BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040580
(412 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2A1|PP263_ARATH Pentatricopeptide repeat-containing protein At3g42630
OS=Arabidopsis thaliana GN=At3g42630 PE=2 SV=2
Length = 415
Score = 483 bits (1244), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/414 (56%), Positives = 307/414 (74%), Gaps = 7/414 (1%)
Query: 6 LSLHGSFKFKRFNVPSHQTHPKNGDLARKIIR-------YRKQEGFVDCASLVEDLGRKK 58
LSL+ S K + + S T +A+K+I+ + ++ VD A LV+ L +++
Sbjct: 2 LSLNLSLKPQHLKLLSCYTDSSAPSIAKKLIKESKLSRDFSQKIQIVDYAPLVQTLSQRR 61
Query: 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118
P +AH++ KS LLP+ TLCALMLC+A NGFVL A+ +W+E+++S FV V V+S
Sbjct: 62 LPDVAHEIFLQTKSVNLLPNYRTLCALMLCFAENGFVLRARTIWDEIINSCFVPDVFVVS 121
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+ AY + GCF+E+ I V+ R++ LLP V S AISCFGK GQLELME ++EM S+
Sbjct: 122 KLISAYEQFGCFDEVAKITKDVAARHSKLLPVVSSLAISCFGKNGQLELMEGVIEEMDSK 181
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
G +++ T N + YYS FGSL +ME AYGR+K+ +I++E IRAV YLK+RKF+ L
Sbjct: 182 GVLLEAETANVIVRYYSFFGSLDKMEKAYGRVKKFGIVIEEEEIRAVVLAYLKQRKFYRL 241
Query: 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
EFL DVGLGR++LGN+LWN +LLSYA +FKMKSLQREF+ M +AGF PDLTTFNIRA+A
Sbjct: 242 REFLSDVGLGRRNLGNMLWNSVLLSYAADFKMKSLQREFIGMLDAGFSPDLTTFNIRALA 301
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVV 358
FSRM++FWDLHL+LEHM+ ++ PDLVT+GCVVDAY+DKRL RNL+F ++MNLDDSP+V
Sbjct: 302 FSRMALFWDLHLTLEHMRRLNIVPDLVTFGCVVDAYMDKRLARNLEFVYNRMNLDDSPLV 361
Query: 359 STDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLRRNQIFWNY 412
TDP FE GKGDFH SSEA LEF ++ WTYRKLI VYLKK+LRR+QIFWNY
Sbjct: 362 LTDPLAFEVLGKGDFHLSSEAVLEFSPRKNWTYRKLIGVYLKKKLRRDQIFWNY 415
>sp|O23278|PP310_ARATH Pentatricopeptide repeat-containing protein At4g14190,
chloroplastic OS=Arabidopsis thaliana GN=At4g14190 PE=2
SV=2
Length = 501
Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 152/338 (44%), Gaps = 13/338 (3%)
Query: 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134
L P +++ YA++G EA + + + + L++AYG+ ++EI+
Sbjct: 163 LSPSLEIYNSIIHSYADDGKFEEAMFYLNHMKENGLLPITETYDGLIEAYGKWKMYDEIV 222
Query: 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ ++ Y+ I F + G L+ ME + ++SR +++ +T + + Y
Sbjct: 223 LCLKRMESDGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMSRKMTLEPSTLLSMLEAY 282
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254
+ FG + +ME ++ R +D+ +R ++ Y++ F L + R + R
Sbjct: 283 AEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYIENLMFSRLDDLGRGISASRTRRTE 342
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
L W L LL +A K L M EA + T NI +A+S+M F + L L
Sbjct: 343 LAWCLRLLCHARLVSRKGLDYVVKEMEEARVPWNTTFANIALLAYSKMGDFTSIELLLSE 402
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPV-VSTDPYVFEAFGKGDF 373
++ + V DLVT G V D + G + K+ D PV + TDP V AFGKG F
Sbjct: 403 LRIKHVKLDLVTVGIVFDLSEARFDGTGVFMTWKKIGFLDKPVEMKTDPLVHAAFGKGQF 462
Query: 374 HSSSEAFLEFKRQ---------RKWTYRKLIAVYLKKQ 402
S E E K Q + WTY+ L+ + +K Q
Sbjct: 463 LRSCE---EVKNQSLGTRDGESKSWTYQYLMELVVKNQ 497
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 44/338 (13%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ R A +L N + +G PD T L+ + G V A ++EE+ ++
Sbjct: 354 SLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNA 413
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
++ + + YG G F E++ I D+++ L P++ ++ ++ FG+ G
Sbjct: 414 GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINV--CGLSPDIVTWNTLLAVFGQNGMDS 471
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ KEM GF + T N I YSR GS + T Y R+ + D V
Sbjct: 472 EVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVL 531
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK---MKSL---------- 273
+ + + L ++ GR L + LL +YA + M SL
Sbjct: 532 AALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIE 591
Query: 274 ----------------------QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311
+R F + E GF PD+TT N + R M +
Sbjct: 592 PRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGV 651
Query: 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
L++MK P + TY ++ + R+ DFG S+
Sbjct: 652 LDYMKERGFTPSMATYNSLMYMH-----SRSADFGKSE 684
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 6/271 (2%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
LV +KS+G+ PD T L+ C EA V+EE+ ++ F + L+D YG
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYG 325
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
+ E + +++++ Y+ IS + + G L+ +M +G D
Sbjct: 326 KSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI---RAVSFTYLKERKFFMLGEFL 242
T + + R G ++E+A + R+ K I A Y KF + +
Sbjct: 386 TYTTLLSGFERAG---KVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
++ + + WN LL + N + F M AGF P+ TFN A+SR
Sbjct: 443 DEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
F M V PDL TY V+ A
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA 533
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 113/300 (37%), Gaps = 35/300 (11%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
+K G +P+ T L+ Y+ G +A V+ +L + + + ++ A R G
Sbjct: 480 MKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGM 539
Query: 130 FNE---IISIIDQVSCRNADLL---------------------PEVYSRAIS-------- 157
+ + +++ ++ C+ +L EVYS I
Sbjct: 540 WEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKT 599
Query: 158 ---CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
K L E E+ RGFS D T N+ + Y R + + +K
Sbjct: 600 LVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERG 659
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274
++ + + + F E LR++ + +N ++ +Y N +M+
Sbjct: 660 FTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDAS 719
Query: 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R F M +G PD+ T+N +++ SMF + + +M P+ TY +VD Y
Sbjct: 720 RIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/391 (20%), Positives = 156/391 (39%), Gaps = 77/391 (19%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A ++ LG++ + A + N ++ +G D + +L+ +AN+G EA V++++
Sbjct: 177 AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 108 SSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQVS-----------------CRNADLLP 149
++ + +++ +G++G +N+I S+++++ C+ L
Sbjct: 237 DGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQ 296
Query: 150 E------------------VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
E Y+ + +GK + + L EMV GFS T N+ I
Sbjct: 297 EAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLI 356
Query: 192 IYYSRFGSLTE-METAYGRLKRSRHLIDKEGIRAVSFTYL----------KERKFFMLGE 240
Y+R G L E ME ++ + ++G + FTY K + E
Sbjct: 357 SAYARDGMLDEAMEL--------KNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFE 408
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
+R+ G + ++ +N + Y K + + F ++ G PD+ T+N F
Sbjct: 409 EMRNAGC-KPNI--CTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFG 465
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG----------RNLDFGLSKM 350
+ M ++ + MK P+ T+ ++ AY R G R LD G+
Sbjct: 466 QNGMDSEVSGVFKEMKRAGFVPERETFNTLISAY--SRCGSFEQAMTVYRRMLDAGV--- 520
Query: 351 NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFL 381
+P +ST V A +G SE L
Sbjct: 521 ----TPDLSTYNTVLAALARGGMWEQSEKVL 547
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 102/265 (38%), Gaps = 38/265 (14%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
DNS + ++ G V A ++ L F L V + L+ A+ G + E +++
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVF 231
Query: 138 DQVSCRNADLLPEVYSRAISCFGKQG-QLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
++ Y+ ++ FGK G + + +++M S G + D+ T N I R
Sbjct: 232 KKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKR 291
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
G L + + +E ++A F+Y K +
Sbjct: 292 -----------GSLHQEAAQVFEE-MKAAGFSYDK-----------------------VT 316
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+N LL Y + + K + M GF P + T+N A++R M + M
Sbjct: 317 YNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA 376
Query: 317 HESVGPDLVTYGCVVDAYLDKRLGR 341
+ PD+ TY ++ + +R G+
Sbjct: 377 EKGTKPDVFTYTTLLSGF--ERAGK 399
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 66/170 (38%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ K+ L H L V S + P L L+L + + EA+ + EL
Sbjct: 564 SLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER 623
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
F + L+ ++ YGR + ++D + R Y+ + +
Sbjct: 624 GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKS 683
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
E L+E++++G D + N I Y R + + + ++ S + D
Sbjct: 684 EEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPD 733
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 152/357 (42%), Gaps = 51/357 (14%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-SSFVL 112
LG K+P A L + SEGL P +L+ Y + + +A E + S S
Sbjct: 104 LGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKP 163
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
V + L+ ++G F+ + SI+ ++S Y+ I +GK G E ME+ L
Sbjct: 164 DVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVL 223
Query: 173 KEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
+M+ G S+ D T N+ I Y ++ +ME+ Y R
Sbjct: 224 ADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSR---------------------- 261
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY--AGNFKMKSLQREFMRMSEAGFHPDL 289
F ++G + D+ +N+L+LS+ AG +K +FM + F
Sbjct: 262 ---FQLMGV--------QPDITT--FNILILSFGKAGMYKKMCSVMDFME--KRFFSLTT 306
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349
T+NI F + + MK++ V P+ +TY +V+AY L +D L +
Sbjct: 307 VTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQ 366
Query: 350 MNLDDSPVVSTDPY---VFEAFGK-GDFHSSSEAFLEFKRQR----KWTYRKLIAVY 398
+ +S VV P+ + A+G+ GD + E +++ + ++ K T+ +I Y
Sbjct: 367 --IVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY 421
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 125/315 (39%), Gaps = 49/315 (15%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + +G++P+ T ++ Y G EA ++ + + V + + ++
Sbjct: 370 AAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLS 429
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G+ NE+I ++ + ++ ++ G +G + + +EM S GF
Sbjct: 430 LLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEP 489
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY------------- 229
D T N I Y R GS + YG + R+ G A TY
Sbjct: 490 DRDTFNTLISAYGRCGSEVDASKMYGEMTRA-------GFNACVTTYNALLNALARKGDW 542
Query: 230 ---------LKERKF--------FMLGEFLRDVG-LGRKDLGNLL--------WNLLLLS 263
+K + F ML + + LG + + N + W LL
Sbjct: 543 RSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTL 602
Query: 264 YAGNFKMKSL---QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
NFK ++L +R F + G+ PD+ FN F+R +M+ LE ++ + +
Sbjct: 603 LLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGL 662
Query: 321 GPDLVTYGCVVDAYL 335
PDLVTY ++D Y+
Sbjct: 663 SPDLVTYNSLMDMYV 677
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 137/331 (41%), Gaps = 14/331 (4%)
Query: 30 DLARKIIRYRKQEGFVD--CA--SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A K+ K+ G V C +++ LG+K + + +++ +KS G P+ +T +
Sbjct: 403 DEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTM 462
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
+ N G V+ E+ S F + L+ AYGR G + + +++
Sbjct: 463 LALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGF 522
Query: 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205
+ Y+ ++ ++G EN + +M S+GF + + + Y++ G+ +E
Sbjct: 523 NACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIER 582
Query: 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK-----DLGNLLWNLL 260
R+K + +R + K R L R L +K D+ +++N +
Sbjct: 583 IENRIKEGQIFPSWMLLRTLLLANFKCRA---LAGSERAFTLFKKHGYKPDM--VIFNSM 637
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L + N + + E G PDL T+N + R W L+ ++ +
Sbjct: 638 LSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQL 697
Query: 321 GPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN 351
PDLV+Y V+ + + L + LS+M
Sbjct: 698 KPDLVSYNTVIKGFCRRGLMQEAVRMLSEMT 728
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 120/315 (38%), Gaps = 35/315 (11%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G K +++ +KS G PD T L+ Y G ++A ++ E+ + F V
Sbjct: 467 GNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACV 526
Query: 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ---LELMENT 171
+ L++A R G + ++I + + YS + C+ K G +E +EN
Sbjct: 527 TTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENR 586
Query: 172 LKE-------MVSR-------------------------GFSVDSATGNAFIIYYSRFGS 199
+KE M+ R G+ D N+ + ++R
Sbjct: 587 IKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNM 646
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
+ E ++ D ++ Y++ + + E L+ + + + +N
Sbjct: 647 YDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNT 706
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
++ + M+ R M+E G P + T+N ++ M MF ++ +E M
Sbjct: 707 VIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKND 766
Query: 320 VGPDLVTYGCVVDAY 334
P+ +T+ VVD Y
Sbjct: 767 CRPNELTFKMVVDGY 781
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/165 (18%), Positives = 68/165 (41%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ +++ +GL PD T +LM Y G +A+ + + L S + + ++
Sbjct: 650 AEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIK 709
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ R G E + ++ +++ R Y+ +S + G +E+ ++ M
Sbjct: 710 GFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRP 769
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ T + Y R G +E ++K D + I+ ++
Sbjct: 770 NELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPCFDDQSIQRLAL 814
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 70/352 (19%), Positives = 133/352 (37%), Gaps = 48/352 (13%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL----SSSFVLSVQVLSDLMDA 123
++VKSE L D L +L+ ++G A ++E L+ S + L QV+ +
Sbjct: 128 DSVKSELLRTD---LVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRI 184
Query: 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183
GR ++ ++D++ + L Y+ + + + G+ E + + M G S
Sbjct: 185 LGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPT 244
Query: 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243
T N + +G++ RS RK + + +R
Sbjct: 245 LVTYNVIL-------------DVFGKMGRSW------------------RKILGVLDEMR 273
Query: 244 DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
GL + +L + A ++ + F + G+ P T+N F +
Sbjct: 274 SKGL---KFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAG 330
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS-PVVSTDP 362
++ + L+ M+ S D VTY +V AY+ + + M P T
Sbjct: 331 VYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYT 390
Query: 363 YVFEAFGK-GDFHSSSEAFLEFKR----QRKWTYRKLIAVYLKKQLRRNQIF 409
V +A+GK G + + F K TY ++++ L K+ R N++
Sbjct: 391 TVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSL-LGKKSRSNEMI 441
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
Length = 1440
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 125/296 (42%), Gaps = 15/296 (5%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGL-LPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
C S+V + P AHQ+VN +++G + ++ Y +A+ V L
Sbjct: 719 CKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNL 778
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165
S ++ + LM AY + GC+ +I + + E + + G+L
Sbjct: 779 RQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRL 838
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
E + ++E+ GF + ++ + ++R G++ E++ Y +K + +L IR
Sbjct: 839 EELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYL---PTIR-- 893
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGN-------LLWNLLLLSYAGNFKMKSLQREFM 278
Y + G+ +RD + ++ +WN +L Y K + +
Sbjct: 894 --LYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQ 951
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
R+ E G PD TT+N + + R + +L ++ M++ + P L TY ++ A+
Sbjct: 952 RIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAF 1007
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 146/344 (42%), Gaps = 24/344 (6%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A + NT+ +G P ++ L+ +G + E VV EEL F +S + ++D
Sbjct: 806 ARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLD 865
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
A+ R G E+ I S + A LP + Y I K ++ E + EM F
Sbjct: 866 AFARAGNIFEVKKIYS--SMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANF 923
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FM 237
V+ A N+ + Y+ + Y R+K + D+ + Y ++R+ ++
Sbjct: 924 KVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYL 983
Query: 238 LGEFLRDVGLGRK-DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRA 296
L + +R++GL K D + L+ ++ ++ ++ F + G D + ++
Sbjct: 984 LMQQMRNLGLDPKLD----TYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMM 1039
Query: 297 VAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSP 356
L+ MK+ + P L T ++ +Y + + LS NL D+
Sbjct: 1040 KISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLS--NLKDTE 1097
Query: 357 V-VSTDPY--VFEAFGKG-DFHSSSEAFLEFKRQ------RKWT 390
V ++T PY V +A+ + D++S E LE K++ R WT
Sbjct: 1098 VELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWT 1141
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/278 (17%), Positives = 110/278 (39%), Gaps = 7/278 (2%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL----SSSFVLSVQVLS 118
A +LV+ ++ G +PD + L+ +G + V ELL +S +
Sbjct: 244 AQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAV--ELLDMVRNSGLRPDAITYN 301
Query: 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178
L+ A R + + + + + Y+ IS +G+ G E E+ +
Sbjct: 302 TLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELK 361
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF D+ T N+ + ++R + +++ Y ++++ D+ + Y K+ + +
Sbjct: 362 GFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421
