQLAGIIPDDKMCSLLIYAYSMAGQSQKARIAFENMKRAGIEPTDKCISSVL 363
Query: 332 DAY 334
AY
Sbjct: 364 VAY 366
>gi|414885834|tpg|DAA61848.1| TPA: leaf protein [Zea mays]
Length = 637
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 123/316 (38%), Gaps = 34/316 (10%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +V +++ G PD T + YANN A+ + E+ + S + ++
Sbjct: 227 AWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEELIVEI-QTRVRTSERTWGIIIG 285
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
Y R G E + + Q+ ++A +P V ++ + F + + L M G
Sbjct: 286 GYCREGRLEEALRCVQQM--KDAGSVPNVVIFNTLLKGFLDANDMAAVNKILGLMEKFGI 343
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTYLKERKFFM 237
D + Y + + + + G + + H+ DK GI Y K F+
Sbjct: 344 KPD------IVTYSHQLNTFSSL----GHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFV 393
Query: 238 LG---EFLRDVGLGRKDLG---NLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
E D+ L LG N++ + ++ + M+S R + +M ++G +P+L
Sbjct: 394 RAQQPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYPNLR 453
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
TF +S W L+ M+ V P TY + DA+ L N++
Sbjct: 454 TFETLIWGYSEQKQPWKAEEVLQMMRETGVKPKQSTYCLIADAWKAVGLTENIN------ 507
Query: 351 NLDDSPVVSTDPYVFE 366
N + SP PY E
Sbjct: 508 NSNGSP---NGPYAIE 520
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 214 RHLIDKEGIRA--VSFTYL-----KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
+HL+D EG + V++T L +R F + L +V L ++ +N L+ ++
Sbjct: 91 KHLMD-EGHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVE 149
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE-SVGPDLV 325
+M F +M +G HP +TFN + + + + M E SV P+L
Sbjct: 150 AKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLT 209
Query: 326 TYGCVVDAYLDKR 338
TY +V A+ D R
Sbjct: 210 TYNILVKAWCDHR 222
>gi|15217583|ref|NP_171699.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75264110|sp|Q9LPC4.1|PPR1_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g01970
gi|8570448|gb|AAF76475.1|AC020622_9 Contains similarity to an unknown protein gi|AAD26479 from
Arabidopsis thaliana BAC gb|AC007169 and contains
multiple PPR PF|01535 repeats [Arabidopsis thaliana]
gi|34098825|gb|AAQ56795.1| At1g01970 [Arabidopsis thaliana]
gi|110735700|dbj|BAE99830.1| hypothetical protein [Arabidopsis thaliana]
gi|332189240|gb|AEE27361.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 409
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 1/195 (0%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y++ I +GK Q+E E TL M +RGF +D T A + YS+ G E + +K
Sbjct: 168 YTKIIHYYGKLNQVEDAERTLLSMKNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEIK 227
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+D ++ Y++ LR++ G ++ LL Y+ +
Sbjct: 228 LLGEPLDYRSYGSMIMAYIRAGVPEKGESLLREMDSQEICAGREVYKALLRDYSMGGDAE 287
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+R F + AG PD+ + A+S + L+ E+M+ + V+
Sbjct: 288 GAKRVFDAVQIAGITPDVKLCGLLINAYSVSGQSQNARLAFENMRKAGIKATDKCVALVL 347
Query: 332 DAY-LDKRLGRNLDF 345
AY +++L L F
Sbjct: 348 AAYEKEEKLNEALGF 362
>gi|115465970|ref|NP_001056584.1| Os06g0111300 [Oryza sativa Japonica Group]
gi|113594624|dbj|BAF18498.1| Os06g0111300 [Oryza sativa Japonica Group]
Length = 978
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/242 (19%), Positives = 99/242 (40%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V+ L R K A++L + +G D T+ L+ G + A +++ ++SS
Sbjct: 651 AMVDALCRCGKTEEAYRLFMELIDQGHNGDAVTISILVTHLTKQGKLYSAVSIYDRMISS 710
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
S+Q + ++ YG+ G + + + + + Y+ +S +GK G+
Sbjct: 711 GIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSFYGKAGKHHEA 770
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
M G + N I Y+ G E E + ++++ H+ D A+
Sbjct: 771 SLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTYLALIRA 830
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y + + + E ++ + +N L+ ++ ++ QR + +M EAG D
Sbjct: 831 YTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMYNQMEEAGIPAD 890
Query: 289 LT 290
L
Sbjct: 891 LA 892
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 113/303 (37%), Gaps = 44/303 (14%)
Query: 40 KQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQ 99
K G + L+ R+ A L + G PD++ + L++ Y + +AQ
Sbjct: 573 KPGGLSSVSQLIMKFAREGSTDEAKFLYEHLTELGAKPDDTAIATLIVQYGQAQQLEQAQ 632
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE----IISIIDQVSCRNADLLPEVYSRA 155
++E S+SF + V + ++DA R G E + +IDQ N D + S
Sbjct: 633 KLFE-TASTSFPVGGSVYNAMVDALCRCGKTEEAYRLFMELIDQ--GHNGDAV--TISIL 687
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
++ KQG+L + M+S G T N I Y + G L + + +
Sbjct: 688 VTHLTKQGKLYSAVSIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGL 747
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
ID++ TY F+ AG SL
Sbjct: 748 PIDEK-------TYTNMLSFY--------------------------GKAGKHHEASLL- 773
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
F RM E G P +FN A++ + + + + M+ + PD TY ++ AY
Sbjct: 774 -FSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTYLALIRAYT 832
Query: 336 DKR 338
+ +
Sbjct: 833 EGK 835
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 118/290 (40%), Gaps = 14/290 (4%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC-YANNGFVLEAQVVWEELLSSSFVLS 113
G+ K LA + G PD + C +LC YA G + + + + + V S
Sbjct: 181 GQVGKVKLAEVTFLEMLQAGCEPD-AVACGTLLCAYARWGKLNDMLMFYAAVRRRDIVPS 239
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENT 171
+ V + ++ + + ++I + +Q+ A++ P Y+ I + K+G LE +
Sbjct: 240 ISVFNFMVSSLQKQKLHGKVIHLWEQM--LEANVAPNQFTYTVVIGSYAKEGMLEEAMDA 297
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
EM R F + AT + I ++ G E Y +K + +V Y K
Sbjct: 298 FGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNYTCASVLTLYYK 357
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
+ ++ + +++ +L+ Y + QR F + +AG D T
Sbjct: 358 NEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDKAGLLSDEQT 417
Query: 292 FNIRAVAFSRMSM---FWDLHLS-LEHMKHESVGPDLVTYGCVVDAYLDK 337
+ VA +++ M +D L L+ M+ +V P +Y ++ ++ K
Sbjct: 418 Y----VAMAQVHMNVQNYDRALQVLDAMRARNVKPSQFSYSALLRCHVAK 463
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 55/275 (20%), Positives = 99/275 (36%), Gaps = 30/275 (10%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P L+ Y G V A+V + E+L + L+ AY R G N+++
Sbjct: 168 PSVVAYTILLRLYGQVGKVKLAEVTFLEMLQAGCEPDAVACGTLLCAYARWGKLNDMLMF 227
Query: 137 IDQVSCRNADLLP--EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
V R D++P V++ +S KQ + + ++M+ + + T I Y
Sbjct: 228 YAAV--RRRDIVPSISVFNFMVSSLQKQKLHGKVIHLWEQMLEANVAPNQFTYTVVIGSY 285
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG- 253
++ G L E A+G +KR R + + E + +L G G + LG
Sbjct: 286 AKEGMLEEAMDAFGEMKRRRFVPE-------------EATYSLLISLCAKHGKGEEALGL 332
Query: 254 ------------NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
N +L Y N F M + PD + I + +
Sbjct: 333 YDEMKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGK 392
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
+ ++ D E + + D TY + +++
Sbjct: 393 LGLYEDAQRMFEEIDKAGLLSDEQTYVAMAQVHMN 427
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 14/254 (5%)
Query: 85 LMLCYANN---GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141
L C A+ F+ + + + +L + V V++ LMD Y R GC + ++ D++
Sbjct: 177 LKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMP 236
Query: 142 CRNADLLPEVYSRAISCFGKQGQ-LELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGS 199
+N +S I+C+ K G+ E +E + M++ SV +S T + + + F +
Sbjct: 237 VKNV----VSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAA 292
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
L + + + + R R L + + T G+ + D + +KD+ +LWN
Sbjct: 293 LEQGKLIHAYILR-RGLDSILPVISALITMYARCGKLESGQLIFD-RMHKKDV--VLWNS 348
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM-KHE 318
L+ SY + + + F M + GF P +F A S + + E M K
Sbjct: 349 LISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEH 408
Query: 319 SVGPDLVTYGCVVD 332
+ P + Y C+VD
Sbjct: 409 GIQPSVEHYACMVD 422
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/297 (18%), Positives = 119/297 (40%), Gaps = 25/297 (8%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEG---LLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
+L++ L +KK A +L+ + ++G P+ + ++ + G V +A ++ E+
Sbjct: 167 ALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEM 226
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
+ V + L+D + ++ ++I+ + + Y+ I + GQL
Sbjct: 227 MGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQL 286
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E LK+M G D T + I YY + G E + + + R +G +
Sbjct: 287 EEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVR-------KGQKPN 339
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-----------WNLLLLSYAGNFKMKSLQ 274
S Y + G + + +DL +L+ +N+L+ +YA + +
Sbjct: 340 STIY----HILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAM 395
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
F M + G PD+ +++ + D M E + P+++++ ++
Sbjct: 396 TAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLI 452
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 8/235 (3%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + +++ +G P+++ L+ YA G +++ + + + ++ + + L+
Sbjct: 324 ARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILIC 383
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
AY + G ++ ++ ++ R L P+V YS I K G++E +MVS G
Sbjct: 384 AYAKHGAVDKAMTAFTEM--RQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGL 441
Query: 181 SVDSATGNAFIIYYSRFGSLTEMET-AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
S + + + I G ++E A+ + R H D + + KE +
Sbjct: 442 SPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIH-PDAIFMNTIMDNLCKEGRVVEAQ 500
Query: 240 EFLRDV-GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+F V +G K + +N L+ Y KM ++ RM G PD T+N
Sbjct: 501 DFFDMVIHIGVKP-DVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYN 554
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 105/249 (42%), Gaps = 6/249 (2%)
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
C+A N V A +++++ + + +V + L+D Y ++ ++ ++ ++ + +
Sbjct: 216 CFAGNIDV--ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEP 273
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I+ ++G+++ + L EM RG+S+D T N I Y + G+ + +
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333
Query: 208 GRLKRSRHLIDKEGIRAVSFTY--LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+ RH + I S + K EFL + + + L+ ++
Sbjct: 334 AEML--RHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFS 391
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
M R M++ GF P + T+N D LE MK + + PD+V
Sbjct: 392 QKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVV 451
Query: 326 TYGCVVDAY 334
+Y V+ +
Sbjct: 452 SYSTVLSGF 460
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/301 (18%), Positives = 124/301 (41%), Gaps = 39/301 (12%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
+++R+ + SL+ + + + A + ++ ++ GL P+ T L+ ++ G
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV-- 151
++ EA V E+ + F SV + L++ + G + I++++ + + L P+V
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDM--KEKGLSPDVVS 452
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
YS +S F + ++ +EMV +G D+ T ++ I + +
Sbjct: 453 YSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI-------------QGFCEQR 499
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
R++ D + E LR VGL + + L+ +Y ++
Sbjct: 500 RTKEACD------------------LYEEMLR-VGLPPDEFT---YTALINAYCMEGDLE 537
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ M E G PD+ T+++ ++ S + L + +E P VTY ++
Sbjct: 538 KALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLI 597
Query: 332 D 332
+
Sbjct: 598 E 598
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 95/260 (36%), Gaps = 41/260 (15%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
D T L+ Y G +A V+ E+L SV + L+ + + G N + +
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFL 368
Query: 138 DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
DQ+ R Y+ + F ++G + L+EM GFS T NA I +
Sbjct: 369 DQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVT 428
Query: 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW 257
G +ME A L E +++ GL + +
Sbjct: 429 G---KMEDAIAVL-----------------------------EDMKEKGLSPDVVS---Y 453
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS---RMSMFWDLHLSLEH 314
+ +L + ++ + R M E G PD T++ F R DL+ E
Sbjct: 454 STVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLY---EE 510
Query: 315 MKHESVGPDLVTYGCVVDAY 334
M + PD TY +++AY
Sbjct: 511 MLRVGLPPDEFTYTALINAY 530
>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Cucumis sativus]
Length = 580
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/357 (19%), Positives = 149/357 (41%), Gaps = 32/357 (8%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
+D L+ G+ + A +++N + +G P+ + ALM Y A+ ++
Sbjct: 139 MDFVMLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRR 198
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP---EVYSRAISCFGK 161
+ S S ++ + F E + D + + +L +++ I F K
Sbjct: 199 MQSGGPEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKK 258
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
G E EM +RG + T N+ + + + + ++++ Y +++R+ D
Sbjct: 259 AGNYEKARKVFAEMAARGVPQTTVTYNSLMSFETNYKEVSKI---YDQMQRAGLQPD--- 312
Query: 222 IRAVSFTYL--------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
VS+ L +E + + E + D G+ +N+LL ++A + ++
Sbjct: 313 --VVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKA---YNILLDAFAISGMVEQA 367
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ F M PD+ ++ A+ S +K + P++VTYG ++
Sbjct: 368 KIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKG 427
Query: 334 Y-----LDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG-DFHSSSEAFLEFK 384
Y L+K + R + ++ + ++ + +++T + +A+GK DF S+ F E +
Sbjct: 428 YAKINNLEKMIKRYEEMKVNGIRVNQT-ILTT---IMDAYGKNKDFGSAVIWFNEIE 480
>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
Length = 662
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 125/308 (40%), Gaps = 20/308 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +++ T+ ++G+ D+ T ++ + + EA + ++ F + + L+
Sbjct: 258 ATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLH 317
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
AY +G E ++DQ+ + L P++ Y I K + + L E++ RG
Sbjct: 318 AYCNLGKMEETFHLLDQM--KTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGL 375
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ NA I Y R G ++ A +K + GI+ + TY +
Sbjct: 376 KPNVFIYNALIGGYGRNGDISGAIDAVETMKSN-------GIQPTNVTYGSLMYWMCHAG 428
Query: 241 FLRDVGL-------GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+ + DLG + + +++ Y KM F M G P+ T+
Sbjct: 429 LVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYT 488
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLD 353
A+S+ + + M V PD +TYG ++ A ++ G+ +G +++ D
Sbjct: 489 TLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLI-ARCSEKGGKTTQYG-QELHCD 546
Query: 354 DSPVVSTD 361
S ++S D
Sbjct: 547 LSKLLSAD 554
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 3/161 (1%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ GR A V T+KS G+ P N T +LM + G V EA+ ++ + +
Sbjct: 384 ALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQAREN 443
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ L V + ++ Y ++G E ++ +++ R Y+ + + K G E
Sbjct: 444 NVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEA 503
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
EMV G D+ T I S G T T YG+
Sbjct: 504 SKLFDEMVGSGVIPDNITYGTLIARCSEKGGKT---TQYGQ 541
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%)
Query: 41 QEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100
Q V ++++ + K A + + + GL P+ AL+ Y NG + A
Sbjct: 341 QPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAID 400
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160
E + S+ + LM G E +I Q N DL Y+ I +
Sbjct: 401 AVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYC 460
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
K G++ +EM SRG S + T + YS+ G+ E
Sbjct: 461 KLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEE 502
>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like, partial [Cucumis sativus]
Length = 594
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 120/299 (40%), Gaps = 39/299 (13%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V SL+ GR ++P A ++ + +K P+ + ALM Y +NG++
Sbjct: 174 KRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYL 233
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
+A + E+ +V + L+ A GR G I S++ R L + A
Sbjct: 234 PQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSA 293
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I + G+ E N + M ++ DS T F I S +++ E A
Sbjct: 294 IGSYMNIGEYEKAINLYRSMENKTTKPDSVT---FTILISGCCRMSKYEEA--------- 341
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
+ KE + D+ R L + +++ ++ +Y+ ++ +
Sbjct: 342 -----------LCFFKE---------MLDL---RIPLSSEIYSSMICAYSKQGQLVKAES 378
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F + +G PDL T+ A+S M+ + + M+ ++ D + ++ A+
Sbjct: 379 LFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAF 437
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 135/337 (40%), Gaps = 33/337 (9%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR- 126
+T+ +EG+ P+ + AL+ YA++G EA V++E+ S F V + L+ +GR
Sbjct: 136 STMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRS 195
Query: 127 --IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
E+ ++ + C+ +L+ Y+ + +G G L + L+EM G +
Sbjct: 196 QQPARAREVFDMMKRNKCK-PNLVS--YNALMDAYGSNGYLPQAVDILREMEQDGIHPNV 252
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLK-RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
+ + RFG +++ + R HL A+ + +GE+ +
Sbjct: 253 VSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIG-------SYMNIGEYEK 305
Query: 244 DVGLGRK------DLGNLLWNLLLLSYAGNFKMKSLQRE---FMRMSEAGFHPDLTTFNI 294
+ L R ++ + +L+ +G +M + F M + ++
Sbjct: 306 AINLYRSMENKTTKPDSVTFTILI---SGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSS 362
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLD- 353
A+S+ +K PDLVTY +++AY + + +M +
Sbjct: 363 MICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANN 422
Query: 354 ---DSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQR 387
DS S + +AF KG+ S+ E +++
Sbjct: 423 IQLDSIACSA---LMKAFNKGNQASNVLILAEIMKEK 456
>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
Length = 871
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 100/258 (38%), Gaps = 10/258 (3%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA----- 98
V C ++V R+ + A +LV ++ EGL P+ T A + G VL+A
Sbjct: 212 LVVCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARISALCKAGRVLDAYRIFN 271
Query: 99 --QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
Q WE L ++ V+ + + G +E ++D + C E Y+R +
Sbjct: 272 DMQEKWERGLPRPDQVTFDVM---LSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWL 328
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
S + G + + L+EM G +S T N + + G ++ +K
Sbjct: 329 SGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMT 388
Query: 217 IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276
D ++ Y E L ++ + +N+LL S ++ +R
Sbjct: 389 PDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERL 448
Query: 277 FMRMSEAGFHPDLTTFNI 294
RMSE G+ D + NI
Sbjct: 449 LERMSEKGYSLDTASCNI 466
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 70/348 (20%), Positives = 139/348 (39%), Gaps = 35/348 (10%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ + EG+ P++ T ++ G + + V + + S V + L+
Sbjct: 340 AQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLH 399
Query: 123 AY---GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
AY G N I+ + Q C Y+ + K G++ E L+ M +G
Sbjct: 400 AYCSEGNAAAANRILDEMAQKGCAPNSF---TYNVLLQSLWKAGRITEAERLLERMSEKG 456
Query: 180 FSVDSATGNAFIIYYSRFGSL-----------TEMETAYGRL------------KRSRHL 216
+S+D+A+ N I R L E A GRL R L
Sbjct: 457 YSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCL 516
Query: 217 IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG--NLLWNLLLLSYAGNFKMKSLQ 274
D+ + KE +F + L ++ +G KD+ ++L++ + Y + K
Sbjct: 517 PDRITYSTLVSALCKEGRFDEAKKKLLEM-IG-KDISPDSVLYDTFIHGYCKHGKTSLAV 574
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ M + G P T+N+ F ++ + MK + + P+++TY ++ ++
Sbjct: 575 KVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSF 634
Query: 335 LDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGK-GDFHSSSEAF 380
++ + L +M ++ P +++ + +AF K DF ++ F
Sbjct: 635 CERGMVNKAMPLLDEMLQNEIVPNITSFELLIKAFCKTSDFSAAQRVF 682
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 125/299 (41%), Gaps = 20/299 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ + + A + ++ +GL P+ T +L+ NNG + EA +W++++
Sbjct: 278 TLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGL 337
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
++ + L++ + + E + D VS +L+P V ++ I + K+G +E
Sbjct: 338 GLKPNIVTYNALINGFCKKKMMKEATKVFDDVS--KQELVPNVITFNTMIDAYCKEGMME 395
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ M+ G + +T N I R L + + + +G++
Sbjct: 396 EGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEM-------ENKGLKGDV 448
Query: 227 FTY-------LKERKFFMLGEFLRDV-GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
TY K K + L ++ LG K ++ +N L+ Y K+K+
Sbjct: 449 VTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKP-NHVTYNTLMDGYCMEGKLKAALNVRT 507
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
RM + P++ T+N+ + +++ + L M + + P+ TY V L+K
Sbjct: 508 RMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRLEMLEK 566
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 84/394 (21%), Positives = 154/394 (39%), Gaps = 44/394 (11%)
Query: 37 RYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC--ALMLCYANNGF 94
RY K F+D S V K + H + +++ +G P + L L+L Y N
Sbjct: 93 RYSKVRSFLD--SFV-----KNEKHTVSSVFHSLLLDGGRPGATALIIDMLVLAYVKN-- 143
Query: 95 VLEAQVVWEELLSS---SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151
LE +E + F LS+ + L+ A + ++ + ++ R
Sbjct: 144 -LELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNT 202
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
++ I+ + G+L E+ +++M + G S + T N + Y + GS +M A +K
Sbjct: 203 FNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMK 262
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD--VGLGRKDLGNL----------LWNL 259
L +K V+F L + F +D V +K + +N
Sbjct: 263 E--MLANKICPNEVTFNTL-------IDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNS 313
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
L+ N K++ + +M G P++ T+N F + M + + + +
Sbjct: 314 LINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQE 373
Query: 320 VGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS--PVVSTDPYVFEAFG-KGDFHSS 376
+ P+++T+ ++DAY + + F L LD+ P VST + K D ++
Sbjct: 374 LVPNVITFNTMIDAYCKEGMMEE-GFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAA 432
Query: 377 SEAFLEFKRQ----RKWTYRKLIAVYLKKQLRRN 406
E E + + TY LI K RN
Sbjct: 433 KELLNEMENKGLKGDVVTYNILIDGLCKNDKSRN 466
>gi|449451962|ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 121/288 (42%), Gaps = 15/288 (5%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ R +P + + GL+ + TL ++ + G ++ + ++ +
Sbjct: 196 TLMDGYLRASQPIVVLDTFRQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYGHCIKL 255
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+++V++ L+D YG+ G +E +I ++V+ ++ V++ I + K G ++
Sbjct: 256 GLGSNLRVVTCLIDMYGKFGDLDEAGTIFNEVAEKDV----IVWNCLIDNYAKNGLIKKA 311
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR---AV 225
+L M G +S+T I + G+++ K + D EG+ +
Sbjct: 312 VASLHLMKLEGMKPNSSTLAGLISACATSGAVSTG-------KYLANYADNEGLDLDVVL 364
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
T + F + D+ K+ W ++ Y + + + + RM E GF
Sbjct: 365 GTTLIGMYAKFGFLDKAIDIFDKMKNKDVKTWTAMITGYGDHGQTRKVMETLYRMEEEGF 424
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE-SVGPDLVTYGCVVD 332
P+ TF A+S + + + M +E + P + YGC++D
Sbjct: 425 RPNEITFLAVLNAYSHGGIVAEGMKCFKRMVYEYGITPKIEHYGCIID 472
>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 115/295 (38%), Gaps = 3/295 (1%)
Query: 53 DLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVL 112
DL R K A ++ +K G+LP+ T A++ Y G V +A +++E+L + +
Sbjct: 243 DLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLP 302
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
+V V L+D + + S+ + D VY+ I K G + L
Sbjct: 303 NVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLL 362
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
EM S S D T I + E + ++K R ++ Y KE
Sbjct: 363 SEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKE 422
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ ++ + + ++ L+ Y +K+ + M+ G PD+ T+
Sbjct: 423 YNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTY 482
Query: 293 NIRAVA-FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL-DKRLGRNLDF 345
A F +M L L M + P+ T+ C+VD + + RL +DF
Sbjct: 483 TALIDAHFKEANMKEALRL-YSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDF 536
>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic [Vitis vinifera]
Length = 701
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 74/164 (45%), Gaps = 3/164 (1%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ +GR K+P A + + + GL P T AL+ Y + +A +V++E+
Sbjct: 321 TLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEK 380
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
LSV + + L+ +G E +I + + + + +P+ +S I+ + G++
Sbjct: 381 GLELSVVLYNTLLAMCADVGYTEEAAAIFEDMK-SSGNCMPDSWTFSSLITIYSCSGKVS 439
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
E L M+ GF + + I Y + E+ + RL
Sbjct: 440 EAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRL 483
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 56/302 (18%), Positives = 112/302 (37%), Gaps = 30/302 (9%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
P+ A + + G PD+ T A++ Y G V A +++ + + + S
Sbjct: 227 PNKAVEWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFST 286
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L+ YG G F+ +++ +++ +Y+ + G+ + +N KEM + G
Sbjct: 287 LIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNG 346
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
T A + Y R + Y +K ++G+ Y L
Sbjct: 347 LQPSWGTYAALLRAYGRARYAEDALIVYKEMK-------EKGLELSVVLY------NTLL 393
Query: 240 EFLRDVGLGR---------KDLGNLL---WNL--LLLSYAGNFKMKSLQREFMRMSEAGF 285
DVG K GN + W L+ Y+ + K+ + M EAGF
Sbjct: 394 AMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGF 453
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD---KRLGRN 342
P++ + + + ++ + + + + PD GC+++ + LG+
Sbjct: 454 EPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKL 513
Query: 343 LD 344
+D
Sbjct: 514 ID 515
>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 4/228 (1%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL P ST +L++ + NG + EA + +++ ++ + L+D + + G
Sbjct: 296 GLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGA 355
Query: 134 ISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
S+ ++ R + P+V +S I KQG +E N EM+ +G ++ N+ I
Sbjct: 356 QSLWGEMERRG--IFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLI 413
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
+ + G L E ++ L D + K+ + D+
Sbjct: 414 CGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLS 473
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+ +N L+ Y F M + RM +G +PDLTT+NIR F
Sbjct: 474 PDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGF 521
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 54/279 (19%), Positives = 106/279 (37%), Gaps = 6/279 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + + + +GL P +++ Y+ G +A ++ ++ S S L+
Sbjct: 250 AMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLM 309
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G E +I Q+ + + ++ + F K+G + ++ EM RG
Sbjct: 310 GLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFP 369
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLG 239
D +AFI S+ G + E + + R + + ++ + K K L
Sbjct: 370 DVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLE 429
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+ +R GL D+ N+++ +M+S FM M + G PD+ T+N +
Sbjct: 430 KVMRHRGL-LPDI--FTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGY 486
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+ + + M PDL TY + + R
Sbjct: 487 CKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSR 525
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 113/277 (40%), Gaps = 40/277 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A V ++ EG+ P+ +T A++ Y ++G V A+ ++ +S ++ +V + S ++
Sbjct: 177 AVSCVEEMEIEGIFPNAATFSAIISGYGSSGNVEAAEKWFQRSVSENWNHNVAIYSSIIH 236
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK---QGQLELMENTLKEMVSRG 179
AY + G +++ + + + +Y+ + + + + Q + + LK + G
Sbjct: 237 AYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHKLKARIDTG 296
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
S + T I Y++ G + ++A+ F KE K
Sbjct: 297 LSPTAVTYGCLINLYTKLGKM---------------------MKALEFC--KEMK----- 328
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLS-YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+ + L R L+ + L +A F + F MSEAG PD T+NI A
Sbjct: 329 --AQGITLNRNTYSMLVDGYVQLGDFANAFSV------FEDMSEAGIEPDWVTYNILLKA 380
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
F + L MK P + TY ++D ++
Sbjct: 381 FCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFM 417
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 122/302 (40%), Gaps = 49/302 (16%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL P T L+ Y G +++A +E+ + L+ S L+D Y ++G F
Sbjct: 296 GLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANA 355
Query: 134 ISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
S+ + +S A + P+ Y+ + F K Q+ L M +RG S T I
Sbjct: 356 FSVFEDMS--EAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITII 413
Query: 192 IYYSRFG-------SLTEMETA------------------YGRLKRSRHLIDKEGIRAV- 225
+ + G +++EM+ A G++ R+ +ID+ + V
Sbjct: 414 DGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQ 473
Query: 226 ----SFTYLKERKFFMLGEFLRDVGLGRKDL---GNLLWNLLLLSYAGNFK-------MK 271
S+T L + F +GE +GL K L + ++SYA K M+
Sbjct: 474 PNFRSYTTLMQ-GFASIGE----IGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQ 528
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ M+ AG + FN +++ W+ + ++ M+ E PD+ +Y V
Sbjct: 529 NAIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFV 588
Query: 332 DA 333
+A
Sbjct: 589 NA 590
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 102/243 (41%), Gaps = 45/243 (18%)
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K G+ EL+ +EM+S G S T FG+L + G L R++ + D+
Sbjct: 159 KTGRFELLWRIYEEMISNGLSPSVIT----------FGTLIDGCCRQGDLLRAQEMFDEM 208
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
++ + T +++ +L+ + K++ + M
Sbjct: 209 RVKGIVPTV-------------------------IVYTILIRGLCSDNKIEEAESMHRAM 243
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA---YLDK 337
E G +P++ T+N + +++ + M E + PD+VT+G ++D + +
Sbjct: 244 REVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEM 303
Query: 338 RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR----QRKWTYR 392
+ RNL + K ++ +P ++ + +A+ K GD + FLE +R +TY
Sbjct: 304 KAARNLFVNMIKFSV--TPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYS 361
Query: 393 KLI 395
LI
Sbjct: 362 ILI 364
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 58/297 (19%), Positives = 122/297 (41%), Gaps = 20/297 (6%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L++ R+ A ++ + ++ +G++P L+ ++ + EA+ + +
Sbjct: 186 GTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMRE 245
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQGQL 165
+V + LMD Y ++ + + + + L+P+V + I G K G++
Sbjct: 246 VGVYPNVYTYNTLMDGYCKLANAKQALRLYQDM--LGEGLVPDVVTFGILIDGLCKFGEM 303
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR-------HLID 218
+ N M+ + + A N+ I Y + G ++E + L+R + I
Sbjct: 304 KAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSIL 363
Query: 219 KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREF 277
G+ +VS T F E + G+ L N + +N L+ KM
Sbjct: 364 IRGLCSVSRTEEAGNIF----EKMTKEGI----LANSVTYNSLIDGCCKEGKMDKALEIC 415
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+M+E G P++ TF+ + ++ M +S+ PD+VTY ++D +
Sbjct: 416 SQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGH 472
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 86/406 (21%), Positives = 155/406 (38%), Gaps = 40/406 (9%)
Query: 30 DLARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D K+I K++G + S++ L R K A + + + +G+LPD L
Sbjct: 741 DKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTL 800
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ + G + A + E+ S V + ++ + +IG E + ++ C+
Sbjct: 801 IDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL 860
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+ ++ I+ + K G ++ M+ G S + T I + G L ++
Sbjct: 861 EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL---DS 917
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLK-----------ERKFFMLGEFLRDVGLGRKDLGN 254
A L H + K G++ FTY E ++GEF GL +
Sbjct: 918 ANELL----HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF-EAAGL---NADT 969
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ + L+ +Y + +M Q M G P + TFN+ F M D L
Sbjct: 970 VTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNW 1029
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFH 374
M + + P+ T+ +V Y + NL + S V D +E KG
Sbjct: 1030 MLAKGIAPNATTFNSLVKQYC---IRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCK 1086
Query: 375 SSS--EAFLEFKRQRK-------WTYRKLIAVYLKKQ--LRRNQIF 409
+ + EA+ F+ + TY LI +LK++ L ++F
Sbjct: 1087 ARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVF 1132
>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 127/332 (38%), Gaps = 32/332 (9%)
Query: 89 YANNGFVLEAQVVWEELLSSSFV-LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ ++G EAQ + +E+L + V + L++A+ + G F E + D++ R
Sbjct: 265 FCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIP 324
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
YS I F KQ +L+ E+ M ++G S D T N I Y R + +
Sbjct: 325 STITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDG---- 380
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLK-ERKFFMLGEFLRDVGLGRKDLGN------LLWNLL 260
+ H + + G+ A + TY F +G+ L ++ + + + N L
Sbjct: 381 ---IKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTL 437
Query: 261 LLSYAGNFKMKSLQREFMRMSEA-----------GFHPDLTTFNIRAVAFSRMSMFWDLH 309
L N K+K F M ++ G PD+ T+NI F +
Sbjct: 438 LDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 497
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKMNLDDSPVVSTDPYVFEAF 368
E M H + PD +TY V+ + RL S + SP V T + +
Sbjct: 498 ELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGY 557
Query: 369 GK-GDFHSSSEAFLEFKRQ----RKWTYRKLI 395
K G E F E R+ TY LI
Sbjct: 558 CKAGRVDDGLELFCEMGRRGIVANAITYITLI 589
>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 905
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/227 (19%), Positives = 99/227 (43%), Gaps = 14/227 (6%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
+V + L+D YG++G + + I ++ + + + Y+ I GQ
Sbjct: 279 NVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAVY 338
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV-SFTYL- 230
K M+ G+S ++ T NA I Y + G L ++ + + ++ K R+V +++ L
Sbjct: 339 KRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVF------QEMVHKGCERSVITYSSLI 392
Query: 231 ----KERKFFMLGEFLRDVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
K ++ + E ++ G + N + +N L+ + A + + F +M + G
Sbjct: 393 SACEKAGQWELALELFNEMA-GEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGC 451
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
PD+ TF ++ + + + E M+ + PD + + ++D
Sbjct: 452 TPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIID 498
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 88/207 (42%), Gaps = 9/207 (4%)
Query: 28 NGDLARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC 83
N LA + +Q+G V +L++ G+ +++ +K+EG+ P T
Sbjct: 260 NCPLALDTYNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYN 319
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
L++ G EA V++ +L + + + L+ AYG+ G ++++ + ++ +
Sbjct: 320 TLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHK 379
Query: 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
+ YS IS K GQ EL EM G ++ T N+ I ++ +
Sbjct: 380 GCERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKA 439
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTYL 230
+ ++++ D V+FT L
Sbjct: 440 SEVFEQMQKGGCTPD-----VVTFTAL 461
>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
Length = 663
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 119/290 (41%), Gaps = 36/290 (12%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+++ GLLPD T +L+ Y G EA +++ +L + +V + L+D Y R+G
Sbjct: 363 MRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGD 422
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG--QLELMENTLKEMVSRGFSVDSATG 187
E + +++ LP+VY+ I G L + EM+S+G D
Sbjct: 423 LEEARRLKEEMV--EQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAY 480
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRS---RHLIDKEGIRAVSFTY------------LKE 232
N I E G + +S R +I EGI + + TY LK+
Sbjct: 481 NTRIC----------AEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKD 530
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ M+ + GL + D + + L+ ++ ++ ++ F M G P T+
Sbjct: 531 AEELMMQ--MISNGL-QPDC--ITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTY 585
Query: 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
+ A+ R + + M E V P+ +TY ++ A R+GR
Sbjct: 586 TVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALC--RMGRT 633
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 106/280 (37%), Gaps = 30/280 (10%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+++EG++P T A++ +G + AQ + E+ + + V + L++ Y + G
Sbjct: 328 MENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGN 387
Query: 130 FNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
E + + + R A L P V Y+ I + + G LE +EMV +G D T
Sbjct: 388 QKEALLLFGDL--RRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYT- 444
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTYLKE----------RK 234
+ L + L +R D+ +G+R F Y K
Sbjct: 445 ---------YTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISK 495
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
F L E + G+ + +N+L+ +K + M+M G PD T+
Sbjct: 496 SFQLREVIMLEGISSD---TVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTC 552
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
A + M + + P VTY ++ AY
Sbjct: 553 LIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAY 592
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 26/219 (11%)
Query: 138 DQVSCRNADLL-----PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSV--DSATGN 188
D +S +A++L P + Y+ + F K+G+ + ++ LKEM +RG S + T N
Sbjct: 213 DDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYN 272
Query: 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG 248
I +R G L E ++ S+ +A SFTY + F++ V
Sbjct: 273 VVIAGLARKGYLEEAAELVEEMRLSK--------KASSFTYNPLITGLLARGFVKKVDDL 324
Query: 249 RKDLGN-------LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ ++ N + +N ++ + ++++ Q +F+ M G PD+ T+N + +
Sbjct: 325 QLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCK 384
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
+ L ++ + P ++TY ++D Y RLG
Sbjct: 385 AGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYC--RLG 421
>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 540
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 10/221 (4%)
Query: 29 GDLARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
D A +++ K+ G + S++ R +P A +L ++ ST
Sbjct: 250 ADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYIT 309
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE---IISIIDQVS 141
++ Y+ GF A+ + ++ F +V S L+D YG++G E + S + Q
Sbjct: 310 MLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQG 369
Query: 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
C+ +L+ VY+ + +GK G++ E + E+ D+ T I Y+R G
Sbjct: 370 CK-GNLI--VYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFE 426
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
E + + + +D+ + + Y K R++ L E L
Sbjct: 427 ECIRVFEQHRADGLKLDRILVAIMINVYGKARQYSKLAELL 467
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/339 (19%), Positives = 125/339 (36%), Gaps = 61/339 (17%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ + G++ A + + +K EGLLPD+ T CA++ G + + +E+ +
Sbjct: 100 LILEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAG 159
Query: 110 FVLSVQVLSDLMDAYGRIG----------------------CFNEIISIIDQVSCRNADL 147
S L+D +G+ G +N +I +V +
Sbjct: 160 IKPDQVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQAT 219
Query: 148 L-------------PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD----SATGNAF 190
L P ++ I + K + + LK M G + + NAF
Sbjct: 220 LVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAF 279
Query: 191 IIYYSRFGSLT---EMETAYGRLKRSRHLI-----DKEGIRAVSFTYLKERKFFMLGEFL 242
+ G++ EM+ + R S ++ K G + + L + +
Sbjct: 280 MRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLAK---------M 330
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
R +G R + ++ L+ Y K++ R F M + G +L +N + +
Sbjct: 331 RQLGFRRNVVA---YSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKA 387
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
D + +K + PD VTY +++AY RLGR
Sbjct: 388 GRINDAERLMAELKDSKLVPDTVTYTTLINAY--NRLGR 424
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 4/157 (2%)
Query: 32 ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A +++ +Q GF V ++L++ G+ K A +L +T+K +G + ++
Sbjct: 323 AEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLD 382
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
Y G + +A+ + EL S V + L++AY R+G F E I + +Q L
Sbjct: 383 MYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKL 442
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
+ + I+ +GK Q + L+ M G D+
Sbjct: 443 DRILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDT 479
>gi|242036455|ref|XP_002465622.1| hypothetical protein SORBIDRAFT_01g042420 [Sorghum bicolor]
gi|241919476|gb|EER92620.1| hypothetical protein SORBIDRAFT_01g042420 [Sorghum bicolor]
Length = 817
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 121/286 (42%), Gaps = 32/286 (11%)
Query: 64 HQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123
++V + E + D TL +L+ CY N G +A V + + ++V VL+ L A
Sbjct: 195 QEMVASCGEESV--DRYTLTSLLNCYCNAGRPEDASAVLQRMSERAWV-DEHVLTMLAVA 251
Query: 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
+ + G + + +I ++ + + + F +QG++++ + +M S GFSVD
Sbjct: 252 FSKWGKVEDAVELIGRMEALGMQPSEKTLTVLVHGFARQGRVDVAMDMFDKMASYGFSVD 311
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
A + I + + Y +KR R D ++ + + ++ F +G F+
Sbjct: 312 LAMYSVLIEGLCDGNEMGKAVKLYEDMKRDRVTPDVRLLKKMIEAFCRQGDFSTVGPFIN 371
Query: 244 DVGLGRKD-LGNLLWNLLL--LSYAGNFK-----MKSLQREFMRMSE---AGFH------ 286
+ + K LL+N++L L+ G + + S+ R R S+ G H
Sbjct: 372 ENAVHLKPGSAVLLYNVILEGLTNHGEVEAASQLLSSMVRGGQRGSDDDTVGVHIVVISE 431
Query: 287 ---PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
P+ +FNI ++ DL L+L D+V GC
Sbjct: 432 DVKPNSDSFNIVVCGLCKVKKL-DLALALTK--------DMVGLGC 468
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLP--DNSTLCALMLCYANNGFVLEAQVVWEELL 106
SL + R+K A L+ +++ P N T LC++ G + EA +E+L
Sbjct: 512 SLFYGICRRKDTSAAADLLREMRTSSHKPWIKNCTEMVQQLCFS--GRITEALQFLDEML 569
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQ 164
F+ + S M+ +IG + + +S + LP+V + I + F K G+
Sbjct: 570 KLGFLPDIVTYSAAMNGMCKIGETENALGLFRDISSKC--YLPDVVAHNILINGFRKAGK 627
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ + ++EM+S+G T N I + + G +
Sbjct: 628 FDEAQEIMEEMLSKGLFPSVVTYNLMIDIWCKSGKI 663
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/372 (20%), Positives = 144/372 (38%), Gaps = 48/372 (12%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+S++ L + + A +++NT+ G++PD T +++ Y ++G EA +++ S
Sbjct: 240 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 299
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+V S LM+ + G E I D ++ R + Y + + +G L
Sbjct: 300 DGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVE 359
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSR-------------------------FGSLTE 202
M L MV G D N I Y++ +G++ +
Sbjct: 360 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419
Query: 203 METAYGRLKRS----RHLIDKEGIRAVSFTYLK-----------ERKFFMLGEFLRDVGL 247
+ G + + +ID EG+ Y ++ ++ E L D G+
Sbjct: 420 VLCKSGSVDDAMLYFEQMID-EGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML-DRGI 477
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
L + +N ++ S+ ++ ++ F M G PD+ T+N +
Sbjct: 478 C---LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDE 534
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEA 367
L M V PD+VTYG +++ Y R+ R +D L+ S VS + +
Sbjct: 535 ATKLLASMVSVGVKPDIVTYGTLINGYC--RVSR-MDDALALFKEMVSSGVSPNIITYNI 591
Query: 368 FGKGDFHSSSEA 379
+G FH+ A
Sbjct: 592 ILQGLFHTRRTA 603
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 76/201 (37%), Gaps = 28/201 (13%)
Query: 147 LLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
+LP+V YS I+ K ++ L MV G D T N+ + Y G E
Sbjct: 232 ILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE-- 289
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTY-------------LKERKFFMLGEFLRDVGLGRKD 251
A G LK+ R +G+ TY + RK F + + GL D
Sbjct: 290 -AIGTLKKMR----SDGVEPNVVTYSSLMNYLCKNGRSTEARKIF---DSMTKRGL-EPD 340
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ + LL YA + + M G PD FNI A+++ L
Sbjct: 341 IAT--YRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLV 398
Query: 312 LEHMKHESVGPDLVTYGCVVD 332
M+ + P++V YG V+D
Sbjct: 399 FSKMRQHGLNPNVVCYGTVID 419
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 9/247 (3%)
Query: 92 NGFVLE-----AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
NGF E A + E+L + V S ++ A + ++ + +++ + +N
Sbjct: 209 NGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTM-VKNG- 266
Query: 147 LLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
++P+ Y+ + + GQ + TLK+M S G + T ++ + Y + G TE
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ + + D R + Y + + L + + ++N+L+ +Y
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAY 386
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
A K+ F +M + G +P++ + + D L E M E + P++
Sbjct: 387 AKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNI 446
Query: 325 VTYGCVV 331
+ Y ++
Sbjct: 447 IVYTSLI 453
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 6/171 (3%)
Query: 27 KNGDLARKIIRYR--KQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K+G+ + I RY K +G V +++ L + + +A ++ + +KS G+ PDN
Sbjct: 438 KSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNI 497
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T ++ C + EA V+ E++ + V V ++ L+D + G NE I ++
Sbjct: 498 TYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHEL 557
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
N D Y+ ++ G++G+++ + + L+EM S + + T N +
Sbjct: 558 KEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVL 608
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 118/298 (39%), Gaps = 15/298 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+ L+ L + KK AH+LV +S G+ + AL+ + + A+ ++ E+
Sbjct: 745 SPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKR 804
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ ++DA G+ +++ + ++ C+ + Y+ IS K L
Sbjct: 805 LGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYE 864
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL-------KRSRHLIDKE 220
+ +++S GFS T + + G + + E + + R+ + I
Sbjct: 865 AMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLN 924
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
G R T K L + + D G+ D+ + + L AG ++ F ++
Sbjct: 925 GYRLAGNT----EKVCELFQNMVDQGI-NPDIKSYTVLIGALCTAG--RLNDSLSYFRQL 977
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+E G PDL T+N+ R + M+ + P+L TY ++ YL K
Sbjct: 978 TELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLI-LYLGKE 1034
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 66/344 (19%), Positives = 120/344 (34%), Gaps = 45/344 (13%)
Query: 32 ARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A KI++ + EG V L++ L + A + +K+ PD T L+
Sbjct: 270 AYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLD 329
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+NG +W + + + +V + ++DA ++G +E + DQ+ + +
Sbjct: 330 KCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEP 389
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ IS F K +L M G + + T FI YY + G + Y
Sbjct: 390 QQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRY 449
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF---LRDVGLGRKDLGNLLWNLLLLSY 264
+K + D AV ++ K + M L+ +G+ N+ + +++
Sbjct: 450 ELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPD---NITYTMMIKCC 506
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDL----------------------------------- 289
+ + F M E PD+
Sbjct: 507 SKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTD 566
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
T+N R ++ LE M S P+L+TY V+D
Sbjct: 567 CTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDC 610
>gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 989
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 70/164 (42%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ G+ K A + +K++G PD T +L+ A V +AQ + E+L S
Sbjct: 518 MIKAYGKAKLHEKALSIFKGMKNQGTWPDECTYNSLIQMLAGVDLVDDAQRILAEMLDSG 577
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+ +Y R+G ++ + + + + VY I+ F + G +E
Sbjct: 578 CKPGCKTYAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFAESGMVEEAI 637
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
K M G + + I YS+ G L E Y ++K S
Sbjct: 638 QYFKLMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDS 681
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 120/282 (42%), Gaps = 20/282 (7%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + +K G PD + +++ A+ G V EA+ ++ +L V + +M
Sbjct: 671 ARRVYDKMKDSGGGPDVAASNSMLSLCADLGIVSEAESIFNDLREKG-TCDVISFATMMY 729
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEM-VSRG 179
Y +G +E I + +++ R + LL + +++ ++C+ GQL EM V R
Sbjct: 730 LYKGMGMLDEAIEVAEEM--RESGLLRDCTSFNQVLACYAADGQLRECCELFHEMLVERK 787
Query: 180 FSVDSATGNAFIIYYSRFG----SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
+D T + G ++ +++TAY K + I A F+ + +
Sbjct: 788 LLLDWGTFKTLFTLLKKGGVPSEAVAQLQTAYNEAKP----LATPAITATLFSAMGLYAY 843
Query: 236 FM--LGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+ E RD + R+ + +N ++ +Y+ + + + +MRM E G PD+ T
Sbjct: 844 ALESCQELTRD-EIPRE---HYAYNAVIYTYSASGDIDMALKTYMRMQEKGLEPDVVTQA 899
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ + M + + + P+ + V DAY+
Sbjct: 900 YLVGIYGKAGMVEGVKRVHSRLTFGELEPNQSLFKAVRDAYV 941
>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/279 (20%), Positives = 121/279 (43%), Gaps = 22/279 (7%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + N +K+ GL PD + +L+ Y + +A+ V+E + ++ + ++D
Sbjct: 366 ALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMID 425
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLELMENTLKEMVSRGF 180
AYG G E + ++ ++ + P S ++ G+ + ++ L+ R
Sbjct: 426 AYGSNGLLAEAVEVLREM--EQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHI 483
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERKF 235
+++ N+ I Y G + + Y +++S+ + D AV+FT L K K+
Sbjct: 484 KLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPD-----AVTFTVLISGCCKMTKY 538
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
EFL ++ +L + +Y+ K+ + F +M AG PD+ T+ +
Sbjct: 539 CEALEFL-------SEMMDLKIPMTKEAYSSG-KITEAESMFNKMKMAGCSPDVVTYTMM 590
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
A++ + L+ M+ ++ PD + ++ A+
Sbjct: 591 LHAYNAAEHWKKACALLQEMEEYNIQPDTIACSALMRAF 629
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 111/274 (40%), Gaps = 30/274 (10%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T AL+ + +G A + E++L + S ++L++A G G + E + +
Sbjct: 168 PDAETCNALINAHGRSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKL 227
Query: 137 IDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+++ + P++ + I S + Q + + M D+ T N I
Sbjct: 228 CKKMT--ENGVGPDLVTHNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTTLNIIIYCL 285
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE-----------RKFF--MLGEF 241
++ G + E A G K R + V+FT + R F M+ E
Sbjct: 286 TKLG---QYEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEG 342
Query: 242 LRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L+ N++ +N L+ +YA + K F + +G PD+ ++ ++
Sbjct: 343 LKP---------NIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYG 393
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R E MK + + P++V+Y ++DAY
Sbjct: 394 RSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAY 427
>gi|147778635|emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]
Length = 466
