Query 040580
Match_columns 412
No_of_seqs 437 out of 1914
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 09:46:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.2E-64 2.6E-69 499.1 45.4 383 16-398 409-799 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.2E-64 1.1E-68 494.6 43.8 390 14-407 371-773 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.5E-62 5.5E-67 479.0 37.2 385 13-407 158-547 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.7E-60 3.8E-65 476.5 39.5 385 14-407 223-676 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 6.9E-60 1.5E-64 472.2 37.3 382 15-407 123-508 (857)
6 PLN03081 pentatricopeptide (PP 100.0 2.4E-58 5.2E-63 451.0 36.3 382 14-407 88-513 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.8E-25 1.9E-29 222.8 42.7 376 21-407 507-890 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-24 5.4E-29 219.4 42.6 378 21-407 439-856 (899)
9 PRK11788 tetratricopeptide rep 99.9 9.5E-22 2.1E-26 181.1 35.0 302 51-359 42-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 7.4E-22 1.6E-26 181.8 32.3 308 21-340 43-363 (389)
11 PRK15174 Vi polysaccharide exp 99.9 8.8E-18 1.9E-22 162.7 40.2 323 18-350 47-378 (656)
12 PRK15174 Vi polysaccharide exp 99.9 1.5E-17 3.2E-22 161.1 41.0 352 23-385 15-380 (656)
13 PRK11447 cellulose synthase su 99.8 8.2E-17 1.8E-21 166.3 42.9 377 21-408 277-731 (1157)
14 TIGR00990 3a0801s09 mitochondr 99.8 1.2E-16 2.7E-21 155.0 41.4 356 47-409 130-563 (615)
15 KOG4422 Uncharacterized conser 99.8 4.5E-16 9.7E-21 133.5 34.2 356 35-396 198-600 (625)
16 TIGR00990 3a0801s09 mitochondr 99.8 1E-15 2.2E-20 148.7 41.0 360 18-385 132-570 (615)
17 PRK11447 cellulose synthase su 99.8 8.4E-16 1.8E-20 158.8 38.7 364 9-384 299-738 (1157)
18 PRK10049 pgaA outer membrane p 99.8 2.6E-15 5.7E-20 148.6 39.4 380 18-407 20-446 (765)
19 KOG4626 O-linked N-acetylgluco 99.8 2.3E-16 5E-21 141.2 26.2 375 14-402 117-504 (966)
20 PRK10049 pgaA outer membrane p 99.8 3.9E-15 8.4E-20 147.4 36.2 362 14-385 50-455 (765)
21 PRK14574 hmsH outer membrane p 99.8 8.3E-14 1.8E-18 135.9 40.5 182 22-209 43-228 (822)
22 KOG4422 Uncharacterized conser 99.7 2.4E-14 5.3E-19 123.0 30.7 302 76-383 204-548 (625)
23 KOG4626 O-linked N-acetylgluco 99.7 3.1E-15 6.7E-20 134.1 26.2 351 44-408 116-476 (966)
24 PRK14574 hmsH outer membrane p 99.7 2.2E-13 4.8E-18 133.0 38.8 350 53-410 43-472 (822)
25 PRK10747 putative protoheme IX 99.7 9.8E-13 2.1E-17 120.5 33.5 280 57-350 97-387 (398)
26 PRK10747 putative protoheme IX 99.6 1.7E-12 3.7E-17 118.9 32.7 278 26-315 97-387 (398)
27 PF13429 TPR_15: Tetratricopep 99.6 5.1E-15 1.1E-19 129.6 12.8 256 51-314 15-273 (280)
28 TIGR00540 hemY_coli hemY prote 99.6 4.1E-12 8.8E-17 117.1 32.4 299 47-350 85-396 (409)
29 TIGR00540 hemY_coli hemY prote 99.6 5.5E-12 1.2E-16 116.2 32.7 288 24-316 95-397 (409)
30 PF13429 TPR_15: Tetratricopep 99.6 1.2E-14 2.6E-19 127.2 13.4 260 84-350 13-274 (280)
31 PRK09782 bacteriophage N4 rece 99.6 5.6E-11 1.2E-15 118.8 40.3 365 27-403 356-759 (987)
32 PRK09782 bacteriophage N4 rece 99.6 1.9E-11 4.1E-16 122.1 36.7 275 124-408 386-697 (987)
33 COG3071 HemY Uncharacterized e 99.6 4.2E-11 9.1E-16 102.8 31.7 284 56-350 96-387 (400)
34 COG2956 Predicted N-acetylgluc 99.6 3.3E-11 7.1E-16 100.5 29.5 297 46-350 38-344 (389)
35 KOG2002 TPR-containing nuclear 99.5 2E-11 4.4E-16 115.3 29.3 386 16-410 310-738 (1018)
36 COG3071 HemY Uncharacterized e 99.5 1.8E-10 3.9E-15 98.9 31.6 281 92-382 97-386 (400)
37 KOG4318 Bicoid mRNA stability 99.5 2.6E-12 5.7E-17 120.0 21.6 254 65-339 11-286 (1088)
38 KOG2076 RNA polymerase III tra 99.5 3.2E-10 6.9E-15 106.7 35.1 320 26-350 152-509 (895)
39 COG2956 Predicted N-acetylgluc 99.5 1.7E-10 3.7E-15 96.3 29.3 287 26-318 48-347 (389)
40 KOG2076 RNA polymerase III tra 99.5 4.2E-10 9.1E-15 105.9 35.0 347 53-406 149-544 (895)
41 KOG2002 TPR-containing nuclear 99.5 1.1E-10 2.3E-15 110.6 31.0 386 14-407 271-699 (1018)
42 PF13041 PPR_2: PPR repeat fam 99.5 1.7E-13 3.8E-18 85.0 6.2 49 287-335 1-49 (50)
43 KOG2003 TPR repeat-containing 99.5 2.5E-10 5.5E-15 99.5 27.6 356 17-379 280-715 (840)
44 KOG1155 Anaphase-promoting com 99.5 7.4E-10 1.6E-14 96.9 30.1 281 120-409 233-528 (559)
45 KOG1155 Anaphase-promoting com 99.4 1.4E-09 3.1E-14 95.1 29.9 288 86-383 234-533 (559)
46 KOG1126 DNA-binding cell divis 99.4 1.2E-10 2.6E-15 106.1 24.1 283 59-357 334-625 (638)
47 PF13041 PPR_2: PPR repeat fam 99.4 6.5E-13 1.4E-17 82.4 6.6 49 77-125 1-49 (50)
48 KOG1126 DNA-binding cell divis 99.4 1.8E-10 3.9E-15 105.0 24.7 281 28-322 334-624 (638)
49 PRK12370 invasion protein regu 99.4 3.7E-10 8E-15 108.1 28.3 214 94-316 276-500 (553)
50 TIGR02521 type_IV_pilW type IV 99.4 4.8E-10 1E-14 95.2 26.0 131 80-212 32-163 (234)
51 TIGR02521 type_IV_pilW type IV 99.4 4.3E-10 9.3E-15 95.5 25.7 199 43-245 30-229 (234)
52 KOG4318 Bicoid mRNA stability 99.4 3.5E-11 7.7E-16 112.6 18.7 248 100-368 11-281 (1088)
53 PRK12370 invasion protein regu 99.4 7.2E-10 1.6E-14 106.1 27.0 247 61-319 278-536 (553)
54 KOG0495 HAT repeat protein [RN 99.3 1E-07 2.2E-12 87.2 35.6 354 14-382 517-876 (913)
55 KOG1915 Cell cycle control pro 99.3 1.1E-07 2.5E-12 83.7 34.3 125 267-396 417-548 (677)
56 KOG2003 TPR repeat-containing 99.3 7.6E-09 1.6E-13 90.5 26.6 378 18-403 242-709 (840)
57 KOG1129 TPR repeat-containing 99.3 7.4E-10 1.6E-14 92.7 19.2 228 83-317 227-457 (478)
58 KOG0495 HAT repeat protein [RN 99.3 3.4E-07 7.4E-12 83.9 36.4 380 17-404 410-867 (913)
59 PF12569 NARP1: NMDA receptor- 99.3 3.2E-08 7E-13 92.1 30.0 290 52-350 12-331 (517)
60 PF12569 NARP1: NMDA receptor- 99.2 3.8E-08 8.2E-13 91.6 28.4 287 21-316 12-332 (517)
61 KOG0547 Translocase of outer m 99.2 1.2E-07 2.6E-12 83.9 29.0 355 47-410 118-560 (606)
62 KOG1840 Kinesin light chain [C 99.2 1.4E-08 3.1E-13 93.3 24.6 242 46-315 201-476 (508)
63 KOG1129 TPR repeat-containing 99.2 9.8E-10 2.1E-14 92.0 15.1 233 48-288 227-461 (478)
64 KOG1840 Kinesin light chain [C 99.1 6.6E-08 1.4E-12 89.0 25.7 236 113-350 198-476 (508)
65 PRK11189 lipoprotein NlpI; Pro 99.1 1.7E-07 3.7E-12 82.4 27.6 217 58-283 40-265 (296)
66 KOG1915 Cell cycle control pro 99.1 1E-06 2.2E-11 78.0 31.0 195 150-350 323-533 (677)
67 KOG1173 Anaphase-promoting com 99.1 1.9E-07 4.2E-12 84.1 26.8 279 47-334 247-532 (611)
68 KOG1156 N-terminal acetyltrans 99.1 5.7E-06 1.2E-10 76.1 33.8 356 22-385 50-467 (700)
69 KOG2376 Signal recognition par 99.0 3.7E-06 7.9E-11 76.5 32.0 370 17-400 16-504 (652)
70 COG3063 PilF Tfp pilus assembl 99.0 6.3E-07 1.4E-11 72.0 24.0 195 47-245 38-233 (250)
71 cd05804 StaR_like StaR_like; a 99.0 4.2E-06 9.1E-11 76.1 32.9 197 46-245 8-212 (355)
72 cd05804 StaR_like StaR_like; a 99.0 1.3E-06 2.8E-11 79.5 29.5 300 15-317 8-335 (355)
73 PRK11189 lipoprotein NlpI; Pro 99.0 6.1E-07 1.3E-11 78.9 26.2 218 93-320 40-267 (296)
74 KOG2047 mRNA splicing factor [ 99.0 1.2E-05 2.7E-10 73.9 33.9 84 19-106 108-196 (835)
75 COG3063 PilF Tfp pilus assembl 99.0 1.1E-06 2.5E-11 70.5 24.0 196 81-315 37-233 (250)
76 KOG0547 Translocase of outer m 99.0 4.8E-07 1E-11 80.2 23.2 235 90-336 337-579 (606)
77 KOG1173 Anaphase-promoting com 98.9 1.4E-05 3.1E-10 72.5 29.8 278 81-366 246-530 (611)
78 PF12854 PPR_1: PPR repeat 98.9 2.6E-09 5.6E-14 59.5 3.9 32 109-140 2-33 (34)
79 KOG2047 mRNA splicing factor [ 98.9 3.8E-05 8.1E-10 70.8 32.2 297 14-315 249-612 (835)
80 PF12854 PPR_1: PPR repeat 98.9 2.8E-09 6.1E-14 59.3 3.7 32 284-315 2-33 (34)
81 PF04733 Coatomer_E: Coatomer 98.8 1.4E-07 2.9E-12 82.0 14.9 247 25-289 13-269 (290)
82 KOG3617 WD40 and TPR repeat-co 98.8 3.4E-05 7.3E-10 73.1 30.9 229 21-279 736-992 (1416)
83 KOG3785 Uncharacterized conser 98.8 4.5E-05 9.7E-10 65.4 27.8 370 20-407 29-447 (557)
84 PF04733 Coatomer_E: Coatomer 98.8 9.4E-07 2E-11 76.8 18.2 81 268-350 181-262 (290)
85 KOG4340 Uncharacterized conser 98.8 1.8E-06 4E-11 71.9 18.6 291 81-384 12-337 (459)
86 KOG1174 Anaphase-promoting com 98.8 4E-05 8.7E-10 67.0 27.2 281 57-350 209-497 (564)
87 KOG1174 Anaphase-promoting com 98.8 4.1E-05 8.9E-10 66.9 27.2 265 43-317 231-499 (564)
88 KOG1125 TPR repeat-containing 98.7 3.8E-06 8.2E-11 76.3 21.1 252 89-347 295-565 (579)
89 KOG3785 Uncharacterized conser 98.7 3.6E-05 7.8E-10 66.0 25.4 147 19-177 63-213 (557)
90 KOG1156 N-terminal acetyltrans 98.7 0.00011 2.4E-09 67.9 30.0 250 25-281 19-281 (700)
91 KOG1128 Uncharacterized conser 98.7 1.4E-05 3E-10 74.6 23.8 236 111-370 395-635 (777)
92 KOG1914 mRNA cleavage and poly 98.7 0.00026 5.6E-09 64.3 31.8 73 12-87 19-94 (656)
93 PRK04841 transcriptional regul 98.7 0.00013 2.9E-09 75.1 32.9 331 54-384 384-758 (903)
94 PRK04841 transcriptional regul 98.7 0.00017 3.7E-09 74.3 33.6 325 25-350 386-757 (903)
95 KOG1070 rRNA processing protei 98.6 3.4E-05 7.4E-10 77.0 25.8 238 102-345 1447-1692(1710)
96 KOG4340 Uncharacterized conser 98.6 4.4E-05 9.6E-10 63.9 22.7 287 16-314 13-335 (459)
97 TIGR03302 OM_YfiO outer membra 98.6 1.1E-05 2.3E-10 68.8 20.2 183 79-283 33-232 (235)
98 KOG1070 rRNA processing protei 98.6 9.4E-05 2E-09 74.1 27.2 225 78-307 1457-1689(1710)
99 PLN02789 farnesyltranstransfer 98.6 0.00025 5.4E-09 62.6 27.2 128 48-179 41-172 (320)
100 PRK10370 formate-dependent nit 98.5 1.1E-05 2.3E-10 66.2 17.1 119 92-213 52-173 (198)
101 PRK15359 type III secretion sy 98.5 8.1E-06 1.8E-10 63.3 15.6 91 85-177 30-120 (144)
102 KOG3616 Selective LIM binding 98.5 4.4E-05 9.6E-10 71.5 22.4 170 156-350 739-908 (1636)
103 KOG0985 Vesicle coat protein c 98.5 0.00015 3.3E-09 70.3 26.4 228 17-276 988-1242(1666)
104 KOG1128 Uncharacterized conser 98.5 4.8E-05 1E-09 71.2 22.2 217 80-317 399-615 (777)
105 TIGR03302 OM_YfiO outer membra 98.5 2.5E-05 5.4E-10 66.5 19.4 186 43-249 32-233 (235)
106 KOG2376 Signal recognition par 98.5 0.00089 1.9E-08 61.5 32.3 346 50-407 18-477 (652)
107 PLN02789 farnesyltranstransfer 98.5 0.00033 7.3E-09 61.8 26.3 119 93-214 51-172 (320)
108 KOG3616 Selective LIM binding 98.5 6.4E-05 1.4E-09 70.5 22.0 172 190-385 738-910 (1636)
109 COG5010 TadD Flp pilus assembl 98.5 4.7E-05 1E-09 62.7 18.6 126 80-208 101-226 (257)
110 KOG4162 Predicted calmodulin-b 98.5 0.0016 3.4E-08 61.8 31.0 360 43-407 322-773 (799)
111 PRK15359 type III secretion sy 98.5 2E-05 4.4E-10 61.1 15.6 108 34-143 14-121 (144)
112 KOG1125 TPR repeat-containing 98.4 6.4E-05 1.4E-09 68.5 20.4 217 21-244 293-523 (579)
113 PRK10370 formate-dependent nit 98.4 4.9E-05 1.1E-09 62.4 18.3 120 56-178 51-173 (198)
114 COG5010 TadD Flp pilus assembl 98.4 7.9E-05 1.7E-09 61.4 18.9 157 118-278 70-226 (257)
115 KOG4162 Predicted calmodulin-b 98.4 0.00077 1.7E-08 63.8 27.0 363 16-383 326-780 (799)
116 TIGR00756 PPR pentatricopeptid 98.4 4.6E-07 9.9E-12 51.2 4.0 33 256-288 2-34 (35)
117 TIGR00756 PPR pentatricopeptid 98.4 6.6E-07 1.4E-11 50.5 4.3 33 151-183 2-34 (35)
118 PF13812 PPR_3: Pentatricopept 98.4 8E-07 1.7E-11 49.8 4.2 33 255-287 2-34 (34)
119 TIGR02552 LcrH_SycD type III s 98.4 3.4E-05 7.5E-10 59.3 14.8 97 80-178 18-114 (135)
120 KOG0985 Vesicle coat protein c 98.3 0.0018 3.8E-08 63.4 28.1 60 42-106 950-1011(1666)
121 PRK15179 Vi polysaccharide bio 98.3 0.00055 1.2E-08 66.8 25.4 183 75-267 82-268 (694)
122 PF13812 PPR_3: Pentatricopept 98.3 9.4E-07 2E-11 49.5 4.1 33 45-77 2-34 (34)
123 KOG0548 Molecular co-chaperone 98.3 0.0021 4.5E-08 58.5 26.4 355 22-387 11-456 (539)
124 PRK14720 transcript cleavage f 98.3 0.00078 1.7E-08 66.7 25.7 146 43-211 30-176 (906)
125 PF08579 RPM2: Mitochondrial r 98.3 1.4E-05 3.1E-10 56.7 9.5 79 48-126 29-116 (120)
126 PRK15179 Vi polysaccharide bio 98.3 0.00036 7.7E-09 68.1 22.4 179 43-232 85-268 (694)
127 PRK14720 transcript cleavage f 98.3 0.001 2.2E-08 66.0 25.3 236 12-300 30-268 (906)
128 KOG0624 dsRNA-activated protei 98.2 0.0024 5.1E-08 55.0 28.9 292 18-317 43-369 (504)
129 PF10037 MRP-S27: Mitochondria 98.2 2.2E-05 4.9E-10 71.0 13.0 120 218-337 65-186 (429)
130 PF08579 RPM2: Mitochondrial r 98.2 2.8E-05 6.1E-10 55.3 10.5 82 256-337 27-117 (120)
131 PF10037 MRP-S27: Mitochondria 98.2 3.1E-05 6.6E-10 70.1 13.2 121 76-196 63-185 (429)
132 TIGR02552 LcrH_SycD type III s 98.2 0.00014 3E-09 55.9 15.0 111 101-214 5-115 (135)
133 COG4783 Putative Zn-dependent 98.2 0.0015 3.3E-08 58.8 22.8 114 91-207 318-431 (484)
134 KOG3617 WD40 and TPR repeat-co 98.2 0.00089 1.9E-08 63.9 22.2 320 43-407 725-1099(1416)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7.5E-05 1.6E-09 67.3 14.8 122 83-211 173-295 (395)
136 COG4783 Putative Zn-dependent 98.2 0.0018 3.8E-08 58.4 22.6 117 159-280 316-434 (484)
137 KOG1127 TPR repeat-containing 98.1 0.00088 1.9E-08 65.3 21.6 168 6-177 485-658 (1238)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 4.9E-05 1.1E-09 68.5 12.8 125 46-176 171-295 (395)
139 KOG0624 dsRNA-activated protei 98.1 0.0049 1.1E-07 53.1 26.1 176 228-407 164-360 (504)
140 PF09976 TPR_21: Tetratricopep 98.1 0.00034 7.5E-09 54.4 15.4 126 151-279 14-143 (145)
141 KOG1914 mRNA cleavage and poly 98.1 0.0084 1.8E-07 54.9 28.0 356 43-406 19-490 (656)
142 KOG3081 Vesicle coat complex C 98.1 0.00012 2.7E-09 60.4 12.6 179 25-214 84-272 (299)
143 PF09976 TPR_21: Tetratricopep 98.0 0.00035 7.7E-09 54.3 14.6 21 122-142 56-76 (145)
144 KOG3081 Vesicle coat complex C 98.0 0.0053 1.2E-07 51.0 23.3 50 268-318 187-236 (299)
145 PF01535 PPR: PPR repeat; Int 98.0 8.3E-06 1.8E-10 44.4 3.6 29 151-179 2-30 (31)
146 PF01535 PPR: PPR repeat; Int 98.0 8.8E-06 1.9E-10 44.3 3.5 29 46-74 2-30 (31)
147 PF06239 ECSIT: Evolutionarily 98.0 6.7E-05 1.4E-09 60.3 9.6 61 31-91 32-99 (228)
148 KOG3060 Uncharacterized conser 97.9 0.0077 1.7E-07 49.7 22.2 160 152-317 55-219 (289)
149 PF06239 ECSIT: Evolutionarily 97.9 0.00019 4.2E-09 57.7 11.0 87 254-340 47-154 (228)
150 cd00189 TPR Tetratricopeptide 97.9 0.00028 6.1E-09 49.7 11.1 84 89-174 10-93 (100)
151 KOG0548 Molecular co-chaperone 97.9 0.02 4.2E-07 52.5 27.3 328 16-350 39-452 (539)
152 PF14938 SNAP: Soluble NSF att 97.9 0.0034 7.4E-08 54.9 19.2 212 153-396 39-276 (282)
153 PF05843 Suf: Suppressor of fo 97.8 0.00049 1.1E-08 59.9 12.7 142 45-191 2-147 (280)
154 cd00189 TPR Tetratricopeptide 97.8 0.00044 9.5E-09 48.7 10.6 95 46-142 2-96 (100)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0013 2.8E-08 49.0 13.2 96 83-178 6-105 (119)
156 PF14938 SNAP: Soluble NSF att 97.8 0.011 2.4E-07 51.7 20.4 95 255-350 156-260 (282)
157 PF07079 DUF1347: Protein of u 97.7 0.03 6.4E-07 50.4 31.5 374 24-407 17-514 (549)
158 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0017 3.6E-08 48.4 13.1 97 47-143 5-105 (119)
159 PF12895 Apc3: Anaphase-promot 97.7 0.00014 3.1E-09 50.5 6.1 79 93-173 3-82 (84)
160 PF04840 Vps16_C: Vps16, C-ter 97.7 0.034 7.5E-07 49.1 25.5 110 221-350 179-288 (319)
161 PLN03088 SGT1, suppressor of 97.7 0.0019 4.1E-08 58.4 14.7 85 91-177 14-98 (356)
162 PF12895 Apc3: Anaphase-promot 97.6 0.00013 2.9E-09 50.6 5.5 81 57-139 2-83 (84)
163 PRK02603 photosystem I assembl 97.6 0.003 6.4E-08 50.8 13.7 91 43-134 34-126 (172)
164 CHL00033 ycf3 photosystem I as 97.6 0.0021 4.6E-08 51.4 12.8 80 45-125 36-117 (168)
165 CHL00033 ycf3 photosystem I as 97.6 0.0019 4.1E-08 51.7 12.5 95 79-174 35-138 (168)
166 PRK02603 photosystem I assembl 97.6 0.005 1.1E-07 49.5 14.8 88 79-167 35-124 (172)
167 KOG3060 Uncharacterized conser 97.6 0.031 6.6E-07 46.4 25.4 184 26-214 25-221 (289)
168 PF05843 Suf: Suppressor of fo 97.6 0.0033 7.1E-08 54.8 14.1 131 80-213 2-136 (280)
169 PRK15363 pathogenicity island 97.5 0.0035 7.6E-08 48.3 11.8 95 82-178 38-132 (157)
170 PRK15363 pathogenicity island 97.5 0.0032 7E-08 48.5 11.6 95 116-212 37-131 (157)
171 PLN03088 SGT1, suppressor of 97.5 0.0045 9.7E-08 56.0 14.5 91 52-144 10-100 (356)
172 KOG2796 Uncharacterized conser 97.3 0.013 2.9E-07 48.6 13.6 142 151-295 179-325 (366)
173 PRK10866 outer membrane biogen 97.3 0.092 2E-06 44.7 19.5 75 119-194 37-114 (243)
174 PRK10866 outer membrane biogen 97.3 0.093 2E-06 44.6 20.6 198 148-350 31-238 (243)
175 PF12688 TPR_5: Tetratrico pep 97.3 0.027 5.9E-07 41.7 14.0 53 89-141 11-65 (120)
176 KOG2053 Mitochondrial inherita 97.3 0.22 4.7E-06 48.8 34.1 224 24-251 20-258 (932)
177 PF14559 TPR_19: Tetratricopep 97.3 0.0013 2.8E-08 43.4 6.4 51 91-142 3-53 (68)
178 PF13432 TPR_16: Tetratricopep 97.2 0.0022 4.8E-08 41.8 7.3 52 89-141 7-58 (65)
179 KOG2796 Uncharacterized conser 97.2 0.02 4.3E-07 47.7 13.4 167 51-227 156-327 (366)
180 KOG1127 TPR repeat-containing 97.2 0.18 3.8E-06 50.1 21.6 159 81-244 494-655 (1238)
181 PRK10153 DNA-binding transcrip 97.2 0.072 1.6E-06 50.6 19.0 138 74-214 332-483 (517)
182 KOG2053 Mitochondrial inherita 97.1 0.31 6.7E-06 47.9 36.1 196 16-214 44-256 (932)
183 PF14559 TPR_19: Tetratricopep 97.1 0.0021 4.4E-08 42.4 6.1 51 57-108 4-54 (68)
184 PF04840 Vps16_C: Vps16, C-ter 97.1 0.19 4.1E-06 44.5 27.4 108 256-382 179-287 (319)
185 PF12688 TPR_5: Tetratrico pep 97.1 0.047 1E-06 40.5 13.4 105 50-160 7-117 (120)
186 PF13414 TPR_11: TPR repeat; P 97.0 0.0041 8.8E-08 41.1 7.0 60 80-140 4-64 (69)
187 KOG2280 Vacuolar assembly/sort 97.0 0.34 7.5E-06 46.6 23.3 124 18-142 442-574 (829)
188 PF13432 TPR_16: Tetratricopep 97.0 0.0037 8.1E-08 40.7 6.6 58 120-178 3-60 (65)
189 PF13281 DUF4071: Domain of un 97.0 0.25 5.4E-06 44.4 19.6 79 117-195 144-228 (374)
190 PF13414 TPR_11: TPR repeat; P 97.0 0.0055 1.2E-07 40.5 7.4 64 113-177 2-66 (69)
191 PF03704 BTAD: Bacterial trans 97.0 0.0062 1.3E-07 47.4 8.8 70 116-186 64-138 (146)
192 PRK10153 DNA-binding transcrip 97.0 0.12 2.7E-06 49.1 18.6 71 218-292 419-489 (517)
193 KOG3941 Intermediate in Toll s 97.0 0.0063 1.4E-07 51.0 8.7 99 31-129 52-173 (406)
194 PF12921 ATP13: Mitochondrial 96.9 0.0044 9.6E-08 46.4 7.1 99 218-336 1-100 (126)
195 COG4700 Uncharacterized protei 96.9 0.14 3E-06 40.5 18.5 151 86-242 63-216 (251)
196 PF12921 ATP13: Mitochondrial 96.8 0.028 6.2E-07 42.1 10.7 48 180-227 48-96 (126)
197 COG4700 Uncharacterized protei 96.8 0.17 3.8E-06 40.0 18.4 156 51-210 63-219 (251)
198 PF03704 BTAD: Bacterial trans 96.8 0.016 3.5E-07 45.0 9.7 70 81-151 64-138 (146)
199 KOG0553 TPR repeat-containing 96.8 0.12 2.6E-06 44.1 15.0 117 62-194 76-192 (304)
200 COG4235 Cytochrome c biogenesi 96.8 0.12 2.6E-06 44.2 15.0 101 111-214 153-257 (287)
201 KOG3941 Intermediate in Toll s 96.8 0.022 4.7E-07 48.0 10.2 88 253-340 66-174 (406)
202 KOG2041 WD40 repeat protein [G 96.7 0.61 1.3E-05 44.7 22.0 211 30-279 680-903 (1189)
203 PF07079 DUF1347: Protein of u 96.7 0.49 1.1E-05 43.0 29.8 362 24-394 90-531 (549)
204 KOG0553 TPR repeat-containing 96.6 0.037 8E-07 47.1 11.0 117 97-230 76-193 (304)
205 PF13525 YfiO: Outer membrane 96.6 0.3 6.6E-06 40.3 17.9 58 121-178 12-71 (203)
206 PRK10803 tol-pal system protei 96.6 0.055 1.2E-06 46.5 12.4 97 117-213 146-246 (263)
207 PRK10803 tol-pal system protei 96.6 0.042 9.1E-07 47.2 11.7 98 79-178 143-246 (263)
208 COG4235 Cytochrome c biogenesi 96.5 0.25 5.5E-06 42.3 15.3 113 76-192 153-268 (287)
209 COG3898 Uncharacterized membra 96.4 0.63 1.4E-05 41.4 28.2 295 47-356 85-396 (531)
210 PF10300 DUF3808: Protein of u 96.4 0.17 3.6E-06 47.8 15.2 115 94-211 248-374 (468)
211 PF13371 TPR_9: Tetratricopept 96.4 0.031 6.6E-07 37.3 7.6 52 89-141 5-56 (73)
212 PF13371 TPR_9: Tetratricopept 96.3 0.04 8.7E-07 36.7 7.8 54 123-177 4-57 (73)
213 PF13170 DUF4003: Protein of u 96.2 0.22 4.7E-06 43.7 14.0 130 60-191 78-224 (297)
214 KOG1130 Predicted G-alpha GTPa 96.2 0.067 1.4E-06 47.6 10.6 263 53-316 26-342 (639)
215 PF13170 DUF4003: Protein of u 96.2 0.24 5.3E-06 43.3 14.2 129 95-225 78-223 (297)
216 PF13424 TPR_12: Tetratricopep 96.1 0.024 5.3E-07 38.4 6.3 25 116-140 7-31 (78)
217 PF13525 YfiO: Outer membrane 96.1 0.63 1.4E-05 38.4 20.4 181 152-343 8-197 (203)
218 PF13424 TPR_12: Tetratricopep 96.1 0.03 6.4E-07 38.0 6.6 62 80-141 6-73 (78)
219 KOG1538 Uncharacterized conser 96.0 1.2 2.7E-05 42.3 18.0 86 221-317 749-845 (1081)
220 KOG1538 Uncharacterized conser 96.0 0.24 5.2E-06 46.8 13.3 238 21-283 564-846 (1081)
221 smart00299 CLH Clathrin heavy 95.9 0.57 1.2E-05 35.9 15.6 42 85-127 13-54 (140)
222 COG5107 RNA14 Pre-mRNA 3'-end 95.9 0.64 1.4E-05 42.2 15.0 131 79-212 397-530 (660)
223 PF07035 Mic1: Colon cancer-as 95.8 0.7 1.5E-05 36.4 15.4 53 135-191 15-67 (167)
224 COG3898 Uncharacterized membra 95.8 1.3 2.9E-05 39.5 29.7 284 25-322 96-396 (531)
225 KOG2114 Vacuolar assembly/sort 95.7 2.3 4.9E-05 41.9 19.0 71 330-403 711-786 (933)
226 PRK15331 chaperone protein Sic 95.7 0.56 1.2E-05 36.6 12.5 87 89-177 47-133 (165)
227 smart00299 CLH Clathrin heavy 95.6 0.72 1.6E-05 35.4 15.2 129 44-195 7-136 (140)
228 PF09205 DUF1955: Domain of un 95.6 0.66 1.4E-05 34.6 13.0 63 152-215 89-151 (161)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.36 7.8E-06 44.2 12.2 63 78-142 74-140 (453)
230 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.38 8.3E-06 44.0 12.2 64 43-108 74-141 (453)
231 PF04053 Coatomer_WDAD: Coatom 95.4 0.58 1.3E-05 43.6 13.7 153 25-210 273-428 (443)
232 PF04053 Coatomer_WDAD: Coatom 95.3 0.69 1.5E-05 43.1 14.0 159 52-244 269-427 (443)
233 PF10300 DUF3808: Protein of u 95.2 1.8 4E-05 40.9 16.8 164 150-316 189-374 (468)
234 KOG1920 IkappaB kinase complex 95.2 4.4 9.6E-05 41.7 23.4 31 76-107 788-820 (1265)
235 KOG1920 IkappaB kinase complex 95.2 4.6 9.9E-05 41.6 20.2 45 131-177 774-820 (1265)
236 PF13281 DUF4071: Domain of un 95.1 2.5 5.4E-05 38.2 21.5 99 147-245 139-252 (374)
237 PRK15331 chaperone protein Sic 95.0 1.3 2.9E-05 34.6 15.0 92 119-212 42-133 (165)
238 COG3118 Thioredoxin domain-con 95.0 1.5 3.3E-05 37.6 13.8 173 31-207 121-295 (304)
239 PF09205 DUF1955: Domain of un 95.0 1.1 2.3E-05 33.5 13.7 139 90-250 13-151 (161)
240 PF08631 SPO22: Meiosis protei 95.0 2.3 4.9E-05 37.2 24.6 160 56-219 5-192 (278)
241 PRK11906 transcriptional regul 94.9 3.2 6.8E-05 38.3 16.4 77 97-175 322-398 (458)
242 PF10602 RPN7: 26S proteasome 94.8 0.59 1.3E-05 37.5 10.8 63 115-177 37-101 (177)
243 COG5107 RNA14 Pre-mRNA 3'-end 94.7 3.3 7.1E-05 37.9 28.8 144 255-401 398-548 (660)
244 KOG0543 FKBP-type peptidyl-pro 94.7 0.79 1.7E-05 41.1 12.0 92 51-143 215-320 (397)
245 KOG0543 FKBP-type peptidyl-pro 94.7 0.57 1.2E-05 41.9 11.1 119 21-141 216-353 (397)
246 PF08631 SPO22: Meiosis protei 94.6 2.8 6E-05 36.6 24.8 159 24-184 4-192 (278)
247 KOG4555 TPR repeat-containing 94.6 1 2.2E-05 33.6 10.1 92 122-215 51-146 (175)
248 COG3629 DnrI DNA-binding trans 94.5 0.62 1.3E-05 40.1 10.5 77 151-228 155-236 (280)
249 PF07035 Mic1: Colon cancer-as 94.4 2 4.3E-05 33.9 15.1 137 64-214 14-150 (167)
250 KOG1585 Protein required for f 94.3 2.7 5.9E-05 35.1 14.2 115 267-381 123-251 (308)
251 KOG2280 Vacuolar assembly/sort 94.3 5.8 0.00013 38.7 27.2 157 18-177 394-574 (829)
252 KOG2041 WD40 repeat protein [G 94.1 6.2 0.00013 38.3 22.9 73 26-104 747-821 (1189)
253 PF13428 TPR_14: Tetratricopep 94.1 0.17 3.6E-06 29.8 4.7 23 85-107 7-29 (44)
254 PF13428 TPR_14: Tetratricopep 94.0 0.27 6E-06 28.8 5.5 37 116-153 3-39 (44)
255 COG1729 Uncharacterized protei 93.9 1.3 2.8E-05 37.6 11.0 27 256-282 217-243 (262)
256 PF10602 RPN7: 26S proteasome 93.8 2.9 6.3E-05 33.6 12.7 63 151-213 38-102 (177)
257 KOG4570 Uncharacterized conser 93.7 1.6 3.4E-05 37.8 11.2 50 269-318 115-164 (418)
258 COG3629 DnrI DNA-binding trans 93.6 1.1 2.4E-05 38.6 10.3 81 114-195 153-238 (280)
259 PF00637 Clathrin: Region in C 93.4 0.028 6E-07 43.5 0.6 129 259-404 12-141 (143)
260 PF13512 TPR_18: Tetratricopep 93.3 2.8 6E-05 32.0 11.4 73 123-196 19-94 (142)
261 COG1729 Uncharacterized protei 93.3 1.9 4.2E-05 36.6 11.1 98 115-213 143-244 (262)
262 KOG2610 Uncharacterized conser 93.3 3.9 8.4E-05 35.9 12.9 47 93-140 117-163 (491)
263 COG4649 Uncharacterized protei 93.2 3.4 7.4E-05 32.6 14.6 129 160-288 69-201 (221)
264 COG3118 Thioredoxin domain-con 93.0 5.5 0.00012 34.4 17.4 120 159-281 144-263 (304)
265 KOG4570 Uncharacterized conser 92.5 0.95 2.1E-05 39.1 8.3 49 59-107 115-163 (418)
266 PF02284 COX5A: Cytochrome c o 92.3 3 6.5E-05 29.5 9.2 45 133-177 29-73 (108)
267 PF13512 TPR_18: Tetratricopep 92.2 1.5 3.3E-05 33.4 8.2 57 53-109 19-77 (142)
268 cd00923 Cyt_c_Oxidase_Va Cytoc 92.1 1.3 2.9E-05 30.9 7.1 30 109-138 37-66 (103)
269 KOG2610 Uncharacterized conser 92.0 7 0.00015 34.4 12.9 188 125-315 114-312 (491)
270 KOG1941 Acetylcholine receptor 92.0 8.6 0.00019 34.3 14.1 54 261-314 213-271 (518)
271 PF00637 Clathrin: Region in C 91.9 0.13 2.7E-06 39.8 2.4 54 50-103 13-66 (143)
272 PF02284 COX5A: Cytochrome c o 91.8 3.4 7.4E-05 29.3 9.3 60 97-157 28-87 (108)
273 KOG1130 Predicted G-alpha GTPa 91.8 5.7 0.00012 36.0 12.4 260 22-281 26-342 (639)
274 PF04184 ST7: ST7 protein; In 91.6 7.9 0.00017 36.1 13.5 60 118-177 263-323 (539)
275 PF09613 HrpB1_HrpK: Bacterial 91.4 5.6 0.00012 31.0 13.3 108 232-345 23-130 (160)
276 COG4649 Uncharacterized protei 91.4 6 0.00013 31.3 13.9 133 78-213 58-196 (221)
277 KOG4555 TPR repeat-containing 91.4 4.8 0.0001 30.1 11.5 52 89-141 53-104 (175)
278 COG0457 NrfG FOG: TPR repeat [ 91.3 7.2 0.00016 32.0 29.4 201 114-317 59-264 (291)
279 PF13929 mRNA_stabil: mRNA sta 91.2 9.2 0.0002 33.1 17.4 116 129-244 143-263 (292)
280 cd00923 Cyt_c_Oxidase_Va Cytoc 90.9 0.77 1.7E-05 32.0 5.0 46 271-316 24-69 (103)
281 KOG1585 Protein required for f 90.8 9 0.0002 32.2 17.5 53 257-310 193-248 (308)
282 PF13176 TPR_7: Tetratricopept 90.7 0.67 1.4E-05 25.7 4.0 22 83-104 3-24 (36)
283 PF13176 TPR_7: Tetratricopept 90.7 0.61 1.3E-05 25.9 3.8 23 117-139 2-24 (36)
284 COG0457 NrfG FOG: TPR repeat [ 90.4 8.7 0.00019 31.5 26.1 225 57-283 36-265 (291)
285 COG4105 ComL DNA uptake lipopr 90.4 10 0.00022 32.1 22.6 59 294-352 172-232 (254)
286 PF13431 TPR_17: Tetratricopep 90.0 0.41 8.9E-06 26.2 2.7 23 111-133 10-32 (34)
287 PF11207 DUF2989: Protein of u 90.0 0.97 2.1E-05 36.6 5.7 76 335-411 118-201 (203)
288 KOG0550 Molecular chaperone (D 89.9 15 0.00033 33.4 18.0 172 157-335 177-368 (486)
289 PF13431 TPR_17: Tetratricopep 89.8 0.61 1.3E-05 25.6 3.2 28 381-408 6-33 (34)
290 KOG2114 Vacuolar assembly/sort 89.8 13 0.00027 37.1 13.7 190 186-399 336-533 (933)
291 KOG0276 Vesicle coat complex C 89.7 3.7 8.1E-05 39.0 9.9 151 24-210 597-747 (794)
292 PRK11906 transcriptional regul 89.6 18 0.00038 33.7 15.2 142 28-174 273-432 (458)
293 PF13762 MNE1: Mitochondrial s 89.2 8.4 0.00018 29.6 11.9 81 151-231 41-127 (145)
294 COG4105 ComL DNA uptake lipopr 88.2 15 0.00033 31.1 19.9 53 55-107 45-99 (254)
295 KOG1464 COP9 signalosome, subu 87.6 17 0.00036 31.1 20.0 121 255-382 192-328 (440)
296 KOG0550 Molecular chaperone (D 87.3 23 0.0005 32.3 18.2 151 22-178 178-350 (486)
297 PF11207 DUF2989: Protein of u 87.3 7.6 0.00016 31.6 9.1 79 89-169 117-198 (203)
298 PRK09687 putative lyase; Provi 87.0 20 0.00043 31.3 28.8 182 38-235 31-222 (280)
299 PF04184 ST7: ST7 protein; In 86.7 28 0.00061 32.7 17.9 57 189-245 264-321 (539)
300 KOG1464 COP9 signalosome, subu 86.4 20 0.00043 30.7 19.0 235 25-267 39-317 (440)
301 COG3947 Response regulator con 86.1 22 0.00047 30.8 15.0 40 30-69 150-191 (361)
302 PRK09687 putative lyase; Provi 85.8 23 0.0005 30.9 22.7 197 21-235 45-251 (280)
303 PF00515 TPR_1: Tetratricopept 85.7 2.3 4.9E-05 22.9 4.0 24 117-140 4-27 (34)
304 PF13374 TPR_10: Tetratricopep 85.6 2.2 4.7E-05 24.2 4.2 25 116-140 4-28 (42)
305 PF00515 TPR_1: Tetratricopept 85.3 2.9 6.2E-05 22.5 4.3 29 255-283 2-30 (34)
306 PF02259 FAT: FAT domain; Int 85.2 28 0.00061 31.3 19.1 63 255-317 147-212 (352)
307 PF13762 MNE1: Mitochondrial s 84.8 16 0.00034 28.1 11.6 79 83-161 43-127 (145)
308 PF13374 TPR_10: Tetratricopep 84.6 2.8 6E-05 23.7 4.3 29 79-107 2-30 (42)
309 PF13929 mRNA_stabil: mRNA sta 84.4 26 0.00057 30.4 20.7 117 163-279 142-263 (292)
310 PF07163 Pex26: Pex26 protein; 84.0 17 0.00038 31.2 10.0 88 155-242 89-181 (309)
311 COG4455 ImpE Protein of avirul 84.0 10 0.00022 31.3 8.3 52 86-138 8-59 (273)
312 PF09613 HrpB1_HrpK: Bacterial 83.8 19 0.00041 28.2 13.8 50 125-178 21-73 (160)
313 TIGR02561 HrpB1_HrpK type III 83.6 18 0.00039 27.9 11.7 50 232-283 23-73 (153)
314 PF07163 Pex26: Pex26 protein; 83.1 16 0.00035 31.4 9.4 91 187-277 86-181 (309)
315 PF07719 TPR_2: Tetratricopept 82.6 4.3 9.3E-05 21.6 4.3 27 256-282 3-29 (34)
316 PF04097 Nic96: Nup93/Nic96; 82.2 55 0.0012 32.4 15.6 213 119-351 116-354 (613)
317 PHA02875 ankyrin repeat protei 81.6 45 0.00098 31.0 14.3 63 72-138 23-89 (413)
318 COG4455 ImpE Protein of avirul 81.0 13 0.00029 30.7 7.9 75 222-297 4-80 (273)
319 PRK15180 Vi polysaccharide bio 80.8 14 0.00031 34.3 8.9 117 125-245 300-417 (831)
320 PF07719 TPR_2: Tetratricopept 79.7 6 0.00013 21.0 4.3 16 89-104 11-26 (34)
321 PF07575 Nucleopor_Nup85: Nup8 79.2 67 0.0015 31.5 14.8 59 256-316 407-465 (566)
322 KOG4077 Cytochrome c oxidase, 78.9 6.1 0.00013 29.3 4.9 59 307-365 67-125 (149)
323 KOG0276 Vesicle coat complex C 78.7 26 0.00056 33.7 10.0 147 127-314 599-746 (794)
324 KOG4077 Cytochrome c oxidase, 78.5 17 0.00037 27.0 7.0 40 102-141 72-111 (149)
325 PF04097 Nic96: Nup93/Nic96; 78.0 76 0.0016 31.5 22.2 44 48-92 115-158 (613)
326 PF13181 TPR_8: Tetratricopept 77.9 6.7 0.00015 20.9 4.1 26 116-141 3-28 (34)
327 PF07721 TPR_4: Tetratricopept 77.8 3.7 8E-05 20.7 2.7 15 122-136 9-23 (26)
328 PF13174 TPR_6: Tetratricopept 77.7 3.6 7.8E-05 21.7 2.9 23 261-283 7-29 (33)
329 TIGR02508 type_III_yscG type I 76.3 16 0.00034 26.0 6.1 86 269-361 20-105 (115)
330 TIGR03504 FimV_Cterm FimV C-te 76.1 7 0.00015 22.9 3.8 25 190-214 5-29 (44)
331 PF02259 FAT: FAT domain; Int 75.2 63 0.0014 29.1 20.1 61 184-244 146-209 (352)
332 COG2909 MalT ATP-dependent tra 74.6 1E+02 0.0023 31.3 25.4 225 125-349 426-684 (894)
333 KOG1258 mRNA processing protei 74.4 85 0.0018 30.3 26.9 133 43-178 44-180 (577)
334 KOG1941 Acetylcholine receptor 74.4 67 0.0014 29.0 16.8 221 24-244 17-271 (518)
335 PF11848 DUF3368: Domain of un 74.2 12 0.00027 22.3 4.7 27 128-154 16-42 (48)
336 KOG1258 mRNA processing protei 74.1 87 0.0019 30.2 29.4 375 18-403 50-490 (577)
337 PF11848 DUF3368: Domain of un 73.8 13 0.00028 22.3 4.8 32 301-332 14-45 (48)
338 PHA02875 ankyrin repeat protei 73.6 78 0.0017 29.4 12.8 199 24-243 10-223 (413)
339 COG1747 Uncharacterized N-term 73.0 87 0.0019 29.7 20.3 178 43-228 65-248 (711)
340 PF13181 TPR_8: Tetratricopept 72.4 12 0.00027 19.8 4.2 29 80-108 2-30 (34)
341 TIGR03504 FimV_Cterm FimV C-te 71.9 11 0.00023 22.2 3.9 23 120-142 5-27 (44)
342 PRK10564 maltose regulon perip 71.6 11 0.00025 32.7 5.6 44 75-118 252-296 (303)
343 PRK15180 Vi polysaccharide bio 71.3 81 0.0017 29.6 11.0 85 125-211 334-418 (831)
344 KOG1550 Extracellular protein 70.8 1.1E+02 0.0024 29.9 19.5 181 130-319 228-427 (552)
345 KOG1550 Extracellular protein 70.5 1.1E+02 0.0024 29.9 25.3 181 29-216 228-429 (552)
346 PF10579 Rapsyn_N: Rapsyn N-te 70.1 18 0.0004 24.3 5.1 44 161-204 18-63 (80)
347 KOG1586 Protein required for f 70.0 66 0.0014 27.1 14.5 25 193-217 163-187 (288)
348 PF11838 ERAP1_C: ERAP1-like C 69.8 81 0.0018 28.0 18.5 62 148-212 168-229 (324)
349 PF06552 TOM20_plant: Plant sp 69.4 29 0.00063 27.8 6.9 77 47-125 31-124 (186)
350 smart00638 LPD_N Lipoprotein N 69.3 1.2E+02 0.0026 29.8 27.7 181 43-230 309-505 (574)
351 KOG2066 Vacuolar assembly/sort 69.0 1.3E+02 0.0029 30.2 25.3 102 51-161 363-467 (846)
352 COG0735 Fur Fe2+/Zn2+ uptake r 68.9 32 0.00069 26.6 7.2 63 170-233 7-69 (145)
353 KOG1586 Protein required for f 68.9 70 0.0015 27.0 13.3 16 268-283 168-183 (288)
354 PF10579 Rapsyn_N: Rapsyn N-te 67.7 22 0.00048 23.9 5.1 44 126-170 18-64 (80)
355 COG3947 Response regulator con 67.7 85 0.0018 27.5 17.5 40 166-207 150-189 (361)
356 PRK13342 recombination factor 67.4 1.1E+02 0.0024 28.6 18.4 35 163-197 244-278 (413)
357 PF11846 DUF3366: Domain of un 66.1 34 0.00073 27.9 7.3 32 146-177 141-172 (193)
358 COG0735 Fur Fe2+/Zn2+ uptake r 64.9 46 0.00099 25.7 7.3 48 138-186 10-57 (145)
359 PF02847 MA3: MA3 domain; Int 64.7 51 0.0011 23.8 8.2 24 225-248 8-31 (113)
360 PHA03100 ankyrin repeat protei 63.9 1.3E+02 0.0028 28.6 11.9 6 72-77 56-61 (480)
361 TIGR02561 HrpB1_HrpK type III 63.9 67 0.0014 24.9 12.3 48 127-178 23-73 (153)
362 COG2976 Uncharacterized protei 63.9 80 0.0017 25.8 13.9 88 192-284 97-189 (207)
363 TIGR02508 type_III_yscG type I 63.7 51 0.0011 23.5 8.4 76 60-144 21-98 (115)
364 KOG4648 Uncharacterized conser 63.6 24 0.00052 31.3 6.0 86 52-140 105-191 (536)
365 PRK12356 glutaminase; Reviewed 63.3 95 0.0021 27.6 9.6 163 72-250 91-262 (319)
366 PF11663 Toxin_YhaV: Toxin wit 63.1 10 0.00022 28.5 3.2 29 303-333 109-137 (140)
367 KOG2582 COP9 signalosome, subu 62.3 1.2E+02 0.0026 27.4 13.4 143 76-230 72-226 (422)
368 cd00280 TRFH Telomeric Repeat 61.9 72 0.0016 25.7 7.8 41 155-198 117-157 (200)
369 PF11846 DUF3366: Domain of un 61.9 51 0.0011 26.8 7.6 61 82-142 111-172 (193)
370 PF13934 ELYS: Nuclear pore co 60.7 1E+02 0.0022 26.0 10.2 20 190-209 114-133 (226)
371 PF14689 SPOB_a: Sensor_kinase 60.7 30 0.00065 22.1 4.7 22 294-315 28-49 (62)
372 PRK13342 recombination factor 60.3 1.5E+02 0.0032 27.7 17.6 160 166-344 154-325 (413)
373 COG2976 Uncharacterized protei 60.3 93 0.002 25.4 14.4 92 226-319 96-189 (207)
374 KOG0890 Protein kinase of the 60.2 3.3E+02 0.0071 31.6 24.3 59 289-350 1670-1728(2382)
375 PF11663 Toxin_YhaV: Toxin wit 60.1 11 0.00024 28.3 3.0 31 161-193 107-137 (140)
376 PF10475 DUF2450: Protein of u 59.8 1.2E+02 0.0027 26.6 11.6 109 85-204 104-217 (291)
377 KOG3807 Predicted membrane pro 59.7 98 0.0021 27.6 8.9 107 57-177 229-339 (556)
378 KOG2063 Vacuolar assembly/sort 59.7 2.2E+02 0.0048 29.5 18.4 38 194-231 601-638 (877)
379 KOG2297 Predicted translation 59.6 1.3E+02 0.0027 26.6 10.8 151 61-238 184-340 (412)
380 PF09477 Type_III_YscG: Bacter 59.4 65 0.0014 23.3 9.0 79 199-284 21-99 (116)
381 KOG2396 HAT (Half-A-TPR) repea 59.2 1.6E+02 0.0036 27.9 30.8 90 321-410 456-554 (568)
382 PF10366 Vps39_1: Vacuolar sor 59.1 67 0.0014 23.3 7.8 27 151-177 41-67 (108)
383 PRK10564 maltose regulon perip 58.0 21 0.00045 31.2 4.7 39 46-84 259-297 (303)
384 PF10345 Cohesin_load: Cohesin 57.8 2E+02 0.0044 28.5 33.2 192 43-244 29-250 (608)
385 PRK11619 lytic murein transgly 57.7 2.1E+02 0.0046 28.6 27.9 75 85-165 105-179 (644)
386 KOG2297 Predicted translation 57.2 1.4E+02 0.003 26.4 15.8 17 325-341 322-338 (412)
387 cd00280 TRFH Telomeric Repeat 56.5 88 0.0019 25.3 7.4 48 60-107 85-139 (200)
388 PF14689 SPOB_a: Sensor_kinase 56.1 19 0.00041 23.0 3.3 25 258-282 27-51 (62)
389 smart00028 TPR Tetratricopepti 55.4 21 0.00045 17.6 3.1 25 152-176 4-28 (34)
390 COG5159 RPN6 26S proteasome re 55.0 1.5E+02 0.0032 26.0 12.2 141 190-330 9-170 (421)
391 PF09454 Vps23_core: Vps23 cor 54.4 28 0.00061 22.5 3.8 51 286-337 5-55 (65)
392 KOG4567 GTPase-activating prot 54.4 84 0.0018 27.7 7.6 58 274-336 263-320 (370)
393 cd08819 CARD_MDA5_2 Caspase ac 54.1 71 0.0015 22.1 7.1 34 233-271 50-83 (88)
394 COG2137 OraA Uncharacterized p 53.7 1.1E+02 0.0025 24.4 12.7 109 98-210 54-164 (174)
395 PF10475 DUF2450: Protein of u 53.7 1.6E+02 0.0034 26.0 11.0 114 118-242 102-220 (291)
396 KOG2063 Vacuolar assembly/sort 53.6 2.8E+02 0.006 28.8 17.9 116 46-161 506-638 (877)
397 KOG4234 TPR repeat-containing 53.5 1.3E+02 0.0028 24.8 8.8 91 52-144 103-198 (271)
398 PRK09462 fur ferric uptake reg 52.9 1E+02 0.0022 23.7 7.6 35 94-128 32-66 (148)
399 PF07575 Nucleopor_Nup85: Nup8 52.5 69 0.0015 31.4 8.0 59 78-138 404-462 (566)
400 PF03745 DUF309: Domain of unk 52.4 60 0.0013 20.7 5.4 16 161-176 11-26 (62)
401 cd07153 Fur_like Ferric uptake 52.2 48 0.001 24.2 5.4 47 50-96 6-52 (116)
402 PRK11639 zinc uptake transcrip 52.2 1E+02 0.0023 24.5 7.6 36 93-128 39-74 (169)
403 KOG2034 Vacuolar sorting prote 51.9 2.9E+02 0.0062 28.4 22.7 51 20-70 365-415 (911)
404 PF08311 Mad3_BUB1_I: Mad3/BUB 51.0 1E+02 0.0022 23.1 9.1 42 132-173 81-123 (126)
405 KOG4507 Uncharacterized conser 50.7 1.3E+02 0.0029 29.2 8.8 132 61-195 590-721 (886)
406 PF09454 Vps23_core: Vps23 cor 50.7 30 0.00065 22.4 3.5 48 112-160 6-53 (65)
407 KOG0686 COP9 signalosome, subu 50.6 2.1E+02 0.0045 26.5 15.2 65 114-178 150-216 (466)
408 PRK11639 zinc uptake transcrip 50.4 89 0.0019 24.9 7.0 68 30-97 11-78 (169)
409 PF12926 MOZART2: Mitotic-spin 50.4 82 0.0018 21.7 8.0 41 135-175 29-69 (88)
410 KOG4567 GTPase-activating prot 50.3 1.8E+02 0.0039 25.7 10.1 43 205-247 264-306 (370)
411 smart00638 LPD_N Lipoprotein N 49.8 2.6E+02 0.0057 27.4 26.7 107 112-224 308-416 (574)
412 KOG0890 Protein kinase of the 48.9 5E+02 0.011 30.3 20.9 149 50-208 1389-1542(2382)
413 KOG2422 Uncharacterized conser 48.8 2.6E+02 0.0057 27.1 14.9 119 23-141 248-405 (665)
414 COG4785 NlpI Lipoprotein NlpI, 48.8 1.6E+02 0.0035 24.6 17.3 179 93-283 79-266 (297)
415 PF11123 DNA_Packaging_2: DNA 48.5 67 0.0014 21.3 4.7 33 129-162 12-44 (82)
416 COG2909 MalT ATP-dependent tra 48.4 3.3E+02 0.0071 28.1 26.5 316 61-382 298-684 (894)
417 COG5108 RPO41 Mitochondrial DN 48.3 1.5E+02 0.0033 29.3 8.9 91 84-177 33-131 (1117)
418 PRK09462 fur ferric uptake reg 47.9 1.2E+02 0.0026 23.4 7.3 60 174-234 7-67 (148)
419 PRK09857 putative transposase; 47.8 2E+02 0.0043 25.4 9.4 66 117-183 209-274 (292)
420 PF06552 TOM20_plant: Plant sp 47.4 1.5E+02 0.0032 23.9 10.7 43 165-215 96-138 (186)
421 PF01475 FUR: Ferric uptake re 46.7 45 0.00098 24.6 4.6 45 49-93 12-56 (120)
422 PRK09857 putative transposase; 46.4 1.8E+02 0.004 25.6 8.9 66 152-218 209-274 (292)
423 cd08819 CARD_MDA5_2 Caspase ac 46.1 99 0.0021 21.4 7.3 14 128-141 50-63 (88)
424 PF09670 Cas_Cas02710: CRISPR- 45.1 2.5E+02 0.0055 25.9 11.5 50 161-211 143-196 (379)
425 PF11817 Foie-gras_1: Foie gra 45.1 1.1E+02 0.0024 26.2 7.2 22 259-280 183-204 (247)
426 PRK13800 putative oxidoreducta 44.9 4E+02 0.0086 28.1 23.9 257 31-317 622-880 (897)
427 KOG0991 Replication factor C, 44.5 2E+02 0.0043 24.5 12.3 35 147-182 237-271 (333)
428 COG4785 NlpI Lipoprotein NlpI, 44.4 1.9E+02 0.0041 24.2 15.5 31 79-109 99-129 (297)
429 PF08424 NRDE-2: NRDE-2, neces 44.0 2.4E+02 0.0052 25.3 17.6 29 257-285 157-185 (321)
430 COG5108 RPO41 Mitochondrial DN 44.0 2.1E+02 0.0046 28.4 9.1 90 49-141 33-130 (1117)
431 TIGR03814 Gln_ase glutaminase 43.8 2.3E+02 0.005 25.0 10.0 156 72-249 79-250 (300)
432 smart00386 HAT HAT (Half-A-TPR 43.7 46 0.001 16.9 3.9 13 129-141 2-14 (33)
433 KOG2066 Vacuolar assembly/sort 43.1 3.7E+02 0.0081 27.3 19.6 102 86-196 363-467 (846)
434 KOG4648 Uncharacterized conser 43.1 1.8E+02 0.0039 26.2 8.0 93 87-183 105-197 (536)
435 PF04190 DUF410: Protein of un 42.1 2.3E+02 0.0049 24.5 18.0 102 25-137 2-113 (260)
436 PF11817 Foie-gras_1: Foie gra 42.1 1.7E+02 0.0037 25.0 7.9 61 151-211 180-245 (247)
437 PF03745 DUF309: Domain of unk 41.2 94 0.002 19.8 5.0 46 56-101 11-61 (62)
438 KOG4234 TPR repeat-containing 40.9 2.1E+02 0.0045 23.7 9.4 88 123-213 104-197 (271)
439 TIGR03581 EF_0839 conserved hy 40.0 1.2E+02 0.0025 25.2 6.0 34 235-268 137-177 (236)
440 KOG2659 LisH motif-containing 39.9 2.3E+02 0.0049 23.8 7.8 19 262-280 72-90 (228)
441 KOG3807 Predicted membrane pro 39.6 2.8E+02 0.0061 24.8 8.9 148 49-214 189-341 (556)
442 PF07678 A2M_comp: A-macroglob 39.5 1.9E+02 0.0041 24.6 7.8 23 295-317 198-220 (246)
443 PF09868 DUF2095: Uncharacteri 39.3 1.2E+02 0.0026 22.1 5.3 21 89-109 71-91 (128)
444 PRK11619 lytic murein transgly 39.3 4.1E+02 0.0089 26.7 26.9 137 55-201 44-180 (644)
445 cd07153 Fur_like Ferric uptake 39.1 82 0.0018 22.9 4.9 47 295-341 6-52 (116)
446 PF12796 Ank_2: Ankyrin repeat 39.1 43 0.00094 22.7 3.3 11 27-37 8-18 (89)
447 PF09477 Type_III_YscG: Bacter 38.4 1.5E+02 0.0033 21.5 8.9 79 59-144 21-99 (116)
448 KOG4507 Uncharacterized conser 38.3 2.9E+02 0.0062 27.1 9.0 152 76-230 568-721 (886)
449 smart00544 MA3 Domain in DAP-5 38.1 1.5E+02 0.0033 21.3 10.9 59 224-284 7-67 (113)
450 PF13934 ELYS: Nuclear pore co 37.9 2.5E+02 0.0053 23.7 11.3 21 120-140 114-134 (226)
451 KOG2062 26S proteasome regulat 37.6 4.5E+02 0.0098 26.6 11.0 201 60-264 39-253 (929)
452 KOG0687 26S proteasome regulat 37.0 3.1E+02 0.0068 24.6 16.2 134 75-212 66-209 (393)
453 PF04762 IKI3: IKI3 family; I 36.8 5.4E+02 0.012 27.3 17.6 29 185-213 813-843 (928)
454 PF09868 DUF2095: Uncharacteri 36.8 1.4E+02 0.0031 21.7 5.4 35 120-155 67-101 (128)
455 PF10345 Cohesin_load: Cohesin 36.5 4.4E+02 0.0096 26.2 35.3 168 43-211 58-252 (608)
456 PF12926 MOZART2: Mitotic-spin 36.3 1.5E+02 0.0031 20.5 7.9 42 100-141 29-70 (88)
457 COG2178 Predicted RNA-binding 35.7 2.5E+02 0.0053 23.0 10.7 62 117-178 32-98 (204)
458 PF01475 FUR: Ferric uptake re 35.6 76 0.0016 23.3 4.3 49 294-342 12-60 (120)
459 PF08424 NRDE-2: NRDE-2, neces 35.1 3.3E+02 0.0072 24.3 18.2 118 96-215 48-185 (321)
460 PF14669 Asp_Glu_race_2: Putat 34.8 2.6E+02 0.0055 23.0 14.4 55 259-313 137-205 (233)
461 KOG0403 Neoplastic transformat 34.7 4E+02 0.0086 25.1 17.9 54 294-350 514-569 (645)
462 COG0790 FOG: TPR repeat, SEL1 34.6 3.1E+02 0.0067 23.9 22.5 152 23-180 51-222 (292)
463 KOG0403 Neoplastic transformat 34.3 4E+02 0.0088 25.1 15.5 75 257-336 512-586 (645)
464 PF10366 Vps39_1: Vacuolar sor 33.9 1.8E+02 0.004 21.0 8.0 27 116-142 41-67 (108)
465 PLN03192 Voltage-dependent pot 33.5 4.4E+02 0.0096 27.4 10.6 18 226-243 626-643 (823)
466 COG5187 RPN7 26S proteasome re 33.3 3.4E+02 0.0073 23.9 13.8 165 201-367 55-236 (412)
467 PF10155 DUF2363: Uncharacteri 33.2 2.1E+02 0.0046 21.5 13.4 110 28-140 4-124 (126)
468 PF15297 CKAP2_C: Cytoskeleton 33.0 3.7E+02 0.0081 24.3 9.6 65 269-335 118-186 (353)
469 PF02847 MA3: MA3 domain; Int 33.0 1.9E+02 0.004 20.8 7.9 21 120-140 8-28 (113)
470 KOG3636 Uncharacterized conser 32.6 4.2E+02 0.0092 24.8 13.4 197 204-401 39-273 (669)
471 PRK10941 hypothetical protein; 32.6 3.4E+02 0.0073 23.6 9.1 79 116-195 183-262 (269)
472 KOG0991 Replication factor C, 32.3 3.2E+02 0.0069 23.3 10.4 103 264-370 169-284 (333)
473 PF12862 Apc5: Anaphase-promot 32.1 1.8E+02 0.0038 20.3 6.5 17 124-140 51-67 (94)
474 KOG2396 HAT (Half-A-TPR) repea 31.3 4.8E+02 0.01 25.0 24.8 91 256-350 462-556 (568)
475 COG4003 Uncharacterized protei 31.2 1.7E+02 0.0037 19.9 4.9 29 121-150 38-66 (98)
476 PF12862 Apc5: Anaphase-promot 31.2 1.8E+02 0.004 20.2 6.6 22 191-212 48-69 (94)
477 PF14853 Fis1_TPR_C: Fis1 C-te 31.2 1.3E+02 0.0028 18.5 5.0 31 260-292 7-37 (53)
478 cd08326 CARD_CASP9 Caspase act 30.9 1.8E+02 0.0039 20.0 7.5 34 93-130 44-77 (84)
479 PF12069 DUF3549: Protein of u 30.3 4.1E+02 0.009 24.0 11.1 163 26-198 145-312 (340)
480 PRK14958 DNA polymerase III su 29.6 5.3E+02 0.011 25.0 12.1 75 106-183 192-279 (509)
481 smart00777 Mad3_BUB1_I Mad3/BU 29.4 2.5E+02 0.0053 21.1 9.0 41 133-173 82-123 (125)
482 cd08790 DED_DEDD Death Effecto 29.4 84 0.0018 22.2 3.2 57 91-149 36-92 (97)
483 PRK14962 DNA polymerase III su 28.7 5.3E+02 0.011 24.7 15.1 81 108-191 192-285 (472)
484 PF04910 Tcf25: Transcriptiona 28.6 4.6E+02 0.01 24.0 18.5 54 262-315 111-165 (360)
485 KOG2659 LisH motif-containing 28.5 3.6E+02 0.0078 22.7 10.9 21 191-211 71-91 (228)
486 COG0292 RplT Ribosomal protein 28.0 1.5E+02 0.0032 21.6 4.2 42 356-397 71-112 (118)
487 PF00244 14-3-3: 14-3-3 protei 27.6 3.8E+02 0.0083 22.7 9.9 163 120-282 7-197 (236)
488 COG3107 LppC Putative lipoprot 27.5 4.8E+02 0.01 25.2 8.5 102 32-134 47-156 (604)
489 PF02184 HAT: HAT (Half-A-TPR) 27.4 1.1E+02 0.0023 16.6 2.7 21 270-292 3-23 (32)
490 COG2405 Predicted nucleic acid 27.2 1.3E+02 0.0028 23.0 4.0 41 291-332 112-152 (157)
491 cd08780 Death_TRADD Death Doma 27.2 2.2E+02 0.0047 19.8 7.0 55 255-312 33-88 (90)
492 cd08812 CARD_RIG-I_like Caspas 26.9 1.1E+02 0.0025 21.1 3.6 47 48-98 38-85 (88)
493 PF11838 ERAP1_C: ERAP1-like C 26.7 4.5E+02 0.0097 23.2 23.7 29 255-283 202-230 (324)
494 PF05944 Phage_term_smal: Phag 26.7 2.7E+02 0.0058 21.1 5.8 31 186-216 50-80 (132)
495 PF02607 B12-binding_2: B12 bi 26.6 1.1E+02 0.0024 20.3 3.5 38 161-198 13-50 (79)
496 PF06957 COPI_C: Coatomer (COP 26.4 2.8E+02 0.006 26.0 6.9 20 155-174 124-143 (422)
497 COG1466 HolA DNA polymerase II 26.3 4.8E+02 0.01 23.5 9.1 78 138-217 151-241 (334)
498 KOG0686 COP9 signalosome, subu 26.0 5.4E+02 0.012 23.9 16.4 159 151-317 152-332 (466)
499 KOG4521 Nuclear pore complex, 25.7 8.8E+02 0.019 26.3 13.5 125 255-382 984-1127(1480)
500 PF05944 Phage_term_smal: Phag 25.7 3E+02 0.0065 20.9 7.2 26 119-144 53-78 (132)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-64 Score=499.08 Aligned_cols=383 Identities=14% Similarity=0.109 Sum_probs=348.7
Q ss_pred cccccccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh
Q 040580 16 RFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95 (412)
Q Consensus 16 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 95 (412)
+..++..|.+.|.+++|..+|+.|..||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 409 ~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~v 488 (1060)
T PLN03218 409 HAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCH
Confidence 34566667777888888888888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175 (412)
Q Consensus 96 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 175 (412)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.++.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 489 d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcc
Q 040580 176 VS--RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253 (412)
Q Consensus 176 ~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 253 (412)
.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...+..||
T Consensus 569 ~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 76 6789999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 040580 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333 (412)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 333 (412)
..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc----CchHHHHHHHHHH
Q 040580 334 YLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR----QRKWTYRKLIAVY 398 (412)
Q Consensus 334 ~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~----~~~~~~~~l~~~~ 398 (412)
|++.|++++|.+++++| ..+..||..||+.++.+|++ |+.++|.+++.+|.. ||..+|++++..|
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999 77889999999999999988 999999999999876 8889999988653
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-64 Score=494.62 Aligned_cols=390 Identities=13% Similarity=0.105 Sum_probs=375.8
Q ss_pred hccccccccccCCCChHHHHHHHHHhhccCh-----hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 040580 14 FKRFNVPSHQTHPKNGDLARKIIRYRKQEGF-----VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC 88 (412)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (412)
+.+..++..+++.|++++|.++|++|++++. ..++.++..|.+.|.+++|..+|+.|.. ||..+|+.+|.+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 5577888888899999999999999998654 4566778889999999999999999974 999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 168 (412)
|++.|+++.|.++|+.|.+.|+.||..+|++||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHh
Q 040580 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR--SRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVG 246 (412)
Q Consensus 169 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 246 (412)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhh
Q 040580 247 LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326 (412)
Q Consensus 247 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 326 (412)
..+..++..+||.+|.+|++.|++++|..+|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc----CchHHHHHHHHHHHH
Q 040580 327 YGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR----QRKWTYRKLIAVYLK 400 (412)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~ 400 (412)
|++||.+|++.|++++|.++|++| ..+..||..+|+.||.+|++ |+.++|.++|.+|.. ||..+|++++++|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999 77899999999999999999 999999999999975 899999999999999
Q ss_pred cCccccc
Q 040580 401 KQLRRNQ 407 (412)
Q Consensus 401 ~g~~~~a 407 (412)
.|+.++|
T Consensus 767 ~G~le~A 773 (1060)
T PLN03218 767 KDDADVG 773 (1060)
T ss_pred CCCHHHH
Confidence 9999988
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-62 Score=478.95 Aligned_cols=385 Identities=16% Similarity=0.146 Sum_probs=368.8
Q ss_pred hhccccccccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 040580 13 KFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92 (412)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 92 (412)
...++.++.+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 040580 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 172 (412)
|+.+.+.+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.. ++..+||++|.+|++.|++++|+++|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999964 46689999999999999999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCc
Q 040580 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252 (412)
Q Consensus 173 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 252 (412)
++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.. +
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999854 3
Q ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHh-CCCCCCHhhHHHHH
Q 040580 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH-ESVGPDLVTYGCVV 331 (412)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li 331 (412)
|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 66999999999999999999999999999999999999999999999999999999999999976 79999999999999
Q ss_pred HHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc---CchHHHHHHHHHHHHcCccccc
Q 040580 332 DAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR---QRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 407 (412)
++|++.|+.++|.+++++|. ..|+..+|+.|+.+|+. |+.+.|.++++++.. .+..+|..|+++|++.|++++|
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 99999999999999999884 67899999999999988 999999888887654 5678999999999999999998
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-60 Score=476.53 Aligned_cols=385 Identities=14% Similarity=0.078 Sum_probs=335.0
Q ss_pred hccccccccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 040580 14 FKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93 (412)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (412)
..++.++.+|++.|++++|.++|++|+++|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 040580 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173 (412)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 173 (412)
+++.+.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|. .|+..+||++|.+|++.|++++|+++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996 4667899999999999999999999999
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcc
Q 040580 174 EMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253 (412)
Q Consensus 174 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 253 (412)
+|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++||.+|++.|++++|.++|++|.. +|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 454 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KD 454 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999854 24
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhH------------------------------------------
Q 040580 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT------------------------------------------ 291 (412)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------------------------------------ 291 (412)
..+||++|.+|++.|+.++|+.+|++|.. ++.||..|
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 58999999999999999999999999975 46666554
Q ss_pred -----------------------HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHH
Q 040580 292 -----------------------FNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348 (412)
Q Consensus 292 -----------------------~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 348 (412)
||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.++++.++|+
T Consensus 534 y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 455555666666666777777777777777777777777777777777777777777
Q ss_pred hc--cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhc-cCchHHHHHHHHHHHHcCccccc
Q 040580 349 KM--NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFK-RQRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 349 ~m--~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a 407 (412)
.| ..+..|+..+|++++++|++ |+.++|.+++++|. +||..+|++|+++|...|+.+.+
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Confidence 77 24666777777777777766 77777777777763 36677777777777666666544
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.9e-60 Score=472.24 Aligned_cols=382 Identities=12% Similarity=0.023 Sum_probs=362.8
Q ss_pred ccccccccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 040580 15 KRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94 (412)
Q Consensus 15 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 94 (412)
.++.++..|++.|+++.|.++|++|+++|..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 040580 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKE 174 (412)
Q Consensus 95 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 174 (412)
++.+.+++..|.+.|+.||..+||+|+.+|++.|+++.|.++|++|.. +|..+||++|.+|++.|++++|+++|++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999964 5668999999999999999999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcch
Q 040580 175 MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254 (412)
Q Consensus 175 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 254 (412)
|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999853 356
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 334 (412)
.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|++||++|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc---CchHHHHHHHHHHHHcCccccc
Q 040580 335 LDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR---QRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 407 (412)
++.|++++|.++|++|. .||..+|+.+|.+|++ |+.++|.++|.+|.. ||..+|++++.+|++.|..+.+
T Consensus 435 ~k~g~~~~A~~vf~~m~---~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 435 SKCKCIDKALEVFHNIP---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHcCCHHHHHHHHHhCC---CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHh
Confidence 99999999999999994 3688899999999988 999999999999874 8888888777766666655544
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-58 Score=450.97 Aligned_cols=382 Identities=15% Similarity=0.100 Sum_probs=340.9
Q ss_pred hccccccccccCCCChHHHHHHHHHhhc-----cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 040580 14 FKRFNVPSHQTHPKNGDLARKIIRYRKQ-----EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC 88 (412)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (412)
.+++.++..|.+.|++++|.++|++|.. +|..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|+.+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 5678888888888888888888888853 47788888888888888888888888888888888888888888888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC--------------------
Q 040580 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL-------------------- 148 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-------------------- 148 (412)
|++.|+++.|.++|++|. .||..+||+++.+|++.|++++|.++|++|.+.|+.|+
T Consensus 168 y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 888888888888888885 47888888888888888888888888888876665554
Q ss_pred ---------------HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040580 149 ---------------PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 149 ---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
..+||+||.+|++.|++++|.++|++|.. +|..+|+++|.+|++.|+.++|.++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 44567788888899999999999998864 58899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHH
Q 040580 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN 293 (412)
Q Consensus 214 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 293 (412)
|+.||..||+.++.+|++.|++++|.+++..|...+..+|..+||+||.+|++.|++++|.++|++|. .||..|||
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHH
Confidence 99999999999999999999999999999999888888889999999999999999999999999997 58999999
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc-c-CCCCCCcccHHHHHHHHhc-
Q 040580 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-N-LDDSPVVSTDPYVFEAFGK- 370 (412)
Q Consensus 294 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~-~~~~p~~~~~~~li~~~~~- 370 (412)
+||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|..+++.++|+.| + .+..|+..+|++++++|++
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999 3 5899999999999999999
Q ss_pred CCcccHHHHHHHhcc-CchHHHHHHHHHHHHcCccccc
Q 040580 371 GDFHSSSEAFLEFKR-QRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 371 ~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 407 (412)
|+.++|.+++.+|.. |+..+|++|+++|...|+.+.|
T Consensus 476 G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999854 8999999999999999998877
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=8.8e-25 Score=222.78 Aligned_cols=376 Identities=10% Similarity=-0.044 Sum_probs=209.3
Q ss_pred ccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHH
Q 040580 21 SHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLE 97 (412)
Q Consensus 21 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 97 (412)
..+...|++++|...++.+.. .+..++..+...+.+.|+.++|..+|+++.+.+ +.+...+..+...+.+.|++++
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHH
Confidence 333344444444444444322 133344444444444444444444444444332 2233444444555555555555
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 98 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
|..+++.+.+.. +.+..+|..+..++.+.|++++|...|+++.+.+ +.++..+..+...+.+.|++++|..+|+++.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555554432 3444555555555555555555555555554433 33344555555555555555555555555554
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHH
Q 040580 178 RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW 257 (412)
Q Consensus 178 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 257 (412)
... .+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.++.+....++. .++
T Consensus 664 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~ 739 (899)
T TIGR02917 664 LKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNA 739 (899)
T ss_pred cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHH
Confidence 321 134455555555555556666665555555543 3345555556666666666666666666654444332 455
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 040580 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337 (412)
Q Consensus 258 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 337 (412)
..+...+.+.|++++|...++++.+.. +.+...+..+...|...|+.++|...|+++.+.. +++...++.+...+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 556666666666666666666666542 3345566666667777777777777777776543 23566667777777777
Q ss_pred cccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc---CchHHHHHHHHHHHHcCccccc
Q 040580 338 RLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR---QRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 338 ~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 407 (412)
|+ .+|.+.+++. ...+ -+...+..+...+.. |++++|.+.+.++.. .++.++..++.+|.+.|+.++|
T Consensus 818 ~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred Cc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 77 5677777666 3221 122233344444544 888888888877654 4678888888888888888887
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2.5e-24 Score=219.45 Aligned_cols=378 Identities=11% Similarity=-0.034 Sum_probs=174.6
Q ss_pred ccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHH
Q 040580 21 SHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLE 97 (412)
Q Consensus 21 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 97 (412)
..+.+.|++++|..+++.+.. .+..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 344445555555555544432 133445555555555555555555555554432 2233334444444455555555
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 98 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
|...|+.+.+.+ +.+..++..+...+.+.|+.++|...++++...+ +.+...+..+...+.+.|++++|..+++++.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555544432 3344444444444444444444444444443332 22233444444444444444444444444433
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------------------------------CCCHHHHHH
Q 040580 178 RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH---------------------------------LIDKEGIRA 224 (412)
Q Consensus 178 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~ 224 (412)
.. +.+...|..+..++.+.|++++|...|+.+.+... +.+..++..