Query: 239 GEFLRDV-GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
+ +D+ GL ++ + + +L+ S + M + G P L T++
Sbjct: 422 LQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALIC 481
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+++ + + M PD + Y ++D L
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLL 519
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/262 (18%), Positives = 97/262 (37%), Gaps = 44/262 (16%)
Query: 114 VQVLSDLMDAYGRIGCFN---EIISIIDQVSC---------------------------- 142
VQV + +M Y R G F+ E++ + Q C
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284
Query: 143 ----RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
RN+ L P+ Y+ +S + L+ ++M + D T NA I Y R
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGR 344
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF---LRDVGLGRKDLG 253
G E E + L+ D ++ + + +ER + E ++ +G G+ +
Sbjct: 345 CGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDE-- 402
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSE-AGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+ +N ++ Y ++ + + M +G +PD T+ + + + + + +
Sbjct: 403 -MTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALM 461
Query: 313 EHMKHESVGPDLVTYGCVVDAY 334
M + P L TY ++ Y
Sbjct: 462 SEMLDVGIKPTLQTYSALICGY 483
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/377 (19%), Positives = 141/377 (37%), Gaps = 40/377 (10%)
Query: 50 LVEDL----GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
LV D+ + P A QL+ ++ GL +TL +++ A++G LEA+ ++EEL
Sbjct: 271 LVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEEL 330
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN--------------------- 144
S + + L+ Y + G + S++ ++ R
Sbjct: 331 RQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRW 390
Query: 145 ------------ADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
D+ P V+SR ++ F +G+ + LKEM S G D N
Sbjct: 391 ESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVV 450
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
I + +F L T + R+ D+ + + K + + E +
Sbjct: 451 IDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGC 510
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
+N+++ SY + ++R +M G P++ T + + F D
Sbjct: 511 LPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIE 570
Query: 311 SLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPYVFEAFG 369
LE MK + P Y +++AY + L M D P + + AFG
Sbjct: 571 CLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFG 630
Query: 370 KGDFHSSSEAFLEFKRQ 386
+ + + A L++ ++
Sbjct: 631 EDRRDAEAFAVLQYMKE 647
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 37/309 (11%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-----SSFVLS---- 113
A +V+ ++ G+ PD T L+ Y N G A++V +E+ + +SFV S
Sbjct: 358 AESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLA 417
Query: 114 -----------VQVLSDL---------------MDAYGRIGCFNEIISIIDQVSCRNADL 147
QVL ++ +D +G+ C + ++ D++ +
Sbjct: 418 GFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEP 477
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
++ I C K G+ + E + M RG + T N I Y +M+
Sbjct: 478 DRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLL 537
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV-GLGRKDLGNLLWNLLLLSYAG 266
G++K L + + Y K +F E L ++ +G K + ++N L+ +YA
Sbjct: 538 GKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKP-SSTMYNALINAYAQ 596
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ F M+ G P L N AF + L++MK V PD+VT
Sbjct: 597 RGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVT 656
Query: 327 YGCVVDAYL 335
Y ++ A +
Sbjct: 657 YTTLMKALI 665
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 120/302 (39%), Gaps = 37/302 (12%)
Query: 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94
+I + + +LV L R+K H L++ V+ GL PD A++ + +G
Sbjct: 345 LIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGN 404
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VY 152
+ +A ++E++ S + + L+ YG+IG E ++D + R+ L P
Sbjct: 405 LDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMM-LRDEMLQPNDRTC 463
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ + + Q ++E N + +M S G D T N Y+R GS E + R
Sbjct: 464 NILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPR 521
Query: 213 SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
H K +R ++ Y KM+
Sbjct: 522 MLHNKVKPNVRTCG--------------------------------TIVNGYCEEGKMEE 549
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332
R F RM E G HP+L FN F ++ + ++ M+ V PD+VT+ +++
Sbjct: 550 ALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 609
Query: 333 AY 334
A+
Sbjct: 610 AW 611
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 56/296 (18%), Positives = 117/296 (39%), Gaps = 14/296 (4%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQ-VVWEEL 105
C LV+ ++K A +V ++S G+ PD T L YA G A+ ++ +
Sbjct: 463 CNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRM 522
Query: 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQG 163
L + +V+ +++ Y G E + ++ + + P V++ I F
Sbjct: 523 LHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRM--KELGVHPNLFVFNSLIKGFLNIN 580
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
++ + + M G D T + + +S G + E Y + D
Sbjct: 581 DMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFS 640
Query: 224 AVSFTYLK----ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
++ Y + E+ +L + +R G+ R ++ +++ ++ + +MK + + +
Sbjct: 641 ILAKGYARAGEPEKAEQILNQ-MRKFGV-RPNV--VIYTQIISGWCSAGEMKKAMQVYKK 696
Query: 280 MSE-AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M G P+LTT+ F W L+ M+ ++V P T + D +
Sbjct: 697 MCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIADGW 752
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 146/348 (41%), Gaps = 51/348 (14%)
Query: 13 KFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCAS-LVEDLGRKKKPHLAHQLVNTVK 71
+F P +Q ++ +K+ R K G+V+ + + DL KK+ A ++ + ++
Sbjct: 56 EFPGITEPVNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLR 115
Query: 72 SEGLL-PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130
+ P T L++ +G AQ +++E+L +V++ + L+ AY R
Sbjct: 116 EQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLI 175
Query: 131 NEIISIIDQV----SCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDS 184
++ SI+D++ C+ P+V YS + Q +L+++ KEM R + ++
Sbjct: 176 DDAFSILDKMKSFPQCQ-----PDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNT 230
Query: 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244
T N + Y R G +ME +L + L
Sbjct: 231 VTQNIVLSGYGRVGRFDQMEK-------------------------------VLSDMLVS 259
Query: 245 VGLGRKDLGNLLWNL-LLLSYAGNF-KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+ D +W + ++LS GN K+ ++ + + G P+ TFNI ++ +
Sbjct: 260 TAC-KPD----VWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKK 314
Query: 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
M+ + +E+M+ TY +++A+ D +N++ +M
Sbjct: 315 RMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQM 362
Score = 38.5 bits (88), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 71/354 (20%), Positives = 136/354 (38%), Gaps = 88/354 (24%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
D+ R+ Y+ +EG L+ LG+ +P+ A +L + + EGL P AL+ Y
Sbjct: 112 DMLREQTFYQPKEGTY--MKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAY 169
Query: 90 ANNGFVLEAQVVWEELLS------SSFVLSVQVLS-------DLMDA------------- 123
+ + +A + +++ S F S + + DL+D+
Sbjct: 170 TRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPN 229
Query: 124 ----------YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI--SCFGKQGQLELMENT 171
YGR+G F+++ ++ + A P+V++ I S FG G++++ME+
Sbjct: 230 TVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTA-CKPDVWTMNIILSVFGNMGKIDMMESW 288
Query: 172 LKEMVSRGFSVDSATGNAFIIYY-------------------------SRFGSLTEMETA 206
++ + G ++ T N I Y S + ++ E
Sbjct: 289 YEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFAD 348
Query: 207 YGRLKRSRHLIDK---EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL-------- 255
G K D+ EG++A + T F L + GL K + ++
Sbjct: 349 VGDAKNMELTFDQMRSEGMKADTKT------FCCLINGYANAGLFHKVISSVQLAAKFEI 402
Query: 256 -----LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+N ++ + A + ++R ++RM E D TF I A+ + M
Sbjct: 403 PENTAFYNAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGM 456
>sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825,
chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2
SV=2
Length = 904
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 118/273 (43%), Gaps = 2/273 (0%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL-LSSSFVLSVQVLSDLM 121
A +L +KS G++ D ++ Y G + EA V E + V V + D++
Sbjct: 577 AEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDML 636
Query: 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181
Y + +++ + ++ E+Y+ I+C + L+ + T +EM+ GF+
Sbjct: 637 RIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGFT 696
Query: 182 VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241
++ T N + Y + ++ + KR ++D + Y K + + +
Sbjct: 697 PNTVTFNVLLDVYGKAKLFKKVNELFLLAKR-HGVVDVISYNTIIAAYGKNKDYTNMSSA 755
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
++++ + +N LL +Y + +M+ + RM ++ PD T+NI +
Sbjct: 756 IKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGE 815
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
++ L+ +K +GPDL +Y ++ AY
Sbjct: 816 QGWIDEVADVLKELKESGLGPDLCSYNTLIKAY 848
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 4/157 (2%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
+K LA + + + G+ P+ +T+ LM Y N V EA+ + + V
Sbjct: 222 KKGNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCE-S 280
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175
S ++ Y R+ +++ +ID + L E + ++ + +QG++EL E+ L M
Sbjct: 281 AYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSM 340
Query: 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ GFS + N I Y G + +ME A G R
Sbjct: 341 EAAGFSPNIIAYNTLITGY---GKIFKMEAAQGLFHR 374
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 122/308 (39%), Gaps = 10/308 (3%)
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
+S L ++ Y G + V + + L+ S L+ AY + G ++ + ++
Sbjct: 453 SSILGIILQAYEKVGKIDVVPCVLKGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCLGLLR 512
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+ R++ +Y I + GQL + ++ + I Y+ G
Sbjct: 513 EKKWRDSAFESHLYHLLICSCKESGQLTDAVKIYNHKMESDEEINLHITSTMIDIYTVMG 572
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL-LW 257
+E E Y LK S ++D+ G V Y+K L + + + ++ L+
Sbjct: 573 EFSEAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLF 632
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
+L Y LQ + R+ ++G H + +N +R +L + E M
Sbjct: 633 RDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIR 692
Query: 318 ESVGPDLVTYGCVVDAYLDKRLGRNLD--FGLSKMNLDDSPVVSTDPY--VFEAFGKG-D 372
P+ VT+ ++D Y +L + ++ F L+K + VV Y + A+GK D
Sbjct: 693 YGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRH----GVVDVISYNTIIAAYGKNKD 748
Query: 373 FHSSSEAF 380
+ + S A
Sbjct: 749 YTNMSSAI 756
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 1/134 (0%)
Query: 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218
+ K +E E M G +SA ++ I Y+R + E +K+ R +
Sbjct: 255 YQKNWNVEEAEFAFSHMRKFGIVCESAY-SSMITIYTRLRLYDKAEEVIDLMKQDRVRLK 313
Query: 219 KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
E + Y ++ K + L + + +N L+ Y FKM++ Q F
Sbjct: 314 LENWLVMLNAYSQQGKMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFH 373
Query: 279 RMSEAGFHPDLTTF 292
R+ G PD T++
Sbjct: 374 RLCNIGLEPDETSY 387
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 116/274 (42%), Gaps = 10/274 (3%)
Query: 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114
G+ K +++ +L ++S P+ T AL+ +A G +A+ ++E+L V
Sbjct: 275 GKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDV 334
Query: 115 QVLSDLMDAYGRIG---CFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELME 169
V + LM++Y R G EI S++ + C P+ Y+ + +G+ G E
Sbjct: 335 YVYNALMESYSRAGYPYGAAEIFSLMQHMGCE-----PDRASYNIMVDAYGRAGLHSDAE 389
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+EM G + + + YS+ +T+ E + + D + ++ Y
Sbjct: 390 AVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLY 449
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
+ +F + + L ++ G +N+L+ Y ++ ++ F+ + E F PD+
Sbjct: 450 GRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDV 509
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
T+ R A+SR ++ E M PD
Sbjct: 510 VTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPD 543
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 5/283 (1%)
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
L SSF V + L+DAYG+ + E S+ Q+ + Y+ I + G
Sbjct: 146 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 205
Query: 165 LELMENTLKEMVSRGFS---VDSATGNAFII-YYSRFGSLTEMETAYGRLKRSRHLIDKE 220
+E E L EM + S + NA+I R G+ E + R+KR R E
Sbjct: 206 IERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTE 265
Query: 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
+ Y K K +M + ++ + + L+ ++A + + F ++
Sbjct: 266 TYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQL 325
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
E G PD+ +N ++SR + M+H PD +Y +VDAY L
Sbjct: 326 QEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLH 385
Query: 341 RNLDFGLSKMN-LDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382
+ + +M L +P + + + A+ K + EA ++
Sbjct: 386 SDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVK 428
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 76/163 (46%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+E R P+ A ++ + ++ G PD ++ ++ Y G +A+ V+EE+
Sbjct: 339 ALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL 398
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+++ L+ AY + + +I+ ++S + V + ++ +G+ GQ M
Sbjct: 399 GIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKM 458
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
E L EM + + D +T N I Y + G L +E + LK
Sbjct: 459 EKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELK 501
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/295 (18%), Positives = 118/295 (40%), Gaps = 14/295 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
+SL+ L K +++ + ++PD T AL+ + G +LEA+ ++ E+++
Sbjct: 284 SSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT 343
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ L+D + + C +E + D + + + YS I+ + K +++
Sbjct: 344 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDD 403
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+E+ S+G ++ T N ++ + + G L + + + G+
Sbjct: 404 GMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV-------SRGVPPSVV 456
Query: 228 TY-------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
TY + E + R LG ++N+++ K+ F +
Sbjct: 457 TYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSL 516
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
S+ G PD+ T+N+ + + + MK + PD TY ++ A+L
Sbjct: 517 SDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHL 571
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/309 (20%), Positives = 130/309 (42%), Gaps = 6/309 (1%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM--LC 88
L +++ +++ V ++L+ L K + A L++ + G PD T ++ LC
Sbjct: 162 LVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 221
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+ N + A ++ ++ + SV S ++D+ + G F++ +S+ +++ +
Sbjct: 222 KSGNSAL--ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
Query: 149 PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
YS I G+ + L+EM+ R D T +A I + + G L E + Y
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGN 267
+ D ++ + KE + D+ + + +++ +++L+ SY
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKA 398
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
++ R F +S G P+ T+N + F + + M V P +VTY
Sbjct: 399 KRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTY 458
Query: 328 GCVVDAYLD 336
G ++D D
Sbjct: 459 GILLDGLCD 467
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 115/292 (39%), Gaps = 26/292 (8%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
RKKK A ++ G PD T L+ NGF LE +V L V Q
Sbjct: 117 RKKKLLFAFSVLGRAWKLGYEPDTITFSTLV-----NGFCLEGRVSEAVALVDRMVEMKQ 171
Query: 116 -----VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMEN 170
+S L++ G +E + +ID++ Y ++ K G L +
Sbjct: 172 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 231
Query: 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY- 229
++M R + I + GS + + + + + +GI+A TY
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM-------EMKGIKADVVTYS 284
Query: 230 ------LKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSE 282
+ K+ + LR++ +GR + +++ ++ L+ + K+ + + M
Sbjct: 285 SLIGGLCNDGKWDDGAKMLREM-IGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT 343
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
G PD T+N F + + + + + M + PD+VTY ++++Y
Sbjct: 344 RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSY 395
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 115/289 (39%), Gaps = 6/289 (2%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L + K A + + +EGL PD+ T L+ Y G V A+ + + + +
Sbjct: 291 NLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFN 350
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
FV L+D G N +++ ++ + +Y+ I QG +
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEA 410
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
EM +G + T N + + G +++ + + + D +
Sbjct: 411 AQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470
Query: 229 Y---LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
Y LK + + + D G+ D +N LL K + + + M E G
Sbjct: 471 YSTQLKMENALEILDVMLDNGV---DPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGC 527
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
P+L TFNI + R + LE MK++SV PD VT+G ++D +
Sbjct: 528 APNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGF 576
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 124/322 (38%), Gaps = 51/322 (15%)
Query: 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ 115