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 26/214 (12%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G V +A + ++ + F LS+ + +++A G +G E +I ++ L VY
Sbjct: 56 GDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLRVY 115
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + ++G LEL + L EM + G + AT A + YY R G L ++ G + R
Sbjct: 116 NVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSR 175
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK-------------DLGNLLWNL 259
+G SF Y K ++G + RD G+ +K L ++N
Sbjct: 176 -------DGFGPDSFVYSK-----VIGVY-RDNGMWKKAMEIVREIREMGVSLDKRIYNS 222
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
++ ++ ++ F +M E G PD+ T+N
Sbjct: 223 IIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWN 256
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/279 (17%), Positives = 115/279 (41%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RK LA +++ + + G+ + +T AL+ Y G + + V E+ F
Sbjct: 124 RKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSF 183
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
V S ++ Y G + + + I+ ++ L +Y+ I FGK G+L ++M
Sbjct: 184 VYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKM 243
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
G D T N+ I ++ + G + + + +++ D + + ++ K+
Sbjct: 244 QEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKW 303
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
++ ++ ++ +L+ Y + + + + G P + F +
Sbjct: 304 DVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVL 363
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
A A+++ + L+ M+ E + P+L+ +++A+
Sbjct: 364 ANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAF 402
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A LV+ G+ + + ++ +KSEG+ P S C L YA G + V + + +
Sbjct: 326 AILVDIYGQYGRFQGPEECISALKSEGIQPSASMFCVLANAYAQQGLCEQTVKVLQLMET 385
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQL 165
++ +L+ L++A+G G E +S+ + D +PE+Y + C +
Sbjct: 386 EGIEPNLIMLNMLINAFGIAGRHLEALSVYHHIK----DTVPEIYEEMESAGCTPDRKAR 441
Query: 166 ELMENTL 172
E+++ L
Sbjct: 442 EMLQTAL 448
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 125/317 (39%), Gaps = 42/317 (13%)
Query: 32 ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC--- 88
AR + +++ V SL+ + P A L+ + P+ T +L+
Sbjct: 105 ARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164
Query: 89 YANNG-----FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
YA++G L + W E V V S L+D Y R G + ++ D++ +
Sbjct: 165 YADSGTGRQIHALAVKCGWHE--------DVYVGSALLDMYARCGKMDMATAVFDKLDSK 216
Query: 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
N ++ IS F ++G E T EM+ GF T ++ +R G+L +
Sbjct: 217 NG----VSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG 272
Query: 204 ETAYGRLKRSRH---------LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
+ + + +SR L+D + A S + + RK F + KDL
Sbjct: 273 KWVHAHVIKSRQKLTAFVGNTLLD---MYAKSGSMIDARKVFDR--------VDNKDL-- 319
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ WN +L ++A K F M ++G + + TF A S + + E
Sbjct: 320 VTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEM 379
Query: 315 MKHESVGPDLVTYGCVV 331
MK + P++ Y VV
Sbjct: 380 MKEYDLEPEIDHYVTVV 396
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/372 (20%), Positives = 144/372 (38%), Gaps = 48/372 (12%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+S++ L + + A +++NT+ G++PD T +++ Y ++G EA +++ S
Sbjct: 240 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 299
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+V S LM+ + G E I D ++ R + Y + + +G L
Sbjct: 300 DGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVE 359
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSR-------------------------FGSLTE 202
M L MV G D N I Y++ +G++ +
Sbjct: 360 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419
Query: 203 METAYGRLKRS----RHLIDKEGIRAVSFTYLK-----------ERKFFMLGEFLRDVGL 247
+ G + + +ID EG+ Y ++ ++ E L D G+
Sbjct: 420 VLCKSGSVDDAMLYFEQMID-EGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML-DRGI 477
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
L + +N ++ S+ ++ ++ F M G PD+ T+N +
Sbjct: 478 C---LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDE 534
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEA 367
L M V PD+VTYG +++ Y R+ R +D L+ S VS + +
Sbjct: 535 ATKLLASMVSVGVKPDIVTYGTLINGYC--RVSR-MDDALALFKEMVSSGVSPNIITYNI 591
Query: 368 FGKGDFHSSSEA 379
+G FH+ A
Sbjct: 592 ILQGLFHTRRTA 603
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 76/201 (37%), Gaps = 28/201 (13%)
Query: 147 LLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
+LP+V YS I+ K ++ L MV G D T N+ + Y G E
Sbjct: 232 ILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE-- 289
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTY-------------LKERKFFMLGEFLRDVGLGRKD 251
A G LK+ R +G+ TY + RK F + + GL D
Sbjct: 290 -AIGTLKKMR----SDGVEPNVVTYSSLMNYLCKNGRSTEARKIF---DSMTKRGL-EPD 340
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ + LL YA + + M G PD FNI A+++ L
Sbjct: 341 IAT--YRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLV 398
Query: 312 LEHMKHESVGPDLVTYGCVVD 332
M+ + P++V YG V+D
Sbjct: 399 FSKMRQHGLNPNVVCYGTVID 419
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 9/247 (3%)
Query: 92 NGFVLE-----AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
NGF E A + E+L + V S ++ A + ++ + +++ + +N
Sbjct: 209 NGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTM-VKNG- 266
Query: 147 LLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
++P+ Y+ + + GQ + TLK+M S G + T ++ + Y + G TE
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ + + D R + Y + + L + + ++N+L+ +Y
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAY 386
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
A K+ F +M + G +P++ + + D L E M E + P++
Sbjct: 387 AKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNI 446
Query: 325 VTYGCVV 331
+ Y ++
Sbjct: 447 IVYTSLI 453
>gi|326487288|dbj|BAJ89628.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 461
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 136/330 (41%), Gaps = 51/330 (15%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E L + LA +L+ + +G+ + T L+ YA G + ++ V E+
Sbjct: 127 ALLEGLLARAHLRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRW 186
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
L S L+ Y G + + +I ++ +L ++Y+ I FGK GQL
Sbjct: 187 GIRLDTAGYSTLVRLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADA 246
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT---------EMETAYGRLKRSRHLIDK 219
++M +G D T NA I ++ R G++ + E Y K +I++
Sbjct: 247 RKMFEKMRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINR 306
Query: 220 EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL-LLSYAGNFK-----MKSL 273
G + + LKE L + +R+ G K+ G + L+ + G+F+ + +L
Sbjct: 307 LGEQG-KWDELKE-----LFDKMRNRGF--KESGAIYAVLVDIYGQYGHFRDAQECVAAL 358
Query: 274 QREFMRMSEAGF----------------------------HPDLTTFNIRAVAFSRMSMF 305
+ E +++S + F P+L N+ AFS
Sbjct: 359 KAENLQLSPSIFCVLANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRH 418
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ +H+K + PD+VTY ++ A++
Sbjct: 419 LEAQAVFQHIKDSGMSPDVVTYTTLMKAFM 448
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/282 (18%), Positives = 117/282 (41%), Gaps = 14/282 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ +G +PD T C+L+ G V A ++ E + + V + L+
Sbjct: 309 ATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVK 368
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G + ++++++ + Y+ I+ K G + + + + +G+
Sbjct: 369 GLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLP 428
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKF 235
D T N I Y + ++++A ++R + + GI + TY K K
Sbjct: 429 DVFTFNTLIDGYCK---RLKLDSALQLVER----MWEYGIAPDTITYNSVLNGLCKAGKV 481
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
+ E +++ L + +N+L+ ++ + KM+ + ++MS+ G HPD +FN
Sbjct: 482 NEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL 541
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
F R +L + ++ + T+ ++ A+ K
Sbjct: 542 IYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGK 583
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 19/261 (7%)
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
A++ Y+ G V +A++V++ + + V + ++D Y R G + + + D++ R
Sbjct: 111 AILGMYSKRGHVRKARLVFDYMEDKNSV----TWNTMIDGYMRNGQVDNAVKVFDEMPER 166
Query: 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
DL+ ++ I+ F K+G E +EM G + D A + + G+L+
Sbjct: 167 --DLIS--WTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALAACTNLGALS-- 220
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG--EFLRDVGLGRKDLGNLLWNLLL 261
+G L R+++ ++ V + + G EF R V + + WN ++
Sbjct: 221 ---FG-LWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVI 276
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE-SV 320
+ +A N F +M E GF PD TF A S + + + + MK + +
Sbjct: 277 VGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRI 336
Query: 321 GPDLVTYGCVVDAYLDKRLGR 341
P + +GC+VD Y R GR
Sbjct: 337 SPRIEHFGCLVDLY--SRAGR 355
>gi|162460162|ref|NP_001106062.1| pentatricopeptide repeat 5 [Zea mays]
gi|154520281|gb|ABS82814.1| pentatricopeptide repeat protein 5 [Zea mays]
gi|413924537|gb|AFW64469.1| pentatricopeptide repeat 5 [Zea mays]
Length = 499
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 95/238 (39%), Gaps = 41/238 (17%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+YS+ IS G++GQ+ + +M + G D++ N+ I
Sbjct: 126 IYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLI------------------- 166
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
HL ++ +A++ LG F + + R + +N+LL ++A
Sbjct: 167 --GAHLHSRDKTKALAKA---------LGYFEKMKCIERCQPTIVTYNILLRAFAQAGDT 215
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
K + F + E+ PD+ T+N A+ + M ++ L MK PD++T+ +
Sbjct: 216 KQVDMLFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNIL 275
Query: 331 VDAYLDKRLGRNLDFG------LSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+D+Y GR F S + + P T + +G+ +E+ +E
Sbjct: 276 IDSY-----GRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVE 328
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 71/158 (44%)
Query: 23 QTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
QT K + + ++R +++ S++ + GR + A +V ++ G P+ T
Sbjct: 283 QTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQ 342
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
L++ YA+ V +A+ V++EL++S + + L+ +++AY G E ++D
Sbjct: 343 ECLIIMYAHCDCVSKARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQ 402
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ Y + K L++ LK M +G
Sbjct: 403 QCVVPNGSTYKLLYKAYTKANDKLLVQKLLKRMNKQGI 440
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/341 (20%), Positives = 144/341 (42%), Gaps = 28/341 (8%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
A +++ + +G +PD+ST ++ LC A+ V +A ++EE+ + V SV + L
Sbjct: 444 AFKIICEMMGKGFVPDDSTYSKVIGFLCDASK--VEKAFSLFEEMKRNGIVPSVYTYTIL 501
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+D++ + G + D++ + Y+ I + K Q+ + + + M+ G
Sbjct: 502 IDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGC 561
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK-----------EGIRAVSFTY 229
+ T A I + + G + + Y R++ D EG +++
Sbjct: 562 KPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGA 621
Query: 230 L-----KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
L K + E L + + ++++ ++ + K++ Q F +MSE G
Sbjct: 622 LVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERG 681
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLS-LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNL 343
+ P+L T++ + + DL L L M S P++V Y +VD ++G+
Sbjct: 682 YSPNLYTYSSFIDCLFKDNRL-DLVLKVLSKMLENSCTPNVVIYTEMVDGLC--KIGKTD 738
Query: 344 DFGLSKMNLDD---SPVVSTDPYVFEAFGK-GDFHSSSEAF 380
+ + +++ +P V T + + FGK G E F
Sbjct: 739 EAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELF 779
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/282 (18%), Positives = 117/282 (41%), Gaps = 14/282 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ +G +PD T C+L+ G V A ++ E + + V + L+
Sbjct: 310 ATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVK 369
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G + ++++++ + Y+ I+ K G + + + + +G+
Sbjct: 370 GLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLP 429
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKF 235
D T N I Y + ++++A ++R + + GI + TY K K
Sbjct: 430 DVFTFNTLIDGYCK---RLKLDSALQLVER----MWEYGIAPDTITYNSVLNGLCKAGKV 482
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
+ E +++ L + +N+L+ ++ + KM+ + ++MS+ G HPD +FN
Sbjct: 483 NEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL 542
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
F R +L + ++ + T+ ++ A+ K
Sbjct: 543 IYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGK 584
>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 116/275 (42%), Gaps = 30/275 (10%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G PD TL L+ G V +A ++LL+ F L+ + L++ +IG
Sbjct: 124 GYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGA 183
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I ++ ++ R E+YS I K + EM +G S D T + I
Sbjct: 184 IKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI-- 241
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS---FTY------------LKERKFFML 238
+G E G+LK + L+++ ++ ++ +TY +KE K +L
Sbjct: 242 ---YGFCIE-----GKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAK-SVL 292
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
L+ + D+ + ++ L+ Y +++K Q F MS G PD+ T+ I
Sbjct: 293 AVMLK--ACVKPDV--ITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING 348
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
F + M + + M +++ P +VTY ++D
Sbjct: 349 FCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDG 383
>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
Length = 319
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 123/288 (42%), Gaps = 44/288 (15%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
LV+ L +K K A +V T+ +G+ P+ T +LM Y V EA+ V+ +++
Sbjct: 16 LVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKVFNAMITRG 75
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLEL 167
+ V + L++ + +E I D++S R L+P Y+ + F KQ +++L
Sbjct: 76 CIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRG--LIPNTATYNTLLGGFWKQ-KIQL 132
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
K+M ++G S D T + F+ H + K+G +
Sbjct: 133 ----FKDMHAQGCSPDLVTYSIFL-----------------------HGLSKQGYLDQAL 165
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
+E M +L DL +++N+L+ + + K++ + F+++ G P
Sbjct: 166 ELFRE----MQNNYLN------PDL--VIYNILIDAMCKSGKLEDARELFLKLHVKGLLP 213
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
D+ ++ R + + + + M+ + PD +Y +V +L
Sbjct: 214 DVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVRGFL 261
>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/282 (17%), Positives = 111/282 (39%), Gaps = 9/282 (3%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ + + PD T AL+ G + EA+ + +E+L + ++
Sbjct: 350 AQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIY 409
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ + F++ + D ++ + D++ ++ I + + +++ L+E+ RG
Sbjct: 410 GFCKHNRFDDAKHMFDLMA--SPDVV--TFNTIIDVYCRAKRVDEGMQLLREISRRGLVA 465
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
++ T N I + +L + + + D + + + + K E
Sbjct: 466 NTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELF 525
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ + + DL + +N+++ K+ F + G PD+ T+N+ F
Sbjct: 526 EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGK 585
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTY-----GCVVDAYLDKRL 339
S D ++ MK PD TY GC+ +DK +
Sbjct: 586 SAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSI 627
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 55/292 (18%), Positives = 114/292 (39%), Gaps = 20/292 (6%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++V + + A L++ ++ + PD A++ +G +AQ ++ E+L
Sbjct: 265 GTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE 324
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR--NADLLPEVYSRAISCFGKQGQL 165
+V + ++D + G +++ ++ + R N D+L ++ IS K+G+L
Sbjct: 325 KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVL--TFNALISASVKEGKL 382
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID-KEGIRA 224
E EM+ R D+ T N+ I + + + R ++H+ D
Sbjct: 383 FEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK----------HNRFDDAKHMFDLMASPDV 432
Query: 225 VSF-----TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
V+F Y + ++ + LR++ +N L+ + + + Q F
Sbjct: 433 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQE 492
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M G PD T NI F + E ++ + D V Y ++
Sbjct: 493 MISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIII 544
>gi|147820978|emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
Length = 525
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/338 (20%), Positives = 132/338 (39%), Gaps = 77/338 (22%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA--------------- 98
LG+ +P AH+L +T+ EG P AL+ Y + + EA
Sbjct: 154 LGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPRCQP 213
Query: 99 ---------------------QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
+ ++EE+ S + + ++ YG+ G F+E+ ++
Sbjct: 214 DVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEMEKVL 273
Query: 138 DQVSCRNADLLPEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY- 194
+ + P+V++ +S FG +GQ+E+ME ++ + G ++ T N I Y
Sbjct: 274 SGM-LESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGAYG 332
Query: 195 ------------------------SRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSF 227
S + ++ E + G K + D+ EG++A +
Sbjct: 333 KKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKADTK 392
Query: 228 TYLK-ERKFFMLGEFLRDVG----LGRKDL--GNLLWNLLLLSYAGNFKMKSLQREFMRM 280
T+ R + G F + V G+ ++ +N ++ + A + ++R F RM
Sbjct: 393 TFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLIEMERVFNRM 452
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSM---FWDLHLSLEHM 315
+ PD TT++I A+ + M +DL + M
Sbjct: 453 KDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRM 490
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 147/342 (42%), Gaps = 20/342 (5%)
Query: 9 HGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDC-ASLVEDLGRKKKPHLAHQLV 67
G F S +T KN + +K+ R + + + A + DL KK+ A ++
Sbjct: 74 QGEFPGTSAEGRSRKTPIKN--IKKKLDRKNDAKAWANTVAEALSDLVLKKQWLQALEVF 131
Query: 68 NTVKSEGLL-PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126
++ + P T L++ +G L A +++ ++ + ++ + L+ +Y R
Sbjct: 132 EMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCR 191
Query: 127 IGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
+E SI++Q+ P+V YS + + EL+E+ +EM R + ++
Sbjct: 192 SNLIDEAFSILNQMKTL-PRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNT 250
Query: 185 ATGNAFIIYYSRFGSLTEMETAY-GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG---E 240
T N + Y + G EME G L+ + D + + + + + ++ E
Sbjct: 251 VTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYE 310
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNF---KMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
R+ G+ + +N+L+ +Y KM S+ E+MR + F +T+N
Sbjct: 311 KFRNFGI---EPETRTFNILIGAYGKKRMYDKMSSVM-EYMR--KLQFPWTTSTYNNVIE 364
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
AFS + ++ + + M+ E + D T+ C++ Y + L
Sbjct: 365 AFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGL 406
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 105/273 (38%), Gaps = 38/273 (13%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + + + + G+ PD+ T +++ Y NG VLEA E++ FV+ L+ ++
Sbjct: 815 AGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIIT 874
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
A+ N + +V+ L P + YS IS K+G ++ L+EMV G+
Sbjct: 875 AFCEKSLVNRAVWFFHKVT--KMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGW 932
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ T + I H + K+G ER F +
Sbjct: 933 KPNVYTHTSLI-----------------------HGLCKKG--------WTERAFRL--- 958
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
FL+ + + ++ Y K+ + F RM E G P+ T+
Sbjct: 959 FLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHC 1018
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ F + +E M +E P+ TY +VD
Sbjct: 1019 KAGNFSKAYELMELMSNEGFFPNTCTYNSIVDG 1051
>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
[Vitis vinifera]
gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
Length = 878
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 106/266 (39%), Gaps = 20/266 (7%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ P+ TL L+ ++G +A+ V++++ + L+ Y R G
Sbjct: 146 GVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRA 205
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ ++D + +Y+ IS F ++G+ E E ++ M G D T N+ I
Sbjct: 206 LELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISA 265
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL------ 247
G + E R+ R + ++ G+ + T ML F ++ L
Sbjct: 266 LCSAGKILEAS----RIFRDMQIDEELGLPRPNITTFN----LMLEGFCKEGMLEEAKTL 317
Query: 248 --GRKDLGNLL----WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
K GNL+ +N+ LL N K+ Q M + G P++ +FN +
Sbjct: 318 VESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCK 377
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTY 327
+ D + + M +GPD VTY
Sbjct: 378 NGLISDARMIMGLMISSGIGPDTVTY 403
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 86/187 (45%), Gaps = 15/187 (8%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-LS 107
+L+ R+ + A +LV ++ +GL PD T + + + G +LEA ++ ++ +
Sbjct: 226 TLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQID 285
Query: 108 SSFVL---SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQ 162
L ++ + +++ + + G E ++++ + RN +L+ E+ S I G +
Sbjct: 286 EELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMK-RNGNLM-ELESYNIWLLGLVRN 343
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G+L + LKEMV +G + + N + + G +++ G L+ GI
Sbjct: 344 GKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMG-------LMISSGI 396
Query: 223 RAVSFTY 229
+ TY
Sbjct: 397 GPDTVTY 403
>gi|168024876|ref|XP_001764961.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683770|gb|EDQ70177.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 118/312 (37%), Gaps = 46/312 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + ++ G+ P + C ++ Y NG V EA+ ++ L SS L + + +++
Sbjct: 380 AKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNVMIN 439
Query: 123 AYGRIGCFNEIISIIDQVS-----------------CRNADL---LPEVYSR-------- 154
Y R I + + C+ +L E+Y R
Sbjct: 440 VYMRCDMPEGAIKVYKLMEEDHLLPDAYTYHSMLRMCQKCNLPAQAEEIYWRLRNSDVEL 499
Query: 155 -------AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
++ K LE M +EM+ G+ + T N I Y + G E A+
Sbjct: 500 DEVMCNCVLNTCAKFLPLEEMHKLFQEMIDVGYVPYNITFNVMIDLYGKAGMP---ERAH 556
Query: 208 GRLKRSRHL--IDKEGIRAVSFTYLKERKFFMLGEFL---RDVGLGRKDLGNLLWNLLLL 262
LK ++ DK + Y K++ F + L ++ G G +N +L
Sbjct: 557 KALKLAQQFGSADKISFSTLVHAYAKKQDFPNMEAALWEMQNAGYGSSLEA---YNSILD 613
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
+Y +M+ + RM +G DL ++NI + + M ++ M+ E V P
Sbjct: 614 AYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMIAEMETLFRTMQEEGVVP 673
Query: 323 DLVTYGCVVDAY 334
D TY ++ Y
Sbjct: 674 DRWTYNTIIRTY 685
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 115/281 (40%), Gaps = 27/281 (9%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+LP T ++L Y + V EA+ V+ +L+S V +V S ++ Y R G F +
Sbjct: 77 GVLPSILTYSMMLLLYQRHRKVAEAESVFSHMLNSG-VQAVVAYSVMIALYNREGLFEKS 135
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I+ ++ N + + + ++ +G+QG++E E + + G S+ N+ I
Sbjct: 136 EQIVTEMRRNNVTPDRDNWLKQLNTYGQQGKIEEAERIMDTVEESGMSLGLVGYNSMITA 195
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL- 252
Y + Y + R + +E + S TY M+G R VG ++ L
Sbjct: 196 YGK-------ACLYDKAARLVEKMREEDLVPDSITY-----SCMIGACGR-VGKLKEALS 242
Query: 253 ------------GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
+ +N L+ Y ++ + R M + G PD T + A+
Sbjct: 243 WFAEMKRLEIKPASSNFNTLISLYGKAKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYD 302
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
R + D+ L ++ + +YG ++ YL L +
Sbjct: 303 RAGLIKDVTEILNLLRDAGWVEETGSYGTLLHVYLKCNLPK 343
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 11/227 (4%)
Query: 64 HQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQV-LSDLMD 122
H+L + G +P N T ++ Y G A + L+ F + ++ S L+
Sbjct: 521 HKLFQEMIDVGYVPYNITFNVMIDLYGKAGMPERAHKALK--LAQQFGSADKISFSTLVH 578
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
AY + F + + + ++ E Y+ + +GK GQ+E + + L M + G +
Sbjct: 579 AYAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRM 638
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG----IRAVSFTYLKERKFFML 238
D A+ N I Y + + EMET + ++ + D+ IR F +R +
Sbjct: 639 DLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAVYWF 698
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
+ ++D G+ + + +L+ ++ + R +RMS+AG+
Sbjct: 699 -KAMQDAGISPD---RVTYMILVSTFERAGNIDEAARWCLRMSQAGY 741
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 108/277 (38%), Gaps = 10/277 (3%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
+ Q+V ++ + PD + Y G + EA+ + + + S L + + ++
Sbjct: 135 SEQIVTEMRRNNVTPDRDNWLKQLNTYGQQGKIEEAERIMDTVEESGMSLGLVGYNSMIT 194
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
AYG+ +++ +++++ R DL+P+ YS I G+ G+L+ + EM
Sbjct: 195 AYGKACLYDKAARLVEKM--REEDLVPDSITYSCMIGACGRVGKLKEALSWFAEMKRLEI 252
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE---RKFFM 237
S+ N I Y + + + +K+ D + + A Y + +
Sbjct: 253 KPASSNFNTLISLYGKAKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYDRAGLIKDVTE 312
Query: 238 LGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
+ LRD G ++ G+ + LL Y K R F+ M +AG P
Sbjct: 313 ILNLLRDAGW-VEETGS--YGTLLHVYLKCNLPKEALRIFLAMRKAGMAPKEYMCRSLIC 369
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F MF + M+ V P L + ++ Y
Sbjct: 370 TFRDAEMFDGAKSVFKEMQVAGVTPSLESSCTMIYVY 406
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/361 (20%), Positives = 140/361 (38%), Gaps = 29/361 (8%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
I RY SL+ R LA + + + +G P++ T L+ + G
Sbjct: 228 IFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGR 287
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154
+ EA + EE++ +V + + + GC +E + ++ ++ R + ++
Sbjct: 288 LEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTA 347
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
IS + G+ E+ +M++ G + T NA I G ETA+ K
Sbjct: 348 LISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEG---RFETAFTIFK--- 401
Query: 215 HLIDKEGIRAVSFTYLKERK-FFMLGEFLRDVGLGRKDLGN------LLWNLLLLSYAGN 267
+ G + TY + K F ++G+ + + + K L + +N L+ Y
Sbjct: 402 -WMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQ 460
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR-------MSMFWDLHLSLEHMKHESV 320
+ + R M G PD T+ FSR S+F+ + +EH +
Sbjct: 461 GNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGM---MEH----GI 513
Query: 321 GPDLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEA 379
P+ VTY ++D Y + ++ L + + P T + F K + S +E
Sbjct: 514 SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAEN 573
Query: 380 F 380
F
Sbjct: 574 F 574
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 118/293 (40%), Gaps = 19/293 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ +K G +P+ T AL+ + +G A ++ ++L+ V + + L++
Sbjct: 326 AVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALIN 385
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G F +I + + + Y+ I CF G ++ +M+ G S
Sbjct: 386 QLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSP 445
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG--- 239
+ T N I Y + G+L R ++ G++ ++TY + F G
Sbjct: 446 NVITYNTLIYGYCKQGNLNNA-------MRLLEIMKGNGLKPDAWTYTELISGFSRGGKL 498
Query: 240 EFLRDVGLGRKDLG----NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
E + G + G ++ + ++ Y K+ F +M E+G P T+N+
Sbjct: 499 EHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVM 558
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348
FS+ + + M + + P+++TY +D L RN GL+
Sbjct: 559 ISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDG-----LCRNGRTGLA 606
>gi|326511196|dbj|BAJ87612.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 725
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 111/296 (37%), Gaps = 41/296 (13%)
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
+L+ + + G EA + E+ + + + +M+ Y + E + ++
Sbjct: 347 ASLIKIFCDEGMKKEALIFQSEMGKRGIPSNTSIYNTIMNVYCKCSQIEEAEGLFAEMKE 406
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ Y+ + + ++ Q E++E+ L EM GF ++ + N I Y R ++E
Sbjct: 407 KGLKPTKVTYNILMDAYSRRLQPEVVESLLLEMHDLGFQPNARSYNCLISAYGRQKKMSE 466
Query: 203 -METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
E A+ R+K K GI+A S +Y L+
Sbjct: 467 KAEDAFLRMK-------KGGIKATSSSYTS----------------------------LI 491
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
+YA + + + ++ M G P L T+ F R L + + M E VG
Sbjct: 492 CAYAVSGQYEKAHIAYLDMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMTDEKVG 551
Query: 322 PDLVTYGCVVDAYLDKRL---GRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFH 374
VT+ V+D L R++ K+ L P T + A+ KG H
Sbjct: 552 CTRVTFHMVLDGLAKHGLFVQARDVICEFGKIGL--PPTAMTYNILMNAYAKGGQH 605
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 107/268 (39%), Gaps = 16/268 (5%)
Query: 76 LPDNSTL-CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134
+P N+++ +M Y + EA+ ++ E+ + + LMDAY R +
Sbjct: 374 IPSNTSIYNTIMNVYCKCSQIEEAEGLFAEMKEKGLKPTKVTYNILMDAYSRRLQPEVVE 433
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQL-ELMENTLKEMVSRGFSVDSATGNAFIIY 193
S++ ++ Y+ IS +G+Q ++ E E+ M G S++ + I
Sbjct: 434 SLLLEMHDLGFQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKKGGIKATSSSYTSLICA 493
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF-------MLGEFLRDVG 246
Y+ G + AY +KR EG++ TY F L E + +
Sbjct: 494 YAVSGQYEKAHIAYLDMKR-------EGLKPSLETYTALLDIFRRAGNTEKLMETWKSMT 546
Query: 247 LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW 306
+ + ++++L A + + + G P T+NI A+++ +
Sbjct: 547 DEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHY 606
Query: 307 DLHLSLEHMKHESVGPDLVTYGCVVDAY 334
L L+ M + PD VTY ++ AY
Sbjct: 607 KLPQLLKEMSTLELKPDSVTYSTLIYAY 634
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 5/177 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
CA V G+ +K H+A+ +K EGL P T AL+ + G + W+ +
Sbjct: 492 CAYAVS--GQYEKAHIAYL---DMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMT 546
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ ++D + G F + +I + Y+ ++ + K GQ
Sbjct: 547 DEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHY 606
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+ LKEM + DS T + I Y+R + + ++ R+ + D + R
Sbjct: 607 KLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYR 663
>gi|302821318|ref|XP_002992322.1| hypothetical protein SELMODRAFT_135087 [Selaginella moellendorffii]
gi|300139865|gb|EFJ06598.1| hypothetical protein SELMODRAFT_135087 [Selaginella moellendorffii]
Length = 429
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 110/273 (40%), Gaps = 10/273 (3%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-CFNE 132
L PD++T A + A + + V+E + + + V + ++ YG+ G C E
Sbjct: 98 ALKPDDATFVAALGACALLELLDRGRAVYERAVRHGYRSHLLVATAAVNMYGKCGRCAEE 157
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+ D + + D + ++ IS + + G L M GF + AT A +
Sbjct: 158 GRTAFDAIG-HDKDTI--CWTNMISAYAQYGHPREAMRLLWRMEQEGFKPNLATFVALVE 214
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
S+ G+L Y R+ SR +D + I ++ KF + E ++
Sbjct: 215 ACSQLGALEIGRMIYARVVASR--LDSDPILGTGILHMYA-KFGNVAEAANVFEKLSRNG 271
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+ WN +L+++A + + R + M G P TF A S + + H
Sbjct: 272 DIITWNCMLMAHAQHGSGMEVLRLYKEMVVQGLQPSDITFVAILCACSHLGAWEKGHEHF 331
Query: 313 EHMKHE-SVGPDLVTYGCVVDAYLDKRLGRNLD 344
MK + + P +GCVVD L R GR D
Sbjct: 332 RFMKWDFGIDPTAEHFGCVVD--LLGRSGRVRD 362
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 105/273 (38%), Gaps = 38/273 (13%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + + + + G+ PD+ T +++ Y NG VLEA E++ FV+ L+ ++
Sbjct: 228 AGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIIT 287
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
A+ N + +V+ L P + YS IS K+G ++ L+EMV G+
Sbjct: 288 AFCEKSLVNRAVWFFHKVT--KMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGW 345
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ T + I H + K+G ER F +
Sbjct: 346 KPNVYTHTSLI-----------------------HGLCKKG--------WTERAFRL--- 371
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
FL+ + + ++ Y K+ + F RM E G P+ T+
Sbjct: 372 FLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHC 431
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ F + +E M +E P+ TY +VD
Sbjct: 432 KAGNFSKAYELMELMSNEGFFPNTCTYNSIVDG 464
>gi|255076805|ref|XP_002502070.1| predicted protein [Micromonas sp. RCC299]
gi|226517335|gb|ACO63328.1| predicted protein [Micromonas sp. RCC299]
Length = 270
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 53/279 (18%)
Query: 97 EAQVVW---EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV-- 151
+ + VW E LL+ +V+ + L+ A G +G + ++ ++ R+A +P+
Sbjct: 1 DPEDVWRQFENLLADGHRPTVKTYTSLLSALGDVGAPEDAEEVLARM--RDAGEVPDARA 58
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ A+ + G+ E +++M+ G + D+AT + Y+ G L +
Sbjct: 59 YNAAVHAWCANGKPANAERLVEKMLGDGVAPDAATYPDIVAAYATLGDL----------R 108
Query: 212 RSRHLIDKEGI--------RAVSFTY-LKERKFFMLGEFLRDVGLGRKDLGNLLW----- 257
R ++D E + R V+ +Y + + +G G R+ LG + W
Sbjct: 109 RCESILDMERVAERKGRVSRPVTASYGMIIDHYVSVGAM----GDARRLLGQMQWDKVAP 164
Query: 258 -----NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF--W---- 306
N+LL Y + + + Q F + +G D+ + I+ S S+ W
Sbjct: 165 SIEIFNMLLKGYLKSGNVGAAQDVFRELEGSGTW-DMDSLGIKPDVTSYTSLMDHWANQG 223
Query: 307 DLHLS---LEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
D+ L+ L M+ + V PD T+G +V AY GRN
Sbjct: 224 DVDLAEKILAKMELKGVAPDERTFGSLVKAYA---RGRN 259
>gi|223946379|gb|ACN27273.1| unknown [Zea mays]
gi|413924536|gb|AFW64468.1| pentatricopeptide repeat 5 [Zea mays]
Length = 386
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 96/233 (41%), Gaps = 31/233 (13%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+YS+ IS G++GQ+ + +M + G D++ N+ I
Sbjct: 13 IYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLI------------------- 53
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
HL ++ +A++ LG F + + R + +N+LL ++A
Sbjct: 54 --GAHLHSRDKTKALAKA---------LGYFEKMKCIERCQPTIVTYNILLRAFAQAGDT 102
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
K + F + E+ PD+ T+N A+ + M ++ L MK PD++T+ +
Sbjct: 103 KQVDMLFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNIL 162
Query: 331 VDAYLDKRLGRNLDFGL-SKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+D+Y K+ ++ S + + P T + +G+ +E+ +E
Sbjct: 163 IDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVE 215
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 71/158 (44%)
Query: 23 QTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
QT K + + ++R +++ S++ + GR + A +V ++ G P+ T
Sbjct: 170 QTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQ 229
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
L++ YA+ V +A+ V++EL++S + + L+ +++AY G E ++D
Sbjct: 230 ECLIIMYAHCDCVSKARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQ 289
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ Y + K L++ LK M +G
Sbjct: 290 QCVVPNGSTYKLLYKAYTKANDKLLVQKLLKRMNKQGI 327
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 139/342 (40%), Gaps = 28/342 (8%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN----GFVLEAQVVWE 103
+ L+ +GRK + +A L + +++ G PD S +L+ + ++ + +A +E
Sbjct: 15 SKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKTKALAKALGYFE 74
Query: 104 ELLSSSFVLSVQVLSD-LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR--AISCFG 160
++ V + L+ A+ + G ++ + + + + P+VY+ + +G
Sbjct: 75 KMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLD--ESVVSPDVYTYNGVLDAYG 132
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K G ++ ME+ L M S D T N I Y R + +ME + L RS+
Sbjct: 133 KNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHP 192
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG----NLLWNLLLLSYAGNFKMKSLQRE 276
++ Y + R L E V ++LG + L++ YA + ++
Sbjct: 193 TFNSMITNYGRAR----LREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQV 248
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL- 335
F + + L++ N A+ + + L+ + V P+ TY + AY
Sbjct: 249 FDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLYKAYTK 308
Query: 336 --DKRLGRNLDFGLSKMNLDDSPVVSTDPY---VFEAFGKGD 372
DK L + L L +MN +V + EAFG D
Sbjct: 309 ANDKLLVQKL---LKRMN--KQGIVPNKKFFLDALEAFGTSD 345
>gi|357127701|ref|XP_003565517.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Brachypodium distachyon]
Length = 579
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/344 (20%), Positives = 135/344 (39%), Gaps = 19/344 (5%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQ-VVWEELLSS 108
LV+ +++ A +V ++ + PD T L YA N A+ +V E+ +
Sbjct: 173 LVKAWCDQRRMEQAWAVVGRMRPAAVEPDVVTYNTLASAYAKNDETWRAEELVVVEMARA 232
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
S + ++ Y R G E + + Q+ ++A + P V ++ + F
Sbjct: 233 RLRTSERTWGIIVGGYCREGRLEEALRCVRQM--KDAGVGPNVIVFNTLLKGFLDANDAA 290
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ L M G D T + + S G + + R+ + D + ++
Sbjct: 291 AAADVLGLMEQFGIKPDIVTYSHQLNALSSLGHMARCAKVFDRMLEAGIEPDPQVYSILA 350
Query: 227 FTYLKERKFFMLGEFLRDVG-LG-RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
Y++ ++ E L+ +G LG R ++ + + ++ + M + R + +M AG
Sbjct: 351 KGYVRAQQPGKAEELLQQMGRLGVRPNV--VTFTTVISGWCSVADMDNATRVYDKMRGAG 408
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY--------LD 336
P+L TF +S W L+ MK V P TY V DA+ +
Sbjct: 409 VRPNLRTFETLIWGYSEQKQPWKAEKVLQMMKDAGVRPKQSTYSLVADAWKAVGIVENAN 468
Query: 337 KRLGRNLDFGLSKMNLDDSPVVSTDPYV--FEAFGKGDFHSSSE 378
+ LG D ++ D P +D + + FG+ D + S+
Sbjct: 469 RALGSPDDCRRRNVSDHDEPGRHSDDEIDRLQRFGRTDEQAKSD 512
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 23/326 (7%)
Query: 57 KKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQV 116
+KKPH AH + + EG P T L+ + + ++ ++
Sbjct: 39 EKKPHQAHAVFAQLAGEGHRPSLVTYTTLLSLLTSQRAFERIPALLADIEAAGLRPDPIF 98
Query: 117 LSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKE 174
+ L++A+ G E S+ ++S + P V ++ I FG G+ E + +
Sbjct: 99 FNALINAFVEAGRMGEATSVFWKMSRHHPGCRPTVSTFNTLIKGFGIAGRPEESQRIF-D 157
Query: 175 MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234
+++ + T N + + + + GR++ + D ++ Y K +
Sbjct: 158 LMTAWVRPNLTTYNILVKAWCDQRRMEQAWAVVGRMRPAAVEPDVVTYNTLASAYAKNDE 217
Query: 235 FFMLGEF-LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+ E + ++ R W +++ Y +++ R +M +AG P++ FN
Sbjct: 218 TWRAEELVVVEMARARLRTSERTWGIIVGGYCREGRLEEALRCVRQMKDAGVGPNVIVFN 277
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY--------LDKRLGRNLDF 345
F + L M+ + PD+VTY ++A K R L+
Sbjct: 278 TLLKGFLDANDAAAAADVLGLMEQFGIKPDIVTYSHQLNALSSLGHMARCAKVFDRMLEA 337
Query: 346 GLSKMNLDDSPVVSTDPYVFEAFGKG 371
G + DP V+ KG
Sbjct: 338 G-----------IEPDPQVYSILAKG 352
>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
Length = 1005
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/296 (19%), Positives = 102/296 (34%), Gaps = 37/296 (12%)
Query: 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102
G V + +V L K A ++ +GL D + G + A ++
Sbjct: 677 GVVSISKVVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIY 736
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR--NADLLPEVYSRAISCFG 160
+ ++S S+Q + ++ YGR ++ + + ++ C L + Y+ IS +G
Sbjct: 737 DRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYG 796
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K G+ +EM G + N I Y+ G E + + + R +
Sbjct: 797 KAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAMLR-------D 849
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
G S TYL L+ +Y +FK + M M
Sbjct: 850 GCSPDSLTYLA----------------------------LIRAYTQSFKFLEAEETIMSM 881
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
G P FN AF++ + + + PD+ Y ++ YLD
Sbjct: 882 QNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLD 937
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 116/290 (40%), Gaps = 6/290 (2%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
ASL+ G++ K A ++ + + EG +++ YA G EA ++EE+
Sbjct: 614 ASLITLYGKQHKLKKAIEVFSAI--EGCTSGKLIYISMIDAYAKCGKAEEAYHLYEEVTG 671
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
L V +S ++ A G E ++I + +L Y+ I+ G+L
Sbjct: 672 KGIELGVVSISKVVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHF 731
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR---HLIDKEGIRA 224
+ MVS G + T N I Y R L + + + + S L +K
Sbjct: 732 ANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNL 791
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+S+ Y K K R++ G + +N+++ YA Q F M G
Sbjct: 792 ISY-YGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDG 850
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD T+ A+++ F + ++ M++E V P V + ++ A+
Sbjct: 851 CSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAF 900
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + + ++++EG+LP L+ +A GF EA+ V+ LLS+ V ++
Sbjct: 874 AEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLR 933
Query: 123 AYGRIGCFNEIISIIDQV 140
Y GC + I+ +Q+
Sbjct: 934 GYLDYGCVEKGITFFEQI 951
>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
Length = 454
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/317 (20%), Positives = 134/317 (42%), Gaps = 36/317 (11%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
RK+ + V SL++ L + K A ++ +++ GL PD +T L+ YA+
Sbjct: 101 RKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASK 160
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV- 151
G ++E + ++ + L V + L+ AY + +E++ + ++ R L P
Sbjct: 161 GALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKM--RQQGLTPNAV 218
Query: 152 -YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y I K G+L+ ++M+ +G + + ++Y S +L Y +
Sbjct: 219 NYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPN------VVVYTSLIHALC----TYDKW 268
Query: 211 KRSRHLIDK---EGIRA--VSFT-----------YLKERKFFMLGEFLRDVGLGRKDLGN 254
+++ LI + +GI V F ++ +K F + L +G+ D+
Sbjct: 269 EKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLF---DLLGHIGV-NPDV-- 322
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ ++ L+ Y KM + M G PD T++ + +++ D +
Sbjct: 323 ITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKE 382
Query: 315 MKHESVGPDLVTYGCVV 331
M+ V PD++TY ++
Sbjct: 383 MESNGVNPDIITYNIIL 399
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 113/289 (39%), Gaps = 35/289 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ KKK A ++ + GL PDN T L+ N V EA W++ +
Sbjct: 545 TLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRN 604
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ V S ++D + E D++ +N VY+ I + + G+L +
Sbjct: 605 GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMA 664
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
++M +G S +SAT + I S + E + + ++ EG+ F
Sbjct: 665 LELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRM-------EGLEPNVFH 717
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y L D G G+ LG ++ K++ L RE M HP+
Sbjct: 718 YTA----------LID-GYGK--LGQMV------------KVECLLRE---MHSKNVHPN 749
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
T+ + ++R + L M+ + + PD +TY + YL +
Sbjct: 750 KITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQ 798
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 73/153 (47%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ R + +A +L +K +G+ P+++T +L+ + V EA++++EE+
Sbjct: 651 LIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEG 710
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+V + L+D YG++G ++ ++ ++ +N Y+ I + + G +
Sbjct: 711 LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 770
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
L EM +G DS T FI Y + G + E
Sbjct: 771 RLLNEMREKGIVPDSITYKEFIYGYLKQGGVLE 803
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A V +E+ F +V V ++L+D++ G N+ I I D + + L Y+ I
Sbjct: 348 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 407
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ K GQ + E LKEM+S GF+V+ + + I
Sbjct: 408 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 442
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 109/272 (40%), Gaps = 24/272 (8%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P+ +T ++++ G++ + + S+F + ++V + LMD Y + GC +
Sbjct: 130 PNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQV 189
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
D+++ ++ + S + C + LEL ++M S G D + + +R
Sbjct: 190 FDELAEKDIVSWTSIISGLVQCNCPKEALEL----FQDMQSSGIEPDGIILTSVLSACAR 245
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIR-------AVSFTYLKERKFFMLGEFLRDVGLGR 249
G+L YGR ID++ I+ A+ Y K M + G+
Sbjct: 246 LGALD-----YGRWVHEH--IDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFN--GMPH 296
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
K++ L WN LL A + + F M G P+ TF A + +
Sbjct: 297 KNV--LTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGR 354
Query: 310 LSLEHMKHE--SVGPDLVTYGCVVDAYLDKRL 339
MK + ++ P L YGC+VD RL
Sbjct: 355 QYFNWMKGQQYNLPPRLEHYGCMVDLLCRARL 386
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 78/374 (20%), Positives = 153/374 (40%), Gaps = 43/374 (11%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
++++R G D + +V+ LG+ K + A + +K P ++T +++L
Sbjct: 148 QEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQE 207
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVL-SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151
G + ++ E+ + L V S L+ A+G++G + IS+ D++ ++
Sbjct: 208 GHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKI 267
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ + + K G++E ++EM +G ++ T I G ++E AY
Sbjct: 268 YTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELI---KGVGKAGKVEEAY---- 320
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL-LLSYAGNFKM 270
++ LKE G K L+ NL+ LL AG ++
Sbjct: 321 ------------SIFMNMLKE---------------GCKPDVVLINNLINLLGKAG--RL 351
Query: 271 KSLQREFMRMSEAGFHPDLTTFN--IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+ F M P++ T+N I+A+ F + + L E MK V P TY
Sbjct: 352 ADAIKLFEEMESLQCTPNVVTYNTVIKAL-FESKARASEAFLWYEKMKENGVVPSSFTYS 410
Query: 329 CVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGD-FHSSSEAFLEFKRQ 386
++D + L +M+ +P + + A GK + +++E F E +
Sbjct: 411 ILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELREN 470
Query: 387 RKWTYRKLIAVYLK 400
++ ++ AV +K
Sbjct: 471 CGYSSARVYAVMIK 484
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 7/163 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A +++ LG+ + A L N +K G PD ALM G EA + +
Sbjct: 480 AVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEE 539
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
+ + + +++ + R G I + ++ +N+ + P+V Y+ + C + G
Sbjct: 540 NGCTPDLNSHNIILNGFARTGGPKGAIEMFTRM--KNSKIKPDVVSYNTVLGCLSRAGMF 597
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
E +KEM S+GF D T ++ + G + E T G
Sbjct: 598 EEAAKLMKEMNSKGFEYDLITYSSIL---EAVGKIDEDHTPAG 637
>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
Length = 1084
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 12/222 (5%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ PD + ++ C A+ G + E +V+ L + V + L+ Y R GC +
Sbjct: 193 GVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDA 252
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ + D + R+A ++ IS + G + + +M S G + S T + +
Sbjct: 253 MQVFDSMHARDAI----SWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPA 308
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK--- 250
+ G + +G +S L D E +++ L + FM + D+G R+
Sbjct: 309 CAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVK-CGDMGSARRVFD 367
Query: 251 ---DLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
GN+ +WNL++ YA + + F +M E G PD
Sbjct: 368 AMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPD 409
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 110/294 (37%), Gaps = 59/294 (20%)
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+L Y G + A++V++E+ V V+V + LM AY + G F E +S+ Q+ C
Sbjct: 136 LVLAYLKCGDLGGARMVFDEM--PPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCG 193
Query: 145 ADLLPEVYSRAISCFGKQGQL---ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
S + C G + E++ L+++ G A NA I YSR G +
Sbjct: 194 VSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKL---GLGEACAVANALIALYSRCGCME 250
Query: 202 EMETAY---------------------GRLKRSRHLIDK---EGIRAVSFTYLK------ 231
+ + G R+ L K EG S T L
Sbjct: 251 DAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACA 310
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNL--------------LLLSYAGNFKMKSLQREF 277
E F ++G+ + G LLW+L L+ Y M S +R F
Sbjct: 311 ELGFELVGKVVH----GYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVF 366
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M G ++ +N+ +++ + F + L E M + PD C++
Sbjct: 367 DAMPSKG---NVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLL 417
>gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
[Vitis vinifera]
Length = 1071
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/296 (19%), Positives = 102/296 (34%), Gaps = 37/296 (12%)
Query: 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102
G V + +V L K A ++ +GL D + G + A ++
Sbjct: 743 GVVSISKVVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIY 802
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR--NADLLPEVYSRAISCFG 160
+ ++S S+Q + ++ YGR ++ + + ++ C L + Y+ IS +G
Sbjct: 803 DRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYG 862
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K G+ +EM G + N I Y+ G E + + + R +
Sbjct: 863 KAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAMLR-------D 915
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
G S TYL L+ +Y +FK + M M
Sbjct: 916 GCSPDSLTYLA----------------------------LIRAYTQSFKFLEAEETIMSM 947
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
G P FN AF++ + + + PD+ Y ++ YLD
Sbjct: 948 QNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLD 1003
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 116/290 (40%), Gaps = 6/290 (2%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
ASL+ G++ K A ++ + + EG +++ YA G EA ++EE+
Sbjct: 680 ASLITLYGKQHKLKKAIEVFSAI--EGCTSGKLIYISMIDAYAKCGKAEEAYHLYEEVTG 737
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
L V +S ++ A G E ++I + +L Y+ I+ G+L
Sbjct: 738 KGIELGVVSISKVVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHF 797
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR---HLIDKEGIRA 224
+ MVS G + T N I Y R L + + + + S L +K
Sbjct: 798 ANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNL 857
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+S+ Y K K R++ G + +N+++ YA Q F M G
Sbjct: 858 ISY-YGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDG 916
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
PD T+ A+++ F + ++ M++E V P V + ++ A+
Sbjct: 917 CSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAF 966
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + + ++++EG+LP L+ +A GF EA+ V+ LLS+ V ++
Sbjct: 940 AEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLR 999
Query: 123 AYGRIGCFNEIISIIDQV 140
Y GC + I+ +Q+
Sbjct: 1000 GYLDYGCVEKGITFFEQI 1017
>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 613
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/275 (18%), Positives = 109/275 (39%), Gaps = 35/275 (12%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
++++ ++ + ++ + +T L+ Y ++G + EA+ V+E++L + V + ++
Sbjct: 269 VNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIIS 328
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
++G ++ D+++ R Y I GQL+ E + EM S+G +
Sbjct: 329 WQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDM 388
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
+ N I Y + G + E R + +++K+G FTY
Sbjct: 389 NLVIFNTLINGYCKKGMIDEA-------LRMQDVMEKKGFENDIFTY------------- 428
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ L L+ + + +R M E G P+ +F I +
Sbjct: 429 ----------NTIAGGLCKLN-----RHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKE 473
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
+ + MK + P++VTY ++D Y K
Sbjct: 474 GNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKK 508
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 108/262 (41%), Gaps = 40/262 (15%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF---NEIISII--DQVSCRNADL 147
G V A+ + E+ +V + L++AY +I F NE++ ++ D+V A
Sbjct: 229 GRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAA-- 286
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I +G G++ E ++M+ RG D F S+ +
Sbjct: 287 ---TYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHV----------FTSIISWQCKL 333