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 21 12333444444444444444444444444443220 123344444
Q ss_pred HHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCC
Q 040580 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304 (412)
Q Consensus 225 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 304 (412)
+...+...|++++|.++++.+....+. +...+..+...+...|++++|...|+++.+. .|+..++..+..++.+.|+
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCC
Confidence 444444444444444444444333222 2244444445555555555555555555443 2333444445555555555
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHh
Q 040580 305 FWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEF 383 (412)
Q Consensus 305 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~ 383 (412)
+++|.+.+..+.+.. +.+...+..+...|...|+.++|.+.++++....+++...++.+...+.+ |+ .+|.+.+.+.
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 555555555544432 22444555555555555555555555555522122333444444444444 44 4455555543
Q ss_pred c---cCchHHHHHHHHHHHHcCccccc
Q 040580 384 K---RQRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 384 ~---~~~~~~~~~l~~~~~~~g~~~~a 407 (412)
. +.++..+..++.+|.+.|++++|
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 2 24455555666666666666665
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=9.5e-22 Score=181.09 Aligned_cols=302 Identities=12% Similarity=0.001 Sum_probs=241.2
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHcc
Q 040580 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS---VQVLSDLMDAYGRI 127 (412)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 127 (412)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334567789999999999998864 33566888899999999999999999999887542221 35688889999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCCHHHH
Q 040580 128 GCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS----ATGNAFIIYYSRFGSLTEM 203 (412)
Q Consensus 128 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a 203 (412)
|+++.|.++|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999997653 455668999999999999999999999999886544322 2345667778889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
...++++.+.. +.+...+..+...+.+.|++++|.+.++++....+.....+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988754 33466778888999999999999999998865554433467888999999999999999999998876
Q ss_pred CCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---ccccchHHHHHHhc-cCCCCCCcc
Q 040580 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD---KRLGRNLDFGLSKM-NLDDSPVVS 359 (412)
Q Consensus 284 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m-~~~~~p~~~ 359 (412)
.|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++| +.++.|+..
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 577777788889999999999999999988764 6888888888887775 45788888889888 555555544
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=7.4e-22 Score=181.79 Aligned_cols=308 Identities=14% Similarity=0.019 Sum_probs=255.1
Q ss_pred ccccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHhcCC
Q 040580 21 SHQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD---NSTLCALMLCYANNGF 94 (412)
Q Consensus 21 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~ 94 (412)
..+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+...+..++ ..++..+...+.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456789999999999998754 556788899999999999999999999987643222 3567888999999999
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCH----HhHHHHHHHHHhcCChHHHHH
Q 040580 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP----EVYSRAISCFGKQGQLELMEN 170 (412)
Q Consensus 95 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~ 170 (412)
+++|..+|+.+.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999864 567889999999999999999999999999876532221 245667788889999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCC
Q 040580 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250 (412)
Q Consensus 171 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 250 (412)
.|+++.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|.+.++++....+
T Consensus 202 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999987532 245677788899999999999999999998765333356788999999999999999999999866655
Q ss_pred CcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHc---cCChhHHHHHHHHHHhCCCCCCHhhH
Q 040580 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR---MSMFWDLHLSLEHMKHESVGPDLVTY 327 (412)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~ 327 (412)
+. ..+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 281 ~~--~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-- 354 (389)
T PRK11788 281 GA--DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR-- 354 (389)
T ss_pred Cc--hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC--
Confidence 43 56688999999999999999999998875 7999999988888775 558999999999999988888876
Q ss_pred HHHHHHHHhcccc
Q 040580 328 GCVVDAYLDKRLG 340 (412)
Q Consensus 328 ~~li~~~~~~~~~ 340 (412)
..|.++|..
T Consensus 355 ----~~c~~cg~~ 363 (389)
T PRK11788 355 ----YRCRNCGFT 363 (389)
T ss_pred ----EECCCCCCC
Confidence 235556554
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=8.8e-18 Score=162.70 Aligned_cols=323 Identities=10% Similarity=-0.025 Sum_probs=243.5
Q ss_pred cccccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 040580 18 NVPSHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94 (412)
Q Consensus 18 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 94 (412)
.++..+.+.|++++|..+++.+.. .+...+..++.+....|+++.|...|+++.+.. +.+...+..+...+...|+
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 344556788899999888887754 255566667777778899999999999988763 3356677888888888999
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 040580 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKE 174 (412)
Q Consensus 95 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 174 (412)
+++|...++...+.. +.+...+..+...+...|++++|...++++.... +.++..+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 999999999888764 5567788888888999999999999888876554 3344444443 347788999999999988
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHH----HHHHHHHHhcCCC
Q 040580 175 MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM----LGEFLRDVGLGRK 250 (412)
Q Consensus 175 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~ 250 (412)
+.+....++......+..++.+.|++++|...++...+.. +.+...+..+...|...|++++ |...+++.....+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 8776433344455556677888899999999998888765 3457778888888888888875 7888887655444
Q ss_pred CcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHh-hHH
Q 040580 251 DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV-TYG 328 (412)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~ 328 (412)
+ +..++..+...+...|++++|...+++..+. .|+ ...+..+..++.+.|++++|...++.+... .|+.. .+.
T Consensus 282 ~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~ 356 (656)
T PRK15174 282 D-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR 356 (656)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH
Confidence 4 4578888888899999999999999888865 444 456667788888899999999998888764 34432 233
Q ss_pred HHHHHHHhccccchHHHHHHhc
Q 040580 329 CVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 329 ~li~~~~~~~~~~~a~~~~~~m 350 (412)
.+..++...|+.++|.+.+++.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3456678889999999998887
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.5e-17 Score=161.09 Aligned_cols=352 Identities=10% Similarity=-0.043 Sum_probs=276.5
Q ss_pred ccCCCChHHHHHHHHHhhcc------ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH
Q 040580 23 QTHPKNGDLARKIIRYRKQE------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVL 96 (412)
Q Consensus 23 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 96 (412)
+.+..+|+..--.|..-++. +..-.-.++..+.+.|++++|..+++........ +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 44667777777777665543 3334556677888999999999999999886433 4556666677778899999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMV 176 (412)
Q Consensus 97 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 176 (412)
.|...++.+.+.. +.+...+..+...+.+.|++++|...+++..... +.++..+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999999875 5677889999999999999999999999998754 4556789999999999999999999999887
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHH
Q 040580 177 SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256 (412)
Q Consensus 177 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 256 (412)
.....+ ...+..+ ..+.+.|++++|...++.+.+....++......+..++...|++++|...+++.....++ +...
T Consensus 172 ~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~ 248 (656)
T PRK15174 172 QEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAAL 248 (656)
T ss_pred HhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHH
Confidence 754332 2233333 347889999999999999887654445555666678899999999999999987655544 4578
Q ss_pred HHHHHHHHhcCCChHH----HHHHHHHHHHcCCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 040580 257 WNLLLLSYAGNFKMKS----LQREFMRMSEAGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331 (412)
Q Consensus 257 ~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 331 (412)
+..+...|...|++++ |...|++..+. .|+ ...+..+...+...|++++|...+++..+.... +...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 8889999999999986 89999998865 454 678889999999999999999999998875322 455677788
Q ss_pred HHHHhccccchHHHHHHhc-cCCCCCCcccH-HHHHHHHhc-CCcccHHHHHHHhcc
Q 040580 332 DAYLDKRLGRNLDFGLSKM-NLDDSPVVSTD-PYVFEAFGK-GDFHSSSEAFLEFKR 385 (412)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~-~~li~~~~~-~~~~~a~~~~~~~~~ 385 (412)
.++.+.|++++|.+.++.+ ... |+...+ ..+..++.. |+.++|.+.+.+...
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998 433 333232 223345555 999999999988644
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=8.2e-17 Score=166.27 Aligned_cols=377 Identities=8% Similarity=-0.050 Sum_probs=252.8
Q ss_pred ccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCC-CHHhHH------------H
Q 040580 21 SHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLP-DNSTLC------------A 84 (412)
Q Consensus 21 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~------------~ 84 (412)
..+...|++++|...|++..+ .+...+..+...+.+.|++++|+..|++..+..... ....+. .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 456678999999999988765 267788889999999999999999999988753221 112221 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH------
Q 040580 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC------ 158 (412)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~------ 158 (412)
....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +.++..+..+...
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCH
Confidence 2345678899999999999999875 5567788889999999999999999999987654 3334444433333
Q ss_pred ------------------------------------HHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHH
Q 040580 159 ------------------------------------FGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLT 201 (412)
Q Consensus 159 ------------------------------------~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 201 (412)
+...|++++|++.|++..+. .| +...+..+...+.+.|+++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 33455666666666665553 23 2334445555566666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcch---------HHHHHHHHHHhcCCChHH
Q 040580 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN---------LLWNLLLLSYAGNFKMKS 272 (412)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~ 272 (412)
+|...++.+.+.. +.+...+..+...+...++.++|...++.+.....+.+. ..+..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 6666666655432 123333333344445556666666666554322221111 111233455667778888
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhccC
Q 040580 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNL 352 (412)
Q Consensus 273 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (412)
|..+++. .+++...+..+...+.+.|+.++|...|++..+... .+...+..+...|...|+.++|.+.++....
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8777661 244556677788889999999999999999887532 2577888899999999999999999998732
Q ss_pred CCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc--C-------chHHHHHHHHHHHHcCcccccc
Q 040580 353 DDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR--Q-------RKWTYRKLIAVYLKKQLRRNQI 408 (412)
Q Consensus 353 ~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~--~-------~~~~~~~l~~~~~~~g~~~~a~ 408 (412)
....+......+-..+.. |++++|.+.+.+... + +...+..+...+.+.|+.++|.
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 221222333444455545 999999999998754 1 1246677788899999998883
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.2e-16 Score=155.02 Aligned_cols=356 Identities=9% Similarity=-0.049 Sum_probs=258.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 040580 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126 (412)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 126 (412)
+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|...++..++.+ +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445566677778888888888877753 5677777777778888888888888888877764 4456777778888888
Q ss_pred cCCHHHHHHHHHHHhhcCC-----------------------------CCCHHhHHHH----------------------
Q 040580 127 IGCFNEIISIIDQVSCRNA-----------------------------DLLPEVYSRA---------------------- 155 (412)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~-----------------------------~~~~~~~~~l---------------------- 155 (412)
.|++++|..-|......+- +.+...+..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 8888877665543321110 0000000000
Q ss_pred --------HHH------HHhcCChHHHHHHHHHHHHCC-CCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 040580 156 --------ISC------FGKQGQLELMENTLKEMVSRG-FSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK 219 (412)
Q Consensus 156 --------i~~------~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 219 (412)
+.. ....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++...+.. +-..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 000 012357889999999998764 334 34567778888889999999999999998764 2246
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 040580 220 EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299 (412)
Q Consensus 220 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 299 (412)
..|..+...+...|++++|...+++.-...++ +..+|..+...+...|++++|+..|++..+.. +.+...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 68888999999999999999999986444333 35889999999999999999999999998753 33466777888899
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc-cCCCCCCcccH------HHHHHHHh-cC
Q 040580 300 SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPVVSTD------PYVFEAFG-KG 371 (412)
Q Consensus 300 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~------~~li~~~~-~~ 371 (412)
.+.|++++|...+++..+.. +-+...++.+...+...|++++|.+.+++. ......+.... +.....+. .|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999987642 225678888899999999999999999986 43322111111 11222333 38
Q ss_pred CcccHHHHHHHhc---cCchHHHHHHHHHHHHcCccccccc
Q 040580 372 DFHSSSEAFLEFK---RQRKWTYRKLIAVYLKKQLRRNQIF 409 (412)
Q Consensus 372 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~ 409 (412)
++++|.+.+.+.. +.+...+..++..|.+.|++++|.-
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999998743 3566779999999999999999943
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=4.5e-16 Score=133.53 Aligned_cols=356 Identities=10% Similarity=0.002 Sum_probs=267.1
Q ss_pred HHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 040580 35 IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV 114 (412)
Q Consensus 35 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 114 (412)
++-+...++..+|..||.++++--..++|.+++++-.....+.+..+||.+|.+-+-... .++..+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 444455556779999999999999999999999999888889999999999987654433 7889999999999999
Q ss_pred HHHHHHHHHHHccCCHHH----HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHH-HHHHHHHH----HHCCCCC---
Q 040580 115 QVLSDLMDAYGRIGCFNE----IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL-MENTLKEM----VSRGFSV--- 182 (412)
Q Consensus 115 ~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m----~~~g~~p--- 182 (412)
.|+|+++++.++.|+++. |.+++.+|++-|+.|...+|..+|..+++-++..+ +..++.++ ..+.++|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998765 56788899999999999999999999999988754 34444444 3344444
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcch
Q 040580 183 -DSATGNAFIIYYSRFGSLTEMETAYGRLKRSR----HLID---KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN 254 (412)
Q Consensus 183 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 254 (412)
|..-|...|..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.|.....+.....++.|...-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 44567888999999999999999988776532 2333 234677788888888999999999998776666677
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccC-Ch--------------------hHHHHHHH
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS-MF--------------------WDLHLSLE 313 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~--------------------~~a~~~~~ 313 (412)
.+...++.+....|.++-.-+++.+++..|..-+...-.-++.-+++.. +. +....--.
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 8899999999999999999999999998885555544444555555443 11 00111123
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc-cC-CCCCCcccHHHHHHHH----hcCCcccHHHHHHHhccCc
Q 040580 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NL-DDSPVVSTDPYVFEAF----GKGDFHSSSEAFLEFKRQR 387 (412)
Q Consensus 314 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~-~~~p~~~~~~~li~~~----~~~~~~~a~~~~~~~~~~~ 387 (412)
+|.+..+. ....+.+.-.+.|.|+.++|.+++..+ +. +-.|.....+.++... .+.+...|...+.-+...|
T Consensus 514 R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 514 RQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34444444 445666777788999999999999998 43 3336666666555543 3377778888888776666
Q ss_pred hHHHHHHHH
Q 040580 388 KWTYRKLIA 396 (412)
Q Consensus 388 ~~~~~~l~~ 396 (412)
.....-|.+
T Consensus 592 ~~~~E~La~ 600 (625)
T KOG4422|consen 592 LPICEGLAQ 600 (625)
T ss_pred chhhhHHHH
Confidence 555554443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1e-15 Score=148.69 Aligned_cols=360 Identities=9% Similarity=-0.069 Sum_probs=269.6
Q ss_pred cccccccCCCChHHHHHHHHHhhc--cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh
Q 040580 18 NVPSHQTHPKNGDLARKIIRYRKQ--EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95 (412)
Q Consensus 18 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 95 (412)
.....+.+.|++++|...|++... |+...|..+..++.+.|++++|++.++...+.. +.+...|..+..++...|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 455677889999999999998764 577788889999999999999999999998863 33567888899999999999
Q ss_pred HHHHHHHHHHHhCC-C----------------------------CcCHHHHHHH--------------------------
Q 040580 96 LEAQVVWEELLSSS-F----------------------------VLSVQVLSDL-------------------------- 120 (412)
Q Consensus 96 ~~a~~~~~~m~~~~-~----------------------------~~~~~~~~~l-------------------------- 120 (412)
++|..-|......+ . +++...+..+
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 99987665443211 0 0000000000
Q ss_pred ----HHHH------HccCCHHHHHHHHHHHhhcC-CCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHH
Q 040580 121 ----MDAY------GRIGCFNEIISIIDQVSCRN-ADL-LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD-SATG 187 (412)
Q Consensus 121 ----i~~~------~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~ 187 (412)
+... ...+++++|.+.|++..+.+ ..| ....|+.+...+...|++++|+..|++..+. .|+ ...|
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~ 368 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSY 368 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHH
Confidence 0000 11257889999999987654 122 2347888888889999999999999999875 454 5578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC
Q 040580 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267 (412)
Q Consensus 188 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 267 (412)
..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|...|++.....++ +...+..+...+.+.
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHC
Confidence 888888999999999999999998764 346788999999999999999999999987555444 357788888999999
Q ss_pred CChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHh------hHHHHHHHHHhcccc
Q 040580 268 FKMKSLQREFMRMSEAGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLV------TYGCVVDAYLDKRLG 340 (412)
Q Consensus 268 g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------~~~~li~~~~~~~~~ 340 (412)
|++++|+..|++..+. .|+ ...++.+...+...|++++|...|++........+.. .++.....+...|++
T Consensus 447 g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 447 GSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 9999999999998864 454 6788889999999999999999999987643221111 112222233346899
Q ss_pred chHHHHHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc
Q 040580 341 RNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR 385 (412)
Q Consensus 341 ~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~ 385 (412)
++|.+.+++. ...+ .+...+..+...+.+ |++++|.+.+++...
T Consensus 525 ~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 525 IEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999987 4432 222345666666766 999999999987544
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.80 E-value=8.4e-16 Score=158.85 Aligned_cols=364 Identities=10% Similarity=-0.044 Sum_probs=267.4
Q ss_pred CCchhhccccccccccCCCChHHHHHHHHHhhccCh-----hhHHHH------------HHHHhcCCChhHHHHHHHHHH
Q 040580 9 HGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGF-----VDCASL------------VEDLGRKKKPHLAHQLVNTVK 71 (412)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l------------i~~~~~~~~~~~a~~~~~~m~ 71 (412)
++.....+..+...|.+.|++++|+..|++..+.+. ..|..+ ...+.+.|++++|.+.|++..
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444445566777888899999999999998765321 122222 345678899999999999998
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH-------------------------------
Q 040580 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL------------------------------- 120 (412)
Q Consensus 72 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------------------------- 120 (412)
+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 379 ~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 379 QVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 863 3456777788899999999999999999998754 3333333322
Q ss_pred -----------HHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 040580 121 -----------MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189 (412)
Q Consensus 121 -----------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 189 (412)
...+...|++++|.+.|++..+.. +-++..+..+...|.+.|++++|...+++..+.... +...+..
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a 534 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYA 534 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 334456789999999999988765 446678888999999999999999999999875322 3344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHH
Q 040580 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKE---------GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL 260 (412)
Q Consensus 190 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (412)
+...+...++.++|...++.+......++.. .+..+...+...|++++|.++++. .+. +...+..+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---~p~--~~~~~~~L 609 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---QPP--STRIDLTL 609 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---CCC--CchHHHHH
Confidence 4556678899999999998875433222221 233456778889999999999883 222 33677888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhccc
Q 040580 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP-DLVTYGCVVDAYLDKRL 339 (412)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 339 (412)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|+.++|.+.++...+. .| +......+..++...|+
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCC
Confidence 899999999999999999999763 334778889999999999999999999987653 33 45566677788889999
Q ss_pred cchHHHHHHhc-cCCC-CCC----cccHHHHHHHHhc-CCcccHHHHHHHhc
Q 040580 340 GRNLDFGLSKM-NLDD-SPV----VSTDPYVFEAFGK-GDFHSSSEAFLEFK 384 (412)
Q Consensus 340 ~~~a~~~~~~m-~~~~-~p~----~~~~~~li~~~~~-~~~~~a~~~~~~~~ 384 (412)
+++|.++++.+ .... .|. ...+..+-..+.. |+.++|.+.+.+..
T Consensus 687 ~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 687 TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999998 3322 121 1223333344544 99999999988754
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=2.6e-15 Score=148.57 Aligned_cols=380 Identities=9% Similarity=-0.050 Sum_probs=205.8
Q ss_pred cccccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 040580 18 NVPSHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94 (412)
Q Consensus 18 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 94 (412)
-.+......|+.++|++++..... .+...+..+...+...|++++|.++|++..+.. +.+...+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 344556678888888888888764 244457888888888899999999998887752 3356667777788888899
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 040580 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKE 174 (412)
Q Consensus 95 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 174 (412)
+++|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +-++..+..+...+...|..++|+..++.
T Consensus 99 ~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 999999888888763 55566 8888888888899999999998887765 44556666677777777777777766654
Q ss_pred HHHCCCCCCh------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHHHHHhccc
Q 040580 175 MVSRGFSVDS------ATGNAFIIYYS-----RFGSL---TEMETAYGRLKRS-RHLIDKE-GIR----AVSFTYLKERK 234 (412)
Q Consensus 175 m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~li~~~~~~~~ 234 (412)
... .|+. .....++.... ..+++ ++|...++.+.+. ...|+.. .+. ..+.++...|+
T Consensus 176 ~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 176 ANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 432 1211 00111111111 11122 4455555555432 1112111 000 00223334455
Q ss_pred HHHHHHHHHHHhcCCCC-cchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-----HhHHHHHHHHHHccCChhHH
Q 040580 235 FFMLGEFLRDVGLGRKD-LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD-----LTTFNIRAVAFSRMSMFWDL 308 (412)
Q Consensus 235 ~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a 308 (412)
+++|...|+.+...++. |+ ..-..+..+|...|++++|+..|+++.+. .|. ......+..++...|++++|
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred HHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 55555555554433321 11 11111344555555555555555555432 111 12233444455555555555
Q ss_pred HHHHHHHHhCC-----------CCCC---HhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCc
Q 040580 309 HLSLEHMKHES-----------VGPD---LVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDF 373 (412)
Q Consensus 309 ~~~~~~m~~~g-----------~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~ 373 (412)
..+++.+.+.. -.|+ ...+..+...+...|+.++|.+.++++....+-+...+..+...+.. |+.
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 55555554321 0112 11223334444555555555555555521111122223333333333 555
Q ss_pred ccHHHHHHHhcc---CchHHHHHHHHHHHHcCccccc
Q 040580 374 HSSSEAFLEFKR---QRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 374 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 407 (412)
++|.+.+++... .+...+..++..+.+.|++++|
T Consensus 410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 555555554322 3344455555555555555554
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=2.3e-16 Score=141.19 Aligned_cols=375 Identities=11% Similarity=0.031 Sum_probs=269.5
Q ss_pred hccccccccccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHH-HHHHH
Q 040580 14 FKRFNVPSHQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA-LMLCY 89 (412)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~ 89 (412)
..|..+...+-..|++++|...++.+.+. .+..|..+..++...|+.+.|.+.|.+..+. .|+.....+ +....
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 33555667777888888888888887653 5677888888888888888888888888764 565443332 33444
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 040580 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169 (412)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 169 (412)
-..|++++|..-|.+.++.. +-=...|+.|...+-..|+.-.|++.|++....+ +--++.|-.|-..|...+.+++|+
T Consensus 195 ka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHH
Confidence 45678888888777777643 2234678888888888888888888888876433 222458888888888888888888
Q ss_pred HHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHhc
Q 040580 170 NTLKEMVSRGFSVD-SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID-KEGIRAVSFTYLKERKFFMLGEFLRDVGL 247 (412)
Q Consensus 170 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 247 (412)
..+.+.... .|+ ...+..+...|-..|.++.|...+++..+.. |+ +..|+.|..++...|++.+|.+.+.+.-.
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 888777653 454 4667777777888888888888888877653 44 66788888888888888888888887433
Q ss_pred CCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-Hh
Q 040580 248 GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD-LV 325 (412)
Q Consensus 248 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ 325 (412)
-.+. -..+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-++|++++|...|++.++ ++|+ ..
T Consensus 349 l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd 423 (966)
T KOG4626|consen 349 LCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD 423 (966)
T ss_pred hCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH
Confidence 3222 1367888888888888888888888877753 565 56778888888888888888888888765 6675 46
Q ss_pred hHHHHHHHHHhccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHH---hccCchHHHHHHHHHHHH
Q 040580 326 TYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLE---FKRQRKWTYRKLIAVYLK 400 (412)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~ 400 (412)
.|+.+-..|-..|+...|.+.+... ...+ --...++.|-..|.. |+..+|+.-+.+ ++|.-+..|..++.++--
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 7777777888888888888877776 3332 123335566667766 888888877765 344456667666666554
Q ss_pred cC
Q 040580 401 KQ 402 (412)
Q Consensus 401 ~g 402 (412)
..
T Consensus 503 vc 504 (966)
T KOG4626|consen 503 VC 504 (966)
T ss_pred Hh
Confidence 33
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=3.9e-15 Score=147.36 Aligned_cols=362 Identities=10% Similarity=-0.020 Sum_probs=265.6
Q ss_pred hccccccccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 040580 14 FKRFNVPSHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90 (412)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 90 (412)
..+..+...+.+.|++++|...+++..+ .+...+..+...+...|++++|+..+++..+.. +.+.. +..+..++.
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~ 127 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHH
Confidence 3466777788999999999999999643 356678888889999999999999999998863 44566 888889999
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCH------HhHHHHHHHHH----
Q 040580 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP------EVYSRAISCFG---- 160 (412)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~---- 160 (412)
..|+.++|...++++.+.. +.+...+..+..++...+..+.|++.++.... .|+. .....++....
T Consensus 128 ~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999875 55677777888899999999999999987653 1111 11222222222
Q ss_pred -hcCCh---HHHHHHHHHHHHC-CCCCChH-HHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 040580 161 -KQGQL---ELMENTLKEMVSR-GFSVDSA-TGN----AFIIYYSRFGSLTEMETAYGRLKRSRHL-IDKEGIRAVSFTY 229 (412)
Q Consensus 161 -~~g~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 229 (412)
..+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|++++|...|+.+.+.+.+ |+. ....+..+|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 22234 7788899988864 2233321 111 1134556779999999999999987632 332 223357789
Q ss_pred HhcccHHHHHHHHHHHhcCCCCc---chHHHHHHHHHHhcCCChHHHHHHHHHHHHcC-----------CCCcH---hHH
Q 040580 230 LKERKFFMLGEFLRDVGLGRKDL---GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG-----------FHPDL---TTF 292 (412)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----------~~p~~---~~~ 292 (412)
...|++++|...++++....+.. .......+..++...|++++|..+++.+.+.. -.|+. ..+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999875433221 12456677778899999999999999998642 11332 245
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc-cCCCCCCccc--HHHHHHHHh
Q 040580 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPVVST--DPYVFEAFG 369 (412)
Q Consensus 293 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~--~~~li~~~~ 369 (412)
..+...+...|+.++|.++++++.... +-+...+..+...+...|++++|.+.+++. ... |+... +...+.+..
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHH
Confidence 567778899999999999999987642 235778888888999999999999999998 433 44322 233333345
Q ss_pred cCCcccHHHHHHHhcc
Q 040580 370 KGDFHSSSEAFLEFKR 385 (412)
Q Consensus 370 ~~~~~~a~~~~~~~~~ 385 (412)
.+++++|..+++++..
T Consensus 440 ~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 440 LQEWRQMDVLTDDVVA 455 (765)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 5999999999998765
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=8.3e-14 Score=135.91 Aligned_cols=182 Identities=9% Similarity=0.031 Sum_probs=130.3
Q ss_pred cccCCCChHHHHHHHHHhhccChh---hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 22 HQTHPKNGDLARKIIRYRKQEGFV---DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA 98 (412)
Q Consensus 22 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 98 (412)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.... -.........+...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 356899999999999988764332 2337888888889999999999988721 122333344445678888999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 99 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
.++|+.+.+.. +-+...+..++..+.+.++.++|++.++++.... |+...+-.++..+...++..+|+..++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 99999999875 5567777888889999999999999999986543 33334433333333456666699999999886
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040580 179 GFSV-DSATGNAFIIYYSRFGSLTEMETAYGR 209 (412)
Q Consensus 179 g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 209 (412)
. | +...+..+..+..+.|-...|.++..+
T Consensus 199 ~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 199 A--PTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred C--CCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 3 4 455666777777777776666655543
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2.4e-14 Score=123.04 Aligned_cols=302 Identities=10% Similarity=0.012 Sum_probs=201.5
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 040580 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155 (412)
Q Consensus 76 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 155 (412)
+-+..|+.++|.+.|+-...+.|.++|++-.....+.+..+||.+|.+-+-.. -.+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 34667888888888888888888888887776666778888888877644322 26677788777778888888888
Q ss_pred HHHHHhcCChHH----HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCCC----CHHHH
Q 040580 156 ISCFGKQGQLEL----MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE-METAYGRLKR----SRHLI----DKEGI 222 (412)
Q Consensus 156 i~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~----~~~~~----~~~~~ 222 (412)
+++..+.|+++. |++++.+|++-|+.|...+|..+|..+++.++..+ +..++.++.. ..++| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 888888887654 45667778888888888888888888887777643 4444444432 12222 34456
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhcC------CCCc-chHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 040580 223 RAVSFTYLKERKFFMLGEFLRDVGLG------RKDL-GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295 (412)
Q Consensus 223 ~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 295 (412)
...+..|.+..+.+-|.++-.-.... ++.. ...-|..+..+.|+....+.-...|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 66667777777766666654433111 0100 1234556667777777888888888888876677888899999
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcc-ccc-----h--------H---HHHH----Hhc-cCC
Q 040580 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR-LGR-----N--------L---DFGL----SKM-NLD 353 (412)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~-----~--------a---~~~~----~~m-~~~ 353 (412)
++|....|.++-..++|..++..|.........-++.-+++.+ .+. + | .+.+ ..| ...
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 9999999999999999999988886666555555666666544 110 0 1 1111 222 222
Q ss_pred CCCCcccHHHHHHHHhc-CCcccHHHHHHHh
Q 040580 354 DSPVVSTDPYVFEAFGK-GDFHSSSEAFLEF 383 (412)
Q Consensus 354 ~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~ 383 (412)
. .....+.+.-.+.+ |++++|.++|.-+
T Consensus 520 ~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 520 W--PATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred C--ChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 2 23334555555666 9999999999877
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=3.1e-15 Score=134.11 Aligned_cols=351 Identities=11% Similarity=0.010 Sum_probs=273.6
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHH-HHHHHH
Q 040580 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQV-LSDLMD 122 (412)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~ 122 (412)
..+|..+...+...|++++|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 3468888889999999999999999998863 225778999999999999999999999988875 465443 334445
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHH
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD-SATGNAFIIYYSRFGSLT 201 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 201 (412)
..-..|++.+|...+.+..+.. +.-...|+.|-..+..+|+...|+..|++..+- .|+ ...|-.|-..|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 5556789999999988887654 223448999999999999999999999998874 554 357888889999999999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHH
Q 040580 202 EMETAYGRLKRSRHLID-KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280 (412)
Q Consensus 202 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 280 (412)
+|...+...... .|+ ...+..+...|...|++|-|...+++.-...++. ..+|+.|..++-..|++.+|.+.+.+.
T Consensus 270 ~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999998877654 454 5667777778888999999999999865554443 389999999999999999999999988
Q ss_pred HHcCCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhccccchHHHHHHhccCCCCCC-
Q 040580 281 SEAGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD-LVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPV- 357 (412)
Q Consensus 281 ~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~- 357 (412)
... .|+ ..+.+.|...+...|.+++|..+|....+ +.|. ...++.|...|-..|+.++|...+++.- .++|+
T Consensus 347 L~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal-rI~P~f 421 (966)
T KOG4626|consen 347 LRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL-RIKPTF 421 (966)
T ss_pred HHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-hcCchH
Confidence 765 565 56788899999999999999999988765 4453 5667888888989999999999998872 13343
Q ss_pred cccHHHHHHHHhc-CCcccHHHHHHHhccC---chHHHHHHHHHHHHcCcccccc
Q 040580 358 VSTDPYVFEAFGK-GDFHSSSEAFLEFKRQ---RKWTYRKLIAVYLKKQLRRNQI 408 (412)
Q Consensus 358 ~~~~~~li~~~~~-~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 408 (412)
...|+.+-..|.. |+...|..-+.+.... -....+.|.+.|-..|+..+|+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 2345555556655 8888888888775543 3556888888888899887773
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=2.2e-13 Score=132.99 Aligned_cols=350 Identities=12% Similarity=0.022 Sum_probs=259.4
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCH
Q 040580 53 DLGRKKKPHLAHQLVNTVKSEGLLPDN--STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130 (412)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 130 (412)
...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...+++..... +........+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 456899999999999999876 4553 344 88888889999999999999998321 33344455557789999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040580 131 NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210 (412)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 210 (412)
++|.++|+++.+.. +-++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|...++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999998876 566788888899999999999999999999886 566666655555555566776799999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH----------------------------------------------
Q 040580 211 KRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD---------------------------------------------- 244 (412)
Q Consensus 211 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---------------------------------------------- 244 (412)
.+.. +-+...+..++.++.+.|-...|.++..+
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 9875 33566667777777666554444443332
Q ss_pred --Hhc-CCCCcc-----hHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHH
Q 040580 245 --VGL-GRKDLG-----NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316 (412)
Q Consensus 245 --~~~-~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 316 (412)
+.. -+..|. ..+.--.+-++...|+..++++.|+.|...|.+....+-..+..+|...+++++|..++..+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 111 011111 111223356778889999999999999988865445577789999999999999999999986
Q ss_pred hCC-----CCCCHhhHHHHHHHHHhccccchHHHHHHhccCCCC------------CCcc--c-HHHHHHHHhc-CCccc
Q 040580 317 HES-----VGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS------------PVVS--T-DPYVFEAFGK-GDFHS 375 (412)
Q Consensus 317 ~~g-----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------p~~~--~-~~~li~~~~~-~~~~~ 375 (412)
... ..++......|.-+|...+++++|..+++.+....+ |+.. . +..+...+.. |+..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 643 233444457889999999999999999999933211 2211 1 2233444555 99999
Q ss_pred HHHHHHHhcc---CchHHHHHHHHHHHHcCcccccccc
Q 040580 376 SSEAFLEFKR---QRKWTYRKLIAVYLKKQLRRNQIFW 410 (412)
Q Consensus 376 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~w 410 (412)
|.+.++++.. .|......+.+.+...|+.++|+-|
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~ 472 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQE 472 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999998754 7899999999999999999988543
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=9.8e-13 Score=120.47 Aligned_cols=280 Identities=10% Similarity=-0.022 Sum_probs=214.0
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHh-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH--HHHHHHHccCCHHHH
Q 040580 57 KKKPHLAHQLVNTVKSEGLLPDNST-LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS--DLMDAYGRIGCFNEI 133 (412)
Q Consensus 57 ~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a 133 (412)
.|+++.|.+.+....+.+ +++.. |.....+..+.|+++.+...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 23333 333345557899999999999999875 45554332 346788889999999
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-------HHHHHHHHHHHhcCCHHHHHHH
Q 040580 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS-------ATGNAFIIYYSRFGSLTEMETA 206 (412)
Q Consensus 134 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~ 206 (412)
.+.++++.+.+ +-++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998766 567778899999999999999999999999988665322 2344455555555667777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 040580 207 YGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286 (412)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 286 (412)
++.+.+. .+.++.....+..++...|+.++|.+.+++.-..++++ --.++.+....++.++++...+...+. .
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~----~l~~l~~~l~~~~~~~al~~~e~~lk~--~ 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE----RLVLLIPRLKTNNPEQLEKVLRQQIKQ--H 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH----HHHHHHhhccCCChHHHHHHHHHHHhh--C
Confidence 7776543 34578888999999999999999999998875544433 122344555669999999999998866 5
Q ss_pred Cc-HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 287 PD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 287 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
|+ ...+..+...+.+.+++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.+.+++-
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55 45677888899999999999999999877 5689999889999999999999999998875
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.7e-12 Score=118.91 Aligned_cols=278 Identities=13% Similarity=0.028 Sum_probs=136.1
Q ss_pred CCChHHHHHHHHHhhcc--ChhhHH-HHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHH--HHHHHHHhcCChHHHHH
Q 040580 26 PKNGDLARKIIRYRKQE--GFVDCA-SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC--ALMLCYANNGFVLEAQV 100 (412)
Q Consensus 26 ~~~~~~A~~~~~~~~~~--~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 100 (412)
.|+++.|++.+...++. ++..+. ....+..+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566665555554432 112222 2222334556666666666665543 33432222 22344555566666666
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHh--------HHHHHHHHHhcCChHHHHHHH
Q 040580 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV--------YSRAISCFGKQGQLELMENTL 172 (412)
Q Consensus 101 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--------~~~li~~~~~~g~~~~a~~~~ 172 (412)
.++.+.+.. |-+......+...|.+.|++++|.+++..+.+.+.. ++.. |..++.......+.+...+++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-DEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666655544 334555555566666666666666666666554432 2221 122222222333344444444
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCc
Q 040580 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252 (412)
Q Consensus 173 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 252 (412)
+.+.+. .+.+......+...+...|+.++|..++++..+. .|++... ++.+....++.+++.+..+......++
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~- 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD- 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence 444222 1224445555555566666666666666555542 2333111 222223345555555555554443333
Q ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHH
Q 040580 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315 (412)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 315 (412)
|...+.++...+.+.+++++|...|+...+. .|+..++..+...+.+.|+.++|.+++++-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2345555556666666666666666665543 455555555666666666666665555543
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=5.1e-15 Score=129.56 Aligned_cols=256 Identities=15% Similarity=0.067 Sum_probs=63.5
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 040580 51 VEDLGRKKKPHLAHQLVNTVKSEGLLP-DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129 (412)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 129 (412)
...+.+.|++++|++++++......+| +...|..+...+...++.+.|...|+.+.+.+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 344445555555555554333222122 22233333334444555555555555555543 2234444444444 45555
Q ss_pred HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 040580 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG-FSVDSATGNAFIIYYSRFGSLTEMETAYG 208 (412)
Q Consensus 130 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 208 (412)
+++|.+++++.-++ .+++..+..++..+.+.++++++.+++++..... ..++...|..+...+.+.|+.++|...++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555544322 2344445555555555555555555555544322 22344445555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 040580 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287 (412)
Q Consensus 209 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 287 (412)
+..+.. +-|....+.++..+...|+.+++.+++....... .++ ..+..+..+|...|+.++|+..|++..+.. +.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH--HHHHHHHHHhcccccccccccccccccccc-cc
Confidence 555443 1134444444555555555554444444332221 111 344555555555555555555555554431 22
Q ss_pred cHhHHHHHHHHHHccCChhHHHHHHHH
Q 040580 288 DLTTFNIRAVAFSRMSMFWDLHLSLEH 314 (412)
Q Consensus 288 ~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (412)
|......+..++...|+.++|..+..+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 344444555555555555555555443
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=4.1e-12 Score=117.06 Aligned_cols=299 Identities=10% Similarity=-0.072 Sum_probs=202.2
Q ss_pred HHHHHHHH--hcCCChhHHHHHHHHHHhcCCCCCHHh-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 040580 47 CASLVEDL--GRKKKPHLAHQLVNTVKSEGLLPDNST-LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123 (412)
Q Consensus 47 ~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 123 (412)
...+.++. ...|+++.|.+.+.+..+. .|+... +-....+..+.|+.+.|.+.++...+....+...+.-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 33444443 3568999999999887665 455433 344566777889999999999888765322222344445778
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH---HhcCCH
Q 040580 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY---SRFGSL 200 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~ 200 (412)
+...|+++.|.+.++.+.+.. +-++.++..+...+...|++++|.+.+..+.+.++.++......-..++ ...+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998775 5677788888999999999999999999998887543222211111111 222222
Q ss_pred HHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHH-HHHHHHHHhcCCChHHHHHH
Q 040580 201 TEMETAYGRLKRSRH---LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL-WNLLLLSYAGNFKMKSLQRE 276 (412)
Q Consensus 201 ~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~ 276 (412)
+.+.+.+..+.+... +.++..+..+...+...|+.++|.+.+++.-...++..... ...........++.+.+...
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 223334444443321 23778888888889999999999998888655444431111 12222223345777888888
Q ss_pred HHHHHHcCCCCcHh---HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 277 FMRMSEAGFHPDLT---TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 277 ~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
++...+. .|+.. ...++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-
T Consensus 322 ~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 322 IEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8877754 45543 445777788888999999998886555556788888888888888899999998888764
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=5.5e-12 Score=116.21 Aligned_cols=288 Identities=11% Similarity=-0.008 Sum_probs=211.8
Q ss_pred cCCCChHHHHHHHHHhhcc--C-hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHH--hHHHHHHHHHhcCChHHH
Q 040580 24 THPKNGDLARKIIRYRKQE--G-FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS--TLCALMLCYANNGFVLEA 98 (412)
Q Consensus 24 ~~~~~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a 98 (412)
...|+++.|.+.+....+. + ...+-....+..+.|+.+.|.+.+.+..+. .|+.. .--.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4689999999999887663 2 223444456677889999999999998765 34543 334457778889999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHH-HHHH---HHHhcCChHHHHHHHHH
Q 040580 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS-RAIS---CFGKQGQLELMENTLKE 174 (412)
Q Consensus 99 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~---~~~~~g~~~~a~~~~~~ 174 (412)
...++.+.+.. |-+..++..+...+.+.|+++.|.+.++.+.+.++ +++..+. .-.. +....+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL-FDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999986 56778999999999999999999999999998874 4444342 1122 22333344444455555
Q ss_pred HHHCCC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcccHHHHHHHHHHHhcCC
Q 040580 175 MVSRGF---SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT--YLKERKFFMLGEFLRDVGLGR 249 (412)
Q Consensus 175 m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~ 249 (412)
+.+... +.+...+..+...+...|+.++|..+++...+.........+. ++.. ....++.+.+.+.++......
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 555422 1267788889999999999999999999999865322211111 2222 234577888888888765444
Q ss_pred CC-cchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHH
Q 040580 250 KD-LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316 (412)
Q Consensus 250 ~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 316 (412)
++ ++.....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++-.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 22256778899999999999999999964444458999999999999999999999999998753
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=1.2e-14 Score=127.16 Aligned_cols=260 Identities=15% Similarity=0.013 Sum_probs=111.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc
Q 040580 84 ALMLCYANNGFVLEAQVVWEELLSSS-FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162 (412)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 162 (412)
.+...+.+.|++++|.++++...... .+.|...|..+.......++.+.|.+.++++...+ +-++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45777889999999999996655443 24456666777778888999999999999998776 3467788888877 799
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcccHHHHHHH
Q 040580 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR-HLIDKEGIRAVSFTYLKERKFFMLGEF 241 (412)
Q Consensus 163 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~ 241 (412)
+++++|.+++.+..+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876653 566677888899999999999999999987543 356788899999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 040580 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321 (412)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 321 (412)
+++.-...|+ |....+.++..+...|+.+++..+++...+.. +.|...+..+..++...|+.++|...+++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 9987555554 45788999999999999999999999888653 4556677889999999999999999999987632 2
Q ss_pred CCHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 322 PDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 322 p~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
.|+.....+.+++...|+.++|.++..+.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 37888889999999999999999988765
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.60 E-value=5.6e-11 Score=118.79 Aligned_cols=365 Identities=9% Similarity=-0.097 Sum_probs=214.2
Q ss_pred CChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhc-C-CCCCHHhHHHHHHHHHhcCC---hHHH
Q 040580 27 KNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSE-G-LLPDNSTLCALMLCYANNGF---VLEA 98 (412)
Q Consensus 27 ~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~---~~~a 98 (412)
+...++.+.+..+.+. +....-.+--...+.|+.++|.++|+..... + -.++.....-|+..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 3344444444444332 3333333333456677788888888777652 1 22333444466666666654 2222
Q ss_pred HHH----------------------HHHHHh-CCC-Cc--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhH
Q 040580 99 QVV----------------------WEELLS-SSF-VL--SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152 (412)
Q Consensus 99 ~~~----------------------~~~m~~-~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 152 (412)
..+ ++...+ .+. ++ +...|..+..++.. ++.++|...+.+..... |+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHH
Confidence 222 111111 111 34 56777777777776 77777888777665443 332222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040580 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232 (412)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 232 (412)
..+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++...+.. +.+...+..+...+...