+ +PH A +L+N + S+G + C ++ + F E ++ ++L+S L +
Sbjct: 158 KTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLS 217
Query: 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS------------------RAIS 157
+ L+ + G E ++D+V R +LP +++ R +
Sbjct: 218 TFNKLLRVLCKKGDVKECEKLLDKVIKRG--VLPNLFTYNLFIQGLCQRGELDGAVRMVG 275
Query: 158 CFGKQG-------------------QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
C +QG + + E L +MV+ G DS T N I Y + G
Sbjct: 276 CLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGG 335
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN---- 254
+ E G + + D+ R++ E GE R + L + LG
Sbjct: 336 MVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHE------GETNRALALFNEALGKGIKP 389
Query: 255 --LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
+L+N L+ + + + MSE G P++ TFNI +M D +
Sbjct: 390 NVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLV 449
Query: 313 EHMKHESVGPDLVTYGCVVDAY 334
+ M + PD+ T+ ++ Y
Sbjct: 450 KVMISKGYFPDIFTFNILIHGY 471
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 127/319 (39%), Gaps = 25/319 (7%)
Query: 31 LARKIIRYRKQEGFVDCA----SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM 86
LA +I+ GFV SL++ L + + + A L N +G+ P+ L+
Sbjct: 339 LAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
+N G +LEA + E+ + VQ + L++ ++GC ++ ++ + +
Sbjct: 399 KGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG-- 456
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLK---EMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203
P++++ I G QL+ MEN L+ M+ G D T N+ + + ++
Sbjct: 457 YFPDIFTFNILIHGYSTQLK-MENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDV 515
Query: 204 ETAYGRLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDVGLGRKDLGNLL 256
Y + +++K G FT+ + RK L ++ + +
Sbjct: 516 METY------KTMVEK-GCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVT 568
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEA-GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315
+ L+ + N + F +M EA T+NI AF+ + M
Sbjct: 569 FGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEM 628
Query: 316 KHESVGPDLVTYGCVVDAY 334
+GPD TY +VD +
Sbjct: 629 VDRCLGPDGYTYRLMVDGF 647
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 115/294 (39%), Gaps = 17/294 (5%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ L + A QL N + +GL+P+ T L+ G V +A + + ++S
Sbjct: 396 TLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 455
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLE 166
+ + + L+ Y + I+D + D P+VY+ ++ K + E
Sbjct: 456 GYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVD--PDVYTYNSLLNGLCKTSKFE 513
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ T K MV +G + + T N + R+ L E A G L+ ++ AV+
Sbjct: 514 DVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDE---ALGLLEEMKN--KSVNPDAVT 568
Query: 227 FTYLKERKFFMLGEFLRDVGLGRK-------DLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
F L + F G+ L RK +N+++ ++ + ++ F
Sbjct: 569 FGTLID-GFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQE 627
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
M + PD T+ + F + + L M P L T G V++
Sbjct: 628 MVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINC 681
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 136/343 (39%), Gaps = 41/343 (11%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L R+ + Y+ G L+ LG+ K+P AH+L + +EG + ++ AL+ Y
Sbjct: 138 ELLREQLWYKPNVGIY--VKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAY 195
Query: 90 ANNGFVLEAQVVWEELLSS---------------------SFVLSVQVLSD--------- 119
+ +G A + E + SS +F +LSD
Sbjct: 196 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPN 255
Query: 120 ------LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLELMENT 171
L+DAYG+ F E+ S + Q+ + D P+ ++ + FG GQ+E+MEN
Sbjct: 256 TITYNTLIDAYGKAKMFVEMESTLIQMLGED-DCKPDSWTMNSTLRAFGGNGQIEMMENC 314
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231
++ S G + T N + Y + G+ +M +++ + V + +
Sbjct: 315 YEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGR 374
Query: 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291
+ R + R + L+ +Y K + + + DL
Sbjct: 375 AGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVF 434
Query: 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
FN A+ RM F ++ LE M+ + PD +TY +V AY
Sbjct: 435 FNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAY 477
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 116/294 (39%), Gaps = 42/294 (14%)
Query: 29 GDLARKIIRYRKQEGFVDCASLVEDLGRKKK-PHLAHQLVNTVKSEGLLPDNSTLCALML 87
D+ R+ IR + +L++ G+ K + L+ + + PD+ T+ + +
Sbjct: 245 SDMRRQGIR----PNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLR 300
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+ NG + + +E+ SS +++ + L+D+YG+ G + ++ ++++ + +
Sbjct: 301 AFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSW 360
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I FG+ G L+ ME + M S T L + AY
Sbjct: 361 TIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVT-------------LCSLVRAY 407
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
GR ++ DK +G LR + L + +N L+ +Y
Sbjct: 408 GRASKA----DK------------------IGGVLRFIENSDIRLDLVFFNCLVDAYGRM 445
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321
K ++ M + GF PD T+ A+ M H+ H ESVG
Sbjct: 446 EKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGM--TTHVKELHGVVESVG 497
Score = 35.0 bits (79), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345
PD+ T++I +F ++ F + L M+ + + P+ +TY ++DAY ++ ++
Sbjct: 218 QPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMES 277
Query: 346 GLSKMNLDD--SPVVSTDPYVFEAFG 369
L +M +D P T AFG
Sbjct: 278 TLIQMLGEDDCKPDSWTMNSTLRAFG 303
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 4/253 (1%)
Query: 73 EGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132
E P+ T L+ +A +G V + ++++L S V + +MDAYG+ G E
Sbjct: 202 ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKE 261
Query: 133 IISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
+ +++ ++ R+ + P++ ++ I +GK+ + E ME T K ++ T N+
Sbjct: 262 MEAVLTRM--RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSM 319
Query: 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250
II Y + + + E + ++ ++ + Y E +VG +
Sbjct: 320 IINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDR 379
Query: 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHL 310
L N +L Y N + F S HPD +T+ A+++ M + +
Sbjct: 380 VLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQI 439
Query: 311 SLEHMKHESVGPD 323
++ M+ + + P+
Sbjct: 440 LMKKMEKDGIVPN 452
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 45/247 (18%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
VYS+ IS GK+GQ + EM + G D++ NA I
Sbjct: 135 VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALI------------------- 175
Query: 211 KRSRHLIDKEGIRAVSFT--YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+ HL ++ +A+ YL + K G+ R + +N+LL ++A +
Sbjct: 176 --TAHLHTRDKAKALEKVRGYLDKMK-----------GIERCQPNVVTYNILLRAFAQSG 222
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
K+ + F + + PD+ TFN A+ + M ++ L M+ PD++T+
Sbjct: 223 KVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFN 282
Query: 329 CVVDAYLDKRLGRNLDFGL-SKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQR 387
++D+Y K+ ++ S M + P + T + +GK +E
Sbjct: 283 VLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAE--------- 333
Query: 388 KWTYRKL 394
W ++K+
Sbjct: 334 -WVFKKM 339
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/299 (18%), Positives = 111/299 (37%), Gaps = 51/299 (17%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTV-KSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105
C L E+LG+ K ++ + K +PDN L+ G A ++ E+
Sbjct: 100 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEM 159
Query: 106 LSSSFVLSVQVLSDLMDAY----GRIGCFNEIISIIDQVS----CRNADLLPEV--YSRA 155
+S V + L+ A+ + ++ +D++ C+ P V Y+
Sbjct: 160 KNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQ-----PNVVTYNIL 214
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
+ F + G+++ + K++ S D T N + Y + G + EME R++ +
Sbjct: 215 LRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSN-- 272
Query: 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQR 275
E D+ + +N+L+ SY + + +++
Sbjct: 273 ------------------------ECKPDI---------ITFNVLIDSYGKKQEFEKMEQ 299
Query: 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
F + + P L TFN + + + M + M + P +TY C++ Y
Sbjct: 300 TFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMY 358
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/266 (19%), Positives = 110/266 (41%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
++ +K +G++ + T LM NG + +A+ +++E+ V V + L+
Sbjct: 281 VLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNC 340
Query: 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
R G + D+++ + Y I K G++ E + EM S+G ++
Sbjct: 341 RKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQV 400
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
N I Y R G + E Y +++ D ++ + + +++ ++L +
Sbjct: 401 VFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRM 460
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
G L + + L+ Y ++ +R F+ MS G P+ T+N+ A+ +
Sbjct: 461 MEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKI 520
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVV 331
+ +M+ + PD TY ++
Sbjct: 521 KEARKLRANMEANGMDPDSYTYTSLI 546
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/371 (20%), Positives = 148/371 (39%), Gaps = 24/371 (6%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L K+ + + + V +++++ L + + A L + ++G+ PD T +L+ C
Sbjct: 226 NLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
N G +A + ++L +V + L+DA+ + G E + D++ R+ D
Sbjct: 286 CNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNI 345
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
Y+ I+ F +L+ + MVS+ D T N I + + + + +
Sbjct: 346 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRD 405
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN-------LLWNLLLL 262
+ R G+ + TY F + + K + + + +N LL
Sbjct: 406 MSR-------RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLD 458
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF---WDLHLSLEHMKHES 319
N K++ F + ++ PD+ T+NI + + WDL SL +
Sbjct: 459 GLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLS---LKG 515
Query: 320 VGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY---VFEAFGKGDFHSS 376
V PD++ Y ++ + K L KM +D P+ + Y + GD +S
Sbjct: 516 VKPDVIAYNTMISGFCKKGLKEEAYTLFIKMK-EDGPLPDSGTYNTLIRAHLRDGDKAAS 574
Query: 377 SEAFLEFKRQR 387
+E E + R
Sbjct: 575 AELIKEMRSCR 585
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/327 (19%), Positives = 127/327 (38%), Gaps = 12/327 (3%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
TF+ +HG F+ H + L +++ Q V +++ L ++ +P L
Sbjct: 172 TFTTLVHGLFQ--------HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDL 223
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A L+N ++ + D ++ V +A ++ E+ + V S L+
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLIS 283
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
G +++ ++ + R + ++ I F K+G+L E EM+ R
Sbjct: 284 CLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
+ T N+ I + L E + + + L D + + K +K E
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 243 RDVGLGRKDL-GN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
RD + R+ L GN + + L+ + + Q F +M G HP++ T+N
Sbjct: 404 RD--MSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 461
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTY 327
+ + E+++ + PD+ TY
Sbjct: 462 KNGKLEKAMVVFEYLQKSKMEPDIYTY 488
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+M E G+ PD TF + + + +E M + PDLVTYG V++
Sbjct: 160 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING 214
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/289 (19%), Positives = 111/289 (38%), Gaps = 33/289 (11%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+++ L ++K A +L N + L PD+ TL L+ + G + A +++++
Sbjct: 450 TILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEK 509
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
L V + L+D +G++G + I + + P YS ++ +G L
Sbjct: 510 RIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEA 569
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
EM+S+ N+ I Y R G+ ++ E+ ++ + D + +
Sbjct: 570 FRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYG 629
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
+++E + GL +K M + G PD
Sbjct: 630 FVREENMS------KAFGLVKK---------------------------MEEEQGGLVPD 656
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
+ T+N F R + + + L M V PD TY C+++ ++ +
Sbjct: 657 VFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQ 705
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 124/308 (40%), Gaps = 17/308 (5%)
Query: 44 FVDCAS-------LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVL 96
F +C S L+ + +K AH+ ++S+G AL+ G+V
Sbjct: 158 FSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVE 217
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSR 154
A V++E+ S ++V L+ +++A + G ++ + + QV + + P++ Y+
Sbjct: 218 LAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQV--QEKGVYPDIVTYNT 275
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214
IS + +G +E + M +GFS T N I + G + + + RS
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335
Query: 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW---NLLLLSYAGNFKMK 271
D R++ K+ + D+ R + +L+ + L + +GN K
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDM-RSRDVVPDLVCFSSMMSLFTRSGNLD-K 393
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+L F + EAG PD + I + R M M + D+VTY ++
Sbjct: 394 ALMY-FNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTIL 452
Query: 332 DAYLDKRL 339
+++
Sbjct: 453 HGLCKRKM 460
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/288 (18%), Positives = 111/288 (38%), Gaps = 8/288 (2%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
N+VK GL+PDN L+ Y G + A + E+L + V + ++ +
Sbjct: 399 NSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKR 458
Query: 128 GCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQGQLELMENTLKEMVSRGFSVDSA 185
E + ++++ R L P+ Y+ I G K G L+ ++M + +D
Sbjct: 459 KMLGEADKLFNEMTER--ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVV 516
Query: 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245
T N + + + G + + + + S+ ++ ++ L + + D
Sbjct: 517 TYNTLLDGFGKVGDIDTAKEIWADMV-SKEILPTPISYSILVNALCSKGHLAEAFRVWDE 575
Query: 246 GLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
+ + ++ N ++ Y + + +M GF PD ++N F R
Sbjct: 576 MISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREEN 635
Query: 305 FWDLHLSLEHMKHESVG--PDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350
++ M+ E G PD+ TY ++ + + + + L KM
Sbjct: 636 MSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM 683
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/354 (18%), Positives = 133/354 (37%), Gaps = 32/354 (9%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +L+ L R LA + + G+ + TL ++ +G + + ++
Sbjct: 203 CNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ 262
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + L+ AY G E +++ + + Y+ I+ K G+ E
Sbjct: 263 EKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYE 322
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+ EM+ G S DS T + ++ + G + E E + + RSR ++ V
Sbjct: 323 RAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDM-RSRDVVPD----LVC 377
Query: 227 FTYLKE--------RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278
F+ + K M +++ GL N+++ +L+ Y +
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD---NVIYTILIQGYCRKGMISVAMNLRN 434
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
M + G D+ T+N + M + M ++ PD T ++D + +
Sbjct: 435 EMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHC--K 492
Query: 339 LGRNLDFGLS--------KMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEF 383
LG NL + ++ LD V T + + FGK GD ++ E + +
Sbjct: 493 LG-NLQNAMELFQKMKEKRIRLD----VVTYNTLLDGFGKVGDIDTAKEIWADM 541
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 88/210 (41%), Gaps = 37/210 (17%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L +K+ R + V +L++ G+ A ++ + S+ +LP + L+
Sbjct: 501 ELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNAL 560
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--------------------- 128
+ G + EA VW+E++S + +V + + ++ Y R G
Sbjct: 561 CSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDC 620
Query: 129 -CFNEII-------------SIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTL 172
+N +I ++ ++ L+P+V Y+ + F +Q Q++ E L
Sbjct: 621 ISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVL 680
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
++M+ RG + D +T I + +LTE
Sbjct: 681 RKMIERGVNPDRSTYTCMINGFVSQDNLTE 710
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
+ +S +G ++ T NI A + + L ++ + V PD+VTY ++ AY
Sbjct: 223 YQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSS 282
Query: 337 KRLGRNLDFGLSKMNLDD----SPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKRQ----R 387
K L ++ MN SP V T V K G + + E F E R
Sbjct: 283 KGL---MEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPD 339
Query: 388 KWTYRKLIAVYLKK 401
TYR L+ KK
Sbjct: 340 STTYRSLLMEACKK 353
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 107/246 (43%), Gaps = 16/246 (6%)
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
+ YS + GK+ ++ + LKEM + G + T I R G + E AY
Sbjct: 224 QTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINE---AYEI 280
Query: 210 LKRSRHLIDKEGI--RAVSFTYLKE-----RKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
LKR +D EG V++T L + RK E + GR + + LL
Sbjct: 281 LKR----MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
++ N + S+++ + M + G PD+ TF I A + F + +L+ M+ + + P
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILP 396
Query: 323 DLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAF 380
+L TY ++ L RL L+ + +L P T + +GK GD S+ E F