Query: 208 GRLKRSRHLIDK---EGIRAVSFTY------------LKERKFFMLGEFLRDVGLGRKDL 252
G +KR+ L D+ G+ A + TY L + ML ++ GL D+
Sbjct: 334 GNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAE--MLVNEMQSQGL---DM 388
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+++N L+ Y + R M + GF D+ T+N A +++ + L
Sbjct: 389 NLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWL 448
Query: 313 EHMKHESVGPDLVTYGCVVDAY 334
M + V P+ V++ ++D +
Sbjct: 449 FTMVEKGVDPNAVSFTIMIDIH 470
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 4/186 (2%)
Query: 25 HPKNGDLARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
H D ARKI+ + + G + + L+ ++ + A ++ + +KS GL PD
Sbjct: 283 HGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTV 342
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
L+ C+ G + EA + +E+ + L+ R G F+E + +++ +
Sbjct: 343 GYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENL 402
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+ L Y ++ ++G+LE L M+SRGF AT N ++ G +
Sbjct: 403 AYEGVYLNKGSYRIVLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMV 462
Query: 201 TEMETA 206
TA
Sbjct: 463 DNAVTA 468
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 75/361 (20%), Positives = 140/361 (38%), Gaps = 29/361 (8%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
I RY SL+ R LA + + + +G P++ T L+ + G
Sbjct: 228 IFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGR 287
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154
+ EA + EE++ +V + + + GC +E + ++ ++ R + ++
Sbjct: 288 LEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTA 347
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
IS + G+ E+ +M++ G + T NA I G ETA+ K
Sbjct: 348 LISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEG---RFETAFTIFK--- 401
Query: 215 HLIDKEGIRAVSFTYLKERK-FFMLGEFLRDVGLGRKDLGN------LLWNLLLLSYAGN 267
+ G + TY + K F ++G+ + + + K L + +N L+ Y
Sbjct: 402 -WMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQ 460
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR-------MSMFWDLHLSLEHMKHESV 320
+ + R M G PD T+ FSR S+F+ + +EH +
Sbjct: 461 GNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGM---MEH----GI 513
Query: 321 GPDLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEA 379
P+ VTY ++D Y + ++ L + + P T + F K + S +E
Sbjct: 514 SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAEN 573
Query: 380 F 380
F
Sbjct: 574 F 574
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 118/293 (40%), Gaps = 19/293 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ +K G +P+ T AL+ + +G A ++ ++L+ V + + L++
Sbjct: 326 AVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALIN 385
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G F +I + + + Y+ I CF G ++ +M+ G S
Sbjct: 386 QLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSP 445
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG--- 239
+ T N I Y + G+L R ++ G++ ++TY + F G
Sbjct: 446 NVITYNTLIYGYCKQGNLNNA-------MRLLEIMKGNGLKPDAWTYTELISGFSRGGKL 498
Query: 240 EFLRDVGLGRKDLG----NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
E + G + G ++ + ++ Y K+ F +M E+G P T+N+
Sbjct: 499 EHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVM 558
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348
FS+ + + M + + P+++TY +D L RN GL+
Sbjct: 559 ISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDG-----LCRNGRTGLA 606
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/267 (19%), Positives = 108/267 (40%), Gaps = 12/267 (4%)
Query: 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY---GRIGCFN 131
++P+ T AL+ + G +LEA+ ++ E+++ S L+D + R+G N
Sbjct: 310 IIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEAN 369
Query: 132 EIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
+++ ++ C P + YS I+ + K +++ E+ S+G D+ T N
Sbjct: 370 QMLDLMVSKGCE-----PNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNT 424
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG-EFLRDVGLG 248
+ + + G L + + + SR + + L + E +
Sbjct: 425 LVQGFCQSGKLNVAKELFQEMV-SRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKS 483
Query: 249 RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
R LG ++N+++ K+ F +S G PD+ T+N+ + +
Sbjct: 484 RMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEA 543
Query: 309 HLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ MK + P TY ++ A+L
Sbjct: 544 DMLFRKMKEDGCAPSDCTYNILIRAHL 570
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/307 (19%), Positives = 124/307 (40%), Gaps = 2/307 (0%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L +++ + + V +L+ L K + A L++ + G + T ++
Sbjct: 161 LVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMC 220
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
+G A ++ ++ S SV S ++D+ + G ++ +S+ +++ +
Sbjct: 221 KSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVV 280
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
YS I G+ + L+EM+ R + T +A I + + G L E + Y +
Sbjct: 281 AYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEM 340
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFK 269
D ++ + KE + + L D+ + + N++ +++L+ SY +
Sbjct: 341 VARGIAPDTITYSSLIDGFCKENRLGEANQML-DLMVSKGCEPNIVTYSILINSYCKAKR 399
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+ + R F +S G D T+N F + + M V P +VTYG
Sbjct: 400 VDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGI 459
Query: 330 VVDAYLD 336
++D D
Sbjct: 460 LLDGLCD 466
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/280 (17%), Positives = 115/280 (41%), Gaps = 2/280 (0%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RK+K A +V G P+ T L+ + G V EA + + ++ + +V
Sbjct: 116 RKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVV 175
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
++ L++ G E + +ID++ + Y ++ K G L + ++M
Sbjct: 176 TVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKM 235
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
R + I + G+L + + + ++ D ++ + ++
Sbjct: 236 EERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRW 295
Query: 236 FMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
+ LR++ +GR + N++ ++ L+ + K+ + + M G PD T++
Sbjct: 296 DDGAKMLREM-IGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSS 354
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F + + + + L+ M + P++VTY ++++Y
Sbjct: 355 LIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSY 394
>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 874
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 89/404 (22%), Positives = 157/404 (38%), Gaps = 51/404 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW------ 102
+L+ ++ K H A +LV+ ++ +GL+P T + + +G +LEA ++
Sbjct: 222 TLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQID 281
Query: 103 EEL-LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP-EVYSRAISCFG 160
EEL L V++ ++ ++ + + G E +++D + RNA+ + E Y+ +
Sbjct: 282 EELGLPHPNVITYKL---MLMGFCKEGMLEEAKTLVDTMK-RNANFINLESYNIWLLGLI 337
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
+ G+L LKEM+ G D + N + + G L++ G + R+ L D
Sbjct: 338 RNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTV 397
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
+ Y + K F L ++ N+LL S ++ + +M
Sbjct: 398 TYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKM 457
Query: 281 SEAGFHPDLTTFNIRAVAFSR----------MSMFWD-------------LHLSLEHMKH 317
+E G+ D T NI A ++ W + L + +
Sbjct: 458 NEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISG 517
Query: 318 ESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHS-- 375
+ PDLVTY ++ + GR LD K S + D +++ F HS
Sbjct: 518 KKCTPDLVTYSTIISGLC--KAGR-LDDAKKKFIEMMSKGLQPDSAIYDTF----IHSFC 570
Query: 376 ----SSEAFLEFKRQRKWTYRKLIAVYLKKQL---RRNQIFWNY 412
S AF K K K + Y L +NQIF Y
Sbjct: 571 REGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELY 614
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 127/333 (38%), Gaps = 57/333 (17%)
Query: 3 TFSLSLHG-SFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPH 61
T+S LHG K K F +L ++I C L+ L ++ +
Sbjct: 398 TYSTLLHGYCSKGKVFEA---------NNLLHEMISNNCSPNTYTCNVLLHSLWKEGRIS 448
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
A L+ + +G D T ++ NNG + +A E+++ + L +L
Sbjct: 449 EAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAI----EIVNGMWTHGSAALGNLG 504
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
+++ IG ++ IS C DL+ YS IS K G+L+ + EM+S+G
Sbjct: 505 NSF--IGLVDDTIS---GKKC-TPDLV--TYSTIISGLCKAGRLDDAKKKFIEMMSKGLQ 556
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
DSA + FI + R G ++ +A+ LK ++K G TY
Sbjct: 557 PDSAIYDTFIHSFCREGKIS---SAFQVLKD----MEKRGCNKTLQTY------------ 597
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
N L+L ++ L M E G PD+ T+N
Sbjct: 598 ----------------NSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCE 641
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D L+ M + + P++ ++ ++ A+
Sbjct: 642 GGRINDAPSVLDEMLQKGISPNISSFRILIKAF 674
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 106/267 (39%), Gaps = 8/267 (2%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P+ T L+ ++G + +A+ +++++ + + L+ Y R G ++ + +
Sbjct: 145 PEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLEL 204
Query: 137 IDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ Q+ R +LP +Y+ IS F K+G+ E + +M G T N+ I
Sbjct: 205 LGQM--RTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISAL 262
Query: 195 SRFGSLTEMETAYGRLKRSRHL-IDKEGIRAVSFTYLKERKFFMLGE--FLRDVGLGRKD 251
G + E + ++ L + + + K ML E L D +
Sbjct: 263 CGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNAN 322
Query: 252 LGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
NL +N+ LL N K+ M G PD+ ++NI + M D +
Sbjct: 323 FINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARM 382
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLDK 337
+ M + PD VTY ++ Y K
Sbjct: 383 LMGLMIRNGILPDTVTYSTLLHGYCSK 409
>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
Length = 798
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 114/279 (40%), Gaps = 43/279 (15%)
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+V Y+ I+ ++GQL+ EM+ +G S + T N + Y G E
Sbjct: 204 PDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGI 263
Query: 207 YGRLKRSRHLIDKEGIRAVSFTY-------------LKERKFFMLGEFLRDVGLGRKDLG 253
+ ++ R +G+ TY ++ RK F V G K
Sbjct: 264 FRKMCR-------DGVEPDVVTYNTLMVYLCKNGRSMEARKVFD-----SMVKKGHKP-D 310
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+ ++ LL YA + + + M G PD FNI A+++ M + L+
Sbjct: 311 SSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFS 370
Query: 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDF 373
M+ + + P++VTYG V+DA R+G+ +D +S+ + S ++ + VF G
Sbjct: 371 KMRQQGLHPNIVTYGTVMDALC--RVGK-VDDAMSQFDRLISEGLTPNGVVFRTLIHG-- 425
Query: 374 HSSSEAFLEFKRQRKWTYRKLIAV-YLKKQLRRNQIFWN 411
KW + +AV + + + N IF+N
Sbjct: 426 ---------LCACDKWDKAEELAVEMIGRGICPNTIFFN 455
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/251 (18%), Positives = 97/251 (38%), Gaps = 8/251 (3%)
Query: 64 HQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123
HQL++ + G PD+ L+ YA +G V EA + + ++ ++ +MDA
Sbjct: 331 HQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDA 390
Query: 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
R+G ++ +S D++ V+ I + + E EM+ RG +
Sbjct: 391 LCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPN 450
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
+ N + + + G +T + + + R D + Y + K + L
Sbjct: 451 TIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLE 510
Query: 244 DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT--------FNIR 295
+ L + +N ++ Y N +++ F +M+ G +P + F R
Sbjct: 511 GMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTR 570
Query: 296 AVAFSRMSMFW 306
+A ++ W
Sbjct: 571 RIAAAKELYLW 581
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 113/289 (39%), Gaps = 35/289 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ KKK A ++ + GL PDN T L+ N V EA W++ +
Sbjct: 558 TLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRN 617
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ V S ++D + E D++ +N VY+ I + + G+L +
Sbjct: 618 GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMA 677
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
++M +G S +SAT + I S + E + + ++ EG+ F
Sbjct: 678 LELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRM-------EGLEPNVFH 730
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y L D G G+ LG ++ K++ L RE M HP+
Sbjct: 731 YTA----------LID-GYGK--LGQMV------------KVECLLRE---MHSKNVHPN 762
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
T+ + ++R + L M+ + + PD +TY + YL +
Sbjct: 763 KITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQ 811
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 73/153 (47%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ R + +A +L +K +G+ P+++T +L+ + V EA++++EE+
Sbjct: 664 LIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEG 723
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+V + L+D YG++G ++ ++ ++ +N Y+ I + + G +
Sbjct: 724 LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 783
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
L EM +G DS T FI Y + G + E
Sbjct: 784 RLLNEMREKGIVPDSITYKEFIYGYLKQGGVLE 816
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A V +E+ F +V V ++L+D++ G N+ I I D + + L Y+ I
Sbjct: 361 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 420
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ K GQ + E LKEM+S GF+V+ + + I
Sbjct: 421 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 455
>gi|15219527|ref|NP_177512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169780|sp|Q9C9U0.1|PP118_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73710
gi|12324197|gb|AAG52063.1|AC012679_1 hypothetical protein; 49134-52109 [Arabidopsis thaliana]
gi|332197379|gb|AEE35500.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 991
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ G+ K A L +K++G PD T +L A V EAQ + E+L S
Sbjct: 521 MIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSG 580
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + ++ +Y R+G ++ + + + + VY I+ F + G +E
Sbjct: 581 CKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAI 640
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
+ M G + + I YS+ G L E Y ++K S
Sbjct: 641 QYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDS 684
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 111/266 (41%), Gaps = 16/266 (6%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD + +++ A+ G V EA+ ++ L V + +M Y +G +E I +
Sbjct: 688 PDVAASNSMLSLCADLGIVSEAESIFNALREKG-TCDVISFATMMYLYKGMGMLDEAIEV 746
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEM-VSRGFSVDSATGNAFIIY 193
+++ R + LL + +++ ++C+ GQL EM V R +D T
Sbjct: 747 AEEM--RESGLLSDCTSFNQVMACYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTL 804
Query: 194 YSRFG----SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
+ G ++++++TAY K + I A F+ + + + E +++ G
Sbjct: 805 LKKGGVPSEAVSQLQTAYNEAKP----LATPAITATLFSAMGLYAYAL--ESCQELTSGE 858
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ +N ++ +Y+ + + + +MRM E G PD+ T + + M +
Sbjct: 859 IPREHFAYNAVIYTYSASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVK 918
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYL 335
+ + P + V DAY+
Sbjct: 919 RVHSRLTFGELEPSQSLFKAVRDAYV 944
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L+D YG+ G N+ ++ ++ + ++ I G G L E+ LK+M +G
Sbjct: 311 LIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKG 370
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
S D+ T N + ++ G + Y ++++ D RAV
Sbjct: 371 ISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAV 416
>gi|255661204|gb|ACU25771.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 426
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/325 (20%), Positives = 124/325 (38%), Gaps = 47/325 (14%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ G+ K A L++ +K+ G+ PD + L+ Y N LEA V+ E+
Sbjct: 84 SMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLLTMYVENQKFLEALSVFAEMREI 143
Query: 109 SFVLSVQVLSDLMDAYG----------------RIGC-------------------FNEI 133
L + + ++D YG +IG F E
Sbjct: 144 KCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTLLRVYGDAELFGEA 203
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
I + + +N + Y+ + +GK + E N ++EM + G ++ T + I
Sbjct: 204 IHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNXGIEPNAITYSTIISI 263
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY----LKERKFFMLGEFLRDVGLGR 249
+ + G L + +L+ S ID+ + + Y L +L E R + R
Sbjct: 264 WGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPR 323
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
++L AG +++ F + +AG D+T F+ FS+ + ++
Sbjct: 324 DTAXHIL--------AGAGRIEEATWVFRQAIDAGEVKDITVFSRMIDLFSKYKKYANVV 375
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAY 334
+ M+ PD V++AY
Sbjct: 376 EVFDKMRGLGYFPDSNVIALVLNAY 400
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L PE YS I+ FGK+G + + L+ M D + I +
Sbjct: 1 RZRALSPERYTYSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D ++ + K + F + ++ + ++ L
Sbjct: 61 SKAISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++++Y ++ Y D L
Sbjct: 181 EPNVISYNTLLRVYGDAEL 199
>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
Length = 844
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 116/294 (39%), Gaps = 5/294 (1%)
Query: 39 RKQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
RK+ G V C LV+ L +K A +++ + + G +P+ T ++ Y + G
Sbjct: 232 RKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGD 291
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154
++ A+ V+ E+L +V + LMD Y + G F + + ++D++ + Y
Sbjct: 292 MVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGV 351
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
I + K+ + + N L +M+ + + SA I G + + +L +
Sbjct: 352 IIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKN 411
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
D + KE K + + + G L +N L+ ++
Sbjct: 412 CTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIP-STLTYNALIAGMCEGGELPEAA 470
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
R + M E G P+ T+N+ F ++ + +E M P+ TY
Sbjct: 471 RLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYA 524
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ + +L Y M +R F + + G+ PD TT+ I + + F D ++
Sbjct: 277 VTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDE 336
Query: 315 MKHESVGPDLVTYGCVVDAYL-DKRLGRNLDF 345
M+ V P+ VTYG +++AY +K+ G L+
Sbjct: 337 MEENRVEPNDVTYGVIIEAYCKEKKSGEVLNL 368
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/328 (20%), Positives = 132/328 (40%), Gaps = 29/328 (8%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G + + + V++E++ ++ + +++ ++G N+ II+ + R Y
Sbjct: 142 GEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITY 201
Query: 153 SRAISCFGKQGQLELM---ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+ I + K G++ M + LKEM + G + T N I + + +++ +
Sbjct: 202 NTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAE 261
Query: 210 LKRSRHLIDKEGIRAVSFTY------LKERKFFMLGEFLRDVGLGRKDLGNLLW-NLLLL 262
+ R +G++ TY L LRD + N++ N LL
Sbjct: 262 MNR-------QGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLN 314
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
+ N +K F M + G P++TT+NI A+ + D M + V P
Sbjct: 315 GFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCP 374
Query: 323 DLVTYGCVVDAYL---DKRLGRNLDFGLSKMNLD--DSPVVSTDPYVFEAFGKGDFHSSS 377
D+ TY C++ D RNL +S+M+ + +++ + + KG+ +
Sbjct: 375 DVSTYNCLIAGLCRKGDLEAARNL---VSEMDTKHLKADLITYNILIDSLCNKGEMKKAL 431
Query: 378 EAFLEFKRQ----RKWTYRKLIAVYLKK 401
E R+ + TY +I Y K+
Sbjct: 432 RLLDEMCRKGLKPSQLTYNTMIDGYCKE 459
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 57/298 (19%), Positives = 123/298 (41%), Gaps = 20/298 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ + K A ++ + +G+ P+ T +L+ NNG V EA + +++++S
Sbjct: 242 LIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSC 301
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
++ + L++ + + + + D + + Y+ I + K +E
Sbjct: 302 LKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAF 361
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI---DKEGIRAVS 226
+ M+ +G D +T N I R G L + +R+L+ D + ++A
Sbjct: 362 ALYRIMLGKGVCPDVSTYNCLIAGLCRKGDL----------EAARNLVSEMDTKHLKADL 411
Query: 227 FTY-LKERKFFMLGEFLRDVGL----GRKDL--GNLLWNLLLLSYAGNFKMKSLQREFMR 279
TY + GE + + L RK L L +N ++ Y +++ +
Sbjct: 412 ITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQ 471
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
M + G ++ T+N+ F + D + L M + + P+ +TY V + ++K
Sbjct: 472 MEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEK 529
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 131/330 (39%), Gaps = 18/330 (5%)
Query: 39 RKQEGFV----DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
R+Q GF ++V LGR ++ +L+ + +G P+ T L+ CY +
Sbjct: 368 RRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANY 427
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VY 152
+ EA V+ E+ L+D + + G + +S+ ++ + A L P+ Y
Sbjct: 428 LKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRM--QEAGLSPDTFTY 485
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
S I+C GK G L EMV G + T N I ++ + Y ++
Sbjct: 486 SVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQN 545
Query: 213 SRHLIDKEGIRAV-----SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
+ DK V YL+E + + E + + + + LL + L AGN
Sbjct: 546 AGFQPDKVTYSIVMEALGHCGYLEEAESVFV-EMQQKNWVPDEPVYGLLVD--LWGKAGN 602
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ S + M AG P++ T N AF R+ D + ++ M + P L TY
Sbjct: 603 VEKAS--EWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTY 660
Query: 328 GCVVDAYLDKRLGRNLDFGLSKMNLDDSPV 357
++ + + ++ F M + P
Sbjct: 661 TLLLSCCTEAQPAHDMGFFCELMAVTGHPA 690
>gi|302819136|ref|XP_002991239.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
gi|300140950|gb|EFJ07667.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
Length = 561
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/260 (17%), Positives = 106/260 (40%), Gaps = 10/260 (3%)
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
++L Y +G V + + +++ + V ++++ + ++ YGR F++ ++ ++
Sbjct: 160 VLLAYCKDGQVDKTEGIFQRMAELGVVANIEMYTLQIEGYGRRRSFDKAEAVFQRLLTTG 219
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLK---EMVSRGFSVDSATGNAFIIYYSRFGSLT 201
+ Y + + + G+L+ ++ K + S D+ N I Y + G +
Sbjct: 220 PSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGKQGKVE 279
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYL--KERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
+ + Y +KR R + V+F L ++ + + R + + D +
Sbjct: 280 QAMSVYQSMKRERV-----ALTIVTFNSLLACQKTWKDAEDVFRKLQAAKLDPDVFSYTA 334
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
L+ +YA + + F M AG P +N A+++ L+ MK
Sbjct: 335 LVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNG 394
Query: 320 VGPDLVTYGCVVDAYLDKRL 339
P + +Y ++ AY+ L
Sbjct: 395 CTPTVESYTSLISAYVSVNL 414
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 105/283 (37%), Gaps = 47/283 (16%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+LV S + PD ++ Y G V +A V++ + L++ + L+
Sbjct: 248 KLVTDSPSPTVKPDARMYNLMIHTYGKQGKVEQAMSVYQSMKRERVALTIVTFNSLLACQ 307
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
++ + + A L P+V Y+ ++ + K + E +M++ G
Sbjct: 308 KTWKDAEDVFRKL-----QAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRP 362
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
NA I AY + K D EG RAV LK+ K +
Sbjct: 363 TQVAYNALI-------------NAYAKCK------DPEGARAV----LKQMKQNGCTPTV 399
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ L+ +Y M ++ +RM EA P+L TF + ++
Sbjct: 400 ES------------YTSLISAYVSVNLMAKAEQTVLRMKEADLQPNLQTFCVLMTGYANG 447
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345
+ ++ S E MK + P+ Y +V+AY G N DF
Sbjct: 448 NKLDNMMRSFETMKLAGLEPNRHVYTVLVNAY-----GSNDDF 485
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 113/289 (39%), Gaps = 35/289 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ KKK A ++ + GL PDN T L+ N V EA W++ +
Sbjct: 534 TLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRN 593
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ V S ++D + E D++ +N VY+ I + + G+L +
Sbjct: 594 GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMA 653
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
++M +G S +SAT + I S + E + + ++ EG+ F
Sbjct: 654 LELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRM-------EGLEPNVFH 706
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y L D G G+ LG ++ K++ L RE M HP+
Sbjct: 707 YTA----------LID-GYGK--LGQMV------------KVECLLRE---MHSKNVHPN 738
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
T+ + ++R + L M+ + + PD +TY + YL +
Sbjct: 739 KITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQ 787
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 73/153 (47%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ R + +A +L +K +G+ P+++T +L+ + V EA++++EE+
Sbjct: 640 LIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEG 699
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+V + L+D YG++G ++ ++ ++ +N Y+ I + + G +
Sbjct: 700 LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 759
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
L EM +G DS T FI Y + G + E
Sbjct: 760 RLLNEMREKGIVPDSITYKEFIYGYLKQGGVLE 792
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A V +E+ F +V V ++L+D++ G N+ I I D + + L Y+ I
Sbjct: 337 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 396
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ K GQ + E LKEM+S GF+V+ + + I
Sbjct: 397 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 431
>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 525
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 116/282 (41%), Gaps = 13/282 (4%)
Query: 63 AHQLVN-TVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
A +L+N V E + PD T L+ G V EA+ V+ ++ V + LM
Sbjct: 250 AVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALM 309
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRG 179
+ + GC +E + D++ R LP V YS I+ + K ++ L EM R
Sbjct: 310 NGWCLRGCMSEAKEVFDRMVERGK--LPNVISYSTLINGYCKVKMVDEALRLLTEMHQRN 367
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER---KFF 236
D+ T N + S+ G + ++ S D + YLK K
Sbjct: 368 LVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKAL 427
Query: 237 MLGEFLRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
L + + D G+ N+ +N+L+ +MK+ + F +S G P++ T+NI
Sbjct: 428 ALFQHIVDTGISP----NIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIM 483
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
R + + L M + P+ VT+ +V A L+K
Sbjct: 484 INGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLVRALLEK 525
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 113/281 (40%), Gaps = 17/281 (6%)
Query: 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
LA ++ + G D TL LM G EA +++ +S F L+
Sbjct: 109 LAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLI 168
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRG 179
+ ++G + I ++ ++ + P + Y+ + K+G + EMV +G
Sbjct: 169 NGLCKMGKTRDAIELLRKM--EKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKG 226
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY--LKER--KF 235
+D T N+ I + G G ++ ++ KE +R +T+ L + K
Sbjct: 227 ICIDVFTYNSLIHGFCGAGQFQ------GAVRLLNEMVMKEDVRPDVYTFNILVDALCKL 280
Query: 236 FMLGEFLRDVGLGRK---DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
M+ E GL K + + N L+ + M + F RM E G P++ ++
Sbjct: 281 GMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISY 340
Query: 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + ++ M + L M ++ PD VTY C++D
Sbjct: 341 STLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDG 381
>gi|242055653|ref|XP_002456972.1| hypothetical protein SORBIDRAFT_03g046570 [Sorghum bicolor]
gi|241928947|gb|EES02092.1| hypothetical protein SORBIDRAFT_03g046570 [Sorghum bicolor]
Length = 821
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 97/239 (40%), Gaps = 5/239 (2%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
YS I K G LE +++MVS G ++ + + + G ++E+ + + +
Sbjct: 337 YSYLIHSHCKMGNLEKAWYHIEDMVSHGIEINCHIVGSLLQCLRKLGMISEVIVHFQKFR 396
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+D Y K + L ++ G + + L+ Y + +
Sbjct: 397 DLGLHLDGVLYNVAMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLKGETE 456
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ + F +M +A PD+ T+NI + +SR + + LEHM + + P+ +TYG +
Sbjct: 457 NAWQVFEQMLKANIKPDVVTYNILSSGYSRNGLVMKVFDLLEHMMDQGLEPNSLTYGIAI 516
Query: 332 DAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHS--SSEAFLEFKRQRK 388
+ G NL N+ + + ++ + G HS + A++ F R K
Sbjct: 517 AGFCR---GGNLSEAEVLFNIVEEKGIDNIDVLYSSMVCGYLHSGWTDHAYMLFLRVAK 572
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/278 (18%), Positives = 114/278 (41%), Gaps = 3/278 (1%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+N + + GL+PD L+ Y G A V+E++L ++ V + L
Sbjct: 423 AVKLLNEMMAGGLVPDKIHYTCLINGYCLKGETENAWQVFEQMLKANIKPDVVTYNILSS 482
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y R G ++ +++ + + + Y AI+ F + G L E + +G
Sbjct: 483 GYSRNGLVMKVFDLLEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAEVLFNIVEEKGIDN 542
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
++ + Y G + R+ + +++D + ++ K +
Sbjct: 543 IDVLYSSMVCGYLHSGWTDHAYMLFLRVAKQGNMVDHLSCSKLINGLCRDEK-VQEASTV 601
Query: 243 RDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ L + + +++ ++ L+ +Y + M++ F M E G D+T + I + +
Sbjct: 602 CSMMLEKNVVPHVISYSKLISAYCQSRDMRNAHLWFHDMVERGL-SDVTAYTILMNGYCK 660
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
+ + M + + PD+V Y ++D +L + L
Sbjct: 661 VGQLQEACELFVQMVNLGIKPDVVAYTVLLDGHLKETL 698
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 56/285 (19%), Positives = 117/285 (41%), Gaps = 18/285 (6%)
Query: 67 VNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126
+ + S G+ + + +L+ C G + E V +++ L + + MDAY +
Sbjct: 357 IEDMVSHGIEINCHIVGSLLQCLRKLGMISEVIVHFQKFRDLGLHLDGVLYNVAMDAYCK 416
Query: 127 IGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
+G NE + +++++ L+P+ Y+ I+ + +G+ E ++M+ D
Sbjct: 417 LGNMNEAVKLLNEM--MAGGLVPDKIHYTCLINGYCLKGETENAWQVFEQMLKANIKPDV 474
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
T N YSR G + ++ H++D +G+ S TY F G L +
Sbjct: 475 VTYNILSSGYSRNGLVMKV------FDLLEHMMD-QGLEPNSLTYGIAIAGFCRGGNLSE 527
Query: 245 VG-----LGRKDLGNL--LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
+ K + N+ L++ ++ Y + F+R+++ G D + +
Sbjct: 528 AEVLFNIVEEKGIDNIDVLYSSMVCGYLHSGWTDHAYMLFLRVAKQGNMVDHLSCSKLIN 587
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
R + M ++V P +++Y ++ AY R RN
Sbjct: 588 GLCRDEKVQEASTVCSMMLEKNVVPHVISYSKLISAYCQSRDMRN 632
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/332 (20%), Positives = 137/332 (41%), Gaps = 35/332 (10%)
Query: 21 SHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKP-HLAHQLVNTVKSEGLLPDN 79
+H+ P I + K D ++ ++G K + A +L ++ +GL+PD
Sbjct: 217 AHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDL 276
Query: 80 STLCALMLCYANNGFVLE-----AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134
T L+ NGF +E A+++ E++ + L+D + R G +
Sbjct: 277 YTYDILI-----NGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAF 331
Query: 135 SIIDQ-VSCR-NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
I D+ V+C A+L+ +++ ++ K G++E ++EM+ +G DS T + I
Sbjct: 332 RIKDEMVACGIEANLI--IWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIE 389
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM----------LGEFL 242
+ R ++ R+ L+D+ R ++ T L L
Sbjct: 390 GHCRGQNMA----------RAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAIL 439
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
R++ + +++ L+ ++A +++ + RM E G PD+ +N + F +
Sbjct: 440 REMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKA 499
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ L M + P+ TYG +D Y
Sbjct: 500 KRMEEARTYLMEMLERRLRPNAHTYGAFIDGY 531
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 106/270 (39%), Gaps = 10/270 (3%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL P+ LM +A G V E++++ E + + V + L+ + + E
Sbjct: 446 GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEA 505
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ + ++ R Y I + K G++E+ + EM+S G + A I
Sbjct: 506 RTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEG 565
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEG----IRAVSFTYLKERKFFMLGEFLRDVGLGR 249
+ + G++TE + + + R L D + I +S F + E L++ GL
Sbjct: 566 HCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSE-LQEKGL-- 622
Query: 250 KDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
L N +N L+ + + M G +PD+ T+NI +
Sbjct: 623 --LPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERA 680
Query: 309 HLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+ ++ + P+ VTY +VD Y +
Sbjct: 681 KNLFDDIEGRGLTPNCVTYAAMVDGYCKSK 710
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 64/323 (19%), Positives = 120/323 (37%), Gaps = 17/323 (5%)
Query: 23 QTHPKNGDLA------RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+ H K G++ R I+ R + + L+ L R K H A + + ++ +GLL
Sbjct: 564 EGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLL 623
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P+ T +L+ G V +A + EE+ + + L+D + G ++
Sbjct: 624 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNL 683
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
D + R Y+ + + K L+EM+ RG D+ IY
Sbjct: 684 FDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDA------FIYNVI 737
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT-----YLKERKFFMLGEFLRDVGLGRKD 251
+ E L + +++K VSF Y K K L ++ +
Sbjct: 738 LNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFI 797
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
++ + L+ M +R ++ M E P T+ + + ++
Sbjct: 798 PNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSAL 857
Query: 312 LEHMKHESVGPDLVTYGCVVDAY 334
E M + + PD +TY ++DAY
Sbjct: 858 FEEMVAKGIEPDKMTYYVMIDAY 880
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 50/114 (43%)
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
Y +G + EA + EE++ F+ + + L+D + G E + ++ RN
Sbjct: 775 YCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPT 834
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ Y+ + + G + + +EMV++G D T I Y R G++ E
Sbjct: 835 AKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVME 888
>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
Length = 461
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/291 (18%), Positives = 114/291 (39%), Gaps = 18/291 (6%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN---NGFVLE-----A 98
C L++ L + + A +L+ ++PD+ C + N NGF E A
Sbjct: 158 CTILLKGLCDENRSQEALELLQ------MMPDDGGDCPPDVVLYNTVINGFFKEGDPDKA 211
Query: 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAI 156
+ E+ + V S ++ A + ++ + +++ + +N ++P Y+ +
Sbjct: 212 YATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMV-KNG-VMPNCRTYNSIV 269
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
+ GQL LK M S G D T N + Y + TE + + +
Sbjct: 270 HGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLK 329
Query: 217 IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276
D + Y + + + L + + ++N+L+ +YA K+
Sbjct: 330 PDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLV 389
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
F +M + G P+ + ++ +D L+L+ M +E + PD++ Y
Sbjct: 390 FSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVY 440
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 41 QEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100
+ V C L++ L + ++ A ++ N++ GL PD +T C L+ YA G ++E
Sbjct: 294 EPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHD 353
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISC 158
+ + ++ + + V + L+ AY + +E + + ++ R L P Y I
Sbjct: 354 LLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKM--RQQGLSPNAVNYRTVIDV 411
Query: 159 FGKQGQLELMENTLKEMVSRGFSVD 183
K G++ TLK+M++ G + D
Sbjct: 412 LCKLGRVYDAVLTLKQMINEGLTPD 436
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 71/367 (19%), Positives = 143/367 (38%), Gaps = 52/367 (14%)
Query: 30 DLARKIIRYRKQEGFV-DCA---SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A +++ + G + DC S+V +P A + ++S+G+ PD T +L
Sbjct: 140 DKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSL 199
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
M NG EA+ +++ + + L+ Y G E+ ++D + RN
Sbjct: 200 MDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD-LMVRNG 258
Query: 146 DLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI------------ 191
+ P V+S + + KQ ++E +M +G + ++ T A I
Sbjct: 259 -IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 317
Query: 192 -IYYSR------------FGSLTEMETAYGRLKRSRHLIDKEGIRAVSF----------T 228
+Y+ + + SL + +R+ LI + R + +
Sbjct: 318 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 377
Query: 229 YLKERKFF---MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
+ KE + L + + +G+ + D+ + ++ L+ Y KM + M G
Sbjct: 378 HCKEGRVIESEKLFDLMVRIGV-KPDI--ITYSTLIDGYCLAGKMDEATKLLASMVSVGM 434
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR---LGRN 342
PD T++ + ++S D + M+ V PD++TY ++ R +
Sbjct: 435 KPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 494
Query: 343 LDFGLSK 349
L G++K
Sbjct: 495 LYVGITK 501
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 80/192 (41%), Gaps = 2/192 (1%)
Query: 145 ADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
D P+V YS I+ F K+G L+ +T EM+ + S + T N+ I + ++ +
Sbjct: 82 GDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDK 141
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+ +S + D ++ + + FL+ + + + +N L+
Sbjct: 142 AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD 201
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
N + ++ F M++ G P++TT+ ++ ++H L+ M + P
Sbjct: 202 YLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 261
Query: 323 DLVTYGCVVDAY 334
+ + +V AY
Sbjct: 262 NHYVFSILVCAY 273
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/278 (18%), Positives = 107/278 (38%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ +P A ++ + GL PD +T L+ G + +A ++++++
Sbjct: 108 LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 167
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
F +V L++ ++G N I ++ + N VY+ I K Q+
Sbjct: 168 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAF 227
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
N +MV +G S D T + I + T ++ S+ + D V
Sbjct: 228 NLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDAL 287
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
KE K + + + + + + +N L+ + +M + F M G+ P++
Sbjct: 288 CKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNV 347
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
++N + ++ E M + + P+ VTY
Sbjct: 348 ISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTY 385
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 57/305 (18%), Positives = 117/305 (38%), Gaps = 39/305 (12%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L R + + Q V S+++ L + ++ A L + + +G+ PD T +L+
Sbjct: 194 LLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLC 253
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
N + ++++S + V + S ++DA + G E ++D + R +
Sbjct: 254 NLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVV 313
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y+ + Q +++ MV G++ + + N I Y ++
Sbjct: 314 TYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLI-------------NGYCKI 360
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL--GNLLWNLLLLSYAGNF 268
+R +DK TYL E + +K+L + +N L+
Sbjct: 361 QR----MDKA-------TYLFEE-------------MCQKELIPNTVTYNTLMHGLCHVG 396
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+++ F M G PDL T+ I + S + L+ ++ ++ PD+ Y
Sbjct: 397 RLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYT 456
Query: 329 CVVDA 333
V+D
Sbjct: 457 IVIDG 461
>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 118/292 (40%), Gaps = 14/292 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ GRK + ++ ++ G +P+ + L+ C +LEAQ+V ++
Sbjct: 465 LIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRG 524
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V++ + L+D G + ++ + +L Y+ I G+L E
Sbjct: 525 VSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAE 584
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+ L E+ +G D T N+ I Y G++ Y +KRS GI+ TY
Sbjct: 585 DLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRS-------GIKPTLKTY 637
Query: 230 -----LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
L ++ L E L + DL L++N +L YA + M+ +M E
Sbjct: 638 HLLISLCTKEGIELTERLFGEMSLKPDL--LVYNGVLHCYAVHGDMEKAFNLQKQMIEKS 695
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
D TT+N + ++ ++ ++ M + P+ TY +V + +
Sbjct: 696 IGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCE 747
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 109/257 (42%), Gaps = 21/257 (8%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A+ +++E+L+ + S+ + L+D Y + G + + +++ + + ++ +
Sbjct: 232 DAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLL 291
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
K G +E EN LKEM GF D+ T F I + + S + E A G + +
Sbjct: 292 KGLFKAGMVEDAENVLKEMKDLGFVPDAFT---FSILFDGYSSNEKAEAALGVYETA--- 345
Query: 217 IDKEGIRAVSFT-------YLKERKFFMLGEFL-RDVGLGRKDLGNLLWNLLLLSYAGNF 268
+D G++ ++T KE K E L R++ G +++N ++ Y
Sbjct: 346 VDS-GVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVP-NEVIYNTMIDGYCRKG 403
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+ + + M + G PD +N F + + + MK + V P + TY
Sbjct: 404 DLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYN 463
Query: 329 CVVDAYLDKRLGRNLDF 345
++ Y GR +F
Sbjct: 464 ILIGGY-----GRKYEF 475
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ L K A L+ + +GL PD T +L+ Y G V ++EE+ S
Sbjct: 569 TLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRS 628
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV---SCRNADLLPEVYSRAISCFGKQGQL 165
+++ L+ C E I + +++ DLL VY+ + C+ G +
Sbjct: 629 GIKPTLKTYHLLISL-----CTKEGIELTERLFGEMSLKPDLL--VYNGVLHCYAVHGDM 681
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
E N K+M+ + +D T N+ I+ + G L E+ R LID+ R
Sbjct: 682 EKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEV----------RSLIDEMNAR 729
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 56/292 (19%), Positives = 104/292 (35%), Gaps = 48/292 (16%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A +VED A ++ +K G +PD T L Y++N A V+E +
Sbjct: 297 AGMVED---------AENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVD 347
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
S ++ S L++A + G + I+ + + L+P +Y+ I + ++G L
Sbjct: 348 SGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKG--LVPNEVIYNTMIDGYCRKGDL 405
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
++ M +G D N I RF L EME A + + + +G+
Sbjct: 406 VGARMKIEAMEKQGMKPDHLAYNCLI---RRFCELGEMENAEKEVNKMKL----KGVSPS 458
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
TY N+L+ Y ++ M + G
Sbjct: 459 VETY----------------------------NILIGGYGRKYEFDKCFDILKEMEDNGT 490
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
P++ ++ + S + + M+ V P + Y ++D K
Sbjct: 491 MPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSK 542
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 47 CASLVEDLGRKK-KPHLA--HQLVNTVKSEG------------LLPDNSTLCALMLCYAN 91
C +L E++ R KP L H L++ EG L PD ++ CYA
Sbjct: 618 CIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAV 677
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151
+G + +A + ++++ S L + L+ ++G E+ S+ID+++ R ++ PE
Sbjct: 678 HGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAR--EMEPEA 735
Query: 152 YSRAISCFGKQGQLELMENTL--KEMVSRGFSVDSATGNAFI 191
+ I G + M + +EM +GF +D GN +
Sbjct: 736 DTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELV 777
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 28/323 (8%)
Query: 27 KNGDLA--RKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K G+LA R + K+ G V SL++ G+ + QLV ++ G D
Sbjct: 200 KEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVV 259
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T AL+ C+ G + A + + + +V S +DA+ + G E + + Q+
Sbjct: 260 TYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQM 319
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L Y+ I K G+L+ L EMV +G ++ T + + +
Sbjct: 320 RVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKV 379
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----------KERKFFMLGEFLRDVGLGR 249
E E +++K G+RA Y E+ +L E +++ GL
Sbjct: 380 AEAEDVL-------RMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSE-MKNKGL-- 429
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+L L+ L+ K+ + +M E+G P+ + A + +
Sbjct: 430 -ELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAI 488
Query: 310 LSLEHMKHESVGPDLVTYGCVVD 332
L+ + P+++TY ++D
Sbjct: 489 AMLQKILDSGFQPNVITYCALID 511
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 8/180 (4%)
Query: 27 KNGDLARKIIRYRKQEGF-VDCA---SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
KN + A ++ K +G +D + +L++ L K A L+ + GL P+
Sbjct: 412 KNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIY 471
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
+M +G V EA + +++L S F +V L+D + G +E IS +++
Sbjct: 472 TTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKM-- 529
Query: 143 RNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R+ L P V Y+ + K G L EMV +G S+D A + Y + G+L
Sbjct: 530 RDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNL 589
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 77/187 (41%)
Query: 26 PKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
P+ + +KI+ Q + +L++ L + A N ++ GL P+ AL
Sbjct: 485 PEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTAL 544
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ NG + EA ++ E++ L V + L+D Y + G ++ ++ ++
Sbjct: 545 VDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGL 604
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
L Y+ IS F + EM+ G + D A N I Y + G+L E +
Sbjct: 605 QLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAIS 664
Query: 206 AYGRLKR 212
++R
Sbjct: 665 LQDEMER 671
>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
Length = 694
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 119/299 (39%), Gaps = 28/299 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ G+ + LV+ ++ G D T AL+ C++ G++ +A + E+
Sbjct: 239 SLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRL 298
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
+ +V LS +DA+ + G E + + Q+ R ++P Y+ + K G+L+
Sbjct: 299 GVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRG--MMPNEFTYTSLVDGTCKAGRLD 356
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
L EMV +G + T + + G + + L+++ G++A
Sbjct: 357 DAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLS-------LMERAGVKANE 409
Query: 227 FTYL-----------KERKFFMLGEFL-RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
Y ER +L E + + L G L+W L + K+ +
Sbjct: 410 LLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQ-----KLDEAK 464
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+M + G P+ + AF + + L + + P++VTY ++D
Sbjct: 465 SLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDG 523
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L++ + GL P+ T CAL+ G + EA ++++ +VQV + L+D
Sbjct: 498 AVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLID 557
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ +IG ++ + +++++ + L VY+ I KQG L+ +M+ G +
Sbjct: 558 GFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQL 617
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRL 210
D FI S F ++ M+ A G L
Sbjct: 618 DLYCYTCFI---SGFCNMNMMQEARGVL 642
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 45/191 (23%)
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+V Y+ I +GK G+LE +E + EM G + D T NA I +S+FG + + +
Sbjct: 232 PDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSY 291
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
+G +KR LG + + L ++
Sbjct: 292 FGEMKR---------------------------------------LGVMANVVTLSTFVD 312
Query: 267 NFKMKSLQRE----FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
F + L RE F +M G P+ T+ + D + L+ M H+ + P
Sbjct: 313 AFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVP 372
Query: 323 DLVTYGCVVDA 333
++VTY +VD
Sbjct: 373 NVVTYTVMVDG 383
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 4/178 (2%)
Query: 27 KNGDLARKIIRYRKQEGF-VDCA---SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
KN + A ++ K +G +D + +L+ L + +K A L++ + GL P+
Sbjct: 423 KNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIY 482
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
+M + G EA + ++ S +V L+D + G E IS D++
Sbjct: 483 TTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRE 542
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
D +VY+ I F K G L + + EMV +G S+D + I + + G L
Sbjct: 543 LGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDL 600
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 127/315 (40%), Gaps = 20/315 (6%)
Query: 32 ARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
R+I+ ++G V +L++ ++ A ++++ + S P+ T L+
Sbjct: 128 GRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELIC 187
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ V A + ++L S SV + L+ +IG + +++ ++ +
Sbjct: 188 GFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMN--ENGV 245
Query: 148 LPE--VYSRAISCFGKQGQLE---LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+P+ YS I K+G++E ++ N+LKE +G + A I Y + G + +
Sbjct: 246 VPDQWTYSVFIDTLCKKGRIEEANVLFNSLKE---KGIKANEVIYTALIDGYCKAGKMDD 302
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLGEFLRDVGLGRKDLGNLLWNL 259
+ R+ L + A+ KERK +L E + GL + +
Sbjct: 303 ANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGL---KCTVPTYTI 359
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
L+++ R +M +G+ PD+ + AF + + M
Sbjct: 360 LIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERG 419
Query: 320 VGPDLVTYGCVVDAY 334
V PD +TY V+DAY
Sbjct: 420 VMPDALTYTLVIDAY 434
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 12/289 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L++ + K A+ L++ + +E LP++ST AL+ V EA ++ E ++
Sbjct: 288 TALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQ 347
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+V + L+ A + G F+ I+DQ+ +Y+ I F +G ++
Sbjct: 348 KGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKE 407
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
E+ + M RG D+ T + + +G L + A+ LKR + D G
Sbjct: 408 AEDMMSMMFERGVMPDALT---YTLVIDAYGGLGLLNPAFDVLKR---MFDT-GCDPSHH 460
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE---FMRMSEAG 284
TY K + E + L + + N+ A +KM + F +M E G
Sbjct: 461 TYSCLIKHLLKEELTKK--YKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHG 518
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
P++ T+ + ++ +HM V P Y +++
Sbjct: 519 CSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNC 567
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 120/315 (38%), Gaps = 43/315 (13%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHL--AHQLVNTVKSEGLLPDNSTLCALMLC 88
L K++ R V SL+ G+ K +L A++L+N + G++PD T +
Sbjct: 201 LLSKMLESRLTPSVVTYNSLIH--GQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDT 258
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
G + EA V++ L + + + L+D Y + G ++ S++D++ D L
Sbjct: 259 LCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRM--LTEDCL 316
Query: 149 PE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P Y+ I K+ +++ ++ M+ +G T I+ L E
Sbjct: 317 PNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIV-----AMLKE---- 367
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
G + ++D+ VS Y + D+ ++ + ++
Sbjct: 368 -GDFDYAHRILDQ----MVSSGY-------------------QPDV--YIYTAFIHAFCT 401
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+K + M E G PD T+ + A+ + + L+ M P T
Sbjct: 402 RGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHT 461
Query: 327 YGCVVDAYLDKRLGR 341
Y C++ L + L +
Sbjct: 462 YSCLIKHLLKEELTK 476
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 61/318 (19%), Positives = 123/318 (38%), Gaps = 27/318 (8%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L + ++ G P+ T ++ + E + + +E++ V SV + L+D
Sbjct: 93 AINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALID 152
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y + G I+D + + + Y+ I F ++ + L +M+ +
Sbjct: 153 GYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTP 212
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL----------KE 232
T N+ I + G L ++AY R +L+++ G+ +TY +
Sbjct: 213 SVVTYNSLIHGQCKIGYL---DSAY----RLLNLMNENGVVPDQWTYSVFIDTLCKKGRI 265
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ +L L++ G+ + +++ L+ Y KM RM P+ +T+
Sbjct: 266 EEANVLFNSLKEKGIKANE---VIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTY 322
Query: 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNL 352
N + + L +E M + + + TY ++ A L + DF + L