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC
Confidence 22334445788888888888877554 3444445556667778888888888888887654 22333333344444456
Q ss_pred ccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHccCChhHHHHH
Q 040580 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD-LTTFNIRAVAFSRMSMFWDLHLS 311 (412)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 311 (412)
|++++|...+++.....++ ...|..+...+.+.|++++|+..|++.... .|+ ...++.+..++...|+.++|...
T Consensus 590 Gr~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS--ANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888876554443 467778888888888888888888887765 444 55666677778888888888888
Q ss_pred HHHHHhCCCCC-CHhhHHHHHHHHHhccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhcCCcccHHHHHHHhcc--Cc
Q 040580 312 LEHMKHESVGP-DLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKR--QR 387 (412)
Q Consensus 312 ~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~--~~ 387 (412)
+++..+. .| +...+..+-.++...|++++|...+++. ...+..-...+..-.-...+.++..|.+.+.+... ++
T Consensus 666 l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 666 LERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 8877663 33 4566777777888888888888888887 43332222222111111222555555555555433 33
Q ss_pred hHHHHHHHHHHHHcCc
Q 040580 388 KWTYRKLIAVYLKKQL 403 (412)
Q Consensus 388 ~~~~~~l~~~~~~~g~ 403 (412)
..+.......+...++
T Consensus 744 ~~a~~~~g~~~~~~~~ 759 (987)
T PRK09782 744 SSIGLRSGAMSTANNN 759 (987)
T ss_pred chhccccchHhhhccc
Confidence 3333444444444433
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.60 E-value=1.9e-11 Score=122.06 Aligned_cols=275 Identities=13% Similarity=-0.039 Sum_probs=191.6
Q ss_pred HHccCCHHHHHHHHHHHhhc--CCCCCHHhHHHHHHHHHhcCC---hHHHHHH----------------------HHHHH
Q 040580 124 YGRIGCFNEIISIIDQVSCR--NADLLPEVYSRAISCFGKQGQ---LELMENT----------------------LKEMV 176 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~---~~~a~~~----------------------~~~m~ 176 (412)
..+.|+.++|.++|++.... +..+++...+-++..|.+.+. ..++..+ .....
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 44567788888888877541 123344455567777777665 3333333 11111
Q ss_pred HC-CCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCc
Q 040580 177 SR-GFSV---DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252 (412)
Q Consensus 177 ~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 252 (412)
.. +..| +...+..+..++.. ++.++|...+....... |+......+..++...|++++|...++++....+.+
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~ 542 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN 542 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc
Confidence 11 1222 34566666666665 78888999777776554 565444445555678999999999999875554443
Q ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 040580 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVV 331 (412)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 331 (412)
..+..+..++.+.|++++|...+++..+.. |+ ...+..+.......|++++|...+++..+. .|+...+..+.
T Consensus 543 --~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA 616 (987)
T PRK09782 543 --EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARA 616 (987)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 556677788899999999999999988753 44 333334444555669999999999998764 46788888899
Q ss_pred HHHHhccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHh---ccCchHHHHHHHHHHHHcCcccc
Q 040580 332 DAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEF---KRQRKWTYRKLIAVYLKKQLRRN 406 (412)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 406 (412)
..+.+.|+.++|.+.+++. ...+ .+...+..+-..+.. |+.++|.+.+.+. .|.++..+..+..++...|++++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998 4332 233344444445655 9999999988864 45678899999999999999998
Q ss_pred cc
Q 040580 407 QI 408 (412)
Q Consensus 407 a~ 408 (412)
|.
T Consensus 696 A~ 697 (987)
T PRK09782 696 TQ 697 (987)
T ss_pred HH
Confidence 84
No 33
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=4.2e-11 Score=102.76 Aligned_cols=284 Identities=12% Similarity=-0.012 Sum_probs=230.0
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 040580 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135 (412)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 135 (412)
-.|++.+|.++..+-.+.+-. ....|..-..+.-+.|+.+.+-++..+..+.--.++....-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 369999999999998887643 3445666677888899999999999999886436777888888899999999999999
Q ss_pred HHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 040580 136 IIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS-------ATGNAFIIYYSRFGSLTEMETAYG 208 (412)
Q Consensus 136 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~ 208 (412)
-+.++.+.+ +.++........+|.+.|++.....++..|.+.|+--+. .+|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999888766 667789999999999999999999999999999876543 568888888887777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHH-HcCCCC
Q 040580 209 RLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS-EAGFHP 287 (412)
Q Consensus 209 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p 287 (412)
+..+. .+.++..-.+++.-+..+|+.++|.++..+.-....++. -...-.+.+-++.+.-.+..++-. ..+..|
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 76553 356778888899999999999999999998777777652 223345566778888777777655 444444
Q ss_pred cHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 288 DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 288 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
-.+.+|-..|.+.+.+.+|...|+...+ ..|+..+|+.+-+++.+.|++.++.+..++-
T Consensus 329 --~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 --LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred --hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 6777899999999999999999996555 6789999999999999999999999998876
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=3.3e-11 Score=100.46 Aligned_cols=297 Identities=13% Similarity=0.028 Sum_probs=213.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCc--CHHHHHHHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS-FVL--SVQVLSDLMD 122 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~ 122 (412)
.|-.=++.+ -+.+.++|.++|-+|.+.. +-+..+.-+|.+.|-+.|.++.|+++.+.+.++. ++- -....-.|.+
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 344444433 3467899999999998752 3345566778899999999999999999998742 111 1234556778
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcC
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS----ATGNAFIIYYSRFG 198 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g 198 (412)
-|...|-+|.|+.+|..+.+.+ ..-+.....|+..|-...+|++|+++-+++.+.+-++.. ..|.-+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 8889999999999999998765 344558888999999999999999999999887655533 33555566666678
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHH
Q 040580 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278 (412)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 278 (412)
+++.|..++....+.+ +..+..-..+-+.....|++.+|.+.++.+....+..-..+...|..+|...|+.++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8999999998888765 223444455667788889999999999988887777666788888899999999999999888
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---cccchHHHHHHhc
Q 040580 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK---RLGRNLDFGLSKM 350 (412)
Q Consensus 279 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~m 350 (412)
++.+. .++...-..+-.......-.+.|..++.+-.. -+|+...+..+|+.-... |...+-...+..|
T Consensus 274 ~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 274 RAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred HHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 88865 33443444444444444445666665554433 368888888888876543 3344444555555
No 35
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2e-11 Score=115.35 Aligned_cols=386 Identities=10% Similarity=0.038 Sum_probs=205.9
Q ss_pred cccccccccCCCChHHHHHHHHHhhcc--C--hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh
Q 040580 16 RFNVPSHQTHPKNGDLARKIIRYRKQE--G--FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN 91 (412)
Q Consensus 16 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 91 (412)
+.-+.++|-..|++++|...+....+. | +..+--+...+.+.|+.+.+...|+..... .+-+..|..+|...|+.
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAH 388 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHh
Confidence 444445555555555555555544432 1 222334455555555555555555555543 12234455555555544
Q ss_pred cC----ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHH----HhhcCCCCCHHhHHHHHHHHHhcC
Q 040580 92 NG----FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ----VSCRNADLLPEVYSRAISCFGKQG 163 (412)
Q Consensus 92 ~~----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g 163 (412)
.+ ..+.|..+.....+.- +.|...|-.+...+-...-+.. +.+|.. +...+..+.|...|.+..-....|
T Consensus 389 ~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g 466 (1018)
T KOG2002|consen 389 SAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLG 466 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhc
Confidence 43 3334444444444332 3445555555554443332222 444432 223344466667777777777777
Q ss_pred ChHHHHHHHHHHHHC---CCCCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 040580 164 QLELMENTLKEMVSR---GFSVDSA-------TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID-KEGIRAVSFTYLKE 232 (412)
Q Consensus 164 ~~~~a~~~~~~m~~~---g~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 232 (412)
++..|...|+..... ...+|.. -|| +....-..++.+.|.+.|..+.+.. |+ ...|..+...-...
T Consensus 467 ~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 467 NIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDK 543 (1018)
T ss_pred ChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhc
Confidence 777777777666543 1122221 122 3334445556777777777766542 22 22233332222223
Q ss_pred ccHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCcHhHHHHHHHHHHc---------
Q 040580 233 RKFFMLGEFLRDVG-LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG-FHPDLTTFNIRAVAFSR--------- 301 (412)
Q Consensus 233 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~--------- 301 (412)
+...+|...++... ....+| ..++.+...|.+...+..|..-|....+.- ..+|..+.-.|-+.|..
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np--~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNP--NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCc--HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 55666666666642 233333 566666666766666666666565555321 12444444344443322
Q ss_pred ---cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHH
Q 040580 302 ---MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSS 377 (412)
Q Consensus 302 ---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~ 377 (412)
.+..++|+.+|....+... -|...-|-+--.++..|++..|..+|.++.....-...+|-.+-++|.. |.+..|+
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHH
Confidence 2345667777777665432 2555666666667778888888888888833222222234345556644 8888888
Q ss_pred HHHHHhcc-----CchHHHHHHHHHHHHcCcccccccc
Q 040580 378 EAFLEFKR-----QRKWTYRKLIAVYLKKQLRRNQIFW 410 (412)
Q Consensus 378 ~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~w 410 (412)
+.+..... .++....-|..++.++|.+.+|.-|
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88876433 4677778888888888888777544
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=1.8e-10 Score=98.95 Aligned_cols=281 Identities=11% Similarity=0.019 Sum_probs=144.0
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 040580 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENT 171 (412)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 171 (412)
.|++..|+++..+-.+.+ +.....|..-.++--..|+.+.+-+.+.+..+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 456666666665555554 2223344444555555566666666666554432123333444455555556666666666
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcccHHHHHHHHHH
Q 040580 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE-------GIRAVSFTYLKERKFFMLGEFLRD 244 (412)
Q Consensus 172 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~ 244 (412)
++++.+.+.. ..........+|.+.|++.....+...+.+.|.-.+.. +|+.+++-....+..+.....++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6665554333 34445555566666666666666666666655444332 455555555555555555555555
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHh-CCCCCC
Q 040580 245 VGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH-ESVGPD 323 (412)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~g~~p~ 323 (412)
....... ++..-.+++.-+.+.|+.++|.++.++..+++..|+ -..+-.+.+-++.+.-.+..+.-.+ .+..|
T Consensus 255 ~pr~lr~-~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 255 QPRKLRN-DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred ccHHhhc-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 4333222 124445555555566666666666655555544444 1122234444444444444443322 33333
Q ss_pred HhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHHHHHHH
Q 040580 324 LVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLE 382 (412)
Q Consensus 324 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~ 382 (412)
..+.+|-..|.+.+.+.+|.++++.. ....|+..+|+.+-+++.+ |+..+|.+...+
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaA-l~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAA-LKLRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHH-HhcCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 44455555555666666666666533 1233555556555555555 555555554443
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=2.6e-12 Score=119.95 Aligned_cols=254 Identities=14% Similarity=0.121 Sum_probs=173.5
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 040580 65 QLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144 (412)
Q Consensus 65 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 144 (412)
..+-.+...|+.|+..||..+|.-||..|+++.|- +|.-|.-...+.+...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788889999999999999999999998888 8888888777888888999988888888877665
Q ss_pred CCCCHHhHHHHHHHHHhcCChHH---HHHHHHHHH----HCCCCCChHHHHH--------------HHHHHHhcCCHHHH
Q 040580 145 ADLLPEVYSRAISCFGKQGQLEL---MENTLKEMV----SRGFSVDSATGNA--------------FIIYYSRFGSLTEM 203 (412)
Q Consensus 145 ~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~----~~g~~p~~~~~~~--------------li~~~~~~g~~~~a 203 (412)
.|.+++|..|..+|...||+.. +.+.+.... ..|+.-...-+-. .+.-..-.|.++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6777899999999999888654 222222221 1222111111111 12222233444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc-ccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040580 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKE-RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282 (412)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (412)
.+++..+...... .+... ++.-+... ..+++.......... .++..+|.+.+.+-..+|+.+.|..++.+|++
T Consensus 159 lkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 4444333222111 11111 12222221 223333333333322 45669999999999999999999999999999
Q ss_pred cCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccc
Q 040580 283 AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRL 339 (412)
Q Consensus 283 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 339 (412)
.|++.+.+-|..|+.+ .+...-+..+++-|...|+.|+..|+.-.+-.+...|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999998887 77888889999999999999999999988888877554
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=3.2e-10 Score=106.69 Aligned_cols=320 Identities=11% Similarity=-0.010 Sum_probs=221.9
Q ss_pred CCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 040580 26 PKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102 (412)
Q Consensus 26 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 102 (412)
.|++++|.+++.++.+. +...|.+|...|-+.|+.+++...+-..-... +-|...|..+-....+.|+++.|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 49999999999887753 66789999999999999999888775554432 446788888888888999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH----hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE----VYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 103 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
.+.++.. +++...+---...|-+.|+...|.+-|.++.+...+.+-. .--.++..+...++-+.|.+.++.....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999876 6677776677788889999999999999887654211212 2223466677777778888888877663
Q ss_pred C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------------------------CCCHHHHHHHHHHHH
Q 040580 179 G-FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH---------------------------LIDKEGIRAVSFTYL 230 (412)
Q Consensus 179 g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~li~~~~ 230 (412)
+ -..+...++.++..+.+...++.+............ .++..+ ..+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 2 223556777888888888888888887777665221 222222 11222222
Q ss_pred h--cccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHH
Q 040580 231 K--ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308 (412)
Q Consensus 231 ~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 308 (412)
. .+...++...+-......+.-+...|.-+..+|...|++.+|+.+|..+...-.--+...|--+...|...|..++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 2 23333333333332332243345778888888888888888888888888653334566777788888888888888
Q ss_pred HHHHHHHHhCCCCCC-HhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 309 HLSLEHMKHESVGPD-LVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 309 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
.+.|..... ..|+ ...--+|-..+.+.|+.++|.+.++.+
T Consensus 469 ~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 469 IEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 888887765 2332 233334555567788888888888886
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.7e-10 Score=96.29 Aligned_cols=287 Identities=13% Similarity=0.012 Sum_probs=217.7
Q ss_pred CCChHHHHHHHHHhhccChhhHH---HHHHHHhcCCChhHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHhcCChHHHH
Q 040580 26 PKNGDLARKIIRYRKQEGFVDCA---SLVEDLGRKKKPHLAHQLVNTVKSEGLLPD---NSTLCALMLCYANNGFVLEAQ 99 (412)
Q Consensus 26 ~~~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~ 99 (412)
+.+.++|...|-+|.+.|..++. +|-+.|.+.|..++|+.+-..+..+.--+. ......|.+-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 56789999999999987766655 677889999999999999999886421111 234455777888999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH----hHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE----VYSRAISCFGKQGQLELMENTLKEM 175 (412)
Q Consensus 100 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m 175 (412)
.+|..+.+.| .--.....-|+..|-...+|++|.++-+++...+-.+... .|.-+...+....+++.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999999865 3445678889999999999999999999887654322211 4555666666778999999999998
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchH
Q 040580 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL 255 (412)
Q Consensus 176 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 255 (412)
.+...+ .+..=-.+-+.....|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++...++.++......+ .
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~ 283 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--D 283 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--c
Confidence 886433 2333334567888999999999999999998877678899999999999999999999999987777665 4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHcc---CChhHHHHHHHHHHhC
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM---SMFWDLHLSLEHMKHE 318 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~ 318 (412)
.-..+-..-......+.|...+.+-... +|+...+..+|..-... |...+-..+++.|...
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 4444444444455566676666655544 89999999999987643 4455566667777643
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=4.2e-10 Score=105.92 Aligned_cols=347 Identities=12% Similarity=0.056 Sum_probs=254.2
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHH
Q 040580 53 DLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132 (412)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 132 (412)
.+++ |+.++|..++.+.++.. +.....|.+|...|-+.|+.+++...+-..-... +.|...|..+.....+.|.+++
T Consensus 149 lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 3444 99999999999999874 5578899999999999999999988775555443 6677999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH----HHHHHHHhcCCHHHHHHHHH
Q 040580 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN----AFIIYYSRFGSLTEMETAYG 208 (412)
Q Consensus 133 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~a~~~~~ 208 (412)
|.-.|.+..+.+ +++-..+---+..|-+.|+...|.+.|.++.......|..-+. .+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998765 4555555556778899999999999999998864322333333 34556667777788988888
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC---------------------------CCcchHHHHHH
Q 040580 209 RLKRS-RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR---------------------------KDLGNLLWNLL 260 (412)
Q Consensus 209 ~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l 260 (412)
..... +-..+...++.++..+.+...++.+...+..+.... ..++..+ --+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhH
Confidence 77663 334566788899999999999999988887764411 1111222 122
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcc
Q 040580 261 LLSYAGNFKMKSLQREFMRMSEAGFHP--DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338 (412)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 338 (412)
+-++...+..+....+.....+..+.| +...|.-+..+|.+.|++.+|+.++..+......-+...|--+.++|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 334444444445555556666665444 356788899999999999999999999987655556888999999999999
Q ss_pred ccchHHHHHHhc-cCCCCCCcccHH-HHHHHHhc-CCcccHHHHHHHhccCc------------hHHHHHHHHHHHHcCc
Q 040580 339 LGRNLDFGLSKM-NLDDSPVVSTDP-YVFEAFGK-GDFHSSSEAFLEFKRQR------------KWTYRKLIAVYLKKQL 403 (412)
Q Consensus 339 ~~~~a~~~~~~m-~~~~~p~~~~~~-~li~~~~~-~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~g~ 403 (412)
..++|.+.|+.. ... |+..--. .|-..+.+ |+.++|.+.+..+..|| ...-......|.+.|+
T Consensus 464 e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 999999999998 322 2221111 22233444 99999999999876544 3344556667777777
Q ss_pred ccc
Q 040580 404 RRN 406 (412)
Q Consensus 404 ~~~ 406 (412)
.++
T Consensus 542 ~E~ 544 (895)
T KOG2076|consen 542 REE 544 (895)
T ss_pred HHH
Confidence 665
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.1e-10 Score=110.58 Aligned_cols=386 Identities=10% Similarity=0.025 Sum_probs=249.8
Q ss_pred hccccccccccCCCChHHHHHHHHHhhccC------hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHH--hHHHH
Q 040580 14 FKRFNVPSHQTHPKNGDLARKIIRYRKQEG------FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS--TLCAL 85 (412)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l 85 (412)
...+.|...|.-.|+++.+..+.+.+...+ ..+|..+.+++-..|++++|...|-+..+. .|+.. .+.-|
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGL 348 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccch
Confidence 344566667777888888888777766542 335777888888888888888888776654 34443 34457
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC----CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 040580 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG----CFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 161 (412)
.+.+.+.|+++.+...|+.+.+.. +-+..|...|...|...+ ..+.|..++.+..+.. +.+...|-.+...+..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 788888888888888888888763 556677777777777665 4566666666665443 4455566666666555
Q ss_pred cCChHHHHHHHHH----HHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHH
Q 040580 162 QGQLELMENTLKE----MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS---RHLIDK------EGIRAVSFT 228 (412)
Q Consensus 162 ~g~~~~a~~~~~~----m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~ 228 (412)
.. ...++.+|.. |...+-.+.....|.+...+...|+++.|...|...... ...++. .+--.+...
T Consensus 427 ~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 43 3333666654 344555567788888888888888888888888877654 122222 122223334
Q ss_pred HHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHH
Q 040580 229 YLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDL 308 (412)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 308 (412)
+-..++++.|.+.+..+....+.. ...|--+...--..+...+|...+++..+.. ..|...++.+-..+.+...+..|
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~Y-Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGY-IDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchh-HHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccc
Confidence 444568888888888876666542 2333333322233467788888888877432 22333444455577777777777
Q ss_pred HHHHHHHHhC-CCCCCHhhHHHHHHHHHh------------ccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc-CCc
Q 040580 309 HLSLEHMKHE-SVGPDLVTYGCVVDAYLD------------KRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-GDF 373 (412)
Q Consensus 309 ~~~~~~m~~~-g~~p~~~~~~~li~~~~~------------~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-~~~ 373 (412)
.+-|....+. ...+|....-+|-+.|.. .+..++|.+.|.+. +..+ -|...-|-+--.++. |++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCc
Confidence 7766655442 233676666666664443 23445667777766 3332 233322222223444 999
Q ss_pred ccHHHHHHHhcc---CchHHHHHHHHHHHHcCccccc
Q 040580 374 HSSSEAFLEFKR---QRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 374 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 407 (412)
.+|..+|.+.++ .+..+|..+.++|..+|.|..|
T Consensus 663 ~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 663 SEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred hHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHH
Confidence 999999999887 4779999999999999999887
No 42
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=1.7e-13 Score=85.00 Aligned_cols=49 Identities=22% Similarity=0.443 Sum_probs=27.4
Q ss_pred CcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 040580 287 PDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335 (412)
Q Consensus 287 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 335 (412)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.5e-10 Score=99.46 Aligned_cols=356 Identities=10% Similarity=0.006 Sum_probs=233.0
Q ss_pred ccccccccCCCChHHHHHHHHHhhc--cChhh-HHHHHHHHhcCCChhHHHHHHHHHHhcCCCC------------CHHh
Q 040580 17 FNVPSHQTHPKNGDLARKIIRYRKQ--EGFVD-CASLVEDLGRKKKPHLAHQLVNTVKSEGLLP------------DNST 81 (412)
Q Consensus 17 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------------~~~~ 81 (412)
+.+...+.+.|.+++|+..|+...+ |+..+ +|.+| ++..-|+-++..+.|.+|+.....| +...
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 4555678889999999999887654 55554 45444 4445678888888888887543222 2222
Q ss_pred HHHHH-----HHHHhcC--ChHHHHHHHHHHHhCCCCcCHH-------------HHH--------HHHHHHHccCCHHHH
Q 040580 82 LCALM-----LCYANNG--FVLEAQVVWEELLSSSFVLSVQ-------------VLS--------DLMDAYGRIGCFNEI 133 (412)
Q Consensus 82 ~~~ll-----~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~-------------~~~--------~li~~~~~~~~~~~a 133 (412)
.+..| .-..+.+ +.+++.-.-..++.--+.|+-. .+. .-..-+.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 22222 1111111 1122221111222111222210 000 111236688999999
Q ss_pred HHHHHHHhhcCCCCCHH-------------------------------hHHHHH-----HHHHhcCChHHHHHHHHHHHH
Q 040580 134 ISIIDQVSCRNADLLPE-------------------------------VYSRAI-----SCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 134 ~~~~~~m~~~~~~~~~~-------------------------------~~~~li-----~~~~~~g~~~~a~~~~~~m~~ 177 (412)
.+++.-....+-..-.. -||.-. +....+|++++|.+.+++...
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 98888776544221111 111110 111245889999999999887
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHH
Q 040580 178 RGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW 257 (412)
Q Consensus 178 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 257 (412)
..-......|++= -.+-..|++++|.+.|-.+... +.-+..+.-.+...|-...+..+|.+++.+....-++ |+...
T Consensus 519 ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~-dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN-DPAIL 595 (840)
T ss_pred CchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC-CHHHH
Confidence 6433333334432 3466789999999999776532 1346778888888899999999999999886544333 55889
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-h
Q 040580 258 NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL-D 336 (412)
Q Consensus 258 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~ 336 (412)
.-|...|-+.|+-..|.+.+-+--. -++-|..|...|..-|....-+++++.+|++. .=++|+..-|..+|..|. +
T Consensus 596 skl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHh
Confidence 9999999999999999887655432 24557888888888899998999999999875 348899999999888776 5
Q ss_pred ccccchHHHHHHhccCCCCCCcccHHHHHHHHhcCCcccHHHH
Q 040580 337 KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEA 379 (412)
Q Consensus 337 ~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~~~~~a~~~ 379 (412)
.|++.+|.++++.+.....-|+.+...|++.++.-+..++.+.
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key 715 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEY 715 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHH
Confidence 8999999999999977777788888888888877444444333
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.4e-10 Score=96.86 Aligned_cols=281 Identities=10% Similarity=0.040 Sum_probs=192.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CChHHHHHHHHHHHhc
Q 040580 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS--VDSATGNAFIIYYSRF 197 (412)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~ 197 (412)
+..++-...+.+++.+-.+.....|++.++..-+....+.-...++++|+.+|+++.++..- -|..+|+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34555566677777777777777776555554455555556778888999999888887321 1667888777554433
Q ss_pred CCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHH
Q 040580 198 GSLTE-METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276 (412)
Q Consensus 198 g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 276 (412)
..+.- |..++ .+- +--+.|...+.+-|+-.++.++|...|++.-.-.+.. ..+|+.|..-|....+...|++-
T Consensus 313 skLs~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~-~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY-LSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHHHhcccHHHHHH
Confidence 32222 22222 111 2344577777778888888888888888754444432 47888888888888888889888
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhccccchHHHHHHhccCCCC
Q 040580 277 FMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP-DLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDS 355 (412)
Q Consensus 277 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 355 (412)
+++..+-. +-|-..|-.|-++|.-.+...=|+-+|++... ++| |...|.+|-++|.+.++.++|.+-|...-...+
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 88888653 44677888888888888888888888887665 455 788888898999888888888888888732222
Q ss_pred CCcccHHHHHHHHhc-CCcccHHHHHHHhcc-------Cch---HHHHHHHHHHHHcCccccccc
Q 040580 356 PVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR-------QRK---WTYRKLIAVYLKKQLRRNQIF 409 (412)
Q Consensus 356 p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~-------~~~---~~~~~l~~~~~~~g~~~~a~~ 409 (412)
.+...+..|-+.|.+ ++..+|...+.+... .+. ....-|..-+.+.+++++|.+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 344556677777877 888888777765322 222 222335666777888888854
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.4e-09 Score=95.08 Aligned_cols=288 Identities=14% Similarity=0.033 Sum_probs=188.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC---CHHhHHHHHHHHHhc
Q 040580 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL---LPEVYSRAISCFGKQ 162 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~ 162 (412)
..++-.....+++.+=.+.....|++-+...-+-...+.-...|+|+|+.+|+++.+.+ +- +.++|+.++- +++
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LY--v~~ 310 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLY--VKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHH--HHh
Confidence 34455556777777777778888876666655555666667788899999999887654 22 2347776653 332
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHH
Q 040580 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242 (412)
Q Consensus 163 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 242 (412)
.+-. +..+.+-...--+--..|+.++.+-|+-.++.++|...|+...+.+ +.....|+.+-+-|...++...|.+-+
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2221 2222222111112234567777788888888888888888887765 234567777888888888888888888
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 040580 243 RDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP-DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321 (412)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 321 (412)
+....-.+. |-.+|-.|.++|.-.+.+.-|+-.|++..+. +| |...|..|-..|.+.++.++|++.|......|-.
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 764333222 4478888888888888888888888887765 45 4778888888888888888888888887765543
Q ss_pred CCHhhHHHHHHHHHhccccchHHHHHHhc-cC----CCCCCcccHHHHH--HHHhc-CCcccHHHHHHHh
Q 040580 322 PDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NL----DDSPVVSTDPYVF--EAFGK-GDFHSSSEAFLEF 383 (412)
Q Consensus 322 p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~----~~~p~~~~~~~li--~~~~~-~~~~~a~~~~~~~ 383 (412)
+...+..|.+.|-+.++..+|...+++. .. +..-+......++ ..+.+ +++++|.......
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 5567778888888888888888777665 21 2211111122222 22344 7777776655443
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=1.2e-10 Score=106.10 Aligned_cols=283 Identities=11% Similarity=0.032 Sum_probs=176.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHccCCHHHHHHH
Q 040580 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS--FVLSVQVLSDLMDAYGRIGCFNEIISI 136 (412)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~ 136 (412)
+.++|+.+|....++ +.-+......+.++|-..+++++|+++|+.+.+.. ..-+.++|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 357777788775554 23334555667778888888888888888887643 122566777776554322 12222
Q ss_pred H-HHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040580 137 I-DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 137 ~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 214 (412)
+ +++.+.+ +-.|.+|-++-++|.-+++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 2 2232222 556778888888888888888888888887773 45 567777777777777888888888877653
Q ss_pred CCCCHHHHHH---HHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhH
Q 040580 215 HLIDKEGIRA---VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTT 291 (412)
Q Consensus 215 ~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 291 (412)
.|+..|++ +.-.|.|.++++.|+-.|++...-.+. +.+....+...+-+.|+.++|++++++..... +-|+..
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~ 559 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLC 559 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchh
Confidence 44444444 445566777777777777665444333 34566666666677777777777777766442 223333
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhccccchHHHHHHhc-cCCCCCC
Q 040580 292 FNIRAVAFSRMSMFWDLHLSLEHMKHESVGP-DLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPV 357 (412)
Q Consensus 292 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~p~ 357 (412)
--.....+...++.++|+..++++++ +.| +...+..+.+.|-+.|+.+.|..-|--+ ..++++.
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 33444555556667777777777665 344 3445555666666677776666666555 4444433
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=6.5e-13 Score=82.39 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=22.8
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 040580 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125 (412)
Q Consensus 77 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 125 (412)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=1.8e-10 Score=105.05 Aligned_cols=281 Identities=10% Similarity=-0.023 Sum_probs=212.7
Q ss_pred ChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHhcCChHHHHHHH
Q 040580 28 NGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGL--LPDNSTLCALMLCYANNGFVLEAQVVW 102 (412)
Q Consensus 28 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~ 102 (412)
+..+|...|+.++.. .......+.++|-..+++++|..+|+...+... .-+.+.|.+.+--+-+ .++. --+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--~v~L-s~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--EVAL-SYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--hHHH-HHHH
Confidence 466788888886653 335566788899999999999999999987521 1267788887754322 1111 1223
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040580 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182 (412)
Q Consensus 103 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 182 (412)
+.+.+.. +-...+|-++.++|+-.++.+.|++.|++..+.+ +-...+|+.+-.-+....++|.|...|+.... .
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~ 484 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG----V 484 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc----C
Confidence 3344433 5567899999999999999999999999996543 22445888888888889999999999988765 3
Q ss_pred ChHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH-hcCCCCcchHHHH
Q 040580 183 DSATGNA---FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV-GLGRKDLGNLLWN 258 (412)
Q Consensus 183 ~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~ 258 (412)
|...|++ +...|.+.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.|+|.+++++. ...+.+| ..--
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~--l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP--LCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc--hhHH
Confidence 5555554 5667889999999999999998766 335667777788889999999999999985 4444444 5555
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC
Q 040580 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322 (412)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 322 (412)
.....+...++.++|++.++++++. .|+ ...|..+...|-+.|+.+.|..-|.-+.+...++
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 5667778889999999999999975 666 5667788889999999999998888877644443
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=3.7e-10 Score=108.15 Aligned_cols=214 Identities=7% Similarity=-0.082 Sum_probs=103.2
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH---------ccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 040580 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG---------RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164 (412)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 164 (412)
+.++|...|++..+.. +-+...|..+..++. ..+++++|...+++..+.+ +-++..+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 3555555555555543 223334444433332 1223555666666555443 3344455555555555566
Q ss_pred hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 040580 165 LELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243 (412)
Q Consensus 165 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 243 (412)
+++|...|++..+.+ | +...+..+...+...|++++|...++...+.... +...+..+...+...|++++|.+.++
T Consensus 354 ~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 666666666555542 3 2334444555555566666666666665554322 11222223333444555666666555
Q ss_pred HHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHh-HHHHHHHHHHccCChhHHHHHHHHHH
Q 040580 244 DVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT-TFNIRAVAFSRMSMFWDLHLSLEHMK 316 (412)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~ 316 (412)
+.....++-+...+..+..++...|+.++|...+.++... .|+.. ..+.+...++..| +++...++.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 5432211111244555556666666666666666665433 33322 2233333445554 35555555544
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=4.8e-10 Score=95.22 Aligned_cols=131 Identities=13% Similarity=0.077 Sum_probs=61.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (412)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.++..+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555554432 2334445555555555555555555555554432 22333444445555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040580 160 GKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 212 (412)
...|++++|...+++.......| ....+..+...+...|++++|...++...+
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554421111 122333344444444555555555544443
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=4.3e-10 Score=95.54 Aligned_cols=199 Identities=12% Similarity=0.037 Sum_probs=157.6
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...+.+ +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34567788889999999999999999998763 3457788889999999999999999999998875 556778888999
Q ss_pred HHHccCCHHHHHHHHHHHhhcCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNA-DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 201 (412)
.+...|++++|.+.+++...... +..+..+..+...+...|++++|...+.+..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999876432 223457777888899999999999999998876322 4567778888899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 040580 202 EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245 (412)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 245 (412)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999988776 2344555555566666666666666655543
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=3.5e-11 Score=112.59 Aligned_cols=248 Identities=12% Similarity=0.025 Sum_probs=180.2
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 040580 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179 (412)
Q Consensus 100 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 179 (412)
.++..+...|+.|+.+||..+|.-||..|+.+.|- +|.-|+.++.+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 9999998988888889999999999999888776
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCH--------------HHHHHHHHHHHhcccHHHH
Q 040580 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR-------SRHLIDK--------------EGIRAVSFTYLKERKFFML 238 (412)
Q Consensus 180 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~--------------~~~~~li~~~~~~~~~~~a 238 (412)
.|...||..|..+|...||+..-..+-+.|.. .|+.... .--...+.-....|.++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 68889999999999999987653333222321 2221100 1112233334445667777
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 040580 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNF-KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
.+++..+.....+..... ++.-+.... .+++.....+...+ .|+..+|.+++.+-.-.|+.+.|..++.+|++
T Consensus 159 lkll~~~Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 777766544433321111 244444333 33333333333332 59999999999999999999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHHhccccchHHHHHHhc-cCCCCCCcccHHHHHHHH
Q 040580 318 ESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAF 368 (412)
Q Consensus 318 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~ 368 (412)
.|+..+..-|-.|+-+ .++..-+..+++.| ..|+.|+..|+..-+-.+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhh
Confidence 9999888777777655 67777788888888 889999999986544433
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=7.2e-10 Score=106.14 Aligned_cols=247 Identities=13% Similarity=0.034 Sum_probs=176.7
Q ss_pred hHHHHHHHHHHhcCCCCC-HHhHHHHHHHHH---------hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCH
Q 040580 61 HLAHQLVNTVKSEGLLPD-NSTLCALMLCYA---------NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130 (412)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 130 (412)
++|.++|++..+. .|+ ...|..+..++. ..+++++|...+++..+.+ +-+...+..+...+...|++
T Consensus 278 ~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 278 QQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 7899999988875 454 445555554433 2345889999999999876 56788888888899999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 040580 131 NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS-ATGNAFIIYYSRFGSLTEMETAYGR 209 (412)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~ 209 (412)
++|...|++..+.+ +.++..+..+...+...|++++|+..+++..+.. |+. ..+..++..+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999998765 5567788888899999999999999999998864 432 2233344456678999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHc-CCCCc
Q 040580 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA-GFHPD 288 (412)
Q Consensus 210 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~ 288 (412)
..+...+-++..+..+..++...|++++|...+.++....+. +....+.+...|+..| ++|...++.+.+. .-.|.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 876543335566777888888999999999999886554443 3456677777778877 4777777776632 22343
Q ss_pred HhHHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 040580 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319 (412)
Q Consensus 289 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 319 (412)
...+..++ +.-.|+-+.+..+ +++.+.|
T Consensus 509 ~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 509 NPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred CchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 33333333 4445555555544 7776643
No 54
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.32 E-value=1e-07 Score=87.21 Aligned_cols=354 Identities=8% Similarity=-0.070 Sum_probs=197.5
Q ss_pred hccccccccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 040580 14 FKRFNVPSHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90 (412)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 90 (412)
..++.-...|.+.+.++-|+.+|....+ .+...|......=-..|..+.-..+|++.... ++-....|-.....+-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHH
Confidence 3444445556666666666666665543 24445555555555566666666666666654 2223333433444455
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 040580 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMEN 170 (412)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 170 (412)
..|++..|..++....+.. +-+...|-+-+..-....+++.|..+|.+... ..+++.+|..-+..---.++.++|++
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 5677777777776666654 33556666666666777777777777766643 34555566665555556666777777
Q ss_pred HHHHHHHCCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC
Q 040580 171 TLKEMVSRGFSVDS-ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249 (412)
Q Consensus 171 ~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 249 (412)
++++..+. -|+- ..|-.+-..+-+.++.+.|...|..=.+ .++..+..|-.|...=-+.|.+-+|..++++.....
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 77666653 3433 3444555566666666666666644222 123344556666665566666667777777665555
Q ss_pred CCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 040580 250 KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGC 329 (412)
Q Consensus 250 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 329 (412)
++ |...|-..|..=.+.|+.+.|..+..+..+. ++.+...|..-|....+.++-.+....++ + ..-|+...-+
T Consensus 750 Pk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk---k--ce~dphVlla 822 (913)
T KOG0495|consen 750 PK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK---K--CEHDPHVLLA 822 (913)
T ss_pred CC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH---h--ccCCchhHHH
Confidence 54 3466667777777777777776666665543 23334455555555444444322222222 2 3335555555
Q ss_pred HHHHHHhccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHH
Q 040580 330 VVDAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLE 382 (412)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~ 382 (412)
+...+.....++.+.+.|... +.++ -+--+|.-++..+.. |.-++-.+++..
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666666667777777666 3322 122234444444444 544444444443
No 55
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=1.1e-07 Score=83.74 Aligned_cols=125 Identities=9% Similarity=0.039 Sum_probs=72.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHH
Q 040580 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFG 346 (412)
Q Consensus 267 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 346 (412)
+.++..|.+++.... |.-|-..+|-..|..-.+.++++.+..+++..+..+.. +..+|......-...|+.+++..+
T Consensus 417 q~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 417 QLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred HcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHH
Confidence 344444444444433 44566666666666666667777777777777664422 556666655555567777777777
Q ss_pred HHhccCCCCCCcccHHHHHHHHhc-----CCcccHHHHHHHhcc--CchHHHHHHHH
Q 040580 347 LSKMNLDDSPVVSTDPYVFEAFGK-----GDFHSSSEAFLEFKR--QRKWTYRKLIA 396 (412)
Q Consensus 347 ~~~m~~~~~p~~~~~~~li~~~~~-----~~~~~a~~~~~~~~~--~~~~~~~~l~~ 396 (412)
|+..-.. |...+=..|+.+|.. |.+..|..++.++.. +...+|.+...
T Consensus 494 felAi~q--p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 494 FELAISQ--PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred HHHHhcC--cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 7766221 333333455666532 667777777776554 44455655544
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=7.6e-09 Score=90.45 Aligned_cols=378 Identities=11% Similarity=0.022 Sum_probs=232.1
Q ss_pred cccccccCCCChHHHHHHHHHhhc--c------ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 040580 18 NVPSHQTHPKNGDLARKIIRYRKQ--E------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89 (412)
Q Consensus 18 ~l~~~~~~~~~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 89 (412)
.+...+.+...+.+|++.++.... | -....+.+--.+.+.|.+++|+..|+...+. .|+..+--.|+-++
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~ 319 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICA 319 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhh
Confidence 455678888899999998876432 2 2233555556778999999999999998875 68876644455555
Q ss_pred HhcCChHHHHHHHHHHHhCCC------------CcCHHHHHHHHH-----HHHccCC--HHHHHHHHHHHhhcCCCCCHH
Q 040580 90 ANNGFVLEAQVVWEELLSSSF------------VLSVQVLSDLMD-----AYGRIGC--FNEIISIIDQVSCRNADLLPE 150 (412)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~------------~~~~~~~~~li~-----~~~~~~~--~~~a~~~~~~m~~~~~~~~~~ 150 (412)
-.-|+.++..+.|..|+.... .|+....|.-|. -.-+.+. .+++.-.-.++...-+.|+-.
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 667899999999999986322 233333332222 1212111 111111111111111111110
Q ss_pred -------------hHH--------HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH--HHH--------------
Q 040580 151 -------------VYS--------RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF--IIY-------------- 193 (412)
Q Consensus 151 -------------~~~--------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--i~~-------------- 193 (412)
.+. .-...+.++|+++.|+++++-+.+..-+.-...-+.| +.-
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 000 1123467899999999999887654322111111111 100
Q ss_pred --------------------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcc
Q 040580 194 --------------------YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253 (412)
Q Consensus 194 --------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 253 (412)
....|++++|...+++.......-....||. --.+-+.|++++|.+.|-++..--.+ +
T Consensus 480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~n-n 557 (840)
T KOG2003|consen 480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLN-N 557 (840)
T ss_pred HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHh-h
Confidence 0124778888888887775432222222222 22345678888888887765322221 2
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 040580 254 NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP-DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332 (412)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 332 (412)
......+...|-...++..|++++-+.. .+.| |....+-|...|-+.|+-..|+..+-+-- +-++.+..|...|..
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~--slip~dp~ilskl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~a 634 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAA 634 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHH
Confidence 3455566677777778888888776554 3345 46777888888999998888887654422 234557888888888
Q ss_pred HHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHhc--CCcccHHHHHHHhcc---CchHHHHHHHHHHHHcCc
Q 040580 333 AYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK--GDFHSSSEAFLEFKR---QRKWTYRKLIAVYLKKQL 403 (412)
Q Consensus 333 ~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~--~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 403 (412)
.|...+-++++..+|++... ..|+..-|..+|..|-+ |++++|.+.+.+... .|......|...+...|.
T Consensus 635 yyidtqf~ekai~y~ekaal-iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL-IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 88888888889888888732 45888899999987744 999999999987655 456666666665554443
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=7.4e-10 Score=92.70 Aligned_cols=228 Identities=13% Similarity=0.013 Sum_probs=144.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHH-HHHHHHHh
Q 040580 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS-RAISCFGK 161 (412)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~ 161 (412)
+.+.++|.+.|.+.+|...++.-++. .|-+.||-.|-++|.+..++..|+.+|.+-.+. .|...||- -+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 34566666777777777766666654 455566666667777777777777777666543 23333333 34555666
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHH
Q 040580 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241 (412)
Q Consensus 162 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 241 (412)
.++.++|.++++...+... .++....++...|.-.++++.|.+.++.+.+-|+. ++..|+.+.-.|.-.+++|-+.-.
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 6677777777776665421 14445555556666667777777777777776643 566666666666666666666665
Q ss_pred HHHHhcCC--CCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 040580 242 LRDVGLGR--KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 242 ~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
|.+....- +..-...|-.+-...+..|++..|.+.|+-..... .-+...++.|.-.-.+.|++++|..++....+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 55532221 22223667777777777888888888888776542 22356777777777788888888888877654
No 58
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.27 E-value=3.4e-07 Score=83.93 Aligned_cols=380 Identities=7% Similarity=-0.011 Sum_probs=205.2
Q ss_pred ccccccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHH----HhcCCCCCHHhHHHHHHHH
Q 040580 17 FNVPSHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTV----KSEGLLPDNSTLCALMLCY 89 (412)
Q Consensus 17 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~ 89 (412)
..|.-+|++..-++.|.+++...++ .+...|-+....=-.+|+.+...+++++- ...|+..+...|-.=...|
T Consensus 410 ~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 410 MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3445567777778888888877665 36666766666666677777776666553 3345555554444444444
Q ss_pred HhcCChHHHHHHHHHHHhCCC------------------------------------CcCHHHHHHHHHHHHccCCHHHH
Q 040580 90 ANNGFVLEAQVVWEELLSSSF------------------------------------VLSVQVLSDLMDAYGRIGCFNEI 133 (412)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~------------------------------------~~~~~~~~~li~~~~~~~~~~~a 133 (412)
-..|.+-.+..+....+..|+ +.+...|......=-..|..+..
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 444444444444444333332 23334444444333344445555
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040580 134 ISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 134 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
..+|++.... .+-.+..|-.....+-..|++..|..++.+..+.... +...|-.-+..-.....++.|+.+|.+....
T Consensus 570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 5555555433 2333335555555555666666666666666554322 4455555566666666666666666665543
Q ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-HhHH
Q 040580 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD-LTTF 292 (412)
Q Consensus 214 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~ 292 (412)
.|+..+|.--+...--.+..++|.+++++.-...+.. ...|-.+.+.+-+.++.+.|...|..-.+. -|+ .-.|
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f-~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLW 722 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF-HKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLW 722 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch-HHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHH
Confidence 3555555555555555566666666665543333321 134444555555555555555555443322 344 3344
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHH--------
Q 040580 293 NIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYV-------- 364 (412)
Q Consensus 293 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~l-------- 364 (412)
-.|...--+.|++-+|..++++..-.+. -+...|-..|+.-.+.|..+.|..++.+.-+.+.-+...|.--
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 4444455566677777777777654433 2666777777777777777777666544422221122222111
Q ss_pred -----HHHH------------------hcCCcccHHHHHHHhcc---CchHHHHHHHHHHHHcCcc
Q 040580 365 -----FEAF------------------GKGDFHSSSEAFLEFKR---QRKWTYRKLIAVYLKKQLR 404 (412)
Q Consensus 365 -----i~~~------------------~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 404 (412)
++++ ....+++|.+.|.+-.. .+..+|.-+..-+.+.|.-
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCH
Confidence 2222 22444455555555333 4567777777777777743
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=3.2e-08 Score=92.07 Aligned_cols=290 Identities=12% Similarity=0.024 Sum_probs=174.2
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc----
Q 040580 52 EDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI---- 127 (412)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 127 (412)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3446778888888888664433 33334445667777788888888888888888875 34444445555544222
Q ss_pred -CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 040580 128 -GCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL-ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205 (412)
Q Consensus 128 -~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 205 (412)
.+.+...++++++...- |.....-.+.-.+.....+ ..+...+..+..+|+++ +|+.|-..|......+-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 24666777777775543 2222222222222221122 24445556666777643 45556555665555555555
Q ss_pred HHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 040580 206 AYGRLKRS----R----------HLIDKE--GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269 (412)
Q Consensus 206 ~~~~~~~~----~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 269 (412)
++...... + -.|+.. ++.-+.+.|-..|++++|.+.+++.-...|.. +..|..-...|-..|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-VELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHCCC
Confidence 55554322 1 123332 34555666777888888888888654444332 4677777788888888
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhH--------HHHHHHHHhccccc
Q 040580 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY--------GCVVDAYLDKRLGR 341 (412)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--------~~li~~~~~~~~~~ 341 (412)
+.+|....+..++.. .-|...-+-....+.+.|++++|.+++....+.+..|..... .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 888888888877654 335556666777778888888888888877666654432221 23355777788887
Q ss_pred hHHHHHHhc
Q 040580 342 NLDFGLSKM 350 (412)
Q Consensus 342 ~a~~~~~~m 350 (412)
.|.+-|..+
T Consensus 323 ~ALk~~~~v 331 (517)
T PF12569_consen 323 LALKRFHAV 331 (517)
T ss_pred HHHHHHHHH
Confidence 777666554
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=3.8e-08 Score=91.60 Aligned_cols=287 Identities=9% Similarity=-0.015 Sum_probs=202.6
Q ss_pred ccccCCCChHHHHHHHHHhhcc--Chh-hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHH-h-----
Q 040580 21 SHQTHPKNGDLARKIIRYRKQE--GFV-DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA-N----- 91 (412)
Q Consensus 21 ~~~~~~~~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~----- 91 (412)
..+...|++++|+..++..... |.. ........+.+.|+.++|..+|..+...+ |+...|...+..+. -
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 4567889999999999876553 444 45566778899999999999999999974 66666555444443 2
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHH-HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 040580 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN-EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMEN 170 (412)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 170 (412)
..+.+...++|+++...- |.......+.-.+..-..+. .+...+..+..+|++ .+|+.|-..|.......-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 235788889999887653 44333333322232222332 355666777778873 688888888887766666677
Q ss_pred HHHHHHHC----C----------CCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 040580 171 TLKEMVSR----G----------FSVDS--ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234 (412)
Q Consensus 171 ~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (412)
++..+... | -.|+. .++..+...|...|++++|...++..+++. +..+..|..-...|-..|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 77766532 1 12333 244556677889999999999999998874 2247788888999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHH--------HHHHHHHHccCChh
Q 040580 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF--------NIRAVAFSRMSMFW 306 (412)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--------~~ll~~~~~~g~~~ 306 (412)
+.+|.+.++..+.-... |...-+-....+.++|+.++|..++......+..|-...+ .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999987554443 4566677788889999999999999988876654433222 34556788999988
Q ss_pred HHHHHHHHHH
Q 040580 307 DLHLSLEHMK 316 (412)
Q Consensus 307 ~a~~~~~~m~ 316 (412)
.|++.|....
T Consensus 323 ~ALk~~~~v~ 332 (517)
T PF12569_consen 323 LALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHH
Confidence 8877665543
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.2e-07 Score=83.94 Aligned_cols=355 Identities=10% Similarity=0.007 Sum_probs=222.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHH
Q 040580 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD-NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS-VQVLSDLMDAY 124 (412)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~ 124 (412)
+.....-|-++|++++|++.|.+.++. .|| +..|...--+|...|+|+++.+--...++. .|+ +..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 344455667788888888888888874 677 667777777888888888877766666554 333 33444444444
Q ss_pred HccCCHHHH----------------------HHHHHH---------Hhhc--CCCCCHHhHHHHHHHHHhc--------C
Q 040580 125 GRIGCFNEI----------------------ISIIDQ---------VSCR--NADLLPEVYSRAISCFGKQ--------G 163 (412)
Q Consensus 125 ~~~~~~~~a----------------------~~~~~~---------m~~~--~~~~~~~~~~~li~~~~~~--------g 163 (412)
-..|++++| .+++++ +.+. .+.|++...++....|... +
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 444544443 222221 1111 1234444434433333210 0
Q ss_pred --------------------ChHHHHHHHHHHHH-CCCCCChH---------HHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 040580 164 --------------------QLELMENTLKEMVS-RGFSVDSA---------TGNAFIIY--YSRFGSLTEMETAYGRLK 211 (412)
Q Consensus 164 --------------------~~~~a~~~~~~m~~-~g~~p~~~---------~~~~li~~--~~~~g~~~~a~~~~~~~~ 211 (412)
.+..|.+.+.+-.. .-..++.- .-..++.+ +.-.|+.-.+..-|+..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 12222222221110 00111111 11111111 223577788888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-Hh
Q 040580 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD-LT 290 (412)
Q Consensus 212 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~ 290 (412)
+....+ ...|.-+..+|....+.++....|.+...-.+. |+.+|..=...+.-.+++++|..=|++.... .|+ ..
T Consensus 354 ~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~ 429 (606)
T KOG0547|consen 354 KLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAY 429 (606)
T ss_pred hcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhH
Confidence 765333 233777888899999999999988876443333 3477887778888888999999999988754 454 56
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc-cCCCCC-----Cccc--HH
Q 040580 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSP-----VVST--DP 362 (412)
Q Consensus 291 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~p-----~~~~--~~ 362 (412)
.|-.+-.+.-+.++++++...|++.+++ ++-.+..|+.....+...++++.|.+.|+.. .....- +..+ ..
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 6777777777889999999999997653 5556788999999999999999999999886 433221 1111 11
Q ss_pred HHHHHHhcCCcccHHHHHHHhcc---CchHHHHHHHHHHHHcCccccc-ccc
Q 040580 363 YVFEAFGKGDFHSSSEAFLEFKR---QRKWTYRKLIAVYLKKQLRRNQ-IFW 410 (412)
Q Consensus 363 ~li~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a-~~w 410 (412)
.++..=-++++..|.+++.+-.+ +....|.+|...-.++|+.++| +++
T Consensus 509 a~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 509 ALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred hHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 11111133888999999987655 4566799999999999999998 444
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=1.4e-08 Score=93.31 Aligned_cols=242 Identities=18% Similarity=0.125 Sum_probs=139.3
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhc-----C-CCCCHHh-HHHHHHHHHhcCChHHHHHHHHHHHh-----CC--CC
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSE-----G-LLPDNST-LCALMLCYANNGFVLEAQVVWEELLS-----SS--FV 111 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~--~~ 111 (412)
+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+.+.. .| .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555888888999999999998887654 2 1233333 33466677788888888888888764 12 12
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHhh---cCC-CCCHH---hHHHHHHHHHhcCChHHHHHHHHHHHHC---CCC
Q 040580 112 LSVQVLSDLMDAYGRIGCFNEIISIIDQVSC---RNA-DLLPE---VYSRAISCFGKQGQLELMENTLKEMVSR---GFS 181 (412)
Q Consensus 112 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~-~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~ 181 (412)
--..+++.|..+|.+.|++++|...+++..+ .-. ...+. .++.+...++..+++++|..++....+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2346677777888888888877777665432 100 11111 5566677777777888877777755331 122
Q ss_pred CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHH
Q 040580 182 VD----SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW 257 (412)
Q Consensus 182 p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 257 (412)
++ ..+++.|-..|-..|++++|+++++...+..- +............+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~----------------------------~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR----------------------------ELLGKKDYGVGKPL 412 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH----------------------------hcccCcChhhhHHH
Confidence 22 24566777777777777777777766654210 00000000012344
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHH----HcCC-CCc-HhHHHHHHHHHHccCChhHHHHHHHHH
Q 040580 258 NLLLLSYAGNFKMKSLQREFMRMS----EAGF-HPD-LTTFNIRAVAFSRMSMFWDLHLSLEHM 315 (412)
Q Consensus 258 ~~li~~~~~~g~~~~a~~~~~~m~----~~~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m 315 (412)
+.|..+|.+.++.++|.++|.+-. ..|. .|+ ..+|..|...|...|+++.|.++.+..
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 455555555555555555554422 1221 122 345556666666666666666665544
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=9.8e-10 Score=91.98 Aligned_cols=233 Identities=12% Similarity=0.037 Sum_probs=181.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 040580 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127 (412)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 127 (412)
+.+.++|.+.|-+.+|.+-|+.-.+. .|-+.||-.|-++|.+..+++.|+.++.+-++. ++-|+.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 46778888888888888888887765 677788888888888888888888888888765 355555566677788888
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 040580 128 GCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207 (412)
Q Consensus 128 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 207 (412)
++.++|.++++...+.. +.+.+....+..+|.-.++++.|+..++++.+.|+. +...|+.+--+|.-.+++|.+..-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888887654 455567777777888888889999999888888876 6777888877888888888888888
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 040580 208 GRLKRSRHLID--KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285 (412)
Q Consensus 208 ~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 285 (412)
......--.|+ ..+|-.+-......|++.-|.+.|+-.-....+ ...++|.|...-.+.|+++.|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~-- 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV-- 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--
Confidence 88776554444 346777777777888888888888865444443 4588888888888999999999998887754
Q ss_pred CCc
Q 040580 286 HPD 288 (412)
Q Consensus 286 ~p~ 288 (412)
.|+
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 555
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=6.6e-08 Score=89.03 Aligned_cols=236 Identities=14% Similarity=0.090 Sum_probs=159.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhc-----CCCCCHH---hHHHHHHHHHhcCChHHHHHHHHHHHHC-----C
Q 040580 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCR-----NADLLPE---VYSRAISCFGKQGQLELMENTLKEMVSR-----G 179 (412)
Q Consensus 113 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g 179 (412)
-..+...|...|...|+++.|+.+++...+. | .-.+. ..+.+...|...+++++|..+|+++..- |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 3456666777888888888888877765443 1 11122 3444666777788888888888877542 1
Q ss_pred -CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhcccHHHHHHHHHHH-----
Q 040580 180 -FSVD-SATGNAFIIYYSRFGSLTEMETAYGRLKRS-----RH-LIDK-EGIRAVSFTYLKERKFFMLGEFLRDV----- 245 (412)
Q Consensus 180 -~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~----- 245 (412)
..|. ..+++.|-.+|.+.|++++|...++...+. |. .|.. ..++.+...++..+++++|..+++..
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 1121 245666667788888888777776665431 11 1222 23555666777778888887777652
Q ss_pred ---hcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHc------CCCCc-HhHHHHHHHHHHccCChhHHHHHHHHH
Q 040580 246 ---GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA------GFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHM 315 (412)
Q Consensus 246 ---~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m 315 (412)
+...+. -..+++.|...|-..|++++|..++++..+. +..+. ...++.+..+|.+.++..+|..+|.+.
T Consensus 357 ~~~g~~~~~-~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 357 DAPGEDNVN-LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred hhccccchH-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 111111 2478999999999999999999999987632 22333 456788999999999999999998775
Q ss_pred Hh----CCCC-C-CHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 316 KH----ESVG-P-DLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 316 ~~----~g~~-p-~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
+. .|.. | ...+|..|...|.+.|+++.|.++.+..
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 43 3332 3 3578889999999999999999987665
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.7e-07 Score=82.41 Aligned_cols=217 Identities=10% Similarity=-0.005 Sum_probs=111.6
Q ss_pred CChhHHHHHHHHHHhcC-CCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHH
Q 040580 58 KKPHLAHQLVNTVKSEG-LLPD--NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134 (412)
Q Consensus 58 ~~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 134 (412)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555421 1121 2345555556666666666666666666654 445566666666666667777776
Q ss_pred HHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040580 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 135 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 214 (412)
+.|++..+.+ +-++.+|..+...+...|++++|++.|+...+. .|+..........+...++.++|...++......
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 6666665433 223445666666666666777776666666654 2332211222222334456666666665443221
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhc---CCCC---cchHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 215 HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL---GRKD---LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 215 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
.|+...+ .+.. ...|+..++ +.+..+.. ..+. ....+|..+...+.+.|+.++|...|++..+.
T Consensus 196 -~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 -DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred -CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1221111 1111 122333222 12222110 0000 01246777777777777788887777777754
No 66
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=1e-06 Score=77.96 Aligned_cols=195 Identities=8% Similarity=0.013 Sum_probs=132.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHH----H-HH---HhcCCHHHHHHHHHHHHhCCCCCCH
Q 040580 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS--ATGNAFI----I-YY---SRFGSLTEMETAYGRLKRSRHLIDK 219 (412)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li----~-~~---~~~g~~~~a~~~~~~~~~~~~~~~~ 219 (412)
++|--.+..-...|+.+...++|+....+ ++|-. ..|.-.| + ++ ....+.+.+.++|+...+ -++...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCccc
Confidence 35555555556667777777777777655 33311 1122111 1 11 245677777778777776 233345
Q ss_pred HHHHHHHHHHH----hcccHHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHH
Q 040580 220 EGIRAVSFTYL----KERKFFMLGEFLRDV-GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294 (412)
Q Consensus 220 ~~~~~li~~~~----~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 294 (412)
.|+..+--.|+ +..++..|.+++... +.++.+ .+|...|..=.+.++++.+..++++..+.+ +-|..+|.-
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~k 476 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSK 476 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHH
Confidence 56555544444 567888888888753 444433 788888888888999999999999999875 446788888
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 295 RAVAFSRMSMFWDLHLSLEHMKHES-VGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 295 ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
....-...|+.+.|..+|.-.++.. +......|.+.|+--...|.++.+..+++.+
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 8888888999999999999988743 2223445555555555689999999999988
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.9e-07 Score=84.06 Aligned_cols=279 Identities=9% Similarity=-0.022 Sum_probs=198.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 040580 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126 (412)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 126 (412)
.-.-..-+-..+++++..++++...+.. ++....+..=|..+...|+..+-..+=..+++.- |-...+|-++...|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 3334445566778888888888887653 5566666666677888888877777777777763 6667888888888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 040580 127 IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMET 205 (412)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~ 205 (412)
.|..++|.+.|.+...-+-... ..|-....+|+-.|..++|+..+...-+- .| ..--+--+---|.+.++.+.|.+
T Consensus 325 i~k~seARry~SKat~lD~~fg-paWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFG-PAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred hcCcHHHHHHHHHHhhcCcccc-HHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 8999999999987754432222 27888888888888888888888776553 11 11112234445778888999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCC------cchHHHHHHHHHHhcCCChHHHHHHHHH
Q 040580 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD------LGNLLWNLLLLSYAGNFKMKSLQREFMR 279 (412)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 279 (412)
.|.+..... +-|+.+.+-+--.....+.+.+|...|+.....-+. .-..+++.|..+|.+.+++++|+..+++
T Consensus 402 Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 988876543 346777777766666778888888888764311110 1235688888888999999999999888
Q ss_pred HHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 040580 280 MSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAY 334 (412)
Q Consensus 280 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 334 (412)
..... +-|..++.++.-.|...|+++.|...|.+. ..+.|+-.+-..++..+
T Consensus 481 aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKa--L~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 481 ALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKA--LALKPDNIFISELLKLA 532 (611)
T ss_pred HHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHH--HhcCCccHHHHHHHHHH
Confidence 77542 456788888888888899999999888875 44778876666666543
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=5.7e-06 Score=76.06 Aligned_cols=356 Identities=13% Similarity=0.032 Sum_probs=231.1
Q ss_pred cccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 22 HQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA 98 (412)
Q Consensus 22 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 98 (412)
.+...|+-++|.......... +.+.|+.+.-.+...+++++|++.|.....-+ +-|...+.-|-..-++.++++..