Sbjct: 397 NLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 456
Query: 381 LEFKRQ 386
+ K +
Sbjct: 457 EKMKTK 462
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 137/324 (42%), Gaps = 27/324 (8%)
Query: 32 ARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
A +I++ EG V L++ L +K A ++ +K+ PD T L+
Sbjct: 277 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
+++N + + W E+ V V + L+DA + G F E +D + R+ +
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVM--RDQGI 394
Query: 148 LPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG-SLTEME 204
LP + Y+ I + +L+ M S G + T FI YY + G S++ +E
Sbjct: 395 LPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE 454
Query: 205 TAYGRLKRSRHLIDKEGIRAVSFTYLK---ERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
T + ++K + A ++ K +R+ + L+D+GL ++ +N+++
Sbjct: 455 T-FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD---SVTYNMMM 510
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF---SRMSMFWDLHLSLEHMKHE 318
Y+ ++ + M E G PD+ N R+ W + + ++ MK
Sbjct: 511 KCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK-- 568
Query: 319 SVGPDLVTYGCVVDAYLDKRLGRN 342
+ P +VTY ++ LG+N
Sbjct: 569 -LKPTVVTYNTLLAG-----LGKN 586
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 25 HPKNGDLARKIIRYRKQE------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD 78
+ K+GD + + K + V C + + L + + A Q+ +K GL+PD
Sbjct: 443 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 502
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
+ T +M CY+ G + EA + E++ + V V++ L++ + +E +
Sbjct: 503 SVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFM 562
Query: 139 QVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190
++ + L P V Y+ ++ GK G+++ + MV +G ++ T N
Sbjct: 563 RM--KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 107/273 (39%), Gaps = 37/273 (13%)
Query: 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120
+A + VKS G +PD +T L+ Y +G + E +++E+ + + + +
Sbjct: 802 EIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIV 861
Query: 121 MDAYGRIGCFNEIISI-IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
+ + G ++ + + D +S R+ Y I K G+L + + M+ G
Sbjct: 862 ISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYG 921
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239
+ A N I + FG E + A KR + KEG+R TY +L
Sbjct: 922 CRPNCAIYNILI---NGFGKAGEADAACALFKR----MVKEGVRPDLKTY------SVLV 968
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+ L V GR D G L Y F + E+G +PD+ +N+
Sbjct: 969 DCLCMV--GRVDEG--------LHY------------FKELKESGLNPDVVCYNLIINGL 1006
Query: 300 SRMSMFWDLHLSLEHMK-HESVGPDLVTYGCVV 331
+ + + MK + PDL TY ++
Sbjct: 1007 GKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI 1039
Score = 32.0 bits (71), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 3/151 (1%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ G+ + A L + EG+ PD T L+ C G V E ++EL S
Sbjct: 932 LINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLEL 167
V + +++ G+ E + + +++ + P++Y+ I G G +E
Sbjct: 992 LNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRG-ITPDLYTYNSLILNLGIAGMVEE 1050
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
E+ G + T NA I YS G
Sbjct: 1051 AGKIYNEIQRAGLEPNVFTFNALIRGYSLSG 1081
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/321 (21%), Positives = 127/321 (39%), Gaps = 16/321 (4%)
Query: 29 GDLARKIIRYRKQEGFVD----CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84
GD A + R G V + LVE G+ ++ L+ + S G LPD ++
Sbjct: 263 GDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNV 322
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
L+ YA +G + EA V+ ++ ++ + S L++ +G+ G ++++ + ++ N
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG------ 198
D Y+ I FG+ G + + +MV D T I + G
Sbjct: 383 TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDAR 442
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
+ + TA + S+ I A L E + +VG + ++
Sbjct: 443 KILQYMTANDIVPSSKAYTGV--IEAFGQAALYEEALVAFNT-MHEVG---SNPSIETFH 496
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318
LL S+A +K + R+ ++G + TFN + A+ + F + + M+
Sbjct: 497 SLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKS 556
Query: 319 SVGPDLVTYGCVVDAYLDKRL 339
PD T V+ Y RL
Sbjct: 557 RCDPDERTLEAVLSVYSFARL 577
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/315 (17%), Positives = 119/315 (37%), Gaps = 40/315 (12%)
Query: 70 VKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129
++ EG+ PD T L+ A G EA++V+ + V + S L++ +G++
Sbjct: 238 MRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297
Query: 130 FNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG 187
++ ++ +++ + LP++ Y+ + + K G ++ +M + G + ++ T
Sbjct: 298 LEKVCDLLGEMASGGS--LPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTY 355
Query: 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL 247
+ + + + G ++ + +K S
Sbjct: 356 SVLLNLFGQSGRYDDVRQLFLEMKSS---------------------------------- 381
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
D +N+L+ + K + F M E PD+ T+ A + + D
Sbjct: 382 -NTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHED 440
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN-LDDSPVVSTDPYVFE 366
L++M + P Y V++A+ L + M+ + +P + T +
Sbjct: 441 ARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLY 500
Query: 367 AFGKGDFHSSSEAFL 381
+F +G SEA L
Sbjct: 501 SFARGGLVKESEAIL 515
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 110/280 (39%), Gaps = 36/280 (12%)
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
Q+ C+ + +Y+ IS G++G L+ EM S+G S + A I Y R
Sbjct: 134 QIWCKPNE---HIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGR-- 188
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF------------MLGEF--LRD 244
GR + S L+D+ +S + L +LG F +R
Sbjct: 189 --------NGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRH 240
Query: 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304
G+ + D+ + +N LL + A + F M++ G PDLTT++ F ++
Sbjct: 241 EGI-QPDI--VTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297
Query: 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD-SPVVSTDPY 363
+ L M PD+ +Y +++AY + +M +P +T
Sbjct: 298 LEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSV 357
Query: 364 VFEAFGK-GDFHSSSEAFLEFKRQRK----WTYRKLIAVY 398
+ FG+ G + + FLE K TY LI V+
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVF 397
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 123/308 (39%), Gaps = 26/308 (8%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
K+ R+R C L+ + K + + G P T ++ C G
Sbjct: 217 KMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEG 276
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS--CRNADLLPEV 151
V A+ ++EE+ V + ++D +G++G ++ + +++ C D++
Sbjct: 277 DVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVI--T 334
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ I+CF K G+L + +EM G + + + + + + G + + Y ++
Sbjct: 335 YNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR 394
Query: 212 RSRHLIDKEGIRAVSFTYL----------KERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
R G+ +TY F LG + VG+ + + + L+
Sbjct: 395 RV-------GLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV---EWNVVTYTALI 444
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM-SMFWDLHLSLEHMKHESV 320
+MK + F +M AG P+L ++N F + +M L L L +K +
Sbjct: 445 DGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL-LNELKGRGI 503
Query: 321 GPDLVTYG 328
PDL+ YG
Sbjct: 504 KPDLLLYG 511
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 2/186 (1%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y+ I C K+G +E +EM RG D+ T N+ I + + G L + + +K
Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK 324
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV-GLGRKDLGNLLWNLLLLSYAGNFKM 270
D A+ + K K + EF R++ G G K + ++ L+ ++ M
Sbjct: 325 DMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKP-NVVSYSTLVDAFCKEGMM 383
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330
+ + ++ M G P+ T+ A ++ D M V ++VTY +
Sbjct: 384 QQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 443
Query: 331 VDAYLD 336
+D D
Sbjct: 444 IDGLCD 449
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 12/229 (5%)
Query: 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238
GF V A + I G L E + ++KR R + + K K +
Sbjct: 191 GFGVFDALFSVLI----DLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDV 246
Query: 239 GEFLRD-VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297
F +D +G G + +N+++ +++ + F M G PD T+N
Sbjct: 247 KRFFKDMIGAGARPT-VFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMID 305
Query: 298 AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSP 356
F ++ D E MK PD++TY +++ + +L L+F P
Sbjct: 306 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKP 365
Query: 357 VVSTDPYVFEAFGK-GDFHSSSEAFLEFKR----QRKWTYRKLIAVYLK 400
V + + +AF K G + + +++ +R ++TY LI K
Sbjct: 366 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCK 414
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 128/314 (40%), Gaps = 16/314 (5%)
Query: 25 HPKNGDL--ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
+ K GDL A+ + R V S++ R+ A +L ++ EG+ PD T+
Sbjct: 341 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
A++ C A + E + V E + + + V + LMD Y + G E + ++
Sbjct: 401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460
Query: 143 RNA---DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199
++ + + YS+ +C+ + L L L+E + FS D T + + +
Sbjct: 461 KDIISWNTIIGGYSK--NCYANEA-LSLFNLLLEE---KRFSPDERTVACVLPACASLSA 514
Query: 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNL 259
+ +G + R+ + D+ ++ Y K + D+ KDL + W +
Sbjct: 515 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI--ASKDL--VSWTV 570
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
++ Y + K F +M +AG D +F A S + + M+HE
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630
Query: 320 -VGPDLVTYGCVVD 332
+ P + Y C+VD
Sbjct: 631 KIEPTVEHYACIVD 644
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C LV+ L +K A+++++ + S GL+P+ T ++ Y G + A+ V EE+L
Sbjct: 194 CNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEML 253
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+ + LMD Y ++G F+E +++D + + Y I K+ +
Sbjct: 254 DRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSG 313
Query: 167 LMENTLKEMVSRGFSVDSA 185
N EM+ R F DS+
Sbjct: 314 EARNMFDEMLERSFMPDSS 332
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+ +L Y M+S +R M + G++PD TT+ + + ++ F + ++ M+
Sbjct: 229 YTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDME 288
Query: 317 HESVGPDLVTYGCVVDAYLDKR 338
+ P+ VTYG ++ A ++
Sbjct: 289 KNEIEPNEVTYGVMIRALCKEK 310
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 1/153 (0%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ L ++KK A + + + +PD+S C ++ + V EA +W ++L ++
Sbjct: 302 MIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNN 361
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ +LS L+ + G E + D+ + L Y+ I+ ++G+L
Sbjct: 362 CMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSL-LTYNTLIAGMCEKGELTEAG 420
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+M R ++ T N I S+ G++ E
Sbjct: 421 RLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKE 453
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 118/276 (42%), Gaps = 18/276 (6%)
Query: 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127
+ ++ G+ PD T +L+ + G A+ +++E+ + V + L+DA +
Sbjct: 328 DEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKG 387
Query: 128 GCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185
G + I+ Q+ + ++P V YS I F K G+ + N EM G ++D
Sbjct: 388 GQMDLAFEILAQMPVKR--IMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRV 445
Query: 186 TGNAFIIYYSRFGSLTEM-----ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
+ N + Y++ G E E A +K+ D A+ Y K+ K+ + +
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKK-----DVVTYNALLGGYGKQGKYDEVKK 500
Query: 241 FLRDVGLGRKD-LGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVA 298
+ + R+ L NLL ++ L+ Y+ K F AG D+ ++ A
Sbjct: 501 VFTE--MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDA 558
Query: 299 FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ M E + P++VTY ++DA+
Sbjct: 559 LCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAF 594
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 125/335 (37%), Gaps = 48/335 (14%)
Query: 43 GFVDCASLVEDLGRKKKPHLAHQLVN-TVKSEGLLPDNSTLCALML-CYANNGFVLEAQV 100
G DC ++ +LG + + A VK E + L + M+ G V A+
Sbjct: 195 GSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKR 254
Query: 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISC 158
++E + + +V S L+ AYGR G E IS+ + S + L P + Y+ I
Sbjct: 255 IFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFN--SMKEYGLRPNLVTYNAVIDA 312
Query: 159 FGKQG-QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR--- 214
GK G + + + EM G D T N+ + SR G + + R
Sbjct: 313 CGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQ 372
Query: 215 ------HLID---KEGIRAVSFTYLKERK-----------------FFMLGEF------- 241
L+D K G ++F L + F G F
Sbjct: 373 DVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLF 432
Query: 242 --LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
+R +G+ L + +N LL Y + + M+ G D+ T+N +
Sbjct: 433 GEMRYLGIA---LDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGY 489
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ + ++ MK E V P+L+TY ++D Y
Sbjct: 490 GKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGY 524
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 13/175 (7%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
D+ R++ ++ V +L+ G++ K ++ +K E +LP+ T L+ Y
Sbjct: 465 DILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGY 524
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
+ G EA ++ E S+ V + S L+DA + G +S+ID+++
Sbjct: 525 SKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNV 584
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204
Y+ I FG+ ++ S D + G + S +LTE E
Sbjct: 585 VTYNSIIDAFGRSATMDR-------------SADYSNGGSLPFSSSALSALTETE 626
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 161/373 (43%), Gaps = 30/373 (8%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L +K+ + + + G V ++++ L K + A L + ++G+ P+ T +L+ C
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 302
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
N G +A + +++ +V S L+DA+ + G E + D++ R+ D P+
Sbjct: 303 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PD 360
Query: 151 V--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
+ YS I+ F +L+ ++ + M+S+ + T N I + + + E +
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE-------FLRDVGLG-RKDLGNLLWNLL 260
+ + R L+ V++T L FF E F + V G D+ + +++L
Sbjct: 421 EMSQ-RGLVGN----TVTYTTLIH-GFFQARECDNAQIVFKQMVSDGVLPDI--MTYSIL 472
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF---WDLHLSLEHMKH 317
L N K+++ F + + PD+ T+NI + WDL SL
Sbjct: 473 LDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS---L 529
Query: 318 ESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY---VFEAFGKGDFH 374
+ V P++VTY ++ + K L D +M ++ P+ + Y + GD
Sbjct: 530 KGVKPNVVTYTTMMSGFCRKGLKEEADALFREMK-EEGPLPDSGTYNTLIRAHLRDGDKA 588
Query: 375 SSSEAFLEFKRQR 387
+S+E E + R
Sbjct: 589 ASAELIREMRSCR 601
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 106/274 (38%), Gaps = 35/274 (12%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A ++ +++ S S+ S L+ A ++ F+ +IS+ +Q+ YS I
Sbjct: 64 DAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILI 123
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSAT----------GNAFIIYYSRFGSLTEMETA 206
+CF ++ QL L L +M+ G+ D T GN S G + EM
Sbjct: 124 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQ 183
Query: 207 ---------------YGRLKRSRHLIDK---EGIRAVSFTY-------LKERKFFMLGEF 241
+ R + L+D+ +G + TY K +
Sbjct: 184 PDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSL 243
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
L+ + G+ + G +++N ++ + + F M G P++ T+N
Sbjct: 244 LKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 303
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ D L M + P++VT+ ++DA++
Sbjct: 304 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 337
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 119/295 (40%), Gaps = 20/295 (6%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ L R + A LV+ + +G PD T ++ G + A + +++
Sbjct: 191 TLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQG 250
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V + + ++DA N+ +++ ++ N + P V Y+ I C G+
Sbjct: 251 KIEPGVVIYNTIIDALCNYKNVNDALNLFTEMD--NKGIRPNVVTYNSLIRCLCNYGRWS 308
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL-KRSRHLIDKEGIRAV 225
L +M+ R + + T +A I + + G L E E Y + KRS ID +
Sbjct: 309 DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS---IDPD----- 360
Query: 226 SFTYLKERKFFMLGEFLRDVG------LGRKDLGNLL-WNLLLLSYAGNFKMKSLQREFM 278
FTY F + + L + + + N++ +N L+ + ++ F
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420
Query: 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
MS+ G + T+ F + + + + M + V PD++TY ++D
Sbjct: 421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDG 475
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 4/204 (1%)
Query: 27 KNGDLARKIIRYRKQEGFV----DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82
K D ++ R Q G V +L+ + ++ A + + S+G+LPD T
Sbjct: 410 KRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTY 469
Query: 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142
L+ NNG V A VV+E L S + + +++ + G + + +S
Sbjct: 470 SILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 529
Query: 143 RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ Y+ +S F ++G E + +EM G DS T N I + R G
Sbjct: 530 KGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAA 589
Query: 203 METAYGRLKRSRHLIDKEGIRAVS 226
++ R + D I V+
Sbjct: 590 SAELIREMRSCRFVGDASTIGLVT 613
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 46/285 (16%), Positives = 102/285 (35%), Gaps = 35/285 (12%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ R+ + LA ++ + G PD TL +L+ + + + +A + +++