Sbjct: 323 NALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAML-----KEGDFDYAHRIL 377
Query: 353 DD--SPVVSTDPYVFEAF 368
D S D Y++ AF
Sbjct: 378 DQMVSSGYQPDVYIYTAF 395
>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 115/288 (39%), Gaps = 10/288 (3%)
Query: 40 KQEGFV-DCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
KQ G + D S L+ GR ++P A ++ ++ E P+ T AL+ Y +NGF+
Sbjct: 382 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFL 441
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
EA ++ ++ +V + L+ A R + +++ R +L Y+ A
Sbjct: 442 AEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSA 501
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I + +LE + M + DS T F I S +++ A LK
Sbjct: 502 IGSYINAAELEKAIALYQSMRKKKVKADSVT---FTILISGSCRMSKYPEAISYLKEMED 558
Query: 216 L---IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
L + KE +V Y K+ + + + + + + +L +Y + K
Sbjct: 559 LSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGK 618
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
F+ M G PD + AF++ ++ + ++ M+ + +
Sbjct: 619 ACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEI 666
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/292 (18%), Positives = 117/292 (40%), Gaps = 11/292 (3%)
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+A + +V +A+ ++ E+ S + L++A+GR G + ++++D + A +
Sbjct: 153 HARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDM--LRAAIA 210
Query: 149 PE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P Y+ I+ G G K+M G D T N + Y ++ +
Sbjct: 211 PSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSY 270
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLK----ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+ +K ++ D + + K + + R D+ + L
Sbjct: 271 FELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLY 330
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
S G ++++ + F M G P++ ++N A++ M L +K + P
Sbjct: 331 SVKG--EIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIP 388
Query: 323 DLVTYGCVVDAY-LDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDF 373
D+V+Y C++++Y ++ G+ + L P V T + +A+G F
Sbjct: 389 DVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGF 440
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 105/267 (39%), Gaps = 18/267 (6%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T ++M Y+ G + + V+E +++ ++ + LM AY G +S+
Sbjct: 318 PDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSV 377
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ + + ++P+V Y+ ++ +G+ Q + M + T NA I Y
Sbjct: 378 LGDI--KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAY 435
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIR--AVSFTYL-----KERKFFMLGEFLRDVGL 247
G L E + ++ +++GI+ VS L + +K + L
Sbjct: 436 GSNGFLAEAVEIFRQM-------EQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQS 488
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
+L +N + SY +++ + M + D TF I RMS + +
Sbjct: 489 RGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPE 548
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAY 334
L+ M+ S+ Y V+ AY
Sbjct: 549 AISYLKEMEDLSIPLTKEVYSSVLCAY 575
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 77/364 (21%), Positives = 148/364 (40%), Gaps = 43/364 (11%)
Query: 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102
G D + +V+ LG+ K + A + +K P ++T +++L G + ++
Sbjct: 158 GPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELY 217
Query: 103 EELLSSSFVLSVQVL-SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
E+ + L V S L+ A+G++G + IS+ D++ ++Y+ + + K
Sbjct: 218 NEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFK 277
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
G++E ++EM +G ++ T I G ++E AY
Sbjct: 278 LGRVEKALGLVQEMKEKGCALTVYTYTELI---KGVGKAGKVEEAY-------------- 320
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL-LLSYAGNFKMKSLQREFMRM 280
++ LKE G K L+ NL+ LL AG ++ + F M
Sbjct: 321 --SIFMNMLKE---------------GCKPDVVLINNLINLLGKAG--RLADAIKLFEEM 361
Query: 281 SEAGFHPDLTTFN--IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
P++ T+N I+A+ F + + L E MK V P TY ++D +
Sbjct: 362 ESLQCTPNVVTYNTVIKAL-FESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTN 420
Query: 339 LGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGD-FHSSSEAFLEFKRQRKWTYRKLIA 396
L +M+ +P + + A GK + +++E F E + ++ ++ A
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYA 480
Query: 397 VYLK 400
V +K
Sbjct: 481 VMIK 484
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 7/164 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A +++ LG+ + A L N +K G PD ALM G EA + +
Sbjct: 480 AVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEE 539
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
+ + + +++ + R G I + ++ +N+ + P+V Y+ + C + G
Sbjct: 540 NGCTPDLNSHNIILNGFARTGGPKGAIEMFTRM--KNSKIKPDVVSYNTVLGCLSRAGMF 597
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
E +KEM S+GF D T ++ + G + E T G+
Sbjct: 598 EEAAKLMKEMNSKGFEYDLITYSSIL---EAVGKIDEDHTPAGQ 638
>gi|255661178|gb|ACU25758.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 352
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 39/219 (17%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V +++ G+ K A L++ +++ G++P+ ++ L+ Y N
Sbjct: 71 KRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKF 130
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--------------------------- 128
LEA V+ E+ +L + + ++D YG++G
Sbjct: 131 LEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 190
Query: 129 --------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
F E I + + +N + Y+ + +GK + E N ++EM +RG
Sbjct: 191 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGI 250
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
+S T + I + + G L + +L+ S ID+
Sbjct: 251 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQ 289
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 72/170 (42%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 212 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLD 271
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
+++ S G +D I+ Y R G + + LKR ++
Sbjct: 272 RAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNI 321
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSXKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS + D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 111/266 (41%), Gaps = 6/266 (2%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL P+ T L+ G + E + +E+ S V S L D R G +
Sbjct: 261 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 320
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFG--KQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+S+ + S +N + + Y+ +I G K G++ + E L+ +V+ G N I
Sbjct: 321 LSLFGK-SLKNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLI 378
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHL-IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
Y + G L + +G++K SRH+ D A+ K + + L ++
Sbjct: 379 NGYCQTGELEGAFSTFGQMK-SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGV 437
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+ +N L+ +Y +++ M E G P++ ++ AF + +
Sbjct: 438 NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVA 497
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLD 336
L+ M H+ V P+ Y ++DAY++
Sbjct: 498 ILDDMFHKDVLPNAQVYNAIIDAYVE 523
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 70 VKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
+KS + PD+ T AL+ LC A + AQ + E+ + +V+ + L+DAYGR
Sbjct: 397 MKSRHIKPDHITYNALINGLCKAER--ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRT 454
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
G + ++ ++ + L P V Y ++ F K G++ L +M + ++
Sbjct: 455 GQLEKCFIVLSEM--QENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQ 512
Query: 186 TGNAFIIYYSRFG 198
NA I Y G
Sbjct: 513 VYNAIIDAYVEHG 525
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 9/184 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L + ++ A L+ ++ G+ P T L+ Y G + + +V E+ +
Sbjct: 411 ALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQEN 470
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQGQLE 166
+V +++A+ + G E ++I+D + + D+LP +VY+ I + + G +
Sbjct: 471 GLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM--FHKDVLPNAQVYNAIIDAYVEHGPND 528
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++M S G S T N I ++E E L R + D AVS
Sbjct: 529 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPD-----AVS 583
Query: 227 FTYL 230
+ L
Sbjct: 584 YNTL 587
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 108/266 (40%), Gaps = 6/266 (2%)
Query: 74 GLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
GL P+ T L+ LC A G + E + +E+ S V S L D R G
Sbjct: 80 GLKPNAITYNVLLSGLCRA--GRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSK 137
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
++S+ + + S ++ K G++ + E L+ +V+ G N I
Sbjct: 138 AMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLI 197
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHL-IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
Y + G L + +G++K SRH+ D A+ K + + L ++
Sbjct: 198 NGYCQTGELEGAFSTFGQMK-SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGV 256
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+ +N L+ +Y +++ M E G P++ ++ AF + +
Sbjct: 257 NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVA 316
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLD 336
L+ M H+ V P+ Y ++DAY++
Sbjct: 317 ILDDMFHKDVLPNAQVYNAIIDAYVE 342
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 9/184 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L + ++ A L+ ++ G+ P T L+ Y G + + +V E+ +
Sbjct: 230 ALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQEN 289
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQGQLE 166
+V +++A+ + G E ++I+D + + D+LP +VY+ I + + G +
Sbjct: 290 GLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK--DVLPNAQVYNAIIDAYVEHGPND 347
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++M S G S T N I ++E E L R + D AVS
Sbjct: 348 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPD-----AVS 402
Query: 227 FTYL 230
+ L
Sbjct: 403 YNTL 406
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 70 VKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
+KS + PD+ T AL+ LC A + AQ + E+ + +V+ + L+DAYGR
Sbjct: 216 MKSRHIKPDHITYNALINGLCKAER--ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRT 273
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
G + ++ ++ + L P V Y ++ F K G++ L +M + ++
Sbjct: 274 GQLEKCFIVLSEM--QENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQ 331
Query: 186 TGNAFIIYYSRFG 198
NA I Y G
Sbjct: 332 VYNAIIDAYVEHG 344
>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
Length = 627
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 116/288 (40%), Gaps = 14/288 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+S++ + ++P LA Q + E L PD+ + A G + V ++
Sbjct: 124 SSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIK 183
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ + + V V S L+D Y + G E ++ D++ RN +S I + + G+ E
Sbjct: 184 TGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNV----VSWSGMIYGYTQLGEHEE 239
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA---YGRLKRSRHLIDKEGIRA 224
KE + G V+ T ++ I GS T +E +G ++ + D G
Sbjct: 240 AMRLFKEALLEGLDVNDFTLSSVI---RVCGSATLLELGKQIHGLCFKTSY--DLSGFVG 294
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
S L + + G + + K+LG +WN +L++ A + K F +M AG
Sbjct: 295 SSLISLYSKCGLIEGAYRVFDEVPIKNLG--MWNAMLIACAQHAHTKEAFDLFTKMENAG 352
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
P+ TF A S + + MK + P Y +VD
Sbjct: 353 MRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVD 400
>gi|356502612|ref|XP_003520112.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 697
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/296 (18%), Positives = 120/296 (40%), Gaps = 20/296 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ +LG K A Q + +G+ L AL+ + G +A ++ E+
Sbjct: 292 TVMRELGHSAKD--AWQFFEKMNRKGVRWSEEVLGALINSFCVEGLRRQALIIQSEMEKK 349
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
S V + LMDA+ + + ++ + + Y+ + + ++ Q +++
Sbjct: 350 GVSSSAIVYNTLMDAFCKSNHIEAAEGLFVEMKAKGIKPIAATYNILMHAYSRRMQPKIV 409
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
E L+EM G ++ + II Y + ++++M A LK + K G++ S +
Sbjct: 410 EKLLEEMQDVGLKPNATSYTCLIIAYGKQKNMSDMAAADAFLK-----MKKVGVKPTSQS 464
Query: 229 YLK----------ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
Y K + E +++ G+ + + L +AG+ ++L +
Sbjct: 465 YTALIHAYSVSGLHEKAYAAFENMQNEGI-KPSIETYTTLLNAFRHAGD--AQTLMEIWK 521
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M TFNI F++ +F + + + P +VTY +++AY
Sbjct: 522 LMISEKVEGTGATFNILVDGFAKQGLFMEAREVISEFGKVGLKPTVVTYNMLINAY 577
>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 608
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 11/291 (3%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L++ V+ G+ PD+ A++ ++ +G V EA +++++ + + + L+ YG
Sbjct: 115 LISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYG 174
Query: 126 RIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
G E + ++ +S + + P Y+ + + + +E N L +MV+ G D
Sbjct: 175 NAGKPEEGLKMLHLMSL-DGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPD 233
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
T N Y++ G E ++ + ++ + Y KE E LR
Sbjct: 234 VVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMI---EALR 290
Query: 244 DVGLGRKDLG---NL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
V K+LG NL ++N L+ + + M E G PD+ TF+ A+
Sbjct: 291 FV-YRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAW 349
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
S + M + PD+ + + Y+ N + L+ M
Sbjct: 350 SSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSM 400
>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 630
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 105/257 (40%), Gaps = 5/257 (1%)
Query: 41 QEGFVDCA-SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLE 97
+EG ++ A S ++++ + K +A +L N +K++G PD T L+ LCY G + E
Sbjct: 275 KEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCY--RGKLQE 332
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157
A + E+ S +V + L+D + + E I DQ+ + Y+ I
Sbjct: 333 ALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLID 392
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
K +++ + +M+ G D T N+ + Y+ R G + + + +
Sbjct: 393 GLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEP 452
Query: 218 DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277
D + K + + LR + L L +N ++ + + K R F
Sbjct: 453 DIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLF 512
Query: 278 MRMSEAGFHPDLTTFNI 294
M E G PD T+ I
Sbjct: 513 REMEEKGNTPDAFTYKI 529
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 59/298 (19%), Positives = 113/298 (37%), Gaps = 51/298 (17%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L + + A ++ + S GL+PD T LM + G + A V E++L +
Sbjct: 199 LIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAG 258
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS--------------CRNADLLPE--VYS 153
++ ++ L+ + + G E +S ID++S +N P+ Y+
Sbjct: 259 CPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYN 318
Query: 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
I +G+L+ L+EM G + + T N I + + + E E + ++
Sbjct: 319 MLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQM--- 375
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
+ +G+ S TY N L+ + +++
Sbjct: 376 ----EIQGLSRNSVTY----------------------------NTLIDGLCKSRRVQEA 403
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ +M G PD T+N F R ++ M PD+VTYG ++
Sbjct: 404 AQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLI 461
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 34/187 (18%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+Y + GK G M++ L+EM +D FI Y++F E+
Sbjct: 89 IYEEILRKLGKVGSFNSMKDILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEI------- 141
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ + E +F GL L LL+N LL K+
Sbjct: 142 --------------LCIVEVMEVEF----------GLA---LDTLLYNFLLNVLVDGNKL 174
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
K ++ M G PD++TFNI A + L +E M + PD T+ +
Sbjct: 175 KLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTL 234
Query: 331 VDAYLDK 337
+ ++++
Sbjct: 235 MQGFIEE 241
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/279 (18%), Positives = 106/279 (37%), Gaps = 14/279 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ T+K + + PD+ T +L+ G + EA ++EE++ S + + L+D
Sbjct: 275 ADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLID 334
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ G + + D++ + Y+ I + + + E +KE+ +G S
Sbjct: 335 GFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISP 394
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-------KERKF 235
D+ T N I Y R + + + + S GI+ TY K+ +
Sbjct: 395 DAITYNILINGYCRCANAKKAFLLHDEMLAS-------GIKPTKKTYTSLLHVLSKKNRM 447
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
+ + + +++N L+ + N +K M PD TFN
Sbjct: 448 KEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTI 507
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R + + MK + PD +++ ++ Y
Sbjct: 508 MQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGY 546
>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g51965, mitochondrial; Flags: Precursor
gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
thaliana]
gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
Length = 650
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ K+ H L +K +G PD T L+ + G V EA ++EEL S
Sbjct: 452 LGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPD 511
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
+ + L++ G+ G +E ++ + L P+V YS + CFGK ++E+ +
Sbjct: 512 IISYNSLINCLGKNGDVDEAHVRFKEM--QEKGLNPDVVTYSTLMECFGKTERVEMAYSL 569
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+EM+ +G + T N + + G E Y ++K ++G+ S TY
Sbjct: 570 FEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMK-------QQGLTPDSITY 620
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ GR + A + ++ PD + +L+ C NG V EA V ++E+
Sbjct: 483 LIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKG 542
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V S LM+ +G+ S+ +++ + Y+ + C K G+
Sbjct: 543 LNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAV 602
Query: 170 NTLKEMVSRGFSVDSAT 186
+ +M +G + DS T
Sbjct: 603 DLYSKMKQQGLTPDSIT 619
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 28/323 (8%)
Query: 27 KNGDLA--RKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K G+LA R + K+ G V SL++ G+ + QLV ++ G D
Sbjct: 200 KEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVV 259
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T AL+ C+ G + A + + + +V S +DA+ + G E + + Q+
Sbjct: 260 TYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQM 319
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L Y+ I K G+L+ L EMV +G ++ T + + +
Sbjct: 320 RVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKV 379
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----------KERKFFMLGEFLRDVGLGR 249
E E +++K G+RA Y E+ +L E +++ GL
Sbjct: 380 AEAEDVL-------RMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSE-MKNKGL-- 429
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+L L+ L+ K+ + +M E+G P+ + A + +
Sbjct: 430 -ELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAI 488
Query: 310 LSLEHMKHESVGPDLVTYGCVVD 332
L+ + P+++TY ++D
Sbjct: 489 AMLQKILDSGFQPNVITYCALID 511
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 8/180 (4%)
Query: 27 KNGDLARKIIRYRKQEGF-VDCA---SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
KN + A ++ K +G +D + +L++ L K A L+ + GL P+
Sbjct: 412 KNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIY 471
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
+M +G V EA + +++L S F +V L+D + G +E IS +++
Sbjct: 472 TTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKM-- 529
Query: 143 RNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R+ L P V Y+ + K G L EMV +G S+D A + Y + G+L
Sbjct: 530 RDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNL 589
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 77/187 (41%)
Query: 26 PKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
P+ + +KI+ Q + +L++ L + A N ++ GL P+ AL
Sbjct: 485 PEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTAL 544
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ NG + EA ++ E++ L V + L+D Y + G ++ ++ ++
Sbjct: 545 VDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGL 604
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
L Y+ IS F + EM+ G + D A N I Y + G+L E +
Sbjct: 605 QLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAIS 664
Query: 206 AYGRLKR 212
++R
Sbjct: 665 LQDEMER 671
>gi|410110119|gb|AFV61139.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
javanica]
Length = 379
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 126/334 (37%), Gaps = 43/334 (12%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K+ GF V +++ G+ K A L+ +K+ G +P+ S+ L+ Y N
Sbjct: 17 KRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGXMPNTSSYSXLLTMYVENKKF 76
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--------------------------- 128
LEA V+ E+ +L + + ++D YG++G
Sbjct: 77 LEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 136
Query: 129 --------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
F E I + + +N + Y+ + +GK + E N ++EM SRG
Sbjct: 137 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGI 196
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+S + I + + G L + +L+ S ID+ + Y +
Sbjct: 197 EPNSIXYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTXIVAYERAGLVAHAKR 256
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L + L R D N+ + + AG +++ F + +AG D+T F S
Sbjct: 257 LLHE--LKRPD--NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLS 312
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ + M PD V++AY
Sbjct: 313 KYKKYXNVVEVFDKMXGXGYFPDSNVIAVVLNAY 346
>gi|326522967|dbj|BAJ88529.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 539
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 41/238 (17%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+YS+ IS G++GQ+ + +M + G D++ N+ I
Sbjct: 124 IYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLI------------------- 164
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
HL ++ +A+ LG F + G+ R + +N+LL + A
Sbjct: 165 --GAHLHSRDKSKAL---------VKALGYFDKMKGMERCQPNIVTYNILLRACARASDT 213
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
K + F + E+ PD+ T+N + + M ++ L MK + PD++T+ +
Sbjct: 214 KQVDILFKDLDESIVSPDIYTYNGVIDGYGKNGMITEMESVLVRMKSKQCRPDVITFNIL 273
Query: 331 VDAYLDKRLGRNLDFG------LSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+D+Y GR F S + + P T + +GK +E+ +E
Sbjct: 274 IDSY-----GRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGKARLREKAESVIE 326
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 23 QTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
QT K + + ++R +++ S++ + G+ + A ++ ++ G P+ T
Sbjct: 281 QTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGKARLREKAESVIEKMQELGFKPNYVTQ 340
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
L+ YA V +AQ +++EL+SS + + L+ ++DAY C N +
Sbjct: 341 ECLINMYAYCDCVSKAQQIFDELVSSQSTVPLSSLNAMLDAY----CMNRL 387
>gi|242091740|ref|XP_002436360.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
gi|241914583|gb|EER87727.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
Length = 999
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 11/265 (4%)
Query: 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ 139
S++ L+ A G EA+ ++++L F ++ L+ YG+ + + +
Sbjct: 609 SSVSLLISKLAREGSTDEAKFIYDQLTELGFKPDHTAIATLVVQYGQGKQLEQAQELFES 668
Query: 140 VSCRNADLLPE---VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
S L PE VY+ + F K G+ E + EMV +G + D+ T + + + ++
Sbjct: 669 ASA----LFPEGANVYNAMVDAFCKCGKTEDAYHLFMEMVDQGSNRDAVTVSILVTHLTK 724
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE-FLRDVGLGRKDLGNL 255
G L + Y R+ S + + + K K E F LG +
Sbjct: 725 HGKLHSAISIYDRMISSGTSQSMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPIDEKM 784
Query: 256 LWNLL-LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
N+L L AG + SL F RM E G P +FN A++ + + +
Sbjct: 785 YTNMLSLYGKAGRHQEASLM--FKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHE 842
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRL 339
M+ PD +Y ++ AY + +L
Sbjct: 843 MQDCGHAPDSFSYLALIRAYTEAKL 867
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/300 (19%), Positives = 129/300 (43%), Gaps = 15/300 (5%)
Query: 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102
G + L+ L R+ A + + + G PD++ + L++ Y + +AQ ++
Sbjct: 607 GLSSVSLLISKLAREGSTDEAKFIYDQLTELGFKPDHTAIATLVVQYGQGKQLEQAQELF 666
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIG----CFNEIISIIDQVSCRNADLLPEVYSRAISC 158
E S+ F V + ++DA+ + G ++ + ++DQ S R+A + S ++
Sbjct: 667 ESA-SALFPEGANVYNAMVDAFCKCGKTEDAYHLFMEMVDQGSNRDAVTV----SILVTH 721
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
K G+L + M+S G S T N I + + G L + + + ID
Sbjct: 722 LTKHGKLHSAISIYDRMISSGTSQSMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPID 781
Query: 219 KEGIRAVSFTYLK---ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
++ + Y K ++ ++ + +++ G+ G + +N ++ +YA + +
Sbjct: 782 EKMYTNMLSLYGKAGRHQEASLMFKRMKEDGIRP---GKISFNSMINAYATSGLCSEAKS 838
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
F M + G PD ++ A++ ++ + ++ M + S P + ++ A+L
Sbjct: 839 TFHEMQDCGHAPDSFSYLALIRAYTEAKLYMEAEEAIRMMLNSSTTPSCPHFSHLIFAFL 898
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/242 (18%), Positives = 102/242 (42%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V+ + K A+ L + +G D T+ L+ +G + A +++ ++SS
Sbjct: 682 AMVDAFCKCGKTEDAYHLFMEMVDQGSNRDAVTVSILVTHLTKHGKLHSAISIYDRMISS 741
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
S+Q + ++ +G+ G ++ + + + ++Y+ +S +GK G+ +
Sbjct: 742 GTSQSMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEA 801
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
K M G + N+ I Y+ G +E ++ + ++ H D A+
Sbjct: 802 SLMFKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQDCGHAPDSFSYLALIRA 861
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y + + + E +R + ++ L+ ++ ++ QR + +M EA PD
Sbjct: 862 YTEAKLYMEAEEAIRMMLNSSTTPSCPHFSHLIFAFLKEGQIGEAQRIYNQMKEASVAPD 921
Query: 289 LT 290
L
Sbjct: 922 LA 923
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/244 (18%), Positives = 96/244 (39%), Gaps = 5/244 (2%)
Query: 28 NGDLARKIIRYRKQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC 83
G+ A ++ K +G V CASL+ + + A L++ +++ ++PD
Sbjct: 329 KGEQALRLFEEMKAQGIVPSNYTCASLLALYYKNEDYSKALSLLSEMENSKVIPDEVIYG 388
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
L+ Y G EA+ +E++ + + Q + + G ++ + +++ + R
Sbjct: 389 ILIRIYGKLGLYEEAEQTFEKIEKAGLLSDEQTYVAMAQVHLNAGDYDRALEVLESMMMR 448
Query: 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
N YS + C+ + + E+T + + G D N + Y R G L +
Sbjct: 449 NVKPSHFSYSAILRCYVAKEDIVAAEDTFRALSQHGLP-DVFCCNDLLRLYMRLGHLEKA 507
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLS 263
+++ +D++ V Y K + +D+ K + LL+
Sbjct: 508 RALVLKMREDDFRLDEDLSMTVMKFYCKSNMINDAEKIFKDIQRNNKTVKIPTMLLLIEM 567
Query: 264 YAGN 267
YA N
Sbjct: 568 YARN 571
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 12/185 (6%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
Y+ + +GK G+++L E T EM+ G D+ + Y+R+G +M Y +
Sbjct: 176 AYTILLRLYGKVGKIKLAEETFLEMLQVGCEPDAVACGTLLCMYARWGRHKDMMLFYSAV 235
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKF----FMLGEFLRDVGLGRKDLGN-LLWNLLLLSYA 265
+R R L+ + + L+++K + + +R+ G L N + +++ S+
Sbjct: 236 RR-RDLVPPVSVYNYMISSLQKQKLHGKVIHVWKQMREAGA----LPNQFTYTVVISSFV 290
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
++ F M + F P+ T+++ A SR E MK + + P
Sbjct: 291 KEDLLEKAMDVFGEMRQCRFVPEEATYSLLISASSRHGKGEQALRLFEEMKAQGIVPS-- 348
Query: 326 TYGCV 330
Y C
Sbjct: 349 NYTCA 353
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 105/264 (39%), Gaps = 2/264 (0%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL P+ T L+ G + E + +E+ S V S L D R G +
Sbjct: 128 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 187
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+S+ + + S ++ K G++ + E L+ +V+ G N I
Sbjct: 188 LSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLING 247
Query: 194 YSRFGSLTEMETAYGRLKRSRHL-IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
Y + G L + +G++K SRH+ D A+ K + + L ++ +
Sbjct: 248 YCQTGELEGAFSTFGQMK-SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNP 306
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+N L+ +Y +++ M E G P++ ++ AF + + L
Sbjct: 307 TVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAIL 366
Query: 313 EHMKHESVGPDLVTYGCVVDAYLD 336
+ M H+ V P+ Y ++DAY++
Sbjct: 367 DDMFHKDVLPNAQVYNAIIDAYVE 390
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 9/184 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L + ++ A L+ ++ G+ P T L+ Y G + + +V E+ +
Sbjct: 278 ALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQEN 337
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQGQLE 166
+V +++A+ + G E ++I+D + + D+LP +VY+ I + + G +
Sbjct: 338 GLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK--DVLPNAQVYNAIIDAYVEHGPND 395
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++M S G S T N I ++E E L R + D AVS
Sbjct: 396 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPD-----AVS 450
Query: 227 FTYL 230
+ L
Sbjct: 451 YNTL 454
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 70 VKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
+KS + PD+ T AL+ LC A + AQ + E+ + +V+ + L+DAYGR
Sbjct: 264 MKSRHIKPDHITYNALINGLCKAER--ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRT 321
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
G + ++ ++ + L P V Y ++ F K G++ L +M + ++
Sbjct: 322 GQLEKCFIVLSEM--QENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQ 379
Query: 186 TGNAFIIYYSRFG 198
NA I Y G
Sbjct: 380 VYNAIIDAYVEHG 392
>gi|449433119|ref|XP_004134345.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g01970-like [Cucumis sativus]
gi|449480346|ref|XP_004155867.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g01970-like [Cucumis sativus]
Length = 404
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 3/196 (1%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y++ I +GKQ QLE E L M RGF D T I YS+ L + + LK
Sbjct: 164 YTKIIHHYGKQNQLEDAEKVLLSMRERGFVCDQITLTTMIHIYSKADKLNLAKQTFEELK 223
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGE-FLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+DK A+ Y++ F GE L+++ G+ ++ LL +Y+
Sbjct: 224 LLEQPLDKRSFGAMIMAYVRA-GFPEEGEKILKEMDAKDIYAGSEVYKALLRAYSMVGNA 282
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ QR F + A PD + A+ + ++ ++M+ + P
Sbjct: 283 EGAQRVFDAIQLAAITPDEKLCGLLINAYLMAGQSREAQIAFDNMRRAGIEPSDKCIALA 342
Query: 331 VDAY-LDKRLGRNLDF 345
+ AY + RL L+
Sbjct: 343 LSAYEKENRLNSALEL 358
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 105/264 (39%), Gaps = 2/264 (0%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL P+ T L+ G + E + +E+ S V S L D R G +
Sbjct: 265 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAM 324
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+S+ + + S ++ K G++ + E L+ +V+ G N I
Sbjct: 325 LSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLING 384
Query: 194 YSRFGSLTEMETAYGRLKRSRHL-IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252
Y + G L + +G++K SRH+ D A+ K + + L ++ +
Sbjct: 385 YCQTGELEGAFSTFGQMK-SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNP 443
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+N L+ +Y +++ M E G P++ ++ AF + + L
Sbjct: 444 TVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAIL 503
Query: 313 EHMKHESVGPDLVTYGCVVDAYLD 336
+ M H+ V P+ Y ++DAY++
Sbjct: 504 DDMFHKDVLPNAQVYNAIIDAYVE 527
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 70 VKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
+KS + PD+ T AL+ LC A + AQ + E+ + +V+ + L+DAYGR
Sbjct: 401 MKSRHIKPDHITYNALINGLCKAER--ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRT 458
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
G + ++ ++ + L P V Y ++ F K G++ L +M + ++
Sbjct: 459 GQLEKCFIVLSEM--QENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQ 516
Query: 186 TGNAFIIYYSRFG 198
NA I Y G
Sbjct: 517 VYNAIIDAYVEHG 529
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 9/184 (4%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L + ++ A L+ ++ G+ P T L+ Y G + + +V E+ +
Sbjct: 415 ALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQEN 474
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGKQGQLE 166
+V +++A+ + G E ++I+D + + D+LP +VY+ I + + G +
Sbjct: 475 GLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMF--HKDVLPNAQVYNAIIDAYVEHGPND 532
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++M S G S T N I ++E E L R + D AVS
Sbjct: 533 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPD-----AVS 587
Query: 227 FTYL 230
+ L
Sbjct: 588 YNTL 591
>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 856
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 128/311 (41%), Gaps = 23/311 (7%)
Query: 39 RKQEGFV----DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
++Q GF +++ LG+ K+ +L++ + S P T ++ Y +
Sbjct: 354 KRQPGFKHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANY 413
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--Y 152
+ EA V+EE+ + + L+D + + G + + ++ + L P+ Y
Sbjct: 414 LREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRM--QEVGLSPDTFTY 471
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
S ++C GK GQL EM+ G + + T N I ++ + + Y ++
Sbjct: 472 SAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQI 531
Query: 213 SRHLIDKEGIRAV-----SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
+ DK V +L E + L E RD G L + L AGN
Sbjct: 532 AGFRPDKITYSIVMEVLGHCGHLDEAEAVFL-EMRRDWAPDEPVYGLL---VDLWGKAGN 587
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
K+L + M + G P++ T N AF +++ F D + L++M + + P L TY
Sbjct: 588 VD-KALGW-YHAMLQDGLQPNVPTCNSLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTY 645
Query: 328 ----GCVVDAY 334
C DA+
Sbjct: 646 TLLLSCCTDAH 656
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 126/313 (40%), Gaps = 46/313 (14%)
Query: 27 KNGDLARKIIRYRKQEGFV-DCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
+N D A+ ++ GFV D + L + L ++ + A +LV + G P+ T
Sbjct: 94 QNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTY 153
Query: 83 CALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
L+ LC A+ +A + E L+SS FV V + ++D + G ++ + +++ +
Sbjct: 154 NTLIDGLCKASK--TEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM 211
Query: 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R Y+ + + G+++ + KEMVS+ + D+ + + Y +
Sbjct: 212 LKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCK---- 267
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
R K ++ ++D GIR + DV +N L
Sbjct: 268 ------SSRTKEAQKVVD--GIRGTPYI---------------DV-----------YNAL 293
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
+ Y ++ + F M+ G P++ T+NI + + LE M
Sbjct: 294 MDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGC 353
Query: 321 GPDLVTYGCVVDA 333
PD+V+Y ++D
Sbjct: 354 VPDVVSYNIIIDG 366
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 112/282 (39%), Gaps = 38/282 (13%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V+ L ++ + A ++V + G P T ALM G V EA +++E++S
Sbjct: 191 IVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKD 250
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
L++ Y + E ++D + R + +VY+ + + K+G+L+ +
Sbjct: 251 CTADALAYVSLVNGYCKSSRTKEAQKVVDGI--RGTPYI-DVYNALMDGYCKEGRLDEIP 307
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
N ++M RG + T N + + G + E +F +
Sbjct: 308 NVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE-----------------------AFPF 344
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
L+ + DV + +N+++ K K ++ +M +AG PD
Sbjct: 345 LES---MHSAGCVPDV---------VSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDA 392
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
T+N F + F D L++M V PD VTY ++
Sbjct: 393 VTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLI 434
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 119/298 (39%), Gaps = 28/298 (9%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+L+E L R + AH + + S+ D +L+ Y + EAQ V + +
Sbjct: 224 TALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG 283
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ ++ V + LMD Y + G +EI ++ + ++CR + Y+ + K G+++
Sbjct: 284 TPYI---DVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE 340
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIRA 224
L+ M S G D + N II F + + K +R ++D+ GI
Sbjct: 341 AFPFLESMHSAGCVPDVVSYN--IIIDGLFKA--------SKPKEARQVLDQMIQAGIPP 390
Query: 225 VSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS---LQ 274
+ TY KE +F L+++ D N+ +N L+ + ++ L
Sbjct: 391 DAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELM 450
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
E +R TT+N + L ++HM V + VTY +D
Sbjct: 451 HEMLR--NGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFID 506
>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
Length = 794
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 131/331 (39%), Gaps = 55/331 (16%)
Query: 17 FNVPSHQTHPKNGDLARKIIRYRKQEGF------VDCASLVEDLGRKKKPHLAHQLVNTV 70
FN+ H TH G LA + +GF V +L++ RK A L+ +
Sbjct: 213 FNLLVH-THCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARM 271
Query: 71 KSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
K EG+ P +T L+ YA G++ +A V E + + F + + L + G
Sbjct: 272 KKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 331
Query: 131 NEIISIIDQ---VSCRNADLLPEVYSRAI-SCFGKQGQLELMENTLKEMVSRGFSVDSAT 186
+E + D+ +S + D++ Y+ + +CF Q + + N L+EM +G T
Sbjct: 332 DEAFKLKDEMEHLSIVSPDVV--TYNTLVDACFKYQRSSDAL-NLLEEMRDKGVKSSLVT 388
Query: 187 GNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVG 246
N + R G ++E A GRLK ++ +EG+ TY
Sbjct: 389 HNIVVKGLCREG---QLEEALGRLK----MMTEEGLAPDVITY----------------- 424
Query: 247 LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE---AGFHPDLTTFNIRAVAFSRMS 303
N L+ +Y K +++ + F+ M E +G D T N +
Sbjct: 425 -----------NTLIDAYC---KARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEK 470
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + L PD V+YG V+ AY
Sbjct: 471 RYEEAEELLRSPPQRGFVPDEVSYGTVMAAY 501
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+NLL+ ++ + M G PD+ T+N A R M + L MK
Sbjct: 213 FNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMK 272
Query: 317 HESVGPDLVTYGCVVDAYLDKRLG 340
E + P TY +V AY RLG
Sbjct: 273 KEGIAPTRATYNTLVSAY--ARLG 294
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ +L ++K+ A +L+ + G +PD + +M Y A +W+E+
Sbjct: 461 TLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKR 520
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
S+ + L+ IG E I ++++ + L+P+ Y+ I + K+G LE
Sbjct: 521 KLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKG--LVPDDTTYNIIIHAYCKEGDLE 578
Query: 167 LMENTLKEMVSRGFSVDSATGNAFI 191
+M+ F D T N +
Sbjct: 579 KAFQFHNKMLENYFKPDVVTCNTLM 603
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 65/153 (42%)
Query: 67 VNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126
+N + +GL+PD++T ++ Y G + +A ++L + F V + LM+
Sbjct: 549 LNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCL 608
Query: 127 IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSAT 186
G + I + + + + + Y+ I K G ++ + +M +RG D+ T
Sbjct: 609 HGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFT 668
Query: 187 GNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
N + S G E + +L S L ++
Sbjct: 669 YNVVLSALSEAGRSEEAQNMLHKLDESGKLSER 701
>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 10/172 (5%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ L K LA + + + GLLPD+ST +++L Y G V +A + E +
Sbjct: 526 SLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKH 585
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ-VSCRNADLLPEVYSRAISCFGKQGQLEL 167
SF + L++ + G + ++ + + R D + Y+ IS F K +L+
Sbjct: 586 SFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVDTV--TYNTMISAFCKDKKLKE 643
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET-------AYGRLKR 212
+ L EM +G D T N+FI G L+E + +G +KR
Sbjct: 644 AYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFGSMKR 695
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 114/277 (41%), Gaps = 50/277 (18%)
Query: 27 KNGDL--ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K GDL A +++R Q+G + ++++ L +++K AH L+N+ G + D
Sbjct: 428 KVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEV 487
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T L++ + V +A +W+E+ +V + L+ G + D++
Sbjct: 488 TYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDEL 547
Query: 141 SCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+ + LLP+ ++ I + K+G++E E + F D+ T N + + G
Sbjct: 548 A--ESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEG 605
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSF--TYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
+TE +A++F T ++ER ++ +
Sbjct: 606 -MTE--------------------KALNFFNTLIEER-----------------EVDTVT 627
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+N ++ ++ + K+K M E G PD T+N
Sbjct: 628 YNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYN 664
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 34/160 (21%)
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
+MV G S++ T N + Y G L E A G L+R
Sbjct: 194 DMVKIGVSLNVQTFNVLVNGYCLEGKL---EDALGMLER--------------------- 229
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
M+ EF + + N+ +N +L + + ++ L+ + M + G P+ T+N
Sbjct: 230 ---MVSEF-------KVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYN 279
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ ++ + +E MK +V PDL TY +++
Sbjct: 280 NLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILING 319
>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 680
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 128/312 (41%), Gaps = 8/312 (2%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL +++ R V ++L+ K A L N + SE + PD T L+ +
Sbjct: 231 DLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAF 290
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
G V EA+ ++ + + LMD Y + N SI++ +S R
Sbjct: 291 CKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATV 350
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG----SLTEMET 205
Y+ I+ F K ++ KEM + + T N+ I + G +L ++
Sbjct: 351 RSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDL 410
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+ R ++ + + A+ +L ++ +L + L+D G+ R ++ + +L+
Sbjct: 411 MHDRGQQPDIITYSSILDALCKNHLVDKAIALLIK-LKDQGI-RPNM--YTYTILIDGLC 466
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+++ + F + G++ + T+ + F +F + L MK S PD +
Sbjct: 467 KGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAI 526
Query: 326 TYGCVVDAYLDK 337
TY ++ + DK
Sbjct: 527 TYEIIICSLFDK 538
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 40 KQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQ 99
+Q + +S+++ L + A L+ +K +G+ P+ T L+ G + +A+
Sbjct: 416 QQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDAR 475
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAIS 157
++E+LL + L+V + ++ + G F+E +S++ ++ ++ +P+ Y I
Sbjct: 476 NIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKM--KDNSCIPDAITYEIIIC 533
Query: 158 CFGKQGQLELMENTLKEMVSRGF 180
+ + + E L+EM++RG
Sbjct: 534 SLFDKDENDKAEKLLREMITRGL 556
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 66/336 (19%), Positives = 130/336 (38%), Gaps = 22/336 (6%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G PD TL + + G + +A ++L++ F L L++ ++G
Sbjct: 135 GYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAA 194
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ ++ +V + L +YS I K + + EMVSR S + T +A I
Sbjct: 195 LELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISG 254
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK--- 250
+ G L + + ++ D + + KE + + E + + K
Sbjct: 255 FCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGR---VKEAKNGLAMMMKQGI 311
Query: 251 --DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
D+ + +N L+ Y ++ + MS G + ++NI F ++ M
Sbjct: 312 KPDI--VTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQA 369
Query: 309 HLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNL----DDSPVVSTDPYV 364
+ M H+ + P+++TY ++D + GR + + L ++L P + T +
Sbjct: 370 MKLFKEMHHKQIFPNVITYNSLIDGLC--KSGR-ISYALELIDLMHDRGQQPDIITYSSI 426
Query: 365 FEAFGKGDFHSSSEAFL-----EFKRQRKWTYRKLI 395
+A K + A L + R +TY LI
Sbjct: 427 LDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILI 462
>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 625
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 104/260 (40%), Gaps = 22/260 (8%)
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L++ YAN EA V+E ++ + F + + L+++ + + + + +++
Sbjct: 136 LVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIG 195
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
+ VY+ I K G +E +N L EM S+ D T N I Y + G E
Sbjct: 196 VEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEAL 255
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTY-------LKE---RKFFMLGEFLRDVGLGRKDLGN 254
+ R++R EGI+ TY KE R+ L + +RD +
Sbjct: 256 SVQDRMER-------EGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDAT-----PNH 303
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ + L+ Y + R M G +P + T+N + D + L
Sbjct: 304 VTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNE 363
Query: 315 MKHESVGPDLVTYGCVVDAY 334
M + + PD VT +++AY
Sbjct: 364 MSEKKIEPDNVTCNTLINAY 383
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 116/301 (38%), Gaps = 20/301 (6%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C L+ L + + + ++ + G+ + L+ +G V +A + E+
Sbjct: 168 CTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEME 227
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
S + + L+ Y + G E +S+ D++ + P++ Y+ I F K+G+
Sbjct: 228 SKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRM--EREGIKPDIVTYNSLIHGFCKEGR 285
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ KE+ R + + T I Y R L + R R ++ +G+
Sbjct: 286 MREAMRLFKEI--RDATPNHVTYTTLIDGYCRLNDLDQA-------LRLREEMEAQGLYP 336
Query: 225 VSFTYLKE-RKFFMLG------EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277
TY RK +G + L ++ + + N+ N L+ +Y MKS +
Sbjct: 337 TVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVK 396
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
RM EAG D T+ F ++ L M P TY +VD Y ++
Sbjct: 397 NRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQ 456
Query: 338 R 338
+
Sbjct: 457 Q 457
>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
Length = 1095
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/279 (19%), Positives = 108/279 (38%), Gaps = 35/279 (12%)
Query: 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
K +LA + N + + L P +T AL+ Y NG EA+ V E+ + S S
Sbjct: 349 KINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYS 408
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L++ Y + + +I + R+ + +Y+ I F + G++ + LK M++
Sbjct: 409 ALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLAD 468
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
G D T +A I + G + E + R+++S L +
Sbjct: 469 GIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPN-------------------- 508
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
N+L+ L+ + K + F+ + +G + N +
Sbjct: 509 ---------------NVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCS 553
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
F R M + ++M + D+ ++ C++D+Y +
Sbjct: 554 FYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQR 592
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 57/284 (20%), Positives = 114/284 (40%), Gaps = 18/284 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A Q++ + ++G+ PD T AL+ G + E + + + S + + + + L+
Sbjct: 458 AKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVF 517
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC-FGKQGQLELMENTLKEMVSRGFS 181
+ + G E + + R+ + V A+ C F ++G + E + M S
Sbjct: 518 YFCKAGHAKEALKYFVDIY-RSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKIS 576
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID----KEGIRAVS-FTYLKERKFF 236
D A+ N I Y + G++ E + Y + R D +R + +L + K F
Sbjct: 577 FDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEF 636
Query: 237 MLGEFLRDVGLGRKDLGNLLWNLL---LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
M+ + + K L LL + L A + K + R + PD T+
Sbjct: 637 MVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNIL--------PDTYTYT 688
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
I F + + L+ M + + PD + Y C+++ +++
Sbjct: 689 ILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNE 732
>gi|215704820|dbj|BAG94848.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766880|dbj|BAG99108.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 389
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI---I 134
D + + ++ A G + + +++EEL L V + ++D G+ G +++ +
Sbjct: 197 DPTVMNRIVFTTAKYGQIDKCLIIFEELKKDQRGLDVVTFNTILDMLGKAGRVDQMLQEV 256
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
++D++ + D++ Y+ I+C + G+L+ + +EMV RG D T A I +
Sbjct: 257 KLMDELG-HSPDIV--TYNTVINCLRRLGRLDQCKIFAREMVERGIDPDLRTYTALIDIF 313
Query: 195 SRFGSLTEMETAYGRLKRSRH 215
R G +TE + ++KRS
Sbjct: 314 GRAGHITEALEMFDQMKRSHQ 334
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++++ LG+ + Q V + G PD T ++ C G + + ++ E++
Sbjct: 238 TILDMLGKAGRVDQMLQEVKLMDELGHSPDIVTYNTVINCLRRLGRLDQCKIFAREMVER 297
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++ + L+D +GR G E + + DQ+ R+ VY IS K GQ EL
Sbjct: 298 GIDPDLRTYTALIDIFGRAGHITEALEMFDQMK-RSHQPSIYVYRALISDLKKAGQFELA 356
Query: 169 ENTLKEM 175
+ +EM
Sbjct: 357 QKLSEEM 363
>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
Length = 630
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/307 (19%), Positives = 122/307 (39%), Gaps = 15/307 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+N ++ + + T ALM G + A ++ + +++ + +V + L+D
Sbjct: 87 AMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLVD 146
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
YG++G + I ++D + + + Y+ I Q + ++S G++
Sbjct: 147 VYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTP 206
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRS---RHLIDKEG-IRAVSFTYLKERKFFML 238
+S T NA I Y + L + Y + R R +I I A E +
Sbjct: 207 NSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIF 266
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
E +D + + +N L+ + A + + F +M+ G PD+ T+ A
Sbjct: 267 NEMQQDNCVP----NTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISA 322
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL----GRNLDFGLSKM---N 351
+ R + + M + PD + Y ++D + + GR L L+ + +
Sbjct: 323 YERGGQWQKALQAFGKMCMQGCKPDAIVYNAIIDTLWETGIIWAQGRALQLFLTAVQQGH 382
Query: 352 LDDSPVV 358
PVV
Sbjct: 383 FRQEPVV 389
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%)
Query: 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
+P A + + S+G P+++T AL+ Y + +A V++E+L + SV S
Sbjct: 188 QPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYS 247
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+ A + G + + I +++ N Y+ ++ + GQ E ++M +
Sbjct: 248 SLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAH 307
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
G + D T A I Y R G + A+G++
Sbjct: 308 GCTPDVVTYTALISAYERGGQWQKALQAFGKM 339
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 121/318 (38%), Gaps = 14/318 (4%)
Query: 27 KNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC--- 83
+N +L I R A L++DL R K A +L + ++S LC
Sbjct: 10 QNEELPEVIFRALHHVDSRAVALLLKDLSRLGKDRRAMELFDWLRSANERSPLRQLCDVY 69
Query: 84 ----ALMLC-YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
+ LC Y+ + V A + E+ + +V + LM+ + G + I +
Sbjct: 70 SYTATISLCIYSQD--VDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYN 127
Query: 139 QVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ R A+ +P V Y+ + +GK G+ E + L M G T N II +
Sbjct: 128 NM--RAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNM 185
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
E Y RL + + A+ Y K + E +++ + +
Sbjct: 186 CNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVIT 245
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
++ L+ + + ++ R F M + P+ T+N A ++ + E M
Sbjct: 246 YSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMT 305
Query: 317 HESVGPDLVTYGCVVDAY 334
PD+VTY ++ AY
Sbjct: 306 AHGCTPDVVTYTALISAY 323
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/282 (18%), Positives = 117/282 (41%), Gaps = 14/282 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ +G +PD T C+L+ G V A ++ E + + V + L+
Sbjct: 312 ATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVK 371