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 456778889998888876654 66779988888888999999999999998764 34667777777777888999998
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC-CCCHHhHHHHH------HHHHhcCChHHHHHH
Q 040580 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA-DLLPEVYSRAI------SCFGKQGQLELMENT 171 (412)
Q Consensus 99 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li------~~~~~~g~~~~a~~~ 171 (412)
......+.+.. +.....|..+..++.-.|+...|..++++..+... .|++..|.... ....+.|.++.|++.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 88888888763 44567889999999999999999999999877652 56666555432 344567888888877
Q ss_pred HHHHHHCCCCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcccHHHHH-HHHHHHhcC
Q 040580 172 LKEMVSRGFSVDSATGN-AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV-SFTYLKERKFFMLG-EFLRDVGLG 248 (412)
Q Consensus 172 ~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~-~~~~~~~~~ 248 (412)
+..-... ..|...+. +-...+.+.+++++|..++..+...+ ||..-|... ..++.+-.+--++. .++......
T Consensus 208 L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 208 LLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 7665443 12333332 34456778899999999999998775 665554444 44443222222222 333332111
Q ss_pred CCCc-------------------------------chHHHHHHHHHHhcCCChHHHHHHHHHHH----HcC---------
Q 040580 249 RKDL-------------------------------GNLLWNLLLLSYAGNFKMKSLQREFMRMS----EAG--------- 284 (412)
Q Consensus 249 ~~~~-------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~--------- 284 (412)
.+.. -+.++..+.+.|-.-...+-..++.-.+. ..|
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 1100 01334444444433222221111111111 111
Q ss_pred -CCCcHh--HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhccccchHHHHHHhccCCCCCCccc
Q 040580 285 -FHPDLT--TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL-VTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVST 360 (412)
Q Consensus 285 -~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~ 360 (412)
-+|... |+-.++..+-+.|+++.|..+++..++ -.|+. .-|..=.+.+...|+.+.|..++++...-..||...
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 145544 344677788899999999999998765 35553 445444577888999999999999884444466665
Q ss_pred HHHHHHHHhc-CCcccHHHHHHHhcc
Q 040580 361 DPYVFEAFGK-GDFHSSSEAFLEFKR 385 (412)
Q Consensus 361 ~~~li~~~~~-~~~~~a~~~~~~~~~ 385 (412)
-+--.....+ ...++|.+++.....
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhh
Confidence 4444444455 777788887776655
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.7e-06 Score=76.48 Aligned_cols=370 Identities=15% Similarity=0.088 Sum_probs=184.2
Q ss_pred ccccccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 040580 17 FNVPSHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93 (412)
Q Consensus 17 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (412)
..=+..+.+.|++++|.+....+.. .+...+..=+-++.+.+++++|+.+.+.-... ..+..-+---..+..+.+
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 3445567788889998888887764 36666777777778888888888555432210 111111111122334566
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcC--------------------------CCC
Q 040580 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN--------------------------ADL 147 (412)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------------~~~ 147 (412)
+.++|+..++-.- +.+..+...-...+-+.|++++|+.+|+.+.+.+ ++.
T Consensus 94 k~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 94 KLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred cHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 6666666665111 1122344444555666677777777776664322 111
Q ss_pred CHH-hHHHH---HHHHHhcCChHHHHHHHHHHHHCC-------------CCCChHH-HHHHHHHHHhcCCHHHHHHHHHH
Q 040580 148 LPE-VYSRA---ISCFGKQGQLELMENTLKEMVSRG-------------FSVDSAT-GNAFIIYYSRFGSLTEMETAYGR 209 (412)
Q Consensus 148 ~~~-~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~ 209 (412)
.+. +|..+ ...+...|++.+|+++++...+-+ +.-...+ -.-+..++-..|+..+|..++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 111 44433 334557788888888887762211 1101111 11234455677888888888888
Q ss_pred HHhCCCCCCHHH----HHHHHHHHHh---------------------------------------------cccHHHHHH
Q 040580 210 LKRSRHLIDKEG----IRAVSFTYLK---------------------------------------------ERKFFMLGE 240 (412)
Q Consensus 210 ~~~~~~~~~~~~----~~~li~~~~~---------------------------------------------~~~~~~a~~ 240 (412)
+.+... +|... .|.|+..-.. .+.-+.+.+
T Consensus 250 ~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 250 IIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred HHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 776553 22211 1111111000 011111111
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhcC--CChHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHccCChhHHHHHHH---
Q 040580 241 FLRDVGLGRKDLGNLLWNLLLLSYAGN--FKMKSLQREFMRMSEAGFHPDL--TTFNIRAVAFSRMSMFWDLHLSLE--- 313 (412)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~--- 313 (412)
+-. ..++..| ...+.+++....+. ..+.++..++....+. .|.. ..--.++......|+++.|.+++.
T Consensus 329 ~~a--~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 329 LSA--SLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHH--hCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 111 1122222 24444444443332 2355555555555543 2332 233345555666777777777776
Q ss_pred -----HHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc-c--CCCCCCcccHHHHHHH---H-hc-CCcccHHHHH
Q 040580 314 -----HMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-N--LDDSPVVSTDPYVFEA---F-GK-GDFHSSSEAF 380 (412)
Q Consensus 314 -----~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~--~~~~p~~~~~~~li~~---~-~~-~~~~~a~~~~ 380 (412)
.+.+.+..|- +..+++..+.+.++.+.+..++.+. . ....+......+++.- + -+ |+-.+|..++
T Consensus 404 ~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 404 ESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 4444444444 3344555566666666555555443 1 1111222223333322 1 12 6666777666
Q ss_pred HHhcc---CchHHHHHHHHHHHH
Q 040580 381 LEFKR---QRKWTYRKLIAVYLK 400 (412)
Q Consensus 381 ~~~~~---~~~~~~~~l~~~~~~ 400 (412)
+++.. +|..+..-++.+|++
T Consensus 482 eel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHHHHhCCchHHHHHHHHHHHHh
Confidence 66544 556666666666665
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=6.3e-07 Score=71.96 Aligned_cols=195 Identities=11% Similarity=-0.030 Sum_probs=131.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 040580 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126 (412)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 126 (412)
.-.+.-.|...|+...|.+-+++..+.. +-+..+|..+...|.+.|+.+.|.+-|+...+.. +-+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3445556777788888888888877764 2245677777777778888888888888777764 5566777777777788
Q ss_pred cCCHHHHHHHHHHHhhcCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 040580 127 IGCFNEIISIIDQVSCRNADL-LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205 (412)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 205 (412)
.|++++|...|++......-+ .+.+|..+.-+..+.|+.+.|...|++-.+.... ...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 888888888777765443222 2347777777777778888888888777764322 23455566777777778778877
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 040580 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245 (412)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 245 (412)
.++.....+. ++..+.-..|..-...|+.+.+.+.-..+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7777776654 66665555555555566665555444333
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=4.2e-06 Score=76.15 Aligned_cols=197 Identities=10% Similarity=-0.045 Sum_probs=102.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCC-CCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH---H
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGL-LPDNS-TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSD---L 120 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---l 120 (412)
.|..+...+...|+.+.+.+.+....+... .++.. ........+...|++++|..+++...+.. +.|...+.. +
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344445555555666666555555443211 12221 12222334456677777777777776653 334444432 1
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 040580 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200 (412)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 200 (412)
.......+..+.+.+.++.. ....+........+...+...|++++|...+++..+... .+...+..+...+...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCH
Confidence 11112234444444444431 111111222334445566677777777777777776532 2345566666677777777
Q ss_pred HHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcccHHHHHHHHHHH
Q 040580 201 TEMETAYGRLKRSRH-LIDK--EGIRAVSFTYLKERKFFMLGEFLRDV 245 (412)
Q Consensus 201 ~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~ 245 (412)
++|...++....... .|+. ..|..+...+...|++++|.+.+++.
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777777665421 1222 23334555566666666666666654
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.02 E-value=1.3e-06 Score=79.49 Aligned_cols=300 Identities=8% Similarity=-0.129 Sum_probs=176.1
Q ss_pred ccccccccccCCCChHHHHHHHHHhhc---cChhh---HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHH---H
Q 040580 15 KRFNVPSHQTHPKNGDLARKIIRYRKQ---EGFVD---CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA---L 85 (412)
Q Consensus 15 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---l 85 (412)
.+..+...+...|+.+.+...+....+ .+... .......+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 334444455556777776666555433 22222 1122334567899999999999988763 334444442 1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCh
Q 040580 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 165 (412)
.......+....+.+.++... ...+.+......+...+...|++++|.+.+++..+.. +.++..+..+...+...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 111222455555665555411 1223334556677788899999999999999998765 55567888899999999999
Q ss_pred HHHHHHHHHHHHCCC-CCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcccHHHH
Q 040580 166 ELMENTLKEMVSRGF-SVDS--ATGNAFIIYYSRFGSLTEMETAYGRLKRSRH-LIDKEGI-R--AVSFTYLKERKFFML 238 (412)
Q Consensus 166 ~~a~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a 238 (412)
++|...+++...... .|+. ..|..+...+...|++++|..+++....... .+..... + .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999999998877532 2232 3455678889999999999999999864432 1222111 1 222333333432222
Q ss_pred HHH---HHHHhcC-CCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC--c----HhHHHHHHHH--HHccCChh
Q 040580 239 GEF---LRDVGLG-RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP--D----LTTFNIRAVA--FSRMSMFW 306 (412)
Q Consensus 239 ~~~---~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~----~~~~~~ll~~--~~~~g~~~ 306 (412)
.+. ....... ..............++...|+.+.|..+++.+......+ . ..+-..++.+ +...|+.+
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 222 1111111 101111222355667777888888888888877432121 1 1111223333 44778888
Q ss_pred HHHHHHHHHHh
Q 040580 307 DLHLSLEHMKH 317 (412)
Q Consensus 307 ~a~~~~~~m~~ 317 (412)
+|.+.+.....
T Consensus 325 ~A~~~L~~al~ 335 (355)
T cd05804 325 TALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHH
Confidence 88887776543
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=6.1e-07 Score=78.92 Aligned_cols=218 Identities=9% Similarity=-0.077 Sum_probs=147.4
Q ss_pred CChHHHHHHHHHHHhCC-CCcC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 040580 93 GFVLEAQVVWEELLSSS-FVLS--VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 169 (412)
+..+.+..-+.+++... ..|+ ...|..+...+.+.|+.++|...|++..+.+ +.++..|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777777777532 2222 4568888888999999999999999988765 556789999999999999999999
Q ss_pred HHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Q 040580 170 NTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG 248 (412)
Q Consensus 170 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 248 (412)
..|++..+. .| +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|.+.+.+....
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999999875 45 35677778888889999999999999988764 33221122222234567788888888654322
Q ss_pred CCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcC-----CCC-cHhHHHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 040580 249 RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG-----FHP-DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320 (412)
Q Consensus 249 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 320 (412)
. ++ ..|.. .......|+...+ ..+..+.+.. +.| ....|..+...+.+.|++++|...|++..+.++
T Consensus 195 ~-~~--~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 L-DK--EQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred C-Cc--cccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2 11 12221 1222234444443 3444444211 111 234677888888889999999999888876553
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.01 E-value=1.2e-05 Score=73.92 Aligned_cols=84 Identities=7% Similarity=-0.103 Sum_probs=56.2
Q ss_pred ccccccCCCChHHHHHHHHHhhcc-----ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 040580 19 VPSHQTHPKNGDLARKIIRYRKQE-----GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93 (412)
Q Consensus 19 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (412)
.+....++|++-..+..|++.... ....|...+......+-++.+..++++..+. ++..-+--|..+++.+
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhcc
Confidence 344455677777777777765432 3345777777777788888888888877753 3333555566677777
Q ss_pred ChHHHHHHHHHHH
Q 040580 94 FVLEAQVVWEELL 106 (412)
Q Consensus 94 ~~~~a~~~~~~m~ 106 (412)
++++|.+.+...+
T Consensus 184 ~~~eaa~~la~vl 196 (835)
T KOG2047|consen 184 RLDEAAQRLATVL 196 (835)
T ss_pred chHHHHHHHHHhc
Confidence 7777777666654
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=1.1e-06 Score=70.53 Aligned_cols=196 Identities=11% Similarity=-0.053 Sum_probs=136.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (412)
+...|.-.|.+.|+...|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++..... +-+-++.|..-.-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34456677889999999999999998876 5567889999999999999999999999887654 445568888888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHH
Q 040580 161 KQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 239 (412)
..|.+++|...|++....-.-| -..+|..+.-+..+.|+.+.|...|+.-.+.... .+
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~-------------------- 173 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FP-------------------- 173 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CC--------------------
Confidence 9999999999999888763333 2457777887888899999999999887765421 22
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHH
Q 040580 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 315 (412)
.+.-.+.....+.|++-.|...++.....+. ++..+.-.-|..-...|+.+.+.++=..+
T Consensus 174 ---------------~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 174 ---------------PALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred ---------------hHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344444445555555555555555544332 55555555555555555555554443333
No 76
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.8e-07 Score=80.21 Aligned_cols=235 Identities=11% Similarity=-0.038 Sum_probs=179.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 040580 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169 (412)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 169 (412)
--.|+...+..-|+..++....+ ...|--+...|....+.++..+.|++..+-+ +-+|++|..-.+...-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 34588889999999999876333 3337778888999999999999999998776 677889999888888899999999
Q ss_pred HHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Q 040580 170 NTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG 248 (412)
Q Consensus 170 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 248 (412)
.=|++.... .| +...|.-+..+.-+.++++++...|++.++. ++..+.+|+-....+...+++++|.+.++....-
T Consensus 415 aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999998874 44 4566777777777899999999999998875 4556889999999999999999999999874332
Q ss_pred CCC-------cchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 040580 249 RKD-------LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321 (412)
Q Consensus 249 ~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 321 (412)
.+. +.+.+--.++..-.+ +++..|..++++..+.. +-....|..|...-.+.|++++|+++|++-..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~---- 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ---- 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----
Confidence 222 212222233333233 88999999999988653 22357889999999999999999999988543
Q ss_pred CCHhhHHHHHHHHHh
Q 040580 322 PDLVTYGCVVDAYLD 336 (412)
Q Consensus 322 p~~~~~~~li~~~~~ 336 (412)
-..|-.-++++|.-
T Consensus 566 -lArt~~E~~~a~s~ 579 (606)
T KOG0547|consen 566 -LARTESEMVHAYSL 579 (606)
T ss_pred -HHHhHHHHHHHHHH
Confidence 24455556666554
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.4e-05 Score=72.45 Aligned_cols=278 Identities=12% Similarity=-0.019 Sum_probs=182.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (412)
.......-|-..+++++...+.+.+.+.. ++....+..-|.++.+.|+..+-..+=.++.+.. +-.+.+|-++.--|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 33333444556677888888888877765 6667777777777778887777666666776543 455568888877777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHH
Q 040580 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGE 240 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 240 (412)
..|+.++|.+.|.+...-... -...|-.+...|+-.|..++|...+...-+.-.. ....+--+---|.+.+.++-|.+
T Consensus 324 ~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHH
Confidence 778888888888776543211 2356777777888888888888877666543111 11112223334667778888888
Q ss_pred HHHHH-hcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHc--CCCC----cHhHHHHHHHHHHccCChhHHHHHHH
Q 040580 241 FLRDV-GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA--GFHP----DLTTFNIRAVAFSRMSMFWDLHLSLE 313 (412)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~ 313 (412)
+|.+. ...+.+| ...+-+....-..+.+.+|..+|+..... .+.+ -..+++.|-.+|.+.+.+++|+..++
T Consensus 402 Ff~~A~ai~P~Dp--lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALAIAPSDP--LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHhcCCCcc--hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 88764 4444444 77777777777778888888888776521 1111 23356777778888888888888887
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHH
Q 040580 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFE 366 (412)
Q Consensus 314 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~ 366 (412)
...... +-+..++.++--.|...|+++.|.+.|.+.- ...|+..+-..++.
T Consensus 480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL-~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL-ALKPDNIFISELLK 530 (611)
T ss_pred HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH-hcCCccHHHHHHHH
Confidence 766543 2367777777777778888888888887761 23455544444443
No 78
>PF12854 PPR_1: PPR repeat
Probab=98.89 E-value=2.6e-09 Score=59.50 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=19.4
Q ss_pred CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 109 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
|++||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 79
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.88 E-value=3.8e-05 Score=70.85 Aligned_cols=297 Identities=11% Similarity=0.043 Sum_probs=179.7
Q ss_pred hccccccccccCCCChHHHHHHHHHhhcc--ChhhHHHHHHHHhc----------------CC------ChhHHHHHHHH
Q 040580 14 FKRFNVPSHQTHPKNGDLARKIIRYRKQE--GFVDCASLVEDLGR----------------KK------KPHLAHQLVNT 69 (412)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~----------------~~------~~~~a~~~~~~ 69 (412)
.-+++|.+.|.++|.+++|+.++++..+. .+.-|+.+.++|++ .+ +++-.+.-|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 34678888889999999999999886553 22233333333322 11 12223333444
Q ss_pred HHhcCC-----------CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC------HHHHHHHHHHHHccCCHHH
Q 040580 70 VKSEGL-----------LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS------VQVLSDLMDAYGRIGCFNE 132 (412)
Q Consensus 70 m~~~g~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~~~~~~ 132 (412)
+...+. +-+..+|..-+. ...|+..+....|.+.++. +.|. ...|..+.+.|-..|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 333210 112333333222 2346677777888887764 2232 3568889999999999999
Q ss_pred HHHHHHHHhhcCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHC-----------CCCC------ChHHHHHHHH
Q 040580 133 IISIIDQVSCRNADLL---PEVYSRAISCFGKQGQLELMENTLKEMVSR-----------GFSV------DSATGNAFII 192 (412)
Q Consensus 133 a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----------g~~p------~~~~~~~li~ 192 (412)
|..+|++..+-..+.- ..+|......-.+..+++.|+.++.....- +..+ +...|+..+.
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999876554322 126666666667888899998888765432 1111 1233555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHHhcC---C
Q 040580 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG-NLLWNLLLLSYAGN---F 268 (412)
Q Consensus 193 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~---g 268 (412)
.--..|-++....+++.+.+..+. ++.......-.+-...-++++.+.+++-..-.+-|+ ...|+.-+.-+.+. .
T Consensus 486 leEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 555678888888999998877653 333333333344455667888888887433333333 36777777666553 4
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHH--HHccCChhHHHHHHHHH
Q 040580 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVA--FSRMSMFWDLHLSLEHM 315 (412)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~m 315 (412)
.++.|..+|++..+ |++|...-+--|+-+ --+.|....|..++++.
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 68999999999887 777764333223322 12346666666666653
No 80
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=2.8e-09 Score=59.33 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=22.0
Q ss_pred CCCCcHhHHHHHHHHHHccCChhHHHHHHHHH
Q 040580 284 GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315 (412)
Q Consensus 284 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 315 (412)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667777777777777777777777666665
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.84 E-value=1.4e-07 Score=81.97 Aligned_cols=247 Identities=12% Similarity=-0.003 Sum_probs=161.2
Q ss_pred CCCChHHHHHHHHHhhcc----ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 040580 25 HPKNGDLARKIIRYRKQE----GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100 (412)
Q Consensus 25 ~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 100 (412)
-.|++..++.-.+ .... +.....-+.+++...|+.+.++ .+..... .|.......+...+....+-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 4577777775544 2221 2334556677888888766543 4444433 6776666666555544355555655
Q ss_pred HHHHHHhCCCC-cCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 040580 101 VWEELLSSSFV-LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179 (412)
Q Consensus 101 ~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 179 (412)
-++.....+.. .+..........+...|++++|++++++. .+.+.....+..+.+.++++.|.+.++.|.+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~- 160 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI- 160 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 55554443333 23334444446677889999999888743 34567788899999999999999999999875
Q ss_pred CCCChHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchH
Q 040580 180 FSVDSATGNAFIIYYS----RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL 255 (412)
Q Consensus 180 ~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 255 (412)
..|. +...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+.-...++ +..
T Consensus 161 -~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d 236 (290)
T PF04733_consen 161 -DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPD 236 (290)
T ss_dssp -SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHH
T ss_pred -CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHH
Confidence 3343 3333444443 334689999999998664 5678899999999999999999999999986444433 457
Q ss_pred HHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCcH
Q 040580 256 LWNLLLLSYAGNFKM-KSLQREFMRMSEAGFHPDL 289 (412)
Q Consensus 256 ~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~ 289 (412)
+...++......|+. +.+.+.+.+++.. .|+.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 777788887888877 7788888888865 5553
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=3.4e-05 Score=73.09 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=140.6
Q ss_pred ccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhc-CC--------CCCHHhHHHHHHHHHh
Q 040580 21 SHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSE-GL--------LPDNSTLCALMLCYAN 91 (412)
Q Consensus 21 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~--------~p~~~~~~~ll~~~~~ 91 (412)
+.|...|+.+.|.+-.+.+. +...|..|.+.|.+.++.+-|.-.+-.|... |. .|+ .+=..+.-....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 46788999999987777654 4457999999999999999998888877542 11 222 222222233567
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 040580 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENT 171 (412)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 171 (412)
.|.+++|+.+|.+-.+ |..|=+.|-..|.+++|.++-+.=.+-.+ ..||..-..-+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHH
Confidence 8999999999988876 34455667778999999887664332222 24777777777777888888887
Q ss_pred HHH----------HHHCCC---------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040580 172 LKE----------MVSRGF---------SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232 (412)
Q Consensus 172 ~~~----------m~~~g~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 232 (412)
|++ |..... ..|...|.-.....-..|+.+.|..+|...+. |-+++...|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 764 222211 12344455555555567788888777766553 33344444444
Q ss_pred ccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHH
Q 040580 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279 (412)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 279 (412)
|+.++|.++-++-+ |..+...|...|-..|++.+|...|.+
T Consensus 952 Gk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 952 GKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred cCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55555544444321 223344444444444555444444443
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=4.5e-05 Score=65.40 Aligned_cols=370 Identities=8% Similarity=0.001 Sum_probs=194.7
Q ss_pred cccccCCCChHHHHHHHHHhhcc---ChhhHHH-HHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh
Q 040580 20 PSHQTHPKNGDLARKIIRYRKQE---GFVDCAS-LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95 (412)
Q Consensus 20 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 95 (412)
+.-+....++.-|+.+++.-... .....+. +..++-..|++++|...+.-+.... .|+...+..|....--.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44455667788888887654321 1112222 3445567788999998888776643 56666666666555667888
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175 (412)
Q Consensus 96 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 175 (412)
.+|.++-.... .+...-..|+..-.+.++-++-..+-+.+.+.. .---+|.+..-..-.+++|++++++.
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88877655432 233344445556667777777666655553321 22223333334445789999999998
Q ss_pred HHCCCCCChHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cccHH----------------
Q 040580 176 VSRGFSVDSATGNAFII-YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK--ERKFF---------------- 236 (412)
Q Consensus 176 ~~~g~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~---------------- 236 (412)
... .|.-...|..+. +|.+..-++.+.+++..-.+.- +-++...|.......+ .|+..
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 875 345555554443 4567777788888887766542 2233333333333322 12221
Q ss_pred HHHHHHHHH---------------hcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHH----
Q 040580 237 MLGEFLRDV---------------GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV---- 297 (412)
Q Consensus 237 ~a~~~~~~~---------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~---- 297 (412)
.+..+.+.= +.-..- +.+--.|+--|.+++++.+|..+.+++.- ..|-....-.+..
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHI--PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALG 330 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhC--hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhh
Confidence 111111110 000000 13334455567788888888887666541 1222211111111
Q ss_pred -HHHccCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhccccchHHHHHHhccC-CCCCCcccHHHHHHHHhcCCcc
Q 040580 298 -AFSRMSMFWDLHLSLEHMKHESVGPD-LVTYGCVVDAYLDKRLGRNLDFGLSKMNL-DDSPVVSTDPYVFEAFGKGDFH 374 (412)
Q Consensus 298 -~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~~~~ 374 (412)
-......+.-|...|...-..+..-| ..--.++..++.-..+++++.-+++.++. -...|...+|..-.-+..|++.
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYV 410 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChH
Confidence 11112223445555544333333222 11222344444455666777777777633 3334444455433333447777
Q ss_pred cHHHHHHHhcc---CchHHHHHHHH-HHHHcCccccc
Q 040580 375 SSSEAFLEFKR---QRKWTYRKLIA-VYLKKQLRRNQ 407 (412)
Q Consensus 375 ~a~~~~~~~~~---~~~~~~~~l~~-~~~~~g~~~~a 407 (412)
+|.++|.++.. +|..+|.+++. +|.+.|+.+-|
T Consensus 411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 77777777665 45566655443 45556655544
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=9.4e-07 Score=76.77 Aligned_cols=81 Identities=17% Similarity=0.093 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcccc-chHHHH
Q 040580 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG-RNLDFG 346 (412)
Q Consensus 268 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~ 346 (412)
+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3466666666665532 3455566666666666666666666666665433221 344444555555555555 445556
Q ss_pred HHhc
Q 040580 347 LSKM 350 (412)
Q Consensus 347 ~~~m 350 (412)
+.++
T Consensus 259 l~qL 262 (290)
T PF04733_consen 259 LSQL 262 (290)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 6665
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1.8e-06 Score=71.89 Aligned_cols=291 Identities=14% Similarity=0.019 Sum_probs=154.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHH-HHHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR-AISCF 159 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~ 159 (412)
-|.+.+..+.+..+++.|.+++..-.+.. +.+....+.|..+|-...++..|...++++... .|...-|.. -.+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 34555555666666666666666655543 335566666666666666777777777766432 233333322 13445
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHH
Q 040580 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIY--YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM 237 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 237 (412)
-+.+.+..|+++...|... |....-..-+.+ .-+.+++..+..+.+++...| +..+.+.......+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 5666677777777666553 222221111221 224566667777776655332 33333334444456677777
Q ss_pred HHHHHHHH-hcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-------------CcHhH--------HHHH
Q 040580 238 LGEFLRDV-GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH-------------PDLTT--------FNIR 295 (412)
Q Consensus 238 a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------------p~~~~--------~~~l 295 (412)
|.+-|+.. ...+..| ..+||..+ ++.+.|+.+.|++...++.+.|++ ||+.+ -+.+
T Consensus 163 AvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 77766653 3333433 46676655 455678899999999999988875 22211 1223
Q ss_pred HHH-------HHccCChhHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHhccccchHHHHHHhc-cCCCCCCcccHHHHHH
Q 040580 296 AVA-------FSRMSMFWDLHLSLEHMKH-ESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFE 366 (412)
Q Consensus 296 l~~-------~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~ 366 (412)
+.+ +-+.|+.+.|.+-+..|-- ..-..|+.|...+.-.-. .+++.+-.+-+..+ ...+ ....||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 333 3355667777766666632 223345555544321111 22233333223333 3233 23456666666
Q ss_pred HHhc-CCcccHHHHHHHhc
Q 040580 367 AFGK-GDFHSSSEAFLEFK 384 (412)
Q Consensus 367 ~~~~-~~~~~a~~~~~~~~ 384 (412)
.||+ .-++.|..++.+-.
T Consensus 319 lyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHhhhHHHhHHHHHHhhCc
Confidence 6666 44555666666543
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4e-05 Score=66.99 Aligned_cols=281 Identities=13% Similarity=0.020 Sum_probs=163.7
Q ss_pred CCChhHHHHHHHHHHhc-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 040580 57 KKKPHLAHQLVNTVKSE-GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135 (412)
Q Consensus 57 ~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 135 (412)
.++-..|.+++-.+... -++-|.+....+...+...|+.++|...|+.....+ +-+........-.+.+.|+.++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 34444454444333322 244456667777777788888888888887776543 2233333444444556677776666
Q ss_pred HHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040580 136 IIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215 (412)
Q Consensus 136 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 215 (412)
+...+-... ..+...|-.-.......++++.|+.+-++..+.... +...+-.=-..+...|++++|.-.|+..+...
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 666654332 223334444444555667777777777766654211 23334333355667788888888887776543
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHH----HhcCCCCcchHHHHHHH-HHH-hcCCChHHHHHHHHHHHHcCCCCc-
Q 040580 216 LIDKEGIRAVSFTYLKERKFFMLGEFLRD----VGLGRKDLGNLLWNLLL-LSY-AGNFKMKSLQREFMRMSEAGFHPD- 288 (412)
Q Consensus 216 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~li-~~~-~~~g~~~~a~~~~~~m~~~~~~p~- 288 (412)
+-+..+|..|++.|...|++.+|.-+-+. |+... .+...+. ..+ -....-++|..+++.-.+. .|+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA-----~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA-----RSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch-----hhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 23567888888888888888877655443 22211 2222221 111 1122345666666655432 555
Q ss_pred HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 289 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
....+.+...|...|..+++..+++.-.. ..||...-+.|-+.+.....+.++.+.|...
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34555666667777777788777776544 4677777777777777777777776666555
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.1e-05 Score=66.95 Aligned_cols=265 Identities=8% Similarity=-0.077 Sum_probs=192.8
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS-TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 121 (412)
|+.....+.+.+...|+.++|+..|++.... .|+.. ....-.-.+.+.|+.+....+...+.... +-+..-|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 7788889999999999999999999998864 34332 22222333567899999888888887643 23444555556
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCH
Q 040580 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSL 200 (412)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 200 (412)
.......++..|+.+-++..+.+ +-+...|-.=-..+...|++++|.-.|+..+.. .| +...|.-|+..|...|++
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchH
Confidence 66677889999999988876544 222234444446677889999999999988764 54 668999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHH
Q 040580 201 TEMETAYGRLKRSRHLIDKEGIRAVS-FTYL-KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278 (412)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 278 (412)
.+|.-.-++..+. .+.+..+...+- ..+. ...--++|.+++++--...|.. ..+-+.+...+...|+.++++.+++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-TPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-HHHHHHHHHHHHhhCccchHHHHHH
Confidence 9988776665432 122333333331 2222 2233578888888754444432 3567778888999999999999999
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 040580 279 RMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 279 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
+-... .||....+.|.+.+...+.++++.+.|.....
T Consensus 463 ~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 463 KHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 98754 79999999999999999999999999987765
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=3.8e-06 Score=76.25 Aligned_cols=252 Identities=11% Similarity=0.054 Sum_probs=172.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 168 (412)
+.+.|++.+|.-.|+..++.+ |-+...|-.|.......++-..|+..+++..+.+ +-+..+.-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 456788888888888888876 6678889888888888888888888888887654 34455777777888888888888
Q ss_pred HHHHHHHHHCCCC--------CChHHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcccHHHHH
Q 040580 169 ENTLKEMVSRGFS--------VDSATGNAFIIYYSRFGSLTEMETAYGRL-KRSRHLIDKEGIRAVSFTYLKERKFFMLG 239 (412)
Q Consensus 169 ~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 239 (412)
+..++.-.....+ ++...-.. ..+.....+....++|-++ ...+..+|+.+...|--.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888776543210 00000000 1122222333444444444 34455578888888888888888999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHH--
Q 040580 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMK-- 316 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~-- 316 (412)
+.|+..-...|+ |...||-|...++...+.++|+..|++..+. +|+ ++....|.-+|...|.+++|.+.|-..+
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 988876555554 6688999999999888999999999888865 777 4555567778888888888887775543
Q ss_pred -hC------CCCCCHhhHHHHHHHHHhccccchHHHHH
Q 040580 317 -HE------SVGPDLVTYGCVVDAYLDKRLGRNLDFGL 347 (412)
Q Consensus 317 -~~------g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 347 (412)
.. +..++...|.+|=.++.-.++.|.+.++.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 22 12223456666665666566665444443
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=3.6e-05 Score=65.96 Aligned_cols=147 Identities=10% Similarity=-0.037 Sum_probs=72.1
Q ss_pred ccccccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh
Q 040580 19 VPSHQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95 (412)
Q Consensus 19 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 95 (412)
+..++.+.|++++|..+++.+.+. +...+-.+.-.+--.|.+.+|.++-....+ ++..-..|++..-+.++-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcH
Confidence 445677899999999999987654 333444444444445667777766554332 222333344444455555
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHH-HHHHHHhcCChHHHHHHHHH
Q 040580 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR-AISCFGKQGQLELMENTLKE 174 (412)
Q Consensus 96 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~ 174 (412)
++-..+.+.+... ..---+|....-..-.+.+|.+++.+....+ |+-...|. +.-+|.+..-++-+.++++-
T Consensus 138 k~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 5554444444321 1111222222222234555666665554322 11112222 22334455555555555554
Q ss_pred HHH
Q 040580 175 MVS 177 (412)
Q Consensus 175 m~~ 177 (412)
..+
T Consensus 211 YL~ 213 (557)
T KOG3785|consen 211 YLR 213 (557)
T ss_pred HHH
Confidence 444
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.73 E-value=0.00011 Score=67.94 Aligned_cols=250 Identities=15% Similarity=-0.000 Sum_probs=161.8
Q ss_pred CCCChHHHHHHHHHhhccC---hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 040580 25 HPKNGDLARKIIRYRKQEG---FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVV 101 (412)
Q Consensus 25 ~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 101 (412)
..+++...++..+.+.++. ..|.....-.+...|+-++|.+....-.+..++ +...|+.+.-.+-...++++|...
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 3445555555555544431 122222222345568888998888777664433 667788887777778899999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 040580 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG-F 180 (412)
Q Consensus 102 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~ 180 (412)
|....+.+ +-|...+.-+--.-++.|+++.....-.+..+.. +-....|..+..+..-.|+...|..++++..+.. -
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999876 6677888888888888888888888777776543 2333488888888899999999999999987764 2
Q ss_pred CCChHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcc
Q 040580 181 SVDSATGNAFI------IYYSRFGSLTEMETAYGRLKRSRHLIDKE-GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253 (412)
Q Consensus 181 ~p~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 253 (412)
.|+...|.-.. ....+.|.++.|.+.+..-... ..|.. .-..-...+.+.+++++|..++..+-...++
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-- 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-- 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch--
Confidence 45665554332 3345677777777776554432 11222 2233456677889999999999987665554
Q ss_pred hHHHHH-HHHHHhc-CCChHHHHHHHHHHH
Q 040580 254 NLLWNL-LLLSYAG-NFKMKSLQREFMRMS 281 (412)
Q Consensus 254 ~~~~~~-li~~~~~-~g~~~~a~~~~~~m~ 281 (412)
...|.- +..++.+ .+..+....+|....
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 344444 4444432 233333334555444
No 91
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=1.4e-05 Score=74.64 Aligned_cols=236 Identities=12% Similarity=0.047 Sum_probs=183.6
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 040580 111 VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190 (412)
Q Consensus 111 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 190 (412)
+|--..-..+...+.+.|-...|..+|++. ..|.-+|-+|+..|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 344444456778888999999999999987 47888999999999999999999888873 6899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH-HhcCCCCcchHHHHHHHHHHhcCCC
Q 040580 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD-VGLGRKDLGNLLWNLLLLSYAGNFK 269 (412)
Q Consensus 191 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~ 269 (412)
.+......-+++|.++.+..... .-..+.....+.+++.++.+.|+. +...+..+ .+|-.+-.+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~--~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQL--GTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccch--hHHHhccHHHHHHhh
Confidence 98888888888999988775432 111222223346889999998885 45555554 889888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHH
Q 040580 270 MKSLQREFMRMSEAGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348 (412)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 348 (412)
++.|.+.|..-... .|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+++.
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999998854 566 6789999999999999999999999998877 4456677777778889999999999998
Q ss_pred hc---cCCCCCCcccHHHHHHHHhc
Q 040580 349 KM---NLDDSPVVSTDPYVFEAFGK 370 (412)
Q Consensus 349 ~m---~~~~~p~~~~~~~li~~~~~ 370 (412)
++ +.... |......++....+
T Consensus 612 rll~~~~~~~-d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 612 RLLDLRKKYK-DDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHhhhhcc-cchhhHHHHHHHHh
Confidence 87 22222 55555555555544
No 92
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.68 E-value=0.00026 Score=64.26 Aligned_cols=73 Identities=7% Similarity=-0.175 Sum_probs=51.4
Q ss_pred hhhccccccccccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 040580 12 FKFKRFNVPSHQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87 (412)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (412)
.-.+|..|++-+..+ -.++++..++++... ....|..-|..-...++++....+|.+-...- .+...|..-|+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 335566777766544 788888888887754 56678888888888888888888888876542 34555555444
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=0.00013 Score=75.12 Aligned_cols=331 Identities=8% Similarity=-0.113 Sum_probs=187.4
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC--C----CcC--HHHHHHHHHHHH
Q 040580 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS--F----VLS--VQVLSDLMDAYG 125 (412)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~----~~~--~~~~~~li~~~~ 125 (412)
....|+++.+..+++.+.......+..........+...|+++++..+++.....- . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44556676666666655322111122223334445567789999888888765421 0 111 122233344556
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CChHHHHHHHHHHHh
Q 040580 126 RIGCFNEIISIIDQVSCRNADLLP----EVYSRAISCFGKQGQLELMENTLKEMVSR----GFS-VDSATGNAFIIYYSR 196 (412)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~ 196 (412)
..|++++|...+++..+.....+. ...+.+...+...|++++|...+.+.... |-. +...+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999998887653111111 14455566677889999999888877542 111 112344455667778
Q ss_pred cCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcccHHHHHHHHHHHhc----CCCCcchHHHHHHHHHHh
Q 040580 197 FGSLTEMETAYGRLKR----SRHL--I-DKEGIRAVSFTYLKERKFFMLGEFLRDVGL----GRKDLGNLLWNLLLLSYA 265 (412)
Q Consensus 197 ~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~~~ 265 (412)
.|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+... .........+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8999999888877654 2221 1 223344555666777999999888776421 111112344555666777
Q ss_pred cCCChHHHHHHHHHHHHcCC-CCcHhHH-----HHHHHHHHccCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHh
Q 040580 266 GNFKMKSLQREFMRMSEAGF-HPDLTTF-----NIRAVAFSRMSMFWDLHLSLEHMKHESVGPD---LVTYGCVVDAYLD 336 (412)
Q Consensus 266 ~~g~~~~a~~~~~~m~~~~~-~p~~~~~-----~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~ 336 (412)
..|+.+.|...+.+.....- ......+ ...+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 88999999888887753210 1111111 1122344557888888888766543211111 1113455667777
Q ss_pred ccccchHHHHHHhc-cC----CCCCCc-ccHHHHHHHHhc-CCcccHHHHHHHhc
Q 040580 337 KRLGRNLDFGLSKM-NL----DDSPVV-STDPYVFEAFGK-GDFHSSSEAFLEFK 384 (412)
Q Consensus 337 ~~~~~~a~~~~~~m-~~----~~~p~~-~~~~~li~~~~~-~~~~~a~~~~~~~~ 384 (412)
.|+.++|...+++. .. +..++. .+...+-.++.+ |+..+|.+.+.+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888776 22 221111 122222233444 88888888877643
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=0.00017 Score=74.33 Aligned_cols=325 Identities=10% Similarity=-0.043 Sum_probs=199.2
Q ss_pred CCCChHHHHHHHHHhhc----cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcC--C----CCCH--HhHHHHHHHHHhc
Q 040580 25 HPKNGDLARKIIRYRKQ----EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEG--L----LPDN--STLCALMLCYANN 92 (412)
Q Consensus 25 ~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~----~p~~--~~~~~ll~~~~~~ 92 (412)
..|+++.+...++.++. .+..........+...|++++|..++......- . .|.. .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 45566666666665532 122223334445567789999999988775421 0 1111 1222233445678
Q ss_pred CChHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC---CCC--HHhHHHHHHHHHhcC
Q 040580 93 GFVLEAQVVWEELLSSSFVLS----VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA---DLL--PEVYSRAISCFGKQG 163 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~~~~li~~~~~~g 163 (412)
|++++|...++...+.-...+ ....+.+...+...|++++|...+++...... .+. ..++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 999999999998876311112 23456677778889999999999988754311 111 124455667788899
Q ss_pred ChHHHHHHHHHHHH----CCCC--C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhc
Q 040580 164 QLELMENTLKEMVS----RGFS--V-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSR--HLI--DKEGIRAVSFTYLKE 232 (412)
Q Consensus 164 ~~~~a~~~~~~m~~----~g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~ 232 (412)
++++|...+++... .|.. | ....+..+...+...|++++|...+++..... ..+ ....+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 99999999887654 2221 1 12334445556677899999999888775431 112 233444456677788
Q ss_pred ccHHHHHHHHHHHhcC--CCCcchHHH-----HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH---hHHHHHHHHHHcc
Q 040580 233 RKFFMLGEFLRDVGLG--RKDLGNLLW-----NLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL---TTFNIRAVAFSRM 302 (412)
Q Consensus 233 ~~~~~a~~~~~~~~~~--~~~~~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~ 302 (412)
|++++|.+.+.+.... .... ...+ ...+..+...|+.+.|...+............ ..+..+..++...
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRY-HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccc-cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 9999998888775221 1110 0111 11224455678999998887765532111111 1134566678888
Q ss_pred CChhHHHHHHHHHHh----CCCCCC-HhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 303 SMFWDLHLSLEHMKH----ESVGPD-LVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 303 g~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
|+.++|..++.+... .|..++ ..+...+-.++.+.|+.++|.+.+.+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999888754 343332 345556667788899999998888777
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=3.4e-05 Score=77.01 Aligned_cols=238 Identities=8% Similarity=-0.045 Sum_probs=169.4
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCH-----HhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP-----EVYSRAISCFGKQGQLELMENTLKEMV 176 (412)
Q Consensus 102 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~ 176 (412)
|+++.... |-+...|-..|......++.+.|.+++++.... +.+.. ..|.++++.-...|.-+...++|++..
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 34444332 445677888888889999999999999887643 21211 277788887778888888889999888
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCC-cchH
Q 040580 177 SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD-LGNL 255 (412)
Q Consensus 177 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 255 (412)
+.. . ....|..|...|.+.+..++|.++++.|.+.- .....+|...+..+.+..+-+.|.+++.+.-..-+. --..
T Consensus 1525 qyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 741 1 23567788889999999999999999988752 256778888999999988888888888875333222 1123
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH--hhHHHHHHH
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL--VTYGCVVDA 333 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~ 333 (412)
...-.+..-.+.|+.+.+..+|+.....- +--...|+..++.-.+.|+.+.+..+|++.+..++.|-. ..|...+..
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 44455555667899999999998887542 224678899999999999999999999999888887743 345555544
Q ss_pred HHhccccchHHH
Q 040580 334 YLDKRLGRNLDF 345 (412)
Q Consensus 334 ~~~~~~~~~a~~ 345 (412)
--..|+-+.++.
T Consensus 1681 Ek~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEY 1692 (1710)
T ss_pred HHhcCchhhHHH
Confidence 444555544433
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=4.4e-05 Score=63.90 Aligned_cols=287 Identities=12% Similarity=-0.028 Sum_probs=168.7
Q ss_pred cccccccccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHH-HHHHHHh
Q 040580 16 RFNVPSHQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA-LMLCYAN 91 (412)
Q Consensus 16 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~ 91 (412)
...++..+.+..++++|++++..-.++ +....+.+..+|-...++..|-+.++++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 444455556677788888877766554 4455667777777888888888888888764 455555543 2345567
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH--HHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 040580 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA--YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169 (412)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 169 (412)
.+.+..|+++...|... |+...-..-+.+ .-..+++..+..++++....+ +.++.+..-....+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 77888888888777642 222222222222 224577777777777775333 2345555555556889999999
Q ss_pred HHHHHHHHC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------------------HHHHHHH
Q 040580 170 NTLKEMVSR-GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE---------------------GIRAVSF 227 (412)
Q Consensus 170 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~li~ 227 (412)
+-|+...+- |..| ...|+..+ ++.+.|+.+.|.+...++.+.|++-.+. .-+.++.
T Consensus 165 qkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 165 QKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 999987764 5554 66787665 4557788999999999999888653221 1122222
Q ss_pred H-------HHhcccHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 040580 228 T-------YLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299 (412)
Q Consensus 228 ~-------~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 299 (412)
+ +.+.|+++.|.+.+-.|.... .+.|++|...+.-.-+ .+++.+...-+.-+.+.. +-...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 2 233466666666666553321 2234455544332211 233333333334443332 11235666666666
Q ss_pred HccCChhHHHHHHHH
Q 040580 300 SRMSMFWDLHLSLEH 314 (412)
Q Consensus 300 ~~~g~~~~a~~~~~~ 314 (412)
|+..-++.|-.++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 666666666655544
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=1.1e-05 Score=68.78 Aligned_cols=183 Identities=20% Similarity=0.067 Sum_probs=93.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH---hH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS---VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE---VY 152 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~ 152 (412)
...+..+...+...|+++.|...++++.+.. +.+ ..++..+..++.+.|++++|...++++.+.. +-++. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence 4445555555666666666666666665532 111 1345555666666666666666666665432 11121 23
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 040580 153 SRAISCFGKQ--------GQLELMENTLKEMVSRGFSVDSA-TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223 (412)
Q Consensus 153 ~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (412)
..+-.++... |++++|.+.|+...+. .|+.. ....+... .. ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HHH--------HHHH
Confidence 3333333322 5566677777666654 23221 11111111 00 000 000 0011
Q ss_pred HHHHHHHhcccHHHHHHHHHHHhcCCCC-c-chHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 224 AVSFTYLKERKFFMLGEFLRDVGLGRKD-L-GNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 224 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
.+...|.+.|++++|...+++.....++ + ....+..+..++.+.|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444566667777777766665433221 1 2356777777888888888888777776643
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=9.4e-05 Score=74.05 Aligned_cols=225 Identities=11% Similarity=0.016 Sum_probs=165.9
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCc---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH-hH
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSS-SFVL---SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE-VY 152 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~ 152 (412)
+...|-.-|.-..+.++.++|.++.++.++. ++.- -...|.++++.-...|.-+...++|++..+.. ++. +|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHHH
Confidence 3455777777788888999999999888763 1111 23567788887777788888889999887542 333 78
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 040580 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL-IDKEGIRAVSFTYLK 231 (412)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 231 (412)
..|...|.+.+..++|-++++.|.++ +.-....|...+..+.+.++-+.|..++.+..+.-.+ -........++.-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 88889999999999999999999876 2235677888888888888888899988887765322 134455666667778
Q ss_pred cccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHccCChhH
Q 040580 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL--TTFNIRAVAFSRMSMFWD 307 (412)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~ 307 (412)
.|+.+.+..+|+..-...|. -...|+..|..=.++|+.+.+..+|++....++.|-. .-|.--+..--+.|+-+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 89999988888876444433 2388999999999999999999999999998887753 344444443344454433
No 99
>PLN02789 farnesyltranstransferase
Probab=98.57 E-value=0.00025 Score=62.64 Aligned_cols=128 Identities=11% Similarity=0.017 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 040580 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD-NSTLCALMLCYANNG-FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125 (412)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 125 (412)
+.+-..+...++.++|+.+.+++++. .|+ ..+|+.--.++...| ++++++..++.+.+.. +.+..+|+.....+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 33334444555666666666666553 232 223444333444444 3556666666655543 334445554444444
Q ss_pred ccCCH--HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 040580 126 RIGCF--NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179 (412)
Q Consensus 126 ~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 179 (412)
+.|+. +++..+++++.+.+ +-+-.+|+.....+...|+++++++.++++.+.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 44432 34455555554443 2333455555555555555555555555555543
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=1.1e-05 Score=66.24 Aligned_cols=119 Identities=6% Similarity=-0.026 Sum_probs=56.6
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH-HhcCC--hHHH
Q 040580 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF-GKQGQ--LELM 168 (412)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~a 168 (412)
.++.+++...++...+.+ +.|...|..|...|...|++++|...|++..+.. +-++..+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 334444444444444443 4445555555555555555555555555554433 23344444444432 34344 2555
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040580 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 169 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
.+++++..+.... +...+..+...+.+.|++++|...|+.+.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555544222 3344444444555555555555555555443
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=8.1e-06 Score=63.30 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=45.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 040580 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164 (412)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 164 (412)
+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++....+ +.++..+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444445555555555555554443 3344555555555555555555555555554433 3344455555555555555
Q ss_pred hHHHHHHHHHHHH
Q 040580 165 LELMENTLKEMVS 177 (412)
Q Consensus 165 ~~~a~~~~~~m~~ 177 (412)
+++|...|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.54 E-value=4.4e-05 Score=71.50 Aligned_cols=170 Identities=9% Similarity=-0.016 Sum_probs=99.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccH
Q 040580 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235 (412)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (412)
|.+-....+|.+|+.+++.++.+.. -..-|..+...|+..|+++.|+++|-+. ..++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 4445566777777777777766533 2334666667777777777777777442 2345567777777777
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHH
Q 040580 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315 (412)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 315 (412)
++|.++-.+... +......|-+-..-+-++|++.+|.+++-... .|+. .|..|-+.|..+..+++..+-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 777777665422 22223455555555666677777766654433 3442 355666777777666665542
Q ss_pred HhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 316 KHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 316 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
.- ..-..|-..+..-|-..|+...|++-|-+.
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 11 111234444555555566666666655444
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00015 Score=70.31 Aligned_cols=228 Identities=13% Similarity=0.035 Sum_probs=123.4
Q ss_pred ccccccccCCCChHHHHHHHHHhh-ccChh-----hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 040580 17 FNVPSHQTHPKNGDLARKIIRYRK-QEGFV-----DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90 (412)
Q Consensus 17 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 90 (412)
...+.++...+-..+-.++++++. +++++ .-|.+|-...+. +..+..+..+++.... .|+. ...+.
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~i------a~iai 1059 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APDI------AEIAI 1059 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chhH------HHHHh
Confidence 344556666777777788888765 23222 234444333333 3345555555554332 1221 11222
Q ss_pred hcCChHHHHHHHHHHHhCC---------------------CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCH
Q 040580 91 NNGFVLEAQVVWEELLSSS---------------------FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149 (412)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~---------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 149 (412)
..+-+++|..+|+..-..+ -.-...+|+.+..+-.+.|.+.+|.+-|-+. -||
T Consensus 1060 ~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDp 1133 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDP 1133 (1666)
T ss_pred hhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCc
Confidence 3333333333333211000 0113456777777777777777776666443 245
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 040580 150 EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229 (412)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 229 (412)
..|.-++....+.|.|++-.+.+.-.++..-.|...+ .||-+|++.+++.+.+.+. ..|+......+-+-|
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRC 1204 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHH
Confidence 6777777777788888777777766666655554433 5777777777776655544 125555555555555
Q ss_pred HhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHH
Q 040580 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQRE 276 (412)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 276 (412)
...+.++.|.-++..+ .-|.-|...+...|++..|...
T Consensus 1205 f~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred hhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 5666666555555532 4455555555555555555443
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=4.8e-05 Score=71.23 Aligned_cols=217 Identities=13% Similarity=0.050 Sum_probs=158.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (412)
..-..+...+...|-...|..+|+++. .|.-.|.+|...|+..+|..+..+-.+ -+|++..|..+....
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 334445666777788888888887765 366778888999999999888887766 368888888888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHH
Q 040580 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 239 (412)
....-+++|.++++....+ .-..+-....+.++++++.+.|+.-.+.+ +....+|-.+-.+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777888888888765443 11111111223678888888887766544 335667777777788888888888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 040580 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
+.|..-..-.++ +...||.+-.+|.+.|+-.+|...+.+..+.+ .-+-..|...+..-.+.|.+++|.+.+.++.+
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 888875444443 35889999999999999999999998888766 44455666677777888888888888877754
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.52 E-value=2.5e-05 Score=66.53 Aligned_cols=186 Identities=10% Similarity=-0.057 Sum_probs=122.0
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-H---HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cC-HHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD-N---STLCALMLCYANNGFVLEAQVVWEELLSSSFV-LS-VQV 116 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~-~~~ 116 (412)
....+..+...+...|+++.|...|++..... |+ . .++..+..++.+.|++++|...++.+.+.... |. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 55667778888899999999999999988753 33 2 46677888899999999999999999875411 11 124
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH
Q 040580 117 LSDLMDAYGRI--------GCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN 188 (412)
Q Consensus 117 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 188 (412)
+..+..++.+. |+.+.|.+.|+++.... +-++..+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~-------~~-------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN-------RL-------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH-------HH-------HHHHH
Confidence 55566666554 77889999999987654 222223322211100 000 00 00111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC
Q 040580 189 AFIIYYSRFGSLTEMETAYGRLKRSRH--LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249 (412)
Q Consensus 189 ~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 249 (412)
.+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|...++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 344567777888888888877776532 2235677777888888888888888777765544
No 106
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00089 Score=61.52 Aligned_cols=346 Identities=10% Similarity=-0.003 Sum_probs=198.2
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 040580 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129 (412)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 129 (412)
=++.+...+++++|.+..+++...+ +-+...+..-+-+..+.+++++|+.+.+.=.. +..+..-+---..+.-+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 3566778899999999999999865 44566677777788999999999854432211 11111111112233447899
Q ss_pred HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-------------------------C--
Q 040580 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS-------------------------V-- 182 (412)
Q Consensus 130 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-------------------------p-- 182 (412)
.|+|+..++-.. +.++.+...-.+.+.+.|++++|+++|..+.+.+.. |
T Consensus 95 ~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 95 LDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred HHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 999999988331 222336666677888999999999999998554311 1
Q ss_pred ChHHHHHHHH---HHHhcCCHHHHHHHHHHHHhCC-------CCCCHH-------HHHHHHHHHHhcccHHHHHHHHHHH
Q 040580 183 DSATGNAFII---YYSRFGSLTEMETAYGRLKRSR-------HLIDKE-------GIRAVSFTYLKERKFFMLGEFLRDV 245 (412)
Q Consensus 183 ~~~~~~~li~---~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~~ 245 (412)
...+|..+.+ .+...|++.+|+++++...+.+ -.-+.. .--.+.-.+...|+.++|..++..+
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 1224444433 3456899999999998883211 111111 2233445566789999999988775
Q ss_pred hcCC-CCc--chHHHHHHHHHHhcCC---------------------------------------------ChHHHHHHH
Q 040580 246 GLGR-KDL--GNLLWNLLLLSYAGNF---------------------------------------------KMKSLQREF 277 (412)
Q Consensus 246 ~~~~-~~~--~~~~~~~li~~~~~~g---------------------------------------------~~~~a~~~~ 277 (412)
-... .+. -...-|.|+..-.... ..+.+.++.
T Consensus 251 i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 251 IKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2222 111 0112222221111100 001111100
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHcc--CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHH-------
Q 040580 278 MRMSEAGFHPDLTTFNIRAVAFSRM--SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS------- 348 (412)
Q Consensus 278 ~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~------- 348 (412)
.. ..+..|. ..+.+++..+.+. ....++.+++...-+....-+....-.++......|+++.|.+++.
T Consensus 331 a~--lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 331 AS--LPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred Hh--CCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 00 0122333 3455555554432 2466788887776554322234555666777778999999999998
Q ss_pred -hc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc------Cc----hHHHHHHHHHHHHcCccccc
Q 040580 349 -KM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR------QR----KWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 349 -~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~------~~----~~~~~~l~~~~~~~g~~~~a 407 (412)
.+ ..+..|..+. .+...+.+ ++..-|..++.+-.. +. ..++.-+...-.+.|.-++|
T Consensus 408 ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 408 SSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred hhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 65 5566666554 34555555 666667777765332 11 23333344444456666655
No 107
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=0.00033 Score=61.84 Aligned_cols=119 Identities=8% Similarity=-0.051 Sum_probs=49.9
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC--hHHHH
Q 040580 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ--LELME 169 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~ 169 (412)
++.++|+.+++++++.. +-+..+|+..-.++.+.| ++++++..++++.+.+ +-+..+|+..-..+.+.|. .++++
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 34444444444444432 222334444333444444 3445555555444333 2222344433323333332 13444
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040580 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 170 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 214 (412)
.+++++.+...+ +..+|+....++.+.|+++++.+.++++.+.+
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 444444443221 34444444444444455555555555554443
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.49 E-value=6.4e-05 Score=70.47 Aligned_cols=172 Identities=13% Similarity=0.124 Sum_probs=122.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 040580 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269 (412)
Q Consensus 190 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 269 (412)
.+.+......|.+|..+++.+...+. ...-|..+.+.|+..|+++.|+++|-+. ..++-.|..|.++|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 44555667889999999998887643 3345777888999999999999999864 567788999999999
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHh
Q 040580 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSK 349 (412)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 349 (412)
++.|.++-.+.. |-......|-.-..-+-+.|++.+|.++|-..- .|+. .|..|-+.|..+.+.++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 999988766544 323344556666666778899988888775431 3543 46789999999999888877
Q ss_pred ccCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc
Q 040580 350 MNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR 385 (412)
Q Consensus 350 m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~ 385 (412)
-.-.. -..|...+-.-|.. |+...|.+.|.+...
T Consensus 876 ~h~d~--l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 876 HHGDH--LHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred hChhh--hhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 62111 11233344445644 999999988877543
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=4.7e-05 Score=62.73 Aligned_cols=126 Identities=19% Similarity=0.061 Sum_probs=60.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (412)
...+..+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.|+++.|..-|.+..+-. +-+|...|.+.-.+
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~ 178 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHH
Confidence 334444445555555555555555554433 4455555555555555555555555555444332 23334445554445
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 040580 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYG 208 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 208 (412)
.-.|+.+.|..++......+.. |...-..+.......|++++|+.+..
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555555555554443222 33333444444445555555554443
No 110
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.45 E-value=0.0016 Score=61.84 Aligned_cols=360 Identities=11% Similarity=-0.048 Sum_probs=188.7
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS-FVLSVQVLSDLM 121 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li 121 (412)
|...|..+--++...|+++.+.+.|++.... ..-..+.|+.+-..+...|.-..|..+.+.-.... -++|...+-..-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 6666777777777788888888888776543 23356667777777777777667777666654432 122333333333
Q ss_pred HHHHc-cCCHHHHHHHHHHHhhc----CCCCCHHhHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCC-CCCh
Q 040580 122 DAYGR-IGCFNEIISIIDQVSCR----NADLLPEVYSRAISCFGKQ-----------GQLELMENTLKEMVSRGF-SVDS 184 (412)
Q Consensus 122 ~~~~~-~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~-~p~~ 184 (412)
..|.+ .+.+++++.+-.+.... .-...+..|-.+--+|... ....++++.+++..+.+. .|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 33433 24455554444443321 0112233444433333211 124455566665555322 2222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-CCCc-----------
Q 040580 185 ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG-RKDL----------- 252 (412)
Q Consensus 185 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~----------- 252 (412)
..| +---|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+..-.. +.+.
T Consensus 481 if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 481 IFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 222 22234455566666666666666544555566666665666666666665555432111 1100
Q ss_pred -------chHHHHHHHHHHh-----------------------cCCChHHHHHHHHHH-----------------HHcCC
Q 040580 253 -------GNLLWNLLLLSYA-----------------------GNFKMKSLQREFMRM-----------------SEAGF 285 (412)
Q Consensus 253 -------~~~~~~~li~~~~-----------------------~~g~~~~a~~~~~~m-----------------~~~~~ 285 (412)
-..|...++...- ...+..++....+.+ ....+
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 0011111111110 000111111111110 00011
Q ss_pred CCcH--------hHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc-cCCCCC
Q 040580 286 HPDL--------TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSP 356 (412)
Q Consensus 286 ~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~p 356 (412)
.|.. ..|......+.+.++.++|...+.+..+.- .-.+..|...-..+...|..++|.+.|... ..++ -
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-~ 716 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-D 716 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-C
Confidence 1221 123345556778888888887777654422 225556665556667788889999988776 3222 1
Q ss_pred CcccHHHHHHHHhc-CCcccHHH--HHHHhc---cCchHHHHHHHHHHHHcCccccc
Q 040580 357 VVSTDPYVFEAFGK-GDFHSSSE--AFLEFK---RQRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 357 ~~~~~~~li~~~~~-~~~~~a~~--~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a 407 (412)
.+.....+-..+.+ |+..-|.. ++.++. +.+...|-.++.++-+.|+.++|
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 23334556666666 76666666 666544 47899999999999999999887
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=2e-05 Score=61.10 Aligned_cols=108 Identities=6% Similarity=-0.224 Sum_probs=61.6
Q ss_pred HHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 040580 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS 113 (412)
Q Consensus 34 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 113 (412)
..+++..+.++..+......+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+...+.+ +.+
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~ 91 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASH 91 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 33444444444444445555566666666666666665542 2345555666666666666666666666666543 445
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 040580 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143 (412)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 143 (412)
...+..+..++.+.|+.++|...|+.....
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566666666666666666666666665543
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=6.4e-05 Score=68.54 Aligned_cols=217 Identities=10% Similarity=0.038 Sum_probs=143.9
Q ss_pred ccccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHH
Q 040580 21 SHQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLE 97 (412)
Q Consensus 21 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 97 (412)
.-+.+.|++.+|.-.|+...+. +...|-.|....+.+++-..|+..+.+..+.. +-|....-.|.-.|...|.-..