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+ R +E ++++D++ + Y ++ K+G ++L
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+ LK+M N I + ++ + + + D +GIR TY
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM-------DNKGIRPNVVTY 294
Query: 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289
N L+ + R M E +P++
Sbjct: 295 ----------------------------NSLIRCLCNYGRWSDASRLLSDMIERKINPNV 326
Query: 290 TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
TF+ AF + + + M S+ PD+ TY +++ +
Sbjct: 327 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 371
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 114/271 (42%), Gaps = 16/271 (5%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ P T L+ ++ V A+ +++E+ + L+ Y + G ++
Sbjct: 142 GIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKG 201
Query: 134 ISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ +++ + + +LP +Y+ +S F ++G+ + E +++M G D T N+ I
Sbjct: 202 LELLNAM--ESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRI 259
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGI-RAVSFTYLKERKFFMLGEFLRDVGL--- 247
+ G + + + ++ +L G+ R S TY K F L D
Sbjct: 260 SALCKEGKVLDASRIFSDMELDEYL----GLPRPNSITYNLMLKGFCKVGLLEDAKTLFE 315
Query: 248 ---GRKDLGNLL-WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303
DL +L +N+ L + K + +M++ G P + ++NI ++
Sbjct: 316 SIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLG 375
Query: 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
M D + MK V PD VTYGC++ Y
Sbjct: 376 MLSDAKTIVGLMKRNGVCPDAVTYGCLLHGY 406
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 136/321 (42%), Gaps = 16/321 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +V +K G+ PD T L+ Y + G V A+ + +E++ ++ + + + L+
Sbjct: 380 AKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLH 439
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
+ ++G +E ++ +++ + L + + G+L+ +K M G +
Sbjct: 440 SLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAA 499
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI-RAVSFTYLKERKFFMLGEF 241
GN++I SL E + S L G+ +A F K M+GE
Sbjct: 500 LGNLGNSYIGLVDD--SLIENNCLPDLITYSTLL---NGLCKAGRFAEAKNLFAEMMGEK 554
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
L+ ++ +N+ + + K+ S R M + G H L T+N +
Sbjct: 555 LQP--------DSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGI 606
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD-KRLGRNLDFGLSKMNLDDSPVVST 360
+ +++H ++ MK + + P++ TY + + +++ + M + +P V +
Sbjct: 607 KNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFS 666
Query: 361 DPYVFEAFGK-GDFHSSSEAF 380
Y+ EAF K DF + E F
Sbjct: 667 FKYLIEAFCKVPDFDMAQEVF 687
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 103/252 (40%), Gaps = 8/252 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
++V R+ + + ++V ++ EGL+PD T + + G VL+A ++ ++
Sbjct: 222 TIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELD 281
Query: 109 SFV---LSVQVLSDLM-DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG--KQ 162
++ + +LM + ++G + ++ + + R D L + S I G +
Sbjct: 282 EYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESI--RENDDLASLQSYNIWLQGLVRH 339
Query: 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222
G+ E LK+M +G + N + + G L++ +T G +KR+ D
Sbjct: 340 GKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTY 399
Query: 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282
+ Y K L+++ N+LL S ++ + +M+E
Sbjct: 400 GCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNE 459
Query: 283 AGFHPDLTTFNI 294
G+ D T NI
Sbjct: 460 KGYGLDTVTCNI 471
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 116/295 (39%), Gaps = 12/295 (4%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++V + K A + +++EG D + L+ + G + V L
Sbjct: 186 TTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYR 245
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
+ ++V V + L+D Y ++G I + +V R + IS F + G
Sbjct: 246 TGLPMNVVVETSLVDMYAKVG----FIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANK 301
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
+ EM S GF D T ++ S+ GSL + + + RH++D+ A+
Sbjct: 302 AFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILK-RHVLDRVTATALMD 360
Query: 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
Y K E VG RKDL + WN ++ Y + + + F++M+E+ P
Sbjct: 361 MYSKCGALSSSREIFEHVG--RKDL--VCWNTMISCYGIHGNGQEVVSLFLKMTESNIEP 416
Query: 288 DLTTFNIRAVAFSRMSMF-WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341
D TF A S + H + + P Y C++D L R GR
Sbjct: 417 DHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYVCLID--LLARAGR 469
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 107/281 (38%), Gaps = 28/281 (9%)
Query: 32 ARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN 91
ARK+ Q G S++ R K P +L + + +E + PD+ST + +
Sbjct: 69 ARKVFDELPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTF-TMTIKACL 127
Query: 92 NGFVLE-AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
+G VLE + VW + + + V V S +++ Y + G +E + +++ R+
Sbjct: 128 SGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVI---- 183
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
++ ++ F + G+ +EM + GF D + G + +G L
Sbjct: 184 CWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYL 243
Query: 211 KRS---------RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLL 261
R+ L+D V F + R F + F V W L+
Sbjct: 244 YRTGLPMNVVVETSLVDMYA--KVGFIEVASRVFSRM-MFKTAVS----------WGSLI 290
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302
+A N + M GF PDL T VA S++
Sbjct: 291 SGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQV 331
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEE 104
V SL+ + + A + V ++S G PD TL +++ + G + ++V
Sbjct: 284 VSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCY 343
Query: 105 LLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164
+L VL + LMD Y + G + I + V DL+ ++ ISC+G G
Sbjct: 344 IL-KRHVLDRVTATALMDMYSKCGALSSSREIFEHVG--RKDLV--CWNTMISCYGIHGN 398
Query: 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
+ + + +M D AT F SL + G +++ +H
Sbjct: 399 GQEVVSLFLKMTESNIEPDHAT----------FASLLSALSHSGLVEQGQH 439
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 131/316 (41%), Gaps = 16/316 (5%)
Query: 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89
+L K+ + + + G + ++++ L + K A L ++++G+ P+ T +L+ C
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149
N G +A + +++ V S L+DA+ + G E + D++ R+ D
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361
Query: 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209
YS I+ F +L+ + + MVS+ D T N I + ++ + E +
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421
Query: 210 LKRSRHLIDKEGIRAVSFTYLKERKFF-----MLGEFLRDVGLGRKDLGNLLWNLLLLSY 264
+ + R L+ V++ L + F M E +++ + +N LL
Sbjct: 422 MSQ-RGLVGN----TVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Query: 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF---WDLHLSLEHMKHESVG 321
N K++ F + + P + T+NI + WDL +L + V
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS---LKGVK 533
Query: 322 PDLVTYGCVVDAYLDK 337
PD+V Y ++ + K
Sbjct: 534 PDVVAYNTMISGFCRK 549
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/274 (18%), Positives = 103/274 (37%), Gaps = 35/274 (12%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A ++ E++ S S+ S L+ A ++ F+ +IS+ +Q+ YS I
Sbjct: 64 DAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILI 123
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR-------------------- 196
+CF ++ QL L L +M+ G+ + T ++ + Y
Sbjct: 124 NCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQ 183
Query: 197 -----FGSLTEMETAYGRLKRSRHLIDK---EGIRAVSFTY-------LKERKFFMLGEF 241
F +L + + + LID+ +G + TY K +
Sbjct: 184 PNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNL 243
Query: 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301
L + G+ + G L++N ++ M F M G P++ T++
Sbjct: 244 LNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCN 303
Query: 302 MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ D L M + PD+ T+ ++DA++
Sbjct: 304 YGRWSDASRLLSDMIERKINPDVFTFSALIDAFV 337
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 137/343 (39%), Gaps = 61/343 (17%)
Query: 45 VDCASLVEDL---GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVV 101
V CA L+ L GR K ++ + +G+ L+ + + G EA V+
Sbjct: 309 VTCAILITTLRKAGRSAKE--VWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVI 366
Query: 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCF 159
E+ + V + LMDAY + E+ + ++ R+ L P Y+ + +
Sbjct: 367 QTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEM--RDKGLKPSAATYNILMDAY 424
Query: 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET-AYGRLKR-----S 213
++ Q +++E L+EM G + + I Y R +++M A+ R+K+ S
Sbjct: 425 ARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPS 484
Query: 214 RH----LID-------------------KEGIRAVSFTYLKERKFFMLGEFLR--DVG-- 246
H LI KEGI+ TY +L F R D G
Sbjct: 485 SHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTS-----VLDAFRRSGDTGKL 539
Query: 247 -------LGRKDLGN-LLWNLLLLSYAGN---FKMKSLQREFMRMSEAGFHPDLTTFNIR 295
L K G + +N LL +A + + + EF +M G P + T+N+
Sbjct: 540 MEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKM---GLQPSVMTYNML 596
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
A++R L L+ M ++ PD +TY ++ A++ R
Sbjct: 597 MNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVR 639
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 108/287 (37%), Gaps = 19/287 (6%)
Query: 66 LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125
L ++ +GL P +T LM YA + + E+ +V+ + L+ AYG
Sbjct: 401 LFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYG 460
Query: 126 RIGCFNEIISIIDQ-VSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
R +++ + D + + L P Y+ I + G E + +EM G
Sbjct: 461 RTKKMSDMAA--DAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKP 518
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-LKERKFFMLGEF 241
T + + + R G G+L L+ +E I+ TY F G +
Sbjct: 519 SVETYTSVLDAFRRSGDT-------GKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLY 571
Query: 242 L--RDVGLGRKDLG----NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
+ RDV +G + +N+L+ +YA + L + M+ PD T++
Sbjct: 572 IEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTM 631
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342
AF R+ F + M PD +Y + DK +N
Sbjct: 632 IYAFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKN 678
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/369 (21%), Positives = 156/369 (42%), Gaps = 28/369 (7%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L +K+ + + + V ++++ L + K A L + ++G+ PD T +L+ C
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLC 304
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
N G +A + +++ +V S L+DA+ + G E + D++ R+ D P+
Sbjct: 305 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PD 362
Query: 151 V--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
+ YS I+ F +L+ ++ + M+S+ + T + I + + + E +
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFR 422
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE-------FLRDVGLGRKDLGNLLWNLLL 261
+ + R L+ V++T L FF + F + V +G L +N+LL
Sbjct: 423 EMSQ-RGLVGN----TVTYTTLI-HGFFQARDCDNAQMVFKQMVSVGVHP-NILTYNILL 475
Query: 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF---WDLHLSLEHMKHE 318
N K+ F + + PD+ T+NI + W+L +L +
Sbjct: 476 DGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLS---LK 532
Query: 319 SVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY---VFEAFGKGDFHS 375
V P+++ Y ++ + K D L KM +D P+ ++ Y + GD +
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMK-EDGPLPNSGTYNTLIRARLRDGDREA 591
Query: 376 SSEAFLEFK 384
S+E E +
Sbjct: 592 SAELIKEMR 600
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/292 (17%), Positives = 109/292 (37%), Gaps = 43/292 (14%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
F++C R+ + LA ++ + G PD TL +L+ Y ++ + +A + +
Sbjct: 124 FINC------FCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVD 177
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163
+++ + + L+ +E ++++DQ+ R Y ++ K+G
Sbjct: 178 QMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRG 237
Query: 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
++L + LK+M D N I ++ + + + + D +GIR
Sbjct: 238 DIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM-------DNKGIR 290
Query: 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF-KMKSLQREFMRMSE 282
FTY L+S N+ + R M E
Sbjct: 291 PDVFTYSS-----------------------------LISCLCNYGRWSDASRLLSDMIE 321
Query: 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+P++ TF+ AF + + + M S+ PD+ TY +++ +
Sbjct: 322 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 373
Score = 38.9 bits (89), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 50/276 (18%), Positives = 105/276 (38%), Gaps = 35/276 (12%)
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154
V +A ++ +++ S S+ + L+ A ++ F +IS+ +Q+ YS
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE--------META 206
I+CF ++ QL L L +M+ G+ D T ++ + Y +++ +E
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 207 Y-----------------GRLKRSRHLID---KEGIRAVSFTY-------LKERKFFMLG 239
Y + + L+D + G + TY K +
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243
Query: 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299
L+ + G+ + +++N ++ M F M G PD+ T++
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303
Query: 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335
+ D L M + P++VT+ ++DA++
Sbjct: 304 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 339
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/353 (19%), Positives = 137/353 (38%), Gaps = 49/353 (13%)
Query: 30 DLARKIIRYRKQEGFV-DCA---SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85
D A +++ + G + DC S++ +P A + ++S+G+ PD T L
Sbjct: 248 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLL 307
Query: 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145
M NG +EA+ +++ + + L+ Y G E+ ++D + RN
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD-LMVRNG 366
Query: 146 DLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI------------ 191
+ P+ V+S I + KQG+++ +M +G + ++ T A I
Sbjct: 367 -IHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425
Query: 192 -IYYSR------------FGSLTEMETAYGRLKRSRHLIDKEGIRAVSF----------T 228
+Y+ + + SL + +R+ LI + R + +
Sbjct: 426 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 485
Query: 229 YLKERKFF---MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
+ KE + L E + +G+ + +N L+ Y KM + M G
Sbjct: 486 HCKEGRVIESEKLFELMVRIGVKPN---VITYNTLINGYCLAGKMDEAMKLLSGMVSVGL 542
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
P+ T++ + ++S D + + M+ V PD++TY ++ R
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR 595
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 121/298 (40%), Gaps = 24/298 (8%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ L + + A +++NT+ G++PD T +++ Y ++G EA +++ S
Sbjct: 236 SIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD 295
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V S LMD + G E I D ++ R L PE+ Y + + +G L
Sbjct: 296 GVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG--LKPEITTYGTLLQGYATKGALV 353
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
M L MV G D + I Y++ G + + + +++ ++G+ +
Sbjct: 354 EMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMR-------QQGLNPNA 406
Query: 227 FTY----------LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276
TY + + E + D GL GN+++N L+ K + +
Sbjct: 407 VTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP---GNIVYNSLIHGLCTCNKWERAEEL 463
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+ M + G + FN + + + E M V P+++TY +++ Y
Sbjct: 464 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGY 521
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 79/188 (42%), Gaps = 2/188 (1%)
Query: 149 PEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P+V Y+ I+ F K+G + +T EM+ RG D T N+ I + ++ +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
+ ++ + D ++ Y + FL+ + + + ++LL+
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
N + ++ F M++ G P++TT+ ++ ++H L+ M + PD
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373
Query: 327 YGCVVDAY 334
+ ++ AY
Sbjct: 374 FSILICAY 381
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 126/333 (37%), Gaps = 55/333 (16%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S++ G+ K A L+ + G+LP+ + L+ Y N LEA V+ E+
Sbjct: 265 SMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV 324
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV----------------- 151
+ L + + ++D YG++ E + S R D+ P V
Sbjct: 325 NCALDLTTCNIMIDVYGQLDMVKEADRLF--WSLRKMDIEPNVVSYNTILRVYGEAELFG 382
Query: 152 --------------------YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
Y+ I +GK + E N ++EM SRG ++ T + I
Sbjct: 383 EAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTII 442
Query: 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM------LGEFLRDV 245
+ + G L T + +L+ S ID+ + + Y ER M L E
Sbjct: 443 SIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAY--ERVGLMGHAKRLLHELKLPD 500
Query: 246 GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF 305
+ R+ + +L+ AG + + F + E+G D++ F +SR +
Sbjct: 501 NIPRETA------ITILAKAG--RTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRY 552
Query: 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
++ E M+ PD V++AY +R
Sbjct: 553 VNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQR 585
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 2/199 (1%)
Query: 143 RNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
R L P+ YS I+ FGK+G + + L++M S D + I R
Sbjct: 182 RQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDY 241
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
++ + + RLKRS D ++ Y K + F ++++ + ++ L
Sbjct: 242 SKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTL 301