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G + ++++++ + Y+ I+ K G + + + + +G+
Sbjct: 372 GLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLP 431
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKF 235
D T N I Y + ++++A ++R + + GI + TY K K
Sbjct: 432 DVFTFNTLIDGYCK---RLKLDSALQLVER----MWEYGIAPDTITYNSVLNGLCKAGKV 484
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
+ E +++ L + +N+L+ ++ + KM+ + ++MS+ G HPD +FN
Sbjct: 485 NEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL 544
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
F R +L + ++ + T+ ++ A+ K
Sbjct: 545 IYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGK 586
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/289 (18%), Positives = 116/289 (40%), Gaps = 8/289 (2%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C L+ R K + + G P T ++ C G + A ++EE+
Sbjct: 101 CNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMK 160
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + ++D YG++G ++ + +++ + + Y+ I+CF K G+L
Sbjct: 161 FRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLP 220
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+EM G + + + + + + + + Y ++R + ++ ++
Sbjct: 221 KGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLV 280
Query: 227 FTYLKERKF---FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
Y K F L + + VG+ + + + L+ ++K + F +M A
Sbjct: 281 DAYCKIGNLSDAFRLADEMSQVGV---EWNVVTYTALIDGLCDVERIKEAEELFGKMVTA 337
Query: 284 GFHPDLTTFNIRAVAFSRM-SMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
G P+L ++ F + +M L L L+ MK + PDL+ YG +
Sbjct: 338 GVIPNLASYTALIHGFVKAKNMDRALEL-LDEMKGRGIKPDLLLYGTFI 385
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 80/202 (39%), Gaps = 8/202 (3%)
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD-VGLGRKDLGNLLWNLLLLSY 264
+ ++KR R + + + K + F +D +G G K +N+++
Sbjct: 85 CFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPT-VFTYNIMIDCM 143
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
+++ F M G PD T+N + ++ D E MK S PD+
Sbjct: 144 CKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDV 203
Query: 325 VTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAF-LE 382
+TY +++ + +L + L+F P V + + +AF K D + F ++
Sbjct: 204 ITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVD 263
Query: 383 FKR----QRKWTYRKLIAVYLK 400
+R + TY L+ Y K
Sbjct: 264 MRRLGLVPNEHTYTSLVDAYCK 285
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 113/261 (43%), Gaps = 19/261 (7%)
Query: 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143
A++ Y+ +G + +A++V++ + + V + ++D Y R G + + + D++ R
Sbjct: 99 AILGMYSKSGHLRKARLVFDYIEDKNSV----TWNTMIDGYMRNGQVDNAVDVFDKMPDR 154
Query: 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
DL+ ++ I+ F K+G E +EM G + D ++ S + T +
Sbjct: 155 --DLIS--WTAMITGFVKKGFHEEALAWFREMQISGVNPD------YVAIISAVAACTNL 204
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG--EFLRDVGLGRKDLGNLLWNLLL 261
L R+++ ++ V + + G EF R V + + WN ++
Sbjct: 205 GALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVI 264
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE-SV 320
+ +A N F +M GF PD TF A S + + + + MKH+ +
Sbjct: 265 VGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRI 324
Query: 321 GPDLVTYGCVVDAYLDKRLGR 341
P + YGC+VD Y R GR
Sbjct: 325 SPRIEHYGCLVDLY--SRAGR 343
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 112/293 (38%), Gaps = 42/293 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVL---------EAQVVWEELLSSSFVLS 113
A ++ T+K + L PD CY N F+ EA V +LL S V +
Sbjct: 271 ASKIFKTMKDKNLKPD---------CYTYNSFISRLCKERRIEEASGVLCKLLESGLVPN 321
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173
+ L+D G ++ + D++ R Y+ I + ++E E+ +K
Sbjct: 322 AVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIK 381
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID---KEGIRAVSFTYL 230
EM +G D T N I Y R G+ K++ L D ++ IR TY
Sbjct: 382 EMREKGVEPDVVTYNIQINGYCRCGN----------AKKALSLFDEMVEKNIRPTVETYT 431
Query: 231 --------KERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ R +F + + G D+ +++N L+ + N + + M
Sbjct: 432 SLIDVFGKRNRMSEAEEKFKKSIKEGMLPDI--IMFNALIDGHCVNGNIDRAFQLLKEMD 489
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
A PD TFN + R + L+ MK + PD ++Y ++ Y
Sbjct: 490 NAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGY 542
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 119/284 (41%), Gaps = 14/284 (4%)
Query: 58 KKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVL 117
+KP A + +N +K ++P T +L+ + A V+EE++ + S+
Sbjct: 161 RKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTF 220
Query: 118 SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177
+ +++ R G + + I + Y+ I+ + +G+ E K M
Sbjct: 221 NIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKD 280
Query: 178 RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI--RAVSFTYLKE--- 232
+ D T N+FI SR +E A G L + + + G+ AV++ L +
Sbjct: 281 KNLKPDCYTYNSFI---SRLCKERRIEEASGVLCK----LLESGLVPNAVTYNALIDGCC 333
Query: 233 RKFFMLGEFL-RDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
K + F RD + R + ++ +NLL+ + +++ + M E G PD+
Sbjct: 334 NKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVV 393
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
T+NI+ + R + M +++ P + TY ++D +
Sbjct: 394 TYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVF 437
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 71/350 (20%), Positives = 139/350 (39%), Gaps = 9/350 (2%)
Query: 30 DLARKIIRYRKQEGF-VDC---ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
+ A KI + K + DC S + L ++++ A ++ + GL+P+ T AL
Sbjct: 269 EAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNAL 328
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ N G + +A +E+++ V SV + L+ A E +I ++ R
Sbjct: 329 IDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEM--REK 386
Query: 146 DLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
+ P+V Y+ I+ + + G + + EMV + T + I + + ++E
Sbjct: 387 GVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEA 446
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLS 263
E + + + L D A+ + + L+++ + + +N L+
Sbjct: 447 EEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQG 506
Query: 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
Y K++ ++ M E G PD ++N +S+ D + M P
Sbjct: 507 YCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPT 566
Query: 324 LVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFGKGD 372
L+TY ++ Y + + L +M +P ST YV EA D
Sbjct: 567 LLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTND 616
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 141/334 (42%), Gaps = 40/334 (11%)
Query: 24 THPKNGDL--ARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLP 77
H K G++ A++++ ++G V ++ L R + A +L ++ +GL+P
Sbjct: 224 AHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVP 283
Query: 78 DNSTLCALMLCYANNGFVLE-----AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
D T L+ NGF +E A+++ E++ + L+D + R G +
Sbjct: 284 DLYTYDILI-----NGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQ 338
Query: 133 IISIIDQ-VSCR-NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
I D+ V+C A+L+ +++ ++ K G++E ++EM+ +G DS T +
Sbjct: 339 AFRIKDEMVACGIEANLI--IWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLL 396
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM----------LGE 240
I + R ++ R+ L+D+ R ++ T L
Sbjct: 397 IEGHCRGQNMA----------RAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNA 446
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
LR++ + +++ L+ ++A +++ + RM E G PD+ +N + F
Sbjct: 447 ILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFC 506
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + L M + P+ TYG +D Y
Sbjct: 507 KAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGY 540
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 106/270 (39%), Gaps = 10/270 (3%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
GL P+ LM +A G V E++++ E + + V + L+ + + E
Sbjct: 455 GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEA 514
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ + ++ R Y I + K G++E+ + EM+S G + A I
Sbjct: 515 RTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEG 574
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKEG----IRAVSFTYLKERKFFMLGEFLRDVGLGR 249
+ + G++TE + + + R L D + I +S F + E L++ GL
Sbjct: 575 HCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSE-LQEKGL-- 631
Query: 250 KDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308
L N +N L+ + + M G +PD+ T+NI +
Sbjct: 632 --LPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERA 689
Query: 309 HLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+ ++ + P+ VTY +VD Y +
Sbjct: 690 KNLFDDIEGRGLTPNCVTYAAMVDGYCKSK 719
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 64/323 (19%), Positives = 120/323 (37%), Gaps = 17/323 (5%)
Query: 23 QTHPKNGDLA------RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+ H K G++ R I+ R + + L+ L R K H A + + ++ +GLL
Sbjct: 573 EGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLL 632
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P+ T +L+ G V +A + EE+ + + L+D + G ++
Sbjct: 633 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNL 692
Query: 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
D + R Y+ + + K L+EM+ RG D+ IY
Sbjct: 693 FDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDA------FIYNVI 746
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT-----YLKERKFFMLGEFLRDVGLGRKD 251
+ E L + +++K VSF Y K K L ++ +
Sbjct: 747 LNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFI 806
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
++ + L+ M +R ++ M E P T+ + + ++
Sbjct: 807 PNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSAL 866
Query: 312 LEHMKHESVGPDLVTYGCVVDAY 334
E M + + PD +TY ++DAY
Sbjct: 867 FEEMVAKGIEPDKMTYYVMIDAY 889
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 65/158 (41%)
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
Y +G + EA + EE++ F+ + + L+D + G E + ++ RN
Sbjct: 784 YCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPT 843
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
+ Y+ + + G + + +EMV++G D T I Y R G++ E
Sbjct: 844 AKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKD 903
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVG 246
+ + A+ K+ +FF + + L ++G
Sbjct: 904 EILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIG 941
>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1136
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 21/343 (6%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
T+S ++G K RF ++ +I R + ++L+ + R
Sbjct: 480 TYSALINGFCKVGRFKTAK--------EIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKE 531
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + EG D+ T L+ G V EA+ + S + + L++
Sbjct: 532 AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLIN 591
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
YG G + S+ D+++ Y + K G L E LK + + +V
Sbjct: 592 GYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAV 651
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ N + + G+L + + +G + + L D ++ ++ K + F
Sbjct: 652 DTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFA 711
Query: 243 RDVGLGRKDLGNLLWNLLLLSY-------AGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
++ + GN+L N ++ + AG +K RE +M G PD+ T N
Sbjct: 712 KEA----EARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFRE--QMDNLGHTPDIVTTNAM 765
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+SRM + L M +++ GP+L TY ++ Y ++
Sbjct: 766 IDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRK 808
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 54/288 (18%), Positives = 106/288 (36%), Gaps = 6/288 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ DL R + + L+ ++ + P+ T L+ ++N G VL A + E+LS
Sbjct: 309 LIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFG 368
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+D + G F E + + + + Y + K + +L
Sbjct: 369 LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLAR 428
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
M G V T I + G L E + + D A+ +
Sbjct: 429 GFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGF 488
Query: 230 LKERKFFMLGEF---LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K +F E + VGL ++++ L+ + +K R + M G
Sbjct: 489 CKVGRFKTAKEIVCRIYRVGLSPN---GIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHT 545
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D TFN+ + + + + M + + P+ V++ C+++ Y
Sbjct: 546 RDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGY 593
>gi|297792331|ref|XP_002864050.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
gi|297309885|gb|EFH40309.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
Length = 723
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 132/340 (38%), Gaps = 55/340 (16%)
Query: 45 VDCASLVEDL---GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVV 101
V CA ++ + GR K ++ + +G+ L+ + + G EA V+
Sbjct: 309 VTCAIMITTMRKAGRSAKE--VWEIFEKMSDKGVKWSQDVFGGLVKSFCDEGLKEEALVI 366
Query: 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
E+ + V + LMDAY + E+ + ++ + Y+ + + +
Sbjct: 367 QTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFAEIKAKGLKPTAATYNILMDAYAR 426
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET-AYGRLKR-----SRH 215
+ Q +++E L+EM G + + I Y R +++M A+ R+K+ S H
Sbjct: 427 RMQPDIVETLLREMEDLGLEPNVKSFTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSH 486
Query: 216 ----LIDK-------------------EGIRAVSFTYLK-----------ERKFFMLGEF 241
LI EGI+ TY E+ +
Sbjct: 487 SYTALIHAYSVSGWHEKAYASFEEMWMEGIKPSVETYTSLLDAFRRSGDTEKLMEIWKLM 546
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGN---FKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
LR+ G + + +N LL +A + + + EF +M G P + T+N+ A
Sbjct: 547 LREKIKGTR----ITYNTLLDGFAKQGLYIEARDVVSEFGKM---GLQPSVMTYNMLMNA 599
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
++R L L+ M ++ PD +TY ++ A++ R
Sbjct: 600 YARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVR 639
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 34/187 (18%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VY I G G +LME ++EM G + +F+ Y+R + +
Sbjct: 91 VYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDA------V 144
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
R+ ++ G++A + Y N L N+L A +M
Sbjct: 145 DLVRNQLNTFGVQADTAVY------------------------NHLLNVL----AEGSRM 176
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
K L+ + M++ G PD+ T N A R L LE M +V PD T+ +
Sbjct: 177 KLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTL 236
Query: 331 VDAYLDK 337
+ ++++
Sbjct: 237 MQGFIEE 243
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 54/271 (19%), Positives = 105/271 (38%), Gaps = 16/271 (5%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
++G PD T + C NG V A V + +L V + +++ + G +
Sbjct: 293 ADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELD 352
Query: 132 EIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
E I++Q+ R LP+ ++ I Q +LE + +E+ +G S D T N
Sbjct: 353 EAKGIVNQMVDRGC--LPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNI 410
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
I + G + +K S D+ V++ L + +G+ + + L +
Sbjct: 411 LINALCKVGDPHLGIRLFEEMKSSGCAPDE-----VTYNILIDH-LCSMGKLVNALDLLK 464
Query: 250 KDLGN------LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
+ N + +N ++ + +++ + F +M G TFN +
Sbjct: 465 EMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAK 524
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D +E M E + P +TY ++ Y
Sbjct: 525 RIDDATELIEQMVKEGLQPSNITYNSILTHY 555
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 91/237 (38%), Gaps = 14/237 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +VN + G LPD +T L++ + + EA + EL V + L++
Sbjct: 354 AKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILIN 413
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
A ++G + I + +++ Y+ I G+L + LKEM S G
Sbjct: 414 ALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPR 473
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI--RAVSFTYL-----KERKF 235
+ T N I + + E E + ++ D GI AV+F L K ++
Sbjct: 474 STVTYNTIIDALCKQMRIEEAEEVFDQM-------DAHGISRSAVTFNTLIDGLCKAKRI 526
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
E + + N+ +N +L Y +K M+ GF D+ T+
Sbjct: 527 DDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTY 583
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ L + PHL +L +KS G PD T L+ + G ++ A + +E+ S+
Sbjct: 411 LINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNG 470
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
S + ++DA + E + DQ+ ++ I K +++
Sbjct: 471 CPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDAT 530
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
+++MV G + T N+ + +Y + G L
Sbjct: 531 ELIEQMVKEGLQPSNITYNSILTHYCKQGDL 561
>gi|218197431|gb|EEC79858.1| hypothetical protein OsI_21342 [Oryza sativa Indica Group]
Length = 1013
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 122/308 (39%), Gaps = 19/308 (6%)
Query: 40 KQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQ 99
K EG + L+ R+ A L + G PD++ + L++ Y + +AQ
Sbjct: 573 KPEGLSSVSQLIMKFAREGSTDEAKFLYEHLTELGAKPDDTAIATLIVQYGQAQQLEQAQ 632
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE----IISIIDQVSCRNADLLPEVYSRA 155
++E S+SF + V + ++DA R G E + +IDQ N D + S
Sbjct: 633 KLFE-TASTSFPVGGSVYNAMVDALCRCGKTEEAYRLFMELIDQ--GHNGDAV--TISIL 687
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
++ KQ + + EN + + +D+ N FI G L + Y R+ S
Sbjct: 688 VTHLTKQEKFQEAENIIYRCLHDEAELDTVVYNTFIKSMLESGKLYSAVSIYDRMISSGI 747
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFL---RDVGL--GRKDLGNLLWNLLLLSYAGNFKM 270
+ + Y + K E +++GL K N+L AG
Sbjct: 748 PRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLS---FYGKAGKHHE 804
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
SL F RM E G P +FN A++ + + + + M+ + PD TY +
Sbjct: 805 ASLL--FSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTYLAL 862
Query: 331 VDAYLDKR 338
+ AY + +
Sbjct: 863 IRAYTEGK 870
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G+ K H A L + +K +G+ P + ++ YA +G EA+++++E+ ++ V
Sbjct: 797 GKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDS 856
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKE 174
L+ AY C+++ I + N ++ IS F K+GQ++ + +
Sbjct: 857 HTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMYNQ 916
Query: 175 MVSRGFSVDSA 185
M G D A
Sbjct: 917 MEEAGIPADLA 927
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/199 (18%), Positives = 81/199 (40%)
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151
+G + A +++ ++SS S+Q + ++ YG+ G + + + + +
Sbjct: 729 SGKLYSAVSIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKT 788
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ +S +GK G+ M G + N I Y+ G E E + ++
Sbjct: 789 YTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQ 848
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
++ H+ D A+ Y + + + E ++ + +N L+ ++ ++
Sbjct: 849 KNNHVPDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQID 908
Query: 272 SLQREFMRMSEAGFHPDLT 290
QR + +M EAG DL
Sbjct: 909 EAQRMYNQMEEAGIPADLA 927
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 112/271 (41%), Gaps = 14/271 (5%)
Query: 74 GLLPDNSTLCALMLC-YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
G PD + C +LC YA G + + + + + V S+ V + ++ + + +
Sbjct: 200 GCEPD-AVACGTLLCAYARWGKLNDMLMFYAAVRRRDIVPSISVFNFMVSSLQKQKLHGK 258
Query: 133 IISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
+I + +Q+ A++ P Y+ I + K+G LE + EM R F + AT +
Sbjct: 259 VIHLWEQM--LEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLL 316
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
I ++ G E Y +K + +V Y K + ++ +
Sbjct: 317 ISLCAKHGKGEEALGLYDEMKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKI 376
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM---FWD 307
+++ +L+ Y + QR F + +AG D T+ VA +++ M +D
Sbjct: 377 VPDEVIYGILVRIYGKLGLYEDAQRMFEEIDKAGLLSDEQTY----VAMAQVHMNVQNYD 432
Query: 308 LHLS-LEHMKHESVGPDLVTYGCVVDAYLDK 337
L L+ M+ +V P +Y ++ ++ K
Sbjct: 433 RALQVLDAMRARNVKPSQFSYSALLRCHVAK 463
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 54/275 (19%), Positives = 99/275 (36%), Gaps = 30/275 (10%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
P L+ Y G + A+V + E+L + L+ AY R G N+++
Sbjct: 168 PSVVAYTILLRLYGQVGKIKLAEVTFLEMLQAGCEPDAVACGTLLCAYARWGKLNDMLMF 227
Query: 137 IDQVSCRNADLLP--EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
V R D++P V++ +S KQ + + ++M+ + + T I Y
Sbjct: 228 YAAV--RRRDIVPSISVFNFMVSSLQKQKLHGKVIHLWEQMLEANVAPNQFTYTVVIGSY 285
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG- 253
++ G L E A+G +KR R + + E + +L G G + LG
Sbjct: 286 AKEGMLEEAMDAFGEMKRRRFVPE-------------EATYSLLISLCAKHGKGEEALGL 332
Query: 254 ------------NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
N +L Y N F M + PD + I + +
Sbjct: 333 YDEMKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGK 392
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
+ ++ D E + + D TY + +++
Sbjct: 393 LGLYEDAQRMFEEIDKAGLLSDEQTYVAMAQVHMN 427
>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
Length = 521
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/288 (18%), Positives = 119/288 (41%), Gaps = 20/288 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL++ R+K +++ +++EG+ T L+ + + + + ++ E+ ++
Sbjct: 171 SLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKAN 230
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ V V + + +++AY R G ++D+ + Y I F K GQ+E
Sbjct: 231 NVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAA 290
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
E L +M +G ++ N I Y R G + + + + ++K G+ +T
Sbjct: 291 EMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDA-------LKIKAAMEKIGVELNIYT 343
Query: 229 YLKERKFFMLGEFLRDVGLGRKDL--GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
Y GL R + + + L+ + + M +R F M+E G
Sbjct: 344 Y-----------NTLACGLCRMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGAT 392
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
P + T+++ +++ + + M+ + PD+ TY +V +
Sbjct: 393 PSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFVPDVYTYASLVHGH 440
>gi|357138611|ref|XP_003570884.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Brachypodium distachyon]
Length = 864
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 106/271 (39%), Gaps = 12/271 (4%)
Query: 32 ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN 91
A ++ + V C ++V R+ + A +LV+ ++++GL P+ T +
Sbjct: 193 ALAVLDAMPEMNLVVCNTVVAGFCREGRVDEAERLVDRMRAQGLAPNVVTFNGRISALCK 252
Query: 92 NGFVLEA-------QVVWEELLSSSFVLSVQV-LSDLMDAYGRIGCFNEIISIIDQVSCR 143
G VLEA Q WE+ L ++ V LS DA G +E ++D + C
Sbjct: 253 AGRVLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDA----GMVDEATVLVDIMRCG 308
Query: 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
E Y+R +S K G++ + L EM G +S T N + + G ++
Sbjct: 309 GFLRKVESYNRWLSGLVKNGRVGEAQELLSEMAHEGVQPNSYTYNIIVDGLCKEGKAFDV 368
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLS 263
++ D ++ Y + L ++ +N+LL S
Sbjct: 369 RRVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTAANRILDEMAQKGCAPNLFTYNVLLQS 428
Query: 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
+ ++R RMSE G+ D + NI
Sbjct: 429 LLKAGRTTEVERLLERMSEKGYSLDTASCNI 459
>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
Length = 822
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 115/295 (38%), Gaps = 10/295 (3%)
Query: 29 GDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC 88
GD+ R I V SL+ GR ++P A ++ ++ E P+ T AL+
Sbjct: 379 GDIKRNGI----VPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDA 434
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
Y +NGF+ EA ++ ++ +V + L+ A R + +++ R +L
Sbjct: 435 YGSNGFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLN 494
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
Y+ AI + +LE + M + DS T F I S +++ A
Sbjct: 495 TAAYNSAIGSYINAAELEKAIALYQTMRKKKVKADSVT---FTILISGSCRMSKYPEAIS 551
Query: 209 RLKRSRHL---IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
LK L + KE +V Y K+ + + + + + +L +Y
Sbjct: 552 YLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYN 611
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
+ K F+ M G PD + AF++ ++ + ++ M+ + V
Sbjct: 612 ASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEV 666
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 101/260 (38%), Gaps = 4/260 (1%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T ++M Y+ G + + V+E +L+ ++ + LM AY G +S+
Sbjct: 318 PDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSV 377
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ RN ++P+V Y+ ++ +G+ Q + M + T NA I Y
Sbjct: 378 FGDIK-RNG-IVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAY 435
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
G L E + ++++ + + + + +K + L +L
Sbjct: 436 GSNGFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNT 495
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+N + SY +++ + M + D TF I RMS + + L+
Sbjct: 496 AAYNSAIGSYINAAELEKAIALYQTMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKE 555
Query: 315 MKHESVGPDLVTYGCVVDAY 334
M+ S+ Y V+ AY
Sbjct: 556 MEDLSIPLTKEVYSSVLCAY 575
>gi|255557995|ref|XP_002520026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540790|gb|EEF42350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1040
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/294 (19%), Positives = 102/294 (34%), Gaps = 35/294 (11%)
Query: 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102
G V + +V+ L + K A +V E + D + G + A ++
Sbjct: 686 GAVGVSIIVKALSNRGKHQEAENIVRKSIRENMDLDTVAYNIFIKAMLEAGRLHFAASIY 745
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162
E +LS S+Q + ++ YGR ++ + I + L + Y +S +GK
Sbjct: 746 EHMLSLGVTPSIQTYNTMISVYGRGEKLDKAVEIFNTACSSGVSLDEKAYMNMVSYYGKA 805
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G+ +M G + N I ++ G Y K H + ++G
Sbjct: 806 GKRNEASLLFTKMQEEGIKPGKVSYNIMIKVFAIAG-------LYHEAKELFHAMQRDGW 858
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
SFTYL L+ +Y + K + M +
Sbjct: 859 PPDSFTYLS----------------------------LVQAYTESLKYSEAEETIDGMPK 890
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
G P + FN A+++ + + + + + PDL Y ++ YLD
Sbjct: 891 KGVLPSCSHFNHLLSAYAKAGLMVEAERVYKKLLTSGLSPDLACYRAMLRGYLD 944
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 95/239 (39%), Gaps = 37/239 (15%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L + S GL+P N T +L+ Y NG +A ++ E+ S + L+
Sbjct: 346 AGRLYEDLISHGLVPSNFTCASLLTMYYKNGDFSKALSLFMEMQSKKIAADEVIYGLLIR 405
Query: 123 AYGRIGCFNEI-----------------------------------ISIIDQVSCRNADL 147
YG++G +++ +S+I+ + RN L
Sbjct: 406 IYGKLGLYDDAQKTFEETEQLGLLSDEKTYLAMAQVHLNSGNSEKALSVIEVMKSRNIWL 465
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y + C+ + L+ E T + + G D+ + N + Y R + +T +
Sbjct: 466 SRFAYIVLLQCYVMKEDLDCAEATYQALSKTGLP-DAGSCNDMLNLYLRLDLTEKAKTFF 524
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
++++ + D+E + V+ KE + + +VG + L + + LL++Y G
Sbjct: 525 IQIRKDQVDFDEELYKTVTKVLCKEGMLSDVEQLTEEVGTN-ESLKDKIIRSLLVTYGG 582
>gi|449436637|ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Cucumis sativus]
gi|449509164|ref|XP_004163514.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Cucumis sativus]
Length = 547
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134
+LPD+++ ++ C++ NG + ++ ++++ ++ SV+V + L R CFNE +
Sbjct: 282 ILPDSTSYTHMISCFSKNGNLFDSLRFYDQMKKRDWIPSVEVYNSLAYVLTRENCFNEAL 341
Query: 135 SIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
I++++ + L P+ Y+ IS + G+L+ ++ L M S T ++FI
Sbjct: 342 KILEKI--KEVGLRPDSTTYNSLISPLCEAGKLDEAKDVLTMMTEDNISPTIETYHSFI 398
>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Vitis vinifera]
Length = 590
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 118/300 (39%), Gaps = 20/300 (6%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C L+ L + + ++ ++ + G++P+ L+ +G V +A+ + E+
Sbjct: 165 CTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEME 224
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
S + + L+ Y + G E + I D++ + P++ Y+ I F ++G+
Sbjct: 225 SRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRM--ERGGVSPDIVTYNSLIYGFCREGR 282
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ +E+ G + + T I Y R L E R R +++ EG+
Sbjct: 283 MREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEA-------LRLREVMEVEGLHP 333
Query: 225 VSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277
TY +E K L ++ + + N+ N L+ +Y M S +
Sbjct: 334 GVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVK 393
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
+M EAG PD TF F ++ L M P TY +VD+Y D+
Sbjct: 394 KKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQ 453
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 125/301 (41%), Gaps = 23/301 (7%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L R + A +L++T++S G+ P T + + +G +A +E++ +
Sbjct: 407 TLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAK 466
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
V ++ + + + +G E ++ + + R L P+ Y+ + C+ K GQ++
Sbjct: 467 GIVPNIVACNASLYSLAEMGRLREAKTMFNGL--RENGLAPDSVTYNMMMKCYSKVGQVD 524
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
N L EM+ G D N+ I + G + E + R+K K V+
Sbjct: 525 EAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDM-----KLSPTVVT 579
Query: 227 FTYL-----KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ L KE + E + + + +N LL + N +++ + F +M+
Sbjct: 580 YNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMT 639
Query: 282 EAGFHPDLTTFNIRAVAFSRMS----MFWDLH-----LSLEHMKHESVGPDLVTYGCVVD 332
PD+ T+N + + FW H + +H+ ++ P LV G + D
Sbjct: 640 VMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGD 699
Query: 333 A 333
A
Sbjct: 700 A 700
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 27 KNGDLARKIIRYRKQEG------FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K+G+ + + + K + V C + + L + A + N ++ GL PD+
Sbjct: 449 KSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSV 508
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T +M CY+ G V EA + E++ + V V++ L+D+ + G +E + D++
Sbjct: 509 TYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRM 568
Query: 141 SCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
++ L P V Y+ +S GK+G+++ + M+ + S ++ + N +
Sbjct: 569 --KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLL 619
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 107/283 (37%), Gaps = 22/283 (7%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L +K+ G PD T L+ + +G + E +++E++S + ++
Sbjct: 807 AWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVIS 866
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ + ++ + + + P Y I K G+LE +EM G
Sbjct: 867 SLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKP 926
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA--VSFTYLKE-------- 232
+ A N I Y + G + ETA KR + EGIR S+T L +
Sbjct: 927 NCAIFNILINGYGKIG---DTETACQLFKR----MVNEGIRPDLKSYTILVDCLCLAGRV 979
Query: 233 -RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
+ E L+ GL D + +N ++ + +M+ + M G PDL T
Sbjct: 980 DEALYYFNE-LKSTGL---DPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYT 1035
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+N + M E ++ + PD+ TY ++ Y
Sbjct: 1036 YNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGY 1078
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 4/148 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ G+ A QL + +EG+ PD + L+ C G V EA + EL S+
Sbjct: 934 LINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG 993
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLEL 167
+ +++ G+ E +++ +++ RN ++P++Y+ + G G +E
Sbjct: 994 LDPDFIAYNRIINGLGKSQRMEEALALYNEM--RNRGIVPDLYTYNSLMLNLGLAGMVEQ 1051
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYS 195
+ +E+ G D T NA I YS
Sbjct: 1052 AKRMYEELQLAGLEPDVFTYNALIRGYS 1079
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 105/282 (37%), Gaps = 26/282 (9%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
SEGL P T ALM+ V+ +E+ +V + + GR G +
Sbjct: 220 SEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKID 279
Query: 132 EIISI---IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN 188
E I +D C DL+ Y+ I GQLE + +M + G D
Sbjct: 280 EAYEIFRRMDDEGC-GPDLV--TYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYI 336
Query: 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERKF---FMLGE 240
+ ++ FG L + + +++ ++ D V+FT L K R F F +
Sbjct: 337 TLLDKFNDFGDLDTFKEFWSQMEADGYMPD-----VVTFTILVDVLCKARDFDEAFATFD 391
Query: 241 FLRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+R G+ L NL +N L+ +++ + M G P T+ F
Sbjct: 392 VMRKQGI----LPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYF 447
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
+ + E MK + + P++V C Y +GR
Sbjct: 448 GKSGETGKAVETFEKMKAKGIVPNIV--ACNASLYSLAEMGR 487
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 126/308 (40%), Gaps = 26/308 (8%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G + + V ++ + FVL+ + L+ + G E + + ++ + Y
Sbjct: 171 GGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTY 230
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
S + GK+ E++ LKEM G + T F I G +++ AY +R
Sbjct: 231 SALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYT---FTICIRVLGRAGKIDEAYEIFRR 287
Query: 213 SRHLIDKEGIRA--VSFTYLKERKFFMLGE-------FLRDVGLGRKDLGNLLWNLLLLS 263
+D EG V++T L + G+ F++ G K +++ LL
Sbjct: 288 ----MDDEGCGPDLVTYTVLID-ALCNAGQLENAKELFVKMKANGHKP-DQVIYITLLDK 341
Query: 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+ + + + + +M G+ PD+ TF I + F + + + M+ + + P+
Sbjct: 342 FNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPN 401
Query: 324 LVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVF----EAFGK-GDFHSSSE 378
L TY ++ L R GR D L ++ +S V Y + + FGK G+ + E
Sbjct: 402 LHTYNTLICGLL--RAGRIED-ALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVE 458
Query: 379 AFLEFKRQ 386
F + K +
Sbjct: 459 TFEKMKAK 466
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 64/319 (20%), Positives = 117/319 (36%), Gaps = 55/319 (17%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA--------------- 98
LGR K A+++ + EG PD T L+ N G + A
Sbjct: 272 LGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPD 331
Query: 99 QVV--------------------WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
QV+ W ++ + ++ V + L+D + F+E + D
Sbjct: 332 QVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFD 391
Query: 139 QVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ R +LP + Y+ I + G++E L M S G + T FI Y+ +
Sbjct: 392 VM--RKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGK 449
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-----LKERKFFMLGEFLRDVGLGRKD 251
G + + ++K + + A ++ L+E K G LR+ GL
Sbjct: 450 SGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNG--LRENGLAPD- 506
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF---SRMSMFWDL 308
++ +N+++ Y+ ++ M G PD+ N + R+ W +
Sbjct: 507 --SVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQM 564
Query: 309 HLSLEHMKHESVGPDLVTY 327
+ MK + P +VTY
Sbjct: 565 ---FDRMKDMKLSPTVVTY 580
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 62/172 (36%), Gaps = 35/172 (20%)
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+G L M L +M GF +++ + N I + G E Y R+ EG
Sbjct: 170 RGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMV-------SEG 222
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
++ LK M V LG+K ++ LL M
Sbjct: 223 LKPS----LKTYSALM-------VALGKKRDSEMVMVLL-----------------KEME 254
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ G P++ TF I R + + M E GPDLVTY ++DA
Sbjct: 255 DLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDA 306
>gi|57863818|gb|AAW56871.1| unknown protein [Oryza sativa Japonica Group]
gi|222631991|gb|EEE64123.1| hypothetical protein OsJ_18955 [Oryza sativa Japonica Group]
Length = 433
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI---I 134
D + + ++ A G + + +++EEL L V + ++D G+ G +++ +
Sbjct: 197 DPTVMNRIVFTTAKYGQIDKCLIIFEELKKDQRGLDVVTFNTILDMLGKAGRVDQMLQEV 256
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
++D++ + D++ Y+ I+C + G+L+ + +EMV RG D T A I +
Sbjct: 257 KLMDELG-HSPDIV--TYNTVINCLRRLGRLDQCKIFAREMVERGIDPDLRTYTALIDIF 313
Query: 195 SRFGSLTEMETAYGRLKRSRH 215
R G +TE + ++KRS
Sbjct: 314 GRAGHITEALEMFDQMKRSHQ 334
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++++ LG+ + Q V + G PD T ++ C G + + ++ E++
Sbjct: 238 TILDMLGKAGRVDQMLQEVKLMDELGHSPDIVTYNTVINCLRRLGRLDQCKIFAREMVER 297
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++ + L+D +GR G E + + DQ+ R+ VY IS K GQ EL
Sbjct: 298 GIDPDLRTYTALIDIFGRAGHITEALEMFDQMK-RSHQPSIYVYRALISDLKKAGQFELA 356
Query: 169 ENTLKEM 175
+ +EM
Sbjct: 357 QKLSEEM 363
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 117/311 (37%), Gaps = 33/311 (10%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+S + L + + A ++ + ++G +PD + L+ YA G + ++ +
Sbjct: 341 SSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMAD 400
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
V + ++ L+ A+ + G +E + + ++ + YS IS F + G+L
Sbjct: 401 KGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLAD 460
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+M+S G ++A ++ I + G L + KE I +
Sbjct: 461 AMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKA---------------KEFISEMMS 505
Query: 228 TYLKERKFFMLGEFLRDVGL-GR----KDLGNLL-----------WNLLLLSYAGNFKMK 271
L + + + GR +D+ NL+ +N L+ Y KM+
Sbjct: 506 KGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKME 565
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M G PD+ T N + + D + M H+ V P VTY V+
Sbjct: 566 KAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVL 625
Query: 332 DAYLDKRLGRN 342
D L R GR
Sbjct: 626 DGLL--RAGRT 634
>gi|297724211|ref|NP_001174469.1| Os05g0481800 [Oryza sativa Japonica Group]
gi|255676452|dbj|BAH93197.1| Os05g0481800 [Oryza sativa Japonica Group]
Length = 438
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI---I 134
D + + ++ A G + + +++EEL L V + ++D G+ G +++ +
Sbjct: 197 DPTVMNRIVFTTAKYGQIDKCLIIFEELKKDQRGLDVVTFNTILDMLGKAGRVDQMLQEV 256
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
++D++ + D++ Y+ I+C + G+L+ + +EMV RG D T A I +
Sbjct: 257 KLMDELG-HSPDIV--TYNTVINCLRRLGRLDQCKIFAREMVERGIDPDLRTYTALIDIF 313
Query: 195 SRFGSLTEMETAYGRLKRSRH 215
R G +TE + ++KRS
Sbjct: 314 GRAGHITEALEMFDQMKRSHQ 334
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++++ LG+ + Q V + G PD T ++ C G + + ++ E++
Sbjct: 238 TILDMLGKAGRVDQMLQEVKLMDELGHSPDIVTYNTVINCLRRLGRLDQCKIFAREMVER 297
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++ + L+D +GR G E + + DQ+ R+ VY IS K GQ EL
Sbjct: 298 GIDPDLRTYTALIDIFGRAGHITEALEMFDQMK-RSHQPSIYVYRALISDLKKAGQFELA 356
Query: 169 ENTLKEM 175
+ +EM
Sbjct: 357 QKLSEEM 363
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 126/320 (39%), Gaps = 41/320 (12%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
+++R Q V +L+ + + + A+ L + G+ PD T A + G
Sbjct: 267 EMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTG 326
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN--ADLLPEV 151
+ +A ++EE+ + VL+ L+DA+ + G + + +++ R ADL+
Sbjct: 327 RIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLV--A 384
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL-TEMETAYGRL 210
Y+ ++ F + ++ + ++EM G D T I + G L T ME
Sbjct: 385 YNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEM----- 439
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ + EG+ TY + G LS AG +
Sbjct: 440 ---KQEMSDEGVALDDVTYTA----LISG----------------------LSKAG--RS 468
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+R M EAG PD TT+ + AF + L+ M+++ P +VTY V
Sbjct: 469 VDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVV 528
Query: 331 VDAYLDKRLGRNLDFGLSKM 350
++ + +N D L+ M
Sbjct: 529 MNGFCSLGQMKNADMLLNAM 548
>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
Length = 796
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/309 (18%), Positives = 129/309 (41%), Gaps = 1/309 (0%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L +++ R + V L+ L R ++ ++ ++ G+ P+ ++ +
Sbjct: 268 LKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHC 327
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
G EA +++E++S +V + + A + G I+D++ +
Sbjct: 328 RKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCS 387
Query: 151 VYSRAISCFGK-QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+++ ++ + G+L+L+ ++EM++R + A A I + G E + +
Sbjct: 388 LFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQ 447
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269
+ ++ A+ + + L+ + +L + +N+++ K
Sbjct: 448 VLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASK 507
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
M + M + GF PDL TFNI + + ++ L+ MK E + PD+VTYG
Sbjct: 508 MDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGT 567
Query: 330 VVDAYLDKR 338
++D Y +
Sbjct: 568 IIDGYCKAK 576
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 65/155 (41%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ GR A +++T+K G+ P T +LM + G V E + V+ + +
Sbjct: 602 ALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVK 661
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
L V + ++ + +IG +E + ++ R Y+ + + K G E
Sbjct: 662 DIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEA 721
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
EMVS G DS + N I + SL +M
Sbjct: 722 SKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKM 756
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 48/254 (18%), Positives = 103/254 (40%), Gaps = 28/254 (11%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSR 154
EA + ++++ F + + + Y +G EI+ ++DQ+ ++ L P++ Y
Sbjct: 510 EAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQM--KSEGLKPDIVTYGT 567
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
I + K + L E++ G ++ NA I Y R G++++ A G L +
Sbjct: 568 IIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISD---AIGILDTMK 624
Query: 215 HLIDKEGIRAVSFTY------------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+ GI+ TY ++E K ++D+ +LG + + +++
Sbjct: 625 Y----NGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDI-----ELGVIGYTIIIQ 675
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
+ K+ F M G P+ T+ A+S+ + + M + P
Sbjct: 676 GFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVP 735
Query: 323 DLVTYGCVVDAYLD 336
D V+Y ++ + +
Sbjct: 736 DSVSYNTLISGFCE 749
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 4/167 (2%)
Query: 40 KQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
K EG V ++++ + K H A++ + + GL P+ AL+ Y NG +
Sbjct: 554 KSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNI 613
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
+A + + + + + + LM G E+ ++ Q ++ +L Y+
Sbjct: 614 SDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTII 673
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
I F K G+++ KEM SRG + T + YS+ G+ E
Sbjct: 674 IQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEE 720
>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 706
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 18/172 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ +GR K+ A + + S GL P+ T AL+ Y F +A V++E+
Sbjct: 326 ALLYAMGRAKRARDAKAIYGEMISNGLSPNWPTYAALLQAYCRARFNRDALNVYKEMKEK 385
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE---VYSRAISCFGKQGQL 165
L + + + L D +GC +E + I + + +++ P Y+ I+ + G++
Sbjct: 386 GKDLDILLYNMLFDMCANVGCVDEAVKIFEHM--KSSGTCPPDSFTYASLINMYSSIGKI 443
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
ME EM+ GF + II LT + YG+ KR+ ++
Sbjct: 444 LEMEAMFNEMMESGFEPN-------IIV------LTSLVHCYGKAKRTDDVV 482
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 63 AHQLVNTVKSEGLLPDNS-TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121
A ++ +KS G P +S T +L+ Y++ G +LE + ++ E++ S F ++ VL+ L+
Sbjct: 410 AVKIFEHMKSSGTCPPDSFTYASLINMYSSIGKILEMEAMFNEMMESGFEPNIIVLTSLV 469
Query: 122 DAYGRIGCFNEIISIIDQV 140
YG+ ++++ I +Q+
Sbjct: 470 HCYGKAKRTDDVVKIFNQL 488
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 57/292 (19%), Positives = 103/292 (35%), Gaps = 42/292 (14%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
+ CAS+ PH A + + S G PDN+ +++ Y G A +++
Sbjct: 222 MISCASVCS------LPHKAVKWFEMMPSFGCEPDNNVCSSMIYAYTRTGNTDMALRLYD 275
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
+ + + V S L+ YG G + +++ + + A Y+ + G+
Sbjct: 276 RAKAGKWHVDTAVFSGLIKMYGVSGNYVGCLNVYNDMKVLGAKPNLTTYNALLYAMGRAK 335
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
+ + EM+S G S + T A + Y R R R + KE
Sbjct: 336 RARDAKAIYGEMISNGLSPNWPTYAALLQAYCR-----------ARFNRDALNVYKE--- 381
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283
+KE+ KDL LL+N+L A + + F M +
Sbjct: 382 ------MKEKG---------------KDLDILLYNMLFDMCANVGCVDEAVKIFEHMKSS 420
Query: 284 G-FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G PD T+ +S + ++ M P+++ +V Y
Sbjct: 421 GTCPPDSFTYASLINMYSSIGKILEMEAMFNEMMESGFEPNIIVLTSLVHCY 472
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/313 (20%), Positives = 125/313 (39%), Gaps = 32/313 (10%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ L + K + ++ N +K PD T +++ + G A+ V++E++ S
Sbjct: 261 MINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESG 320
Query: 110 FVLSVQVLSDLMDAYGRIG----CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
V+ + ++ R G CF E+ +++ + +C N Y+ I ++
Sbjct: 321 LSPDVRTYNAMLSGLFRTGKLNKCF-ELWNVMSKNNCCNI----VSYNMLIQGLLDNKKV 375
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGI 222
E + + RG DS T +G L G L ++ ++++ EG
Sbjct: 376 EQAICYWQLLHERGLKADSTT----------YGLLINGLCKNGYLNKALRILEEAENEGA 425
Query: 223 RAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
+F Y K+ E + + R+ L + ++N L+ Y FK++
Sbjct: 426 DLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAIS 485
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
M P + ++N + F D +LSL+ M E + PD++TY ++D
Sbjct: 486 VLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLC 545
Query: 336 DKRLGRNLDFGLS 348
G +D L+
Sbjct: 546 R---GEKVDMALN 555
>gi|218196986|gb|EEC79413.1| hypothetical protein OsI_20368 [Oryza sativa Indica Group]
Length = 433
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI---I 134
D + + ++ A G + + +++EEL L V + ++D G+ G +++ +
Sbjct: 197 DPTVMNRIVFTTAKYGQIDKCLIIFEELKKDQRGLDVVTFNTILDMLGKAGRVDQMLQEV 256
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
++D++ + D++ Y+ I+C + G+L+ + +EMV RG D T A I +
Sbjct: 257 KLMDELG-HSPDIV--TYNTVINCLRRLGRLDQCKIFAREMVERGIDPDLRTYTALIDIF 313
Query: 195 SRFGSLTEMETAYGRLKRSRH 215
R G +TE + ++KRS
Sbjct: 314 GRAGHITEALEMFDQMKRSHQ 334
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++++ LG+ + Q V + G PD T ++ C G + + ++ E++
Sbjct: 238 TILDMLGKAGRVDQMLQEVKLMDELGHSPDIVTYNTVINCLRRLGRLDQCKIFAREMVER 297
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++ + L+D +GR G E + + DQ+ R+ VY IS K GQ EL
Sbjct: 298 GIDPDLRTYTALIDIFGRAGHITEALEMFDQMK-RSHQPSIYVYRALISDLKKAGQFELA 356
Query: 169 ENTLKEM 175
+ +EM
Sbjct: 357 QKLSEEM 363
>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
Length = 590
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 118/300 (39%), Gaps = 20/300 (6%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C L+ L + + ++ ++ + G++P+ L+ +G V +A+ + E+
Sbjct: 165 CTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEME 224
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
S + + L+ Y + G E + I D++ + P++ Y+ I F ++G+
Sbjct: 225 SRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRM--ERGGVSPDIVTYNSLIYGFCREGR 282
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ +E+ G + + T I Y R L E R R +++ EG+
Sbjct: 283 MREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEA-------LRLREVMEVEGLHP 333
Query: 225 VSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277
TY +E K L ++ + + N+ N L+ +Y M S +
Sbjct: 334 GVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVK 393
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
+M EAG PD TF F ++ L M P TY +VD+Y D+
Sbjct: 394 KKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQ 453
>gi|326492636|dbj|BAJ90174.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 631
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 113/273 (41%), Gaps = 8/273 (2%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
+V +++ G+ PD T + YA N A+ + E++ + S + ++ Y
Sbjct: 239 VVGRMRARGVEPDVVTYNTVASAYAKNDETWRAEELVVEMVRARLRTSERTWGIIVGGYC 298
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
R G E + + Q+ ++A +LP V ++ + F ++ L M G D
Sbjct: 299 REGRLEEALRCVRQM--KDAGVLPNVIVFNTLLKGFLDANDTAAADDVLGLMEHFGIKPD 356
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL- 242
T + + +S G + + + ++ + D + ++ +++ ++ E L
Sbjct: 357 IVTYSHQLNAFSSLGHMAKCSKVFDKMVEAGIEPDPQVYSILAKGHVRAQQPGKAEELLE 416
Query: 243 RDVGLG-RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
R LG R ++ + + ++ + M + R + +M +AG P+L TF +S
Sbjct: 417 RMCRLGVRPNV--VTFTTVISGWCSVADMDNATRVYRKMRDAGVRPNLRTFETLIWGYSE 474
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
W L+ M+ + P TY V DA+
Sbjct: 475 QKQPWKAEEVLQMMQEAGIRPKQSTYSLVADAW 507
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/329 (19%), Positives = 117/329 (35%), Gaps = 24/329 (7%)
Query: 20 PSHQTHPKNGDLARKII-RYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD 78
PS T G + ++ R R+ G +D KKPH A L + EG P
Sbjct: 49 PSTCTTCAKGHTCQAVVSRTREMRGLIDA----------KKPHQAQDLFGHLADEGHRPS 98
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
T L+ N + + ++ + L++++ G E S
Sbjct: 99 LVTYTTLLTAVTNQRAFEAIPSLLAGMDAAGLRPDAIFFNALINSFVEAGRMGEATSTFW 158
Query: 139 QVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEM-----------VSRGFSVDSA 185
++S + P + ++ I FG G+ + + M V+ +
Sbjct: 159 KMSRHHPGCRPTISTFNTLIKGFGIAGRPDESQRIFDMMAGGDGDGDRDRVASTVRPNLT 218
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T N + + L E GR++ D V+ Y K + + E + ++
Sbjct: 219 TYNILVKAWCDHRRLEEAWGVVGRMRARGVEPDVVTYNTVASAYAKNDETWRAEELVVEM 278
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
R W +++ Y +++ R +M +AG P++ FN F +
Sbjct: 279 VRARLRTSERTWGIIVGGYCREGRLEEALRCVRQMKDAGVLPNVIVFNTLLKGFLDANDT 338
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
L M+H + PD+VTY ++A+
Sbjct: 339 AAADDVLGLMEHFGIKPDIVTYSHQLNAF 367
>gi|115529197|dbj|BAF34331.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 728
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 116/309 (37%), Gaps = 40/309 (12%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + ++ G+ P + C ++ Y NG V EA+ ++ L SS L + + +++
Sbjct: 365 AKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNVMIN 424
Query: 123 AYGRIGCFNEIISIIDQVS-----------------CRNADL---LPEVYSR-------- 154
Y R I + + C+ +L E+Y R
Sbjct: 425 VYMRCDMPEGAIKVYKLMEEDHLLPDAYTYHSMLRMCQKCNLPAQAEEIYWRLRNSDVEL 484
Query: 155 -------AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
++ K LE M +EM+ G+ + T N I Y + G E A+
Sbjct: 485 DEVMCNCVLNTCAKFLPLEEMHKLFQEMIDVGYVPYNITFNVMIDLYGKAGMP---ERAH 541
Query: 208 GRLKRSRHL--IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
LK ++ DK + Y K++ F + L ++ +N +L +Y
Sbjct: 542 KALKLAQQFGSADKISFSTLVHAYAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILDAYG 601
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+M+ + RM +G DL ++NI + + M ++ M+ E V PD
Sbjct: 602 KAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRW 661
Query: 326 TYGCVVDAY 334
TY ++ Y
Sbjct: 662 TYNTIIRTY 670
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 11/227 (4%)
Query: 64 HQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQV-LSDLMD 122
H+L + G +P N T ++ Y G A + L+ F + ++ S L+
Sbjct: 506 HKLFQEMIDVGYVPYNITFNVMIDLYGKAGMPERAHKALK--LAQQFGSADKISFSTLVH 563
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
AY + F + + + ++ E Y+ + +GK GQ+E + + L M + G +
Sbjct: 564 AYAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRM 623
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK----EGIRAVSFTYLKERKFFML 238
D A+ N I Y + + EMET + ++ + D+ IR F +R +
Sbjct: 624 DLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAVYWF 683
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
+ ++D G+ + + +L+ ++ + R +RMS+AG+
Sbjct: 684 -KAMQDAGISPD---RVTYMILVSTFERAGNIDEAARWCLRMSQAGY 726
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 105/270 (38%), Gaps = 10/270 (3%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
P + + +++ G L + + + Y G + EA+ + + + S L + +
Sbjct: 117 PSCDRSMSSYIQAIGTLQEKRLISNVADTYGQQGKIEEAERIMDTVEESGMSLGLVGYNS 176
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVS 177
++ AYG+ +++ +++++ R DL+P+ YS I G+ G+L+ + EM
Sbjct: 177 MITAYGKACLYDKAARLVEKM--REEDLVPDSITYSCMIGACGRVGKLKEALSWFAEMKR 234
Query: 178 RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE---RK 234
S+ N I Y + + + +K+ D + + A Y + +
Sbjct: 235 LEIKPASSNFNTLISPYGKAKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYDRAGLIKD 294
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
+ LRD G ++ G+ + LL Y K R F+ M +AG P
Sbjct: 295 VTEILNLLRDAGW-VEETGS--YGTLLHVYLKCNLPKEALRIFLAMRKAGMAPKEYMCRS 351