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3456778888888888776654 55667777778888888888888888877753 2256667777777888887777
Q ss_pred HHHHHHHHHhCCCCc--------CHHHHHHHHHHHHccCCHHHHHHHHHHHhhc-CCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 98 AQVVWEELLSSSFVL--------SVQVLSDLMDAYGRIGCFNEIISIIDQVSCR-NADLLPEVYSRAISCFGKQGQLELM 168 (412)
Q Consensus 98 a~~~~~~m~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a 168 (412)
|...++.-++...+- +...-+. ..+.....+....++|-++... +..+||++...|--.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 877777665432110 0000000 1222333445556666655433 3347788888888888888888888
Q ss_pred HHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcccHHHHHHHHHH
Q 040580 169 ENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID-KEGIRAVSFTYLKERKFFMLGEFLRD 244 (412)
Q Consensus 169 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~ 244 (412)
.+.|+..... +| |...||.|-..++...+..+|...|++.++. +|+ +.+...|.-.|...|.+++|.+.|-.
T Consensus 450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 8888888774 55 5677888888888888888888888887764 343 34455556667777777776665543
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=4.9e-05 Score=62.37 Aligned_cols=120 Identities=10% Similarity=-0.001 Sum_probs=78.2
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH-HccCC--HHH
Q 040580 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY-GRIGC--FNE 132 (412)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~--~~~ 132 (412)
..++.+++...++...+.. +.|...|..+...|...|++++|...|+...+.. +.+...+..+..++ ...|+ .++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4455566666666655543 4466667777777777777777777777777654 44566666666653 55555 367
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 133 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
|.+++++..+.+ +-++.++..+...+.+.|++++|+..|+++.+.
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777776655 445566777777777777777777777777665
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=7.9e-05 Score=61.41 Aligned_cols=157 Identities=11% Similarity=0.030 Sum_probs=92.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 040580 118 SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197 (412)
Q Consensus 118 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 197 (412)
..+-..+.-.|+-+....+........ +-++...+..+....+.|++..|+..|.+..... ++|...|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445556666666666666666654332 3344455556777777777777777777766542 34667777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHH
Q 040580 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277 (412)
Q Consensus 198 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 277 (412)
|+.++|..-|.+..+... -++...+.+.-.|.-.|+++.|..++......+.. |..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777777665432 23444555555555555666665555554444332 2355555555555566666665544
Q ss_pred H
Q 040580 278 M 278 (412)
Q Consensus 278 ~ 278 (412)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 115
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.41 E-value=0.00077 Score=63.84 Aligned_cols=363 Identities=13% Similarity=0.010 Sum_probs=228.8
Q ss_pred cccccccccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCC-CHHhHHHHHHHHHh
Q 040580 16 RFNVPSHQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLP-DNSTLCALMLCYAN 91 (412)
Q Consensus 16 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 91 (412)
+..+.-+....|+++.+.+.|++...- ....|+.+-..+...|.-..|..+++.-....-.| ++..+-..-..|.+
T Consensus 326 ~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e 405 (799)
T KOG4162|consen 326 FDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIE 405 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHh
Confidence 444455567888999999999886553 45578888888888888888888887765433224 33444433444443
Q ss_pred -cCChHHHHHHHHHHHhC--CC--CcCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 040580 92 -NGFVLEAQVVWEELLSS--SF--VLSVQVLSDLMDAYGRI-----------GCFNEIISIIDQVSCRNADLLPEVYSRA 155 (412)
Q Consensus 92 -~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~l 155 (412)
.+.+++++.+-.+.... +. ......|..+.-+|... ....++.+.+++..+.+ +-||.+.-.+
T Consensus 406 ~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~l 484 (799)
T KOG4162|consen 406 RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYL 484 (799)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 46677777766666551 11 12233444444444322 22456777888887766 4555544444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC------------------C
Q 040580 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS-RH------------------L 216 (412)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~------------------~ 216 (412)
---|+..++++.|++..++..+-+-.-+...|..+.-.+...+++.+|+.+.+..... |. .
T Consensus 485 alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e 564 (799)
T KOG4162|consen 485 ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDRE 564 (799)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHH
Confidence 4456777888888888888888766667778888887888888888888887665432 11 0
Q ss_pred CCHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHH-----------Hh----cC----CCCcc-
Q 040580 217 IDKEGIRAVSFTYLKE-----------------------RKFFMLGEFLRD-----------VG----LG----RKDLG- 253 (412)
Q Consensus 217 ~~~~~~~~li~~~~~~-----------------------~~~~~a~~~~~~-----------~~----~~----~~~~~- 253 (412)
....|...++..+-+. ++..++.+..+. +. .+ .+.++
T Consensus 565 ~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~ 644 (799)
T KOG4162|consen 565 EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS 644 (799)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc
Confidence 0111222222222200 011111111000 00 01 11122
Q ss_pred -----hHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HhhH
Q 040580 254 -----NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD-LVTY 327 (412)
Q Consensus 254 -----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~ 327 (412)
...|......+.+.+..++|...+.+....- .-....|...-..+...|+.++|.+.|..... +.|+ ....
T Consensus 645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~ 721 (799)
T KOG4162|consen 645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSM 721 (799)
T ss_pred hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHH
Confidence 2456677788889999999998888877532 33456676666778889999999999988765 5564 5677
Q ss_pred HHHHHHHHhccccchHHH--HHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHh
Q 040580 328 GCVVDAYLDKRLGRNLDF--GLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEF 383 (412)
Q Consensus 328 ~~li~~~~~~~~~~~a~~--~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~ 383 (412)
.++...+.+.|+...+.. ++..+ +.++ -+...|-.+-..+.+ |+.++|.+-|..-
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 888899999998888888 77777 4443 345556666667766 9999999888753
No 116
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.40 E-value=4.6e-07 Score=51.18 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 288 (412)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 117
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.38 E-value=6.6e-07 Score=50.53 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 183 (412)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566677777777777777777777776666665
No 118
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.35 E-value=8e-07 Score=49.80 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP 287 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 287 (412)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655555
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=3.4e-05 Score=59.25 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=59.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (412)
.....+...+...|++++|.+.++.+...+ +.+...+..+..++.+.|++++|...+++....+ +.++..+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555666666666666666666544 4455666666666666666666666666665443 34455566666666
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 040580 160 GKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~ 178 (412)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666553
No 120
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0018 Score=63.36 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=30.4
Q ss_pred cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCC--CCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 42 EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL--PDNSTLCALMLCYANNGFVLEAQVVWEELL 106 (412)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 106 (412)
.|...|+.++.- .+ .--.+++++..+.+++ .|++.....+.++...+-+.+-.++++.+.
T Consensus 950 ~D~~LW~~VL~e---~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIv 1011 (1666)
T KOG0985|consen 950 SDPDLWAKVLNE---EN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIV 1011 (1666)
T ss_pred cChHHHHHHHhc---cC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 366666655531 11 1123444555444432 244555555666666666666666666654
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.33 E-value=0.00055 Score=66.84 Aligned_cols=183 Identities=9% Similarity=-0.034 Sum_probs=132.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHH
Q 040580 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154 (412)
Q Consensus 75 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 154 (412)
...+...+-.|.....+.|..++|..+++...+.. +-+......+...+.+.+++++|+..+++....+ +-++.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 45568888888899999999999999999998864 4456778888899999999999999999998765 556678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 040580 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234 (412)
Q Consensus 155 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (412)
+..++.+.|++++|..+|++....+. -+..++..+-.++-..|+.++|...|+...+..- +....|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHHH------HH
Confidence 88889999999999999999988432 2467788888888999999999999998876532 2334444333 23
Q ss_pred HHHHHHHHHHHhcCC----CCcchHHHHHHHHHHhcC
Q 040580 235 FFMLGEFLRDVGLGR----KDLGNLLWNLLLLSYAGN 267 (412)
Q Consensus 235 ~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~ 267 (412)
+..-..++++++... .+....+...+|.-|.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 334444555543322 222234455555555543
No 122
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.33 E-value=9.4e-07 Score=49.50 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=20.6
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCC
Q 040580 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLP 77 (412)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 77 (412)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.0021 Score=58.53 Aligned_cols=355 Identities=12% Similarity=0.027 Sum_probs=215.3
Q ss_pred cccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCChHH
Q 040580 22 HQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD-NSTLCALMLCYANNGFVLE 97 (412)
Q Consensus 22 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~ 97 (412)
+....|+++.|...|.+... +|-+.|+.=..+|+..|++++|++=-.+-.+ +.|+ +..|+....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 45688999999999987553 4777788888999999999999887666665 4565 6779999999999999999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHH------HHhhc---CCCCCHHhHHHHHHHHHhc------
Q 040580 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID------QVSCR---NADLLPEVYSRAISCFGKQ------ 162 (412)
Q Consensus 98 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~------~m~~~---~~~~~~~~~~~li~~~~~~------ 162 (412)
|..-|.+-++.. +.|...++.+..++..... +.+.|. .+... ........|..++...-+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999998875 6677888888888721110 111111 11000 0000111333333332211
Q ss_pred -CChHHHHHHHHHHH--------HCC-------CCC------------C----------hHHHHHHHHHHHhcCCHHHHH
Q 040580 163 -GQLELMENTLKEMV--------SRG-------FSV------------D----------SATGNAFIIYYSRFGSLTEME 204 (412)
Q Consensus 163 -g~~~~a~~~~~~m~--------~~g-------~~p------------~----------~~~~~~li~~~~~~g~~~~a~ 204 (412)
.+.+......-.+. ..| ..| | ..-...+.++.-+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 01111111111110 001 111 0 111445667777778888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCc----c--hHHHHHHHHHHhcCCChHHHHHHHH
Q 040580 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL----G--NLLWNLLLLSYAGNFKMKSLQREFM 278 (412)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~--~~~~~~li~~~~~~g~~~~a~~~~~ 278 (412)
+-+....... .+..-++....+|...|.+.+....-..-...+... + ...+..+..+|.+.++++.|+..|.
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 8888877665 455566666777777777665554444322222111 0 1122223446677788999999998
Q ss_pred HHHHcCCCCcHhHHH-------------------------HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 040580 279 RMSEAGFHPDLTTFN-------------------------IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333 (412)
Q Consensus 279 ~m~~~~~~p~~~~~~-------------------------~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 333 (412)
+.......|+..+=. .=...+.+.|++..|...|+++++.. +-|...|..-.-+
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC 401 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 877665566543321 11224667889999999999998876 3378889888889
Q ss_pred HHhccccchHHHHHHhc-cCCCCCCc-ccHHHHHHHH-hcCCcccHHHHHHHhccCc
Q 040580 334 YLDKRLGRNLDFGLSKM-NLDDSPVV-STDPYVFEAF-GKGDFHSSSEAFLEFKRQR 387 (412)
Q Consensus 334 ~~~~~~~~~a~~~~~~m-~~~~~p~~-~~~~~li~~~-~~~~~~~a~~~~~~~~~~~ 387 (412)
|.+.|.+..+.+=.+.. .. .|+. .-|..=-.++ .-.++++|.+.|.+-...|
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999888887766555 33 2321 1121111111 1267777777777765543
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.30 E-value=0.00078 Score=66.71 Aligned_cols=146 Identities=9% Similarity=0.068 Sum_probs=70.9
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS-TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 121 (412)
+...|..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++...+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 4556667777777777777777777755543 34432 233333344555554444433 2 22
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 040580 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201 (412)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 201 (412)
.......++.-+..+.+.|.+ ..-+...+-.+..+|-+.|+.+++..+|+++.+... -|....|.+...++.. +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHH
Confidence 222222223222222223322 112223444555555555556666666655555431 1445555555555555 555
Q ss_pred HHHHHHHHHH
Q 040580 202 EMETAYGRLK 211 (412)
Q Consensus 202 ~a~~~~~~~~ 211 (412)
+|..++....
T Consensus 167 KA~~m~~KAV 176 (906)
T PRK14720 167 KAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 125
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.26 E-value=1.4e-05 Score=56.70 Aligned_cols=79 Identities=11% Similarity=0.196 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCcCHHHHH
Q 040580 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGL-LPDNSTLCALMLCYANNG--------FVLEAQVVWEELLSSSFVLSVQVLS 118 (412)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~ 118 (412)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +....+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455566666888888888888888888 788888888888776643 2445667777777777788888888
Q ss_pred HHHHHHHc
Q 040580 119 DLMDAYGR 126 (412)
Q Consensus 119 ~li~~~~~ 126 (412)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77776654
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.00036 Score=68.11 Aligned_cols=179 Identities=9% Similarity=0.042 Sum_probs=137.6
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD-NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 121 (412)
++..+-.|.....+.|..++|..+++...+. .|+ ......+...+.+.+++++|...+++..... +-+....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 5667888888889999999999999999985 566 4557778899999999999999999999876 56778889999
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 040580 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201 (412)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 201 (412)
.++.+.|++++|..+|++....+ +-++.++..+-..+...|+.++|...|++..+. ..|....|+..+.- +.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~------~~ 233 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLVD------LN 233 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHHH------HH
Confidence 99999999999999999998743 445679999999999999999999999998775 23455566655432 33
Q ss_pred HHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhc
Q 040580 202 EMETAYGRLKRSR----HLIDKEGIRAVSFTYLKE 232 (412)
Q Consensus 202 ~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~ 232 (412)
.-...++.+.-.+ ......+....|.-|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 3444555554333 233344455555555554
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.001 Score=65.98 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=142.7
Q ss_pred hhhccccccccccCCCChHHHHHHHHHhhc--cChh-hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 040580 12 FKFKRFNVPSHQTHPKNGDLARKIIRYRKQ--EGFV-DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC 88 (412)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (412)
....+..|+..|...+++++|.++.+...+ |+.. .|-.+...+.+.++..++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 345567888999999999999999987654 3332 333333355566665555444 23444
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 168 (412)
.....++..+..++..|... .-+...+..+..+|-+.|+.++|..+++++.+.+ +-++.+.|.+.-.|... ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 44555555555556666653 3445577778888888888888888888888776 56677888888888877 88888
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Q 040580 169 ENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG 248 (412)
Q Consensus 169 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 248 (412)
++++.+.... +...+++..+..+|..+...... +...+-.+.......-.+..
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~~~----------- 221 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREFTR----------- 221 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhccch-----------
Confidence 8877776654 55555666777777766654321 11111111111111100111
Q ss_pred CCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 040580 249 RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300 (412)
Q Consensus 249 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 300 (412)
-..++-.+-..|-..++++++..+++...+.. +-|.....-++..|.
T Consensus 222 ----~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 ----LVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred ----hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 12445555556666677777777777776543 224445555555554
No 128
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.25 E-value=0.0024 Score=54.99 Aligned_cols=292 Identities=12% Similarity=0.028 Sum_probs=198.1
Q ss_pred cccccccCCCChHHHHHHHHHhhccChhhHHHHHH---HHhcCCChhHHHHHHHHHHhcCCCCCHHhHH-HHHHHHHhcC
Q 040580 18 NVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVE---DLGRKKKPHLAHQLVNTVKSEGLLPDNSTLC-ALMLCYANNG 93 (412)
Q Consensus 18 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~ 93 (412)
.+...+.-.|++.+|+.-+....+-|+..|-++.+ .|...|+-.-|+.=|.+..+. +||-..-. .-...+.++|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 34455666788888888888888878877777654 667788888888888888874 77754322 2334577899
Q ss_pred ChHHHHHHHHHHHhCCCCc--CHH------------HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 040580 94 FVLEAQVVWEELLSSSFVL--SVQ------------VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159 (412)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~~--~~~------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (412)
.++.|..=|+.+++..... +.. .....+..+.-.|+...|++....+.+-. +.+...|..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 9999999999999864211 111 12234455667789999999998887765 56777888888999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----------
Q 040580 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY---------- 229 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---------- 229 (412)
...|++..|+.=++...+..-. +..++--+-..+...|+.+.++...++..+. .||....-..-.-+
T Consensus 200 i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999998777666553222 4455555667777889999888888888765 35544322222211
Q ss_pred ---HhcccHHHHHHHHHHHhcCCCCcch---HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHcc
Q 040580 230 ---LKERKFFMLGEFLRDVGLGRKDLGN---LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD-LTTFNIRAVAFSRM 302 (412)
Q Consensus 230 ---~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 302 (412)
...+++-++.+-.+..-...+.... ..+..+-.++...|++.+|++.-.+..+. .|| +.++---..+|.-.
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhh
Confidence 2234444444444443333333112 33445566777789999999988888754 565 77777777888888
Q ss_pred CChhHHHHHHHHHHh
Q 040580 303 SMFWDLHLSLEHMKH 317 (412)
Q Consensus 303 g~~~~a~~~~~~m~~ 317 (412)
..++.|+.-|+...+
T Consensus 355 E~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888887777655
No 129
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.25 E-value=2.2e-05 Score=70.95 Aligned_cols=120 Identities=10% Similarity=-0.031 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCC--cchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 040580 218 DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD--LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295 (412)
Q Consensus 218 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 295 (412)
+......+++.+....+++++..++.+.+..+.. .-..|..++|..|.+.|..++++.+++.=...|+-||..||+.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444444444444444555555555544333221 11245568888888888888888888888888888888888888
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 040580 296 AVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337 (412)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 337 (412)
|+.+.+.|++..|.++..+|..++.-.+..|+..-+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887776666667776666666654
No 130
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.23 E-value=2.8e-05 Score=55.26 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHccCC--------hhHHHHHHHHHHhCCCCCCHhh
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGF-HPDLTTFNIRAVAFSRMSM--------FWDLHLSLEHMKHESVGPDLVT 326 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~--------~~~a~~~~~~m~~~g~~p~~~~ 326 (412)
+-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.+++.- +-+.+.+|+.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666667999999999999999999 8999999999999887543 3456778899999999999999
Q ss_pred HHHHHHHHHhc
Q 040580 327 YGCVVDAYLDK 337 (412)
Q Consensus 327 ~~~li~~~~~~ 337 (412)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 131
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.22 E-value=3.1e-05 Score=70.10 Aligned_cols=121 Identities=12% Similarity=0.015 Sum_probs=61.1
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 040580 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSS--SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS 153 (412)
Q Consensus 76 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 153 (412)
+.+.....++++.+....+++.+..++-..... ....-..|.+++++.|.+.|..+.++.+++.=...|+.||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555555444432 111112233455555555555555555555555555555555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 040580 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196 (412)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 196 (412)
.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 5555555555555555555555554444444444444444443
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=0.00014 Score=55.88 Aligned_cols=111 Identities=9% Similarity=0.019 Sum_probs=87.3
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040580 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180 (412)
Q Consensus 101 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 180 (412)
.++...... +.+......+...+...|++++|.+.|+.....+ +.++..+..+...+...|++++|...+++..+.+.
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455555543 3345667778888889999999999999987765 56777888899999999999999999998877642
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040580 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 181 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 214 (412)
.+...+..+...+...|+++.|...|+...+..
T Consensus 83 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 -DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 245666777788889999999999998888754
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.0015 Score=58.82 Aligned_cols=114 Identities=15% Similarity=0.028 Sum_probs=59.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 040580 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMEN 170 (412)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 170 (412)
..|++++|+..++.+++.- +-|...+......+.+.++.++|.+.++.+.... +-.+...-.+..++.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHH
Confidence 4555555555555555442 3344444555555555555555555555554432 1223344455555555555555555
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 040580 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207 (412)
Q Consensus 171 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 207 (412)
+++....... -|...|..|..+|...|+..++....
T Consensus 396 ~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 396 ILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHH
Confidence 5555554421 24555555555555555555544443
No 134
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.00089 Score=63.92 Aligned_cols=320 Identities=8% Similarity=-0.077 Sum_probs=202.4
Q ss_pred ChhhHHHHHH--HHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-C--------CC
Q 040580 43 GFVDCASLVE--DLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS-S--------FV 111 (412)
Q Consensus 43 ~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~~ 111 (412)
|..|-.++++ .|...|+.+.|.+-++..+ +...|..+.+.|.+..+++-|.-.+..|... | ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 7777777776 4677899999998887765 4578999999999998888887766666531 1 12
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 040580 112 LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191 (412)
Q Consensus 112 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 191 (412)
|+ .+=....-.....|.+++|+.+|++-++. ..|=..|-..|.|++|.++-+.=-+-.+ ..||-...
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 22 22222233345779999999999988653 3344456678999999988765333222 23444444
Q ss_pred HHHHhcCCHHHHHHHHHHH-----------HhC--------CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCc
Q 040580 192 IYYSRFGSLTEMETAYGRL-----------KRS--------RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252 (412)
Q Consensus 192 ~~~~~~g~~~~a~~~~~~~-----------~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 252 (412)
.-+-..++.+.|.+.|+.. .+. .-..|...|..-...+-..|+.|.|..+++..
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A------- 938 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA------- 938 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-------
Confidence 5555566677776666542 111 01234555666666666778888888888854
Q ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHh----------CCCCC
Q 040580 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH----------ESVGP 322 (412)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----------~g~~p 322 (412)
.-|-+++...|-.|+.++|-++-++ .-|....-.|.+.|.+.|++.+|..+|.+... +++
T Consensus 939 --~D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~-- 1008 (1416)
T KOG3617|consen 939 --KDYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM-- 1008 (1416)
T ss_pred --hhhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--
Confidence 5677888888999999999887665 33555666789999999999999999877542 222
Q ss_pred CHhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHh-------------cc-Cc
Q 040580 323 DLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEF-------------KR-QR 387 (412)
Q Consensus 323 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~-------------~~-~~ 387 (412)
+...+|.- ......+.-.|.++|++..-. +...+..|-+ |.+.+|.++-.+- .+ .|
T Consensus 1009 ~d~L~nla--l~s~~~d~v~aArYyEe~g~~-------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD 1079 (1416)
T KOG3617|consen 1009 KDRLANLA--LMSGGSDLVSAARYYEELGGY-------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD 1079 (1416)
T ss_pred HHHHHHHH--hhcCchhHHHHHHHHHHcchh-------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC
Confidence 12222211 122233444555666665211 1122233434 6666665544331 11 56
Q ss_pred hHHHHHHHHHHHHcCccccc
Q 040580 388 KWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~a 407 (412)
+...+-..+-|+....+++|
T Consensus 1080 p~ll~RcadFF~~~~qyekA 1099 (1416)
T KOG3617|consen 1080 PKLLRRCADFFENNQQYEKA 1099 (1416)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 77777777777777777766
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=7.5e-05 Score=67.31 Aligned_cols=122 Identities=17% Similarity=0.072 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc
Q 040580 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162 (412)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 162 (412)
..|+..+...++++.|..+++++.+.. |++ ...+++.+...++-.+|.+++++..... +-+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344455555566666666666666543 332 2335555555566666666666655432 33444555555556666
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040580 163 GQLELMENTLKEMVSRGFSVDS-ATGNAFIIYYSRFGSLTEMETAYGRLK 211 (412)
Q Consensus 163 g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 211 (412)
++++.|+.+.+++.+. .|+. .+|..|..+|.+.|+++.|...++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666653 3433 466666666666666666666666554
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=0.0018 Score=58.40 Aligned_cols=117 Identities=12% Similarity=-0.079 Sum_probs=67.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcccHH
Q 040580 159 FGKQGQLELMENTLKEMVSRGFSVD-SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID-KEGIRAVSFTYLKERKFF 236 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 236 (412)
+...|++++|+..+..+.+. .|+ ..........+.+.|+.++|.+.++.+.... |+ ....-.+..+|.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence 34556666666666666554 333 3333444455666666666666666666542 33 445555566666666666
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHH
Q 040580 237 MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280 (412)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 280 (412)
+|..+++......++ |+..|..|..+|...|+..++..-..++
T Consensus 392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666666654333332 3466666666666666666666555443
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.14 E-value=0.00088 Score=65.26 Aligned_cols=168 Identities=12% Similarity=0.063 Sum_probs=120.4
Q ss_pred cccCCchhhccccccccccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcC-CCCCHHh
Q 040580 6 LSLHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEG-LLPDNST 81 (412)
Q Consensus 6 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~ 81 (412)
+.+..+..|.+..|...|....+...|.+.|+...+- +..++....+.|++..+++.|..+.-..-+.. ...-...
T Consensus 485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n 564 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN 564 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence 3455567788888888888888888899999887664 66778889999999999999988833222211 0011122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHH--HHHHH
Q 040580 82 LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR--AISCF 159 (412)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~ 159 (412)
|....-.+-+.++...+..-|+...+.+ |.|...|..+..+|.++|++..|.++|.+...- .|+. .|.. ..-.-
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~e 640 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVME 640 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHH
Confidence 3334444667788888888888888875 668899999999999999999999999988542 2222 3332 23345
Q ss_pred HhcCChHHHHHHHHHHHH
Q 040580 160 GKQGQLELMENTLKEMVS 177 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~ 177 (412)
+..|.+.++++.+.....
T Consensus 641 cd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 678889999888876643
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=4.9e-05 Score=68.48 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=103.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 125 (412)
.-..+++.+...++++.|+.+|+++.+.. |+ ....+.+.+...++-.+|.++.++.++.. +.+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34566777788899999999999999873 55 44457788888888899999999988764 567888888889999
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMV 176 (412)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 176 (412)
+.++.+.|+++.+++.... +-+-.+|..|..+|.+.|+++.|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999997653 3344499999999999999999999998775
No 139
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.11 E-value=0.0049 Score=53.12 Aligned_cols=176 Identities=7% Similarity=-0.056 Sum_probs=89.1
Q ss_pred HHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhH
Q 040580 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWD 307 (412)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 307 (412)
.+...|+...|++.+..+-...+- |...|..-..+|...|++..|+.=++...+.. .-|..++--+-..+-..|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 344456666666666654322221 34556666677777777777765444444322 2234455555556666677777
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHH-------------HHHhccccchHHHHHHhc-cCCCCCCcc---cHHHHHHHHhc
Q 040580 308 LHLSLEHMKHESVGPDLVTYGCVVD-------------AYLDKRLGRNLDFGLSKM-NLDDSPVVS---TDPYVFEAFGK 370 (412)
Q Consensus 308 a~~~~~~m~~~g~~p~~~~~~~li~-------------~~~~~~~~~~a~~~~~~m-~~~~~p~~~---~~~~li~~~~~ 370 (412)
.+...++..+ +.||...+-..-. .....+++-++.+..+.. +..+..... .+..+-.++..
T Consensus 242 sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 242 SLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccc
Confidence 6666666554 4455432221111 112234444444444443 333331222 23334344444
Q ss_pred -CCcccHHHHHHHhcc---CchHHHHHHHHHHHHcCccccc
Q 040580 371 -GDFHSSSEAFLEFKR---QRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 371 -~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 407 (412)
+.+-+|++...+... .|..++.--..+|.-...|+.|
T Consensus 320 d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHH
Confidence 777777776665433 4455665555666555544444
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.09 E-value=0.00034 Score=54.37 Aligned_cols=126 Identities=11% Similarity=0.038 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVD--SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK--EGIRAVS 226 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li 226 (412)
.|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+.+......|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444443 25555555555666555421110 111112334455566666666666666554422211 1222234
Q ss_pred HHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHH
Q 040580 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279 (412)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 279 (412)
..+...|++++|...++....... ....+......|.+.|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444445555555555544222222 224444555556666666666655543
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.08 E-value=0.0084 Score=54.86 Aligned_cols=356 Identities=8% Similarity=0.014 Sum_probs=193.2
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
|..+|+.||+-+... ..+++.+.++++... .+-.+..|..-|..-.+.++++.++.+|.+-+.. ..+...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHH
Confidence 899999999987666 899999999999864 3446778899999999999999999999988765 456777777776
Q ss_pred HHHcc-CCHHH----HHHHHHHH-hhcCCCCCHH-hHHHHHHHH---------HhcCChHHHHHHHHHHHHCCCCC----
Q 040580 123 AYGRI-GCFNE----IISIIDQV-SCRNADLLPE-VYSRAISCF---------GKQGQLELMENTLKEMVSRGFSV---- 182 (412)
Q Consensus 123 ~~~~~-~~~~~----a~~~~~~m-~~~~~~~~~~-~~~~li~~~---------~~~g~~~~a~~~~~~m~~~g~~p---- 182 (412)
.--+. |+... ..+.|+-. .+.|+.+-.. .|+..+.-+ ..+.+++...+++.++...-+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 54433 33322 33334432 2333333222 455544332 33345677778888876542210
Q ss_pred --ChHHHHHHHHHHH-------hcCCHHHHHHHHHHHHh--CCCCCCH--------------------------------
Q 040580 183 --DSATGNAFIIYYS-------RFGSLTEMETAYGRLKR--SRHLIDK-------------------------------- 219 (412)
Q Consensus 183 --~~~~~~~li~~~~-------~~g~~~~a~~~~~~~~~--~~~~~~~-------------------------------- 219 (412)
|-.+|..=|+... +...+..|+++++++.. .|+.-..
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 1112221121111 22334455555555542 1111000
Q ss_pred -----------HHHHHHHHHHHh---------------------ccc-------HHHHHHHHHHHhcCCCCcchHHHHHH
Q 040580 220 -----------EGIRAVSFTYLK---------------------ERK-------FFMLGEFLRDVGLGRKDLGNLLWNLL 260 (412)
Q Consensus 220 -----------~~~~~li~~~~~---------------------~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (412)
.+|...+..+.- .|+ .+++..+++..-......+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111111 111 12222222221000000011111111
Q ss_pred HHHH---hcCCChHHHHHHHHHHHH-cCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHH
Q 040580 261 LLSY---AGNFKMKSLQREFMRMSE-AGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP-DLVTYGCVVDAYL 335 (412)
Q Consensus 261 i~~~---~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~ 335 (412)
..-= ..-...+.....+++... ..+.|+ .+|-.+|+.-.+..-++.|..+|.+..+.+..+ .+...++++.-||
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 1000 000123444445555442 222333 466677777777777888888888888877777 7777788887776
Q ss_pred hccccchHHHHHHhc--cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc------CchHHHHHHHHHHHHcCcccc
Q 040580 336 DKRLGRNLDFGLSKM--NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR------QRKWTYRKLIAVYLKKQLRRN 406 (412)
Q Consensus 336 ~~~~~~~a~~~~~~m--~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~ 406 (412)
. ++..-|.++|+.= +.+..|- --...++.+.. ++-..+.-+|++..+ ....+|..+++-=..-|+...
T Consensus 414 s-kD~~~AfrIFeLGLkkf~d~p~--yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 414 S-KDKETAFRIFELGLKKFGDSPE--YVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred c-CChhHHHHHHHHHHHhcCCChH--HHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 4 5666788888765 3333332 12344555566 666667777776554 235678888777666676544
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.00012 Score=60.36 Aligned_cols=179 Identities=13% Similarity=0.080 Sum_probs=123.5
Q ss_pred CCCChHHHH-HHHHHhhcc----ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 040580 25 HPKNGDLAR-KIIRYRKQE----GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQ 99 (412)
Q Consensus 25 ~~~~~~~A~-~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 99 (412)
..++.++-. ++.+.+..+ +......-...|...|++++|++...... +.+....=+..+.+..+++.|.
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAE 157 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 344444433 22333334456788999999999887621 3333333445577888999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHH----ccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 100 VVWEELLSSSFVLSVQVLSDLMDAYG----RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175 (412)
Q Consensus 100 ~~~~~m~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 175 (412)
+.++.|.+.+ +..|.+-|..++. -.+.+.+|.-+|++|.++ .+|++.+.+-...++...|++++|..++++.
T Consensus 158 ~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 158 KELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 9999998743 5556665555554 346789999999999765 4899999999999999999999999999999
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCC
Q 040580 176 VSRGFSVDSATGNAFIIYYSRFGS-LTEMETAYGRLKRSR 214 (412)
Q Consensus 176 ~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~ 214 (412)
..+... +..+...+|..-...|. .+-..+.+.++....
T Consensus 234 L~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 234 LDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 887544 56666666665556665 455567777776553
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00035 Score=54.31 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=9.1
Q ss_pred HHHHccCCHHHHHHHHHHHhh
Q 040580 122 DAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~ 142 (412)
..+...|++++|...|+....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 334444444444444444433
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0053 Score=51.03 Aligned_cols=50 Identities=20% Similarity=0.160 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhC
Q 040580 268 FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318 (412)
Q Consensus 268 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 318 (412)
+...+|.-+|++|.++ ..|+..+.+-...++...|++++|..++++....
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455555666666542 2455555555555555666666666666555543
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.02 E-value=8.3e-06 Score=44.41 Aligned_cols=29 Identities=38% Similarity=0.532 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSRG 179 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 179 (412)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.00 E-value=8.8e-06 Score=44.31 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=17.8
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEG 74 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 74 (412)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 147
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.00 E-value=6.7e-05 Score=60.32 Aligned_cols=61 Identities=8% Similarity=0.092 Sum_probs=47.2
Q ss_pred HHHHHHHHh--hccChhhHHHHHHHHhcC-----CChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh
Q 040580 31 LARKIIRYR--KQEGFVDCASLVEDLGRK-----KKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN 91 (412)
Q Consensus 31 ~A~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 91 (412)
.-...|+.. ..++..+|..+++.+.+. |..+=....+..|.+.|+.-|..+|+.||..+=+
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 345666665 456888899999888644 6677777888889999999999999999887644
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0077 Score=49.74 Aligned_cols=160 Identities=12% Similarity=0.001 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040580 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI-IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230 (412)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 230 (412)
|..++-+....|+.+-|...++++..+= |.+.-...+= --+-..|++++|.++++.+.+.. +.|..++-.=+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 3334444445555555555555555441 3221111111 11223455555555555555544 334444444444444
Q ss_pred hcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHccC---Chh
Q 040580 231 KERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD-LTTFNIRAVAFSRMS---MFW 306 (412)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g---~~~ 306 (412)
..|+--+|.+-+.+.-..... |..+|.-+-..|...|++++|.-.++++.-. .|- ..-|..+...+--.| +.+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 444444444444432222222 4467777777777777777777777776643 343 333334444333222 345
Q ss_pred HHHHHHHHHHh
Q 040580 307 DLHLSLEHMKH 317 (412)
Q Consensus 307 ~a~~~~~~m~~ 317 (412)
.+.++|.+..+
T Consensus 209 ~arkyy~~alk 219 (289)
T KOG3060|consen 209 LARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHH
Confidence 56666666555
No 149
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.92 E-value=0.00019 Score=57.73 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhcC-----CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccC----------------ChhHHHHHH
Q 040580 254 NLLWNLLLLSYAGN-----FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS----------------MFWDLHLSL 312 (412)
Q Consensus 254 ~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----------------~~~~a~~~~ 312 (412)
..+|..++..|.+. |.++=....++.|.+.|+.-|..+|+.||+.+=+.. +-+-|.+++
T Consensus 47 K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL 126 (228)
T PF06239_consen 47 KATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLL 126 (228)
T ss_pred HHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHH
Confidence 36666666666543 566666677888888888888889988888876522 235588999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcccc
Q 040580 313 EHMKHESVGPDLVTYGCVVDAYLDKRLG 340 (412)
Q Consensus 313 ~~m~~~g~~p~~~~~~~li~~~~~~~~~ 340 (412)
++|..+|+.||..|+..|++.+.+.+.+
T Consensus 127 ~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 127 EQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 9999999999999999999999876544
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.91 E-value=0.00028 Score=49.74 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=31.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 168 (412)
+...|++++|...++...+.. +.+...+..+...+...++++.|.+.|++..... +.++.++..+...+...|+++.|
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a 87 (100)
T cd00189 10 YYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEA 87 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHH
Confidence 333344444444444433322 1222333333344444444444444444333222 12222333333344444444444
Q ss_pred HHHHHH
Q 040580 169 ENTLKE 174 (412)
Q Consensus 169 ~~~~~~ 174 (412)
...+.+
T Consensus 88 ~~~~~~ 93 (100)
T cd00189 88 LEAYEK 93 (100)
T ss_pred HHHHHH
Confidence 444433
No 151
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.02 Score=52.47 Aligned_cols=328 Identities=9% Similarity=-0.038 Sum_probs=176.6
Q ss_pred cccccccccCCCChHHHHHHHHHhhc--c-ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 040580 16 RFNVPSHQTHPKNGDLARKIIRYRKQ--E-GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92 (412)
Q Consensus 16 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 92 (412)
|..-..+|++.|++++|.+=-.+-.+ | -...|+....++.-.|++++|+.-|.+-.+.. +-+...++-+..++...
T Consensus 39 ySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~ 117 (539)
T KOG0548|consen 39 YSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED 117 (539)
T ss_pred hcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH
Confidence 44455678899999998876655443 3 34579999999999999999999999987753 33455677777776211
Q ss_pred C---ChHHHHHHHHHHHhCC---CCcCHHHHHHHHHHHHcc----------CCHHHHHHHHHHH-----hhcC-------
Q 040580 93 G---FVLEAQVVWEELLSSS---FVLSVQVLSDLMDAYGRI----------GCFNEIISIIDQV-----SCRN------- 144 (412)
Q Consensus 93 ~---~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~----------~~~~~a~~~~~~m-----~~~~------- 144 (412)
. +.-.--.++..+...- .......|..++..+-+. .++..+.-.+... ...+
T Consensus 118 ~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~ 197 (539)
T KOG0548|consen 118 YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASM 197 (539)
T ss_pred HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCC
Confidence 0 0000001111111100 000111222222222111 0111111111000 0000
Q ss_pred CCC---------C-------------HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH
Q 040580 145 ADL---------L-------------PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202 (412)
Q Consensus 145 ~~~---------~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 202 (412)
..| . ..-.-.+.++..+..+++.+++-+....... -+..-++..-.++...|...+
T Consensus 198 ~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~ 275 (539)
T KOG0548|consen 198 AEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAE 275 (539)
T ss_pred CCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHH
Confidence 000 0 0123345555666667777777777666643 244445555566666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH-------HHHHHHhcccHHHHHHHHHHHhcCCCCcch---------------------
Q 040580 203 METAYGRLKRSRHLIDKEGIRA-------VSFTYLKERKFFMLGEFLRDVGLGRKDLGN--------------------- 254 (412)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------- 254 (412)
+...-+...+.|-. ...-|+. +-.+|.+.++++.+...+.+.-.....|+.
T Consensus 276 c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~ 354 (539)
T KOG0548|consen 276 CIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYIN 354 (539)
T ss_pred hhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 65555554444321 1112222 223455556666666666654333333221
Q ss_pred ----HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HhhHHH
Q 040580 255 ----LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPD-LVTYGC 329 (412)
Q Consensus 255 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ 329 (412)
.-.-.-...+.+.|++..|+..|.+++... +-|...|....-+|.+.|.+..|++=.+..++. .|+ ..-|..
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~R 431 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLR 431 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHH
Confidence 111112456778899999999999999774 445789999999999999999988776665553 333 222222
Q ss_pred HHHHHHhccccchHHHHHHhc
Q 040580 330 VVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m 350 (412)
=..++.-..+++.+.+.|.+-
T Consensus 432 Kg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 432 KGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 222333355677777777766
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.87 E-value=0.0034 Score=54.88 Aligned_cols=212 Identities=14% Similarity=0.143 Sum_probs=108.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040580 153 SRAISCFGKQGQLELMENTLKEMVSR----GFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF 227 (412)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 227 (412)
......|-..|++++|.+.|.+.... +-.. -...|......|.+. ++++|...++.. +.
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A---------------~~ 102 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA---------------IE 102 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------HH
Confidence 33344555666666666666654221 1110 112233333333333 566655555443 34
Q ss_pred HHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC-CChHHHHHHHHHHHH----cCCCCc--HhHHHHHHHHHH
Q 040580 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN-FKMKSLQREFMRMSE----AGFHPD--LTTFNIRAVAFS 300 (412)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~~~~p~--~~~~~~ll~~~~ 300 (412)
.|...|++..|-+. +..+...|-.. |++++|+..|++..+ .| .|. ...+..+...+.
T Consensus 103 ~y~~~G~~~~aA~~---------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 103 IYREAGRFSQAAKC---------------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHCT-HHHHHHH---------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 56666666666443 33445566666 788888888777653 22 222 234556777788
Q ss_pred ccCChhHHHHHHHHHHhCCC-----CCCHh-hHHHHHHHHHhccccchHHHHHHhc-cCCCC----CCcccHHHHHHHHh
Q 040580 301 RMSMFWDLHLSLEHMKHESV-----GPDLV-TYGCVVDAYLDKRLGRNLDFGLSKM-NLDDS----PVVSTDPYVFEAFG 369 (412)
Q Consensus 301 ~~g~~~~a~~~~~~m~~~g~-----~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~----p~~~~~~~li~~~~ 369 (412)
+.|++++|.++|++....-. +++.. .|-..+-++...|++..|.+.++.. ...+. ........||.++.
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 88888888888888765322 22222 2223333555678888888888887 32221 11223456677776
Q ss_pred cCCccc---HHHHHHHhccCchHHHHHHHH
Q 040580 370 KGDFHS---SSEAFLEFKRQRKWTYRKLIA 396 (412)
Q Consensus 370 ~~~~~~---a~~~~~~~~~~~~~~~~~l~~ 396 (412)
.++.+. ++.-|+.+.+-|..--..|+.
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~w~~~~l~~ 276 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDNWKTKMLLK 276 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---HHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcccCccHHHHHHHHHH
Confidence 655554 444455555555554444443
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.00049 Score=59.94 Aligned_cols=142 Identities=13% Similarity=0.119 Sum_probs=93.7
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 040580 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC-YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123 (412)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 123 (412)
.+|-.+++...+.+..+.|.++|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467777888888888888888888887543 2233444443333 33356677788888888775 46677788888888
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 040580 124 YGRIGCFNEIISIIDQVSCRNADLLP---EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 191 (412)
+.+.++.+.|..+|++.... +..+. ..|...+.-=.+.|+++.+..+.+++.+. .|+......++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 88888888888888888654 33333 37888888888888888888888877764 34433333333
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.00044 Score=48.74 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=76.9
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 125 (412)
++..+...+...|++++|.+.+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35566777788899999999999987753 3345677778888888999999999999988765 455578888889999
Q ss_pred ccCCHHHHHHHHHHHhh
Q 040580 126 RIGCFNEIISIIDQVSC 142 (412)
Q Consensus 126 ~~~~~~~a~~~~~~m~~ 142 (412)
..|+.+.|...+++..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 99999999999988754
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.0013 Score=48.95 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC--CCCHHhHHHHHHH
Q 040580 83 CALMLCYANNGFVLEAQVVWEELLSSSF--VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA--DLLPEVYSRAISC 158 (412)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~ 158 (412)
..+...+.+.|++++|...|+.+.+... +.....+..+..++.+.|+++.|.+.|+++....- +..+.++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444455555555555555544320 01123344455555555555555555555543221 1112344444455
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 040580 159 FGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~ 178 (412)
+.+.|++++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555544
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.75 E-value=0.011 Score=51.73 Aligned_cols=95 Identities=9% Similarity=0.010 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-----CcHh-HHHHHHHHHHccCChhHHHHHHHHHHhC--CCCCC--H
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH-----PDLT-TFNIRAVAFSRMSMFWDLHLSLEHMKHE--SVGPD--L 324 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~ 324 (412)
..+..+...+.+.|++++|..+|++....-.. ++.. .|-..+-.+...|++..|.+.+++.... ++..+ .
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 45556667788888888888888887653221 2222 2222333455567888888888887643 33333 3
Q ss_pred hhHHHHHHHHHhccccchHHHHHHhc
Q 040580 325 VTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
.....||.+| +.|+.+...+.+.+.
T Consensus 236 ~~~~~l~~A~-~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 236 KFLEDLLEAY-EEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHHHHHHHHH-HTT-CCCHHHHCHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 4555556655 456666666555555
No 157
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.75 E-value=0.03 Score=50.37 Aligned_cols=374 Identities=11% Similarity=0.053 Sum_probs=208.6
Q ss_pred cCCCChHHHHHHHHHhhcc---C------hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHH--HHhc
Q 040580 24 THPKNGDLARKIIRYRKQE---G------FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC--YANN 92 (412)
Q Consensus 24 ~~~~~~~~A~~~~~~~~~~---~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~ 92 (412)
-+.+++.+|.++|.++.+. + .+.-+.++++|-.. +.+.....+....+. .| ...|-.|..+ +.+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 4788999999999998764 2 23355777777654 356666666666553 23 2233333332 4578
Q ss_pred CChHHHHHHHHHHHhC--CCCc------------CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC----CCHHhHHH
Q 040580 93 GFVLEAQVVWEELLSS--SFVL------------SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD----LLPEVYSR 154 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~ 154 (412)
+++.+|.+.+..-... +-.| |-..=+..++++.+.|+++++..+++++..+=++ .+.++||-
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8999998887766553 2221 2233466778889999999999999988765444 67788988
Q ss_pred HHHHHHhcC---------------ChHHHHHHHHHHHHC------CCCCChHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 040580 155 AISCFGKQG---------------QLELMENTLKEMVSR------GFSVDSATGNAFIIYYSRF--GSLTEMETAYGRLK 211 (412)
Q Consensus 155 li~~~~~~g---------------~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~ 211 (412)
++-.+.++= -++.+.-..++|... .+.|....+..++....-. .+..--.+++....
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 665554431 133444444444332 3445555555555544432 23444455555555
Q ss_pred hCCCCCCHH-HHHHHHHHHHhcccHHHHHHHHHHHhcCCCCc----chHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 040580 212 RSRHLIDKE-GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL----GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286 (412)
Q Consensus 212 ~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 286 (412)
..-+.|+-. +...++..+.+ +.+++..+-+.+......+ =..+|..++...++.++..+|-+.+.-+.-. .
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--d 328 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--D 328 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--C
Confidence 555566533 33344444443 3444444333322111100 1256777778888888888887777665532 2
Q ss_pred CcH---------------------hHHH------------------------HHHH---HHHccCC-hhHHHHHHHHHHh
Q 040580 287 PDL---------------------TTFN------------------------IRAV---AFSRMSM-FWDLHLSLEHMKH 317 (412)
Q Consensus 287 p~~---------------------~~~~------------------------~ll~---~~~~~g~-~~~a~~~~~~m~~ 317 (412)
|+. ..++ .|+. -+-+.|. -++|.++++...+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 211 1111 0111 1222344 5667777777655
Q ss_pred CCCCC-CHhhHHHH----HHHHHh---ccccchHHHHHHhc-cCCCCCCccc----HHHHHHH---HhcCCcccHHHHHH
Q 040580 318 ESVGP-DLVTYGCV----VDAYLD---KRLGRNLDFGLSKM-NLDDSPVVST----DPYVFEA---FGKGDFHSSSEAFL 381 (412)
Q Consensus 318 ~g~~p-~~~~~~~l----i~~~~~---~~~~~~a~~~~~~m-~~~~~p~~~~----~~~li~~---~~~~~~~~a~~~~~ 381 (412)
. .| |..+-|.+ =.+|.. .+.+.+..++-+-+ ..|..|-... -|.|-++ |++|+++++.-.-.
T Consensus 409 f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 409 F--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred h--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2 22 33333322 223332 23344444444445 4466554333 3444444 46688887755444
Q ss_pred Hhcc--CchHHHHHHHHHHHHcCccccc
Q 040580 382 EFKR--QRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 382 ~~~~--~~~~~~~~l~~~~~~~g~~~~a 407 (412)
.+.. |++.+|..++-+....++|++|
T Consensus 487 WL~~iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 487 WLTKIAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHhhHHHH
Confidence 4333 6888888888888888888877
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.0017 Score=48.39 Aligned_cols=97 Identities=12% Similarity=-0.056 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCC--CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CcCHHHHHHHHH
Q 040580 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLL--PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSF--VLSVQVLSDLMD 122 (412)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~ 122 (412)
+..+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|...|+.+.+... +....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555555443110 0123344455555555555555555555544320 111334444555
Q ss_pred HHHccCCHHHHHHHHHHHhhc
Q 040580 123 AYGRIGCFNEIISIIDQVSCR 143 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~ 143 (412)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555444
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=0.00014 Score=50.47 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHhCCCC-cCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 040580 93 GFVLEAQVVWEELLSSSFV-LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENT 171 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 171 (412)
|+++.|+.+++.+.+.... |+...+..+..+|.+.|++++|.+++++ ...+ +.++...-.+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444555555554443211 1233333344555555555555555544 1111 11112222334444455555555544
Q ss_pred HH
Q 040580 172 LK 173 (412)
Q Consensus 172 ~~ 173 (412)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.034 Score=49.15 Aligned_cols=110 Identities=9% Similarity=0.001 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 040580 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300 (412)
Q Consensus 221 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 300 (412)
+.+..|.-+...|....|.++..+.+.+ +...|-..+.+++..+++++...+... +-+++.|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~----dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVP----DKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCc----HHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455555666666666666655433 336666777777777777666554321 112366777777777
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 301 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
+.|+..+|..+... +++ ..-+..|.+.|++.+|.+.-.+.
T Consensus 249 ~~~~~~eA~~yI~k-----~~~-----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IPD-----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHh-----CCh-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 77777776666554 211 33355566666666665554333
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.0019 Score=58.40 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=38.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 040580 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMEN 170 (412)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 170 (412)
..|++++|...|++.++.+ +.+...|..+..+|.+.|++++|+..+++..+.+ +.++..|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3444444444444444432 2334444444444444444444444444444332 2233344444444444444444444
Q ss_pred HHHHHHH
Q 040580 171 TLKEMVS 177 (412)
Q Consensus 171 ~~~~m~~ 177 (412)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444444
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.64 E-value=0.00013 Score=50.61 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=53.4
Q ss_pred CCChhHHHHHHHHHHhcCCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 040580 57 KKKPHLAHQLVNTVKSEGLL-PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135 (412)
Q Consensus 57 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 135 (412)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46778888888888775321 2344455577788888888888888877 3332 2233455556777888888888888
Q ss_pred HHHH
Q 040580 136 IIDQ 139 (412)
Q Consensus 136 ~~~~ 139 (412)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.003 Score=50.76 Aligned_cols=91 Identities=14% Similarity=-0.004 Sum_probs=60.6
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD--NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDL 120 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 120 (412)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 444566667777777888888888887776432222 3566777777778888888888887777653 3345566666
Q ss_pred HHHHHccCCHHHHH
Q 040580 121 MDAYGRIGCFNEII 134 (412)
Q Consensus 121 i~~~~~~~~~~~a~ 134 (412)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66776666654443
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.0021 Score=51.38 Aligned_cols=80 Identities=14% Similarity=-0.027 Sum_probs=43.1
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLP--DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++...+.. +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345555555566666666666666665432121 12355556666666666666666666665542 223344444444
Q ss_pred HHH
Q 040580 123 AYG 125 (412)
Q Consensus 123 ~~~ 125 (412)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.0019 Score=51.68 Aligned_cols=95 Identities=17% Similarity=0.086 Sum_probs=61.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVL--SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (412)
...|..+...+...|++++|...|+........| ...++..+...+...|++++|.+.+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666667777788888888888887653222 23577778888888888888888888776543 33344555555
Q ss_pred HHHH-------hcCChHHHHHHHHH
Q 040580 157 SCFG-------KQGQLELMENTLKE 174 (412)
Q Consensus 157 ~~~~-------~~g~~~~a~~~~~~ 174 (412)
..+. ..|+++.|+..+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 55666655444443
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.005 Score=49.45 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=65.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS--VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (412)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|.+.+++..... +-++..+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34567777788889999999999998887542222 4678888899999999999999999887654 33455677777
Q ss_pred HHHHhcCChHH
Q 040580 157 SCFGKQGQLEL 167 (412)
Q Consensus 157 ~~~~~~g~~~~ 167 (412)
..+...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 77777666433
No 167
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.031 Score=46.35 Aligned_cols=184 Identities=11% Similarity=0.003 Sum_probs=115.3
Q ss_pred CCChHHHHHHHHHhhcc--------Ch-hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH
Q 040580 26 PKNGDLARKIIRYRKQE--------GF-VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVL 96 (412)
Q Consensus 26 ~~~~~~A~~~~~~~~~~--------~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 96 (412)
..+.++..+++..+... +. ..|..++-+....|+.+.|..+++++..+- +-+...-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34566677776665431 22 234455555566777888888888877652 222222211122245567888
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMV 176 (412)
Q Consensus 97 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 176 (412)
+|.++|+.+++.+ +.|..++-.-+-..-..|+--+|++-+.+..+. +..|++.|.-+-..|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888776 566677766666666667766777777776654 46777888888888888888888888888887
Q ss_pred HCCCCCCh-HHHHHHHHHHH---hcCCHHHHHHHHHHHHhCC
Q 040580 177 SRGFSVDS-ATGNAFIIYYS---RFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 177 ~~g~~p~~-~~~~~li~~~~---~~g~~~~a~~~~~~~~~~~ 214 (412)
-. .|.. ..|..+...+- ...+.+.+...|....+..
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 63 4533 33334444333 2335666777777766543
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.55 E-value=0.0033 Score=54.83 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=85.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSS-FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (412)
.+|..+++..-+.+..+.|..+|.+..+.+ +...+.+..+++..+ ..++.+.|.++|+...+. .+.++..|..-+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457777777777777888888888887643 233444444444332 245666688888877655 45666777777788
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040580 159 FGKQGQLELMENTLKEMVSRGFSVD---SATGNAFIIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
+.+.|+.+.|..+|++.... +.++ ...|...+.-=.+.|+++.+..+.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887765 2222 246777777777778888777777776653
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.50 E-value=0.0035 Score=48.25 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 040580 82 LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161 (412)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 161 (412)
.-.+...+...|++++|..+|+.+...+ +-+..-|-.|.-++-..|++.+|+..|......+ +-+|..+-.+-.++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3334444556677777777776666654 3455556666666666677777777776665554 3455566666666667
Q ss_pred cCChHHHHHHHHHHHHC
Q 040580 162 QGQLELMENTLKEMVSR 178 (412)
Q Consensus 162 ~g~~~~a~~~~~~m~~~ 178 (412)
.|+.+.|.+.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777766655443
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.50 E-value=0.0032 Score=48.47 Aligned_cols=95 Identities=9% Similarity=-0.021 Sum_probs=54.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 195 (412)
..-.+...+...|++++|.++|+-+...+ +-++.-|-.|-.++-..|++++|++.|.......+ -|...+-.+-.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 33444445556666666666666665444 33444555555666666666666666666655432 14455555666666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 040580 196 RFGSLTEMETAYGRLKR 212 (412)
Q Consensus 196 ~~g~~~~a~~~~~~~~~ 212 (412)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665544
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.48 E-value=0.0045 Score=56.02 Aligned_cols=91 Identities=8% Similarity=-0.062 Sum_probs=73.2
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHH
Q 040580 52 EDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131 (412)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 131 (412)
..+...|++++|++.|++..+.. +-+...|..+..++.+.|++++|...++.+++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 44556788999999998888764 3356777888888888999999999998888865 556778888888888999999
Q ss_pred HHHHHHHHHhhcC
Q 040580 132 EIISIIDQVSCRN 144 (412)
Q Consensus 132 ~a~~~~~~m~~~~ 144 (412)
+|...|++..+.+
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999998887654
No 172
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.013 Score=48.65 Aligned_cols=142 Identities=11% Similarity=0.070 Sum_probs=97.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVS---- 226 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li---- 226 (412)
+.+.++..+...|.+.-.++.+++..+...+-+......|.+.-.+.||.+.|...|+...+..-+.|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566777777888888889999999887666678888888999999999999999999887654444444444443
Q ss_pred -HHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 040580 227 -FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295 (412)
Q Consensus 227 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 295 (412)
..|.-++++..|...+.++....+. |...-|.-.-+..-.|+..+|++..+.|.+. .|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 3344567777777777665433322 2355554444444567888888888888765 4555554433
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.28 E-value=0.092 Score=44.67 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=43.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 040580 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY---SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194 (412)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 194 (412)
.....+.+.|++++|.+.|+++.... +-++..- -.+..++.+.+++++|...+++..+....-...-+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 34445566778888888888776643 2223322 345566677788888888888777753322223344444443
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.27 E-value=0.093 Score=44.64 Aligned_cols=198 Identities=11% Similarity=-0.011 Sum_probs=112.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 040580 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATG---NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224 (412)
Q Consensus 148 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (412)
++..+-.....+...|++++|.+.|+++...-..+ ...- -.+..++.+.++++.|...+++..+........-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34434344555677899999999999998863332 2222 2456778899999999999999987653333334444
Q ss_pred HHHHHHhcccHHHHHHHHHHHhcCCCCcc-----hHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 040580 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLG-----NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299 (412)
Q Consensus 225 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 299 (412)
.+.+.+....-.....-+..+.....++. ...+..++.-|-...-..+|..-+..++.. .-...+ .+..-|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y 185 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYY 185 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHH
Confidence 44443310000000000000000000000 023445555555555555565544444421 111112 455568
Q ss_pred HccCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 300 SRMSMFWDLHLSLEHMKHE--SVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 300 ~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
.+.|.+.-|..-++.+++. +.+........++.+|.+.|..+++.++...+
T Consensus 186 ~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 186 TKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8888888888888888763 44445667777888888888888888876655
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.27 E-value=0.027 Score=41.72 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 89 YANNGFVLEAQVVWEELLSSSFVLS--VQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
+-..|+.++|..+|++....|+... ...+-.+...+...|++++|..+|++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555443332 2234444445555555555555555544
No 176
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.27 E-value=0.22 Score=48.84 Aligned_cols=224 Identities=16% Similarity=0.006 Sum_probs=152.6
Q ss_pred cCCCChHHHHHHHHHhhcc-ChhhHHHHHHHH--hcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 040580 24 THPKNGDLARKIIRYRKQE-GFVDCASLVEDL--GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100 (412)
Q Consensus 24 ~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 100 (412)
..++++..|.+-.+.+.++ ....|..++.++ .+.|+.++|..+++.....+.. |..|...+-..|...++.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3577889998888887654 333456666655 5789999999999988776644 88999999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC-C---------hHHHHH
Q 040580 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG-Q---------LELMEN 170 (412)
Q Consensus 101 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~---------~~~a~~ 170 (412)
+|++..+. -|+......+..+|.+.+++.+-.++-=++-+ +.+-++..+=++++.....- . ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99999876 47788888888999999888765444333332 34445555545555444321 1 234455
Q ss_pred HHHHHHHCC-CCCChHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Q 040580 171 TLKEMVSRG-FSVDSATGNAFIIYYSRFGSLTEMETAY-GRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG 248 (412)
Q Consensus 171 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 248 (412)
.++.+.+.+ -.-+..-...-...+...|++++|.+++ ....+.-...+...-+.-+..+...+++.+..++-.++-..
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 556665543 1112223333445566788899999998 44444444445556666778888888888888777776555
Q ss_pred CCC
Q 040580 249 RKD 251 (412)
Q Consensus 249 ~~~ 251 (412)
+.+
T Consensus 256 ~~D 258 (932)
T KOG2053|consen 256 GND 258 (932)
T ss_pred CCc
Confidence 543
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.26 E-value=0.0013 Score=43.42 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=23.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 040580 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
+.|++++|.++|+.+.+.. +-+..++..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555544432 22444444455555555555555555554443
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.24 E-value=0.0022 Score=41.82 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=23.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
+.+.|++++|...|+.+++.. +-+...+..+..++.+.|++++|...|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444443 2234444444444444444444444444443
No 179
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.02 Score=47.66 Aligned_cols=167 Identities=11% Similarity=0.017 Sum_probs=98.1
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCH
Q 040580 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130 (412)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 130 (412)
+..+......+..+.+|++=. ....+.+++.+.-.|.+.-....+..+++...+.+......|++.-.+.||.
T Consensus 156 i~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~ 228 (366)
T KOG2796|consen 156 LANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI 228 (366)
T ss_pred HHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence 333333333455566665432 2345556666666777777777777777766566677777777777777888
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHH-----HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 040580 131 NEIISIIDQVSCRNADLLPEVYSRAI-----SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205 (412)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 205 (412)
+.|...|++..+..-..+..+.+.++ ..|.-++++..|...+.+.....-. |....|.=.-+..-.|+..+|.+
T Consensus 229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHH
Confidence 88877777666554444444444332 3345566777777777766654322 33333322222333577777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH
Q 040580 206 AYGRLKRSRHLIDKEGIRAVSF 227 (412)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~li~ 227 (412)
..+.|... .|.+.+-++++-
T Consensus 308 ~~e~~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 308 QLEAMVQQ--DPRHYLHESVLF 327 (366)
T ss_pred HHHHHhcc--CCccchhhhHHH
Confidence 77777765 344444444433
No 180
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.17 E-value=0.18 Score=50.13 Aligned_cols=159 Identities=9% Similarity=-0.003 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHH--HHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR--AISC 158 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~ 158 (412)
.|..|...|....+...|...|+...+.+ ..+...+..+.+.|++..+++.|..+.-...+.. +...-.+|. .--.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhcccc
Confidence 45555555555555555555555555544 3445555556666666666666655522221111 001112222 2222
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcccHHH
Q 040580 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK-EGIRAVSFTYLKERKFFM 237 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~ 237 (412)
|...++...+..-|+...+..++ |...|..+..+|.+.|++..|.++|...... +|+. ..---.....+..|++.+
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHH
Confidence 34455555555555555443221 4455666666666666666666666554432 2221 111112223344555555
Q ss_pred HHHHHHH
Q 040580 238 LGEFLRD 244 (412)
Q Consensus 238 a~~~~~~ 244 (412)
+...+..