Query: 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
L Y N K F M E DLTT NI + ++ M + ++ +
Sbjct: 302 LSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDI 361
Query: 321 GPDLVTYGCVVDAYLDKRL 339
P++V+Y ++ Y + L
Sbjct: 362 EPNVVSYNTILRVYGEAEL 380
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/288 (18%), Positives = 113/288 (39%), Gaps = 17/288 (5%)
Query: 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106
C +++ G+ A +L +++ + P+ + ++ Y EA ++ +
Sbjct: 333 CNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQ 392
Query: 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166
+V + ++ YG+ + +++ ++ R + YS IS +GK G+L+
Sbjct: 393 RKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLD 452
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+++ S G +D I+ Y R G + + LK ++ + I ++
Sbjct: 453 RAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILA 512
Query: 227 FTYLKE------RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280
E R+ F GE KD+ ++ ++ Y+ N + ++ F +M
Sbjct: 513 KAGRTEEATWVFRQAFESGEV--------KDIS--VFGCMINLYSRNQRYVNVIEVFEKM 562
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES-VGPDLVTY 327
AG+ PD + A+ + F M+ E V PD V +
Sbjct: 563 RTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHF 610
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135
LPDN + A G EA V+ + S V + V +++ Y R + +I
Sbjct: 498 LPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIE 557
Query: 136 IIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193
+ +++ R A P+ V + ++ +GKQ + E + +EM G +
Sbjct: 558 VFEKM--RTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSL 615
Query: 194 YSRFGSLTEMETAYGRLKRSRHLIDKE 220
YS +E+ + RL+ ++ KE
Sbjct: 616 YSSKKDFEMVESLFQRLESDPNVNSKE 642
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 49/289 (16%), Positives = 114/289 (39%), Gaps = 43/289 (14%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
++ ++ R K+ +AH L + ++ L PD T L+ + G + ++ + W + +
Sbjct: 161 VLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEG-MFDSALSWLQKMEQD 219
Query: 110 FVLSVQVL-SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLE 166
V VL S+L++ R+ +++ ISI ++ + + + P++ Y+ I+ +GK
Sbjct: 220 RVSGDLVLYSNLIELSRRLCDYSKAISIFSRL--KRSGITPDLVAYNSMINVYGKAKLFR 277
Query: 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS 226
+KEM G ++ + + + Y E + + +K +D
Sbjct: 278 EARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTC---- 333
Query: 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
N+++ Y +K R F + +
Sbjct: 334 -------------------------------NIMIDVYGQLDMVKEADRLFWSLRKMDIE 362
Query: 287 PDLTTFNIRAVAFSRMSMFWD-LHLSLEHMKHESVGPDLVTYGCVVDAY 334
P++ ++N + +F + +HL M+ + + ++VTY ++ Y
Sbjct: 363 PNVVSYNTILRVYGEAELFGEAIHL-FRLMQRKDIEQNVVTYNTMIKIY 410
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 105/251 (41%), Gaps = 45/251 (17%)
Query: 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154
VL+ Q ++++ S FV+ + +L YG G + D++ N + + ++
Sbjct: 109 VLQYQKKFDDIKSEDFVIRIMLL------YGYSGMAEHAHKLFDEMPELNCERTVKSFNA 162
Query: 155 AISCFGKQGQLELMENTLKEMVSR-GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
+S + +L+ T KE+ + G + D T N I R GS+ ++ + + L+++
Sbjct: 163 LLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKN 222
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273
D +SF L E +F+ F+ G+ +W+L
Sbjct: 223 GFEPD-----LISFNTLLE-EFYRRELFVE---------GDRIWDL-------------- 253
Query: 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
M P++ ++N R +R F D ++ MK E + PD+ TY ++ A
Sbjct: 254 ------MKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITA 307
Query: 334 YLDKRLGRNLD 344
Y R+ NL+
Sbjct: 308 Y---RVDNNLE 315
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 4/140 (2%)
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133
G+ PD T ++ G + + ++EEL + F + + L++ + R F E
Sbjct: 188 GITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEG 247
Query: 134 ISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
I D + +N L P + Y+ + + + N + M + G S D T NA I
Sbjct: 248 DRIWDLMKSKN--LSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALI 305
Query: 192 IYYSRFGSLTEMETAYGRLK 211
Y +L E+ Y +K
Sbjct: 306 TAYRVDNNLEEVMKCYNEMK 325
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 117/303 (38%), Gaps = 39/303 (12%)
Query: 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144
LM + G + +AQ V++E+ S +V + L++ Y ++G +E + Q+
Sbjct: 246 LMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQM--EK 303
Query: 145 ADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
+ P+V YS I+ K+ +++ EM RG + I +SR G +
Sbjct: 304 SRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDL 363
Query: 203 METAY-------------------------GRLKRSRHLID---KEGIRAVSFTYLKERK 234
M+ +Y G L +R+++D + G+R TY
Sbjct: 364 MKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLID 423
Query: 235 FFMLG-------EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287
F G E +++ +L + ++ L+ ++ +R M AG P
Sbjct: 424 GFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKP 483
Query: 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGL 347
D T+ + AF + L+ M+ + P +VTY +++ +N D L
Sbjct: 484 DDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLL 543
Query: 348 SKM 350
M
Sbjct: 544 DAM 546
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 123/306 (40%), Gaps = 39/306 (12%)
Query: 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90
L ++ + R + ++L+ L ++ K AH L + + GL+P++ L+ ++
Sbjct: 297 LKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHS 356
Query: 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE 150
NG + + ++++LS + + + L++ + + G +I+D + R L P+
Sbjct: 357 RNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG--LRPD 414
Query: 151 --VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208
Y+ I F + G +E KEM G +D +A + + G + + E A
Sbjct: 415 KITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALR 474
Query: 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268
+ R+ GI+ TY M+ F + G G F
Sbjct: 475 EMLRA-------GIKPDDVTYT-----MMMDAFCKK---GDAQTG--------------F 505
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
K+ M G P + T+N+ ++ + + L+ M + V PD +TY
Sbjct: 506 KL------LKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYN 559
Query: 329 CVVDAY 334
+++ +
Sbjct: 560 TLLEGH 565
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 122/297 (41%), Gaps = 5/297 (1%)
Query: 41 QEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC-ALMLCYANNGFVLEAQ 99
E F + SL+E + +K + A + ++ + P L ALM+ Y + GF+ +A
Sbjct: 131 HEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVTPMCGFLVDALMITYTDLGFIPDAI 190
Query: 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159
+ F + ++ +L+D ++ I ++ L V++ ++ F
Sbjct: 191 QCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKF 250
Query: 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219
K+G + + E+ R + N I Y + G+L E ++++SR D
Sbjct: 251 CKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDV 310
Query: 220 EGIRAVSFTYLKERKFFMLGEF-LRDVGLGRKDLGN-LLWNLLLLSYAGNFKMKSLQREF 277
A+ KE K M G L D R + N +++ L+ ++ N ++ ++ +
Sbjct: 311 FTYSALINALCKENK--MDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESY 368
Query: 278 MRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
+M G PD+ +N F + ++ M + PD +TY ++D +
Sbjct: 369 QKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGF 425
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 79/375 (21%), Positives = 142/375 (37%), Gaps = 34/375 (9%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
S++ L R K A + + + +G+LPD L+ + G + A + E+ S
Sbjct: 320 GSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS 379
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL 167
V + ++ + +IG E + ++ C+ + ++ I+ + K G ++
Sbjct: 380 RDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKD 439
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227
M+ G S + T I + G L ++A L H + K G++ F
Sbjct: 440 AFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL---DSANELL----HEMWKIGLQPNIF 492
Query: 228 TYLK-----------ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276
TY E ++GEF GL + + + L+ +Y + +M Q
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEF-EAAGL---NADTVTYTTLMDAYCKSGEMDKAQEI 548
Query: 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
M G P + TFN+ F M D L M + + P+ T+ +V Y
Sbjct: 549 LKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC- 607
Query: 337 KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSS--EAFLEFKRQRK------ 388
+ NL + S V D +E KG + + EA+ F+ +
Sbjct: 608 --IRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 665
Query: 389 -WTYRKLIAVYLKKQ 402
TY LI +LK++
Sbjct: 666 VSTYSVLIKGFLKRK 680
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/282 (17%), Positives = 108/282 (38%), Gaps = 24/282 (8%)
Query: 55 GRKKKPHL--AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVL 112
G K H+ A ++ N + G P+ T L+ G + A + E+
Sbjct: 430 GYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQP 489
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
++ + +++ + G E + ++ + + Y+ + + K G+++ + L
Sbjct: 490 NIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEIL 549
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
KEM+ +G T N + + G L + E + + + +GI + T+
Sbjct: 550 KEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE-------KLLNWMLAKGIAPNATTFNSL 602
Query: 233 RKFFMLGEFLRDVGLGRKDL--------GNLLWNLLLLSYAGNFKMKSLQRE---FMRMS 281
K + + L+ KD+ G NL+ G+ K ++++ F M
Sbjct: 603 VKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLV----KGHCKARNMKEAWFLFQEMK 658
Query: 282 EAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD 323
GF ++T+++ F + F + + M+ E + D
Sbjct: 659 GKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/260 (18%), Positives = 102/260 (39%), Gaps = 35/260 (13%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII------DQVSCRNAD 146
G + EA+ V+E++L+ VLSV + + + C+ +II + C N
Sbjct: 189 GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSK-DCYKTATAIIVFREFPEVGVCWNV- 246
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
Y+ I + G+++ + L M +G++ D + + + Y RFG L ++
Sbjct: 247 ---ASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKL 303
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG------------N 254
+KR +G++ S+ Y ++G R L +
Sbjct: 304 IEVMKR-------KGLKPNSYIYGS-----IIGLLCRICKLAEAEEAFSEMIRQGILPDT 351
Query: 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+++ L+ + +++ + F M PD+ T+ F ++ +
Sbjct: 352 VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 411
Query: 315 MKHESVGPDLVTYGCVVDAY 334
M + + PD VT+ +++ Y
Sbjct: 412 MFCKGLEPDSVTFTELINGY 431
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 78/212 (36%), Gaps = 45/212 (21%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
S+V L + A +LV ++ GL D T LM Y +G + +AQ + +E+L
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 555
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNE-------------------IISIIDQVSCRN----- 144
++ + LM+ + G + S++ Q RN
Sbjct: 556 GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 615
Query: 145 ADLLPEVYSRAISCFGKQGQLELMENTLK----------------EMVSRGFSVDSATGN 188
+ ++ SR + GK EN +K EM +GFSV +T +
Sbjct: 616 TAIYKDMCSRGVGPDGKT-----YENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYS 670
Query: 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220
I + + E + +++R DKE
Sbjct: 671 VLIKGFLKRKKFLEAREVFDQMRREGLAADKE 702
>sp|Q9LPC4|PPR1_ARATH Pentatricopeptide repeat-containing protein At1g01970
OS=Arabidopsis thaliana GN=At1g01970 PE=2 SV=1
Length = 409
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 1/195 (0%)
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
Y++ I +GK Q+E E TL M +RGF +D T A + YS+ G E + +K
Sbjct: 168 YTKIIHYYGKLNQVEDAERTLLSMKNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEIK 227
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
+D ++ Y++ LR++ G ++ LL Y+ +
Sbjct: 228 LLGEPLDYRSYGSMIMAYIRAGVPEKGESLLREMDSQEICAGREVYKALLRDYSMGGDAE 287
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+R F + AG PD+ + A+S + L+ E+M+ + V+
Sbjct: 288 GAKRVFDAVQIAGITPDVKLCGLLINAYSVSGQSQNARLAFENMRKAGIKATDKCVALVL 347
Query: 332 DAY-LDKRLGRNLDF 345
AY +++L L F
Sbjct: 348 AAYEKEEKLNEALGF 362
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 105/249 (42%), Gaps = 6/249 (2%)
Query: 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147
C+A N V A +++++ + + +V + L+D Y ++ ++ ++ ++ + +
Sbjct: 216 CFAGNIDV--ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEP 273
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
Y+ I+ ++G+++ + L EM RG+S+D T N I Y + G+ + +
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333
Query: 208 GRLKRSRHLIDKEGIRAVSFTY--LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265
+ RH + I S + K EFL + + + L+ ++
Sbjct: 334 AEML--RHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFS 391
Query: 266 GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV 325
M R M++ GF P + T+N D LE MK + + PD+V
Sbjct: 392 QKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVV 451
Query: 326 TYGCVVDAY 334
+Y V+ +
Sbjct: 452 SYSTVLSGF 460
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/301 (18%), Positives = 124/301 (41%), Gaps = 39/301 (12%)
Query: 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93
+++R+ + SL+ + + + A + ++ ++ GL P+ T L+ ++ G
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394
Query: 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV-- 151
++ EA V E+ + F SV + L++ + G + I++++ + + L P+V
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDM--KEKGLSPDVVS 452
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211
YS +S F + ++ +EMV +G D+ T ++ I + +
Sbjct: 453 YSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI-------------QGFCEQR 499
Query: 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271
R++ D + E LR VGL + + L+ +Y ++
Sbjct: 500 RTKEACD------------------LYEEMLR-VGLPPDEFT---YTALINAYCMEGDLE 537
Query: 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
+ M E G PD+ T+++ ++ S + L + +E P VTY ++
Sbjct: 538 KALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLI 597
Query: 332 D 332
+
Sbjct: 598 E 598
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 95/260 (36%), Gaps = 41/260 (15%)
Query: 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137
D T L+ Y G +A V+ E+L SV + L+ + + G N + +
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFL 368
Query: 138 DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197
DQ+ R Y+ + F ++G + L+EM GFS T NA I +
Sbjct: 369 DQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVT 428
Query: 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW 257
G +ME A L E +++ GL + +
Sbjct: 429 G---KMEDAIAVL-----------------------------EDMKEKGLSPDVVS---Y 453
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS---RMSMFWDLHLSLEH 314
+ +L + ++ + R M E G PD T++ F R DL+ E
Sbjct: 454 STVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLY---EE 510
Query: 315 MKHESVGPDLVTYGCVVDAY 334
M + PD TY +++AY
Sbjct: 511 MLRVGLPPDEFTYTALINAY 530
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103
F SL++ K A Q+ ++ + PD + ++ + G + +A +++
Sbjct: 605 FKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYK 664
Query: 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV--SC-----RNADLLPEVYSRAI 156
E++ S F+L + L+ A + G NE+ S+I V SC A +L E+ R
Sbjct: 665 EMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHR-- 722
Query: 157 SCFGKQGQLELMENTLKEMVSRGF 180
+G ++++ + L EM GF
Sbjct: 723 -----EGNMDVVLDVLAEMAKDGF 741
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 257 WNLLL--LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314
+N+L+ +AGN + F +M G P++ T+N + ++ D L
Sbjct: 208 YNILIRGFCFAGNIDVALTL--FDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRS 265
Query: 315 MKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMN-----LDDSPVVSTDPYVFEAFG 369
M + + P+L++Y V++ + + + F L++MN LD+ V+ + +
Sbjct: 266 MALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE---VTYNTLIKGYCK 322
Query: 370 KGDFHSS 376
+G+FH +
Sbjct: 323 EGNFHQA 329
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 115/295 (38%), Gaps = 3/295 (1%)
Query: 53 DLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVL 112
DL R K A ++ +K G+LP+ T A++ Y G V +A +++E+L + +
Sbjct: 243 DLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLP 302
Query: 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172
+V V L+D + + S+ + D VY+ I K G + L
Sbjct: 303 NVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLL 362
Query: 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232
EM S S D T I + E + ++K R ++ Y KE
Sbjct: 363 SEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKE 422
Query: 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292
+ ++ + + ++ L+ Y +K+ + M+ G PD+ T+
Sbjct: 423 YNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTY 482
Query: 293 NIRAVA-FSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL-DKRLGRNLDF 345
A F +M L L M + P+ T+ C+VD + + RL +DF
Sbjct: 483 TALIDAHFKEANMKEALRL-YSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDF 536
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 119/289 (41%), Gaps = 38/289 (13%)
Query: 65 QLVNTVKSEGLLPDNS--TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
+L++ + S G+ P+ T+ L LC N + EA+ ++E + + ++ S ++D
Sbjct: 220 KLLDEMTSLGIKPNVYIYTIYILDLCRDNK--MEEAEKMFELMKKHGVLPNLYTYSAMID 277
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF 180
Y + G + + ++ A+LLP V+ + F K +L + MV G
Sbjct: 278 GYCKTGNVRQAYGLYKEILV--AELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGV 335
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-------LKER 233
+ N I + + G++ E A G L L + FTY E
Sbjct: 336 DPNLYVYNCLIHGHCKSGNMLE---AVGLLSEMESL----NLSPDVFTYTILINGLCIED 388
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF- 292
+ + + R + +N L+ Y + M+ M+ +G P++ TF
Sbjct: 389 QVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFS 448
Query: 293 -------NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