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
F MF + M+ V P L
Sbjct: 352 LICTFRDAEMFDGAKSVFKEMQVAGVTPSL 381
>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 809
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 140/344 (40%), Gaps = 41/344 (11%)
Query: 30 DLARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A ++ K GF + C L+ L +K +A + +K+ GL P++ T
Sbjct: 166 DQAFDVLLQTKHCGFAPQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIA 225
Query: 86 MLCYANNGFVLEAQVVWEELLSS----------SFV----------LSVQVLSDLMDAYG 125
+ + G + EA V+ ++ S +F+ L +VL D+++A
Sbjct: 226 IKGFCRKGNLAEAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKI 285
Query: 126 RIGCFNEIISI---IDQVSCRNADLL----------PEVY--SRAISCFGKQGQLELMEN 170
+ F + I ++ + A+ + P+VY IS + G L
Sbjct: 286 PMDVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALA 345
Query: 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230
EMVS+G + ++ + S+ G +E+ + K+ D+ V
Sbjct: 346 LHDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALC 405
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K K E L ++ G+K + +++ + ++ Y K+ + M + G PD+
Sbjct: 406 KLGKVEEAVELLVEMK-GKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDI 464
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
T+N+ A FSR + + L +M+ + V PD VT+ +++
Sbjct: 465 VTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEG 508
>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
Length = 1202
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 120/297 (40%), Gaps = 20/297 (6%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ GRK + L+ ++ G +P+ + L+ C +LEAQ+V ++
Sbjct: 838 LIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRG 897
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+V++ + L+D G + +++ + +L Y+ I G+L E
Sbjct: 898 VSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAE 957
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+ L E+ +G D T N+ I Y G++ Y +K S GI+ TY
Sbjct: 958 DMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTS-------GIKPTLKTY 1010
Query: 230 LKERKFFMLGEFLRD-VGLGRKDLGN-------LLWNLLLLSYAGNFKMKSLQREFMRMS 281
++ ++ + L +K G L++N +L YA + M +M
Sbjct: 1011 -----HLLISLCTKEGIELTKKIFGEMSLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMI 1065
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
E D TT+N + ++ ++ ++ MK + P+ TY +V + + +
Sbjct: 1066 EKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEMK 1122
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 110/257 (42%), Gaps = 21/257 (8%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A+ +++E+L+ + S+ + L+D Y + G + + +++ N + ++ +
Sbjct: 605 DAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLL 664
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
K G +E EN L EM +GF D+ T F I + + S + + A G + +
Sbjct: 665 KGLFKAGMVEDAENVLTEMKDQGFVPDAFT---FSILFDGYSSNDKADAALGVYETA--- 718
Query: 217 IDKEGIRAVSFT-------YLKERKFFMLGEFL-RDVGLGRKDLGNLLWNLLLLSYAGNF 268
+D G++ ++T KE + E L R++ G +L+N ++ Y+
Sbjct: 719 VDS-GLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVP-NEVLYNTMIDGYSRKG 776
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+ + + M + G PD +N F + + + MK + V P + TY
Sbjct: 777 DLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYN 836
Query: 329 CVVDAYLDKRLGRNLDF 345
++ Y GR +F
Sbjct: 837 ILIGGY-----GRKYEF 848
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 102/286 (35%), Gaps = 79/286 (27%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A +VED A ++ +K +G +PD T L Y++N A V+E +
Sbjct: 670 AGMVED---------AENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVD 720
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
S ++ S L++A K+GQ+E
Sbjct: 721 SGLKMNAYTCSILLNA-----------------------------------LCKEGQIEK 745
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
E L +++G + N I YSR G L R+K ++K+G++
Sbjct: 746 AEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVG-----ARMKIDA--MEKQGMKPDHL 798
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y N L+ ++ M++ ++E +M G P
Sbjct: 799 AY----------------------------NCLIRTFCELGDMENAEQEVNKMKLKGVSP 830
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ T+NI + R F L+ M+ P++V+YG +++
Sbjct: 831 SVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINC 876
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ L K A ++ + +GL PD T +L+ Y G V ++EE+ +S
Sbjct: 942 TLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTS 1001
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV---SCRNADLLPEVYSRAISCFGKQGQL 165
+++ L+ C E I + ++ DLL VY+ + C+ G +
Sbjct: 1002 GIKPTLKTYHLLISL-----CTKEGIELTKKIFGEMSLQPDLL--VYNGVLHCYAVHGDM 1054
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
+ N K+M+ + +D T N+ I+ + G L E+ + +K
Sbjct: 1055 DKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMK 1100
>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
Length = 1042
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 99/241 (41%), Gaps = 14/241 (5%)
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
+LA +L+N V+ G+ PD T L+ + + EA V+ ++++ + + +
Sbjct: 251 NLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAM 310
Query: 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSR 178
+ YGR G E + + + LP+ Y+ + F ++G ++ ++ ++MV
Sbjct: 311 ISVYGRCGMSREAGRLFKDLESKG--FLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKM 368
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KER 233
GF D T N I Y + G Y +K S D AV++T L K
Sbjct: 369 GFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPD-----AVTYTVLIDSLGKAN 423
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
E + ++ R ++ L+ YA K + F M +G PD ++
Sbjct: 424 MIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYS 483
Query: 294 I 294
+
Sbjct: 484 V 484
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 79/181 (43%), Gaps = 4/181 (2%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
++ +R Q +++ GR A +L ++S+G LPD T +L+ +A G
Sbjct: 295 MVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGN 354
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID--QVSCRNADLLPEVY 152
V + + + E+++ F + ++ YG+ G + + ++S R+ D + Y
Sbjct: 355 VDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAV--TY 412
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ I GK ++ + EM++ T +A I Y++ G E E + + R
Sbjct: 413 TVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLR 472
Query: 213 S 213
S
Sbjct: 473 S 473
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 109/301 (36%), Gaps = 45/301 (14%)
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL--ELMEN 170
+VQV + +M Y R G F ++ ++D + R + ++ I+ K G + L
Sbjct: 196 TVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIE 255
Query: 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230
L E+ G D T N I SR +L E Y + R D A+ Y
Sbjct: 256 LLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYG 315
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
+ G+ R+ AG R F + GF PD
Sbjct: 316 R-------------CGMSRE--------------AG--------RLFKDLESKGFLPDAV 340
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGL-SK 349
T+N AF+R + E M G D +TY ++ Y KR +L F L S
Sbjct: 341 TYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMY-GKRGQHDLAFQLYSD 399
Query: 350 MNLDD-SPVVSTDPYVFEAFGKGD-FHSSSEAFLEFKRQRK----WTYRKLIAVYLKKQL 403
M L SP T + ++ GK + ++E E R T+ LI Y K
Sbjct: 400 MKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGK 459
Query: 404 R 404
R
Sbjct: 460 R 460
>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
Length = 661
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/284 (17%), Positives = 110/284 (38%), Gaps = 13/284 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ + + PD T AL+ G + EA+ + +E+L + ++
Sbjct: 345 AQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIY 404
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ + F++ + D ++ P+V ++ I + + +++ L+E+ RG
Sbjct: 405 GFCKHNRFDDAKHMFDLMAS------PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 458
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
++ T N I + +L + + + D + + + + K E
Sbjct: 459 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 518
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
+ + + DL + +N+++ K+ F + G PD+ T+N+ F
Sbjct: 519 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 578
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTY-----GCVVDAYLDKRL 339
S D ++ MK PD TY GC+ +DK +
Sbjct: 579 GKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSI 622
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 55/292 (18%), Positives = 114/292 (39%), Gaps = 20/292 (6%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++V + + A L++ ++ + PD A++ +G +AQ ++ E+L
Sbjct: 260 GTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE 319
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR--NADLLPEVYSRAISCFGKQGQL 165
+V + ++D + G +++ ++ + R N D+L ++ IS K+G+L
Sbjct: 320 KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVL--TFNALISASVKEGKL 377
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID-KEGIRA 224
E EM+ R D+ T N+ I + + + R ++H+ D
Sbjct: 378 FEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK----------HNRFDDAKHMFDLMASPDV 427
Query: 225 VSF-----TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
V+F Y + ++ + LR++ +N L+ + + + Q F
Sbjct: 428 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQE 487
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M G PD T NI F + E ++ + D V Y ++
Sbjct: 488 MISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIII 539
>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/319 (21%), Positives = 128/319 (40%), Gaps = 39/319 (12%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ R+K +++ ++S G+ P T L+ + G + + + V++E+ +
Sbjct: 174 LLDTYTRQKNDARVAEVLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKN 233
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V S +++AY R G + D+ + Y I+ F K GQ+E E
Sbjct: 234 VAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAE 293
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT---EMETAYGRL---------------- 210
L +M RG + N I Y R G + E++ R+
Sbjct: 294 MLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGL 353
Query: 211 ---------KRSRHLIDKEGIRA--VSFTYL-----KERKFFMLGEFLRDV-GLGRKDLG 253
K+ H++ + G+ + VS+T L KE RD+ G G +
Sbjct: 354 CRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRP-S 412
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL- 312
+ +N+++ Y + ++ +R M + G PD+ T+ V ++ D+ L L
Sbjct: 413 VVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAA-LVHGHCVNGKVDVALRLF 471
Query: 313 EHMKHESVGPDLVTYGCVV 331
E MK P++V Y ++
Sbjct: 472 EEMKQRGAKPNVVAYTALI 490
>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
Length = 465
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/269 (19%), Positives = 111/269 (41%), Gaps = 16/269 (5%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G P++ T AL+ ++ G + + + E + + +V + L++ ++ ++E
Sbjct: 5 GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEA 64
Query: 134 ISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
++ + R P++ YS +S + K G++E LKE++SRG D+ +
Sbjct: 65 EELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDA------L 118
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRD 244
+Y SL + L+ +I + G T+ +E+ M L+
Sbjct: 119 MYTKVVASLCKSARLGEALELLEEMI-RAGCCPTLITFNTLISGCCREKNLEMADSLLQK 177
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ + +N L+ +++ ++ RM +G PD+ ++ +
Sbjct: 178 MAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGK 237
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
D H LE M+ P++VTY ++D
Sbjct: 238 VLDAHQVLEQMRDSHHDPNVVTYNTILDG 266
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 22/283 (7%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A++L N + G+ PD ST L+ G V E++ + ++L ++ + +
Sbjct: 200 AYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQ 259
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
R G + +S++D V L P+V Y+ I K + E L ++V+ G
Sbjct: 260 GLCRKGMLSGAMSMLDSVI--REGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGL 317
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK-ERKFFMLG 239
D T N I Y + G L E K + I K G FTY
Sbjct: 318 EPDGFTYNTLIDGYCKMGMLQNAE------KILQGAICK-GFVPDEFTYCSLINGLCQND 370
Query: 240 EFLRDVGLGRKDLGN------LLWNLLL--LSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
E R + L LG +L+N+L+ L G +++LQ MSE G D+ T
Sbjct: 371 EIDRALALFNAALGKGLKPTVILYNMLIKGLCQEG-LILQALQM-MNEMSENGCSSDIWT 428
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+N+ +M D + + + PD+ T+ ++D Y
Sbjct: 429 YNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGY 471
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 125/301 (41%), Gaps = 33/301 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL--MLCYANNGFVLEAQVVWEELL 106
S++ LG+K+K A L +K + P++ST + MLC G V EA + +E+
Sbjct: 93 SILTCLGKKRKVDEALSLFEVMKKDAE-PNSSTYNIIIDMLCLG--GRVEEAYRILDEME 149
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+S ++ ++ ++D + E I + S R + Y I GK+GQ++
Sbjct: 150 HASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVD 209
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR--- 223
++M+ G NA + Y+ SL +GR K H I KE IR
Sbjct: 210 EAYRLFEKMLDAGH-------NANPVVYT---SLIRNFFIHGR-KEDGHKIFKELIRRGC 258
Query: 224 ----AVSFTYL-------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
+ TY+ + K M+ E +R G D+ + +++L+ + +
Sbjct: 259 KPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGF-LPDVRS--YSILIHGLTKAGQARE 315
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
F M + GF D +N F + + LE MK + V P + TYG +VD
Sbjct: 316 TSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVD 375
Query: 333 A 333
Sbjct: 376 G 376
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 48/239 (20%)
Query: 35 IIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
I KQ+GF A ++V+ + K H A++++ +K + + P +T A++ A
Sbjct: 319 IFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLA 378
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
+ EA +++EE S L+V + S L+D +G++G +E I++++ + L P
Sbjct: 379 KIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG--LTPN 436
Query: 151 VYS---------------RAISCFGKQGQLELMENTL----------------------K 173
VY+ A+ CF +++ NT +
Sbjct: 437 VYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQ 496
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
+M +G + T I ++ G++T+ + + R K + + D A SF L E
Sbjct: 497 DMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD-----AASFNALIE 550
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 130/315 (41%), Gaps = 22/315 (6%)
Query: 32 ARKIIRYRKQEGF-VDC---ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A KI Q G DC SL++ LG+K + A++L + G + +L+
Sbjct: 176 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 235
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ +G + +++EL+ + +L+ MD + G + I + + R+
Sbjct: 236 NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDI--RSYGF 293
Query: 148 LPEVYSRAISCFG--KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS------ 199
LP+V S +I G K GQ N M +GF++D+ NA + + + G
Sbjct: 294 LPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYE 353
Query: 200 -LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
L EM+ + + + +G+ + + + +ML E + G+ +L +L++
Sbjct: 354 ILEEMKEKCVQPTVATYGAIVDGLAKID----RLDEAYMLFEEAKSKGI---ELNVVLYS 406
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
L+ + ++ M + G P++ T+N A + + + + MK
Sbjct: 407 SLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEM 466
Query: 319 SVGPDLVTYGCVVDA 333
P+ TY +++
Sbjct: 467 KCPPNTYTYSILING 481
>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
Length = 321
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 113/280 (40%), Gaps = 21/280 (7%)
Query: 67 VNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126
+ TV + G+L D LC AN + +A + E + + V + +MDA +
Sbjct: 7 IPTVVTFGILVDG-------LCKANR--LTDAFELVEVMAERGCFPNALVFNGIMDALCK 57
Query: 127 IGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
G E I+ + R+ + P + Y+ I F K+ +L L+EM RG +
Sbjct: 58 EGRSAEAYGYIETM--RSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNH 115
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLGEF 241
T N F+ ++G + + + + + +D G + + K + L +
Sbjct: 116 VTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDE 175
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ + G K +N +L ++ + F RM+ +G PD TF + + R
Sbjct: 176 MENSGCVPKPG---CYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCR 232
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
D L L+ MK + P V Y ++DA R GR
Sbjct: 233 GHRIDDALLLLQQMKSAGLAPREVIYNTLIDAL--NRAGR 270
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 120/303 (39%), Gaps = 36/303 (11%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV---VWEELL 106
L+ L + K+ A ++ N + +GL T C L+L V E +V V +E++
Sbjct: 267 LIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCK---VQEFEVGAGVMDEMI 323
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
FV + LS L++ R G + ++++V + +P VY+ I+ K G+
Sbjct: 324 ELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRV--KKVGAMPSLFVYNALINSLCKDGK 381
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
+ E KEM +G + T + I + R G L G++ + GI+
Sbjct: 382 FDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMA-------GIKI 434
Query: 225 VSFTY-------------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+ Y FF + + D GL + + L+ Y K+
Sbjct: 435 TVYPYNSLINGHCKLGNLSAAVSFF---DEMIDKGLKPTVVS---YTSLISGYCNKGKLH 488
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
R + M+ G P+ TF A R + D + M +++ P+ VTY ++
Sbjct: 489 EAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMI 548
Query: 332 DAY 334
+ +
Sbjct: 549 EGH 551
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 111/283 (39%), Gaps = 29/283 (10%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+N + +GL+PD T L+ + G V EA+ ++L F L+ S L+
Sbjct: 560 AFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLH 619
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y + G + + + ++ R D+ Y+ I K+ + LK M +
Sbjct: 620 GYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRP 679
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D + I YS+ GS+ + A+G ++ EG TY ++ E
Sbjct: 680 DKVIYTSMIDGYSKAGSV---KKAFGIWD----IMIDEGCTPNIVTYTT-----LINELC 727
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFK------MKSLQREFMRMSEAGFHPDL------- 289
+ G D LLW +L+S + + L RE H D+
Sbjct: 728 K---AGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLAN 784
Query: 290 -TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
++NI F ++ + L+ M ++ PD +TY ++
Sbjct: 785 TVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTII 827
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 7/182 (3%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SLVE L RK K A LVN VK G +P AL+ +G EA+++++E+
Sbjct: 335 SSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGE 394
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ S L+D++ R G + I + ++ + Y+ I+ K G L
Sbjct: 395 KGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSA 454
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ EM+ +G + + I Y G L E Y H + +GI ++
Sbjct: 455 AVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLY-------HEMTGKGIAPNTY 507
Query: 228 TY 229
T+
Sbjct: 508 TF 509
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/310 (20%), Positives = 127/310 (40%), Gaps = 9/310 (2%)
Query: 32 ARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
AR ++ K++G +LV R A ++V ++ + G PD T L +
Sbjct: 262 ARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAV 321
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLS-VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
G V EA + +E+ S L V + L+DA + C ++ + +++++ R+
Sbjct: 322 GLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEM--RDKG 379
Query: 147 LLPEVYSR--AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
+ P + + + K+G+LE L+++ G + D T N I Y + G++ +
Sbjct: 380 VKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAF 439
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
T + +D + V + K +++ E L + + ++ +Y
Sbjct: 440 TLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAY 499
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
+ + R + +M E P ++T+N RM + L + + + PD
Sbjct: 500 FKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDE 559
Query: 325 VTYGCVVDAY 334
TY ++ AY
Sbjct: 560 TTYNIIIHAY 569
>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 666
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/284 (17%), Positives = 110/284 (38%), Gaps = 13/284 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ + + PD T AL+ G + EA+ + +E+L + ++
Sbjct: 350 AQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIY 409
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ + F++ + D ++ P+V ++ I + + +++ L+E+ RG
Sbjct: 410 GFCKHNRFDDAKHMFDLMAS------PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 463
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
++ T N I + +L + + + D + + + + K E
Sbjct: 464 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 523
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
+ + + DL + +N+++ K+ F + G PD+ T+N+ F
Sbjct: 524 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 583
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTY-----GCVVDAYLDKRL 339
S D ++ MK PD TY GC+ +DK +
Sbjct: 584 GKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSI 627
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 55/292 (18%), Positives = 114/292 (39%), Gaps = 20/292 (6%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++V + + A L++ ++ + PD A++ +G +AQ ++ E+L
Sbjct: 265 GTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE 324
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR--NADLLPEVYSRAISCFGKQGQL 165
+V + ++D + G +++ ++ + R N D+L ++ IS K+G+L
Sbjct: 325 KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVL--TFNALISASVKEGKL 382
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID-KEGIRA 224
E EM+ R D+ T N+ I + + + R ++H+ D
Sbjct: 383 FEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK----------HNRFDDAKHMFDLMASPDV 432
Query: 225 VSF-----TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
V+F Y + ++ + LR++ +N L+ + + + Q F
Sbjct: 433 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQE 492
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M G PD T NI F + E ++ + D V Y ++
Sbjct: 493 MISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIII 544
>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Brachypodium distachyon]
Length = 968
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 120/267 (44%), Gaps = 13/267 (4%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
D TL AL+L N+G + EA + E++++ +F+ + + L+ + R G + ++
Sbjct: 463 DQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILL 522
Query: 138 DQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSR-GFSVDSATGNAFIIYY 194
+ L+P++ Y+ + K+GQ++ +E++ + G D N+ + Y
Sbjct: 523 QMM--LEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNSMMNGY 580
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE----RKFFMLGEFLRDVGLGRK 250
+ G L ++E + +++ + + ++K+ R ++ + +R G K
Sbjct: 581 LKAGKLHKVEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRK---GIK 637
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
N+ + LL+L + + ++ + +M G +PD +F++ AFS S D
Sbjct: 638 PT-NVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQ 696
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLDK 337
MK + P TY +++ + K
Sbjct: 697 LFNCMKWLYMSPSSKTYSAMINGLIRK 723
>gi|449445049|ref|XP_004140286.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Cucumis sativus]
gi|449531474|ref|XP_004172711.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Cucumis sativus]
Length = 726
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 82/175 (46%), Gaps = 3/175 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+V L R + + A ++ N +K+ + P+++T +LC+ G + EA +++
Sbjct: 512 MVGALHRYGQANKALEIYNDMKNSNIEPNSTTYSIALLCFVEIGKIQEACASHNKIVELG 571
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF--GKQGQLEL 167
V S+ L + +I N ++ ++ N + P+ + A++ K G+ E+
Sbjct: 572 SVPSIAAYCSLSEGLFKICEINAVMMLVRDC-LANIESGPQEFKYALTIVHACKSGKAEM 630
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
+ + LKEMV + S +A I S++G+L E + + L+ + L + I
Sbjct: 631 VIDVLKEMVLQDCVPSSVAYSAIISGMSKYGTLDEAKKVFLHLRERKQLTEANCI 685
>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL +I + + SL+ L + + A L+ +K EG+ PD ST L+
Sbjct: 390 DLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGL 449
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
NG + +AQ ++++LL + L++++ + +++ + G F+E +S++ Q+ + +P
Sbjct: 450 CKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQM--EDNGCMP 507
Query: 150 E--VYSRAISCFGKQGQLELMENTLKEMVSR 178
+ Y IS K + L+EM++R
Sbjct: 508 DAVTYETLISALFKNNKNGKAVKLLREMIAR 538
>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
Length = 1096
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 21/343 (6%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
T+S ++G K RF ++ +I R + ++L+ + R
Sbjct: 440 TYSALINGFCKVGRFKTAK--------EIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKE 491
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + EG D+ T L+ G V EA+ + S + + L++
Sbjct: 492 AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLIN 551
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
YG G + S+ D+++ Y + K G L E LK + + +V
Sbjct: 552 GYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAV 611
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ N + + G+L + + +G + + L D ++ ++ K + F
Sbjct: 612 DTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFA 671
Query: 243 RDVGLGRKDLGNLLWNLLLLSY-------AGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
++ + GN+L N ++ + AG +K RE +M G PD+ T N
Sbjct: 672 KEA----EARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFRE--QMDNLGHTPDIVTTNAM 725
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+SRM + L M +++ GP+L TY ++ Y ++
Sbjct: 726 IDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRK 768
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 54/288 (18%), Positives = 106/288 (36%), Gaps = 6/288 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ DL R + + L+ ++ + P+ T L+ ++N G VL A + E+LS
Sbjct: 269 LIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFG 328
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+D + G F E + + + + Y + K + +L
Sbjct: 329 LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLAR 388
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
M G V T I + G L E + + D A+ +
Sbjct: 389 GFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGF 448
Query: 230 LKERKFFMLGEF---LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K +F E + VGL ++++ L+ + +K R + M G
Sbjct: 449 CKVGRFKTAKEIVCRIYRVGLSPN---GIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHT 505
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D TFN+ + + + + M + + P+ V++ C+++ Y
Sbjct: 506 RDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGY 553
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/312 (20%), Positives = 124/312 (39%), Gaps = 34/312 (10%)
Query: 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157
A V+ E++++ + S L+ A + NE +SI+DQ++ Y+ IS
Sbjct: 614 AAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIIS 673
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
K+G+ + ++ EM+S G + T FI Y + G + E E G ++R
Sbjct: 674 EMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTP 733
Query: 218 D------------KEGIRAVSFTYLKE-----------RKFFMLGEFLRDVGLGRKDLGN 254
D G +F+ LK + +L FL+ + +
Sbjct: 734 DVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDT 793
Query: 255 L-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+WN + L N + L+ RM + G +P + T++ F + + + + L+
Sbjct: 794 SGMWNWIEL----NMVWQLLE----RMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLD 845
Query: 314 HMKHESVGPDLVTYGCVVDAYLDKRL-GRNLDFGLSKMNLDDSPVVSTDPYVFEAF-GKG 371
HM + + P+ Y ++ D +L G+ + F + P + + Y+ +G
Sbjct: 846 HMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEG 905
Query: 372 DFHSSSEAFLEF 383
D+ + F +
Sbjct: 906 DYDRAKSLFCDL 917
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 126/320 (39%), Gaps = 41/320 (12%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
+++R Q V +L+ + + + A+ L + G+ PD T A + G
Sbjct: 139 EMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTG 198
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN--ADLLPEV 151
+ +A ++EE+ + VL+ L+DA+ + G + + +++ R ADL+
Sbjct: 199 RIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLV--A 256
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL-TEMETAYGRL 210
Y+ ++ F + ++ + ++EM G D T I + G L T ME
Sbjct: 257 YNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEM----- 311
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+ + EG+ TY + G LS AG +
Sbjct: 312 ---KQEMSDEGVALDDVTYTA----LISG----------------------LSKAG--RS 340
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+R M EAG PD TT+ + AF + L+ M+++ P +VTY V
Sbjct: 341 VDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVV 400
Query: 331 VDAYLDKRLGRNLDFGLSKM 350
++ + +N D L+ M
Sbjct: 401 MNGFCSLGQMKNADMLLNAM 420
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 119/298 (39%), Gaps = 16/298 (5%)
Query: 27 KNGDLARKIIRYRKQEGFVDCAS----LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
K D K+ R + G V A LV+ + K LA +L + S G+LPD T
Sbjct: 372 KRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTY 431
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
L+ +NG + +A ++E+L S L + + + +++ + G + ++ + C
Sbjct: 432 GILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPC 491
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ Y+ IS K+G L L++M G + + T N I + R G LT
Sbjct: 492 KGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTA 551
Query: 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+K D I+ V L K L L R+D LL
Sbjct: 552 SAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQD---------LL 602
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
+G+ K++ F++M + T+ N+ + M+ +L+ L ++ SV
Sbjct: 603 ELSGSEKIRLSSLTFVKMFPC--NTITTSLNVNTIEARGMNS-AELNRDLRKLRRSSV 657
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 128/329 (38%), Gaps = 44/329 (13%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L +++ Q V S+V + R LA L+ ++ + D T ++
Sbjct: 170 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLC 229
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
+G + A +++E+ + SV + L+ + G +N+ ++ + R +++P
Sbjct: 230 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR--EIVPN 287
Query: 151 V--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
V ++ + F K+G+L+ KEM++RG S + T N + Y L+E
Sbjct: 288 VITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLD 347
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+ R++ D V+FT L + Y
Sbjct: 348 LMVRNKCSPD-----IVTFTSL------------------------------IKGYCMVK 372
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
++ + F +S+ G + T++I F + + M V PD++TYG
Sbjct: 373 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 432
Query: 329 CVVDAYLDK-RLGRNL----DFGLSKMNL 352
++D D +L + L D SKM+L
Sbjct: 433 ILLDGLCDNGKLEKALEIFEDLQKSKMDL 461
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/280 (18%), Positives = 107/280 (38%), Gaps = 37/280 (13%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
R K A+ ++ V G PD +T L+ G V EA V+ + ++ + V
Sbjct: 125 RCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVV 184
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
+ +++ R G + + ++ ++ RN YS I + G ++ + KEM
Sbjct: 185 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 244
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
++G T N+ + + G + G L
Sbjct: 245 ETKGIKSSVVTYNSLVRGLCKAGKWND-----GAL------------------------- 274
Query: 236 FMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
L+D+ + R+ + N++ +N+LL + K++ + M G P++ T+N
Sbjct: 275 -----LLKDM-VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 328
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + + + L+ M PD+VT+ ++ Y
Sbjct: 329 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 368
>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
Length = 1090
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/292 (18%), Positives = 120/292 (41%), Gaps = 14/292 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ L R K+ A L+ ++ + L PD T L+ + G + A+ V+ +L +
Sbjct: 230 MIDKLCRIKRSARAFLLLKRMRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQT 289
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V SV + ++D Y R ++ +S++ ++ YS ++ + K L
Sbjct: 290 LVPSVATYTTMIDGYCRNRRIDKALSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPAL 349
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+ + ++ SRG +++ I + + G ++ + K+ + ++GI TY
Sbjct: 350 DLMVDLKSRGITINKTMCTILIDGFCQVGEIS-------KAKQILKSMLEDGIDPDVVTY 402
Query: 230 -------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ K E L + ++L+ L+ Y +K + F+ +
Sbjct: 403 SALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKVALKHFVDIYR 462
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G + N AF R M + ++M ++ + V++ C++D+Y
Sbjct: 463 RGLVANPVIHNALLRAFYREGMITEAEHFRQYMSRMNISFNSVSFNCIIDSY 514
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 119/315 (37%), Gaps = 49/315 (15%)
Query: 32 ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A++I++ ++G V ++L+ + R K H ++++ ++ G+LP++ L+
Sbjct: 383 AKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLIC 442
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
Y G+V A L +D Y R N
Sbjct: 443 YYCKAGYVKVA------------------LKHFVDIYRRGLVAN---------------- 468
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
P +++ + F ++G + E+ + M S +S + N I Y G + E + Y
Sbjct: 469 -PVIHNALLRAFYREGMITEAEHFRQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSVY 527
Query: 208 GRLKRSRHLID----KEGIRAVS-FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+ R H + + +R + +L + K FM + K +N LLL
Sbjct: 528 DDMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAVDEKT-----FNALLL 582
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
+ +M + PD+ T+ I F R + L+ M + V P
Sbjct: 583 GICKYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKGKILPALVMLQMMLEKGVVP 642
Query: 323 DLVTYGCVVDAYLDK 337
D V Y C+++ +++
Sbjct: 643 DTVAYTCLLNGLINE 657
>gi|125556718|gb|EAZ02324.1| hypothetical protein OsI_24426 [Oryza sativa Indica Group]
gi|125598467|gb|EAZ38247.1| hypothetical protein OsJ_22623 [Oryza sativa Japonica Group]
Length = 478
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 121/322 (37%), Gaps = 35/322 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E L LA +L+ + +G+ + T L+ YA G + ++ V E+
Sbjct: 126 ALLEGLLSTAHLRLADRLLLQMADDGVARNRRTYMLLLNAYARAGRLEDSWWVLGEMKRR 185
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
L S L+ Y G + + +I ++ +L ++Y+ I FGK GQL
Sbjct: 186 GIRLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGVELDVKIYNGLIDTFGKYGQLADA 245
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSR----------FGSLTEM--------------- 203
+M + G D T N+ I ++ R F ++ E
Sbjct: 246 RKVFDKMCAEGVKPDITTWNSLIRWHCRVGNTKRALRFFAAMQEEGMYPDPKIFVTIISR 305
Query: 204 ---ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV-----GLGRKDL--G 253
+ + +K+ H + G++ Y + RD L ++L
Sbjct: 306 LGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYGHFRDAHDCVAALKAENLQLS 365
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
++ +L +YA + M G P+L N+ AF + L+
Sbjct: 366 PSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLNLLINAFGTAGRHLEALAVLQ 425
Query: 314 HMKHESVGPDLVTYGCVVDAYL 335
H+K + PD+VTY ++ A++
Sbjct: 426 HIKDSGMSPDVVTYTTLMKAFM 447
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 64/167 (38%)
Query: 69 TVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG 128
++ EG+ PD ++ G E + ++ + + S V + L+D YG+ G
Sbjct: 286 AMQEEGMYPDPKIFVTIISRLGEQGKWDEIKKLFHGMRNRGLKESGAVYAVLVDIYGQYG 345
Query: 129 CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN 188
F + + + N L P ++ + + +QG E N L+ M + G + N
Sbjct: 346 HFRDAHDCVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVNVLQLMEAEGIEPNLVMLN 405
Query: 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235
I + G E +K S D + +++ +KF
Sbjct: 406 LLINAFGTAGRHLEALAVLQHIKDSGMSPDVVTYTTLMKAFMRAKKF 452
>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
Length = 1274
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 21/343 (6%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
T+S ++G K RF ++ +I R + ++L+ + R
Sbjct: 440 TYSALINGFCKVGRFKTAK--------EIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKE 491
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + EG D+ T L+ G V EA+ + S + + L++
Sbjct: 492 AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLIN 551
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
YG G + S+ D+++ Y + K G L E LK + + +V
Sbjct: 552 GYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAV 611
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ N + + G+L + + +G + + L D ++ ++ K + F
Sbjct: 612 DTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFA 671
Query: 243 RDVGLGRKDLGNLLWNLLLLSY-------AGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
++ + GN+L N ++ + AG +K RE +M G PD+ T N
Sbjct: 672 KEA----EARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFRE--QMDNLGHTPDIVTTNAM 725
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+SRM + L M +++ GP+L TY ++ Y ++
Sbjct: 726 IDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRK 768
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 54/288 (18%), Positives = 106/288 (36%), Gaps = 6/288 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ DL R + + L+ ++ + P+ T L+ ++N G VL A + E+LS
Sbjct: 269 LIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFG 328
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+D + G F E + + + + Y + K + +L
Sbjct: 329 LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLAR 388
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
M G V T I + G L E + + D A+ +
Sbjct: 389 GFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGF 448
Query: 230 LKERKFFMLGEF---LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K +F E + VGL ++++ L+ + +K R + M G
Sbjct: 449 CKVGRFKTAKEIVCRIYRVGLSPN---GIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHT 505
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D TFN+ + + + + M + + P+ V++ C+++ Y
Sbjct: 506 RDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGY 553
>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
Length = 806
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 125/325 (38%), Gaps = 33/325 (10%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L K A +++ T+ ++G+ D+ T ++ + + EA + ++
Sbjct: 472 ALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRR 531
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
F + + L+ AY +G E ++DQ+ + L P++ Y I K +
Sbjct: 532 GFKPDLFTFNTLLHAYCNLGKMEETFHLLDQM--KTEGLQPDIVSYGTIIDGHCKAKDIR 589
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ L E++ RG + NA I Y R G ++ A +K + GI+ +
Sbjct: 590 KAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSN-------GIQPTN 642
Query: 227 FTY------------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
TY ++E K +V DLG + + +++ Y KM
Sbjct: 643 VTYGSLMYWMCHAGLVEEAKTIFSQARENNV-----DLGVIGYTIMIQGYCKLGKMVEAV 697
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG-----C 329
F M G P+ T+ A+S+ + + M V PD +TYG C
Sbjct: 698 AYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARC 757
Query: 330 VVDAYLDKRLGRNLDFGLSKMNLDD 354
LDK +G + + DD
Sbjct: 758 SEVNSLDKDIGHTAELSSGALTKDD 782
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 9/171 (5%)
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE- 220
QG L + + + SRG T NAF+ R G L + ++ SR++ E
Sbjct: 163 QGSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEY 222
Query: 221 ----GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276
I+A+ + F ML E R GL + +N+L+ + + +++ R
Sbjct: 223 SYTAMIKALCKAGKVDAGFEMLAELWR-AGLQPT---VVTYNVLMDALCKSGRVEEAFRL 278
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
RM + G P + TF I +R F ++ + L+ M+ V P+ V Y
Sbjct: 279 KGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIY 329
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 19/199 (9%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSV--DSATGNAFIIYYSRFGSLTEMETAYG 208
Y+ + F K+G+ + + LKEM +RG + T N I +R G L E
Sbjct: 239 TYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVE 298
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR---DVGLGRKDLGNL----LWNLLL 261
++ S+ +A SFTY + F++ D+ L ++ G + +N ++
Sbjct: 299 GMRLSK--------KASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMI 350
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
+ ++++ Q +F+ M G PD+ T+N + + + L ++H +
Sbjct: 351 HGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLA 410
Query: 322 PDLVTYGCVVDAYLDKRLG 340
P ++TY ++D Y RLG
Sbjct: 411 PTVLTYNILIDGYC--RLG 427
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 113/280 (40%), Gaps = 30/280 (10%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+++EG++P T A++ +G V AQV + E+ + V + L++ Y + G
Sbjct: 334 MENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGS 393
Query: 130 FNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
E + + + R+A L P V Y+ I + + G LE +EMV +G D T
Sbjct: 394 LKEALLLFGDL--RHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCT- 450
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTY-LKERKFFMLGEF-- 241
+ L + L +R D+ +G++ F Y + R LG
Sbjct: 451 ---------YTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAK 501
Query: 242 ---LRDV-GLGRKDLGNLLWNLLL--LSYAGNFK-MKSLQREFMRMSEAGFHPDLTTFNI 294
LR+V L + +N+L+ L GN K LQ M+M G PD T+
Sbjct: 502 AFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQ---MKMVHNGLQPDCITYTC 558
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
A + + + M + + P VTY + AY
Sbjct: 559 LIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAY 598
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 16/255 (6%)
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
LC A G + EA W + +V+ + L+ A G E +S+ ++ R +
Sbjct: 265 LCEA--GKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCE 322
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
Y+ I K+G+++ L EMV +G + NA I Y + G ME A
Sbjct: 323 PNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGM---MEDA 379
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL-RDVGLGRKDLGNLL------WNL 259
G L L++ + + TY + F G+ + R + L K + + L +N
Sbjct: 380 VGVLG----LMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNT 435
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
L+ + S R F M GF PD TFN V RM + H LE +K +
Sbjct: 436 LIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKH 495
Query: 320 VGPDLVTYGCVVDAY 334
V + Y ++D Y
Sbjct: 496 VKANEHAYTALIDGY 510
>gi|449530158|ref|XP_004172063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Cucumis sativus]
Length = 608
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 81/182 (44%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++V +K + + CA++ YA A V+E+L+ + ++
Sbjct: 349 ALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAIN 408
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
AY R+G +++ I ++ + D YS IS +GK G+L+ L +M +G
Sbjct: 409 AYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQP 468
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
+ N + + + +L ++E + +KR + DK ++ Y+K +F ++
Sbjct: 469 NVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYY 528
Query: 243 RD 244
R+
Sbjct: 529 RE 530
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 128/315 (40%), Gaps = 19/315 (6%)
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP---EVYSRAI 156
+V++ L S+ +M+AY ++G ++ + ++V R +D P ++Y
Sbjct: 208 MVFQRLKSARIEADSGCYCRVMEAYLKLGDSERVMELFNEVESRISDSTPFSTKIYGILC 267
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
K G++ ++M +G + D +A I ++ + E Y K + L
Sbjct: 268 ESLAKSGRVFESLEFFRDMRKKGIAEDYTIYSALICTFASIQEVKLAEDLYNEAKAKKLL 327
Query: 217 IDKEGIRAVSFTYLKE---RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
D + Y+++ K + E ++D +G D ++ ++ YA ++
Sbjct: 328 RDPAMFLKLILMYVQQGSLEKALEIVEVMKDFKIGVSD---CIFCAIVNGYATRRGYEAA 384
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + ++ E G P T+ A+ R+ ++ M+ + +V Y ++
Sbjct: 385 VKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISM 444
Query: 334 YLDKRLGRNLDFG--LSKMNLDD-SPVVSTDPYVFEAFGKG-DFHSSSEAFLEFKRQR-- 387
Y + GR D L+KM P V + E GK + + + E KR++
Sbjct: 445 Y--GKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIA 502
Query: 388 --KWTYRKLIAVYLK 400
K +Y +I+ Y+K
Sbjct: 503 PDKVSYTSIISAYVK 517
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 6/223 (2%)
Query: 43 GFVDC--ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100
G DC ++V ++ A ++ + +G P T + + Y G +A+
Sbjct: 362 GVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSKAED 421
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160
++ E+ F V S L+ YG+ G + + ++ ++ + +Y+ + G
Sbjct: 422 IFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHG 481
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K L+ +E KEM + + D + + I Y + + E Y + + IDK
Sbjct: 482 KAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKA 541
Query: 221 --GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
GI F+ K + L + LRD+ L L L+ L
Sbjct: 542 FGGIMVGVFS--KTSRVDELVKLLRDMKLEGTRLDERLYRTAL 582
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 107/272 (39%), Gaps = 39/272 (14%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
++ + SEG +P T +++ + G + A V++++ ++ + +D Y
Sbjct: 528 MLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYC 587
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
R GC + + +++ V R L P++ Y+ I+ F ++G + L ++ G + +
Sbjct: 588 RTGCSDMALKMLNDV--RRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPN 645
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
+ N+ I Y + E+ Y + K GI A + TY ++ F +
Sbjct: 646 TVVYNSLITGYKNLNMMKEVSKFYESMI-------KGGIVADTSTYTT-----LIDGFSK 693
Query: 244 DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
D GN+ + L L S M G+ PD TF R
Sbjct: 694 D--------GNVAFALELYS---------------EMMAKGYIPDAFTFTALTHGLCRSG 730
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
LE M+ V P++ Y +++ YL
Sbjct: 731 DIDGAKKLLEEMRRLDVRPNVFIYNMLINGYL 762
>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 683
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 115/288 (39%), Gaps = 10/288 (3%)
Query: 40 KQEGFV-DCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
KQ G + D S L+ GR ++P A ++ ++ E P+ T AL+ Y +NGF+
Sbjct: 250 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFL 309
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
EA ++ ++ +V + L+ A R + +++ R +L Y+ A
Sbjct: 310 AEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSA 369
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I + +LE + M + DS T F I S +++ A LK
Sbjct: 370 IGSYINAAELEKAIALYQSMRKKKVKADSVT---FTILISGSCRMSKYPEAISYLKEMED 426
Query: 216 L---IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
L + KE +V Y K+ + + + + + + +L +Y + K
Sbjct: 427 LSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGK 486
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
F+ M G PD + AF++ ++ + ++ M+ + +
Sbjct: 487 ACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEI 534
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 55/292 (18%), Positives = 117/292 (40%), Gaps = 11/292 (3%)
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+A + +V +A+ ++ E+ S + L++A+GR G + ++++D + A +
Sbjct: 21 HARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDM--LRAAIA 78
Query: 149 PE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P Y+ I+ G G K+M G D T N + Y ++ +
Sbjct: 79 PSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSY 138
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLK----ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+ +K ++ D + + K + + R D+ + L
Sbjct: 139 FELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLY 198
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
S G ++++ + F M G P++ ++N A++ M L +K + P
Sbjct: 199 SVKG--EIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIP 256
Query: 323 DLVTYGCVVDAY-LDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDF 373
D+V+Y C++++Y ++ G+ + L P V T + +A+G F
Sbjct: 257 DVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGF 308
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 105/267 (39%), Gaps = 18/267 (6%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T ++M Y+ G + + V+E +++ ++ + LM AY G +S+
Sbjct: 186 PDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSV 245
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ + + ++P+V Y+ ++ +G+ Q + M + T NA I Y
Sbjct: 246 LGDI--KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAY 303
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIR--AVSFTYL-----KERKFFMLGEFLRDVGL 247
G L E + ++ +++GI+ VS L + +K + L
Sbjct: 304 GSNGFLAEAVEIFRQM-------EQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQS 356
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
+L +N + SY +++ + M + D TF I RMS + +
Sbjct: 357 RGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPE 416
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAY 334
L+ M+ S+ Y V+ AY
Sbjct: 417 AISYLKEMEDLSIPLTKEVYSSVLCAY 443
>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 110/280 (39%), Gaps = 22/280 (7%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
Q + + G +PD+ST A M C ++E +++ +S L+ A
Sbjct: 341 QFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQAL 400
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSV 182
F+E + Q+ LL VYS I C K ++E L EM RG S
Sbjct: 401 LNAQRFSEGDRYLKQMGVDG--LLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISP 458
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-------KERK- 234
+ T N F+ YS G + ++ +L L+ ++F+ + KE K
Sbjct: 459 NLVTFNTFLSGYSVRGDVKKVHGVLEKL-----LVHGFKPDVITFSLIINCLCRAKEIKD 513
Query: 235 -FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
F E L + G+ + + +N+L+ S + F +M E G PDL +N
Sbjct: 514 AFDCFKEML-EWGI---EPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYN 569
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+F +M L+ M + PD TY ++ A
Sbjct: 570 ATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKA 609
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 132/308 (42%), Gaps = 45/308 (14%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L +K+ + + + V ++++ L + K A L N ++++G+ PD T +L+ C
Sbjct: 242 LLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLC 301
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
N G +A + ++ +V S L+DA+ + G E + D++ R+ D P+
Sbjct: 302 NYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PD 359
Query: 151 V--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
+ YS I+ F +L+ ++ + M+S+ + T N I +
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI-------------KGFC 406
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN-LLWNLLL--LSYA 265
+ KR +EG+ E R++ R +GN + +N L+ L A
Sbjct: 407 KAKRV-----EEGM-----------------ELFREMS-QRGLVGNTVTYNTLIQGLFQA 443
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
G+ M Q+ F +M G PD+ T++I + + E+++ + PD+
Sbjct: 444 GDCDMA--QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 501
Query: 326 TYGCVVDA 333
TY +++
Sbjct: 502 TYNIMIEG 509
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 49/285 (17%), Positives = 106/285 (37%), Gaps = 35/285 (12%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ R+ + LA ++ + G PD TL +L+ Y ++ + +A + ++++
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+ +E ++++DQ+ R Y ++ K+G ++L
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLAL 240
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+ LK+M D N I ++ + + + ++ + +GIR FTY
Sbjct: 241 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKM-------ETKGIRPDVFTY 293
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
N L+ + R M E +P++
Sbjct: 294 ----------------------------NSLISCLCNYGRWSDASRLLSNMIERKINPNV 325
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
TF+ AF + + + M S+ PD+ TY +++ +
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 370
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 59/295 (20%), Positives = 118/295 (40%), Gaps = 20/295 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L K A LV+ + G PD T A++ G + A + +++
Sbjct: 190 TLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKG 249
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V + + ++D + ++ ++ +++ + + P+V Y+ ISC G+
Sbjct: 250 KIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKG--IRPDVFTYNSLISCLCNYGRWS 307
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL-KRSRHLIDKEGIRAV 225
L M+ R + + T +A I + + G L E E Y + KRS ID +
Sbjct: 308 DASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS---IDPD----- 359
Query: 226 SFTYLKERKFFMLGEFLRDVG------LGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFM 278
FTY F + + L + + + N++ +N L+ + +++ F
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 419
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