T Consensus 649 ald~l~~ 655 (1238)
T KOG1127|consen 649 ALDALGL 655 (1238)
T ss_pred HHHHHHH
Confidence 5555544
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.16 E-value=0.072 Score=50.65 Aligned_cols=138 Identities=14% Similarity=0.068 Sum_probs=79.8
Q ss_pred CCCCCHHhHHHHHHHHHhc--C---ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC--------CHHHHHHHHHHH
Q 040580 74 GLLPDNSTLCALMLCYANN--G---FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--------CFNEIISIIDQV 140 (412)
Q Consensus 74 g~~p~~~~~~~ll~~~~~~--~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m 140 (412)
+.+.+...|...+++.... + +...|..+|++.++.. +-+...|..+..++.... +...+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3455667777777764432 2 2567777787777764 333445554433332211 122333333332
Q ss_pred hhc-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040580 141 SCR-NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 141 ~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 214 (412)
... ....++..|..+.......|++++|...+++....+ |+...|..+...+...|+.++|...+++.....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 221 123445566666555556677777777777777753 566677777777777777777777777766543
No 182
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.13 E-value=0.31 Score=47.86 Aligned_cols=196 Identities=13% Similarity=0.028 Sum_probs=121.8
Q ss_pred cccccccc--cCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 040580 16 RFNVPSHQ--THPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90 (412)
Q Consensus 16 ~~~l~~~~--~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 90 (412)
+..++.++ .+.|+.++|..+++....+ |..|...+-..|...++.++|..+|++..+. -|+.+-...+..+|+
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayv 121 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHH
Confidence 44555554 4789999999888876543 8889999999999999999999999999875 678887888888999
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC----------CHHHHHHHHHHHhhcCCCCCHH-hHHHHHHHH
Q 040580 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG----------CFNEIISIIDQVSCRNADLLPE-VYSRAISCF 159 (412)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~ 159 (412)
+.+++.+-.++--++-+. ++-+...|=++++.....- -..-|.+.++.+.+.+-+.... -...-...+
T Consensus 122 R~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 988876654444444332 2344444444444443321 1234556666665544111111 111223334
Q ss_pred HhcCChHHHHHHHHH-HHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040580 160 GKQGQLELMENTLKE-MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 214 (412)
...|.+++|.+++.. .-+.-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 566778888888743 3332222233444455556666667776666666666655
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.10 E-value=0.0021 Score=42.42 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040580 57 KKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS 108 (412)
Q Consensus 57 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (412)
.|++++|+++|+++.... +-+...+..+..+|.+.|++++|..+++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555544432 113444444445555555555555555544443
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.08 E-value=0.19 Score=44.53 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 335 (412)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++...+-.. + -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHH
Confidence 44444556666777777766655543 57777777777777777777766654332 1 13456677777777
Q ss_pred hccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHHHHHHH
Q 040580 336 DKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLE 382 (412)
Q Consensus 336 ~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~ 382 (412)
+.|...+|..+...+. +.--+..|.+ |++.+|.+...+
T Consensus 249 ~~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777776641 2334555666 777776655443
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.06 E-value=0.047 Score=40.47 Aligned_cols=105 Identities=21% Similarity=0.118 Sum_probs=75.9
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC----HHHHHHHHHH
Q 040580 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPD--NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS----VQVLSDLMDA 123 (412)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~ 123 (412)
...++-..|+.++|+.+|++....|+... ...+-.+.+.+...|++++|..+++...... |+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 45567778999999999999999887655 3456677888999999999999999988752 32 2333334457
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 040580 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (412)
+...|+.++|.+.+-....... ..|.--|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~----~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETL----PRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 7788999999988876653322 25555555543
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.03 E-value=0.0041 Score=41.12 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC-CHHHHHHHHHHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-CFNEIISIIDQV 140 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m 140 (412)
.+|..+...+...|++++|+..|++.++.+ +.+...|..+..++.+.| ++++|.+.+++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 334444444444444444444444444432 223344444444444444 344444444443
No 187
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.34 Score=46.60 Aligned_cols=124 Identities=11% Similarity=-0.044 Sum_probs=76.9
Q ss_pred cccccccCCCChHHHHHHHHHhhccC---hhhHHHHHHHHhcCCCh--hHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 040580 18 NVPSHQTHPKNGDLARKIIRYRKQEG---FVDCASLVEDLGRKKKP--HLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92 (412)
Q Consensus 18 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 92 (412)
.+++-+...+.+..|+++-+.+..|- ...|.....-+.+..+. +++.+.+++=.+... ....+|..+.+.....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 45666777888999999988887764 45566666666665332 333444433333222 3456677777777889
Q ss_pred CChHHHHHHHHHHHhCCC----CcCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 040580 93 GFVLEAQVVWEELLSSSF----VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
|+.+.|..+.+.=...+. -.+..-+...+.-+.+.|+.+....++-.+..
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 999999887765333221 01223355566667777777777766665543
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.01 E-value=0.0037 Score=40.72 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=38.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
+...+.+.|++++|.+.|++..+.. +-++..+..+..++...|++++|...|++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666777777777777776654 345557777777777777777777777776553
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.99 E-value=0.25 Score=44.36 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=48.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcC---CCCCHHhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 040580 117 LSDLMDAYGRIGCFNEIISIIDQVSCRN---ADLLPEVYSRAISCFGK---QGQLELMENTLKEMVSRGFSVDSATGNAF 190 (412)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 190 (412)
...++-+|-...+++...++++.+.... +.-++.+--....++.+ .|+.++|++++..+....-.++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345556777778888888888776431 11122222234455556 77888888888776555555667777766
Q ss_pred HHHHH
Q 040580 191 IIYYS 195 (412)
Q Consensus 191 i~~~~ 195 (412)
...|-
T Consensus 224 GRIyK 228 (374)
T PF13281_consen 224 GRIYK 228 (374)
T ss_pred HHHHH
Confidence 65553
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.99 E-value=0.0055 Score=40.47 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 040580 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG-QLELMENTLKEMVS 177 (412)
Q Consensus 113 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 177 (412)
+..+|..+...+.+.|++++|+..|++..+.+ +-++..|..+-.++...| ++++|+..+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 35566777777777777777777777776654 344557777777777777 57777777766554
No 191
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.99 E-value=0.0062 Score=47.37 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=37.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChHH
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS-----RGFSVDSAT 186 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 186 (412)
+...++..+...|+++.|.++.+.+...+ +.+...|..+|.++...|+...|.++|+++.+ -|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555556666666666666666554 44555666666666666666666666665532 366665544
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.95 E-value=0.12 Score=49.08 Aligned_cols=71 Identities=11% Similarity=-0.098 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHH
Q 040580 218 DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292 (412)
Q Consensus 218 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 292 (412)
++..|..+.-.....|++++|...+++.....+ +...|..+...+...|+.++|...+++.... .|...||
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 345555554444455666666666665444443 3366666677777777777777777666543 4444444
No 193
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.95 E-value=0.0063 Score=51.01 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=66.1
Q ss_pred HHHHHHHHhh--ccChhhHHHHHHHHhcC-----CChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC---------
Q 040580 31 LARKIIRYRK--QEGFVDCASLVEDLGRK-----KKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF--------- 94 (412)
Q Consensus 31 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--------- 94 (412)
..+..|.... ++|..+|-+.+..+... +.++=....++.|.+.|+..|..+|+.||..+=+-.-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 56888888888877543 5566677778899999999999999999987654321
Q ss_pred -------hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 040580 95 -------VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129 (412)
Q Consensus 95 -------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 129 (412)
-+-+..++++|...|+.||..+-..|++++.+.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 12344555555555555555555555555555543
No 194
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.94 E-value=0.0044 Score=46.37 Aligned_cols=99 Identities=5% Similarity=-0.040 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 040580 218 DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAV 297 (412)
Q Consensus 218 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 297 (412)
|..++..++.++++.|+++....+++..-.-.. .+-...+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-----------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-----------NGKKKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-----------CCccccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666667777777777666666654311110 00000000 0112345677777777777
Q ss_pred HHHccCChhHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHh
Q 040580 298 AFSRMSMFWDLHLSLEHMKH-ESVGPDLVTYGCVVDAYLD 336 (412)
Q Consensus 298 ~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~ 336 (412)
+|+..|++..|.++++...+ .+++.+..+|..|++-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777778788777777654 5677677777777765543
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.93 E-value=0.14 Score=40.49 Aligned_cols=151 Identities=11% Similarity=-0.005 Sum_probs=102.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCh
Q 040580 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQL 165 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 165 (412)
..+..+.-+++...+-..+- ....|++.---.|..+..+.|+..+|...|++....-.--|+...-.+.++....+++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~--~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 63 LMALQQKLDPERHLREATEE--LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHhcChhHHHHHHHHH--HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 33444444554443322222 2246777777888888899999999999999887655556666777788888888999
Q ss_pred HHHHHHHHHHHHCC---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHH
Q 040580 166 ELMENTLKEMVSRG---FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL 242 (412)
Q Consensus 166 ~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 242 (412)
..|...++.+.+.. -.|| +.-.+.+.+...|+..+|+..|+.....- |+...-......+.+.|+.+++..-+
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 99999888887753 2333 34456778888899988999998888653 55554444555566666666554433
No 196
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.83 E-value=0.028 Score=42.06 Aligned_cols=48 Identities=17% Similarity=-0.011 Sum_probs=21.7
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 040580 180 FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS-RHLIDKEGIRAVSF 227 (412)
Q Consensus 180 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 227 (412)
..|+..+..+++.+|+..|++..|.++.+...+. +++.+..+|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3444444444444444444444444444444332 33444444444444
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.82 E-value=0.17 Score=39.99 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=112.7
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCH
Q 040580 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130 (412)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 130 (412)
..+..+.=++++...-..+-. ...|+..---.|..++.+.|+..+|...|++...--+.-|....-.+.++....+++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 63 LMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 333444444544443333222 246777777889999999999999999999998755677888999999999999999
Q ss_pred HHHHHHHHHHhhcCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040580 131 NEIISIIDQVSCRNA-DLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGR 209 (412)
Q Consensus 131 ~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 209 (412)
..|...++++-+.+. ..+|++.-.+...+...|.+..|..-|+..... -|+...-...-..+.+.|+.+++..-+..
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 999999998876541 234556777788999999999999999999885 44444333344456677776665544433
Q ss_pred H
Q 040580 210 L 210 (412)
Q Consensus 210 ~ 210 (412)
+
T Consensus 219 v 219 (251)
T COG4700 219 V 219 (251)
T ss_pred H
Confidence 3
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.80 E-value=0.016 Score=45.02 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHh-----hcCCCCCHHh
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS-----CRNADLLPEV 151 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~ 151 (412)
....++..+...|+++.|..+.+.+.... |.|...|..+|.+|...|+...|.++|+++. +-|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445566777899999999999998876 6688899999999999999999999998774 3477787764
No 199
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.78 E-value=0.12 Score=44.07 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 62 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
+...+-++++..| .-+.+.+++++|+..|.+.++.. +-|.+-|..-..+|++.|.++.|.+-.+...
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al 142 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL 142 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3555556666554 23567778888888888887764 5566777777777888888887777666654
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 040580 142 CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194 (412)
Q Consensus 142 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 194 (412)
..+ +-...+|..|-.+|...|++++|++.|++..+ +.|+-.+|-.=+...
T Consensus 143 ~iD-p~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 143 SID-PHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred hcC-hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 322 11112777777888888888888887777666 566666666555444
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.12 Score=44.18 Aligned_cols=101 Identities=12% Similarity=-0.000 Sum_probs=77.2
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC-ChHH
Q 040580 111 VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG---QLELMENTLKEMVSRGFSV-DSAT 186 (412)
Q Consensus 111 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p-~~~~ 186 (412)
+-|...|-.|...|...|+.+.|...|.+..+.. +.+++.+..+..++..+. ...++.++|+++.+. .| +..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 6678888888899999999999888888887664 677777776666655432 456788888888875 34 5566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040580 187 GNAFIIYYSRFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 187 ~~~li~~~~~~g~~~~a~~~~~~~~~~~ 214 (412)
...|-..+...|++.+|...|+.|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6667778888888999988888888765
No 201
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.75 E-value=0.022 Score=47.95 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHhcC-----CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCC----------------hhHHHHH
Q 040580 253 GNLLWNLLLLSYAGN-----FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM----------------FWDLHLS 311 (412)
Q Consensus 253 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------------~~~a~~~ 311 (412)
|..+|-..+..+... +.++=....++.|.+.|+.-|..+|+.||+.+-+..- -+=+..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 446666666666543 4566666678889999999999999999988766432 1237789
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcccc
Q 040580 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLG 340 (412)
Q Consensus 312 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 340 (412)
+++|...|+.||..+-..|++++.+.+-.
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 99999999999999999999999887654
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.71 E-value=0.61 Score=44.67 Aligned_cols=211 Identities=13% Similarity=-0.018 Sum_probs=110.2
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHh-cCCCCC--------HHhHHHHHHHHHhcCChHHHHH
Q 040580 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKS-EGLLPD--------NSTLCALMLCYANNGFVLEAQV 100 (412)
Q Consensus 30 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~--------~~~~~~ll~~~~~~~~~~~a~~ 100 (412)
++|.+..+. .|.+..|..+.......-.++.|...|-+... .|++.- ...-.+=+. +--|++++|++
T Consensus 680 edA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek 755 (1189)
T KOG2041|consen 680 EDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEK 755 (1189)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhh
Confidence 344444333 24455677777666666667777777655443 122210 001111111 22478888888
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL----PEVYSRAISCFGKQGQLELMENTLKEMV 176 (412)
Q Consensus 101 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 176 (412)
+|-+|-+++ ..|..+.+.|++-.+.++++. .|-..+ .+.|+.+-..+.....|++|.+.+..-.
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 887776543 245666677777666555542 111111 1277777777777777777777765432
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHH
Q 040580 177 SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256 (412)
Q Consensus 177 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 256 (412)
. -...+.++.+..++++.+.+-+.+. -+....-.+.+++.+.|..++|.+.+-+...+.
T Consensus 824 ~---------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk------- 882 (1189)
T KOG2041|consen 824 D---------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK------- 882 (1189)
T ss_pred c---------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccCcH-------
Confidence 1 1123444444444444444433332 234445556666666666666666555432222
Q ss_pred HHHHHHHHhcCCChHHHHHHHHH
Q 040580 257 WNLLLLSYAGNFKMKSLQREFMR 279 (412)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~ 279 (412)
..+..|...+++.+|.++-++
T Consensus 883 --aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 883 --AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHh
Confidence 223445555566666555444
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.66 E-value=0.49 Score=42.96 Aligned_cols=362 Identities=9% Similarity=-0.054 Sum_probs=189.7
Q ss_pred cCCCChHHHHHHHHHhhcc------------------ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcC----CCCCHHh
Q 040580 24 THPKNGDLARKIIRYRKQE------------------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEG----LLPDNST 81 (412)
Q Consensus 24 ~~~~~~~~A~~~~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~ 81 (412)
-+.+.+.+|...+..-... |..-=+..++++...|.+.++..+++++...= ..-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3677888887776542211 22334566788899999999999999987643 3478999
Q ss_pred HHHHHHHHHhcC--------ChHHHHHHHH-------HHHhC------CCCcCHHHHHHHHHHHHccC--CHHHHHHHHH
Q 040580 82 LCALMLCYANNG--------FVLEAQVVWE-------ELLSS------SFVLSVQVLSDLMDAYGRIG--CFNEIISIID 138 (412)
Q Consensus 82 ~~~ll~~~~~~~--------~~~~a~~~~~-------~m~~~------~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~ 138 (412)
|+.++-.++++= ..+-.-..|+ +|... .+-|.......++....-.. +..--.++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 998776665541 1111222222 22211 23344444444544443221 1112222233
Q ss_pred HHhhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040580 139 QVSCRNADLLPE-VYSRAISCFGKQGQLELMENTLKEMVSRGFSV----DSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 139 ~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
.-...-+.|+-+ +...++..+.. +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+.-+.-.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 223333444443 34444444444 4555544444433322211 2467888999999999999999998877643
Q ss_pred CCCCCHHHHHH-------HHHHHH-hc---ccHHHHHHHHHHHhcCCCCcchHHHHHH---HHHHhcCCC-hHHHHHHHH
Q 040580 214 RHLIDKEGIRA-------VSFTYL-KE---RKFFMLGEFLRDVGLGRKDLGNLLWNLL---LLSYAGNFK-MKSLQREFM 278 (412)
Q Consensus 214 ~~~~~~~~~~~-------li~~~~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~-~~~a~~~~~ 278 (412)
. |+...-.. +.+..+ .- -+..+=..+++.......+- -..-..| ..-+-+.|. -++|+.+++
T Consensus 328 d--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 328 D--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred C--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 2 33222111 122222 10 11222233444333322221 1122222 244556666 888999999
Q ss_pred HHHHcCCCCcH-hH----HHHHHHHHHcc---CChhHHHHHHHHHHhCCCCCCH----hhHHHHHHH--HHhccccchHH
Q 040580 279 RMSEAGFHPDL-TT----FNIRAVAFSRM---SMFWDLHLSLEHMKHESVGPDL----VTYGCVVDA--YLDKRLGRNLD 344 (412)
Q Consensus 279 ~m~~~~~~p~~-~~----~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~--~~~~~~~~~a~ 344 (412)
...+- .|.. .. +..+=.+|... ..+.+-..+-+-..+.|+.|-. ..-|.|-+| +...|++.++.
T Consensus 405 ~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 405 LILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 88854 3332 22 22222333332 2233334444444567888743 333444333 23467776554
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHh-cCCcccHHHHHHHhccCchHHHHHH
Q 040580 345 FGLSKMNLDDSPVVSTDPYVFEAFG-KGDFHSSSEAFLEFKRQRKWTYRKL 394 (412)
Q Consensus 345 ~~~~~m~~~~~p~~~~~~~li~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l 394 (412)
-.-.- -..+.|++.+|..+--++. ..++.+|.+.+.++.+ |...|++=
T Consensus 483 ~ys~W-L~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-n~~~~dsk 531 (549)
T PF07079_consen 483 LYSSW-LTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP-NERMRDSK 531 (549)
T ss_pred HHHHH-HHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-chhhHHHH
Confidence 33222 3456788888877655443 4999999999988877 55555543
No 204
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.64 E-value=0.037 Score=47.08 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMV 176 (412)
Q Consensus 97 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 176 (412)
+....-+.++..| .-..+.+++.+|+..|.+..+-. +-+++-|..-..+|.+.|.++.|++=-+...
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al 142 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL 142 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4555566666655 33557799999999999997754 5667778888999999999999988777776
Q ss_pred HCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040580 177 SRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230 (412)
Q Consensus 177 ~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 230 (412)
.- .| -..+|..|-.+|...|++++|.+.|+...+ +.|+..+|-.=+..--
T Consensus 143 ~i--Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 143 SI--DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIAE 193 (304)
T ss_pred hc--ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHHH
Confidence 63 44 346899999999999999999999888775 4677777766655544
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.64 E-value=0.3 Score=40.29 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=31.2
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 121 MDAYGRIGCFNEIISIIDQVSCRNA--DLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
...+...|++++|.+.|+++..... +.-+...-.++.++.+.|+++.|...+++..+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444556666666666666655421 111224445566666666666666666666554
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.63 E-value=0.055 Score=46.48 Aligned_cols=97 Identities=7% Similarity=0.002 Sum_probs=44.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCC--CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-ChHHHHHHHH
Q 040580 117 LSDLMDAYGRIGCFNEIISIIDQVSCRNAD--LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS-V-DSATGNAFII 192 (412)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~ 192 (412)
|...+..+.+.|++++|...|+.+....-. ..+.++-.+...|...|++++|...|+.+.+.-.. | ....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444343334445555555555555443211 01234455555555555555555555555543110 0 1122223334
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 040580 193 YYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 193 ~~~~~g~~~~a~~~~~~~~~~ 213 (412)
.+...|+.+.|..+|+.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555543
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.62 E-value=0.042 Score=47.18 Aligned_cols=98 Identities=8% Similarity=0.018 Sum_probs=66.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhcC--CCCCHHhH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS----VQVLSDLMDAYGRIGCFNEIISIIDQVSCRN--ADLLPEVY 152 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~ 152 (412)
...|...+....+.|++++|...|+.+++.. |+ ...+-.+..+|...|++++|...|+.+.... -+..++.+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 3445555555566678888888888877753 32 2466677788888888888888888886532 12234455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 153 SRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
-.+...+...|+.++|..+|++..+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666777788888888888887775
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.25 Score=42.32 Aligned_cols=113 Identities=12% Similarity=0.007 Sum_probs=86.5
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC---CHHHHHHHHHHHhhcCCCCCHHhH
Q 040580 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG---CFNEIISIIDQVSCRNADLLPEVY 152 (412)
Q Consensus 76 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~ 152 (412)
+-|...|-.|...|...|+...|..-|....+.. ++|...+..+..++.... +-.++.++|+++...+ +-++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4478889999999999999999999999998864 567777777776665443 3467889999998766 5566677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 040580 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192 (412)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 192 (412)
..|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 888888999999999999999998863 33334444443
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.42 E-value=0.63 Score=41.43 Aligned_cols=295 Identities=12% Similarity=0.053 Sum_probs=178.4
Q ss_pred HHHHHHHHh--cCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCcCHHH--HHHH
Q 040580 47 CASLVEDLG--RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY--ANNGFVLEAQVVWEELLSSSFVLSVQV--LSDL 120 (412)
Q Consensus 47 ~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l 120 (412)
|.+|=.++. -.|+-..|.++-.+-.+. +.-|......|+.+- .-.|+.+.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444443 346666666665544321 334555555555443 3469999999999999863 33322 2333
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChH--HHHHHHHHHHh-
Q 040580 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG-FSVDSA--TGNAFIIYYSR- 196 (412)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~--~~~~li~~~~~- 196 (412)
.-.--+.|+.+.|.+.-++.-..- +.-+..+...+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 334456788888888877775443 3345588899999999999999999998776543 344442 22334433222
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHH
Q 040580 197 --FGSLTEMETAYGRLKRSRHLIDKEGI-RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSL 273 (412)
Q Consensus 197 --~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 273 (412)
..+...|...-.+.. .+.||...- -.-..++.+.|++.++-.+++.+-...+.| .++ ..|.....-+.+
T Consensus 240 ~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia----~lY~~ar~gdta 311 (531)
T COG3898 240 LLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIA----LLYVRARSGDTA 311 (531)
T ss_pred HhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHH----HHHHHhcCCCcH
Confidence 124445555444433 345554332 233567888999999999999887777766 222 233333333344
Q ss_pred HHHHHHHHH-cCCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-ccccchHHHHHHhc
Q 040580 274 QREFMRMSE-AGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD-KRLGRNLDFGLSKM 350 (412)
Q Consensus 274 ~~~~~~m~~-~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m 350 (412)
+.-+++... ..++|| ..+--.+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-+++...+.+-
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 444444442 235666 4555667777788888877665444332 357888888777665544 48888888888776
Q ss_pred -cCCCCC
Q 040580 351 -NLDDSP 356 (412)
Q Consensus 351 -~~~~~p 356 (412)
+..-.|
T Consensus 390 v~APrdP 396 (531)
T COG3898 390 VKAPRDP 396 (531)
T ss_pred hcCCCCC
Confidence 443334
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.39 E-value=0.17 Score=47.75 Aligned_cols=115 Identities=15% Similarity=0.048 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHH-HHHHHHccCCHHHHHHHHHHHhhcC--C-CCCHHhHHHHHHHHHhcCChHHHH
Q 040580 94 FVLEAQVVWEELLSSSFVLSVQVLSD-LMDAYGRIGCFNEIISIIDQVSCRN--A-DLLPEVYSRAISCFGKQGQLELME 169 (412)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~ 169 (412)
+.+.|.++++.+.+. -|+...|.. -.+.+...|++++|.+.|++..... . +.....+--+.-.+.-.++|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 445555555555553 344333322 2233444556666666665433211 0 011113333444555666777777
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHH-HHhcCCH-------HHHHHHHHHHH
Q 040580 170 NTLKEMVSRGFSVDSATGNAFIIY-YSRFGSL-------TEMETAYGRLK 211 (412)
Q Consensus 170 ~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~-------~~a~~~~~~~~ 211 (412)
+.|..+.+..- -+..+|.-+..+ +...|+. ++|..+|.++.
T Consensus 326 ~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 77776665421 133333333322 2334555 66666666654
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.36 E-value=0.031 Score=37.29 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=22.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
+.+.+++++|.++++.+.+.+ |.+...+.....++.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444444444444432 2233344444444444444444444444443
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.26 E-value=0.04 Score=36.72 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=24.4
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
.|.+.++++.|.++++.+...+ +.++..|......+.+.|++++|...|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444444444444444332 22333444444444444444444444444444
No 213
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.24 E-value=0.22 Score=43.67 Aligned_cols=130 Identities=7% Similarity=0.044 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh--cC----ChHHHHHHHHHHHhCCC---CcCHHHHHHHHHHHHccCCH
Q 040580 60 PHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN--NG----FVLEAQVVWEELLSSSF---VLSVQVLSDLMDAYGRIGCF 130 (412)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~ 130 (412)
+++.+++++.|.+.|.+-+..+|-+..-.... .. ...++..+|+.|++... .++..++..|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45556788888888888787777654333333 22 34567888888887542 3445556666544 33333
Q ss_pred ----HHHHHHHHHHhhcCCCCCHH--hHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCChHHHHHHH
Q 040580 131 ----NEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQ--LELMENTLKEMVSRGFSVDSATGNAFI 191 (412)
Q Consensus 131 ----~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li 191 (412)
+.++.+|+.+.+.|+..+-. ..+.++..+....+ ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 45677777777767655544 22233322222222 447778888888888887776665443
No 214
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.23 E-value=0.067 Score=47.59 Aligned_cols=263 Identities=11% Similarity=-0.034 Sum_probs=153.2
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHH--Hh--CCC-CcCHHHHHHHHHH
Q 040580 53 DLGRKKKPHLAHQLVNTVKSEGLLPDN----STLCALMLCYANNGFVLEAQVVWEEL--LS--SSF-VLSVQVLSDLMDA 123 (412)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m--~~--~~~-~~~~~~~~~li~~ 123 (412)
-+++.|+......+|+...+.|.. |. ..|..|.++|.-.+++++|+++...= +. .|- .-...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 468889999999999999887743 43 34666777777788888888765321 11 110 0112223333344
Q ss_pred HHccCCHHHHHHHHHHH----hhcCC-CCCHHhHHHHHHHHHhcCC--------------------hHHHHHHHHHH---
Q 040580 124 YGRIGCFNEIISIIDQV----SCRNA-DLLPEVYSRAISCFGKQGQ--------------------LELMENTLKEM--- 175 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m----~~~~~-~~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m--- 175 (412)
+--.|.+++|.-.-.+- ++.|- ......+..+-..|...|. ++.|.++|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554332111 11110 1111244445555544332 33444444331
Q ss_pred -HHCCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHH---
Q 040580 176 -VSRGFS-VDSATGNAFIIYYSRFGSLTEMETAYGRLK----RSRHLI-DKEGIRAVSFTYLKERKFFMLGEFLRDV--- 245 (412)
Q Consensus 176 -~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~--- 245 (412)
.+.|-. .....|..|-+.|.-.|+++.|....+.=. +-|-+. ....+..+..++.-.|.++.|.+.++.-
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 111111 123456677777777889999887765432 223222 2345677778888889999888887752
Q ss_pred --hcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHH----c-CCCCcHhHHHHHHHHHHccCChhHHHHHHHHHH
Q 040580 246 --GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE----A-GFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316 (412)
Q Consensus 246 --~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 316 (412)
............-+|...|.-..++++|+..+.+-.. . ...-....+.+|-.+|...|.-++|+.+...-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3333333446777788888888889999888765321 1 123345788899999999999998887765543
No 215
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.23 E-value=0.24 Score=43.33 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHhhcCCCCCH---HhHHHHHHHHHhcCC-
Q 040580 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR--IG----CFNEIISIIDQVSCRNADLLP---EVYSRAISCFGKQGQ- 164 (412)
Q Consensus 95 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~- 164 (412)
+++...+++.|.+.|++.+..+|-+..-.... .. ...+|..+|+.|++...-.+. .++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567889999999999988777664444333 22 346789999999887643332 266666554 3333
Q ss_pred ---hHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 040580 165 ---LELMENTLKEMVSRGFSVDS--ATGNAFIIYYSRFGS--LTEMETAYGRLKRSRHLIDKEGIRAV 225 (412)
Q Consensus 165 ---~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 225 (412)
.+.++.+|+.+.+.|+..+. ...+.++..+..... ..++..+++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 35677888888888887643 333333333332222 44788889999999988776665544
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.15 E-value=0.024 Score=38.41 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=10.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
+++.+...|...|++++|+..|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444433
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.12 E-value=0.63 Score=38.42 Aligned_cols=181 Identities=10% Similarity=0.048 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 040580 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSV--DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229 (412)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 229 (412)
.-.....+...|++++|...|+.+...-... -....-.+..++-+.|+++.|...++...+.-.......+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 3344455678899999999999998763221 12344567788899999999999999988764322222333333333
Q ss_pred HhcccHHHHHHHHHHHhcCCCCc-----chHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCC
Q 040580 230 LKERKFFMLGEFLRDVGLGRKDL-----GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM 304 (412)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 304 (412)
+......... ....+. -...+..++.-|-...-..+|...+..+.+. .-...+ .+..-|.+.|.
T Consensus 88 ~~~~~~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~-~ia~~Y~~~~~ 156 (203)
T PF13525_consen 88 SYYKQIPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHEL-YIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHH-HHHHHHHCTT-
T ss_pred HHHHhCccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHccc
Confidence 3221111110 000000 0145666677777777777776666665532 111122 35667889999
Q ss_pred hhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhccccchH
Q 040580 305 FWDLHLSLEHMKHE--SVGPDLVTYGCVVDAYLDKRLGRNL 343 (412)
Q Consensus 305 ~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a 343 (412)
+..|..-++.+++. +........-.++.+|.+.|..+.+
T Consensus 157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 99999888888764 2222345666778888888877643
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.11 E-value=0.03 Score=37.99 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CcC-HHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSS----SF-VLS-VQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..+++.+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666777777777777777766542 11 122 4567777777777777777777777653
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.02 E-value=1.2 Score=42.33 Aligned_cols=86 Identities=13% Similarity=0.028 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHh----------
Q 040580 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLT---------- 290 (412)
Q Consensus 221 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------- 290 (412)
+...+..-+.+...+.-|.++|.+|+. ...++..+...+++.+|..+-++..+. .||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 333334444444555555566655532 234455556666666666555544332 33321
Q ss_pred -HHHHHHHHHHccCChhHHHHHHHHHHh
Q 040580 291 -TFNIRAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 291 -~~~~ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
-|...-.+|-+.|+-.+|.++++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 123333455666666666666665543
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.95 E-value=0.24 Score=46.81 Aligned_cols=238 Identities=10% Similarity=0.026 Sum_probs=135.5
Q ss_pred ccccCCCChHHHHHHHH---------Hhhc--cChhhHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 040580 21 SHQTHPKNGDLARKIIR---------YRKQ--EGFVDCASLVEDLGRKKK--PHLAHQLVNTVKSEGLLPDNSTLCALML 87 (412)
Q Consensus 21 ~~~~~~~~~~~A~~~~~---------~~~~--~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (412)
..|...|.+++|.++-- .+.. -+...++..=++|.+-++ +-+.+.-+++|+++|-.|+.... ..
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~ 640 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---AD 640 (1081)
T ss_pred hhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HH
Confidence 34567777777755421 1111 144456666667766554 34555566778888887886543 34
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHH-------Hh--h-----cCCCCCHHhHH
Q 040580 88 CYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQ-------VS--C-----RNADLLPEVYS 153 (412)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-------m~--~-----~~~~~~~~~~~ 153 (412)
.|+-.|++.+|.++|.+- |.. |..+..|.....+|.|.+++.. |. + +++.-. -
T Consensus 641 ~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP----k 707 (1081)
T KOG1538|consen 641 VFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP----K 707 (1081)
T ss_pred HHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc----H
Confidence 567788888888887543 322 2233444444455555444421 11 0 011111 1
Q ss_pred HHHHHHHhcCChHHHHHHHHH-----H-HHCCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 040580 154 RAISCFGKQGQLELMENTLKE-----M-VSRGFS---VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224 (412)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~-----m-~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (412)
+....+..+|+.++|..+.-+ | .+-+-+ .+..+...+..-+.+...+..|.++|..|-.. .+
T Consensus 708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ks 778 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KS 778 (1081)
T ss_pred HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HH
Confidence 233445566777777655421 1 111111 23345555555555666777888888877532 35
Q ss_pred HHHHHHhcccHHHHHHHHHHHhcCCCCc---------chHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 225 VSFTYLKERKFFMLGEFLRDVGLGRKDL---------GNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 225 li~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
+++.....+++++|..+-++...-.+++ ...-|.-.-++|.++|+-.+|.++++++...
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 6777788889999888887653333221 0122344457888889999999999888754
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.89 E-value=0.57 Score=35.95 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=19.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 040580 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127 (412)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 127 (412)
++..+...+.+.....+++.+.+.+ +.+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3344444444444444444444443 23444445555555443
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.87 E-value=0.64 Score=42.21 Aligned_cols=131 Identities=13% Similarity=0.100 Sum_probs=70.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSS-FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (412)
...|...|+..-+..-++.|..+|-+..+.| +.+++.+++++|..++ .|+...|.++|+--... .+-++.--+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 3455556666556666666666666666666 4556666666666554 34555666666543322 2222223334555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040580 158 CFGKQGQLELMENTLKEMVSRGFSVD--SATGNAFIIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 158 ~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 212 (412)
-+.+.++-+.|..+|+....+ +..+ ...|..+|.-=..-|++..+..+-+.+..
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 555666666666666643332 1112 34566666666666666665555555543
No 223
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.80 E-value=0.7 Score=36.38 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 040580 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191 (412)
Q Consensus 135 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 191 (412)
+.++.+.+.++++++..|..++..+.+.|++.. +.++.+.++-||.......+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHH
Confidence 334444455555555566666666666655443 34444555555554444333
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.80 E-value=1.3 Score=39.51 Aligned_cols=284 Identities=10% Similarity=-0.011 Sum_probs=179.5
Q ss_pred CCCChHHHHHHHHHhhc---cChhhHHHHHHHH--hcCCChhHHHHHHHHHHhcCCCCCHHh--HHHHHHHHHhcCChHH
Q 040580 25 HPKNGDLARKIIRYRKQ---EGFVDCASLVEDL--GRKKKPHLAHQLVNTVKSEGLLPDNST--LCALMLCYANNGFVLE 97 (412)
Q Consensus 25 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~ 97 (412)
-.|+-..|+++-.+..+ .|....-.++.+- .-.|+.+.|.+-|+.|... |.... ...|.-..-+.|+.+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 46777888887766543 3544444444433 3469999999999999863 33332 2334444567899999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC-CCCHH--hHHHHHHHHH---hcCChHHHHHH
Q 040580 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA-DLLPE--VYSRAISCFG---KQGQLELMENT 171 (412)
Q Consensus 98 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~--~~~~li~~~~---~~g~~~~a~~~ 171 (412)
|.+.-+..-..- +-=...+.+.+...+..|+++.|+++++.-+...+ .++.. .-..|+.+-. -..+...|.+.
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 999888877653 33457889999999999999999999997766542 22221 2223332221 12345566655
Q ss_pred HHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHH--HHHHHHHHHhcC
Q 040580 172 LKEMVSRGFSVDSA-TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF--MLGEFLRDVGLG 248 (412)
Q Consensus 172 ~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~ 248 (412)
-.+..+ +.||.. .-..-..++.+.|++.++-.+++.+-+....|+ .+. +..+.+.|+.- ...+. ..+..-
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdta~dRlkRa-~~L~sl 324 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDTALDRLKRA-KKLESL 324 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCcHHHHHHHH-HHHHhc
Confidence 555444 566543 233455788999999999999999988754444 332 23344555532 22211 111111
Q ss_pred CCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH-ccCChhHHHHHHHHHHhCCCCC
Q 040580 249 RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS-RMSMFWDLHLSLEHMKHESVGP 322 (412)
Q Consensus 249 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~g~~p 322 (412)
.++ +...--.+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+..+..-.|
T Consensus 325 k~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 325 KPN-NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred Ccc-chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 222 2356666677778889998887766665543 788888877777654 4589999998888877643333
No 225
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=2.3 Score=41.91 Aligned_cols=71 Identities=6% Similarity=-0.046 Sum_probs=41.8
Q ss_pred HHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCccc----HHHHHHHhccCchHHHHHHHHHHHHcCc
Q 040580 330 VVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHS----SSEAFLEFKRQRKWTYRKLIAVYLKKQL 403 (412)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~----a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 403 (412)
++..+....+++.+....+..... +...|..+++.+.+ +..++ ..+++..+...+...-..+++.+++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~---~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE---DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc---ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 444555666666666666666322 44556677777766 54443 3444444555666666777777777654
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=95.71 E-value=0.56 Score=36.60 Aligned_cols=87 Identities=9% Similarity=-0.066 Sum_probs=45.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 168 (412)
+-..|++++|..+|.-+.-.+ +-|..-|..|..++-..+++++|...|...-..+ .-||..+-..-.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 345566666666666555544 2344445555555555566666666555443333 23333344444555555555555
Q ss_pred HHHHHHHHH
Q 040580 169 ENTLKEMVS 177 (412)
Q Consensus 169 ~~~~~~m~~ 177 (412)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 555555544
No 227
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.65 E-value=0.72 Score=35.38 Aligned_cols=129 Identities=9% Similarity=0.042 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 040580 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123 (412)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 123 (412)
......++..+...+.+......++.+...+ ..+...++.++..|++.+. +.....++. .++......+++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHH
Confidence 3345677888887888999999999988876 3677788899999887643 333344332 1233334557777
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 040580 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ-GQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 195 (412)
|.+.+.++++.-++.++.. |...+..+... ++++.|.+++.+- -+...|..++..+.
T Consensus 79 c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777777777776621 22233333333 6777777766641 14456666665554
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.60 E-value=0.66 Score=34.57 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040580 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215 (412)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 215 (412)
.+..+......|.-++-.++..++.+. -+|++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334444444555555554555444431 233444444444555555555555555555544443
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.44 E-value=0.36 Score=44.16 Aligned_cols=63 Identities=11% Similarity=-0.035 Sum_probs=38.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV----QVLSDLMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
+...++.+..+|.+.|++++|...|++.++.+ |+. .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666666666666666666666542 332 2466666666666666666666666654
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.39 E-value=0.38 Score=43.98 Aligned_cols=64 Identities=17% Similarity=0.009 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDN----STLCALMLCYANNGFVLEAQVVWEELLSS 108 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (412)
+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|...++..++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667888999999999999999999998875 5663 35888999999999999999999999875
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.36 E-value=0.58 Score=43.61 Aligned_cols=153 Identities=16% Similarity=0.028 Sum_probs=97.6
Q ss_pred CCCChHHHHHHHH--Hhh-ccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 040580 25 HPKNGDLARKIIR--YRK-QEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVV 101 (412)
Q Consensus 25 ~~~~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 101 (412)
-.++++++.+..+ ++. .-+....+.+++.+-+.|.++.|+++-..-.. -.....+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHH
Confidence 3556666544443 111 11344578888888888988888887654332 23445677888888765
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 040580 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS 181 (412)
Q Consensus 102 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 181 (412)
-++ .++...|..|.+...+.|+++-|++.|++.. -|..|+--|.-.|+.+...++.+....+|-
T Consensus 341 a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 341 AKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp CCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 432 3467799999999999999999999998774 367777788888998888888877777653
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040580 182 VDSATGNAFIIYYSRFGSLTEMETAYGRL 210 (412)
Q Consensus 182 p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 210 (412)
++....++.-.|+.++..+++..-
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444555556668877777666543
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.31 E-value=0.69 Score=43.12 Aligned_cols=159 Identities=11% Similarity=0.040 Sum_probs=97.8
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHH
Q 040580 52 EDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131 (412)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 131 (412)
+...-.|+++++.+..+.-.-.. .....-.+.+++-+.+.|.++.|+++-.+-. .-.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 34455678888777664111110 1124557788888888999999888653322 2245566789999
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040580 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211 (412)
Q Consensus 132 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 211 (412)
.|.++.++. .++..|..|-....+.|+++-|++.|.+... |..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 887776544 3567899999999999999999988876543 6667777888888888888877777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 040580 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244 (412)
Q Consensus 212 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 244 (412)
..|- ++....++.-.|++++..+++.+
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6652 34444455555666665555553
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.22 E-value=1.8 Score=40.87 Aligned_cols=164 Identities=12% Similarity=-0.039 Sum_probs=105.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCh-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCH
Q 040580 150 EVYSRAISCFGKQGQLELMENTLKEMVSR-GFSVDS-----ATGNAFIIYYSR----FGSLTEMETAYGRLKRSRHLIDK 219 (412)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-----~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 219 (412)
..+..+++..+-.||-+.+++.+.+-.+. |+.-.. -.|..++..++. ..+.+.|.+++..+.+. -|+.
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s 266 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNS 266 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCc
Confidence 35556667777889999999998886553 232111 224444444443 34678899999998875 3666
Q ss_pred HHHHHH-HHHHHhcccHHHHHHHHHHHhcC---CCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 040580 220 EGIRAV-SFTYLKERKFFMLGEFLRDVGLG---RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295 (412)
Q Consensus 220 ~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 295 (412)
..|... ...+...|++++|.+.|++.... -+......+--+.-.+...+++++|...|.++.+.. ..+..+|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 665554 34555689999999999964321 112222344455666778899999999999999753 3444555444
Q ss_pred HHHH-HccCCh-------hHHHHHHHHHH
Q 040580 296 AVAF-SRMSMF-------WDLHLSLEHMK 316 (412)
Q Consensus 296 l~~~-~~~g~~-------~~a~~~~~~m~ 316 (412)
..+| ...|+. ++|.++|.+..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4333 356666 77888887754
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.20 E-value=4.4 Score=41.67 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=18.2
Q ss_pred CCCHHhHHHHHHHHHhcC--ChHHHHHHHHHHHh
Q 040580 76 LPDNSTLCALMLCYANNG--FVLEAQVVWEELLS 107 (412)
Q Consensus 76 ~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~ 107 (412)
.|+ .-...+|.++.+.+ .++.++........
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 444 33445677777776 56666665555553
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.15 E-value=4.6 Score=41.59 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 040580 131 NEIISIIDQVSCRNADLLPEVYSRAISCFGKQG--QLELMENTLKEMVS 177 (412)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~ 177 (412)
+...+.+.....+. .|+ .-.-.+|.+|.+.+ .++.++....+.+.
T Consensus 774 ~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 774 NSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 33444444443333 233 23345778888887 77788877777765
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.08 E-value=2.5 Score=38.18 Aligned_cols=99 Identities=10% Similarity=0.067 Sum_probs=68.6
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCChHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 040580 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRG---FSVDSATGNAFIIYYSR---FGSLTEMETAYGRLKRSRHLIDKE 220 (412)
Q Consensus 147 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 220 (412)
.++++...++-+|-...+++..+++++.+..-. +.-+...-....-++.+ .|+.++|.+++..+....-.+++.
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 445566667777999999999999999998751 11122222234445566 899999999999976666678888
Q ss_pred HHHHHHHHHHhc---------ccHHHHHHHHHHH
Q 040580 221 GIRAVSFTYLKE---------RKFFMLGEFLRDV 245 (412)
Q Consensus 221 ~~~~li~~~~~~---------~~~~~a~~~~~~~ 245 (412)
++..+...|-.. ..+++|.+.+.+-
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 888887777542 2355666666653
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=94.99 E-value=1.3 Score=34.58 Aligned_cols=92 Identities=5% Similarity=-0.093 Sum_probs=70.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 040580 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198 (412)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 198 (412)
....-+-..|++++|..+|+-+..-+ ..++.-|..|..++-..+++++|+..|...-..+.. |...+--.-.++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 34444567899999999999887766 466777777888888899999999999876554332 3334445677888999
Q ss_pred CHHHHHHHHHHHHh
Q 040580 199 SLTEMETAYGRLKR 212 (412)
Q Consensus 199 ~~~~a~~~~~~~~~ 212 (412)
+.+.|...|.....
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988887
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=1.5 Score=37.64 Aligned_cols=173 Identities=15% Similarity=0.139 Sum_probs=111.3
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 040580 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSF 110 (412)
Q Consensus 31 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 110 (412)
..+++++++..+....--.-.......|++.+|..+|....... +-+...--.+..++...|+.+.|..++..+....-
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 44566666655422222223445667899999999999888763 22456667788889999999999999998865432
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChHHHH
Q 040580 111 VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR--GFSVDSATGN 188 (412)
Q Consensus 111 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~ 188 (412)
.........-|..+.+.....+...+-++... + +-|...--.+...+...|+.+.|++.+-.+.++ |.. |...-.
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa-d-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk 276 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAA-D-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARK 276 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHH
Confidence 22223333445555555555555555555432 2 335566677888889999999999888777665 333 556667
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 040580 189 AFIIYYSRFGSLTEMETAY 207 (412)
Q Consensus 189 ~li~~~~~~g~~~~a~~~~ 207 (412)
.++..+.-.|..+.+...+
T Consensus 277 ~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 277 TLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHHHhcCCCCHHHHHH
Confidence 7888777777444444333
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.98 E-value=1.1 Score=33.48 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=81.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 040580 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELME 169 (412)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 169 (412)
.-.|.+++..++..+..+. .+..-+|.+|.-....-+-+-..++++.+-. -.|.. ..|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHH
Confidence 3467778888888777763 3555666666665555666666666665532 12221 223333333
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC
Q 040580 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249 (412)
Q Consensus 170 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 249 (412)
..+-.+- .+...+...+......|+-+...+++.++.+ +-.+++...-.+..+|.+.|+..++.+++.+.-..+
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 2222211 2455667778888899999999999999876 336788888899999999999999999998876555
Q ss_pred C
Q 040580 250 K 250 (412)
Q Consensus 250 ~ 250 (412)
.
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
No 240
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.98 E-value=2.3 Score=37.16 Aligned_cols=160 Identities=14% Similarity=0.061 Sum_probs=84.3
Q ss_pred cCCChhHHHHHHHHHHhcC--CCCCHH------hHHHHHHHHHhcC-ChHHHHHHHHHHHhC--------CCCcC-----
Q 040580 56 RKKKPHLAHQLVNTVKSEG--LLPDNS------TLCALMLCYANNG-FVLEAQVVWEELLSS--------SFVLS----- 113 (412)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~g--~~p~~~------~~~~ll~~~~~~~-~~~~a~~~~~~m~~~--------~~~~~----- 113 (412)
+.|+.+.|..++.+..... ..|+.. .|+.-... ...+ +++.|...+++..+. ...|+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4566666666666655422 122211 22222222 2334 666665555544321 12233
Q ss_pred HHHHHHHHHHHHccCCHHH---HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 040580 114 VQVLSDLMDAYGRIGCFNE---IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190 (412)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 190 (412)
..++..++.+|...+..+. |.++++.+.. ..+-.|.++-.-+..+.+.++.+.+.+++.+|...-.. ....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHH
Confidence 2466777777777776554 4445555533 22333556666667777788888888888888776221 23444444
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHhCCCCCCH
Q 040580 191 IIYY---SRFGSLTEMETAYGRLKRSRHLIDK 219 (412)
Q Consensus 191 i~~~---~~~g~~~~a~~~~~~~~~~~~~~~~ 219 (412)
+..+ ... ....+...+..+....+.|..
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 4444 332 234555666665555445444
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=94.87 E-value=3.2 Score=38.34 Aligned_cols=77 Identities=9% Similarity=0.035 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175 (412)
Q Consensus 97 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 175 (412)
+|.++-+...+.+ +-|......+..+..-.++++.|...|++....+ +-.+.+|...-....-+|+.++|.+.+++.
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444 3444444444444444445555555555554322 122223333333344445555555555543
No 242
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.83 E-value=0.59 Score=37.53 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH--hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 115 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
..+..+...|.+.|+.+.|.+.|.++.+....+... .+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567778888888888888888888887765444332 666777888888888888877776654
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.74 E-value=3.3 Score=37.87 Aligned_cols=144 Identities=9% Similarity=-0.006 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhH-HHHHH
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAG-FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY-GCVVD 332 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li~ 332 (412)
.+|.+.+..-.+...++.|..+|-+.++.| +.|++..++++|.-++. |+...|.++|+.=..+ -||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 567778888888888888899999988887 67788888888887776 5667788888653321 2333222 34455
Q ss_pred HHHhccccchHHHHHHhccCCCCC--CcccHHHHHHHHhc-CCcccHHHHHHHhcc--CchHHHHHHHHHHHHc
Q 040580 333 AYLDKRLGRNLDFGLSKMNLDDSP--VVSTDPYVFEAFGK-GDFHSSSEAFLEFKR--QRKWTYRKLIAVYLKK 401 (412)
Q Consensus 333 ~~~~~~~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~-~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 401 (412)
-+.+.++-..|..+|+.--..+.- -...|..+|..=++ |+...+..+-.+|.. |...+-....+.|.-+
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 556677777888888744111111 13457777776666 777766555555544 4444444444555443
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.79 Score=41.05 Aligned_cols=92 Identities=16% Similarity=0.017 Sum_probs=51.3
Q ss_pred HHHHhcCCChhHHHHHHHHHHhc-----CCCC---------CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHH
Q 040580 51 VEDLGRKKKPHLAHQLVNTVKSE-----GLLP---------DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQV 116 (412)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~-----g~~p---------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 116 (412)
-..+.+.|++..|..-|++.... +..+ -...+..|.-++.+.+++..|++.-+..+..+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 33566788888888888775431 1111 11234444445555556666665555555554 455555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhc
Q 040580 117 LSDLMDAYGRIGCFNEIISIIDQVSCR 143 (412)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 143 (412)
.---..++...|+++.|...|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555555555556666666666655543
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.57 Score=41.90 Aligned_cols=119 Identities=13% Similarity=-0.041 Sum_probs=90.1
Q ss_pred ccccCCCChHHHHHHHHHhhcc------------------ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhH
Q 040580 21 SHQTHPKNGDLARKIIRYRKQE------------------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTL 82 (412)
Q Consensus 21 ~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 82 (412)
..|.+.|++..|...+++...- -..++..+.-++.+.+++..|++.-++....+ ++|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4677899999999888774321 23356777888899999999999999998875 5688888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHH-HHHHHHHHh
Q 040580 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE-IISIIDQVS 141 (412)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~ 141 (412)
-.-..++...|+++.|...|+.+++.. |-|..+-+-|+.+-.+...... ..++|..|-
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999964 4455556666665555544443 356676664
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.64 E-value=2.8 Score=36.59 Aligned_cols=159 Identities=17% Similarity=0.029 Sum_probs=100.6
Q ss_pred cCCCChHHHHHHHHHhhcc----C--------hhhHHHHHHHHhcCCChhHHHHHHHHHHhc--------CCCCCH----
Q 040580 24 THPKNGDLARKIIRYRKQE----G--------FVDCASLVEDLGRKKKPHLAHQLVNTVKSE--------GLLPDN---- 79 (412)
Q Consensus 24 ~~~~~~~~A~~~~~~~~~~----~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~~p~~---- 79 (412)
.+.|+++.|..++.+.... + ...||.-...+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4789999999999887642 2 223555555554443888887777665432 233443
Q ss_pred -HhHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 040580 80 -STLCALMLCYANNGFVL---EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155 (412)
Q Consensus 80 -~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 155 (412)
.++..++.++...+..+ +|.++.+.+.+.. +-...++-.-++.+.+.++.+.+.+++.+|... +......+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 45667778887777654 4566666665432 223556666778888899999999999999865 33334466666
Q ss_pred HHHHHh--cCChHHHHHHHHHHHHCCCCCCh
Q 040580 156 ISCFGK--QGQLELMENTLKEMVSRGFSVDS 184 (412)
Q Consensus 156 i~~~~~--~g~~~~a~~~~~~m~~~g~~p~~ 184 (412)
+..+.. ......+...+..+....+.|..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 555522 23345667777777665555554
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.55 E-value=1 Score=33.56 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=66.1
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHH---HHHHHHhc
Q 040580 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR-GFSVDSATGNA---FIIYYSRF 197 (412)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~---li~~~~~~ 197 (412)
-+.+..|+++.|++.|.+...-- +-.+..||.-..++.-.|+.++|++=+++..+. |-+ +...+.+ -...|-..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 35677899999999998886543 456778999999999999999998888887664 332 3333332 22345567
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 040580 198 GSLTEMETAYGRLKRSRH 215 (412)
Q Consensus 198 g~~~~a~~~~~~~~~~~~ 215 (412)
|+.+.|..=|+..-+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 888888888888777663
No 248
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.47 E-value=0.62 Score=40.06 Aligned_cols=77 Identities=13% Similarity=0.037 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR-----SRHLIDKEGIRAV 225 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 225 (412)
++..++..+...|+.+.+...++++...... +...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4555555555555555555555555554211 445555555555555555555555555543 3555555555555
Q ss_pred HHH
Q 040580 226 SFT 228 (412)
Q Consensus 226 i~~ 228 (412)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 249
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.41 E-value=2 Score=33.91 Aligned_cols=137 Identities=11% Similarity=0.096 Sum_probs=90.9
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 040580 64 HQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143 (412)
Q Consensus 64 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 143 (412)
.+.+..+.+.|++|+...+..++..+.+.|++.... .+++.++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 455666677889999999999999999999865544 45566656665555544433332 233344443344332
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040580 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 144 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 214 (412)
=- ..+..++..+...|++-+|+++.+..... +...-..++.+..+.+|...-..+++.....+
T Consensus 88 L~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 LG----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 10 26778888889999999999988775332 22334567888888888887777777776654
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=2.7 Score=35.12 Aligned_cols=115 Identities=10% Similarity=0.054 Sum_probs=65.8
Q ss_pred CCChHHHHHHHHHHHH---cCC--CCcHhHHHHHHHHHHccCChhHHHHHHHHHH----hCCCCCCH-hhHHHHHHHHHh
Q 040580 267 NFKMKSLQREFMRMSE---AGF--HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK----HESVGPDL-VTYGCVVDAYLD 336 (412)
Q Consensus 267 ~g~~~~a~~~~~~m~~---~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~----~~g~~p~~-~~~~~li~~~~~ 336 (412)
+.++++|+++|++-.. .+- +.-...+..+-..+.+...+++|-..+.+-. +..-.|+. ..|.+.|-.+..
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 3456677777666442 110 0111223344445556666665544333211 11122222 345566667777
Q ss_pred ccccchHHHHHHhc----cCCCCCCcccHHHHHHHHhcCCcccHHHHHH
Q 040580 337 KRLGRNLDFGLSKM----NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFL 381 (412)
Q Consensus 337 ~~~~~~a~~~~~~m----~~~~~p~~~~~~~li~~~~~~~~~~a~~~~~ 381 (412)
..++..+++.++.- ....+-+..+...|+.+|-.|+.+++.+++.
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 88999999999884 2233345667888999999999988776653
No 251
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=5.8 Score=38.71 Aligned_cols=157 Identities=11% Similarity=0.003 Sum_probs=83.3
Q ss_pred cccccccCCCChHHHHHHHHHhhcc-----------------ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHH
Q 040580 18 NVPSHQTHPKNGDLARKIIRYRKQE-----------------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS 80 (412)
Q Consensus 18 ~l~~~~~~~~~~~~A~~~~~~~~~~-----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 80 (412)
++..++.+..++++-..+.+.++-. ...+-..+|.-+...+.+..|+++-..+...-..- ..
T Consensus 394 sfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~ 472 (829)
T KOG2280|consen 394 SFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DR 472 (829)
T ss_pred hhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cH
Confidence 4444555666666655555544321 11123345666677777777777776665321111 45
Q ss_pred hHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC----CCCHHhHH
Q 040580 81 TLCALMLCYANNGFV---LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA----DLLPEVYS 153 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~ 153 (412)
.|.....-+.+..+. +.+..+-+++... . .....|..+.+..-.+|+.+.|..+++.=...+. -.+-.-+.
T Consensus 473 Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~ 550 (829)
T KOG2280|consen 473 VLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSS 550 (829)
T ss_pred HHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHH
Confidence 555555555555322 2222222222221 2 3345566666666677888888777653322221 11112455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 040580 154 RAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
..+.-+...|+.+-...++-++.+
T Consensus 551 ~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 551 LALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 566667777887777777776655
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.07 E-value=6.2 Score=38.31 Aligned_cols=73 Identities=11% Similarity=-0.088 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCC--CCHHhHHHHHHHHHhcCChHHHHHHHH
Q 040580 26 PKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL--PDNSTLCALMLCYANNGFVLEAQVVWE 103 (412)
Q Consensus 26 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~ 103 (412)
-|+|++|.+++-.+..+|. .|....+.|++-+..++++.=- .+.. --...|+.+...++....|++|.+.|.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888877776654 3555666677766666653311 1100 012356666666666666666666554
Q ss_pred H
Q 040580 104 E 104 (412)
Q Consensus 104 ~ 104 (412)
.
T Consensus 821 ~ 821 (1189)
T KOG2041|consen 821 Y 821 (1189)
T ss_pred h
Confidence 3
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.06 E-value=0.17 Score=29.76 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=9.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 040580 85 LMLCYANNGFVLEAQVVWEELLS 107 (412)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~ 107 (412)
+..++.+.|++++|.++|++.++
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.99 E-value=0.27 Score=28.83 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=19.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS 153 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 153 (412)
++..+...|.+.|++++|.++|++..+.. +-++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHH
Confidence 34455555666666666666666655543 33343443
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=1.3 Score=37.63 Aligned_cols=27 Identities=7% Similarity=-0.145 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSE 282 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (412)
++--|.....+.|+.++|..+|++..+
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333444444445555555555555543
No 256
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.80 E-value=2.9 Score=33.58 Aligned_cols=63 Identities=14% Similarity=0.050 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDS--ATGNAFIIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
.+..+...|.+.|+.+.|++.|.++.+....|.. ..+-.+|....-.+++..+.....+....
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7888899999999999999999999887655543 45667888888899999988888776653
No 257
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=1.6 Score=37.83 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhC
Q 040580 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318 (412)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 318 (412)
++++++.++..=.+.|+-||.+++..+|+.+.+.+++.+|..+...|..+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 67788888888888999999999999999999999999988888777653
No 258
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.55 E-value=1.1 Score=38.57 Aligned_cols=81 Identities=11% Similarity=0.169 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChHHHH
Q 040580 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS-----RGFSVDSATGN 188 (412)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 188 (412)
..++..++..+...|+.+.+.+.++++.... +.+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4578889999999999999999999998776 56667999999999999999999999998865 58999888877
Q ss_pred HHHHHHH
Q 040580 189 AFIIYYS 195 (412)
Q Consensus 189 ~li~~~~ 195 (412)
.......
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 7777644
No 259
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.44 E-value=0.028 Score=43.50 Aligned_cols=129 Identities=10% Similarity=0.071 Sum_probs=81.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcc
Q 040580 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR 338 (412)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 338 (412)
.++..+.+.+.++.....++.+...+-.-+....+.++..|++.++.++..++++. .+..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 46777777888888888888888666555677778888888888777777777662 11123345667777778
Q ss_pred ccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhccCchHHHHHHHHHHHHcCcc
Q 040580 339 LGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQLR 404 (412)
Q Consensus 339 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 404 (412)
.++.+.-++.++..... .+..+.. +++..|.+.+.+. +++..|..+++.+...+..