N+R + + M +++++ + + + PD+VTY ++DA+
Sbjct: 449 TLIDGYCNVRDIK-AAMGLYFEMTI-------KGIVPDVVTYTALIDAH 489
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 113/289 (39%), Gaps = 35/289 (12%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L+ KKK A ++ + GL PDN T L+ N V EA W++ +
Sbjct: 558 TLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRN 617
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168
+ V S ++D + E D++ +N VY+ I + + G+L +
Sbjct: 618 GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMA 677
Query: 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228
++M +G S +SAT + I S + E + + ++ EG+ F
Sbjct: 678 LELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRM-------EGLEPNVFH 730
Query: 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288
Y L D G G+ LG ++ K++ L RE M HP+
Sbjct: 731 YTA----------LID-GYGK--LGQMV------------KVECLLRE---MHSKNVHPN 762
Query: 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
T+ + ++R + L M+ + + PD +TY + YL +
Sbjct: 763 KITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQ 811
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 73/153 (47%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ R + +A +L +K +G+ P+++T +L+ + V EA++++EE+
Sbjct: 664 LIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEG 723
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+V + L+D YG++G ++ ++ ++ +N Y+ I + + G +
Sbjct: 724 LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 783
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202
L EM +G DS T FI Y + G + E
Sbjct: 784 RLLNEMREKGIVPDSITYKEFIYGYLKQGGVLE 816
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A V +E+ F +V V ++L+D++ G N+ I I D + + L Y+ I
Sbjct: 361 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 420
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191
+ K GQ + E LKEM+S GF+V+ + + I
Sbjct: 421 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 455
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 106/280 (37%), Gaps = 53/280 (18%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + + S+GL +ST L+ Y NG A+ + +E+LS F ++ + ++
Sbjct: 397 AIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVIC 456
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
F+ + + ++ RN + + IS K G+ + +++GF V
Sbjct: 457 LLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVV 516
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ T NA + G L E +F KE +LG
Sbjct: 517 DTRTSNALLHGLCEAGKLDE-----------------------AFRIQKE----ILG--- 546
Query: 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM---RMSEAGFHPDLTTFNIRAVAF 299
R + R + +N L+ G K L FM M + G PD T++I
Sbjct: 547 RGCVMDR-----VSYNTLISGCCGK---KKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 598
Query: 300 SRMS------MFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
M+ FWD K + PD+ TY ++D
Sbjct: 599 FNMNKVEEAIQFWD------DCKRNGMLPDVYTYSVMIDG 632
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315
L+ + ++ K++ + F +M EAG P++ TFN + + + E M
Sbjct: 275 LFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKM 334
Query: 316 KHESVGPDLVTYGCVVDAYL-DKRLG 340
+ P L+TY +V KR+G
Sbjct: 335 VERGMEPTLITYSILVKGLTRAKRIG 360
>sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710
OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1
Length = 991
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
+++ G+ K A L +K++G PD T +L A V EAQ + E+L S
Sbjct: 521 MIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSG 580
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + ++ +Y R+G ++ + + + + VY I+ F + G +E
Sbjct: 581 CKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAI 640
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
+ M G + + I YS+ G L E Y ++K S
Sbjct: 641 QYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDS 684
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 111/266 (41%), Gaps = 16/266 (6%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD + +++ A+ G V EA+ ++ L V + +M Y +G +E I +
Sbjct: 688 PDVAASNSMLSLCADLGIVSEAESIFNALREKG-TCDVISFATMMYLYKGMGMLDEAIEV 746
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEM-VSRGFSVDSATGNAFIIY 193
+++ R + LL + +++ ++C+ GQL EM V R +D T
Sbjct: 747 AEEM--RESGLLSDCTSFNQVMACYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTL 804
Query: 194 YSRFG----SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
+ G ++++++TAY K + I A F+ + + + E +++ G
Sbjct: 805 LKKGGVPSEAVSQLQTAYNEAKP----LATPAITATLFSAMGLYAYAL--ESCQELTSGE 858
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ +N ++ +Y+ + + + +MRM E G PD+ T + + M +
Sbjct: 859 IPREHFAYNAVIYTYSASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVK 918
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAYL 335
+ + P + V DAY+
Sbjct: 919 RVHSRLTFGELEPSQSLFKAVRDAYV 944
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%)
Query: 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179
L+D YG+ G N+ ++ ++ + ++ I G G L E+ LK+M +G
Sbjct: 311 LIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKG 370
Query: 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
S D+ T N + ++ G + Y ++++ D RAV
Sbjct: 371 ISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAV 416
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 50/267 (18%), Positives = 94/267 (35%), Gaps = 41/267 (15%)
Query: 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207
L ++ I +GK G+L N EM+ G +D+ T N I G L+E E+
Sbjct: 304 LTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLL 363
Query: 208 GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267
++ +++GI + TY N+LL +A
Sbjct: 364 KKM-------EEKGISPDTKTY----------------------------NILLSLHADA 388
Query: 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY 327
+++ + ++ + G PD T + M ++ + M S+ D +
Sbjct: 389 GDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSV 448
Query: 328 GCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKR-- 385
++ Y+++ L + LD +T V + + + +E KR
Sbjct: 449 PVIMQMYVNEGLVVQAKALFERFQLDCVLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNM 508
Query: 386 --QRK--WTYRKLIAVYLKKQLRRNQI 408
QR Y +I Y K +L +
Sbjct: 509 SGQRNDVLEYNVMIKAYGKAKLHEKAL 535
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 45/254 (17%), Positives = 96/254 (37%), Gaps = 10/254 (3%)
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
ST L+ Y G + +A ++ E+L S + + ++ G G +E S++
Sbjct: 305 TSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLK 364
Query: 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
++ + + Y+ +S G +E +++ G D+ T A + +
Sbjct: 365 KMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRK 424
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
+ E+E + R+ ID+ + + Y+ E R L +L +
Sbjct: 425 MVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFE-----RFQLDCVLSS 479
Query: 259 LLLLSYAGNFKMKSLQRE-----FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
L + + K L E + + + +G D+ +N+ A+ + + +
Sbjct: 480 TTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFK 539
Query: 314 HMKHESVGPDLVTY 327
MK++ PD TY
Sbjct: 540 GMKNQGTWPDECTY 553
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 60/314 (19%), Positives = 122/314 (38%), Gaps = 18/314 (5%)
Query: 25 HPKNGDLARKIIRYRKQEG---FVDCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLPD 78
H GD+ + YRK F D + ++ L ++K ++ + + D
Sbjct: 385 HADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRID 444
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII- 137
++ +M Y N G V++A+ ++E VLS L+ ++D Y G + E ++
Sbjct: 445 EHSVPVIMQMYVNEGLVVQAKALFERF-QLDCVLSSTTLAAVIDVYAEKGLWVEAETVFY 503
Query: 138 --DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195
+S + D+L Y+ I +GK E + K M ++G D T N+ +
Sbjct: 504 GKRNMSGQRNDVLE--YNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLA 561
Query: 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE---RKFFMLGEFLRDVGLGRKDL 252
+ E + + S + A+ +Y++ L E + G+ ++
Sbjct: 562 GVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEV 621
Query: 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312
++ L+ +A + ++ + F M E G + A+S++ +
Sbjct: 622 ---VYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVY 678
Query: 313 EHMKHESVGPDLVT 326
+ MK GPD+
Sbjct: 679 DKMKDSEGGPDVAA 692
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340
S + P++ +NI A R + +L L M H V P TYG +VD Y L
Sbjct: 137 SHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLV 196
Query: 341 RNLDFGL----SKMNLDDSPVVSTDPYVFEAFGKGD 372
+ + +M+ D ++T VF+ G+ D
Sbjct: 197 KEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGEFD 232
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 118/292 (40%), Gaps = 14/292 (4%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ GRK + ++ ++ G +P+ + L+ C +LEAQ+V ++
Sbjct: 465 LIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRG 524
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V++ + L+D G + ++ + +L Y+ I G+L E
Sbjct: 525 VSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAE 584
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+ L E+ +G D T N+ I Y G++ Y +KRS GI+ TY
Sbjct: 585 DLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRS-------GIKPTLKTY 637
Query: 230 -----LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284
L ++ L E L + DL L++N +L YA + M+ +M E
Sbjct: 638 HLLISLCTKEGIELTERLFGEMSLKPDL--LVYNGVLHCYAVHGDMEKAFNLQKQMIEKS 695
Query: 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336
D TT+N + ++ ++ ++ M + P+ TY +V + +
Sbjct: 696 IGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCE 747
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 109/257 (42%), Gaps = 21/257 (8%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+A+ +++E+L+ + S+ + L+D Y + G + + +++ + + ++ +
Sbjct: 232 DAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLL 291
Query: 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216
K G +E EN LKEM GF D+ T F I + + S + E A G + +
Sbjct: 292 KGLFKAGMVEDAENVLKEMKDLGFVPDAFT---FSILFDGYSSNEKAEAALGVYETA--- 345
Query: 217 IDKEGIRAVSFT-------YLKERKFFMLGEFL-RDVGLGRKDLGNLLWNLLLLSYAGNF 268
+D G++ ++T KE K E L R++ G +++N ++ Y
Sbjct: 346 VDS-GVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVP-NEVIYNTMIDGYCRKG 403
Query: 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328
+ + + M + G PD +N F + + + MK + V P + TY
Sbjct: 404 DLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYN 463
Query: 329 CVVDAYLDKRLGRNLDF 345
++ Y GR +F
Sbjct: 464 ILIGGY-----GRKYEF 475
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
+L++ L K A L+ + +GL PD T +L+ Y G V ++EE+ S
Sbjct: 569 TLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRS 628
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV---SCRNADLLPEVYSRAISCFGKQGQL 165
+++ L+ C E I + +++ DLL VY+ + C+ G +
Sbjct: 629 GIKPTLKTYHLLISL-----CTKEGIELTERLFGEMSLKPDLL--VYNGVLHCYAVHGDM 681
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223
E N K+M+ + +D T N+ I+ + G L E+ R LID+ R
Sbjct: 682 EKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEV----------RSLIDEMNAR 729
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 56/292 (19%), Positives = 104/292 (35%), Gaps = 48/292 (16%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
A +VED A ++ +K G +PD T L Y++N A V+E +
Sbjct: 297 AGMVED---------AENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVD 347
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQL 165
S ++ S L++A + G + I+ + + L+P +Y+ I + ++G L
Sbjct: 348 SGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKG--LVPNEVIYNTMIDGYCRKGDL 405
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225
++ M +G D N I RF L EME A + + + +G+
Sbjct: 406 VGARMKIEAMEKQGMKPDHLAYNCLI---RRFCELGEMENAEKEVNKMKL----KGVSPS 458
Query: 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285
TY N+L+ Y ++ M + G
Sbjct: 459 VETY----------------------------NILIGGYGRKYEFDKCFDILKEMEDNGT 490
Query: 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337
P++ ++ + S + + M+ V P + Y ++D K
Sbjct: 491 MPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSK 542
Score = 38.9 bits (89), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 47 CASLVEDLGRKK-KPHLA--HQLVNTVKSEG------------LLPDNSTLCALMLCYAN 91
C +L E++ R KP L H L++ EG L PD ++ CYA
Sbjct: 618 CIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAV 677
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151
+G + +A + ++++ S L + L+ ++G E+ S+ID+++ R ++ PE
Sbjct: 678 HGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAR--EMEPEA 735
Query: 152 YSRAISCFGKQGQLELMENTL--KEMVSRGFSVDSATGNAFI 191
+ I G + M + +EM +GF +D GN +
Sbjct: 736 DTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELV 777
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 115/288 (39%), Gaps = 10/288 (3%)
Query: 40 KQEGFV-DCAS---LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95
KQ G + D S L+ GR ++P A ++ ++ E P+ T AL+ Y +NGF+
Sbjct: 382 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFL 441
Query: 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155
EA ++ ++ +V + L+ A R + +++ R +L Y+ A
Sbjct: 442 AEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSA 501
Query: 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215
I + +LE + M + DS T F I S +++ A LK
Sbjct: 502 IGSYINAAELEKAIALYQSMRKKKVKADSVT---FTILISGSCRMSKYPEAISYLKEMED 558
Query: 216 L---IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272
L + KE +V Y K+ + + + + + + +L +Y + K
Sbjct: 559 LSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGK 618
Query: 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320
F+ M G PD + AF++ ++ + ++ M+ + +
Sbjct: 619 ACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEI 666
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/292 (18%), Positives = 117/292 (40%), Gaps = 11/292 (3%)
Query: 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL 148
+A + +V +A+ ++ E+ S + L++A+GR G + ++++D + A +
Sbjct: 153 HARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDM--LRAAIA 210
Query: 149 PE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P Y+ I+ G G K+M G D T N + Y ++ +
Sbjct: 211 PSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSY 270
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLK----ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLL 262
+ +K ++ D + + K + + R D+ + L
Sbjct: 271 FELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLY 330
Query: 263 SYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322
S G ++++ + F M G P++ ++N A++ M L +K + P
Sbjct: 331 SVKG--EIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIP 388
Query: 323 DLVTYGCVVDAY-LDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDF 373
D+V+Y C++++Y ++ G+ + L P V T + +A+G F
Sbjct: 389 DVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGF 440
Score = 38.5 bits (88), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 105/267 (39%), Gaps = 18/267 (6%)
Query: 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136
PD T ++M Y+ G + + V+E +++ ++ + LM AY G +S+
Sbjct: 318 PDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSV 377
Query: 137 IDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194
+ + + ++P+V Y+ ++ +G+ Q + M + T NA I Y
Sbjct: 378 LGDI--KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAY 435
Query: 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIR--AVSFTYL-----KERKFFMLGEFLRDVGL 247
G L E + ++ +++GI+ VS L + +K + L
Sbjct: 436 GSNGFLAEAVEIFRQM-------EQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQS 488
Query: 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307
+L +N + SY +++ + M + D TF I RMS + +
Sbjct: 489 RGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPE 548
Query: 308 LHLSLEHMKHESVGPDLVTYGCVVDAY 334
L+ M+ S+ Y V+ AY
Sbjct: 549 AISYLKEMEDLSIPLTKEVYSSVLCAY 575
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113
LG+ K+ H L +K +G PD T L+ + G V EA ++EEL S
Sbjct: 452 LGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPD 511
Query: 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENT 171
+ + L++ G+ G +E ++ + L P+V YS + CFGK ++E+ +
Sbjct: 512 IISYNSLINCLGKNGDVDEAHVRFKEM--QEKGLNPDVVTYSTLMECFGKTERVEMAYSL 569
Query: 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
+EM+ +G + T N + + G E Y ++K ++G+ S TY
Sbjct: 570 FEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMK-------QQGLTPDSITY 620
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLE 313
+++N + + ++ + F +M + G PD+ T+NI +F R+ + E
Sbjct: 442 TMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFE 501
Query: 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDD------SPVVSTDPYVFEA 367
++ PD+++Y +++ LG+N D + + + +P V T + E
Sbjct: 502 ELERSDCKPDIISYNSLINC-----LGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMEC 556
Query: 368 FGKGD 372
FGK +
Sbjct: 557 FGKTE 561
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 41/186 (22%)
Query: 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210
+Y+ S GK Q+ + + ++M G S D T N I + R G + E + L
Sbjct: 444 MYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEEL 503
Query: 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKM 270
+RS + D+ + +N L+ N +
Sbjct: 504 ERSD---------------------------------CKPDI--ISYNSLINCLGKNGDV 528
Query: 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAF---SRMSMFWDLHLSLEHMKHESVGPDLVTY 327
F M E G +PD+ T++ F R+ M + L E M + P++VTY
Sbjct: 529 DEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSL---FEEMLVKGCQPNIVTY 585
Query: 328 GCVVDA 333
++D
Sbjct: 586 NILLDC 591
Score = 38.5 bits (88), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ GR + A + ++ PD + +L+ C NG V EA V ++E+
Sbjct: 483 LIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKG 542
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
V S LM+ +G+ S+ +++ + Y+ + C K G+
Sbjct: 543 LNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAV 602
Query: 170 NTLKEMVSRGFSVDSAT 186
+ +M +G + DS T
Sbjct: 603 DLYSKMKQQGLTPDSIT 619
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL-- 106
SL+ LG+ AH ++ +GL PD T LM C+ V A ++EE+L