MS+ G + T+N + + M + V PD++TY ++D
Sbjct: 420 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474
>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 732
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 118/299 (39%), Gaps = 3/299 (1%)
Query: 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSF 110
+ DL R+ K A ++ +K G++P+ T A++ Y G + +A +++E+L +
Sbjct: 275 IRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAEL 334
Query: 111 VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMEN 170
+ +V V L+D + + S+ + D VY+ I K G +
Sbjct: 335 LPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMG 394
Query: 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230
L EM S S D T I L E + R+K R ++ +
Sbjct: 395 LLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFC 454
Query: 231 KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
KE + ++ + + ++ L+ Y +K+ + M+ G PD+
Sbjct: 455 KEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVV 514
Query: 291 TFNIRAVA-FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL-DKRLGRNLDFGL 347
T+ A F +M L L M + P+ T+ C+VD + + RL +DF L
Sbjct: 515 TYTTLIDAHFKEANMKEALRL-YSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYL 572
>gi|168045822|ref|XP_001775375.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673320|gb|EDQ59845.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 406
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 134/345 (38%), Gaps = 19/345 (5%)
Query: 38 YRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN----- 92
YR GF + L+ +G+ K+ +A VK G PD S AL+ +
Sbjct: 36 YRLDNGF--HSKLIVTMGKAKQLRMAVWFFKEVKRNGHRPDTSLYNALITAHLQAEDKRI 93
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
GF Q+ E ++ + + L+ ++ ++ +++ Y
Sbjct: 94 GFAKALQLFEEMKTKANCKPDLVTYNILLRGSAQVRDILQVERFFEEMEVEKIHPNLISY 153
Query: 153 SRAISCFGKQGQLELMENTLKEM-VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
+ I +GK G L ME TL M + + D+ T N I Y +ME + +
Sbjct: 154 NGVIGAYGKAGDLVQMEKTLFTMRILKHIKPDTVTSNTLIESYGYGRDFVKMEQVFKSMT 213
Query: 212 RSRHLIDKEGIRAVSFTY-LKERKFFMLGEFLR-DVGLGRKDLGNLLWNL-----LLLSY 264
++ +K+ R + TY + + LGE + + R + N NL L+ Y
Sbjct: 214 AAK---NKQTSRPDAKTYNILMASYARLGEVGKMEWSCSRMEAANFKLNLRSYEILMTGY 270
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
+ S+ F +M +AG P +T N A+ + + F + L P
Sbjct: 271 GEVGAIASMSECFYQMLQAGMQPQKSTLNAMLRAYCKHNCFEEAEELLNDALGWQTRPRT 330
Query: 325 VTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAF 368
+Y ++ AY +R +++ +M + +P +T E+F
Sbjct: 331 SSYLILLRAYAKERRSSDVEMLTERMAKVGIAPCAATFLEALESF 375
>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1603
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 112/282 (39%), Gaps = 20/282 (7%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+++ GLLPD T +L+ Y G + EA +++ +L + +V + L+D Y R+G
Sbjct: 1251 MRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGD 1310
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG--QLELMENTLKEMVSRGFSVDSATG 187
E + +++ + LP V + I G L + EM+S+G D
Sbjct: 1311 LEEARILKEEMGEQGC--LPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAY 1368
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-LKERKFFMLGEFLRDVG 246
N I G + R R ++ EGI + + TY + G
Sbjct: 1369 NTRICAELILGDI-------ARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKE 1421
Query: 247 LGRKDLGN------LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
L K + N + + L+ ++ ++ ++ F M G P TF + A+
Sbjct: 1422 LQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYC 1481
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
R + + M E V P+ +TY ++ A R+GR
Sbjct: 1482 RRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALC--RMGRT 1521
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 114/278 (41%), Gaps = 26/278 (9%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+++EG++P T A++ +G V AQV + E+ + + V + L++ Y + G
Sbjct: 1216 MENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGN 1275
Query: 130 FNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
E + + + R A L P V Y+ I + + G LE +EM +G + T
Sbjct: 1276 LKEALLLFGDL--RRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTY 1333
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-LKERKFFMLGEFLRDVG 246
+ GSL A R L +G++ F Y + +LG+ R
Sbjct: 1334 TILMK-----GSLNVRSLAMAREFFDEML--SKGLQPDCFAYNTRICAELILGDIARAFE 1386
Query: 247 LGRKDL-------GNLLWNLLL--LSYAGNFK-MKSLQREFMRMSEAGFHPDLTTFNIRA 296
L R+ L + +N+L+ L GN K K LQ M+M G PD T+
Sbjct: 1387 L-REVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQ---MKMVSNGLQPDCITYTCLI 1442
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
A + + +M + + P VT+ ++ AY
Sbjct: 1443 HAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAY 1480
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 27/203 (13%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSV--DSATGNAFIIYYSRFGSLTEMETAYG 208
Y+ + F K+G+ + + LKEM +RG + T N I +R G L E
Sbjct: 1121 TYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVE 1180
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR-------DVGLGRKDLGNL----LW 257
++ S+ +A SFTY + G R D+ L ++ G + +
Sbjct: 1181 GMRLSK--------KASSFTY----NPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTY 1228
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
N ++ + +++ Q +F M G PD+ T+N + + + L ++
Sbjct: 1229 NAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRR 1288
Query: 318 ESVGPDLVTYGCVVDAYLDKRLG 340
+ P ++TY ++D Y RLG
Sbjct: 1289 AGLAPTVLTYNILIDGYC--RLG 1309
>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 701
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 110/277 (39%), Gaps = 35/277 (12%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ L K A + + +G P+++T L+ NG + +A +++E
Sbjct: 367 LIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGP 426
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
L S ++D + G +E ISI++Q+ R L P V + I+ F + +LE
Sbjct: 427 GKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAI 486
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
N +EM +G S + N I + +E ++++
Sbjct: 487 NFFREMECKGCSPTIVSYNTLIKGLCKAERFSE-----------------------AYSF 523
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+KE + E+ D+ + +LL+ K++ + + + GF PD+
Sbjct: 524 VKE---MLEKEWKPDM---------ITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDI 571
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
T +NI + D HMK + P+LVT
Sbjct: 572 TMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVT 608
>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 118/290 (40%), Gaps = 45/290 (15%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ L ++ + +A QL + ++ GL P+ T AL+ + + A + ++L+
Sbjct: 299 LIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMG 358
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLEL 167
+ + + L++ ++G N+ ++D++ R + P+ Y+ I + K+G LE
Sbjct: 359 VKPDLVMYNTLLNGLCKVGDVNKARKLVDEM--RMVGMKPDKITYTTLIDGYCKEGDLES 416
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
K M G +D+ A I + R G + + E R+ + + G++
Sbjct: 417 AMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAE-------RTLREMVEAGMKPDDA 469
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA--GNFKMK-SLQREFMRMSEAG 284
TY +++ Y GN KM L +E M G
Sbjct: 470 TY----------------------------TMVIDGYCKKGNVKMGFKLLKE---MQING 498
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
P + T+N+ + + ++ LE M + V PD +TY +++ +
Sbjct: 499 HKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGH 548
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 116/299 (38%), Gaps = 15/299 (5%)
Query: 44 FVDCASLVEDL-GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102
F +C S++ L RK K A + + G N ALM+ Y ++GFV +A +
Sbjct: 117 FQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNFVFDALMIAYWDSGFVSDAIQCF 176
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162
+ +S+F + L+D I + ++ + Y+ I+ F K+
Sbjct: 177 RLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKE 236
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G + + E+ RG + + N I + +L E RLK++ +++ I
Sbjct: 237 GSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEG----FRLKKT---MEENRI 289
Query: 223 RAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
FTY KE + + + ++ + + L+ + ++ S
Sbjct: 290 YPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMN 349
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ +M G PDL +N ++ ++ M+ + PD +TY ++D Y
Sbjct: 350 TYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGY 408
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 14/243 (5%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A V EE+ + F V + L++ Y + G + + + +++S + Y+ I
Sbjct: 272 DAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLI 331
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
F ++GQ++ + V +G D NA I + G +ME AY +
Sbjct: 332 YVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGG---DMERAYEIMAE---- 384
Query: 217 IDKEGIRAVSFTY-LKERKFFMLGEF-----LRDVGLGRKDLGNLL-WNLLLLSYAGNFK 269
++K+ I TY R F +LG L D R +L+ +N L+ Y+
Sbjct: 385 MEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGD 444
Query: 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329
+K R M + GF+P L T+N ++ D ++ M + + PD TY
Sbjct: 445 IKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYIS 504
Query: 330 VVD 332
+++
Sbjct: 505 LIE 507
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 107/271 (39%), Gaps = 19/271 (7%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD-LMDAYGRIGCFNE 132
G+ PD T L+ + G + +A V++E+L+ V V+ + L+ Y +G +
Sbjct: 178 GIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDV 237
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+ + + R + Y+ + + L+EM GFS D T N I
Sbjct: 238 ALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILIN 297
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY------LKERKFFMLGEFLRDVG 246
Y + G+ + + + ++G+RA + TY + + L +V
Sbjct: 298 GYCKEGNEKKALEVFEEMS-------QKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVA 350
Query: 247 LG---RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
+ R D+ +++N L+ S+ M+ M + PD T+N F +
Sbjct: 351 VKKGIRPDV--VMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLG 408
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ ++ M + PDLV+Y ++ Y
Sbjct: 409 RLDEARTLIDEMTKRGIQPDLVSYNTLISGY 439
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 107/276 (38%), Gaps = 44/276 (15%)
Query: 27 KNGDLARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
+N A+K+ +++G V SL+ L K A L + + GL P+ T
Sbjct: 313 ENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTY 372
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII----SIID 138
AL+ + + EA+ + +++ +V + L+DAYG+ G ++ ++D
Sbjct: 373 NALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLD 432
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
C N Y+ I F ++G ++ KEM G D T N + + G
Sbjct: 433 TGVCPNV----STYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKG 488
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
E A RL L++K+G RA TY N
Sbjct: 489 ---ETRKAV-RLLDEMTLMEKKGRRANIVTY----------------------------N 516
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
+L+ + K++ R M E G P+ TT++I
Sbjct: 517 VLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDI 552
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/279 (19%), Positives = 111/279 (39%), Gaps = 40/279 (14%)
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
+++ G + + V++E++ ++V +++ ++G F + +++ +
Sbjct: 200 MLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWG 259
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
Y+ I + K G++ + LKEMV++ + T N I + R ++T +
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAK 319
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ ++R +G++ TY N L+
Sbjct: 320 KVFEEMQR-------QGLQPNVVTY----------------------------NSLINGL 344
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
N K+ +MS G P++ T+N F + M + L+ + + P++
Sbjct: 345 CSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV 404
Query: 325 VTYGCVVDAYLDKRLGRNLD-FGLSKMNLDDS--PVVST 360
+T+ ++DAY + GR D F L M LD P VST
Sbjct: 405 ITFNTLIDAY--GKAGRMDDAFLLRSMMLDTGVCPNVST 441
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 142/353 (40%), Gaps = 27/353 (7%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
TF + ++G K +F K GD+ + + + ++++ + K
Sbjct: 231 TFDVVINGLCKVGKFQ--------KAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFK 282
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+ + ++ + P+ T L+ + + V A+ V+EE+ +V + L++
Sbjct: 283 ADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLIN 342
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
G +E + + D++S L P V Y+ I+ F K+ L+ L ++ RG
Sbjct: 343 GLCSNGKLDEALGLQDKMS--GMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGL 400
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ + T N I Y + G M+ A+ L RS ++D VS F G
Sbjct: 401 APNVITFNTLIDAYGKAG---RMDDAF--LLRS-MMLDTGVCPNVSTYNCLIVGFCREGN 454
Query: 241 FLRDVGLGRKDLGNLL------WNLLLLSYAGNFKMKSLQR---EFMRMSEAGFHPDLTT 291
L ++ GN L +N+L+ + + + R E M + G ++ T
Sbjct: 455 VKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVT 514
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344
+N+ F + + L M + + P+ TY + D ++K ++D
Sbjct: 515 YNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDID 567
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/279 (18%), Positives = 106/279 (37%), Gaps = 14/279 (5%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ T+K + + PD+ T +L+ G + EA ++EE++ S + + L+D
Sbjct: 275 ADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLID 334
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ G + + D++ + Y+ I + + + E +KE+ +G S
Sbjct: 335 GFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISP 394
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-------KERKF 235
D+ T N I Y R + + + + S GI+ TY K+ +
Sbjct: 395 DAITYNILINGYCRCANAKKAFLLHDEMLAS-------GIKPTKKTYTSLLHVLSKKNRM 447
Query: 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
+ + + +++N L+ + N +K M PD TFN
Sbjct: 448 KEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTI 507
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R + + MK + PD +++ ++ Y
Sbjct: 508 MQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGY 546
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/309 (19%), Positives = 130/309 (42%), Gaps = 30/309 (9%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ + +K A L + + GL+P+ T AL+ ++G + A + + + +S
Sbjct: 253 LISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSG 312
Query: 110 FVLSVQVLSDLMDA---YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
V + S L+DA + R+G ++ + Q + ++ VY+ I K G+
Sbjct: 313 LVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEI---VYTSLIDGLCKAGRFA 369
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ ++ +VS+GF D+ T ++ I R L+E + ++G++
Sbjct: 370 AADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMM-------EKGVQPSP 422
Query: 227 FTYLKERKFFMLGEFLRDVGL--GRKDLGNLL----------WNLLLLSYAGNFKMKSLQ 274
TY ++ E +R+VG +K L ++ + + + SY +M+ +
Sbjct: 423 VTYT-----IIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAE 477
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ M + G P+L T+N ++ + + + +HM P+ +Y ++
Sbjct: 478 HMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLL 537
Query: 335 LDKRLGRNL 343
+ K N+
Sbjct: 538 IKKESSNNI 546
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 118/305 (38%), Gaps = 23/305 (7%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
++++G PD ++ G EA+ + + ++ F +V V + L+D Y +G
Sbjct: 168 MQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGD 227
Query: 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
+ + +++ Y+ IS F K +L+ MV G + T A
Sbjct: 228 LELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTA 287
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRH--LIDKEGIRAVSFTYLKERKF-----FMLGEFL 242
I G +++ AY L+ + L+ E +V L + + +LG +
Sbjct: 288 LIQGQCSDG---QLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLI 344
Query: 243 RDVGLGRKDLGNLLWNLLL--LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
+ G K + +++ L+ L AG F + R + GF PD T++
Sbjct: 345 QK---GIK-VNEIVYTSLIDGLCKAGRF--AAADRLMQTLVSQGFVPDAHTYSSLIDGLC 398
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVST 360
R + L L+ M + V P VTY ++D L R + SK LD
Sbjct: 399 RQKELSEAMLVLDDMMEKGVQPSPVTYTIIID-----ELVREVGADGSKKILDKMIAAGI 453
Query: 361 DPYVF 365
P VF
Sbjct: 454 KPDVF 458
>gi|449466949|ref|XP_004151188.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Cucumis sativus]
Length = 608
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 81/182 (44%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++V +K + + CA++ YA A V+E+L+ + ++
Sbjct: 349 ALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAIN 408
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
AY R+G +++ I ++ + D YS IS +GK G+L+ L +M +G
Sbjct: 409 AYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQP 468
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
+ N + + + +L ++E + +KR + DK ++ Y+K +F ++
Sbjct: 469 NVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYY 528
Query: 243 RD 244
R+
Sbjct: 529 RE 530
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 6/223 (2%)
Query: 43 GFVDC--ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100
G DC ++V ++ A ++ + +G P T + + Y G +A+
Sbjct: 362 GVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSKAED 421
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160
++ E+ F V S L+ YG+ G + + ++ ++ + +Y+ + G
Sbjct: 422 IFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHG 481
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K L+ +E KEM + + D + + I Y + + E Y + + IDK
Sbjct: 482 KAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKA 541
Query: 221 --GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
GI F+ K + L + LRD+ L L L+ L
Sbjct: 542 FGGIMVGVFS--KTSRVDELVKLLRDMKLEGTRLDERLYRTAL 582
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 60/315 (19%), Positives = 127/315 (40%), Gaps = 19/315 (6%)
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP---EVYSRAI 156
+V++ L S+ +M+AY ++G ++ + ++V R + P ++Y
Sbjct: 208 MVFQRLKSARIEADSGCYCRVMEAYLKLGDSERVMELFNEVESRISVSTPFSTKIYGILC 267
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
K G++ ++M +G + D +A I ++ + E Y K + L
Sbjct: 268 ESLAKSGRVFESLEFFRDMRKKGIAEDYTIYSALICTFASIQEVKLAEDLYNEAKAKKLL 327
Query: 217 IDKEGIRAVSFTYLKE---RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
D + Y+++ K + E ++D +G D ++ ++ YA ++
Sbjct: 328 RDPAMFLKLILMYVQQGSLEKALEIVEVMKDFKIGVSD---CIFCAIVNGYATRRGYEAA 384
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + ++ E G P T+ A+ R+ ++ M+ + +V Y ++
Sbjct: 385 VKVYEKLIEDGCEPGQVTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISM 444
Query: 334 YLDKRLGRNLDFG--LSKMNLDD-SPVVSTDPYVFEAFGKG-DFHSSSEAFLEFKRQR-- 387
Y + GR D L+KM P V + E GK + + + E KR++
Sbjct: 445 Y--GKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIA 502
Query: 388 --KWTYRKLIAVYLK 400
K +Y +I+ Y+K
Sbjct: 503 PDKVSYTSIISAYVK 517
>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Glycine max]
Length = 647
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LGR K+ H L +K +G PD T L+ + G V A +EEL +S
Sbjct: 448 LGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPD 507
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
V + L++ G+ G +E ++ + L P+V YS I CFGK ++E+
Sbjct: 508 VISYNSLINCLGKNGDVDEAHMRFKEM--QEKGLNPDVVTYSTLIECFGKTDKVEMACRL 565
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
EM++ + + T N + R G E Y +LK ++G+ S TY
Sbjct: 566 FDEMLAEECTPNLITYNILLDCLERSGRTAEAVDLYAKLK-------QQGLTPDSITY 616
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 7/162 (4%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C S++E L K A L+N + +G+ D + + ++E++
Sbjct: 406 CMSMLESLCSAGKMTEAIDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMK 465
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQ 164
+ + L+ ++GR G + + +++ N+D P+V Y+ I+C GK G
Sbjct: 466 QDGPPPDIFTYNILISSFGRAGRVDIAVKFFEEL--ENSDCKPDVISYNSLINCLGKNGD 523
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
++ KEM +G + D T + I FG ++E A
Sbjct: 524 VDEAHMRFKEMQEKGLNPDVVTYSTLI---ECFGKTDKVEMA 562
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS-L 312
+++N + + ++ + + +M + G PD+ T+NI +F R D+ +
Sbjct: 438 TIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRV-DIAVKFF 496
Query: 313 EHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD------SPVVSTDPYVFE 366
E +++ PD+++Y +++ LG+N D + M + +P V T + E
Sbjct: 497 EELENSDCKPDVISYNSLINC-----LGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIE 551
Query: 367 AFGKGD 372
FGK D
Sbjct: 552 CFGKTD 557
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL RKI+ V SL++ LG++K+ A++L + S GL D AL+
Sbjct: 315 DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGL 374
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
G + +A V++ + S V V LS ++D + G + I + R
Sbjct: 375 LQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNE 434
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
VYS I K +++ L +M + D+ T N I
Sbjct: 435 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 476
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 104/269 (38%), Gaps = 39/269 (14%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
AH L + G D T A++ A N + EA + E++ ++ ++ + L++
Sbjct: 243 AHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLN 302
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
++G E I ++ ++ + P+V Y+ I GK+ + KEM SRG
Sbjct: 303 GLCKMGRLEEAIDLLRKIV--DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGL 360
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAY-------------------------GRLKRSRH 215
++D+ A I + G + + + Y GR+ +
Sbjct: 361 ALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVR 420
Query: 216 L---IDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+ ++ G+ Y K RK E L + + +N+L+
Sbjct: 421 IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLC 480
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
+ +++ + F M EAG PD+ T+NI
Sbjct: 481 KSGDVEAARAFFDEMLEAGCKPDVYTYNI 509
>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 121/313 (38%), Gaps = 47/313 (15%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + ++S G++P T C ++ + G V +A+ ++ L SS L + + +++
Sbjct: 379 ATNVFRDMQSAGVVPSLETSCTMINVHGLKGDVKQAEELFRSLRSSVSKLDIIAYNVIIN 438
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYS-----RAISCFGKQGQ------------- 164
Y R G E I + + LLP+ Y+ R Q Q
Sbjct: 439 VYMRYGMHEEAFRIYKLMEEEDG-LLPDSYTYHSMLRMCQKCNLQTQAEEIYWRLRNSDV 497
Query: 165 -------------------LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
LE + +EM+ G ++ T N I Y + G L
Sbjct: 498 ELDEVMCNCVLNTCARFLPLEEVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARD 557
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL---RDVGLGRKDLGNL-LWNLLL 261
A +L + + DK + +Y K++ F + L ++ G G G+L +N +L
Sbjct: 558 A-SKLAQQLGVADKITFSTLINSYGKKQDFRNMEATLWEMQNAGHG----GSLEAYNCVL 612
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
+Y + L+ RM ++G DL ++NI + R + ++ M+ E
Sbjct: 613 DAYGKAGHLDKLEDVIARMEKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFI 672
Query: 322 PDLVTYGCVVDAY 334
PD TY ++ Y
Sbjct: 673 PDRWTYNTMIRTY 685
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 40/264 (15%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
+G+ P T +ML Y NG V +A+V + +L S + V S ++ Y R G F +
Sbjct: 75 KGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGIQV-VAAYSAMIAIYTRCGFFEK 133
Query: 133 IISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
I++ + N + P+ + + ++ +G+QG++E E+ + M G + N+
Sbjct: 134 AEKIMEDM--WNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSM 191
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
I TAYG K G+ Y K + F E +++ GL
Sbjct: 192 I-------------TAYG----------KAGL------YEKALRLF---EKMKEAGL--- 216
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+ + ++ ++ + K++ F M G P + FN + + +
Sbjct: 217 EPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVR 276
Query: 311 SLEHMKHESVGPDLVTYGCVVDAY 334
L MK+ PD T VV AY
Sbjct: 277 VLADMKNFGCTPDSQTLDAVVRAY 300
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 99/258 (38%), Gaps = 38/258 (14%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
V C ++ R H++ + G +P+ T ++ Y +G + A+ +
Sbjct: 502 VMCNCVLNTCARFLPLEEVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARDA-SK 560
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
L V S L+++YG+ F + + + ++ E Y+ + +GK G
Sbjct: 561 LAQQLGVADKITFSTLINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGH 620
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
L+ +E+ + M G +D A+ N I Y R + EME + H + +EG
Sbjct: 621 LDKLEDVIARMEKSGLQMDLASYNILINIYGRHTKIAEMEALF-------HKMQEEGFIP 673
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA-GNFKMKSLQREFMRMSEA 283
+TY N ++ +Y ++ K++ F M ++
Sbjct: 674 DRWTY----------------------------NTMIRTYGYADYPDKAVDT-FKMMQDS 704
Query: 284 GFHPDLTTFNIRAVAFSR 301
G PD T+ + AF +
Sbjct: 705 GIMPDRVTYVMLVAAFEK 722
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 112/269 (41%), Gaps = 11/269 (4%)
Query: 71 KSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
+ +GLLPD+ T +++ +A+ ++ L +S L + + +++ R
Sbjct: 458 EEDGLLPDSYTYHSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPL 517
Query: 131 NEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN 188
E+ I ++ + +P ++ I +GK G L+ + K G + D T +
Sbjct: 518 EEVHKIFQEMI--DVGCIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGVA-DKITFS 574
Query: 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG 248
I Y + ME ++ + H E V Y K L + + +
Sbjct: 575 TLINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKS 634
Query: 249 RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN--IRAVAFSRMSMFW 306
+ +N+L+ Y + K+ ++ F +M E GF PD T+N IR ++ +
Sbjct: 635 GLQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYAD---YP 691
Query: 307 DLHL-SLEHMKHESVGPDLVTYGCVVDAY 334
D + + + M+ + PD VTY +V A+
Sbjct: 692 DKAVDTFKMMQDSGIMPDRVTYVMLVAAF 720
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 118/304 (38%), Gaps = 21/304 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +++ + + + PD M Y G + EA+ + + + L V + ++
Sbjct: 134 AEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSMIT 193
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
AYG+ G + + + + +++ + A L P+ YS I G+ G+L + + M G
Sbjct: 194 AYGKAGLYEKALRLFEKM--KEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGI 251
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE---RKFFM 237
S+ N I Y + ++ + +K D + + AV Y + +K
Sbjct: 252 MPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERAGQTKKVVQ 311
Query: 238 LGEFLRDVGL--GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
+ LR+ G + G LL L N + ++L F M +AG P
Sbjct: 312 VLSLLREAGWVEDTESYGTLLHVYL----KCNLQKEALSV-FSAMRKAGMAPKEYMCRSL 366
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVT-------YGCVVDAYLDKRLGRNLDFGLS 348
A MF D M+ V P L T +G D + L R+L +S
Sbjct: 367 ICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMINVHGLKGDVKQAEELFRSLRSSVS 426
Query: 349 KMNL 352
K+++
Sbjct: 427 KLDI 430
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 124/297 (41%), Gaps = 8/297 (2%)
Query: 41 QEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100
+ V+C L+ + A + + G +PD T L+ G + +A +
Sbjct: 117 KPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFL 176
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL-PEV--YSRAIS 157
+++++ F L+ ++G E + +D + + +L+ P V Y+ I
Sbjct: 177 FHDKVVALGFHFDQISYGTLIHGLCKVG---ETRAALDLLQRVDGNLVQPNVVMYNTIID 233
Query: 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217
K + + EM+S+G S D T +A I + G L + + ++
Sbjct: 234 SMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKP 293
Query: 218 DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQRE 276
D + + K+ K G+ + D+ + + N + +N L+ Y ++ +
Sbjct: 294 DVYTFNILVNAFCKDGKM-KEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSI 352
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
F M++ G +PD+ +++I F ++ F + + M +++ PD+VTY ++D
Sbjct: 353 FNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDG 409
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 65/131 (49%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S+++ L + + A L+ +K +G+ P+ T L+ +G + +A+ V+E LL
Sbjct: 440 SILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVK 499
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
L+V + ++ + G FNE ++++ ++ + Y I K+ + ++
Sbjct: 500 GHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMA 559
Query: 169 ENTLKEMVSRG 179
E L+EM++RG
Sbjct: 560 EKLLREMIARG 570
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 116/279 (41%), Gaps = 8/279 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L N + E + PD T L+ + +G + E + V+ ++ +V LMD
Sbjct: 251 AIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMD 310
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y + N+ SI+ +S R + + Y+ I F K +++ N KEM +
Sbjct: 311 GYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIP 370
Query: 183 DSATGNAFIIYYSRFG----SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
D T N+ I + G +L ++ + R + + A+ + ++ +L
Sbjct: 371 DVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALL 430
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+ L+D G+ R ++ + +L+ +++ F + G++ + T+ +
Sbjct: 431 TK-LKDQGI-RPNM--YTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHG 486
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
F +F + L MK S PD VTY ++ + DK
Sbjct: 487 FCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDK 525
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 50/300 (16%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
HQL+ G P+ T L+ G + +A + + +++ F L L+
Sbjct: 117 PHQLM------GYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIH 170
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLL-PEV--YSRAISCFGKQGQLELMENTLKEMVSRG 179
++G E + +D + + +L+ P V YS I K + + EMVS+G
Sbjct: 171 GLCKVG---ETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKG 227
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTYLKERKFF 236
S + T +A I S F ++ G+LK + L +K E I+ +T+
Sbjct: 228 ISPNVVTYSALI---SGFFTV-------GQLKDAIDLFNKMILENIKPDVYTF-----NI 272
Query: 237 MLGEFLRDVGLGRKDLGNLLWNLLL--------LSYAGNFKMKSLQREFMR-------MS 281
++ F +D G+ G ++ +++ ++Y L +E + MS
Sbjct: 273 LVDGFCKD---GKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMS 329
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
+ G +PD+ ++NI F ++ + + M H+ + PD+VTY ++D +LG+
Sbjct: 330 QRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLC--KLGK 387
Score = 37.7 bits (86), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+S+++ L + + A L+ +K +G+ P+ T L+ G + +A ++E+LL
Sbjct: 411 SSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLV 470
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI---SCFGKQGQ 164
+ ++V + ++ + G F+E ++++ ++ ++ +P+ + I S F K
Sbjct: 471 KGYNITVNTYTVMIHGFCNKGLFDEALALLSKM--KDNSCIPDAVTYEIIIRSLFDKDEN 528
Query: 165 LELMENTLKEMVSRGF 180
+ L+EM++RG
Sbjct: 529 DK--AEKLREMITRGL 542
>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
Length = 321
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 113/280 (40%), Gaps = 21/280 (7%)
Query: 67 VNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126
+ TV + G+L D LC AN + +A + E + + V + +MDA +
Sbjct: 7 IPTVVTFGILVDG-------LCKANR--LTDAFELVEVMGERGCFPNALVFNGIMDALCK 57
Query: 127 IGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
G E I+ + R+ + P + Y+ I F K+ +L L+EM RG +
Sbjct: 58 EGRSAEAYGFIETM--RSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNH 115
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLGEF 241
T N F+ ++G + + + + + +D G + + K + L +
Sbjct: 116 VTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDE 175
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
+ + G K +N +L ++ + F RM+ +G PD TF + + R
Sbjct: 176 MENSGCVPKPG---CYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCR 232
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
D L L+ MK + P V Y ++DA R GR
Sbjct: 233 GHRIDDALLLLQQMKSAGLAPREVIYNTLIDAL--NRAGR 270
>gi|449457361|ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Cucumis sativus]
Length = 858
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 111/309 (35%), Gaps = 62/309 (20%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ +K L L + +G+ P NST L+ Y+ GF EA +VW E ++ +
Sbjct: 196 LGKAQKWRLVESLWVEMNKKGIKPINSTYGTLIDVYSKGGFKEEA-LVWLERMNEQGMEP 254
Query: 114 VQV-LSDLMDAYGRIGCFNEIISIIDQVSCRNA------------------DLLPE---- 150
+V + ++ Y + G F + S + S N+ L P
Sbjct: 255 DEVTMGIVVQLYKKAGEFQKAESFFKKWSSCNSMKYEITNKKKAASVKVESSLHPPHVSL 314
Query: 151 ---VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I +GK GQL+ T + M+ G S + T N I G L E+
Sbjct: 315 STYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEVTFLM 374
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
+++ + D + TY N+L+ YA +
Sbjct: 375 QKMEELQCPPD-------TRTY----------------------------NILISLYAKH 399
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ F M EAG PD+ ++ A+S M + + M + D T
Sbjct: 400 DNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVAEAEKLITEMDERGLEIDEFTQ 459
Query: 328 GCVVDAYLD 336
+ Y+D
Sbjct: 460 SALTRMYID 468
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 53/280 (18%), Positives = 110/280 (39%), Gaps = 5/280 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ G K A ++ +++KS G++PD + +L+ A +++ S+
Sbjct: 530 MIKAYGVVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAG 589
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V S ++ ++ ++G + ++ VY I+ F G ++
Sbjct: 590 LVSDCIPYSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAI 649
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS--F 227
N + M G S ++ N+ I Y++ G L E AY L+++ D I + +
Sbjct: 650 NYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTD---DGPAIYSSNCMI 706
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
ER E + + + + + ++L Y +++ +M E G
Sbjct: 707 DLYSERSMVKEAEEIFESLKKKGEANEFTFAMMLCMYKKIGRIQEAICVARQMKEQGLLS 766
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
DL +FN ++ F + + M +V PD TY
Sbjct: 767 DLLSFNNMISLYAMDGRFKEAVSIFQEMMKAAVQPDECTY 806
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 112/272 (41%), Gaps = 19/272 (6%)
Query: 32 ARKIIRYRKQEGFV--DCA--SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A+KI K G V C+ SL++ L P +A + ++S GL+ D ++
Sbjct: 543 AQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVIS 602
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
++ G + A ++ E++ + V L++A+ G E I+ ++ +
Sbjct: 603 SFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAMKRDGLSG 662
Query: 148 LPEVYSRAISCFGKQGQLELMENTLK--EMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+Y+ I + K G L+ K E G ++ S+ N I YS + E E
Sbjct: 663 NTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPAIYSS--NCMIDLYSERSMVKEAEE 720
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKE----RKFFMLGEFLRDVGLGRKDLGNLL-WNLL 260
+ LK+ E A+ K+ ++ + +++ GL L +LL +N +
Sbjct: 721 IFESLKKKGEA--NEFTFAMMLCMYKKIGRIQEAICVARQMKEQGL----LSDLLSFNNM 774
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ YA + + K F M +A PD T+
Sbjct: 775 ISLYAMDGRFKEAVSIFQEMMKAAVQPDECTY 806
>gi|449518091|ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g23020-like [Cucumis sativus]
Length = 859
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 111/309 (35%), Gaps = 62/309 (20%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ +K L L + +G+ P NST L+ Y+ GF EA +VW E ++ +
Sbjct: 197 LGKAQKWRLVESLWVEMNKKGIKPINSTYGTLIDVYSKGGFKEEA-LVWLERMNEQGMEP 255
Query: 114 VQV-LSDLMDAYGRIGCFNEIISIIDQVSCRNA------------------DLLPE---- 150
+V + ++ Y + G F + S + S N+ L P
Sbjct: 256 DEVTMGIVVQLYKKAGEFQKAESFFKKWSSCNSMKYEITNKKKAASVKVESSLHPPHVSL 315
Query: 151 ---VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I +GK GQL+ T + M+ G S + T N I G L E+
Sbjct: 316 STYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEVTFLM 375
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
+++ + D + TY N+L+ YA +
Sbjct: 376 QKMEELQCPPD-------TRTY----------------------------NILISLYAKH 400
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ F M EAG PD+ ++ A+S M + + M + D T
Sbjct: 401 DNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVAEAEKLITEMDERGLEIDEFTQ 460
Query: 328 GCVVDAYLD 336
+ Y+D
Sbjct: 461 SALTRMYID 469
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 53/280 (18%), Positives = 110/280 (39%), Gaps = 5/280 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ G K A ++ +++KS G++PD + +L+ A +++ S+
Sbjct: 531 MIKAYGVVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAG 590
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V S ++ ++ ++G + ++ VY I+ F G ++
Sbjct: 591 LVSDCIPYSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAI 650
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS--F 227
N + M G S ++ N+ I Y++ G L E AY L+++ D I + +
Sbjct: 651 NYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTD---DGPAIYSSNCMI 707
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
ER E + + + + + ++L Y +++ +M E G
Sbjct: 708 DLYSERSMVKEAEEIFESLKKKGEANEFTFAMMLCMYKKIGRIQEAICVARQMKEQGLLS 767
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
DL +FN ++ F + + M +V PD TY
Sbjct: 768 DLLSFNNMISLYAMDGRFKEAVSIFQEMMKAAVQPDECTY 807
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 112/272 (41%), Gaps = 19/272 (6%)
Query: 32 ARKIIRYRKQEGFV--DCA--SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A+KI K G V C+ SL++ L P +A + ++S GL+ D ++
Sbjct: 544 AQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVIS 603
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
++ G + A ++ E++ + V L++A+ G E I+ ++ +
Sbjct: 604 SFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAINYVNAMKRDGLSG 663
Query: 148 LPEVYSRAISCFGKQGQLELMENTLK--EMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+Y+ I + K G L+ K E G ++ S+ N I YS + E E
Sbjct: 664 NTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPAIYSS--NCMIDLYSERSMVKEAEE 721
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKE----RKFFMLGEFLRDVGLGRKDLGNLL-WNLL 260
+ LK+ E A+ K+ ++ + +++ GL L +LL +N +
Sbjct: 722 IFESLKKKGEA--NEFTFAMMLCMYKKIGRIQEAICVARQMKEQGL----LSDLLSFNNM 775
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ YA + + K F M +A PD T+
Sbjct: 776 ISLYAMDGRFKEAVSIFQEMMKAAVQPDECTY 807
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 107/271 (39%), Gaps = 16/271 (5%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ PD T L+ N G + A ++ E++ S V + L++ G N
Sbjct: 158 GIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMA 217
Query: 134 ISI---IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN 188
+ + ++Q C+ P V Y+ I K + + L EMV RG D+ T N
Sbjct: 218 VHVFKKMEQNGCK-----PNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYN 272
Query: 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR---DV 245
+ + G L E + R++++ D + + K+R +FL D
Sbjct: 273 SIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQ 332
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
G+ D+ L L Y G ++ R F +M + G PD+ +N + + +
Sbjct: 333 GI-PPDVVTYTTILHGLCYLG--QLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLV 389
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
D L M + P+ VTY ++ + +
Sbjct: 390 NDAMEFLSEMVDRGIPPNAVTYSTILHGFCN 420
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 54/297 (18%), Positives = 119/297 (40%), Gaps = 26/297 (8%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLS 107
+++ L + + + A ++ + +G+ PD T ++ LCY G + EA +++++
Sbjct: 309 IIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYL--GQLNEAIRLFKKMEQ 366
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
V + ++D+ + N+ + + ++ R YS + F GQL+
Sbjct: 367 KGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDE 426
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
KEMV R ++ T + + + G ++E + + ++G+ +
Sbjct: 427 ATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVF-------ETMTEKGVEPNIY 479
Query: 228 TYLKERKFFMLGEFLR----------DVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQRE 276
TY M G LR ++ +G+ +L +N+L+ Y + +M +
Sbjct: 480 TY----NALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKAL 535
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+MS P+ T+N + D + M + P L+TY +++
Sbjct: 536 LTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNG 592
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 52/310 (16%), Positives = 114/310 (36%), Gaps = 10/310 (3%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L +++R + + +L+ L ++A + ++ G P+ T ++
Sbjct: 184 ELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSL 243
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI---IDQVSCRNAD 146
+ V +A E++ + ++ +G NE + ++Q C+
Sbjct: 244 CKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCK--- 300
Query: 147 LLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
P+V Y+ I K + + L EMV +G D T + G L E
Sbjct: 301 --PDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAI 358
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ ++++ D + + K+R EFL ++ + ++ +L +
Sbjct: 359 RLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGF 418
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL 324
++ + F M P+ TF+I + M + E M + V P++
Sbjct: 419 CNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNI 478
Query: 325 VTYGCVVDAY 334
TY +++ Y
Sbjct: 479 YTYNALMNGY 488
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 17/226 (7%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
++D Y R G N + + D++ R DL+ ++ I+ F K+G E +EM G
Sbjct: 140 MIDGYMRSGQVNNAVKLFDEMPER--DLIS--WTAMINGFVKKGFHEEALAWFREMQISG 195
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID---KEGIRAVSFTYLKERKFF 236
D A + + G+L+ +G L R++++ K IR VS + +
Sbjct: 196 VKPDYVAIIAALAACTHLGALS-----FG-LWVHRYVMNQDFKNNIR-VSNSLIDLYCRC 248
Query: 237 MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
EF R+V + + WN +++ +A N F +M E GF PD TF
Sbjct: 249 GCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGAL 308
Query: 297 VAFSRMSMFWDLHLSLEHMKHES-VGPDLVTYGCVVDAYLDKRLGR 341
A S + + + + MK + + P + YGC+VD Y R GR
Sbjct: 309 TACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLY--SRAGR 352
>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 650
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ K+ H L +K +G PD T L+ + G V EA ++EEL S
Sbjct: 452 LGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPD 511
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
+ + L++ G+ G +E ++ + L P+V YS + CFGK ++E+ +
Sbjct: 512 IISYNSLINCLGKNGDVDEAHVRFKEM--QEKGLNPDVVTYSTLMECFGKTERVEMAYSL 569
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+EM+ +G + T N + + G E Y ++K ++G+ S TY
Sbjct: 570 FEEMLVKGCQPNIVTYNILLDCLEKSGRTAEAVDLYTKMK-------QQGLTPDSITY 620
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ GR + A + ++ PD + +L+ C NG V EA V ++E+
Sbjct: 483 LISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKG 542
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V S LM+ +G+ S+ +++ + Y+ + C K G+
Sbjct: 543 LNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTAEAV 602
Query: 170 NTLKEMVSRGFSVDSAT 186
+ +M +G + DS T
Sbjct: 603 DLYTKMKQQGLTPDSIT 619
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 98/245 (40%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ L ++ + A++L + GL+P++ T L+ + G +++++L
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG 360
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V + L++ ++G E ++ +++ R Y+ I K+G LE
Sbjct: 361 VKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESAL 420
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
KEMV G +D+ A I + R G + E E + + D V +
Sbjct: 421 EIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGF 480
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K+ + L+++ G + +N+LL +MK+ M G PD
Sbjct: 481 CKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDD 540
Query: 290 TTFNI 294
T+NI
Sbjct: 541 ITYNI 545
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 27 KNGDLARKIIRYRKQEG------FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K+G+ + + + K + V C + + L + A + N ++ GL PD+
Sbjct: 449 KSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSV 508
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T +M CY+ G V EA + E++ + V V++ L+D+ + G +E + D++
Sbjct: 509 TYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRM 568
Query: 141 SCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
++ L P V Y+ +S GK+G+++ + M+ + S ++ + N +
Sbjct: 569 --KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLL 619
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 124/301 (41%), Gaps = 23/301 (7%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L R + A +L+ T++S G+ P T + + +G +A +E++ +
Sbjct: 407 TLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAK 466
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLE 166
V ++ + + + +G E ++ + + R L P+ Y+ + C+ K GQ++
Sbjct: 467 GIVPNIVACNASLYSLAEMGRLREAKTMFNGL--RENGLAPDSVTYNMMMKCYSKVGQVD 524
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
N L EM+ G D N+ I + G + E + R+K K V+
Sbjct: 525 EAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDM-----KLSPTVVT 579
Query: 227 FTYL-----KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
+ L KE + E + + + +N LL + N +++ + F +M+
Sbjct: 580 YNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMT 639
Query: 282 EAGFHPDLTTFNIRAVAFSRMS----MFWDLH-----LSLEHMKHESVGPDLVTYGCVVD 332
PD+ T+N + + FW H + +H+ ++ P LV G + D
Sbjct: 640 VMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGD 699
Query: 333 A 333
A
Sbjct: 700 A 700
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 107/283 (37%), Gaps = 22/283 (7%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L +K+ G PD T L+ + +G + E +++E++S + ++
Sbjct: 807 AWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVIS 866
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ + ++ + + + P Y I K G+LE +EM G
Sbjct: 867 SLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKP 926
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA--VSFTYLKE-------- 232
+ A N I Y + G + ETA KR + EGIR S+T L +
Sbjct: 927 NCAIFNILINGYGKIG---DTETACQLFKR----MVNEGIRPDLKSYTILVDCLCLAGRV 979
Query: 233 -RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
+ E L+ GL D + +N ++ + +M+ + M G PDL T
Sbjct: 980 DEALYYFNE-LKSTGL---DPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYT 1035
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+N + M E ++ + PD+ TY ++ Y
Sbjct: 1036 YNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGY 1078
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 107/282 (37%), Gaps = 26/282 (9%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
SEGL P T ALM+ V+ +E+ +V + + GR G +
Sbjct: 220 SEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKID 279
Query: 132 EIISI---IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN 188
E I +D C DL+ Y+ I GQLE + +M + G D
Sbjct: 280 EAYEIFRRMDDEGC-GPDLV--TYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYI 336
Query: 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-----KERKF---FMLGE 240
+ ++ FG L + + +++ ++ D V+FT L K R F F +
Sbjct: 337 TLLDKFNDFGDLDTFKEFWSQMEADGYMPD-----VVTFTILVDVLCKARDFDEAFATFD 391
Query: 241 FLRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+R G+ L NL +N L+ +++ + M G P T+NI F
Sbjct: 392 VMRKQGI----LPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYF 447
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
+ + E MK + + P++V C Y +GR
Sbjct: 448 GKSGETGKAVETFEKMKAKGIVPNIV--ACNASLYSLAEMGR 487
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 72/365 (19%), Positives = 136/365 (37%), Gaps = 56/365 (15%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA--------------- 98
LGR K A+++ + EG PD T L+ N G + A
Sbjct: 272 LGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPD 331
Query: 99 QVV--------------------WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
QV+ W ++ + ++ V + L+D + F+E + D
Sbjct: 332 QVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFD 391
Query: 139 QVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ R +LP + Y+ I + G++E L M S G + T N FI Y+ +
Sbjct: 392 VM--RKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGK 449
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-----LKERKFFMLGEFLRDVGLGRKD 251
G + + ++K + + A ++ L+E K G LR+ GL
Sbjct: 450 SGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNG--LRENGLAPD- 506
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF---SRMSMFWDL 308
++ +N+++ Y+ ++ M G PD+ N + R+ W +
Sbjct: 507 --SVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQM 564
Query: 309 HLSLEHMKHESVGPDLVTYGCVVDAY-LDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEA 367
+ MK + P +VTY ++ + R+ + ++ S + SP + + +
Sbjct: 565 ---FDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDC 621
Query: 368 FGKGD 372
F K D
Sbjct: 622 FCKND 626
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 4/148 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ G+ A QL + +EG+ PD + L+ C G V EA + EL S+
Sbjct: 934 LINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTG 993
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLEL 167
+ +++ G+ E +++ +++ RN ++P++Y+ + G G +E
Sbjct: 994 LDPDFIAYNRIINGLGKSQRMEEALALYNEM--RNRGIVPDLYTYNSLMLNLGLAGMVEQ 1051
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYS 195
+ +E+ G D T NA I YS
Sbjct: 1052 AKRMYEELQLAGLEPDVFTYNALIRGYS 1079
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 62/172 (36%), Gaps = 35/172 (20%)
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221
+G L M L +M GF +++ + N I + G E Y R+ EG
Sbjct: 170 RGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMV-------SEG 222
Query: 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281
++ LK M V LG+K ++ LL M
Sbjct: 223 LKPS----LKTYSALM-------VALGKKRDSEMVMVLL-----------------KEME 254
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ G P++ TF I R + + M E GPDLVTY ++DA
Sbjct: 255 DLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDA 306
Score = 37.7 bits (86), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 125/308 (40%), Gaps = 26/308 (8%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G + + V ++ + FVL+ + L+ + G E + + ++ + Y
Sbjct: 171 GGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTY 230
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
S + GK+ E++ LKEM G + T F I G +++ AY +R
Sbjct: 231 SALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYT---FTICIRVLGRAGKIDEAYEIFRR 287
Query: 213 SRHLIDKEGIRA--VSFTYLKERKFFMLGE-------FLRDVGLGRKDLGNLLWNLLLLS 263
+D EG V++T L + G+ F++ G K +++ LL
Sbjct: 288 ----MDDEGCGPDLVTYTVLID-ALCNAGQLENAKELFVKMKANGHKP-DQVIYITLLDK 341
Query: 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
+ + + + + +M G+ PD+ TF I + F + + + M+ + + P+
Sbjct: 342 FNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPN 401
Query: 324 LVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVF----EAFGK-GDFHSSSE 378
L TY ++ L R GR D L + +S V Y + + FGK G+ + E
Sbjct: 402 LHTYNTLICGLL--RAGRIED-ALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVE 458
Query: 379 AFLEFKRQ 386
F + K +
Sbjct: 459 TFEKMKAK 466
>gi|255661168|gb|ACU25753.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 352
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 95/238 (39%), Gaps = 48/238 (20%)
Query: 30 DLARKIIRYRK---------QEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL 76
+L+RK+ Y K + GF V +++ G+ K A L++ +++ G+
Sbjct: 52 ELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVT 111
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------- 128
P+ ++ L+ Y N LEA V+ E+ +L + + ++D YG++G
Sbjct: 112 PNTTSYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171
Query: 129 ---------------------------CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161
F E I + + +N + Y+ + +GK
Sbjct: 172 FWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGK 231
Query: 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
+ E N ++EM +RG +S T + I + + G L + +L+ S ID+
Sbjct: 232 TLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQ 289
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 72/170 (42%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L ++ G+ P+ + L+ Y + EA ++ +
Sbjct: 152 CNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQ 211
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ +V + +M YG+ + ++I ++ R + YS IS +GK G+L+
Sbjct: 212 RKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLD 271
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
+++ S G +D I+ Y R G + + LKR ++
Sbjct: 272 RAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNI 321
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M D + I +
Sbjct: 1 RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D A+ + K + F + ++ ++ L
Sbjct: 61 SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTL 120
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + M+ +
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y D L
Sbjct: 181 EPNVVSYNTLLRVYGDAEL 199
>gi|297801170|ref|XP_002868469.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp.