T Consensus 85 l~~~a~~Ly~~~~~~~~--------al~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDE--------ALEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SHHHHHHHHHCCTTHTT--------CSSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTCT
T ss_pred hHHHHHHHHHHcccHHH--------HHHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCcc
Confidence 77777777777632111 0111222 5666666333322 5688888888888776653
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.35 E-value=2.8 Score=31.98 Aligned_cols=73 Identities=12% Similarity=0.050 Sum_probs=42.7
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCHH---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLPE---VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 196 (412)
...+.|++++|.+.|+.+..+- +.++. +--.++.+|.+.+++++|...+++..+....-...-|...+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3445677777777777776542 22222 4455667777777777777777777665433223445555555543
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.25 E-value=1.9 Score=36.57 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhcC--CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-ChHHHHHH
Q 040580 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRN--ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS-V-DSATGNAF 190 (412)
Q Consensus 115 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~l 190 (412)
..|+.-+..+ +.|++..|...|....+.. -...+..+-.|..++...|+++.|-.+|..+.+.-.+ | -...+-.|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3566666544 5667888888888877642 1233446777888888888888888888887765221 1 12455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 040580 191 IIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 191 i~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
.....+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 67777888888888888887765
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=3.9 Score=35.93 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
|+..+|-..++++++. +|.|...++.--.+|.-.|+.+.....++++
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kI 163 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKI 163 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHh
Confidence 4444444444444433 2444444444444444444444444444444
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.20 E-value=3.4 Score=32.57 Aligned_cols=129 Identities=5% Similarity=0.084 Sum_probs=68.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH--HHHHhcccH
Q 040580 160 GKQGQLELMENTLKEMVSRGFSVDSA-TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE-GIRAVS--FTYLKERKF 235 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li--~~~~~~~~~ 235 (412)
.+.+..++|+.-|.++.+.|...=.+ .---......+.|+...|...|+++-.....|... -...|= -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44556666666666666655431111 11112223445666777777777666554333322 111121 223456666
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc
Q 040580 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288 (412)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 288 (412)
++.....+-+...+...-...-..|--+-.+.|++.+|.+.|..+......|.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 66666666554444333334455666666677788888877777765433443
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=5.5 Score=34.39 Aligned_cols=120 Identities=8% Similarity=-0.026 Sum_probs=52.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHH
Q 040580 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 238 (412)
....|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34555666666666655543221 22333445555666666666666665554322111111111222223333333333
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040580 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281 (412)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 281 (412)
..+-.+....+.++ ..--.+...+...|+.++|+..+-.+.
T Consensus 223 ~~l~~~~aadPdd~--~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAADPDDV--EAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333322222222 344444555555566666655444433
No 265
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.54 E-value=0.95 Score=39.12 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=29.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040580 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107 (412)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (412)
++++++.++..=++.|+-||.++++.+|..+.+.+++.+|.++...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3556666666656666666666666666666666666666665555544
No 266
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.26 E-value=3 Score=29.55 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 133 IISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 133 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
..+-++.+-..++.|+|.+..+.+.+|.+.+++..|.++|+..+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555554443
No 267
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.15 E-value=1.5 Score=33.40 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=36.9
Q ss_pred HHhcCCChhHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040580 53 DLGRKKKPHLAHQLVNTVKSEGL--LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109 (412)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 109 (412)
...+.|++++|.+.|+.+..+-. +-...+--.|+.++-+.+++++|...+++.++..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34466777777777777766421 1123445557777777777777777777777754
No 268
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.11 E-value=1.3 Score=30.90 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=11.5
Q ss_pred CCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040580 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIID 138 (412)
Q Consensus 109 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 138 (412)
++.|+..+..+.+++|-+.+|+..|.++|+
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE 66 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILE 66 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333333333333333333333333333333
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=7 Score=34.43 Aligned_cols=188 Identities=10% Similarity=-0.048 Sum_probs=121.2
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH--HH--HHHHHHHhcCCH
Q 040580 125 GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSAT--GN--AFIIYYSRFGSL 200 (412)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~--~li~~~~~~g~~ 200 (412)
.-.|++.+|...++++.+. .+.|...+.-.-.+|...|+.+.-...+++.... ..||... |. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4567888888888888754 4666668888889999999999999999888654 1233333 32 223344578999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcch---HHHHHHHHHHhcCCChHHHHHHH
Q 040580 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGN---LLWNLLLLSYAGNFKMKSLQREF 277 (412)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~ 277 (412)
++|++.-++..+.+ +.|.....++.+.+--.|+..++.++..+-...-...+. .-|=.....+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988887765 457777778888888899999999988864333222111 11222334456668999999999
Q ss_pred HHHHHcCC-CCcHhH---HHHHHHHHHccCChhHHHHHHHHH
Q 040580 278 MRMSEAGF-HPDLTT---FNIRAVAFSRMSMFWDLHLSLEHM 315 (412)
Q Consensus 278 ~~m~~~~~-~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~m 315 (412)
++-.-..+ +-|... |.-+...-.+...+.+..++-+.+
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 87543222 334322 222333344444444444444444
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.00 E-value=8.6 Score=34.28 Aligned_cols=54 Identities=6% Similarity=-0.155 Sum_probs=26.4
Q ss_pred HHHHhcCCChHHHHHHHHHHH----HcCCCCc-HhHHHHHHHHHHccCChhHHHHHHHH
Q 040580 261 LLSYAGNFKMKSLQREFMRMS----EAGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEH 314 (412)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~----~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (412)
..++-..|+..+|.+.-++.. +.|-+|- ....-.+.+.|...|+.+.|+.-|+.
T Consensus 213 aValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 213 AVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 344555565555555554433 2232221 12233455556666776666665544
No 271
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.89 E-value=0.13 Score=39.76 Aligned_cols=54 Identities=7% Similarity=0.076 Sum_probs=27.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 040580 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103 (412)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 103 (412)
++..+.+.+.++.....++.+...+..-+....+.++..|++.++.+....+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444555555555555555544434445555555555555555455544444
No 272
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.82 E-value=3.4 Score=29.27 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 040580 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157 (412)
Q Consensus 97 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (412)
+..+-++.+...++.|+..+..+.+++|-+.+++..|.++|+-++.+- ......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 345555666666777777777777777777777777777777776543 222225555543
No 273
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=91.79 E-value=5.7 Score=35.98 Aligned_cols=260 Identities=10% Similarity=-0.078 Sum_probs=149.0
Q ss_pred cccCCCChHHHHHHHHHhhcc---Chh----hHHHHHHHHhcCCChhHHHHHHHHH--Hh--cCCCC-CHHhHHHHHHHH
Q 040580 22 HQTHPKNGDLARKIIRYRKQE---GFV----DCASLVEDLGRKKKPHLAHQLVNTV--KS--EGLLP-DNSTLCALMLCY 89 (412)
Q Consensus 22 ~~~~~~~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~~~~~~~a~~~~~~m--~~--~g~~p-~~~~~~~ll~~~ 89 (412)
-+++.|+......+|+...+- |.. .|..|-.+|.-.+++++|++.-..= .. .|-+. ...+...|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 478999999999999988764 322 3556666666677888887653221 10 11000 111222233333
Q ss_pred HhcCChHHHHHHHHH----HHhCCC-CcCHHHHHHHHHHHHccCC--------------------HHHHHHHHHHHhh--
Q 040580 90 ANNGFVLEAQVVWEE----LLSSSF-VLSVQVLSDLMDAYGRIGC--------------------FNEIISIIDQVSC-- 142 (412)
Q Consensus 90 ~~~~~~~~a~~~~~~----m~~~~~-~~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~-- 142 (412)
--.|.+++|.-.-.+ ..+.|- ......+..|...|...|+ ++.|.++|.+=.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555432211 122221 1123345556666655442 2334444442211
Q ss_pred --cCCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH---
Q 040580 143 --RNAD-LLPEVYSRAISCFGKQGQLELMENTLKEMV----SRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLK--- 211 (412)
Q Consensus 143 --~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~--- 211 (412)
.|-. .--..|..|-+.|.-.|+++.|+...+.-. +-|-+. ....++.+-+++.-.|+++.|.+.|..-.
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1100 001267777777777899999987765432 222211 34567788889999999999998886643
Q ss_pred -hCCCC-CCHHHHHHHHHHHHhcccHHHHHHHHHHH-----hcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040580 212 -RSRHL-IDKEGIRAVSFTYLKERKFFMLGEFLRDV-----GLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281 (412)
Q Consensus 212 -~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 281 (412)
+.|-+ ....+.-+|...|.-..++++|+..+.+- .....--...++-+|..+|...|..++|+...+.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33322 34456777888888888888888877652 001111123678889999999999999987766544
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.57 E-value=7.9 Score=36.09 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=35.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 118 SDLMDAYGRIGCFNEIISIIDQVSCRNADL-LPEVYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 118 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
..|..++-+.|+.++|.+.|++|.+..-.. .-.+...|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 345555556677777777777765432111 122555667777777777777777766643
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.43 E-value=5.6 Score=31.02 Aligned_cols=108 Identities=10% Similarity=-0.113 Sum_probs=50.4
Q ss_pred cccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHH
Q 040580 232 ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311 (412)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 311 (412)
.++.+++..++..+..-.|.. ...-..-...+...|++.+|+++|+++.+. .|....-..|+..|.....-..=...
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~-~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~Wr~~ 99 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEF-PELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSWRRY 99 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHHHHH
Confidence 455566666666554444432 112222234456677888888888887654 23332233333333332222122222
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhccccchHHH
Q 040580 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345 (412)
Q Consensus 312 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 345 (412)
-+++.+.+-.|+. ..+++.+....+...+..
T Consensus 100 A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 100 ADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 2334444444433 235555555555544444
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.37 E-value=6 Score=31.25 Aligned_cols=133 Identities=9% Similarity=0.149 Sum_probs=66.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHH---
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ-VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS--- 153 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--- 153 (412)
+...|...+. +++.++.++|+.-|..+.+.|...-.. .---......+.|+-..|...|.++-... +.|....
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt--~~P~~~rd~A 134 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT--SIPQIGRDLA 134 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC--CCcchhhHHH
Confidence 3444554444 355666667777777776655332211 11222334455666666666666664332 2222221
Q ss_pred HH--HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040580 154 RA--ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 154 ~l--i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
-| .-.+..+|.++.+..-.+.+-..|-..-...-..|--+-.+.|++..|.+.|.++...
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11 1123455666666555555544433323333444555555666666666666666543
No 277
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.36 E-value=4.8 Score=30.10 Aligned_cols=52 Identities=13% Similarity=0.065 Sum_probs=25.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
++..|+.+.|++.|.+.+..- +.+...||.-..++--.|+.++|++=+++..
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 344455555555555444431 3344455555555555555555554444443
No 278
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.30 E-value=7.2 Score=32.00 Aligned_cols=201 Identities=14% Similarity=0.035 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhc-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 040580 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCR-NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192 (412)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 192 (412)
...+......+...+++..+...+...... ........+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 344444555555555555555555544331 1122223444444444455555555555555544322221 11111111
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 040580 193 -YYSRFGSLTEMETAYGRLKRSRH--LIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269 (412)
Q Consensus 193 -~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 269 (412)
.+...|+++.+...+........ ......+......+...++.+++...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45555556665555555533111 011222222222233444455555444443222222112445555555555556
Q ss_pred hHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 040580 270 MKSLQREFMRMSEAGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
.+.+...+...... .|+ ...+..+...+...+..+.+...+.....
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666555543 222 22233333333344445555555554433
No 279
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.21 E-value=9.2 Score=33.06 Aligned_cols=116 Identities=9% Similarity=0.009 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHh-cC-ChHHHHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCHHHHH
Q 040580 129 CFNEIISIIDQVSC-RNADLLPEVYSRAISCFGK-QG-QLELMENTLKEMVS-RGFSVDSATGNAFIIYYSRFGSLTEME 204 (412)
Q Consensus 129 ~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~ 204 (412)
.+.+|+++|+.... ..+..|+.+...+++.... .+ ....-.++.+-+.. .|-.++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666663221 2344556666666666654 11 22222333333332 234556666666777777777777776
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 040580 205 TAYGRLKRS-RHLIDKEGIRAVSFTYLKERKFFMLGEFLRD 244 (412)
Q Consensus 205 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 244 (412)
++++..... +...|...|..+|......|+..-+..++++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 666665443 3344555555555555555555544444443
No 280
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.89 E-value=0.77 Score=32.04 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHH
Q 040580 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316 (412)
Q Consensus 271 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 316 (412)
-++.+-++.+....+.|+.....+.++||.+.+++..|.++++-.+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555555555443
No 281
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.75 E-value=9 Score=32.18 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcC---CCCcHhHHHHHHHHHHccCChhHHHH
Q 040580 257 WNLLLLSYAGNFKMKSLQREFMRMSEAG---FHPDLTTFNIRAVAFSRMSMFWDLHL 310 (412)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~ 310 (412)
|-..|-.|.-..++..|...++.-.+.+ -.-+..+...||.+|-. |+.+++..
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~k 248 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIKK 248 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHHH
Confidence 4444445555556666666666533221 01234455556665543 44544443
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.69 E-value=0.67 Score=25.74 Aligned_cols=22 Identities=23% Similarity=0.153 Sum_probs=9.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 040580 83 CALMLCYANNGFVLEAQVVWEE 104 (412)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~ 104 (412)
+.|...|.+.|++++|.++|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.68 E-value=0.61 Score=25.89 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=12.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 040580 117 LSDLMDAYGRIGCFNEIISIIDQ 139 (412)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~ 139 (412)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 284
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.44 E-value=8.7 Score=31.48 Aligned_cols=225 Identities=14% Similarity=0.011 Sum_probs=146.1
Q ss_pred CCChhHHHHHHHHHHhcCCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHccCCHHHHH
Q 040580 57 KKKPHLAHQLVNTVKSEGLL-PDNSTLCALMLCYANNGFVLEAQVVWEELLSS-SFVLSVQVLSDLMDAYGRIGCFNEII 134 (412)
Q Consensus 57 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~ 134 (412)
.+....+...+......... .....+......+...+++..+...+...... ........+..+...+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34455566666665554322 13566777777788888888888887777652 23555667777777777788888888
Q ss_pred HHHHHHhhcCCCCCHHhHHHHHH-HHHhcCChHHHHHHHHHHHHCCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040580 135 SIIDQVSCRNADLLPEVYSRAIS-CFGKQGQLELMENTLKEMVSRGF--SVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211 (412)
Q Consensus 135 ~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 211 (412)
+.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888876543222 122333333 67888888888888888855221 1123334444444667788888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 212 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
..........+..+...+...++++++...+.......+. ....+..+...+...+..+.+...+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6542224667777778888888888888888876554443 1234444444444667788888888887754
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.39 E-value=10 Score=32.14 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=39.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhccccchHHHHHHhccC
Q 040580 294 IRAVAFSRMSMFWDLHLSLEHMKHE--SVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNL 352 (412)
Q Consensus 294 ~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (412)
.+.+-|.+.|.+..|..-+++|.+. .-.-....+-.+..+|.+.|-.++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3555678888888888888888765 1112234555667778888888888777766643
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.00 E-value=0.41 Score=26.25 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=11.6
Q ss_pred CcCHHHHHHHHHHHHccCCHHHH
Q 040580 111 VLSVQVLSDLMDAYGRIGCFNEI 133 (412)
Q Consensus 111 ~~~~~~~~~li~~~~~~~~~~~a 133 (412)
|-|...|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33445555555555555555544
No 287
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.98 E-value=0.97 Score=36.59 Aligned_cols=76 Identities=9% Similarity=0.029 Sum_probs=53.0
Q ss_pred HhccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhcCCcccHHHHHHHhcc-------CchHHHHHHHHHHHHcCcccc
Q 040580 335 LDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKR-------QRKWTYRKLIAVYLKKQLRRN 406 (412)
Q Consensus 335 ~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~ 406 (412)
.+.|+- .|.+.|-.+ ..+.--+...--.|-..|.+.+..++..++.+... .|+..+.+|.+.|.+.|+++.
T Consensus 118 sr~~d~-~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGDQ-EALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCcH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 344544 566666666 33333344444445555677888888888776432 689999999999999999999
Q ss_pred ccccc
Q 040580 407 QIFWN 411 (412)
Q Consensus 407 a~~w~ 411 (412)
|.+|-
T Consensus 197 AYiwa 201 (203)
T PF11207_consen 197 AYIWA 201 (203)
T ss_pred hhhhe
Confidence 99994
No 288
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.87 E-value=15 Score=33.40 Aligned_cols=172 Identities=8% Similarity=-0.001 Sum_probs=90.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---H-----
Q 040580 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY--SRFGSLTEMETAYGRLKRSRHLIDKEGIRAV---S----- 226 (412)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---i----- 226 (412)
.++...|+.++|.++--...+.. + ...+...+++. --.++.+.+...|++-.+.+ |+...-... .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 44556777887777666655531 1 22333344332 24566777777777766543 333221111 1
Q ss_pred -----HHHHhcccHHHHHHHHHHHh---cCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-HhHHHHHHH
Q 040580 227 -----FTYLKERKFFMLGEFLRDVG---LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD-LTTFNIRAV 297 (412)
Q Consensus 227 -----~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~ 297 (412)
.-..+.|.+.+|.+.+.+.- .....++...|-.......+.|+..+|+.--++.... .|. ...|-.-..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~ 329 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRAN 329 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHH
Confidence 12345677888888877632 2233345566666677777788888887766665532 111 112222222
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHH
Q 040580 298 AFSRMSMFWDLHLSLEHMKHESVGP-DLVTYGCVVDAYL 335 (412)
Q Consensus 298 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~ 335 (412)
++.-.++|++|.+-++...+..-.+ ...++.....++-
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 3444566777777776655432222 2344444444443
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.79 E-value=0.61 Score=25.57 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=24.8
Q ss_pred HHhccCchHHHHHHHHHHHHcCcccccc
Q 040580 381 LEFKRQRKWTYRKLIAVYLKKQLRRNQI 408 (412)
Q Consensus 381 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 408 (412)
-+..|.|+..|..++..|...|++++|+
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4567789999999999999999999884
No 290
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.76 E-value=13 Score=37.08 Aligned_cols=190 Identities=6% Similarity=0.034 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhcccHHHHHHHHHH-HhcCCCCcchHHHHHH
Q 040580 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSF----TYLKERKFFMLGEFLRD-VGLGRKDLGNLLWNLL 260 (412)
Q Consensus 186 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l 260 (412)
+...-+....+...++.|..+-+. .+ .+..+...+.. -+.+.|++++|...+-+ ++...+ ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-------s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-------SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-------HHH
Confidence 345567777777778877776544 23 23344444444 34457888888876654 332222 345
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcccc
Q 040580 261 LLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340 (412)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 340 (412)
|.-|....+...-...++.+.+.|+. +...-+.|+.+|.+.++.++..++.+... .|... .-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChH
Confidence 66777777777777888888888754 45555678888999888888777766533 33321 1234456666666666
Q ss_pred chHHHHHHhccCCCCCCcccHHHHHHH-Hhc-CCcccHHHHHHHhccCc-hHHHHHHHHHHH
Q 040580 341 RNLDFGLSKMNLDDSPVVSTDPYVFEA-FGK-GDFHSSSEAFLEFKRQR-KWTYRKLIAVYL 399 (412)
Q Consensus 341 ~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~-~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~ 399 (412)
++|..+-...... + . ++.. +-. +++.+|.+.+..+.+++ ..+.+..+..+.
T Consensus 480 ~~a~~LA~k~~~h--e-----~-vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll 533 (933)
T KOG2114|consen 480 DEAELLATKFKKH--E-----W-VLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILL 533 (933)
T ss_pred HHHHHHHHHhccC--H-----H-HHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 6666655554321 1 1 2222 333 88999999988887744 333444444443
No 291
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.72 E-value=3.7 Score=38.96 Aligned_cols=151 Identities=13% Similarity=-0.024 Sum_probs=94.3
Q ss_pred cCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 040580 24 THPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103 (412)
Q Consensus 24 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 103 (412)
.-.|+++.|..++..++++. -+.+.+.+.+.|-.++|+++- +|+.-- .....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k~~---rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKEI---RTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCchhh---hhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHH
Confidence 34678888888777776433 355666777777777776543 222211 122346677777776654
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040580 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183 (412)
Q Consensus 104 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 183 (412)
+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. +
T Consensus 662 e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N 725 (794)
T KOG0276|consen 662 EAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N 725 (794)
T ss_pred hhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c
Confidence 432 455688888888888888888888876642 455666666777776665555556665532 2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040580 184 SATGNAFIIYYSRFGSLTEMETAYGRL 210 (412)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~a~~~~~~~ 210 (412)
...-++...|+++++.+++..-
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHhc
Confidence 2233455677888777766443
No 292
>PRK11906 transcriptional regulator; Provisional
Probab=89.57 E-value=18 Score=33.69 Aligned_cols=142 Identities=13% Similarity=-0.057 Sum_probs=92.4
Q ss_pred ChHHHHHHHHHhh---ccC---hhhHHHHHHHHh---------cCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 040580 28 NGDLARKIIRYRK---QEG---FVDCASLVEDLG---------RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92 (412)
Q Consensus 28 ~~~~A~~~~~~~~---~~~---~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 92 (412)
..+.|..+|.+.. +-| ...|..+..++. ......+|.++-+...+.+ +-|+.....+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3557888898877 433 333333322221 1234566777777777765 45788888888888888
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH---hHHHHHHHHHhcCChHHHH
Q 040580 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE---VYSRAISCFGKQGQLELME 169 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~ 169 (412)
++.+.+..+|++....+ +-...+|....-.+.-+|+.++|.+.+++..+.+ |... ..-..+..|+..+ .+.|+
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 99999999999999865 3345666666666677899999999999864432 2221 2333344666543 56666
Q ss_pred HHHHH
Q 040580 170 NTLKE 174 (412)
Q Consensus 170 ~~~~~ 174 (412)
.++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 66543
No 293
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=89.21 E-value=8.4 Score=29.55 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC---C--CCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHH
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSRG---F--SVDSATGNAFIIYYSRFGS-LTEMETAYGRLKRSRHLIDKEGIRA 224 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~--~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (412)
..|.++......+++...+.+++.+..-. + ..+...|.+++.+.++..- --.+..+|..|++.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34445555555555555555555542210 0 1234456666666655544 3345566666666666666666666
Q ss_pred HHHHHHh
Q 040580 225 VSFTYLK 231 (412)
Q Consensus 225 li~~~~~ 231 (412)
+|.++.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 6666554
No 294
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.18 E-value=15 Score=31.14 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=28.7
Q ss_pred hcCCChhHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040580 55 GRKKKPHLAHQLVNTVKSEGL--LPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107 (412)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (412)
.+.|++++|.+.|+.+..+.. +-...+.-.++.++-+.++++.|....++..+
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 355666666666666654321 11233444455555566666666666666555
No 295
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.64 E-value=17 Score=31.08 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHH-HcCCCCcHhHHHHHHHH-----HHccCChhHHHH-HHHHHHh---CCCCCCH
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMS-EAGFHPDLTTFNIRAVA-----FSRMSMFWDLHL-SLEHMKH---ESVGPDL 324 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~-----~~~~g~~~~a~~-~~~~m~~---~g~~p~~ 324 (412)
..|..=|..|....+-.+...++++.. -....|.+.... +|+- ..+.|++++|.. +|+..+. .| .|..
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRR 269 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRR 269 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-Ccch
Confidence 456666777777777666666776654 223345544443 2332 345666766653 3333332 23 2332
Q ss_pred hh---HHHHHHHHHhccccchHHHHHHh--c-cCCCCCCcccHHHHHHHHhcCCcccHHHHHHH
Q 040580 325 VT---YGCVVDAYLDKRLGRNLDFGLSK--M-NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382 (412)
Q Consensus 325 ~~---~~~li~~~~~~~~~~~a~~~~~~--m-~~~~~p~~~~~~~li~~~~~~~~~~a~~~~~~ 382 (412)
.| |-.|...+.+.|--. |+. . .....|.....+.++.+|.+.+..+-.+++..
T Consensus 270 ttCLKYLVLANMLmkS~iNP-----FDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 270 TTCLKYLVLANMLMKSGINP-----FDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILKS 328 (440)
T ss_pred hHHHHHHHHHHHHHHcCCCC-----CcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 22 223333343333110 111 1 22334555556677777777777666665554
No 296
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.34 E-value=23 Score=32.33 Aligned_cols=151 Identities=14% Similarity=-0.011 Sum_probs=97.1
Q ss_pred cccCCCChHHHHHHHHHhhccCh-hhHHHHHHHHh--cCCChhHHHHHHHHHHhcCCCCCHHhHHHH-------------
Q 040580 22 HQTHPKNGDLARKIIRYRKQEGF-VDCASLVEDLG--RKKKPHLAHQLVNTVKSEGLLPDNSTLCAL------------- 85 (412)
Q Consensus 22 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l------------- 85 (412)
++.-.|+.++|.+.--.+.+-|. ..+...++..+ -.++.+.|+.-|++.... .|+...-..+
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhh
Confidence 45566777777777666555433 33444444332 356778888888877764 3444322221
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC---CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH---hHHHHHHHH
Q 040580 86 MLCYANNGFVLEAQVVWEELLSSS---FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE---VYSRAISCF 159 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~ 159 (412)
..-..+.|++..|.+.|.+.+..+ ..|++..|-....+..+.|+..+|+.--++... +|+. .|-.-..++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCH 331 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHH
Confidence 123356788999999998888743 456677788888888888999988887776643 3343 222333455
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 040580 160 GKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~ 178 (412)
...++|++|.+-|+...+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5668888888888877664
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.28 E-value=7.6 Score=31.62 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=61.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhc---CCCCCHHhHHHHHHHHHhcCCh
Q 040580 89 YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR---NADLLPEVYSRAISCFGKQGQL 165 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~ 165 (412)
..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++....+. +-.++|+.+..|.+.+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 678888888888876677888888888777 56888898888876543 3367899999999999999999
Q ss_pred HHHH
Q 040580 166 ELME 169 (412)
Q Consensus 166 ~~a~ 169 (412)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9875
No 298
>PRK09687 putative lyase; Provisional
Probab=87.03 E-value=20 Score=31.32 Aligned_cols=182 Identities=10% Similarity=-0.043 Sum_probs=80.2
Q ss_pred HhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh----HHHHHHHHHHHhCCCCcC
Q 040580 38 YRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV----LEAQVVWEELLSSSFVLS 113 (412)
Q Consensus 38 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~~~~~ 113 (412)
.+..+|.......+.++...|. +++...+..+... +|...=...+.++++.|+. +++...+..+... .|+
T Consensus 31 ~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d 104 (280)
T PRK09687 31 LLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKS 104 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCC
Confidence 3344555566666666666654 3344444444332 3444444455555555543 3455555544322 345
Q ss_pred HHHHHHHHHHHHccCCH-----HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH
Q 040580 114 VQVLSDLMDAYGRIGCF-----NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN 188 (412)
Q Consensus 114 ~~~~~~li~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 188 (412)
..+-...+.+++..+.. ..+...+.... ..+++.+--..+.++++.++ +.++..+-.+.+. +|...-.
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~ 177 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRN 177 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHH
Confidence 55555555555444321 11222222221 12233444455555555554 3344444444442 3333444
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccH
Q 040580 189 AFIIYYSRFG-SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235 (412)
Q Consensus 189 ~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (412)
..+.++++.+ +.+.+...+..+.. .++..+-...+.++++.++.
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~ 222 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK 222 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh
Confidence 4444444432 12234444333332 23444555555555555543
No 299
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.70 E-value=28 Score=32.69 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 040580 189 AFIIYYSRFGSLTEMETAYGRLKRSRHL-IDKEGIRAVSFTYLKERKFFMLGEFLRDV 245 (412)
Q Consensus 189 ~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 245 (412)
.+..++-+.|+.++|.+.+++|.+.... -...+...|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444555667777777777777654322 23345666777777777777777776664
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.44 E-value=20 Score=30.68 Aligned_cols=235 Identities=13% Similarity=0.053 Sum_probs=142.2
Q ss_pred CCCChHHHHHHHHHhhcc-------ChhhHHHHHHHHhcCCChhHHHHHHHHHHhc---CC--CCCHHhHHHHHHHHHhc
Q 040580 25 HPKNGDLARKIIRYRKQE-------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSE---GL--LPDNSTLCALMLCYANN 92 (412)
Q Consensus 25 ~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~--~p~~~~~~~ll~~~~~~ 92 (412)
+...+++|+.-|++..+- ...+...+|....+.+++++....+.+|... .+ .-+..+.|+++.-.+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 344788999999887642 4455667888899999999999999888531 12 23456778888877777
Q ss_pred CChHHHHHHHHHHHhC-----CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC-----------CCCHHhHHHHH
Q 040580 93 GFVLEAQVVWEELLSS-----SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA-----------DLLPEVYSRAI 156 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~~~~~~~~~li 156 (412)
.+.+....+|+.-++. +-..--.|=..|...|...+++....+++.++.++.. ..-...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 7777777776654321 1111122335677888888888888888888864321 11123788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHH-----HhcCCHHHHHH-HHHHHH---hCCCCCCH--HHHHH
Q 040580 157 SCFGKQGQLELMENTLKEMVSR-GFSVDSATGNAFIIYY-----SRFGSLTEMET-AYGRLK---RSRHLIDK--EGIRA 224 (412)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~-----~~~g~~~~a~~-~~~~~~---~~~~~~~~--~~~~~ 224 (412)
+.|....+-.+...++++...- ...|.+.... +|+-| .+.|++++|.. +|+... ++|.+-.. --|-.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 9999888888888888876432 2234443333 44444 35677777653 333333 34432222 22444
Q ss_pred HHHHHHhccc----HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC
Q 040580 225 VSFTYLKERK----FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267 (412)
Q Consensus 225 li~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 267 (412)
|...+.++|- -.+| ..-..+|...+.+.|+.+|-.+
T Consensus 278 LANMLmkS~iNPFDsQEA-------KPyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEA-------KPYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHcCCCCCccccc-------CCCCCCHHHHHHHHHHHHHhcc
Confidence 4555555431 1111 1112234456777788877554
No 301
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.07 E-value=22 Score=30.84 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcc--ChhhHHHHHHHHhcCCChhHHHHHHHH
Q 040580 30 DLARKIIRYRKQE--GFVDCASLVEDLGRKKKPHLAHQLVNT 69 (412)
Q Consensus 30 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 69 (412)
.+|+++|--+.+. -.++-+.++..+-...+..+|...|..
T Consensus 150 ~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 150 RKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hHHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHHHH
Confidence 4778888777654 355566777778777777777766654
No 302
>PRK09687 putative lyase; Provisional
Probab=85.84 E-value=23 Score=30.92 Aligned_cols=197 Identities=9% Similarity=-0.098 Sum_probs=114.9
Q ss_pred ccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCCh----hHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh-
Q 040580 21 SHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKP----HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV- 95 (412)
Q Consensus 21 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~- 95 (412)
..+.+.|..+....+..-...+|...-...+.++++.|+. .++..++..+... .|+...-...+.++...+..
T Consensus 45 ~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~ 122 (280)
T PRK09687 45 RVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKN 122 (280)
T ss_pred HHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccc
Confidence 3344444433333333323345666666777788888764 4677777776443 45666666666666655421
Q ss_pred ----HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC-ChHHHHH
Q 040580 96 ----LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG-QLELMEN 170 (412)
Q Consensus 96 ----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~ 170 (412)
..+...+..... .++..+-...+.++++.++. .+...+-.+.. .+++.+-...+.++.+.+ +...+..
T Consensus 123 ~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~ 195 (280)
T PRK09687 123 PLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIRE 195 (280)
T ss_pred cccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHH
Confidence 223333333332 45677777888888888875 45555555543 355566667777777653 2456667
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccH
Q 040580 171 TLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235 (412)
Q Consensus 171 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (412)
.+..+.. .++..+-...+.++++.|+.. +...+-...+.+ + .....+.+++..|+.
T Consensus 196 ~L~~~L~---D~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 196 AFVAMLQ---DKNEEIRIEAIIGLALRKDKR-VLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHHHhc---CCChHHHHHHHHHHHccCChh-HHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 7766664 357777888889999998854 444444444433 2 223445555555543
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.68 E-value=2.3 Score=22.92 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=9.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 040580 117 LSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
|..+..+|...|++++|...|++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Confidence 334444444444444444444443
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.64 E-value=2.2 Score=24.21 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=12.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
+++.|...|...|++++|.+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4445555555555555555555444
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.28 E-value=2.9 Score=22.51 Aligned_cols=29 Identities=14% Similarity=-0.058 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35666666677777777777777666643
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.16 E-value=28 Score=31.32 Aligned_cols=63 Identities=8% Similarity=-0.114 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC---cHhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP---DLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
.+|..+...+-+.|+++.|...+.++...+..+ .....-.-....-..|+..+|...+++..+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666666666655432111 122222334444555666666666655544
No 307
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.80 E-value=16 Score=28.10 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-----CcCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 040580 83 CALMLCYANNGFVLEAQVVWEELLSSSF-----VLSVQVLSDLMDAYGRIGC-FNEIISIIDQVSCRNADLLPEVYSRAI 156 (412)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (412)
|.++.-.+..++.....++++.+..... ..+..+|++++++.++..- ---+..+|.-|++.+..+++.-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444455555444444422100 1223344444444433333 222344444444444444444444444
Q ss_pred HHHHh
Q 040580 157 SCFGK 161 (412)
Q Consensus 157 ~~~~~ 161 (412)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 44443
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.62 E-value=2.8 Score=23.73 Aligned_cols=29 Identities=34% Similarity=0.302 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLS 107 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (412)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677888888888888888888887764
No 309
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.44 E-value=26 Score=30.37 Aligned_cols=117 Identities=7% Similarity=-0.019 Sum_probs=78.0
Q ss_pred CChHHHHHHHHHHHH-CCCCCChHHHHHHHHHHHh-cC-CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcccHHHH
Q 040580 163 GQLELMENTLKEMVS-RGFSVDSATGNAFIIYYSR-FG-SLTEMETAYGRLKRS-RHLIDKEGIRAVSFTYLKERKFFML 238 (412)
Q Consensus 163 g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a 238 (412)
..+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+.+... |-.++..+...++..+++.+++.+.
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345667777764322 2344577788888887765 22 333334444444433 4567788888888999999999988
Q ss_pred HHHHHHHhcC-CCCcchHHHHHHHHHHhcCCChHHHHHHHHH
Q 040580 239 GEFLRDVGLG-RKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279 (412)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 279 (412)
.+++...... .+..|...|..+|..-...|+..-...+..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8888875443 4555668888888888888887666555443
No 310
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.05 E-value=17 Score=31.19 Aligned_cols=88 Identities=11% Similarity=0.039 Sum_probs=52.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 040580 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK--- 231 (412)
Q Consensus 155 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 231 (412)
=|++++..++|.+++...-+.-+.--+........-|-.|.+.+.+..+.++-....+..-.-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36777777777777766555433211122334444555677778877777777666654333333446666666554
Q ss_pred --cccHHHHHHHH
Q 040580 232 --ERKFFMLGEFL 242 (412)
Q Consensus 232 --~~~~~~a~~~~ 242 (412)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 47777777766
No 311
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.05 E-value=10 Score=31.28 Aligned_cols=52 Identities=6% Similarity=0.023 Sum_probs=23.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040580 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 138 (412)
++.+.+.+.+.+++...++-++.. +.|..+-..++..++-.|++++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 333444444444444444444432 3334444444555555555555544444
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.84 E-value=19 Score=28.20 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=25.0
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCCHH---hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 125 GRIGCFNEIISIIDQVSCRNADLLPE---VYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
.+.++.+++..+++.+..- .|... ++.. ..+...|+|.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 3445666666666655432 22222 2222 2345566666666666665554
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.60 E-value=18 Score=27.85 Aligned_cols=50 Identities=8% Similarity=0.020 Sum_probs=29.6
Q ss_pred cccHHHHHHHHHHHhcCCCCc-chHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 232 ERKFFMLGEFLRDVGLGRKDL-GNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
..+.+++..++..+..-.|+. ...++. ...+...|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 456666666666665444432 112232 33456678888888888887764
No 314
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.08 E-value=16 Score=31.37 Aligned_cols=91 Identities=7% Similarity=-0.126 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc
Q 040580 187 GNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266 (412)
Q Consensus 187 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 266 (412)
...=|.+++..|++.++....-+--+.--+.-+.+...-|-.|.|.+.+..+.++-+..-..+.+-+..-|..+...|..
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 33457888899999888776555443332334556666777888888888888877776555554445667777776665
Q ss_pred -----CCChHHHHHHH
Q 040580 267 -----NFKMKSLQREF 277 (412)
Q Consensus 267 -----~g~~~~a~~~~ 277 (412)
.|.+++|.++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 48888887765
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.60 E-value=4.3 Score=21.65 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSE 282 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (412)
.|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455555666666666666666666554
No 316
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.17 E-value=55 Score=32.39 Aligned_cols=213 Identities=9% Similarity=0.039 Sum_probs=94.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCChH---HHH
Q 040580 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ-------LELMENTLKEMVSRGFSVDSA---TGN 188 (412)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~---~~~ 188 (412)
.+|-.|.|+|++++|.++.++.... .......+...+..|....+ -++...-|++..+.....|+. .|.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 3556788999999999999666543 34444577788888876533 235555566665543322432 232
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHhcCCCCcchHH
Q 040580 189 AFIIYYSRFG-SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE-----------RKFFMLGEFLRDVGLGRKDLGNLL 256 (412)
Q Consensus 189 ~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~ 256 (412)
+|..|--.. .... +..+..-|-.+=-.+.+. -.+++..+.+.+.+....+. ...
T Consensus 195 -ilg~cD~~~~~~~~------------V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~ 260 (613)
T PF04097_consen 195 -ILGRCDLSRRHLPE------------VARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSN 260 (613)
T ss_dssp -HHHT--CCC-S-TT------------C--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT----
T ss_pred -HHhcCCccccchHH------------HhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chh
Confidence 222221111 1101 011111111111111111 12344444444555554443 111
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHh-CCCCCCHhhHHHHHHHHH
Q 040580 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH-ESVGPDLVTYGCVVDAYL 335 (412)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~ 335 (412)
.-.....+.-.|++|.|++.+.+ ..+...+.+.+.+.+.-|.-.+-.+... ..+.. ..-.|....+..||..|+
T Consensus 261 p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 261 PLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYT 335 (613)
T ss_dssp ---HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHH
Confidence 22334566778999999998877 2333556667766665543322222211 22221 111122266788888888
Q ss_pred h---ccccchHHHHHHhcc
Q 040580 336 D---KRLGRNLDFGLSKMN 351 (412)
Q Consensus 336 ~---~~~~~~a~~~~~~m~ 351 (412)
+ ..++.+|.+++-.+.
T Consensus 336 ~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 336 RSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HTTTTT-HHHHHHHHHGGG
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6 567778888887773
No 317
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.60 E-value=45 Score=30.98 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=27.3
Q ss_pred hcCCCCCHHh--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHccCCHHHHHHHHH
Q 040580 72 SEGLLPDNST--LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQ--VLSDLMDAYGRIGCFNEIISIID 138 (412)
Q Consensus 72 ~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~ 138 (412)
+.|..|+... -.+.+..++..|+.+ +.+.+.+.|..|+.. ...+-+...++.|+.+.+..+++
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 4455554322 223344445555544 333344444433321 11223444455666665544443
No 318
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.99 E-value=13 Score=30.67 Aligned_cols=75 Identities=7% Similarity=-0.095 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHc--CCCCcHhHHHHHHH
Q 040580 222 IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA--GFHPDLTTFNIRAV 297 (412)
Q Consensus 222 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~ 297 (412)
.+..+..+.+.+.+.++....++-....+. |...-..+++.||-.|++++|..-++-.-+. ...+-..+|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344455566666666666665543222221 3345556666666777777665544433321 12333445555554
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.84 E-value=14 Score=34.29 Aligned_cols=117 Identities=9% Similarity=-0.008 Sum_probs=74.8
Q ss_pred HccCCHHHHH-HHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 040580 125 GRIGCFNEII-SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203 (412)
Q Consensus 125 ~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 203 (412)
...|++-.|- +++..++. .+.+|+.....-..+...|+++.+...+....+. +.....+..++++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~--~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN--QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHh--CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3456655554 34444432 3445555444455567789999998888776553 334667888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 040580 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245 (412)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 245 (412)
...-.-|....+. ++.+.......--..|-++++.-.|+++
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHH
Confidence 9998888876654 3333322222223345677777777765
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.72 E-value=6 Score=21.03 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=5.6
Q ss_pred HHhcCChHHHHHHHHH
Q 040580 89 YANNGFVLEAQVVWEE 104 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~ 104 (412)
+...|++++|.+.|++
T Consensus 11 ~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 11 YYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHTT-HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 3333333333333333
No 321
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.20 E-value=67 Score=31.49 Aligned_cols=59 Identities=8% Similarity=-0.134 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHH
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 316 (412)
.-.-++..|.+.|-.+.|..+.+.+-..-+ ...-|..-+.-+.++|+...+..+.+.+.
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455556666666666666555543311 12334445555555555555444444433
No 322
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.89 E-value=6.1 Score=29.26 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHH
Q 040580 307 DLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVF 365 (412)
Q Consensus 307 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li 365 (412)
+..+-+..+....+-|++....+-+++|.+..++..|.++++-++....+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34444455555556666666666666666666666666666655443333333343333
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.72 E-value=26 Score=33.71 Aligned_cols=147 Identities=14% Similarity=0.040 Sum_probs=89.9
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHH
Q 040580 127 IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA-TGNAFIIYYSRFGSLTEMET 205 (412)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~ 205 (412)
.|+++.|..++..+. .+.-+.++.-+.+.|-.++|+++ .+|.. -|. ...+.|+++.|.+
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe----lal~lgrl~iA~~ 658 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQRFE----LALKLGRLDIAFD 658 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhhhh----hhhhcCcHHHHHH
Confidence 355555554443332 23455566666677766666553 23332 222 2346678888877
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 040580 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF 285 (412)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 285 (412)
+..+.. +..-|..|-++..+.+++..|.+.|... .-|..|+-.+...|+.+....+-...++.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a---------~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA---------RDLGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh---------cchhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 765542 5667888888888888888888877753 4566777777777777666555555555542
Q ss_pred CCcHhHHHHHHHHHHccCChhHHHHHHHH
Q 040580 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEH 314 (412)
Q Consensus 286 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (412)
.|.-..++...|+++++.+++.+
T Consensus 724 ------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 ------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ------cchHHHHHHHcCCHHHHHHHHHh
Confidence 23334456667888887777654
No 324
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.50 E-value=17 Score=27.04 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=20.0
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 102 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
+..+...++.|+..+...-+++|-+.+|+..|.++|+-++
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444445555555555555555555555555555444
No 325
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.00 E-value=76 Score=31.46 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 040580 48 ASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92 (412)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 92 (412)
-.+|-.|.+.|++++|.++..+.... .......|...+..+...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 35566667777777777777444432 344445556666666554
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.90 E-value=6.7 Score=20.91 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=15.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
+|..+...|.+.|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555556666666666666666554
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.76 E-value=3.7 Score=20.69 Aligned_cols=15 Identities=20% Similarity=-0.004 Sum_probs=5.8
Q ss_pred HHHHccCCHHHHHHH
Q 040580 122 DAYGRIGCFNEIISI 136 (412)
Q Consensus 122 ~~~~~~~~~~~a~~~ 136 (412)
..+...|++++|.++
T Consensus 9 ~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 9 RALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHcCCHHHHHHH
Confidence 333333333333333
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.71 E-value=3.6 Score=21.74 Aligned_cols=23 Identities=13% Similarity=0.015 Sum_probs=12.0
Q ss_pred HHHHhcCCChHHHHHHHHHHHHc
Q 040580 261 LLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
..++.+.|+.++|...|+++.+.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 34444455555555555555543
No 329
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.34 E-value=16 Score=25.97 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHH
Q 040580 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348 (412)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 348 (412)
..++|..+-+-+...+-. ....--+-+.++.+.|++++|..+.+.+ ..||...|-+| +-.|.|....+..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHH
Confidence 456666666655543211 2222224455677888888888776654 47888888766 3446777777777777
Q ss_pred hccCCCCCCcccH
Q 040580 349 KMNLDDSPVVSTD 361 (412)
Q Consensus 349 ~m~~~~~p~~~~~ 361 (412)
.|.....|....|
T Consensus 93 rla~sg~p~lq~F 105 (115)
T TIGR02508 93 RLAASGDPRLQTF 105 (115)
T ss_pred HHHhCCCHHHHHH
Confidence 7744455655444
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.13 E-value=7 Score=22.93 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 040580 190 FIIYYSRFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 190 li~~~~~~g~~~~a~~~~~~~~~~~ 214 (412)
+..+|...|+.+.|..+++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4456666666666666666666443
No 331
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.15 E-value=63 Score=29.06 Aligned_cols=61 Identities=13% Similarity=-0.057 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 040580 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI---DKEGIRAVSFTYLKERKFFMLGEFLRD 244 (412)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ 244 (412)
..++..+...+-+.|+++.|...+..+...+... .+.+.-.-...+-..|+..+|...++.
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455556666666666666666666665533111 223333334444444555555555444
No 332
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.61 E-value=1e+02 Score=31.34 Aligned_cols=225 Identities=10% Similarity=-0.068 Sum_probs=117.2
Q ss_pred HccCCHHHHHHHHHHHhhcCCCC----CHH---hHHHHH-HHHHhcCChHHHHHHHHHHHHC----CCCCChHHHHHHHH
Q 040580 125 GRIGCFNEIISIIDQVSCRNADL----LPE---VYSRAI-SCFGKQGQLELMENTLKEMVSR----GFSVDSATGNAFII 192 (412)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~----~~~---~~~~li-~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~ 192 (412)
....++++|..+..+....-..| ..+ .++.+- ......|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35578888888888775432221 222 444442 2234568889998888776553 22345566777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHH--HHHhcccH--HHHHHHHHHHh---cCCCC---cchHHHHH
Q 040580 193 YYSRFGSLTEMETAYGRLKRSRHLIDKE---GIRAVSF--TYLKERKF--FMLGEFLRDVG---LGRKD---LGNLLWNL 259 (412)
Q Consensus 193 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~--~~~~~~~~--~~a~~~~~~~~---~~~~~---~~~~~~~~ 259 (412)
+..-.|++++|..+..+..+..-.-+.. .+..+.. .+...|.. .+.+..+.... ..... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998887766543222332 2333322 23334522 22222222221 11111 11244555
Q ss_pred HHHHHhcC-CChHHHHHHHHHHHHcCCCCcHhHHH--HHHHHHHccCChhHHHHHHHHHHhCC----CCCCHhhHHHHHH
Q 040580 260 LLLSYAGN-FKMKSLQREFMRMSEAGFHPDLTTFN--IRAVAFSRMSMFWDLHLSLEHMKHES----VGPDLVTYGCVVD 332 (412)
Q Consensus 260 li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li~ 332 (412)
+..++.+. +...++..-++-.......|-..... .|+......|+.++|...++++.... ..++...-...++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555552 22222222222222222222222222 56677778999999999998887632 2334333334444
Q ss_pred HHHh--ccccchHHHHHHh
Q 040580 333 AYLD--KRLGRNLDFGLSK 349 (412)
Q Consensus 333 ~~~~--~~~~~~a~~~~~~ 349 (412)
.-.. .|+...+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 4333 5555555555444
No 333
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.42 E-value=85 Score=30.26 Aligned_cols=133 Identities=12% Similarity=0.106 Sum_probs=90.5
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHh-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNST-LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 121 (412)
+...|+.+|.---...+++.+..+++.+... .|-..- |.....-=.+.|..+.+..+|++-++ |++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 5556777777655555666777777777754 455443 34444444567888889999988876 4677777777776
Q ss_pred HHHHc-cCCHHHHHHHHHHHhhc-CCC-CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 122 DAYGR-IGCFNEIISIIDQVSCR-NAD-LLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 122 ~~~~~-~~~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
..+.. .|+.+...+.|+..... |.. .+...|...|.--..++++.....++++..+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 65554 46777788888877543 211 12237888888888888899999998888774
No 334
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=74.39 E-value=67 Score=29.01 Aligned_cols=221 Identities=9% Similarity=-0.066 Sum_probs=126.6
Q ss_pred cCCCChHHHHHHHHHhhcc------ChhhHHHHHHHHhcCCChhHHHHHHHH----HHhcC-CCCCHHhHHHHHHHHHhc
Q 040580 24 THPKNGDLARKIIRYRKQE------GFVDCASLVEDLGRKKKPHLAHQLVNT----VKSEG-LLPDNSTLCALMLCYANN 92 (412)
Q Consensus 24 ~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g-~~p~~~~~~~ll~~~~~~ 92 (412)
..+.+.++|+..+.....+ -..++..+..+.++.|.+++++..--. ..+.. -..--..|-.+-+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777787777665443 234577777888888887776543211 11110 001123445555555555
Q ss_pred CChHHHHHHHHHHHhC-CCCc---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCC----HHhHHHHHHHHHhcC
Q 040580 93 GFVLEAQVVWEELLSS-SFVL---SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN-ADLL----PEVYSRAISCFGKQG 163 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~----~~~~~~li~~~~~~g 163 (412)
-++.+++.+-..-... |..| --...-++..++...+.++++++.|+....-. -.-| -.++..|-+.|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 5666666655544431 2122 12344557777777888999999998664321 1111 227888889999999
Q ss_pred ChHHHHHHHHHHHH----CCCCCChHHHHHH-----HHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHH
Q 040580 164 QLELMENTLKEMVS----RGFSVDSATGNAF-----IIYYSRFGSLTEMETAYGRLKR----SRHLI-DKEGIRAVSFTY 229 (412)
Q Consensus 164 ~~~~a~~~~~~m~~----~g~~p~~~~~~~l-----i~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~ 229 (412)
++++|.-+.....+ -++.-=..-|..+ .-++-..|++-.|.+.-++..+ .|-++ .......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99998877655432 2332111223332 2344566777777766666543 34332 233455566777
Q ss_pred HhcccHHHHHHHHHH
Q 040580 230 LKERKFFMLGEFLRD 244 (412)
Q Consensus 230 ~~~~~~~~a~~~~~~ 244 (412)
...|+.+.|..-++.
T Consensus 257 R~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcccHhHHHHHHHH
Confidence 788888887777664
No 335
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.22 E-value=12 Score=22.35 Aligned_cols=27 Identities=15% Similarity=0.394 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHH
Q 040580 128 GCFNEIISIIDQVSCRNADLLPEVYSR 154 (412)
Q Consensus 128 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ 154 (412)
|-.+++..++++|.+.|+..++..|..
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 333334444444444444433333333
No 336
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.10 E-value=87 Score=30.21 Aligned_cols=375 Identities=10% Similarity=-0.002 Sum_probs=207.2
Q ss_pred cccccccCCCChHHHHHHHHHhhccChhh---HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HhcC
Q 040580 18 NVPSHQTHPKNGDLARKIIRYRKQEGFVD---CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY-ANNG 93 (412)
Q Consensus 18 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~ 93 (412)
.|+.--......+.++.++..+...=+.. |-.....=.+.|..+.+..+|++-.+ |++.+...|...+.-+ ...|
T Consensus 50 ~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~ 128 (577)
T KOG1258|consen 50 TLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNG 128 (577)
T ss_pred HHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCC
Confidence 34443344445567777777766543322 34444444677888999999998876 4677777776655544 3467
Q ss_pred ChHHHHHHHHHHHhC-CC-CcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH---hc------
Q 040580 94 FVLEAQVVWEELLSS-SF-VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG---KQ------ 162 (412)
Q Consensus 94 ~~~~a~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---~~------ 162 (412)
+.+.....|+..... |. -.+...|...|..-...+++.....++++..+... ..|+..-.-|. ..
T Consensus 129 d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l~~~~~~~l 204 (577)
T KOG1258|consen 129 DPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLLNQNEEKIL 204 (577)
T ss_pred CHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHHhcCChhhh
Confidence 888888888888763 32 23556788888888888999999999998865321 12222221111 11
Q ss_pred CChHHHHHHHHHHHH-------------------CCCCCCh---HHHHHHHHHH-------HhcCCHHHHHHHHHHHHhC
Q 040580 163 GQLELMENTLKEMVS-------------------RGFSVDS---ATGNAFIIYY-------SRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 163 g~~~~a~~~~~~m~~-------------------~g~~p~~---~~~~~li~~~-------~~~g~~~~a~~~~~~~~~~ 213 (412)
...+++.++-..... .-..|.. ...+.+-..+ -..-........|+.-.+.
T Consensus 205 ~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikr 284 (577)
T KOG1258|consen 205 LSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKR 284 (577)
T ss_pred cCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccc
Confidence 122332222221111 0001111 0111111111 1111222222223222221
Q ss_pred ---CCC----CCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCC-
Q 040580 214 ---RHL----IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF- 285 (412)
Q Consensus 214 ---~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~- 285 (412)
.++ ++..+|...+.--.+.|+++.+.-++++...+...-+ ..|--.+.-....|+.+-|..++..-.+--+
T Consensus 285 pYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 285 PYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-EFWIKYARWMESSGDVSLANNVLARACKIHVK 363 (577)
T ss_pred cccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC
Confidence 122 2456788888888899999999999888655444332 3343334333444888888888777665432
Q ss_pred -CCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHhccccchHH---HHHHhccCCCCCCccc
Q 040580 286 -HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY-GCVVDAYLDKRLGRNLD---FGLSKMNLDDSPVVST 360 (412)
Q Consensus 286 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~~~~~~a~---~~~~~m~~~~~p~~~~ 360 (412)
+|....+.+.+ +-..|+++.|..+++.....- |+..-. ..-+....+.|..+.+. +++.....+. -+...
T Consensus 364 ~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~-~~~~i 438 (577)
T KOG1258|consen 364 KTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK-ENNGI 438 (577)
T ss_pred CCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc-cCcch
Confidence 23333333332 234578999999999987653 543221 11233444567776666 4444442222 12222
Q ss_pred HHHHHHH------HhcCCcccHHHHHHHhcc---CchHHHHHHHHHHHHcCc
Q 040580 361 DPYVFEA------FGKGDFHSSSEAFLEFKR---QRKWTYRKLIAVYLKKQL 403 (412)
Q Consensus 361 ~~~li~~------~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 403 (412)
.+.+.-- .++++.+.|..++.++.+ ++...|..+++.....+.
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 2222211 244788888888888766 667778888877766553
No 337
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=73.84 E-value=13 Score=22.25 Aligned_cols=32 Identities=6% Similarity=0.102 Sum_probs=19.5
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 040580 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332 (412)
Q Consensus 301 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 332 (412)
+.|-+.++..++++|.+.|+..+...+..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34555566666666666666666666665543
No 338
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.56 E-value=78 Score=29.41 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=96.1
Q ss_pred cCCCChHHHHHHHHHhhccChh--hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHH--hHHHHHHHHHhcCChHHHH
Q 040580 24 THPKNGDLARKIIRYRKQEGFV--DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS--TLCALMLCYANNGFVLEAQ 99 (412)
Q Consensus 24 ~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~ 99 (412)
++.|+.+.+..+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+.
T Consensus 10 ~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 3567777777777654443221 1233445555667664 444455566655432 1223455666788877765
Q ss_pred HHHHHHHhCCCCcCHH---HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH--hHHHHHHHHHhcCChHHHHHHHHH
Q 040580 100 VVWEELLSSSFVLSVQ---VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKE 174 (412)
Q Consensus 100 ~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~ 174 (412)
.+++ .|...+.. .-.+.+...+..|+.+- ++.+.+.|..++.. .-.+.+...+..|+.+-+..+
T Consensus 86 ~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~i----v~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L--- 154 (413)
T PHA02875 86 ELLD----LGKFADDVFYKDGMTPLHLATILKKLDI----MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL--- 154 (413)
T ss_pred HHHH----cCCcccccccCCCCCHHHHHHHhCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH---
Confidence 5554 33211110 01223344455666654 34444444443322 112334444566776554433
Q ss_pred HHHCCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcccHHHHHHHHH
Q 040580 175 MVSRGFSVD---SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG---IRAVSFTYLKERKFFMLGEFLR 243 (412)
Q Consensus 175 m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~ 243 (412)
.+.|..++ ..-.+.+. ..+..|+.+ +.+.+.+.|..++... ..+++..-+..|+.+-+.-+++
T Consensus 155 -l~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 155 -IDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred -HhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 44454332 22233333 344556654 4455566676665432 1234443445566655554444
No 339
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.03 E-value=87 Score=29.75 Aligned_cols=178 Identities=17% Similarity=0.175 Sum_probs=119.9
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
|-...-+++..+..+.++.-...+-.+|...| -+-..|-.++..|... ..+.-..+|+++.+..+ -|++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44455677888888888888888888888764 4778888899988888 66777888998888753 24444444555
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCC-----HHhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHh
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLL-----PEVYSRAISCFGKQGQLELMENTLKEMVSR-GFSVDSATGNAFIIYYSR 196 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 196 (412)
.|-+ ++...+...|.+...+-++.. ...|..++.-- ..+.+..+.+....+.. |...-.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5544 788888888887765533211 12666665422 34677777777777653 444456677777788888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040580 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFT 228 (412)
Q Consensus 197 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 228 (412)
..++++|.+++..+.+..- .|...-..++.-
T Consensus 218 ~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHDE-KDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHH
Confidence 8999999999987776542 244443444443
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.38 E-value=12 Score=19.82 Aligned_cols=29 Identities=24% Similarity=0.137 Sum_probs=21.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSS 108 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (412)
.+|..+...+...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35666777778888888888888777653
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.86 E-value=11 Score=22.18 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=12.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhh
Q 040580 120 LMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
|..+|.+.|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555543
No 342
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=71.64 E-value=11 Score=32.69 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=28.7
Q ss_pred CCCCHHh-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 040580 75 LLPDNST-LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118 (412)
Q Consensus 75 ~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 118 (412)
+.||..+ |+..|....+.||+++|+.++++..+.|+.--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4455555 4577777777777777777777777777554444443
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.26 E-value=81 Score=29.64 Aligned_cols=85 Identities=9% Similarity=0.034 Sum_probs=42.2
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 040580 125 GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204 (412)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 204 (412)
...|+++.+.+.+...... +..+..+...++....+.|++++|..+-.-|....+. +...........-..|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 4456666666655544321 2233345566666666666666666666666655443 2222222222222334455555
Q ss_pred HHHHHHH
Q 040580 205 TAYGRLK 211 (412)
Q Consensus 205 ~~~~~~~ 211 (412)
..|.++.
T Consensus 412 ~~wk~~~ 418 (831)
T PRK15180 412 HYWKRVL 418 (831)
T ss_pred HHHHHHh
Confidence 5555544
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.82 E-value=1.1e+02 Score=29.93 Aligned_cols=181 Identities=11% Similarity=0.043 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhcCCCCCHHhHH--HHHHH-HHhcCChHHHHHHHHHHHH-------CCCCCChHHHHHHHHHHHhcC-
Q 040580 130 FNEIISIIDQVSCRNADLLPEVYS--RAISC-FGKQGQLELMENTLKEMVS-------RGFSVDSATGNAFIIYYSRFG- 198 (412)
Q Consensus 130 ~~~a~~~~~~m~~~~~~~~~~~~~--~li~~-~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g- 198 (412)
...|.+.++.....|. ..+.... ....+ +....|.+.|+..|+...+ .| ......-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567777777776663 2221111 12233 4566788888888887766 44 2224444555555532
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cccHHHHHHHHHHHhcCCCCcchHHHHH-HHHHH--hcCCCh
Q 040580 199 ----SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK-ERKFFMLGEFLRDVGLGRKDLGNLLWNL-LLLSY--AGNFKM 270 (412)
Q Consensus 199 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~--~~~g~~ 270 (412)
+.+.|..++...-+.|. |+....-..+..... ..+...|.++|......+... ..|.. ++-.. ....+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~--A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL--AIYRLALCYELGLGVERNL 380 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH--HHHHHHHHHHhCCCcCCCH
Confidence 56678888887777773 444444333333333 356678888888766555542 22221 11111 123467
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 040580 271 KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319 (412)
Q Consensus 271 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 319 (412)
+.|..++.+..+.| .|...--...+..+.. +..+.+...+..+...|
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 77888888777776 3332221222333333 55555555444444433
No 345
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.50 E-value=1.1e+02 Score=29.89 Aligned_cols=181 Identities=14% Similarity=-0.005 Sum_probs=112.8
Q ss_pred hHHHHHHHHHhhcc-ChhhHHHHHHH-----HhcCCChhHHHHHHHHHHh-------cCCCCCHHhHHHHHHHHHhcC--
Q 040580 29 GDLARKIIRYRKQE-GFVDCASLVED-----LGRKKKPHLAHQLVNTVKS-------EGLLPDNSTLCALMLCYANNG-- 93 (412)
Q Consensus 29 ~~~A~~~~~~~~~~-~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~-- 93 (412)
...|...++...+. ++..-..+... +...++++.|+..|+...+ .| .+....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777776654 44433333322 3466789999999998876 55 3335666677776643
Q ss_pred ---ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc-cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH--HHhcCChHH
Q 040580 94 ---FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR-IGCFNEIISIIDQVSCRNADLLPEVYSRAISC--FGKQGQLEL 167 (412)
Q Consensus 94 ---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~ 167 (412)
+.+.|..+|...-+.| .|+....-..+..... ..+...|.++|...-..|. +...-+-.++-. ..-..+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHH
Confidence 6677999999988888 5666555444443333 3467899999999987774 222122222211 123457888
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 040580 168 MENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216 (412)
Q Consensus 168 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 216 (412)
|..++++.-+.| .|...--...+..+.. ++.+.+...+..+...|..