Sbjct: 517 SLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVK 576
Query: 107 -SSSFVLSVQVLSDLMDAYGRIG 128
+++ +L D ++ GR
Sbjct: 577 GCQPNIVTYNILLDCLEKNGRTA 599
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 10/172 (5%)
Query: 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108
SL+ L K LA + + + GLLPD+ST +++L Y G V +A + E +
Sbjct: 526 SLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKH 585
Query: 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ-VSCRNADLLPEVYSRAISCFGKQGQLEL 167
SF + L++ + G + ++ + + R D + Y+ IS F K +L+
Sbjct: 586 SFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVDTV--TYNTMISAFCKDKKLKE 643
Query: 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET-------AYGRLKR 212
+ L EM +G D T N+FI G L+E + +G +KR
Sbjct: 644 AYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFGSMKR 695
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 114/277 (41%), Gaps = 50/277 (18%)
Query: 27 KNGDL--ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80
K GDL A +++R Q+G + ++++ L +++K AH L+N+ G + D
Sbjct: 428 KVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEV 487
Query: 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140
T L++ + V +A +W+E+ +V + L+ G + D++
Sbjct: 488 TYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDEL 547
Query: 141 SCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198
+ + LLP+ ++ I + K+G++E E + F D+ T N + + G
Sbjct: 548 A--ESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEG 605
Query: 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSF--TYLKERKFFMLGEFLRDVGLGRKDLGNLL 256
+TE +A++F T ++ER ++ +
Sbjct: 606 -MTE--------------------KALNFFNTLIEER-----------------EVDTVT 627
Query: 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
+N ++ ++ + K+K M E G PD T+N
Sbjct: 628 YNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYN 664
Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 34/160 (21%)
Query: 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233
+MV G S++ T N + Y G L E A G L+R
Sbjct: 194 DMVKIGVSLNVQTFNVLVNGYCLEGKL---EDALGMLER--------------------- 229
Query: 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
M+ EF + + N+ +N +L + + ++ L+ + M + G P+ T+N
Sbjct: 230 ---MVSEF-------KVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYN 279
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+ ++ + +E MK +V PDL TY +++
Sbjct: 280 NLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILING 319
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 106/275 (38%), Gaps = 25/275 (9%)
Query: 27 KNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALM 86
KNG + ++ G+ SL E A Q+V +K +LPD T L+
Sbjct: 268 KNGLVPNRVTYNNLVYGYCKLGSLKE----------AFQIVELMKQTNVLPDLCTYNILI 317
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
N G + E + + + S V + L+D +G E +++Q+
Sbjct: 318 NGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVK 377
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVS-RGFSVDSATGNAFIIYYSRFGSLTEMET 205
++ ++ K+ + E + +KE+V GFS D T + I Y + G L+
Sbjct: 378 ANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLS---- 433
Query: 206 AYGRLKRSRHLIDKEGIRAVSFT-------YLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258
G L+ R + K GI+ + T KERK L + + +
Sbjct: 434 --GALEMMREMGQK-GIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYG 490
Query: 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
L++ + K++ + M + P ++TFN
Sbjct: 491 TLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFN 525
Score = 32.0 bits (71), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 257 WNLLLLSYAGNFKMKSLQREFMRM-SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315
+N+L+ Y K++ RM SE +PD T+N A S+ DL L M
Sbjct: 207 FNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDM 266
Query: 316 KHESVGPDLVTYGCVVDAY 334
K + P+ VTY +V Y
Sbjct: 267 KKNGLVPNRVTYNNLVYGY 285
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/284 (17%), Positives = 110/284 (38%), Gaps = 13/284 (4%)
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A +L+ + + PD T AL+ G + EA+ + +E+L + ++
Sbjct: 350 AQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIY 409
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGF 180
+ + F++ + D ++ P+V ++ I + + +++ L+E+ RG
Sbjct: 410 GFCKHNRFDDAKHMFDLMAS------PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 463
Query: 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240
++ T N I + +L + + + D + + + + K E
Sbjct: 464 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 523
Query: 241 FLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300
+ + + DL + +N+++ K+ F + G PD+ T+N+ F
Sbjct: 524 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 583
Query: 301 RMSMFWDLHLSLEHMKHESVGPDLVTY-----GCVVDAYLDKRL 339
S D ++ MK PD TY GC+ +DK +
Sbjct: 584 GKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSI 627
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/292 (18%), Positives = 114/292 (39%), Gaps = 20/292 (6%)
Query: 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107
++V + + A L++ ++ + PD A++ +G +AQ ++ E+L
Sbjct: 265 GTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE 324
Query: 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR--NADLLPEVYSRAISCFGKQGQL 165
+V + ++D + G +++ ++ + R N D+L ++ IS K+G+L
Sbjct: 325 KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVL--TFNALISASVKEGKL 382
Query: 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID-KEGIRA 224
E EM+ R D+ T N+ I + + + R ++H+ D
Sbjct: 383 FEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK----------HNRFDDAKHMFDLMASPDV 432
Query: 225 VSF-----TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279
V+F Y + ++ + LR++ +N L+ + + + Q F
Sbjct: 433 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQE 492
Query: 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331
M G PD T NI F + E ++ + D V Y ++
Sbjct: 493 MISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIII 544
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 21/343 (6%)
Query: 3 TFSLSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHL 62
T+S ++G K RF ++ +I R + ++L+ + R
Sbjct: 440 TYSALINGFCKVGRFKTAK--------EIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKE 491
Query: 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122
A ++ + EG D+ T L+ G V EA+ + S + + L++
Sbjct: 492 AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLIN 551
Query: 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182
YG G + S+ D+++ Y + K G L E LK + + +V
Sbjct: 552 GYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAV 611
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242
D+ N + + G+L + + +G + + L D ++ ++ K + F
Sbjct: 612 DTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFA 671
Query: 243 RDVGLGRKDLGNLLWNLLLLSY-------AGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295
++ + GN+L N ++ + AG +K RE +M G PD+ T N
Sbjct: 672 KEA----EARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFRE--QMDNLGHTPDIVTTNAM 725
Query: 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338
+SRM + L M +++ GP+L TY ++ Y ++
Sbjct: 726 IDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRK 768
Score = 38.5 bits (88), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 54/288 (18%), Positives = 106/288 (36%), Gaps = 6/288 (2%)
Query: 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109
L+ DL R + + L+ ++ + P+ T L+ ++N G VL A + E+LS
Sbjct: 269 LIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFG 328
Query: 110 FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169
+ + L+D + G F E + + + + Y + K + +L
Sbjct: 329 LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLAR 388
Query: 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229
M G V T I + G L E + + D A+ +
Sbjct: 389 GFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGF 448
Query: 230 LKERKFFMLGEF---LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286
K +F E + VGL ++++ L+ + +K R + M G
Sbjct: 449 CKVGRFKTAKEIVCRIYRVGLSPN---GIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHT 505
Query: 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334
D TFN+ + + + + M + + P+ V++ C+++ Y
Sbjct: 506 RDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGY 553
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 2/191 (1%)
Query: 149 PEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
P VY+ + K G+ + + LKEM+ R D AT N I GS +
Sbjct: 156 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYL 215
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266
++++S + V Y K+ +F E L + D +N+L+
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
+ ++ M + HP+ T+N FS L M + P+ VT
Sbjct: 276 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVT 335
Query: 327 YGCVVDAYLDK 337
+ ++D ++ +
Sbjct: 336 FNALIDGHISE 346
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 110/280 (39%), Gaps = 22/280 (7%)
Query: 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124
Q + + G +PD+ST A M C ++E +++ +S L+ A
Sbjct: 341 QFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQAL 400
Query: 125 GRIGCFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSV 182
F+E + Q+ LL VYS I C K ++E L EM RG S
Sbjct: 401 LNAQRFSEGDRYLKQMGVDG--LLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISP 458
Query: 183 DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-------KERK- 234
+ T N F+ YS G + ++ +L L+ ++F+ + KE K
Sbjct: 459 NLVTFNTFLSGYSVRGDVKKVHGVLEKL-----LVHGFKPDVITFSLIINCLCRAKEIKD 513
Query: 235 -FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293
F E L + G+ + + +N+L+ S + F +M E G PDL +N
Sbjct: 514 AFDCFKEML-EWGI---EPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYN 569
Query: 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333
+F +M L+ M + PD TY ++ A
Sbjct: 570 ATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKA 609
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152
G +L + + +E+ S + +S +++ L+ ++GR+G + Q+S +Y
Sbjct: 124 GPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLY 183
Query: 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212
+ I K L+L ++M S G D T N I + G + E A +K+
Sbjct: 184 NAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDE---AIRLVKQ 240
Query: 213 SRHLIDKEGIRAVSFTY 229
+++EG R FTY
Sbjct: 241 ----MEQEGNRPNVFTY 253
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 24/255 (9%)
Query: 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151
NG + EA ++W + + + + G N+ + ++ +V L
Sbjct: 372 NGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYA 431
Query: 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI---IYYSRFGSLTEMETAYG 208
Y+ I C K+ +LE N +KEM G ++S NA I I SR G + G
Sbjct: 432 YASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMG 491
Query: 209 RLKRSRHLIDKEGIRAVSFTY-------LKERKFFMLGEFLRDV--GLGRKDLGNLLWNL 259
K G R +Y K KF F++++ + DL +++
Sbjct: 492 ----------KNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKT--YSI 539
Query: 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319
LL + K+ + + ++G D+ NI + D + +M+H +
Sbjct: 540 LLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRN 599
Query: 320 VGPDLVTYGCVVDAY 334
+LVTY +++ +
Sbjct: 600 CTANLVTYNTLMEGF 614
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 31/239 (12%)
Query: 32 ARKIIRYRKQEGF----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87
AR + + +EGF ++++ DL + K A +L + + G+ PD + L+
Sbjct: 168 ARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILI- 226
Query: 88 CYANNGFVLE-----AQVVWEELLSSSFVL-SVQVLSDLMDAYGRIGCFNEIISIIDQVS 141
+GF+ E A +W+ LL S V +V+ + ++ + G ++ + I +++
Sbjct: 227 ----DGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMK 282
Query: 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201
+ YS I G ++ E+ E+ R S+D T N + + R G +
Sbjct: 283 QNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIK 342
Query: 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260
E L+ R + K + VS+ L + L + G+ D ++W L+
Sbjct: 343 E------SLELWRIMEHKNSVNIVSYNIL-------IKGLLEN---GKIDEATMIWRLM 385
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/325 (20%), Positives = 132/325 (40%), Gaps = 17/325 (5%)
Query: 22 HQTHPKN-GDLARKIIRYRKQEGFV-------DCASLVEDLGRKKKPHLAHQLVNTVKSE 73
HQ N G L+ K + Y G+ S V LG+ K A +V+++
Sbjct: 29 HQLINSNCGILSLKFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVK---FAEDIVHSMPRF 85
Query: 74 GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS-SFVLSVQVLS--DLMDAYGRIGCF 130
G PD + +L+ + NG + A +V E L +S F+ ++S L + + ++
Sbjct: 86 GCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKML 145
Query: 131 NEIISIID-QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189
+E+ + + C + +++ YS I F K G+L+L + M S + T
Sbjct: 146 DEVFVYMGVMLKCCSPNVV--TYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTC 203
Query: 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249
I Y + G L + Y ++R R ++ A+ + K+ + E + R
Sbjct: 204 LIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDR 263
Query: 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
+ +L++ ++ + + + +M G D+T + + +
Sbjct: 264 VEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEAT 323
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAY 334
+E M+ + PD+V + +++AY
Sbjct: 324 EIVEDMEKSDLVPDMVIFTTMMNAY 348
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 57/325 (17%), Positives = 128/325 (39%), Gaps = 29/325 (8%)
Query: 25 HPKNGDLA------RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD 78
+ K GDL +++ R R V +L++ +K + A ++ + + + + P+
Sbjct: 208 YCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPN 267
Query: 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138
+ ++ + G A ++L+ L + ++ G E I++
Sbjct: 268 SLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVE 327
Query: 139 QVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196
+ +DL+P+ +++ ++ + K G+++ N +++ RGF D + I ++
Sbjct: 328 DM--EKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAK 385
Query: 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF---LRDVGLGRKDLG 253
G L E Y ++++ ++ I A+ KE F + + + GL
Sbjct: 386 NGQLHE-AIVYFCIEKANDVMYTVLIDALC----KEGDFIEVERLFSKISEAGLVPDKFM 440
Query: 254 NLLWNLLLLSYAGN----FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLH 309
W + L GN FK+K+ RM + G DL + + + +
Sbjct: 441 YTSW-IAGLCKQGNLVDAFKLKT------RMVQEGLLLDLLAYTTLIYGLASKGLMVEAR 493
Query: 310 LSLEHMKHESVGPDLVTYGCVVDAY 334
+ M + + PD + ++ AY
Sbjct: 494 QVFDEMLNSGISPDSAVFDLLIRAY 518
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 131/317 (41%), Gaps = 28/317 (8%)
Query: 33 RKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY--- 89
+++IR + Q ++ L + K + A ++ +K G P+ + L+ Y
Sbjct: 212 KEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKL 271
Query: 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY-------GRIGCFNEIISIIDQVSC 142
NG + +A V +E++ + ++ + L+D + G + F E++ DQ
Sbjct: 272 GGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEML---DQ--- 325
Query: 143 RNADLLPEV--YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200
D+ P V Y+ I+ G++ + +MVS G + T NA I + + L
Sbjct: 326 ---DVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDML 382
Query: 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF---FMLGEFLRDVGLGRKDLGNLLW 257
E +G +K + + Y K K F L E + G+ D+G +
Sbjct: 383 KEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGI-VPDVGT--Y 439
Query: 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317
N L+ N +++ ++ F +++ G PDL TF+I + R + L+ M
Sbjct: 440 NCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSK 498
Query: 318 ESVGPDLVTYGCVVDAY 334
+ P +TY V+ Y
Sbjct: 499 MGLKPRHLTYNIVMKGY 515
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 114/261 (43%), Gaps = 22/261 (8%)
Query: 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD 146
LC N G + EA + ++++S+ ++ + L++ + + E + + V + A
Sbjct: 341 LC--NGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAV 398
Query: 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206
+Y+ I + K G+++ +EM G D T N I R G++ +
Sbjct: 399 PTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKL 458
Query: 207 YGRLKRSRHLIDKEGIRAVSFTYLKE--------RKFFMLGEFLRDVGLGRKDLGNLLWN 258
+ +L S+ L D V+F L E RK ML + + +GL + +L +N
Sbjct: 459 FDQLT-SKGLPD-----LVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPR---HLTYN 509
Query: 259 LLLLSYA--GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316
+++ Y GN K + R M E ++ ++N+ +S+ D ++ L M
Sbjct: 510 IVMKGYCKEGNLKAATNMRTQME-KERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEML 568
Query: 317 HESVGPDLVTYGCVVDAYLDK 337
+ + P+ +TY V + +D+
Sbjct: 569 EKGLVPNRITYEIVKEEMVDQ 589
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 100/245 (40%), Gaps = 17/245 (6%)
Query: 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156
+ + V++E++ +V + +++A + G N+ +++ + Y+ I
Sbjct: 206 DVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLI 265
Query: 157 SCF---GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213
+ G G++ + LKEMV S + T N I + + +L G +K
Sbjct: 266 DGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLP------GSMKVF 319
Query: 214 RHLIDKEGIRAVSFTYLKERKFFMLGE------FLRDVGLGRKDLGNLL-WNLLLLSYAG 266
+ ++D++ ++ +Y G +RD + NL+ +N L+ +
Sbjct: 320 KEMLDQD-VKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCK 378
Query: 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326
N +K F + G P +N+ A+ ++ D E M+ E + PD+ T
Sbjct: 379 NDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGT 438
Query: 327 YGCVV 331
Y C++
Sbjct: 439 YNCLI 443
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,458,280
Number of Sequences: 539616
Number of extensions: 6073362
Number of successful extensions: 20475
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 18382
Number of HSP's gapped (non-prelim): 1450
length of query: 412
length of database: 191,569,459
effective HSP length: 120
effective length of query: 292
effective length of database: 126,815,539
effective search space: 37030137388
effective search space used: 37030137388
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)