lyrata]
gi|297314305|gb|EFH44728.1| hypothetical protein ARALYDRAFT_330235 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 131/315 (41%), Gaps = 36/315 (11%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RK + LA ++++ +K E + + T L+ Y + G + E+ V E+ F L+
Sbjct: 83 RKGQLELAVRVLDHMKEENVDKNQETCEILLNYYVSAGRLEESWRVVNEMKKRMFRLNSF 142
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
V ++ Y G + + + I++++ + E+Y+ I FGK G+L+ + L++M
Sbjct: 143 VYGKIIRIYRDNGMWKKALGIVEEIKEIGLPMDVEIYNSIIDTFGKYGELDEALDVLEKM 202
Query: 176 VSRGFSVDS-ATGNAFIIYYSRFGSLT------EMETAYGRLKRSR-------------- 214
S S + +T N+ I ++ G+L M G R
Sbjct: 203 QSSSDSKPNISTWNSLIRWHCHHGALDMALELFTMMQDQGLYPDPRMFVNLITRLGENGN 262
Query: 215 -HLIDKEGIRAVSFTYLKERKFF-----MLGEF--LRDVG--LGR-KDLGNLLWNLLLLS 263
++IDK + R + ++G+F +DV +G+ K G L +
Sbjct: 263 WNMIDKHFESIKCKEHKDTRAIYAALVQIIGQFGSFQDVEELVGKLKSQGVAPSANLFCT 322
Query: 264 YAGNFKMKSLQREFMR----MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
+A + + L ++ ++ M G P+L N+ AF + H+K
Sbjct: 323 FANAYAQQGLYKQTVKVLKMMENEGIEPNLIMLNVLINAFGTAGKHMEALSIYHHIKESG 382
Query: 320 VGPDLVTYGCVVDAY 334
PD+VTY ++ A+
Sbjct: 383 FTPDVVTYSTLMKAF 397
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A+LV+ +G+ +LV +KS+G+ P + C YA G + V + + +
Sbjct: 286 AALVQIIGQFGSFQDVEELVGKLKSQGVAPSANLFCTFANAYAQQGLYKQTVKVLKMMEN 345
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQL 165
++ +L+ L++A+G G E +SI + + + P+V YS + F + +
Sbjct: 346 EGIEPNLIMLNVLINAFGTAGKHMEALSIYHHI--KESGFTPDVVTYSTLMKAFTRAKKY 403
Query: 166 ELMENTLKEMVSRGFSVDSAT----GNAFIIYYSRF 197
E + +EM + G + D NAF+ +F
Sbjct: 404 EKVPEIFREMEASGCTADRKARQLLQNAFMSQTCKF 439
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/346 (16%), Positives = 135/346 (39%), Gaps = 43/346 (12%)
Query: 2 ETFSLSLHGSFKFKRFN-VPSHQTHPKNGDLARKIIRYRKQEGFVD-----CASLVEDLG 55
E ++GS+ + +N + S +LA +++ + K+E VD C L+
Sbjct: 59 EVVRFRINGSYSVRLYNALLSGYLRKGQLELAVRVLDHMKEEN-VDKNQETCEILLNYYV 117
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
+ + ++VN +K ++ ++ Y +NG +A + EE+ + V+
Sbjct: 118 SAGRLEESWRVVNEMKKRMFRLNSFVYGKIIRIYRDNGMWKKALGIVEEIKEIGLPMDVE 177
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVS-------------------CRNADLL-------- 148
+ + ++D +G+ G +E + +++++ C + L
Sbjct: 178 IYNSIIDTFGKYGELDEALDVLEKMQSSSDSKPNISTWNSLIRWHCHHGALDMALELFTM 237
Query: 149 ---------PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199
P ++ I+ G+ G +++ + + + A A + +FGS
Sbjct: 238 MQDQGLYPDPRMFVNLITRLGENGNWNMIDKHFESIKCKEHKDTRAIYAALVQIIGQFGS 297
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
++E G+LK + Y ++ + + L+ + + ++ N+
Sbjct: 298 FQDVEELVGKLKSQGVAPSANLFCTFANAYAQQGLYKQTVKVLKMMENEGIEPNLIMLNV 357
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
L+ ++ K + + E+GF PD+ T++ AF+R +
Sbjct: 358 LINAFGTAGKHMEALSIYHHIKESGFTPDVVTYSTLMKAFTRAKKY 403
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 95/235 (40%), Gaps = 7/235 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL----LSSSFVLSVQVLS 118
A LV + S G PD + +L+ A+ G LEA +++E+ ++ S+ SV++ +
Sbjct: 18 AMSLVAEIDSLGSHPDPLSYVSLIETLASLGRTLEADALFQEVVRFRINGSY--SVRLYN 75
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+ Y R G + ++D + N D E ++ + G+LE + EM R
Sbjct: 76 ALLSGYLRKGQLELAVRVLDHMKEENVDKNQETCEILLNYYVSAGRLEESWRVVNEMKKR 135
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
F ++S I Y G + +K +D E ++ T+ K +
Sbjct: 136 MFRLNSFVYGKIIRIYRDNGMWKKALGIVEEIKEIGLPMDVEIYNSIIDTFGKYGELDEA 195
Query: 239 GEFLRDVGLGRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ L + N+ WN L+ + + + F M + G +PD F
Sbjct: 196 LDVLEKMQSSSDSKPNISTWNSLIRWHCHHGALDMALELFTMMQDQGLYPDPRMF 250
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/311 (19%), Positives = 131/311 (42%), Gaps = 18/311 (5%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92
+K++ + V + +++ L + + + A L ++S G+ P T +L+ N+
Sbjct: 233 KKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNS 292
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV- 151
G +A ++++E+L + V S L+DA + G E +S+ ++ + P++
Sbjct: 293 GQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMI--QIAMEPDIV 350
Query: 152 -YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
YS I K + L EM+SR D T + ++ + + G ++E ++
Sbjct: 351 TYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSII--- 407
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR------DVGLGRKDLGNLL-WNLLLLS 263
+L+ + G+R TY + L + D+ + + ++L +N+L+
Sbjct: 408 ----NLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKG 463
Query: 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
Y + ++ ++ F MS G P+ T + + + M PD
Sbjct: 464 YCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPD 523
Query: 324 LVTYGCVVDAY 334
L+TY ++ +
Sbjct: 524 LITYSTLLSGF 534
>gi|225450579|ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
mitochondrial [Vitis vinifera]
gi|296089781|emb|CBI39600.3| unnamed protein product [Vitis vinifera]
Length = 498
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/317 (20%), Positives = 129/317 (40%), Gaps = 11/317 (3%)
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
N T AL+ CY + +A ++++L +FV S ++++ Y R+G ++ S++
Sbjct: 133 NKTYGALLNCYCKENMLDKAVELFKKLKELNFVSSALSYNNMISLYLRVGQPEKVPSLVH 192
Query: 139 QVSCRN--ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
++ ++ ADL Y+ ++ + E +E L +M RG D T Y
Sbjct: 193 EMEEKDIPADLY--TYNLLMNSYASVKDFEAVEQVLDKMKKRGVERDWFTYGNLANIYVD 250
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
G + A +L+++++L D E R + Y + + + L + N
Sbjct: 251 AGHTKKANYALQKLEQNKNLHDPEAFRMLINLYARTSNLEGVNRAWESLKLAHPKINNKS 310
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+ ++LL+ + + L++ F D+ N+ ++ + + +L E +
Sbjct: 311 YLIMLLALSKLGDVAGLEKCFKEWESGCSTYDVRLSNVMLESYLNREIIEEANLLSESIA 370
Query: 317 HESVGPDLVTYGCVVDAYLDKR----LGRNLDFGLSKMNLDDS---PVVSTDPYVFEAFG 369
L T + YL K + LD G SK + +++ P T E F
Sbjct: 371 KRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMGASKADPENNKWFPTEETITMFLEYFE 430
Query: 370 KGDFHSSSEAFLEFKRQ 386
+ S+E F E R+
Sbjct: 431 EVKDVDSAEKFCETMRK 447
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/330 (20%), Positives = 131/330 (39%), Gaps = 44/330 (13%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L +++ Q V S+V + + LA L+ + + D T ++
Sbjct: 157 LVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLC 216
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
+G + A +++E+ + S+ + L+ + G +N+ + ++ ++ R ++P
Sbjct: 217 RDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRK--IIPN 274
Query: 151 V--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
V ++ I F K+G+L+ KEM+++G S ++ T N+ + Y L+E
Sbjct: 275 VITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLD 334
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+ R+ D V+FT L + Y
Sbjct: 335 LMVRNNCSPD-----IVTFTSL------------------------------IKGYCKVK 359
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
++ + F ++S+ G + T++I F + + M V PD++TYG
Sbjct: 360 RVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYG 419
Query: 329 CVVDAYLDK-RLGRNL----DFGLSKMNLD 353
++D D +L + L D SKMNLD
Sbjct: 420 ILLDGLCDNGKLEKALEIFEDLQKSKMNLD 449
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 8/223 (3%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
TF+ + G K KR + + L RKI + V + LV+ + K +
Sbjct: 347 TFTSLIKGYCKVKRVD--------EGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEI 398
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L + S G+LPD T L+ +NG + +A ++E+L S L + + + +++
Sbjct: 399 AEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIE 458
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ G + ++ + C+ Y+ IS K+G L L++M G
Sbjct: 459 GMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEP 518
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ T N I + R G LT +K D I+ V
Sbjct: 519 NDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 561
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/287 (16%), Positives = 115/287 (40%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SLV L + K + QL+ + S ++P+ T L+ + G + EA +++E+++
Sbjct: 245 SLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITK 304
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ + LMD Y +E +++D + N ++ I + K +++
Sbjct: 305 GISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEG 364
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
+++ RG ++ T + + + + G L E + + L D +
Sbjct: 365 MKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDG 424
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
K E D+ + +L +++ +++ K++ F + G P+
Sbjct: 425 LCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 484
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ T+ + + + ++ L M+ + P+ TY ++ A+L
Sbjct: 485 VMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHL 531
>gi|147788269|emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
Length = 472
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 39/275 (14%)
Query: 91 NNGFVLEAQVVWEELLSSSFV-LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
N+ +L+A+ ++ + ++S L ++ + L+ +Y I N+ IS + + P
Sbjct: 70 NSPNLLDAKKLFASITTTSTTPLDLRFHNALLQSYSSISTVNDSISFLRHMIKSQPSFSP 129
Query: 150 EVYSRAI----SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
E + I SC L + TL MV+ GF D T + + SL
Sbjct: 130 ERSTYHILLSQSCKSPNSDLSAVHQTLNLMVTHGFPPDRVTTDIAV------RSLC---- 179
Query: 206 AYGRLKRSRHLIDKEGIR---AVSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNL 255
+ GR + + L+ + ++ SFTY K R + F+ ++ + +L
Sbjct: 180 SAGREEHAIELVKELSLKHSPPDSFTYNFIIRHLCKTRALSTVYNFIDELQNSFQLKPDL 239
Query: 256 LWNLLLLSYAGNFK-MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+ +L+ N K ++ R + EAGF PD +N + + + +
Sbjct: 240 VTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAIGVYKK 299
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
MK E V PDLVTY ++ FGLSK
Sbjct: 300 MKEEGVEPDLVTYNTLI-------------FGLSK 321
>gi|357493977|ref|XP_003617277.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518612|gb|AET00236.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 502
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 130/306 (42%), Gaps = 28/306 (9%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
LVE RK+ A ++ N + G++PD + +++ ++ NG + A +E++
Sbjct: 183 LVESF-RKEDVWEAERVFNEMLQCGVVPDLISFSSIIGVFSRNGELGRALAYFEKMKGVG 241
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V + + L++ Y R + + + +++ R+ + Y+ ++ + L+ +
Sbjct: 242 LVPDTVIYTILINGYCRNNDVSGALKVRNEMVERSCVMDVVTYNTLLNGLCRGKMLDDAD 301
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT------EMETAYGRLKRS----RHLIDK 219
KEMV RG D T I Y + G++T E T ++++ R +I +
Sbjct: 302 ELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETITLRSEMEKAKELWRDMISR 361
Query: 220 EGI-RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
E +SF+ L F LG + G GN +S A +F + ++ E +
Sbjct: 362 EIFPHYISFSILIN-GFCSLGLVSESLIKGYLRAGN-------VSKANDF-LNTMVSEGV 412
Query: 279 RMSEAGFH-------PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
++ PDL T+N FSR + + L M + + PD TY V+
Sbjct: 413 PPDCITYNTLINRLLPDLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSVI 472
Query: 332 DAYLDK 337
+ Y+ K
Sbjct: 473 NGYVSK 478
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 76/195 (38%), Gaps = 24/195 (12%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ I+ K+G E + L +M+ GF D+AT N ++ R + E E + +
Sbjct: 144 YNALINGLCKEGGYESAKCVLDKMLGVGFCPDAATFNPVLVESFRKEDVWEAERVFNEML 203
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR--------KDLG----NLLWNL 259
+ + D +SF+ + +G F R+ LGR K +G +++ +
Sbjct: 204 QCGVVPD-----LISFSSI-------IGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTI 251
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
L+ Y N + + M E D+ T+N R M D + M
Sbjct: 252 LINGYCRNNDVSGALKVRNEMVERSCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERG 311
Query: 320 VGPDLVTYGCVVDAY 334
V PD T ++ Y
Sbjct: 312 VFPDFYTLTTLIHGY 326
>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 100/245 (40%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ K A +L++ + +G++ D T + G + A+ V EE+ S
Sbjct: 289 SLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSR 348
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+V S ++D + + +++ +++ R+ + Y+ + + K G+ +
Sbjct: 349 RVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEA 408
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
KEM S G D T NA + Y R+G E+ + +K + +
Sbjct: 409 IGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDV 468
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y K F + +D + ++ + + ++ S N ++S + M E G P+
Sbjct: 469 YTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPN 528
Query: 289 LTTFN 293
+ TFN
Sbjct: 529 VVTFN 533
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 101/262 (38%), Gaps = 35/262 (13%)
Query: 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131
+EG++PD T +L+ A+ G AQ + E+ V + +D + G +
Sbjct: 277 AEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQID 336
Query: 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+++++S R YS I K LE N +EM R SVD + N +
Sbjct: 337 LARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMV 396
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251
Y++ G E A G+ K ++ G++ RDV
Sbjct: 397 GIYAKLGRFDE---AIGQCKE----MESCGMK-------------------RDV------ 424
Query: 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+ +N LL Y ++R F M +P+ T++ +++ MF +
Sbjct: 425 ---VTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDV 481
Query: 312 LEHMKHESVGPDLVTYGCVVDA 333
+ K + D+V Y ++D+
Sbjct: 482 YKDFKKAQLEVDVVFYTSIIDS 503
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/295 (19%), Positives = 121/295 (41%), Gaps = 15/295 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++++ LGR + + A +L + + EG + A++ Y NG +A ++ + S
Sbjct: 182 STMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMRS 241
Query: 108 SSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ 164
++ + L+DA + F+ ++ D++ ++P+ Y+ +S +G
Sbjct: 242 WGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEG--IVPDRLTYNSLLSVCASKGM 299
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT----EMETAYGRLKRSRHLIDKE 220
E + L EM +G D+ T N ++ + G + +E R +
Sbjct: 300 WETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYST 359
Query: 221 GIRAVSFTYLKERKFFMLGEF-LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
I + L E + E LR + + R + +N ++ YA + +
Sbjct: 360 MIDGCAKANLLEDALNLYEEMKLRSISVDR-----VSYNTMVGIYAKLGRFDEAIGQCKE 414
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M G D+ T+N + R M+ ++ E MK ++ P+ +TY ++D Y
Sbjct: 415 MESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVY 469
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/295 (19%), Positives = 115/295 (38%), Gaps = 20/295 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ ++ K +L + +G+ PD T L+ N + EA +W E +
Sbjct: 541 TLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKN 600
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+V +V ++D Y + E ++++++ + +L VY+ I + G +
Sbjct: 601 GYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAA 660
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID---KEGI--R 223
+M SRG + AT + SL G + ++HL+D KEG+
Sbjct: 661 FRLRDDMKSRGVLLSCAT----------YSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPN 710
Query: 224 AVSFT-----YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
V +T Y K + + L+++ + +++ + K K +
Sbjct: 711 VVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLN 770
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
M+E G PD T+N + + + M +V D +TY ++D
Sbjct: 771 EMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLIDG 825
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 107/267 (40%), Gaps = 2/267 (0%)
Query: 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134
L P++ L L+ G EA +W LL FV ++ + L+ + G E +
Sbjct: 462 LRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETL 521
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
++ + R Y+ IS K+G+++ +EMV +G D T N +
Sbjct: 522 KLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGL 581
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
+ E + K++ ++ + + Y K K L ++ + +L +
Sbjct: 582 CNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNS 641
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+++N L+ +Y N M + R M G T++ + + D L+
Sbjct: 642 VVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDE 701
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGR 341
M+ E + P++V Y ++ Y +LG+
Sbjct: 702 MRKEGLLPNVVCYTTIIGGY--SKLGQ 726
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
EA V +E+ FV + V + L+D Y ++G +E + I D + + + I
Sbjct: 344 EANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLI 403
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSAT 186
F K Q+ EN L+EM+ RG ++ +
Sbjct: 404 QGFCKSDQIGQAENVLEEMIGRGLPINQGS 433
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 116/291 (39%), Gaps = 2/291 (0%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V+ L + KK A L+ + + G P +T AL+ G + EA + +++ +
Sbjct: 272 AIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN 331
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
V + L+D G+ E + +++ R L Y+ I + G++
Sbjct: 332 GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQA 391
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI-RAVSF 227
+ K M S G D T + I S+ G + + ++ +R L E + A+
Sbjct: 392 SSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSME-ARGLAPNEVVYSALIH 450
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
K RK E L + + +N+L+ + +++ + F M EAG P
Sbjct: 451 GLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKP 510
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
D+ T+NI F + + M ++VTYG ++ +R
Sbjct: 511 DVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRR 561
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 118/314 (37%), Gaps = 21/314 (6%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL RKI+ V SL++ LG++K+ A++L + GL D AL+
Sbjct: 42 DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIREL 101
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
G + +A V++ + S V V LS ++D + G + I + R
Sbjct: 102 LQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNE 161
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
VYS I K +++ L +M + D+ T N I + G
Sbjct: 162 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGD---------- 211
Query: 210 LKRSRHLID---KEGIRAVSFTY-LKERKFFMLG-------EFLRDVGLGRKDLGNLLWN 258
++ +R D + G + +TY + F G ++ + + +
Sbjct: 212 VEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYT 271
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
++ A N K++ +++ G P + T+N +M + L +
Sbjct: 272 AIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN 331
Query: 319 SVGPDLVTYGCVVD 332
PD+VTY ++D
Sbjct: 332 GCTPDVVTYTSLID 345
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 67/162 (41%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL RKI+ V SL++ LG++K+ A++L + GL D AL+
Sbjct: 323 DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIREL 382
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
G + +A V++ + S V V LS ++D + G + I + R
Sbjct: 383 LQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNE 442
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
VYS I K +++ L +M + D+ T N I
Sbjct: 443 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 484
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/298 (17%), Positives = 115/298 (38%), Gaps = 13/298 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++L+ L + +K A +++ +K PD T L+ +G V A+ ++E+L
Sbjct: 165 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLE 224
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEII-SIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ V + L+ + + G + S+ + + + Y+ + K ++E
Sbjct: 225 AGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIE 284
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR-AV 225
++++ + G + AT NA + + G L E + R ++D V
Sbjct: 285 EAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA------IDLLRKIVDNGCTPDVV 338
Query: 226 SFTYL-----KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
++T L KE++ F + +++ L L + + L+ K+ + M
Sbjct: 339 TYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTM 398
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+ G PD+ T + S+ + M+ + P+ V Y ++ R
Sbjct: 399 TSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 456
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 107/273 (39%), Gaps = 10/273 (3%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+ + + G P +T AL+ G + EA + +++ + V + L+D
Sbjct: 5 AVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLID 64
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G+ E + +++ R L Y+ I + G++ + K M S G
Sbjct: 65 GLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVP 124
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI-RAVSFTYLKERKFFMLGEF 241
D T + I S+ G + + ++ +R L E + A+ K RK E
Sbjct: 125 DVVTLSTMIDGLSKAGRIGAAVRIFKSME-ARGLAPNEVVYSALIHGLCKARKMDCALEM 183
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
L + + +N+L+ + +++ + F M EAG PD+ T+NI F +
Sbjct: 184 LAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCK 243
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + H S+ + GC +D +
Sbjct: 244 AG-------NTDAASH-SLAQETTINGCTIDIH 268
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 130/315 (41%), Gaps = 16/315 (5%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L K+ + + + G + ++++ L + K A L ++++G+ P+ T +L+ C
Sbjct: 243 LLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
N G +A + +++ V S L+DA+ + G E + D++ R+ D
Sbjct: 303 NYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIV 362
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
YS I+ F +L+ + + MVS+ D + + I + + + E + +
Sbjct: 363 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREM 422
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFF-----MLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+ R L+ V++T L + F M E +++ + +N LL
Sbjct: 423 SQ-RGLVGN----TVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 477
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF---WDLHLSLEHMKHESVGP 322
N K++ F + + P + T+NI + WDL +L + V P
Sbjct: 478 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS---LKGVKP 534
Query: 323 DLVTYGCVVDAYLDK 337
D+V Y ++ + K
Sbjct: 535 DVVAYNTMISGFCRK 549
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 64/336 (19%), Positives = 127/336 (37%), Gaps = 18/336 (5%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
TF+ +HG F H + L +++ Q V +V L ++ L
Sbjct: 188 TFNTLIHGLFL--------HNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+N ++ L P ++ N + +A +++E+ + +V S L+
Sbjct: 240 AFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVY--SRAISCFGKQGQLELMENTLKEMVSRGF 180
G +++ ++ + R + P+V+ S I F K+G+L E EMV R
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKIN--PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 357
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
T ++ I + L E + + + D + + K ++ E
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGME 417
Query: 241 FLRDVGLGRKDLGNLLWNLLLLS---YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
R++ R +GN + L+ AG+ M Q F M G P++ T+N
Sbjct: 418 LFREMS-QRGLVGNTVTYTTLIQGLFQAGDCDMA--QEIFKEMVSDGVPPNIMTYNTLLD 474
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ + E+++ + P + TY +++
Sbjct: 475 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG 510
>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 119/306 (38%), Gaps = 29/306 (9%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ D + P L Q+ + + ++PD L+ Y G + EA+ + E+
Sbjct: 33 SSLISDGRLGEGPLLLQQM----EEDNVIPDAIFFNTLLNGYCEAGKMKEAEALVLEMKE 88
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
L + L+ YG G E + ++ +++ ++ + P ++ I +
Sbjct: 89 RGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMA-KDVNSKPNDRTFNMLIKAWAHDKNP 147
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS-------LTEMETAYGRLKRSRHLID 218
E N + M + G D + N +++ G +TEM+ Y R + I
Sbjct: 148 EKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRPNERTYGIV 207
Query: 219 KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD---LGNLLWNLLLLSYAGNFKMKSLQR 275
G A + E LR + + D ++N L+ Y+ + K + +
Sbjct: 208 INGYIAAG----------QIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDK 257
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
F M G PD+ TF + A+ + + L MK + PD++ Y +V Y
Sbjct: 258 VFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGY- 316
Query: 336 DKRLGR 341
R GR
Sbjct: 317 -SRQGR 321
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 7/190 (3%)
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
E Y+ +S G+L L++M D+ N + Y G + E E
Sbjct: 26 ETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFNTLLNGYCEAGKMKEAEALVLE 85
Query: 210 LK-RSRHLIDKEG---IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+K R LI I+ E +L E +DV D +N+L+ ++A
Sbjct: 86 MKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDR---TFNMLIKAWA 142
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+ + + M AG PD+ ++N A F+++ WD + M++ + P+
Sbjct: 143 HDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRPNER 202
Query: 326 TYGCVVDAYL 335
TYG V++ Y+
Sbjct: 203 TYGIVINGYI 212
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 64/142 (45%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ L ++ K A++L N + GL+P+ T L+ + NG V A +++++LS
Sbjct: 212 LINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQG 271
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
F + + L+ + G ++ ++ID++S Y+ I K+G LE
Sbjct: 272 FSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAF 331
Query: 170 NTLKEMVSRGFSVDSATGNAFI 191
K M+ +D+ A +
Sbjct: 332 EFRKRMIKESIRLDNVAYTALV 353
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 16/183 (8%)
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
F K+G++ ++ + G + N + Y R G L E RLK + H
Sbjct: 146 FCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEG----FRLKSAMH--- 198
Query: 219 KEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLGN-LLWNLLLLSYAGNFKM 270
G++ +TY KE K E ++ L R + N + + L+ + N +
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKVDEANELFNEM-LDRGLVPNGVTFTTLIDVHCKNGMV 257
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
S + +M GF PDL T+N + + ++ M + PD +TY +
Sbjct: 258 DSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTL 317
Query: 331 VDA 333
+D
Sbjct: 318 IDG 320
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 97/264 (36%), Gaps = 39/264 (14%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
+L + + + G+ PD T L+ V EA ++ E+L V + + L+D +
Sbjct: 192 RLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVH 251
Query: 125 GRIGCFNEIISIIDQVSCR--NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ G + + I Q+ + + DL+ Y+ I K+G L+ + + EM G
Sbjct: 252 CKNGMVDSAMEIYKQMLSQGFSPDLI--TYNTLIYGLCKKGDLKQVRALIDEMSMNGLKP 309
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D T I + G L ETA+ KR + KE IR
Sbjct: 310 DKITYTTLIDGCCKEGDL---ETAFEFRKR----MIKESIR------------------- 343
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
L N+ + L+ + ++ F M G PD T+ + F +
Sbjct: 344 ---------LDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKK 394
Query: 303 SMFWDLHLSLEHMKHESVGPDLVT 326
L+ M+ + P +VT
Sbjct: 395 GDVRTASRLLKEMQRDGHVPCVVT 418
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/318 (20%), Positives = 123/318 (38%), Gaps = 24/318 (7%)
Query: 30 DLARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A +++ ++ G V ++V L + + A ++ + + EGL PD + L
Sbjct: 207 DAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTL 266
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ Y G + EA V+ E+ V V + L+ A R G ++++ Q+ R
Sbjct: 267 VSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGL 326
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+ ++ I F + G L+ +KEM N I Y + G + E
Sbjct: 327 RMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEA-- 384
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKE-RKFFMLGEFLRDVGLGRKDLGN------LLWN 258
+ H ++ +G++ TY + +G+ L RK L + ++
Sbjct: 385 -----RELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYS 439
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR---MSMFWDLHLSLEHM 315
L+ ++ F +M + G PD T+ + + LH + M
Sbjct: 440 SLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLH---DEM 496
Query: 316 KHESVGPDLVTYGCVVDA 333
+ V PD+VTY ++D
Sbjct: 497 IKKGVLPDVVTYSVLIDG 514
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/284 (19%), Positives = 115/284 (40%), Gaps = 23/284 (8%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA-QVVWEELLSSSFVLSVQVLSDLM 121
A +L+ ++ +G+ P+ T L+ G EA VV +++ + +V + L+
Sbjct: 138 ARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLV 197
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRG 179
A+ R G + ++ + R + P + ++ ++ K G++E EM G
Sbjct: 198 AAFCRAGEVDAAERLVGVM--REGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREG 255
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK-------- 231
+ D + N + Y + G L E + + + + D V+FT L
Sbjct: 256 LTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPD-----VVTFTSLIHAMCRAGN 310
Query: 232 -ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT 290
ER ++G+ +R+ GL + + L+ + N + M E P +
Sbjct: 311 LERAVALVGQ-MRERGL---RMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVV 366
Query: 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+N+ + ++ + + M+ + + PD+VTY ++ Y
Sbjct: 367 CYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGY 410
>gi|302766812|ref|XP_002966826.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
gi|300164817|gb|EFJ31425.1| hypothetical protein SELMODRAFT_11024 [Selaginella moellendorffii]
Length = 484
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 138/321 (42%), Gaps = 32/321 (9%)
Query: 45 VDCASL-VEDLGRKKKPHLAHQLVNTVKSE-GLLPDNSTLCALMLCYANNGFVLEAQVVW 102
V+C ++ + ++ +KK A QL+ ++ E GL PD+ ++ + N G + EA V
Sbjct: 51 VECYTVAIAEVVAEKKMSEAQQLLKQMEEEDGLAPDSVCFNTVINGWCNEGQMEEAMRVV 110
Query: 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNE----IISIIDQV--SCRNADLLPEV----- 151
+E+ + + + L+ YG G + ++ ++++ S + D L V
Sbjct: 111 QEMRQKNCRPTTSTYNTLIKGYGVAGQAEQAQQLVLHLLNKTRNSPSSEDGLEPVARPNL 170
Query: 152 --YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+ ++ + ++G+LE + + S G D+ T N Y+ G + E+E
Sbjct: 171 RTMNTLLNAWCREGRLEEAWRVVAMIKSAGMQPDAVTYNTLAKAYAAAGRVAELEDLIAD 230
Query: 210 LKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+K +R K +R + + ER +L L+ GL D+ + +N LL
Sbjct: 231 MKNARL---KPNLRTYAILISCYCQNGMPERGLQLLSR-LKFEGL-HPDV--VAFNTLLK 283
Query: 263 SYAG-NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
Y+ N + L+ M+ G PD+TT++ +S M L M+ + V
Sbjct: 284 GYSQENDQQLKLEMVLDLMAANGVRPDVTTYSTIMNWWSSAGMADKAQTILLEMQQDRVK 343
Query: 322 PDLVTYGCVVDAYLDKRLGRN 342
PD+ + + Y+ R GR
Sbjct: 344 PDVRAFAILAKGYV--RSGRT 362
>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 115/276 (41%), Gaps = 12/276 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + +G++PD + +LM ++ N + +A V + ++ V + + LM
Sbjct: 90 AKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMH 149
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
Y R G E + I D++ + L Y+ ++ K+ L + EMV RG
Sbjct: 150 GYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALP 209
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF- 241
D T I + + G++T+ + +G + + D V++ L + F +GE
Sbjct: 210 DFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPD-----IVAYNTLID-GFCKVGEME 263
Query: 242 ----LRDVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
L D + RK N + + +L+ +Y + R + M E G P L T N
Sbjct: 264 KASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVI 323
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ R L M + V PD ++Y +++
Sbjct: 324 KGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 107/267 (40%), Gaps = 14/267 (5%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVS 177
L+ AY R G E I++ ++ + L P + Y+ I+ K+G+ + L EM++
Sbjct: 7 LIGAYCREGLLEEAFEIMNSMA--DKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLN 64
Query: 178 RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM 237
G S D+ T N ++ R + +E + +G + R + D ++ + + R
Sbjct: 65 IGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQ 124
Query: 238 LGEFLRDVGLGRKDLG----NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+ RD+ K G N+++ +L+ Y N M + M E G D+ +N
Sbjct: 125 ALVYFRDM----KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 180
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL-DKRLGRNLDFGLSKMNL 352
+ M D + M PD T+ ++ + D + + L +
Sbjct: 181 TILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQR 240
Query: 353 DDSPVVSTDPYVFEAFGK-GDFHSSSE 378
+ P + + + F K G+ +SE
Sbjct: 241 NIKPDIVAYNTLIDGFCKVGEMEKASE 267
>gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus]
Length = 700
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 112/278 (40%), Gaps = 9/278 (3%)
Query: 60 PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD 119
P+ A + + S GL PDN TL A++ Y G V A +++ + + + S
Sbjct: 224 PNRAVEWFEKMPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFST 283
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L+ YG G ++ ++I +++ +Y+R + GK + K+++S G
Sbjct: 284 LIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNG 343
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR-----SRHLIDKEGIRAVSFTYLKERK 234
F + +T A I Y R + Y ++K + L + Y+ E
Sbjct: 344 FEPNWSTYAALIRAYGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEA- 402
Query: 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294
F + + ++ G D + ++ L+ Y+ ++ + M EAGF P L
Sbjct: 403 -FEIFQDMKSSGTCEPD--SWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTS 459
Query: 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
+ + D+ + E + + PD GC+++
Sbjct: 460 LIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCGCLLN 497
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 104/281 (37%), Gaps = 17/281 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
+ +L + + G+ PDN+T L+ C G A +E++ S L+ ++D
Sbjct: 192 SEKLFDEMLQRGVKPDNATFTTLISCARQCGLPNRAVEWFEKMPSFGLEPDNVTLAAMID 251
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
AYGR G +S+ D+ + P +S I +G G + N +EM S G
Sbjct: 252 AYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKP 311
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
+ +IY S+ + + + + LI G TY + + +
Sbjct: 312 N------LVIYNRLLDSMGKAKRPWQATMIHKDLISN-GFEPNWSTYAALIRAYGRARYG 364
Query: 243 RDV--------GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG-FHPDLTTFN 293
D G G +L LL+N LL A + F M +G PD TF+
Sbjct: 365 EDALVIYRQMKGKGM-ELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFS 423
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+S + +L M+ P L ++ Y
Sbjct: 424 SLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCY 464
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLL-PDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
S+ D+G + A ++ +KS G PD+ T +L+ Y+ G V EA+ E+
Sbjct: 391 SMCADIGYVDE---AFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMRE 447
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ F ++ VL+ L+ YG+ ++++ +QV +L E R C L +
Sbjct: 448 AGFEPTLFVLTSLIQCYGKAKQVDDVVRTFEQV----LELGIEPDDRFCGCL-----LNV 498
Query: 168 MENTLKEMVSR 178
M T KE + +
Sbjct: 499 MTQTPKEEIGK 509
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 15/206 (7%)
Query: 30 DLARKIIRYRKQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A +++ K+ G V ++ L + + A +L +++ EG+ + L
Sbjct: 344 DSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVL 403
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ Y G V EA ++E++LS + + + L+ G E +S+ DQ+
Sbjct: 404 IDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMV--KM 461
Query: 146 DLLPEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
L P VY+ I KQG + L++M+S G + T NAFI Y G + E
Sbjct: 462 GLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEA 521
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTY 229
E ++K +EG+ FTY
Sbjct: 522 EDMMVQMK-------EEGVPPDDFTY 540
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 98/245 (40%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ L ++ + A++L + GL+P++ T L+ + G +++++L
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG 360
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V + L++ ++G E ++ +++ R Y+ I K+G LE
Sbjct: 361 VKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESAL 420
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
KEMV G +D+ A I + R G + E E + + D V +
Sbjct: 421 EIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGF 480
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
K+ + L+++ G + +N+LL +MK+ M G PD
Sbjct: 481 CKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDD 540
Query: 290 TTFNI 294
T+NI
Sbjct: 541 ITYNI 545
>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
Length = 1131
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/295 (18%), Positives = 123/295 (41%), Gaps = 17/295 (5%)
Query: 52 EDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM-LCYANNGFVLEAQVVWEELLSSSF 110
+DLGR A L ++ G+ + T ALM +C + L A V+ ++ ++
Sbjct: 305 QDLGR------AMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKL-ALDVYRDMQAAGC 357
Query: 111 VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMEN 170
+V + L+D YG+ G + E +++++Q+ + ++ + Q +
Sbjct: 358 PANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALR 417
Query: 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR---SRHLIDKEGIRAVSF 227
++M + ++ T NA I +S+ G L ++ + + + R +I + +
Sbjct: 418 VYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACE 477
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
+ + L E +R G + N++ +N L+ + A + + F +M G
Sbjct: 478 KAGEWKLALQLFEEMRGEGC----VPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCR 533
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHM-KHESVGPDLVTYGCVVDAYLDKRLG 340
PD+ ++ A+ R + + E M + PD + Y ++D + +G
Sbjct: 534 PDVVSYTALIQAYERGGQWRRALAAFEEMIRARPCAPDSIVYNTIIDVLWETGVG 588
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 118/296 (39%), Gaps = 12/296 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEG----LLP--DNSTLCALML-CYANNGFVLEAQV 100
A +++DLG+ PH QL + ++ G L P D T +++ C A A
Sbjct: 254 AMVIKDLGKGGLPHRGAQLFDLLRRLGPGSPLAPLLDEFTFTSMISNCVAQQDLG-RAMA 312
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160
+ EE+ +V S LM+ + G + + + + Y+ I +G
Sbjct: 313 LAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVYG 372
Query: 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
K GQ E L++M + T N +I + E Y ++ S H +
Sbjct: 373 KSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTT 432
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL--LSYAGNFKMKSLQREFM 278
A+ + K + +++ + + ++ L+ AG +K+ +LQ F
Sbjct: 433 TYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKL-ALQL-FE 490
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M G P++ ++N A ++ + + E M+ + PD+V+Y ++ AY
Sbjct: 491 EMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTALIQAY 546
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 123/300 (41%), Gaps = 33/300 (11%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL- 106
++L+ + + A++L++ ++ G++P N+ ++ +NG V A V + ++
Sbjct: 171 STLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR 230
Query: 107 -SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQG 163
+ V++ +L D + RI + I+ + + C P V Y+ I+ F K G
Sbjct: 231 NCAPSVITYTILVDALCKSARISDASLILEDMIEAGCA-----PNVVTYNTLINGFCKLG 285
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
++ +M+ S D T N I Y + E K + ++ K G
Sbjct: 286 NMDEAVVLFNQMLENSCSPDVFTYNILIDGYCK------QERPQDGAKLLQEMV-KYGCE 338
Query: 224 AVSFTY-------LKERKF---FMLGEFLRDVGLGRKDL--GNLLWNLLLLSYAGNFKMK 271
TY +K K+ F L + + R+D + +NL++ + ++
Sbjct: 339 PNFITYNTLMDSLVKSGKYIDAFNLAQMML-----RRDCKPSHFTFNLMIDMFCKVGQLD 393
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
F M++ G PD+ T+NI R + D LE M PD+VTY +V
Sbjct: 394 LAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIV 453
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 51/289 (17%), Positives = 114/289 (39%), Gaps = 10/289 (3%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L++ ++++P +L+ + G P+ T LM +G ++A + + +L
Sbjct: 312 LIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRD 371
Query: 110 FVLSVQVLSDLMDAYGRIGCFN---EIISIIDQVSCRNADLLPEVYSRAISCFG--KQGQ 164
S + ++D + ++G + E+ ++ C LP++Y+ I G + +
Sbjct: 372 CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGC-----LPDIYTYNIMISGACRANR 426
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224
++ L+ M G D T N+ + + + E Y L+ + +D
Sbjct: 427 IDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCST 486
Query: 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
+ K R+ + LR++ + + +L+ + ++ F M + G
Sbjct: 487 LIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKG 546
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
P + T++I + + D + L+ M V PD + Y V+D
Sbjct: 547 CVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDG 595
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 61/299 (20%), Positives = 128/299 (42%), Gaps = 25/299 (8%)
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV---SCRNADLLPEV 151
+ +A ++ E+++ + +V + L++ + ++G +E + + +Q+ SC P+V
Sbjct: 252 ISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCS-----PDV 306
Query: 152 --YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
Y+ I + KQ + + L+EMV G + FI Y + SL +
Sbjct: 307 FTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPN------FITYNTLMDSLVKSGKYIDA 360
Query: 210 LKRSRHLIDKEGIRAVSFTY-LKERKFFMLGEF-----LRDVGLGRKDLGNL-LWNLLLL 262
++ ++ ++ + FT+ L F +G+ L + R L ++ +N+++
Sbjct: 361 FNLAQMMLRRD-CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMIS 419
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
++ ++ RM+EAG PD+ T+N + S + + E +++
Sbjct: 420 GACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFL 479
Query: 323 DLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS-PVVSTDPYVFEAFGKGDFHSSSEAF 380
D+VT ++D R + + L +M + S P V + F K D S AF
Sbjct: 480 DVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAF 538
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 117/286 (40%), Gaps = 28/286 (9%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +++ +K+ G+ PD+ T +L+ G + EA + E++ + + + L+D
Sbjct: 290 ARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLID 349
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
Y G + D++ R +LP V Y+ I +G+++ + +K+M G
Sbjct: 350 GYCNKGDLVKAFGYRDEMVRRA--ILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGI 407
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTY------LK 231
DS T N I Y R G+ K++ +L D+ +GI+ TY L
Sbjct: 408 VPDSITYNILINGYCRCGN----------AKKAFNLHDEMISKGIQPTLVTYTSLIYVLS 457
Query: 232 ERKFFMLGEFLRDVGL---GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
+R + L + + DL +++N L+ + N + M + PD
Sbjct: 458 KRNRMKAADDLFEKIIREGASPDL--IMFNALIDGHCANGNLDRAFALLKEMDKRNIVPD 515
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
T+N R + L+ MK + PD ++Y ++ Y
Sbjct: 516 EVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGY 561
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
DL KIIR + +L++ A L+ + ++PD T LM
Sbjct: 467 DLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGR 526
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
G V EA+ + +E+ + L+ Y + G N+ +I D++ +
Sbjct: 527 CREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTL 586
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSAT 186
Y+ I K Q +L E LKEMVS+G + D +T
Sbjct: 587 LTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDST 623
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 70/341 (20%), Positives = 139/341 (40%), Gaps = 19/341 (5%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
SL+ + + K A ++ +K GLLP T L+ Y N G +++A +E++
Sbjct: 310 GSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVR 369
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
+ + +V + L+ A G +E +I + ++ ++P+ Y+ I+ + + G
Sbjct: 370 RAILPTVSTYNLLIHALFLEGKMDEADGMIKDMG--DSGIVPDSITYNILINGYCRCGNA 427
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
+ N EM+S+G T + I S+ + + + ++ R D A+
Sbjct: 428 KKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNAL 487
Query: 226 SFTYLK----ERKFFMLGEFLRDVGLGRKDL--GNLLWNLLLLSYAGNFKMKSLQREFMR 279
+ +R F +L E + ++++ + +N L+ K++ +
Sbjct: 488 IDGHCANGNLDRAFALLKE------MDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKE 541
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339
M G PD ++N +S+ D + M P L+TY ++ +
Sbjct: 542 MKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQ 601
Query: 340 GRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKGDFHSSSEA 379
G + L +M + +P ST + E GK D SSEA
Sbjct: 602 GDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVD--DSSEA 640
>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 680
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 126/333 (37%), Gaps = 55/333 (16%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ G+ K A L+ + G+ P+ + L+ Y N LEA V+ E+
Sbjct: 267 SMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV 326
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV----------------- 151
+ L + + ++D YG++ E + S R D+ P V
Sbjct: 327 NCPLDLTTCNIMIDVYGQLDMVKEADRLF--WSLRKMDIEPNVVSYNTILRVYGEAELFG 384
Query: 152 --------------------YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
Y+ I +GK + E N ++EM SRG ++ T + I
Sbjct: 385 EAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTII 444
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM------LGEFLRDV 245
+ + G L T + +L+ S ID+ + + Y ER M L E
Sbjct: 445 SIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAY--ERVGLMGHAKRLLHELKLPD 502
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ R+ + +L+ AG+ + + F + E+G D++ F +SR +
Sbjct: 503 NIPRETA------ITILAKAGSTEEATWV--FRQAFESGEVKDISVFGCMINLYSRNQRY 554
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
++ E M+ PD V++AY +R
Sbjct: 555 VNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQR 587
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M S D + I R
Sbjct: 184 RQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDY 243
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D ++ Y K + F ++++ + ++ L
Sbjct: 244 SKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTL 303
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + ++ +
Sbjct: 304 LSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDI 363
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y + L
Sbjct: 364 EPNVVSYNTILRVYGEAEL 382
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/288 (18%), Positives = 113/288 (39%), Gaps = 17/288 (5%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L +++ + P+ + ++ Y EA ++ +
Sbjct: 335 CNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQ 394
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+V + ++ YG+ + +++ ++ R + YS IS +GK G+L+
Sbjct: 395 RKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLD 454
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LK ++ + I ++
Sbjct: 455 RAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILA 514
Query: 227 FTYLKE------RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
E R+ F GE KD+ ++ ++ Y+ N + ++ F +M
Sbjct: 515 KAGSTEEATWVFRQAFESGEV--------KDIS--VFGCMINLYSRNQRYVNVIEVFEKM 564
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES-VGPDLVTY 327
AG+ PD + A+ + F M+ E V PD V +
Sbjct: 565 RTAGYFPDSNAIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHF 612
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 78/165 (47%), Gaps = 6/165 (3%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ ++ R K+ +AH L + ++ L PD T L+ + G + ++ + W + +
Sbjct: 163 VLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEG-MFDSALSWLQKMEQD 221
Query: 110 FVLSVQVL-SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V VL S+L++ R+ +++ ISI ++ + + + P++ Y+ I+ +GK +
Sbjct: 222 RVSGDLVLYSNLIELSRRLCDYSKAISIFSRL--KRSGITPDLVAYNSMINVYGKAKLFK 279
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
+KEM G S ++ + + + Y E + + +K
Sbjct: 280 EARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMK 324
Score = 37.7 bits (86), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135
LPDN + A G EA V+ + S V + V +++ Y R + +I
Sbjct: 500 LPDNIPRETAITILAKAGSTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIE 559
Query: 136 IIDQVSCRNADLLPEVYSRA--ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ +++ R A P+ + A ++ +GKQ + E + +EM G +
Sbjct: 560 VFEKM--RTAGYFPDSNAIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSL 617
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKE 220
YS +E+ + RL+ ++ KE
Sbjct: 618 YSSKKDFEMVESLFERLESDPNVNSKE 644
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 65/132 (49%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S+++ L + + A L+ +K EG+ PD T L+ NG + +A++V+E+LL
Sbjct: 427 SILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVK 486
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
++L V + + ++ + G F+E + ++ ++ Y I + + +
Sbjct: 487 GYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKA 546
Query: 169 ENTLKEMVSRGF 180
E L+EM++RG
Sbjct: 547 EKLLREMITRGL 558
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 114/278 (41%), Gaps = 22/278 (7%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G P+ TL L+ G + +A +++++ F L+ L++ ++G +
Sbjct: 137 GYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAA 196
Query: 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ ++ +V + +Y+ I K + + EMVS+G S D T NA I
Sbjct: 197 LQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALI-- 254
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTY-------LKERKFFMLGEFLR 243
S F G++K + L +K E I +T+ KER+ L
Sbjct: 255 -SGF-------CIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLA 306
Query: 244 DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
+ +N L+ Y ++ + F +S+ G +P++ +++I F ++
Sbjct: 307 MMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIK 366
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
+ + M ++ PD+VTY ++D +LG+
Sbjct: 367 KVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLC--KLGK 402
>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
Length = 431
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 103/286 (36%), Gaps = 37/286 (12%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ L + LA ++ + GL PD ++ + EA ++ + S
Sbjct: 55 VIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMG 114
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ L+ + GR E + D++ R Y+ I + K G++E
Sbjct: 115 CPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAM 174
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
LK+M+ + + D T N+ I SR G + R+K+S + VSF
Sbjct: 175 VVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKS-----GVAVNTVSFN- 228
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA-GFHPD 288
+L G L +FM EA G P+
Sbjct: 229 ------------------------------AMLDCCGKAGKVGLAYQFMDEMEARGIKPN 258
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
TFN R + + L+ M+ + PD+ TY C+++A+
Sbjct: 259 SITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAF 304
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 62/141 (43%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
+ L PD+ TL +L+ + G A ++E + S ++ + ++D G+ G
Sbjct: 183 KNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGL 242
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+D++ R ++ I+C G+ L+EM S G + D T I
Sbjct: 243 AYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIE 302
Query: 193 YYSRFGSLTEMETAYGRLKRS 213
+++ G++ + +G ++++
Sbjct: 303 AFAKAGNMGKAFEMFGDMEKA 323
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 98/248 (39%), Gaps = 12/248 (4%)
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151
+G EA + EE+ L V + L++ + + G + + I + +S R
Sbjct: 305 DGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVT 364
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ I K+GQ++ + E V RG D NA I +S G++ G ++
Sbjct: 365 YTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEME 424
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEF-----LRDVGLGRKDLGNLL-WNLLLLSYA 265
+ R D V++ L R +LG L D R +L+ +N L+ Y+
Sbjct: 425 KKRIAPDD-----VTYNTLM-RGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYS 478
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
+K R M GF+P L T+N + D ++ M + PD
Sbjct: 479 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 538
Query: 326 TYGCVVDA 333
TY +++
Sbjct: 539 TYISLIEG 546
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 108/269 (40%), Gaps = 15/269 (5%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVL-SDLMDAYGRIGCFNE 132
G+ P+ T ++ + G V EA V++E+L+ V V+ + L+ Y G +
Sbjct: 216 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDT 275
Query: 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192
+ D++ R + Y+ + G+ ++EM +G ++D T N I
Sbjct: 276 ALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILIN 335
Query: 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY------LKERKFFMLGEFLRDVG 246
+ + G++ + + + R G+RA TY L ++ + L D
Sbjct: 336 GHCKEGNVKKALEIFENMSR-------RGVRATVVTYTSLIYALSKKGQVQETDKLFDEA 388
Query: 247 LGRKDLGNL-LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ R +L L+N L+ S++ + + M + PD T+N +
Sbjct: 389 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 448
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ ++ M + PDLVTY ++ Y
Sbjct: 449 DEARKLIDEMTKRGIQPDLVTYNTLISGY 477
Score = 37.7 bits (86), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +++ ++ + + PD+ T LM G V EA+ + +E+ + + L+
Sbjct: 416 AFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLIS 475
Query: 123 AYGRIGCFNEIISIIDQVSCR--NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180
Y G + + I +++ + N LL Y+ I K GQ + EN +KEMV G
Sbjct: 476 GYSMKGDVKDALRIRNEMMNKGFNPTLL--TYNALIQGLCKNGQGDDAENMVKEMVENGI 533
Query: 181 SVDSAT 186
+ D +T
Sbjct: 534 TPDDST 539
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,221,505,329
Number of Sequences: 23463169
Number of extensions: 251726691
Number of successful extensions: 778031
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1701
Number of HSP's successfully gapped in prelim test: 2404
Number of HSP's that attempted gapping in prelim test: 746207
Number of HSP's gapped (non-prelim): 23020
length of query: 412
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 267
effective length of database: 8,957,035,862
effective search space: 2391528575154
effective search space used: 2391528575154
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 78 (34.7 bits)