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 889998888887 3333333334444444 7777777777777766643
No 346
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.09 E-value=18 Score=24.33 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=19.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCCHHHHH
Q 040580 161 KQGQLELMENTLKEMVSRGFSVDS--ATGNAFIIYYSRFGSLTEME 204 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~ 204 (412)
..++.++|+..|....+.-..|.. .++..++.+++..|++.++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554443222211 33444555555555544443
No 347
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.96 E-value=66 Score=27.11 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=17.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC
Q 040580 193 YYSRFGSLTEMETAYGRLKRSRHLI 217 (412)
Q Consensus 193 ~~~~~g~~~~a~~~~~~~~~~~~~~ 217 (412)
.-+..+++.+|.++|+++.......
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456678888888888887665443
No 348
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=69.79 E-value=81 Score=28.03 Aligned_cols=62 Identities=6% Similarity=-0.048 Sum_probs=25.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040580 148 LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 148 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 212 (412)
+|+.-..++....+.|+.+.-..+++..... ++...-..++.+.+...+.+...++++.+..
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 4444444444444444444433333333332 2334444455555555555544455544444
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.37 E-value=29 Score=27.79 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhc-----CCCCCH-HhHHHHHHHHHhcC----C-------hHHHHHHHHHHHhCC
Q 040580 47 CASLVEDLGRKKKPHLAHQLVNTVKSE-----GLLPDN-STLCALMLCYANNG----F-------VLEAQVVWEELLSSS 109 (412)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~~-~~~~~ll~~~~~~~----~-------~~~a~~~~~~m~~~~ 109 (412)
|...+.-+++.....++.+++++..+. .+.|+- .++..+..++...+ + +++|...|+....
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~-- 108 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD-- 108 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--
Confidence 444555555555444454444444321 245653 55666666655432 2 3333344444443
Q ss_pred CCcCHHHHHHHHHHHH
Q 040580 110 FVLSVQVLSDLMDAYG 125 (412)
Q Consensus 110 ~~~~~~~~~~li~~~~ 125 (412)
..|+..+|+.-+....
T Consensus 109 ~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 109 EDPNNELYRKSLEMAA 124 (186)
T ss_dssp H-TT-HHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHH
Confidence 3577777777666653
No 350
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=69.31 E-value=1.2e+02 Score=29.80 Aligned_cols=181 Identities=10% Similarity=0.030 Sum_probs=92.1
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
....|..+++.+.... .+.-.++++++.. .+ ...+..++.+....|.......+.+.+....+.+ ...-..+..
T Consensus 309 ~~~~f~~lv~~lR~~~-~e~l~~l~~~~~~---~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~ 382 (574)
T smart00638 309 AAAKFLRLVRLLRTLS-EEQLEQLWRQLYE---KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAV 382 (574)
T ss_pred hHHHHHHHHHHHHhCC-HHHHHHHHHHHHh---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHH
Confidence 4446777777665443 5677777777754 11 5677888888888888777777777776655443 222222333
Q ss_pred HH--HccCCHHHHHHHHHHHhhcCCCCCHH-------hHHHHHHHHHhcCCh------HHHHHHHHHHHHCCC-CCChHH
Q 040580 123 AY--GRIGCFNEIISIIDQVSCRNADLLPE-------VYSRAISCFGKQGQL------ELMENTLKEMVSRGF-SVDSAT 186 (412)
Q Consensus 123 ~~--~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~-~p~~~~ 186 (412)
+. .+.-..+-...+++-+........+. +|..++..+|..... ++....+.+...... .-|..-
T Consensus 383 ~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 383 LPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred HHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 22 23334444444444444344444543 444555544444331 333333333322211 113333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040580 187 GNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230 (412)
Q Consensus 187 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 230 (412)
-...|.+++..|.......+-..+. .....+...-...+.++.
T Consensus 463 ~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr 505 (574)
T smart00638 463 IQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALR 505 (574)
T ss_pred eeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHH
Confidence 4456777777777554433333332 222233444444444443
No 351
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.98 E-value=1.3e+02 Score=30.16 Aligned_cols=102 Identities=15% Similarity=0.037 Sum_probs=63.6
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 040580 51 VEDLGRKKKPHLAHQLVNTVKSEGLLP---DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127 (412)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 127 (412)
|+.+.+.+.+++|++..+.-.. ..| -.......|..+...|++++|-...-.|.. -+..-|--.+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 5566677778888877765443 334 234566677777777888888777777764 2455566666666666
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 040580 128 GCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161 (412)
Q Consensus 128 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 161 (412)
++... ++.-++...-..+|..|..++..|..
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 65543 23333333334566778877777766
No 352
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.90 E-value=32 Score=26.56 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=38.8
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Q 040580 170 NTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233 (412)
Q Consensus 170 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 233 (412)
++.+.+.+.|++++.. -..++..+.+.++.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445566677766543 33466666666666778888888877776666655444445444443
No 353
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.89 E-value=70 Score=26.97 Aligned_cols=16 Identities=0% Similarity=0.009 Sum_probs=8.4
Q ss_pred CChHHHHHHHHHHHHc
Q 040580 268 FKMKSLQREFMRMSEA 283 (412)
Q Consensus 268 g~~~~a~~~~~~m~~~ 283 (412)
+++.+|+.+|++....
T Consensus 168 eqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555443
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.68 E-value=22 Score=23.95 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=19.6
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCHH---hHHHHHHHHHhcCChHHHHH
Q 040580 126 RIGCFNEIISIIDQVSCRNADLLPE---VYSRAISCFGKQGQLELMEN 170 (412)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~ 170 (412)
..++.+.|+..|....++-.. .+. ++..++.+++..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544433211 111 44445555555555554443
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.67 E-value=85 Score=27.45 Aligned_cols=40 Identities=8% Similarity=-0.163 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 040580 166 ELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207 (412)
Q Consensus 166 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 207 (412)
.+|+++|.-+....-+ .++-..++.++....+..+|...+
T Consensus 150 ~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~l 189 (361)
T COG3947 150 RKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLL 189 (361)
T ss_pred hHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHH
Confidence 4666666666554211 223334555555555555555444
No 356
>PRK13342 recombination factor protein RarA; Reviewed
Probab=67.41 E-value=1.1e+02 Score=28.60 Aligned_cols=35 Identities=14% Similarity=0.010 Sum_probs=19.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 040580 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197 (412)
Q Consensus 163 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 197 (412)
++.+.|+..+..|.+.|..|....-..++.++-..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 56666666666666666665544444444444333
No 357
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.08 E-value=34 Score=27.85 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=16.1
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 146 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
.|++.+|..++..+...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555554444
No 358
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=64.94 E-value=46 Score=25.69 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=21.6
Q ss_pred HHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 040580 138 DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSAT 186 (412)
Q Consensus 138 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 186 (412)
+.+++.|+++++ --..++..+...++.-.|.++++++.+.+...+..|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 344444444444 222334444444444555555555555444433333
No 359
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=64.70 E-value=51 Score=23.85 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=11.4
Q ss_pred HHHHHHhcccHHHHHHHHHHHhcC
Q 040580 225 VSFTYLKERKFFMLGEFLRDVGLG 248 (412)
Q Consensus 225 li~~~~~~~~~~~a~~~~~~~~~~ 248 (412)
++.-|...++.++|...+.++..+
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHhcCCCHHHHHHHHHHhCCC
Confidence 344455555555555555554333
No 360
>PHA03100 ankyrin repeat protein; Provisional
Probab=63.94 E-value=1.3e+02 Score=28.61 Aligned_cols=6 Identities=17% Similarity=0.014 Sum_probs=2.4
Q ss_pred hcCCCC
Q 040580 72 SEGLLP 77 (412)
Q Consensus 72 ~~g~~p 77 (412)
+.|..|
T Consensus 56 ~~g~~~ 61 (480)
T PHA03100 56 DNGADI 61 (480)
T ss_pred HcCCCC
Confidence 334443
No 361
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=63.91 E-value=67 Score=24.90 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHH---hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 127 IGCFNEIISIIDQVSCRNADLLPE---VYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
.++++++..+++.|.- +.|+.. ++...+ +...|+|++|..+|++..+.
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 4555555555555532 122211 333222 34555666666666665554
No 362
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.87 E-value=80 Score=25.78 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=42.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----HHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc
Q 040580 192 IYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV-----SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266 (412)
Q Consensus 192 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 266 (412)
..+...|++++|...++..... |....+..+ .......|.+|+|...++........ ......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 4455667777777776665532 122222222 22333445556665555543222221 1222223355666
Q ss_pred CCChHHHHHHHHHHHHcC
Q 040580 267 NFKMKSLQREFMRMSEAG 284 (412)
Q Consensus 267 ~g~~~~a~~~~~~m~~~~ 284 (412)
.|+-++|..-|+...+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 666666666666665543
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.65 E-value=51 Score=23.51 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHhcCCCCCHHhHHHH--HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 040580 60 PHLAHQLVNTVKSEGLLPDNSTLCAL--MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137 (412)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 137 (412)
.++|..+-+.+...| +..-...| +..+.+.|++++|..+.+.+ ..||...|-+|.. .+.|..+.+..-+
T Consensus 21 HqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 21 HQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 456666666655443 21222222 33456677777777766555 3677777766644 3566666666666
Q ss_pred HHHhhcC
Q 040580 138 DQVSCRN 144 (412)
Q Consensus 138 ~~m~~~~ 144 (412)
.+|..+|
T Consensus 92 ~rla~sg 98 (115)
T TIGR02508 92 NRLAASG 98 (115)
T ss_pred HHHHhCC
Confidence 6666555
No 364
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=63.62 E-value=24 Score=31.31 Aligned_cols=86 Identities=19% Similarity=0.087 Sum_probs=52.3
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCH
Q 040580 52 EDLGRKKKPHLAHQLVNTVKSEGLLP-DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130 (412)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 130 (412)
.-|.++|++++|+++|..-... .| |+.++..-..+|.+..++..|+.=-+..+..+ ..-+..|+.-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 4567788888888888776653 45 77777777778888887777766555555433 22233344444444444455
Q ss_pred HHHHHHHHHH
Q 040580 131 NEIISIIDQV 140 (412)
Q Consensus 131 ~~a~~~~~~m 140 (412)
.+|.+=++..
T Consensus 182 ~EAKkD~E~v 191 (536)
T KOG4648|consen 182 MEAKKDCETV 191 (536)
T ss_pred HHHHHhHHHH
Confidence 5555444444
No 365
>PRK12356 glutaminase; Reviewed
Probab=63.29 E-value=95 Score=27.62 Aligned_cols=163 Identities=15% Similarity=0.117 Sum_probs=78.8
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHh
Q 040580 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEV 151 (412)
Q Consensus 72 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 151 (412)
+-|+.|+...||.++..-...|.+.-- |... -..+-..||..-....+++..+++++++..+.+..|..+
T Consensus 91 ~VG~EPSG~~FNsi~~Le~~~g~P~NP------mINA----GAI~~~sll~g~~~~~~~~~il~~~~~~ag~~l~~de~v 160 (319)
T PRK12356 91 KIGADPTGLPFNSVIAIELHGGKPLNP------LVNA----GAIATTSLVPGANSDERWQRILDGQQRFAGRELALSDEV 160 (319)
T ss_pred HhCCCCCCCCcchHHHhhccCCCCCCc------cccH----HHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCccCHHH
Confidence 347889999999887654433432100 0000 011222222221111223444555555554445555554
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------CHHHH
Q 040580 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSV-DS-ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI-------DKEGI 222 (412)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~ 222 (412)
|.+ -...|+-..|+. .-|+..|.-+ |. .+.....+.|+-....++.-.+.-.+-..|+.| +..+.
T Consensus 161 ~~S----E~~t~~RNrAlA--~~lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~ 234 (319)
T PRK12356 161 YQS----EQTTNFHNRAIA--WLLYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNPLTGKRVVDADNV 234 (319)
T ss_pred HHH----HHhhhHHHHHHH--HHHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHH
Confidence 443 223344444433 3355555442 22 233333344444444444444444555555544 44555
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCC
Q 040580 223 RAVSFTYLKERKFFMLGEFLRDVGLGRK 250 (412)
Q Consensus 223 ~~li~~~~~~~~~~~a~~~~~~~~~~~~ 250 (412)
..+......+|.+|.+-++.-+.+.+.+
T Consensus 235 r~v~s~M~TCGmYd~SG~fa~~VGlPaK 262 (319)
T PRK12356 235 PYILAEMTMEGLYERSGDWAYTVGLPGK 262 (319)
T ss_pred HHHHHHHHHcCCccchhhHHHHhCCccc
Confidence 6666666677888888887777655443
No 366
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.07 E-value=10 Score=28.51 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=18.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 040580 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDA 333 (412)
Q Consensus 303 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 333 (412)
|.-.+|..+|..|.+.|-.|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 344557777777777777766 46666554
No 367
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.28 E-value=1.2e+02 Score=27.39 Aligned_cols=143 Identities=11% Similarity=-0.036 Sum_probs=69.6
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHH----HHhhcCCCCCHHh
Q 040580 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID----QVSCRNADLLPEV 151 (412)
Q Consensus 76 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~----~m~~~~~~~~~~~ 151 (412)
.|++.+.-.++.-+....+-+....+-... ..+++.+-.++.+.+.+....++.. .|....-..+ ..
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f--------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT-~~ 142 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIF--------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLT-SI 142 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHH--------HHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchh-hh
Confidence 466666666666666665533322221111 2345666666776666655444433 3332221111 13
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCChHHHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 040580 152 YSRAISCFGKQGQLELMENTLKEMV-----SRGFSVDSATGNAFII---YYSRFGSLTEMETAYGRLKRSRHLIDKEGIR 223 (412)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~~~li~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (412)
...++..+.+.+++.-++..++.-. ..+-.|....+.-+.. .|...++++.|.-++..... .|...+-.
T Consensus 143 H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~---~Pa~~vs~ 219 (422)
T KOG2582|consen 143 HADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT---TPAMAVSH 219 (422)
T ss_pred HHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh---cchhHHHH
Confidence 4445666667777665554443211 1111111111111111 13456789999998888764 34444444
Q ss_pred HHHHHHH
Q 040580 224 AVSFTYL 230 (412)
Q Consensus 224 ~li~~~~ 230 (412)
..+.+|-
T Consensus 220 ~hlEaYk 226 (422)
T KOG2582|consen 220 IHLEAYK 226 (422)
T ss_pred HHHHHHH
Confidence 4444443
No 368
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.94 E-value=72 Score=25.71 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=23.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 040580 155 AISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198 (412)
Q Consensus 155 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 198 (412)
.+..|.+.|.+++|.+++++..+. |+......-+....+..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 345567777777777777777663 44444444444444333
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.92 E-value=51 Score=26.79 Aligned_cols=61 Identities=13% Similarity=-0.116 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 040580 82 LCALMLCYANNGFVLEAQVVWEELLS-SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
+...+.......+.+......+...+ ....|+..+|..++.++...|+.++|.+..+++..
T Consensus 111 ~~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 111 YAALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333455555554444444433 12368888888888888888888888888887754
No 370
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.72 E-value=1e+02 Score=25.95 Aligned_cols=20 Identities=10% Similarity=-0.102 Sum_probs=10.7
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 040580 190 FIIYYSRFGSLTEMETAYGR 209 (412)
Q Consensus 190 li~~~~~~g~~~~a~~~~~~ 209 (412)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 45555555555555555544
No 371
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.71 E-value=30 Score=22.06 Aligned_cols=22 Identities=0% Similarity=0.052 Sum_probs=10.6
Q ss_pred HHHHHHHccCChhHHHHHHHHH
Q 040580 294 IRAVAFSRMSMFWDLHLSLEHM 315 (412)
Q Consensus 294 ~ll~~~~~~g~~~~a~~~~~~m 315 (412)
.+|.++...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555555555555554444
No 372
>PRK13342 recombination factor protein RarA; Reviewed
Probab=60.31 E-value=1.5e+02 Score=27.71 Aligned_cols=160 Identities=14% Similarity=0.023 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHH---CCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHH
Q 040580 166 ELMENTLKEMVS---RGF-SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241 (412)
Q Consensus 166 ~~a~~~~~~m~~---~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 241 (412)
++...++..... .|+ ..+......++..+ .|+...+..+++.+...+...+... ..++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~----------------v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLEL----------------LEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHH----------------HHHH
Confidence 444555554432 233 44445555554432 6788888777777654322222222 2222
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhc---CCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChh-----HHHHHHH
Q 040580 242 LRDVGLGRKDLGNLLWNLLLLSYAG---NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW-----DLHLSLE 313 (412)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~-----~a~~~~~ 313 (412)
+......... +......+++++.+ ..+++.|+..+.+|.+.|..|....-..++.++...|.-+ -|...++
T Consensus 216 ~~~~~~~~d~-~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~ 294 (413)
T PRK13342 216 LQKRAARYDK-DGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAAD 294 (413)
T ss_pred HhhhhhccCC-CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Confidence 2211100000 11233444555544 4788999999999999888888766666666666655422 2344445
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhccccchHH
Q 040580 314 HMKHESVGPDLVTYGCVVDAYLDKRLGRNLD 344 (412)
Q Consensus 314 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 344 (412)
....-|.+-........+-.++.+-.-..+.
T Consensus 295 ~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~ 325 (413)
T PRK13342 295 AVERIGMPEGRIALAQAVIYLALAPKSNAAY 325 (413)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHcCCCccHHH
Confidence 4455666443333333333344433333333
No 373
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.30 E-value=93 Score=25.40 Aligned_cols=92 Identities=10% Similarity=-0.028 Sum_probs=51.4
Q ss_pred HHHHHhcccHHHHHHHHHHHhcCCCCcc--hHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccC
Q 040580 226 SFTYLKERKFFMLGEFLRDVGLGRKDLG--NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS 303 (412)
Q Consensus 226 i~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 303 (412)
...+..++++++|...++.......+.+ ..+--.|.......|.+++|+.+++.....+.. ......--+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 4455667777777777765433333211 122223345566667777777777665543221 222333445666777
Q ss_pred ChhHHHHHHHHHHhCC
Q 040580 304 MFWDLHLSLEHMKHES 319 (412)
Q Consensus 304 ~~~~a~~~~~~m~~~g 319 (412)
+-++|..-|......+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 7777777777766654
No 374
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.16 E-value=3.3e+02 Score=31.63 Aligned_cols=59 Identities=10% Similarity=-0.132 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 289 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
..+|-...+...+.|+++.|...+-...+.+ .|. .+---.+-....|+...|..++++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPE--IVLERAKLLWQTGDELNALSVLQEI 1728 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cch--HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3567777777788999999987765555544 333 3344455667788888888888776
No 375
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=60.12 E-value=11 Score=28.31 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=18.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 040580 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIY 193 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 193 (412)
..|.-..|..+|..|.++|-.||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 344555666677777777766663 5555544
No 376
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=59.82 E-value=1.2e+02 Score=26.62 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=48.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 040580 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164 (412)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 164 (412)
++....+..+.....+.++.+.. ...-...+..+...|++..|+++..+..+.--. -..|+.+=. -..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~--l~~~~c~~~---L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLLEE--LKGYSCVRH---LSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--cccchHHHH---HhHH
Confidence 33444444444444444444432 223344455556677777777776665432100 001111100 0012
Q ss_pred hHHHHHHHHHHHHCC-----CCCChHHHHHHHHHHHhcCCHHHHH
Q 040580 165 LELMENTLKEMVSRG-----FSVDSATGNAFIIYYSRFGSLTEME 204 (412)
Q Consensus 165 ~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~a~ 204 (412)
+++......++.+.. ...|+..|..++.+|.-.|+...+.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 222222222222110 1346677777888877777665544
No 377
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=59.71 E-value=98 Score=27.55 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=53.5
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHH--HHHHHHHHccCCHHHHH
Q 040580 57 KKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVL--SDLMDAYGRIGCFNEII 134 (412)
Q Consensus 57 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~~~~a~ 134 (412)
.--+.+|.++|++..+.| ..+|+. -+.+...| ...+.+.+++ .|+.+| ..|.-+.-+.|+..+|.
T Consensus 229 a~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~------~~~da~~rRD--tnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQS------PQHEAQLRRD--TNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhc------cchhhhhhcc--cchhhHHHHHHHHHHHHhhhHHHHH
Confidence 344667788887776643 222221 11111122 2233344443 333333 33444445667777777
Q ss_pred HHHHHHhhcCCCCCHH--hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 135 SIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 135 ~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
+.|+++.+. ++.... ....||.++....-+..+..++.+.-+
T Consensus 296 K~~RDL~ke-~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 296 KIMRDLMKE-FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 777766533 221111 344577777766666666666555544
No 378
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.68 E-value=2.2e+02 Score=29.49 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=21.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040580 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231 (412)
Q Consensus 194 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 231 (412)
|......+-+...++.+....-.++....+.++..|+.
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 34444555566666666655555566666666666654
No 379
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=59.55 E-value=1.3e+02 Score=26.63 Aligned_cols=151 Identities=10% Similarity=0.007 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
.=|.++|+..... ...+.+++.+-+.+.-+.-.++| ||+..+-......+...|--+-..=.=.++
T Consensus 184 ~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~ 249 (412)
T KOG2297|consen 184 SFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQ 249 (412)
T ss_pred HHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 3356677666532 22455666554444433333333 666665555555555444322211111111
Q ss_pred hhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCh----HHHHHHHHHHHhcCC-HHHHHHHHHHHHhCC
Q 040580 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLK-EMVSRGFSVDS----ATGNAFIIYYSRFGS-LTEMETAYGRLKRSR 214 (412)
Q Consensus 141 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~----~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~ 214 (412)
.. ......-..|..-..+...+++.....+ +|++.++ |+. ..|+.+|++---..+ ---|.+.++.++
T Consensus 250 ~~---~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK--- 322 (412)
T KOG2297|consen 250 SE---GARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLK--- 322 (412)
T ss_pred HH---HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHH---
Confidence 00 0000122222233333444555554444 4444443 443 346666655432221 122444444433
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHH
Q 040580 215 HLIDKEGIRAVSFTYLKERKFFML 238 (412)
Q Consensus 215 ~~~~~~~~~~li~~~~~~~~~~~a 238 (412)
+|..|+.++|..|+.+-.
T Consensus 323 ------~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 ------QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred ------hhhHHHHHHhcCChHHHH
Confidence 577777777777776543
No 380
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.35 E-value=65 Score=23.30 Aligned_cols=79 Identities=11% Similarity=0.031 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHH
Q 040580 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFM 278 (412)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 278 (412)
..++|..|.+.+...+. ....+--+-+..+.+.|++++| +.. +.....||...|-+|- -.+.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~--~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLL--PQCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHH--HTTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHh--cccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 45666666666665543 1222222234445555666655 111 3333344445554432 234555666666666
Q ss_pred HHHHcC
Q 040580 279 RMSEAG 284 (412)
Q Consensus 279 ~m~~~~ 284 (412)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555444
No 381
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=59.21 E-value=1.6e+02 Score=27.90 Aligned_cols=90 Identities=12% Similarity=0.014 Sum_probs=60.9
Q ss_pred CCCHhhH-HHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHh---cCCcccHHHHHHHhcc---CchHHHHH
Q 040580 321 GPDLVTY-GCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFG---KGDFHSSSEAFLEFKR---QRKWTYRK 393 (412)
Q Consensus 321 ~p~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~---~~~~~~a~~~~~~~~~---~~~~~~~~ 393 (412)
.|+..|+ +.+++-+...|-...|...+..+..-++|+...|.-+|..=. .++..-+.+.++.+.. .|+..|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 4454444 356666777788888888888886667788888877776432 2556666666666544 67777777
Q ss_pred HHHHHHHcCccccc--ccc
Q 040580 394 LIAVYLKKQLRRNQ--IFW 410 (412)
Q Consensus 394 l~~~~~~~g~~~~a--~~w 410 (412)
...-=...|..+.+ ++|
T Consensus 536 y~~~e~~~g~~en~~~~~~ 554 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYW 554 (568)
T ss_pred HHHhhccCCCcccccHHHH
Confidence 77666667777766 555
No 382
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.08 E-value=67 Score=23.31 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777777777777776665
No 383
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.01 E-value=21 Score=31.19 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=32.8
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCA 84 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 84 (412)
-||..|+...+.||+++|+.++++.++.|+.--..+|-.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 378999999999999999999999999997644455543
No 384
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.76 E-value=2e+02 Score=28.50 Aligned_cols=192 Identities=10% Similarity=-0.036 Sum_probs=104.5
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHH-hcCCCCCHH--hHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCcCH----
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVK-SEGLLPDNS--TLCALMLCYA-NNGFVLEAQVVWEELLSSSFVLSV---- 114 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~--~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~~~~---- 114 (412)
+...|..||.. |++.++-.. +..++|..+ ++-.+...+. ...++++|+..+++....--.++.
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 55567777663 666666666 333444333 3444555554 677888898888876543222222
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC--CCHH--hHHHH-HHHHHhcCChHHHHHHHHHHHHCC---CCCChH
Q 040580 115 -QVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD--LLPE--VYSRA-ISCFGKQGQLELMENTLKEMVSRG---FSVDSA 185 (412)
Q Consensus 115 -~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~--~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~ 185 (412)
..-..++..+.+.+... |.+.+++..+.--. ..+. .+..+ +.-+...+++..|.+.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 22345566666666665 88877775443211 1112 23333 222223378888888888775532 233344
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHh--cccHHHHHHHHHH
Q 040580 186 TGNAFIIYYS--RFGSLTEMETAYGRLKRSR---------HLIDKEGIRAVSFTYLK--ERKFFMLGEFLRD 244 (412)
Q Consensus 186 ~~~~li~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~ 244 (412)
.+..++.+.. +.+..+++.+..+.+.... ..|...++..+++.++. .|+++.+...+++
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4545555544 3455666666666653321 23455667777666554 5665555554444
No 385
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.69 E-value=2.1e+02 Score=28.64 Aligned_cols=75 Identities=12% Similarity=-0.006 Sum_probs=39.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 040580 85 LMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164 (412)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 164 (412)
-+..+.+.+++.....++. . .+.+...-..+..+....|+.++|......+=..| ...|...+.++..+.+.|.
T Consensus 105 ~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 105 FVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 3444555566665555221 1 13455555556666667777666655555543333 3345556666666655544
Q ss_pred h
Q 040580 165 L 165 (412)
Q Consensus 165 ~ 165 (412)
.
T Consensus 179 l 179 (644)
T PRK11619 179 Q 179 (644)
T ss_pred C
Confidence 3
No 386
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=57.22 E-value=1.4e+02 Score=26.38 Aligned_cols=17 Identities=12% Similarity=0.256 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHhccccc
Q 040580 325 VTYGCVVDAYLDKRLGR 341 (412)
Q Consensus 325 ~~~~~li~~~~~~~~~~ 341 (412)
.+|.-|+.++|..|+.+
T Consensus 322 K~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSE 338 (412)
T ss_pred HhhhHHHHHHhcCChHH
Confidence 35555666666666554
No 387
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.54 E-value=88 Score=25.26 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHhcCCCCC--HHhHH-----HHHHHHHhcCChHHHHHHHHHHHh
Q 040580 60 PHLAHQLVNTVKSEGLLPD--NSTLC-----ALMLCYANNGFVLEAQVVWEELLS 107 (412)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~--~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~ 107 (412)
.+.|+.+|+...+.--.|. ...-. ..+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4677777777765432221 11111 223456677777777777777665
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.07 E-value=19 Score=22.96 Aligned_cols=25 Identities=8% Similarity=-0.016 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHH
Q 040580 258 NLLLLSYAGNFKMKSLQREFMRMSE 282 (412)
Q Consensus 258 ~~li~~~~~~g~~~~a~~~~~~m~~ 282 (412)
-.+|.+|...|++++|.+.++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3457777777888888777777663
No 389
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.36 E-value=21 Score=17.65 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 152 YSRAISCFGKQGQLELMENTLKEMV 176 (412)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~m~ 176 (412)
|..+...+...|+++.|...|.+..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444445555555555555555443
No 390
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.03 E-value=1.5e+02 Score=25.98 Aligned_cols=141 Identities=9% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcccHHHHHHHHHH----HhcCCCCcchHHHH
Q 040580 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKE-------GIRAVSFTYLKERKFFMLGEFLRD----VGLGRKDLGNLLWN 258 (412)
Q Consensus 190 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~ 258 (412)
+.+-..+.+++++|...+..+...|+..+.. +...+...|.+.|+.....++... |..-...-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHhcC-CChHHHHHHHHHHHHcCCCCcHhHHH-----HHHHHHHccCChhHHHHHH----HHHHhCCCCCCHhhHH
Q 040580 259 LLLLSYAGN-FKMKSLQREFMRMSEAGFHPDLTTFN-----IRAVAFSRMSMFWDLHLSL----EHMKHESVGPDLVTYG 328 (412)
Q Consensus 259 ~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~~~~ 328 (412)
+||..+-.. ..++..+.+.....+...+-+..-.. -++..+.+.|.+.+|+.+. .++++..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HH
Q 040580 329 CV 330 (412)
Q Consensus 329 ~l 330 (412)
.+
T Consensus 169 ll 170 (421)
T COG5159 169 LL 170 (421)
T ss_pred hh
No 391
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=54.36 E-value=28 Score=22.50 Aligned_cols=51 Identities=14% Similarity=-0.046 Sum_probs=31.1
Q ss_pred CCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 040580 286 HPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDK 337 (412)
Q Consensus 286 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 337 (412)
.|....++.++..+++..-+++++..+.+..++|. .+..+|.--++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 35555666677777766666777777777766665 3555666666665553
No 392
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.35 E-value=84 Score=27.65 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 040580 274 QREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336 (412)
Q Consensus 274 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 336 (412)
.++++.|.+.++.|.-.+|.-+...+.+.=.+.++..+|+.+.. |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 35677777778888877777777777777777888888887664 33336666666664
No 393
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.13 E-value=71 Score=22.10 Aligned_cols=34 Identities=9% Similarity=0.008 Sum_probs=15.8
Q ss_pred ccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChH
Q 040580 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMK 271 (412)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 271 (412)
|+.+.|.+++..+. .++ ..|..+++++-..|.-.
T Consensus 50 g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 50 GNESGARELLKRIV-QKE----GWFSKFLQALRETEHHE 83 (88)
T ss_pred CcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchh
Confidence 44444444444443 222 34555555555554433
No 394
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=53.74 E-value=1.1e+02 Score=24.40 Aligned_cols=109 Identities=13% Similarity=0.189 Sum_probs=54.7
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 98 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
..+++..+.+.|.--|..---+.+..-.+.| ..-..+.+++.+.| .++.+....+..+......+.|..++..-..
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkG--i~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKG--IDDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcC--CCHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 3445555555555445444444555555554 33445566666666 3445555555555555555555555554433
Q ss_pred CC-CCCChHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 040580 178 RG-FSVDSATGNAFIIYYSRFG-SLTEMETAYGRL 210 (412)
Q Consensus 178 ~g-~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~ 210 (412)
.. ..|+..-...+...+.+.| .++.+..++..+
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 32 3344444444555555444 344444444443
No 395
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=53.69 E-value=1.6e+02 Score=25.96 Aligned_cols=114 Identities=10% Similarity=0.023 Sum_probs=59.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 040580 118 SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF 197 (412)
Q Consensus 118 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 197 (412)
-.++....+.++.....+.++.+..- ..-...+..+...|++..|++++.+..+. .. +...|+++=..-
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~~v------~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~--- 170 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIKTV------QQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLS--- 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHh---
Confidence 34555556666666666666666431 23445677778889999999999887663 10 111111111111
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcccHHHHHHHH
Q 040580 198 GSLTEMETAYGRLKRS-----RHLIDKEGIRAVSFTYLKERKFFMLGEFL 242 (412)
Q Consensus 198 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 242 (412)
.++++-....+.+.+. -..-|+..|..+..||.-.|+...+.+-+
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1222222222222211 01346667777777777766665554433
No 396
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.58 E-value=2.8e+02 Score=28.80 Aligned_cols=116 Identities=12% Similarity=0.001 Sum_probs=62.3
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcC---CCCCHHhHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCcCHHHHHH-
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEG---LLPDNSTLCALMLCYANNGFV--LEAQVVWEELLSSSFVLSVQVLSD- 119 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~- 119 (412)
-|..|+..|...|+.++|+++|.+..... -.--..-+..++.-+.+.+.. +...++-++..+....-...++..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47788888888888888888888876521 011112233355544444444 555555555544321111111111
Q ss_pred -----------HHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 040580 120 -----------LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161 (412)
Q Consensus 120 -----------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 161 (412)
-+-.|.+....+-+...++.+....-..++...+.++.-|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122344555666677777777655544455566666666553
No 397
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.46 E-value=1.3e+02 Score=24.85 Aligned_cols=91 Identities=8% Similarity=-0.023 Sum_probs=56.2
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCCH-----HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 040580 52 EDLGRKKKPHLAHQLVNTVKSEGLLPDN-----STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126 (412)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 126 (412)
.-+.++|++++|..-|...... +++.. ..|..-.-++.+.+.++.|..--...++.+ +......-.-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 3455678888888888777664 22222 223333345667777777777766666654 2233344444567777
Q ss_pred cCCHHHHHHHHHHHhhcC
Q 040580 127 IGCFNEIISIIDQVSCRN 144 (412)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~ 144 (412)
...+++|++=|.++.+.+
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 777888888787776543
No 398
>PRK09462 fur ferric uptake regulator; Provisional
Probab=52.95 E-value=1e+02 Score=23.75 Aligned_cols=35 Identities=9% Similarity=0.295 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC
Q 040580 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG 128 (412)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 128 (412)
..-.|.++++.+.+.+...+..|-..-++.+.+.|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555443334433333334444433
No 399
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=52.49 E-value=69 Score=31.38 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=21.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 138 (412)
+...-.-++..|.+.|-.+.+.++.+.+-..-+ ...-|..-+..+.++|+...+..+-+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 344445555556666665555555555443211 12234444444555555544443333
No 400
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=52.40 E-value=60 Score=20.73 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=7.4
Q ss_pred hcCChHHHHHHHHHHH
Q 040580 161 KQGQLELMENTLKEMV 176 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~ 176 (412)
..|++=+|-++++++-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3445555555555543
No 401
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=52.22 E-value=48 Score=24.18 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH
Q 040580 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVL 96 (412)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 96 (412)
++..+...+..-.|.++++.+.+.+..++..|--..|..+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555555556667777777776666666666555566666665433
No 402
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=52.21 E-value=1e+02 Score=24.47 Aligned_cols=36 Identities=11% Similarity=-0.050 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC
Q 040580 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG 128 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 128 (412)
.+.-.|.++++.+.+.+...+..|-..-|..+.+.|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 334445555555554443334333333333343333
No 403
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.87 E-value=2.9e+02 Score=28.43 Aligned_cols=51 Identities=16% Similarity=-0.084 Sum_probs=27.0
Q ss_pred cccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHH
Q 040580 20 PSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTV 70 (412)
Q Consensus 20 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 70 (412)
=..|...|++++|.+.-..-+..=..++-.-...+.+.+++..|-+++.++
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 345667777777776654332111112222233455566677777777665
No 404
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.03 E-value=1e+02 Score=23.06 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHH
Q 040580 132 EIISIIDQVSCRNADLLPE-VYSRAISCFGKQGQLELMENTLK 173 (412)
Q Consensus 132 ~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~ 173 (412)
.+.++|+.|..+++..... .|......+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555566665555544333 45555555555566666655554
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.73 E-value=1.3e+02 Score=29.16 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
+-+-.++..|... +.|-=.+.|...-..--.|+...|...+............+..-.|.....+.|...+|..++.+.
T Consensus 590 e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 4445555555432 233323333222223346777777777666554322222234455666667778888888888777
Q ss_pred hhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 040580 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195 (412)
Q Consensus 141 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 195 (412)
.... ...|-++-.+-+++....++++|++.|++..+.... +...-+.|...-|
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 6554 455667888888888888999999999887775322 3444444444333
No 406
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.68 E-value=30 Score=22.37 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=20.9
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 040580 112 LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160 (412)
Q Consensus 112 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (412)
|....++-++..+++-.-.+++...+.+...+| ..+.++|-.-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 333444444444444444444555554444444 234444444444433
No 407
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.56 E-value=2.1e+02 Score=26.46 Aligned_cols=65 Identities=14% Similarity=0.071 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA--DLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
...+.-+...|..+|+++.|++.|.+.++--. +-....|-.+|..-.-.|+|.....+..+..+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 35678889999999999999999999654321 112236666777777888998888887776654
No 408
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=50.38 E-value=89 Score=24.86 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHH
Q 040580 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLE 97 (412)
Q Consensus 30 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 97 (412)
+.+.++++...-+....--.++..+....+.-.|.++++.+.+.+..++..|-..-|..+.+.|-+.+
T Consensus 11 ~~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 11 AQAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 33444444333234444556777777777788999999999999888888887777777888776543
No 409
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=50.36 E-value=82 Score=21.72 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=19.8
Q ss_pred HHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175 (412)
Q Consensus 135 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 175 (412)
++|+-....|+..+|.+|-.++.-..-+--++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444555555555555554444444444444444444
No 410
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.30 E-value=1.8e+02 Score=25.71 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Q 040580 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGL 247 (412)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 247 (412)
++|+.|.+.++.|.-..+..+.-.+...=.+.++..+|+.+-.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555555555555555555555555555555555555433
No 411
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=49.75 E-value=2.6e+02 Score=27.42 Aligned_cols=107 Identities=4% Similarity=-0.010 Sum_probs=57.7
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 040580 112 LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFI 191 (412)
Q Consensus 112 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 191 (412)
+....|..|++.+. .=+.+.-.++++++.. . . ...+..++++....|-......+.+.+....+.+ ...-..+.
T Consensus 308 ~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~-~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K-K--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHH
Confidence 34556666666553 3456666677777643 1 1 4577778888888887776666666666554433 22222233
Q ss_pred HH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 040580 192 IY--YSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224 (412)
Q Consensus 192 ~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (412)
.. ..+.-..+-...+++.+......+....+.+
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~s 416 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQPYLRES 416 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHH
Confidence 22 2234444444555544444445555544333
No 412
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.92 E-value=5e+02 Score=30.35 Aligned_cols=149 Identities=11% Similarity=-0.035 Sum_probs=87.0
Q ss_pred HHHHHhcCCChhHHHHHHHHH----HhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 040580 50 LVEDLGRKKKPHLAHQLVNTV----KSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125 (412)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 125 (412)
+..+--+.+.+.+|...++.- ++. .....-|..+...|+..++++...-+...-.. .|+. ..-|....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl---~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSL---YQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccH---HHHHHHHH
Confidence 334445667777888777772 221 11223344455588888888888777764221 2332 23344456
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH-HHHHHHHhcCCHHHHH
Q 040580 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGN-AFIIYYSRFGSLTEME 204 (412)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~ 204 (412)
..|++..|...|+++.+.+ ++.+..++-++......|.++.++...+-...+ ..+....++ .=+.+--+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 6788988999999887665 344556777766666677777766655444333 222222222 2334446777777766
Q ss_pred HHHH
Q 040580 205 TAYG 208 (412)
Q Consensus 205 ~~~~ 208 (412)
....
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 6654
No 413
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.77 E-value=2.6e+02 Score=27.15 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=71.3
Q ss_pred ccCCCChHHHHHHHHHhhc---c---------ChhhHH---HHHHHHhcCCChhHHHHHHHHH-------HhcCCC----
Q 040580 23 QTHPKNGDLARKIIRYRKQ---E---------GFVDCA---SLVEDLGRKKKPHLAHQLVNTV-------KSEGLL---- 76 (412)
Q Consensus 23 ~~~~~~~~~A~~~~~~~~~---~---------~~~~~~---~li~~~~~~~~~~~a~~~~~~m-------~~~g~~---- 76 (412)
+..+..+++|...|.-... + ++.... .+...+..+|+.+.|-++.++- ..-.+.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 4466678888888865432 1 333333 4445677788876666655543 222111
Q ss_pred --------C-CHHhHHHH---HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-ccCCHHHHHHHHHHHh
Q 040580 77 --------P-DNSTLCAL---MLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG-RIGCFNEIISIIDQVS 141 (412)
Q Consensus 77 --------p-~~~~~~~l---l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~ 141 (412)
| |...|-+| |+.+.+.|.+..|.++-+-+.+.+..-|......+|+.|+ ++.++.-.+++++..+
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 22233332 3445667888888887777777664446777777777765 5566777777777663
No 414
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=48.76 E-value=1.6e+02 Score=24.65 Aligned_cols=179 Identities=14% Similarity=0.013 Sum_probs=87.6
Q ss_pred CChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH--HHHhcCChHHHH
Q 040580 93 GFVLEAQVVWEELLSSSFVLS-VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS--CFGKQGQLELME 169 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~ 169 (412)
|-+..|.-=|.+... +.|+ ..+||-|.-.+...|+++.|.+.|+...+-+..- -|..+=+ ++--.|+++-|.
T Consensus 79 GL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 79 GLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---hHHHhccceeeeecCchHhhH
Confidence 333444434444443 2344 5778888888888899999999998886543211 2322222 223457788777
Q ss_pred HHHHHHHHCC-CCCChHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHH-HhcccHHHHHHHHHHHh
Q 040580 170 NTLKEMVSRG-FSVDSATGNAFIIYYSRFGSLTEMETAYG-RLKRSRHLIDKEGIRAVSFTY-LKERKFFMLGEFLRDVG 246 (412)
Q Consensus 170 ~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~ 246 (412)
+=|.+.-+.. -.|-...|--++ -+.-++.+|..-+. ... ..|..-|...|-.| ...=..+.+.+-.....
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a 226 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEETLMERLKADA 226 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHHHHHHHHHhhc
Confidence 6666554432 222222232222 23335555544332 222 12333333332222 22111222222221111
Q ss_pred cCCCC---cchHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 247 LGRKD---LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 247 ~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
..... .=+.||-.+.+-+...|+.++|..+|+-....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 10000 01256777777777888888888888776643
No 415
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=48.54 E-value=67 Score=21.26 Aligned_cols=33 Identities=6% Similarity=0.109 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc
Q 040580 129 CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162 (412)
Q Consensus 129 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 162 (412)
+.+.|..++..++... +.+|..||++..-+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4455666666665443 55666777766555443
No 416
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=48.43 E-value=3.3e+02 Score=28.09 Aligned_cols=316 Identities=12% Similarity=0.027 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHhcCCCC-------CHHhHHHHHHHHHhcC----ChHHHHHH----HHHHHhCCCCcCHHHHHHHHHHHH
Q 040580 61 HLAHQLVNTVKSEGLLP-------DNSTLCALMLCYANNG----FVLEAQVV----WEELLSSSFVLSVQVLSDLMDAYG 125 (412)
Q Consensus 61 ~~a~~~~~~m~~~g~~p-------~~~~~~~ll~~~~~~~----~~~~a~~~----~~~m~~~~~~~~~~~~~~li~~~~ 125 (412)
+....+++++...|+.. .=.-|+.|+.-+.+.. ......++ .+.....|. |+ --|....
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~-~~-----eAI~hAl 371 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGL-PS-----EAIDHAL 371 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCC-hH-----HHHHHHH
Confidence 45667788888777532 2234555544433321 11222222 233344452 22 2334445
Q ss_pred ccCCHHHHHHHHHHHhhc--------------CCCCCHHhHH----HHHH--HHHhcCChHHHHHHHHHHHHCCCCCCh-
Q 040580 126 RIGCFNEIISIIDQVSCR--------------NADLLPEVYS----RAIS--CFGKQGQLELMENTLKEMVSRGFSVDS- 184 (412)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~--------------~~~~~~~~~~----~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~- 184 (412)
+.|+++.|..++++...+ +--|++...+ .++. ......++.+|..++.+....-..|+.
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~ 451 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHS 451 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCccc
Confidence 677777777777655111 0112222221 1222 234667899999998887654222222
Q ss_pred ------HHHHHHHHH-HHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcc
Q 040580 185 ------ATGNAFIIY-YSRFGSLTEMETAYGRLKRS----RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG 253 (412)
Q Consensus 185 ------~~~~~li~~-~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 253 (412)
..++.+-.. ....|+++.|.++-+..... -..+....+..+..+..-.|++++|..+..+........+
T Consensus 452 ~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~ 531 (894)
T COG2909 452 RQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD 531 (894)
T ss_pred chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc
Confidence 234433322 23568888888887776543 2334556677777778888999999888776433222222
Q ss_pred h---HHHHHHH--HHHhcCCCh--HHHHHHHHHHHHc--CCC----CcHhHHHHHHHHHHccCCh-hHHHHHHHHHHhCC
Q 040580 254 N---LLWNLLL--LSYAGNFKM--KSLQREFMRMSEA--GFH----PDLTTFNIRAVAFSRMSMF-WDLHLSLEHMKHES 319 (412)
Q Consensus 254 ~---~~~~~li--~~~~~~g~~--~~a~~~~~~m~~~--~~~----p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g 319 (412)
. ..|..+. ..+..+|+. ++....|...... +-+ +-..++..++.++.+..-. .++..-+.--....
T Consensus 532 ~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~ 611 (894)
T COG2909 532 VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT 611 (894)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc
Confidence 2 2333332 223445633 2333334433321 111 1234555566666652211 11222222222223
Q ss_pred CCCCHhhHH--HHHHHHHhccccchHHHHHHhc-cC---C-CCCCcccHHHHHHH-H--hcCCcccHHHHHHH
Q 040580 320 VGPDLVTYG--CVVDAYLDKRLGRNLDFGLSKM-NL---D-DSPVVSTDPYVFEA-F--GKGDFHSSSEAFLE 382 (412)
Q Consensus 320 ~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m-~~---~-~~p~~~~~~~li~~-~--~~~~~~~a~~~~~~ 382 (412)
..|-...+. .|.+.....|+.++|...++++ .. + ..++...-...+.. | .+|+...+...+.+
T Consensus 612 ~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 612 PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 333222222 5667777799999998888877 22 1 22232222333333 2 34888888777766
No 417
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=48.34 E-value=1.5e+02 Score=29.27 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=59.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHccCCHH------HHHHHHHHHhhcCCCCCHHhHHHH
Q 040580 84 ALMLCYANNGFVLEAQVVWEELLSS--SFVLSVQVLSDLMDAYGRIGCFN------EIISIIDQVSCRNADLLPEVYSRA 155 (412)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~~~~~~~~~~~~l 155 (412)
+|+.+|...|++..+.++++..... |-+.=...+|..|+...+.|.++ .|.+.+++.. +.-+.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888999999999999998888763 22333567888888888888764 3444444443 33444578777
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 040580 156 ISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~m~~ 177 (412)
+.+-..--+-.-.+-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7766554444444445555544
No 418
>PRK09462 fur ferric uptake regulator; Provisional
Probab=47.94 E-value=1.2e+02 Score=23.38 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=35.1
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 040580 174 EMVSRGFSVDSATGNAFIIYYSRF-GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234 (412)
Q Consensus 174 ~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (412)
.+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 3455676654432 3345555543 3566777888888777766666665555555555443
No 419
>PRK09857 putative transposase; Provisional
Probab=47.82 E-value=2e+02 Score=25.40 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040580 117 LSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183 (412)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 183 (412)
+..++....+.++.++..++++.+.+. .+......-++..-+.+.|.-++++++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334444444555555555555555443 222222333444555555555677778888888877654
No 420
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=47.44 E-value=1.5e+02 Score=23.91 Aligned_cols=43 Identities=5% Similarity=-0.037 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040580 165 LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH 215 (412)
Q Consensus 165 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 215 (412)
+++|.+.|++... ..|+..+|..-+.... +|-.+..++.+.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 4455555555554 3678888887777653 45566666666543
No 421
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=46.75 E-value=45 Score=24.56 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=24.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 040580 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93 (412)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (412)
.++..+...+..-.|.++++.+.+.|...+..|.-.-|..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 445555555556666666666666665555555444445555444
No 422
>PRK09857 putative transposase; Provisional
Probab=46.39 E-value=1.8e+02 Score=25.61 Aligned_cols=66 Identities=6% Similarity=-0.030 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 040580 152 YSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218 (412)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 218 (412)
+..++.-..+.++.++..++++.+.+. ..+.....-++..-+.+.|.-+++.++...|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555667777777777777655 222333444566666677777788889999998887654
No 423
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.06 E-value=99 Score=21.42 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHh
Q 040580 128 GCFNEIISIIDQVS 141 (412)
Q Consensus 128 ~~~~~a~~~~~~m~ 141 (412)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 424
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.10 E-value=2.5e+02 Score=25.87 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=21.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 040580 161 KQGQLELMENTLKEMVSRGFSVDSA--TGNAFIIYYS--RFGSLTEMETAYGRLK 211 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~--~~g~~~~a~~~~~~~~ 211 (412)
+.+++..|.++|+++..+ +.++.. .+..+..+|. ..-++++|.+.++...
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 445555555555555544 333222 2222323322 2344555555555444
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.09 E-value=1.1e+02 Score=26.15 Aligned_cols=22 Identities=5% Similarity=-0.165 Sum_probs=12.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHH
Q 040580 259 LLLLSYAGNFKMKSLQREFMRM 280 (412)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m 280 (412)
.|...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555566666666666555
No 426
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.88 E-value=4e+02 Score=28.08 Aligned_cols=257 Identities=11% Similarity=-0.075 Sum_probs=152.0
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 040580 31 LARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSF 110 (412)
Q Consensus 31 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 110 (412)
....+.+.+..+|...--..+..+.+.+.. .+...+..+... ++...=...+.++.+.+........+..+.+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~--- 694 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG--- 694 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---
Confidence 444666667788888888889998888864 455555566543 3544444555555554322222233434444
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 040580 111 VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190 (412)
Q Consensus 111 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 190 (412)
.+|..+-...+.++...+..+ ...+...+. .+++.+-...+.++.+.+..+. +..... .++...-...
T Consensus 695 ~~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~----D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~a 762 (897)
T PRK13800 695 SPDPVVRAAALDVLRALRAGD-AALFAAALG----DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAV 762 (897)
T ss_pred CCCHHHHHHHHHHHHhhccCC-HHHHHHHhc----CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHH
Confidence 256677667777776554221 222333332 4566666667777777665432 222222 3566666677
Q ss_pred HHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHH-HHHhcCCCCcchHHHHHHHHHHhcCC
Q 040580 191 IIYYSRFGSLTE-METAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFL-RDVGLGRKDLGNLLWNLLLLSYAGNF 268 (412)
Q Consensus 191 i~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g 268 (412)
..++...+..+. +...+..+.+ .+|..+-...+.++.+.|....+...+ ..+... +...-...+.++...+
T Consensus 763 a~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~----d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 763 AKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRAS----AWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCC----ChHHHHHHHHHHHhcc
Confidence 778877775443 3344445443 467888999999999988766553333 333222 2356666777888777
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 040580 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
.. ++...+..+.+ .|+...-...+.++.+.+....+...+....+
T Consensus 836 ~~-~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 836 AD-VAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred cc-chHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 64 45555555554 46666666777788776434456666666554
No 427
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=44.52 E-value=2e+02 Score=24.47 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=17.9
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040580 147 LLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182 (412)
Q Consensus 147 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 182 (412)
|.|.....++..|. .+++++|.+++.++-+.|..|
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 44444444444433 245555555555555555554
No 428
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=44.38 E-value=1.9e+02 Score=24.24 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=17.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSS 109 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 109 (412)
+..||-|.--+...|+++.|.+.|+...+.+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 3445555555555556666666555555543
No 429
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.04 E-value=2.4e+02 Score=25.27 Aligned_cols=29 Identities=10% Similarity=-0.085 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 040580 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGF 285 (412)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 285 (412)
+..+..-...+|..+.|..+++-+.+.++
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33344445567777888877777776554
No 430
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.96 E-value=2.1e+02 Score=28.35 Aligned_cols=90 Identities=11% Similarity=-0.066 Sum_probs=61.8
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChHH------HHHHHHHHHhCCCCcCHHHHHHH
Q 040580 49 SLVEDLGRKKKPHLAHQLVNTVKSE--GLLPDNSTLCALMLCYANNGFVLE------AQVVWEELLSSSFVLSVQVLSDL 120 (412)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~------a~~~~~~m~~~~~~~~~~~~~~l 120 (412)
+++.+|..+|++.++.++++..... |-+.=...+|.-|+...+.|.++. +.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8999999999999999999999764 333445678888899999997653 333333333 56688899888
Q ss_pred HHHHHccCCHHHHHHHHHHHh
Q 040580 121 MDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~m~ 141 (412)
+.+-..--+-.....++.+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 876554333333344444443
No 431
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=43.79 E-value=2.3e+02 Score=25.04 Aligned_cols=156 Identities=15% Similarity=0.072 Sum_probs=75.6
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH------HHHHHHHHHHHccCCHHHHHHHHHHHhhc-C
Q 040580 72 SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV------QVLSDLMDAYGRIGCFNEIISIIDQVSCR-N 144 (412)
Q Consensus 72 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~ 144 (412)
+-|.+|+...||+++..=...|. +.|. .+-..|+..-....+++..++.++++... .
T Consensus 79 ~VG~ePSG~~FNsi~~Le~~~g~----------------P~NPmINAGAI~~~sll~~~~~~~~~~~il~~~~~~ag~~~ 142 (300)
T TIGR03814 79 RVGVEPSGDPFNSIVQLELEPGK----------------PRNPFINAGAIAVTSLLPGRTSEEKLERILEFVRKLAGNRS 142 (300)
T ss_pred HhCCCCCCCCccchhhhhccCCC----------------CCCccccHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhCCCC
Confidence 34778999999988653222232 2221 12222222111112344455556665444 4
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----
Q 040580 145 ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV-DS-ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI----- 217 (412)
Q Consensus 145 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----- 217 (412)
+..|..+|.+-. ..++-..|+. .-|++.|.-+ |. .+.....+.|+-....++.-.+.-.+-..|+.|
T Consensus 143 l~~d~~v~~SE~----~t~~rNrAla--~~lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~tg~~ 216 (300)
T TIGR03814 143 ISIDEEVAQSER----ETGFRNRALA--YLLKSFGNLENDVEEVLDVYFKQCSIEMTCKDLARAGLFLANGGVNPLTGEQ 216 (300)
T ss_pred CccCHHHHHHHH----hhhHHHHHHH--HHHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCCCCCe
Confidence 455555554322 3333344433 2344555443 32 233333344444444444444444555555544
Q ss_pred --CHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC
Q 040580 218 --DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR 249 (412)
Q Consensus 218 --~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 249 (412)
+..+...+......+|.+|.+-++.-+.+.+.
T Consensus 217 v~s~~~~r~v~s~M~TcGmYd~SG~fa~~VGlPa 250 (300)
T TIGR03814 217 VISAEVARRINALMLTCGLYDASGEFAYRVGLPA 250 (300)
T ss_pred ecCHHHHHHHHHHHHHcCCccchhhHHHHcCCcc
Confidence 33445555555566777777777777665443
No 432
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.70 E-value=46 Score=16.94 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=6.0
Q ss_pred CHHHHHHHHHHHh
Q 040580 129 CFNEIISIIDQVS 141 (412)
Q Consensus 129 ~~~~a~~~~~~m~ 141 (412)
+.+.|..+|+++.
T Consensus 2 ~~~~~r~i~e~~l 14 (33)
T smart00386 2 DIERARKIYERAL 14 (33)
T ss_pred cHHHHHHHHHHHH
Confidence 3444444454444
No 433
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.14 E-value=3.7e+02 Score=27.25 Aligned_cols=102 Identities=11% Similarity=-0.004 Sum_probs=53.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc
Q 040580 86 MLCYANNGFVLEAQVVWEELLSSSFVL---SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 162 (412)
+..+.+.+.+++|+.+.+.... ..| -......+|..+.-.|++++|-...-.|.... ..-|.-.+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~----~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNN----AAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcch----HHHHHHHHHHhccc
Confidence 3445555666666655544432 233 34556666777777777777766666664322 24555555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 040580 163 GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196 (412)
Q Consensus 163 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 196 (412)
++......+ +-......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 544432221 1111112244567777766665
No 434
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=43.10 E-value=1.8e+02 Score=26.20 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=54.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChH
Q 040580 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166 (412)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 166 (412)
+-|-++|++++|...|..-.... +-|.+++..-..+|.+...+..|+.=-......+- .-.-.|+--+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 34677899999999998776642 33888888888899988888776655554432220 00013333333333344455
Q ss_pred HHHHHHHHHHHCCCCCC
Q 040580 167 LMENTLKEMVSRGFSVD 183 (412)
Q Consensus 167 ~a~~~~~~m~~~g~~p~ 183 (412)
+|.+=.+...+ +.|.
T Consensus 183 EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHhHHHHHh--hCcc
Confidence 55444444444 3555
No 435
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.12 E-value=2.3e+02 Score=24.49 Aligned_cols=102 Identities=11% Similarity=-0.042 Sum_probs=52.6
Q ss_pred CCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHH----HHHHhcCCCCCHHhHHHHHHHHHhcCChH-HHH
Q 040580 25 HPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLV----NTVKSEGLLPDNSTLCALMLCYANNGFVL-EAQ 99 (412)
Q Consensus 25 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~ 99 (412)
+++++++|.+++... ...+.+.|+...|-++- +-..+.++++|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 356778888776543 22334455544444433 33334566677766666666665543221 223
Q ss_pred HHHHHHHh---CC--CCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 040580 100 VVWEELLS---SS--FVLSVQVLSDLMDAYGRIGCFNEIISII 137 (412)
Q Consensus 100 ~~~~~m~~---~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 137 (412)
.+.+.+.+ .| -.-|......+...|.+.|++.+|+..|
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33333332 22 1236678888889999999888887666
No 436
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.10 E-value=1.7e+02 Score=24.98 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH----HCCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMV----SRGF-SVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 211 (412)
..-.+...|.+.|++++|.++|+.+. +.|. .+...+...+..++.+.|+.+....+--++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34456677888888888888888763 2343 3355666677778888888888776655543
No 437
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.23 E-value=94 Score=19.82 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=23.7
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHH-----hcCChHHHHHH
Q 040580 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYA-----NNGFVLEAQVV 101 (412)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-----~~~~~~~a~~~ 101 (412)
..|++-+|.++++.+-..-..|....+..||...+ +.|+.+.|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45666677777766654322334445555555432 34555555544
No 438
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.91 E-value=2.1e+02 Score=23.69 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=47.1
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCHH-----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHh
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLPE-----VYSRAISCFGKQGQLELMENTLKEMVSRGFSVD-SATGNAFIIYYSR 196 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 196 (412)
-+.+.|++++|..-|.+....- ++.+. .|..-..++.+.+.++.|+.--....+.+ |+ ......-..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 3456677777777776665542 22222 44444556666677777666555555532 21 1111122235556
Q ss_pred cCCHHHHHHHHHHHHhC
Q 040580 197 FGSLTEMETAYGRLKRS 213 (412)
Q Consensus 197 ~g~~~~a~~~~~~~~~~ 213 (412)
...++.|..=|..+...
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 66666666666666654
No 439
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=40.01 E-value=1.2e+02 Score=25.22 Aligned_cols=34 Identities=12% Similarity=-0.021 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCCCc-------chHHHHHHHHHHhcCC
Q 040580 235 FFMLGEFLRDVGLGRKDL-------GNLLWNLLLLSYAGNF 268 (412)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g 268 (412)
.+.|..++.+|+...... ...-|..+..+|+++|
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g 177 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHG 177 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcC
Confidence 455556666554332211 1244556666666655
No 440
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.94 E-value=2.3e+02 Score=23.85 Aligned_cols=19 Identities=0% Similarity=-0.074 Sum_probs=8.5
Q ss_pred HHHhcCCChHHHHHHHHHH
Q 040580 262 LSYAGNFKMKSLQREFMRM 280 (412)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~m 280 (412)
......|+.++|+.....+
T Consensus 72 r~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHhccHHHHHHHHHHh
Confidence 3334444444444444443
No 441
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.64 E-value=2.8e+02 Score=24.84 Aligned_cols=148 Identities=9% Similarity=0.129 Sum_probs=79.7
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC
Q 040580 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG 128 (412)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 128 (412)
.+++..-+.+++..-++.-....+- .|.-.+--.|+ +-....-+.+|++++++.++.| ..+|+ +..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeI--N~eCA~AyvLL-AEEEa~Ti~~AE~l~k~ALka~----e~~yr-------~sq 254 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEI--NNECATAYVLL-AEEEATTIVDAERLFKQALKAG----ETIYR-------QSQ 254 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhc--CchhhhHHHhh-hhhhhhhHHHHHHHHHHHHHHH----HHHHh-------hHH
Confidence 3444444555555555555555442 33333322222 2334556788999999988754 22333 111
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHhHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH---HHHHHHHHHhcCCHHHH
Q 040580 129 CFNEIISIIDQVSCRNADLLPEVYS--RAISCFGKQGQLELMENTLKEMVSRGFSVDSAT---GNAFIIYYSRFGSLTEM 203 (412)
Q Consensus 129 ~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a 203 (412)
+...--...+.+.+++. +.-+|- -|.-+-.+.|+..+|.+.|+.+.+. .|=... -..+|.++....-+.++
T Consensus 255 q~qh~~~~~da~~rRDt--nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADv 330 (556)
T KOG3807|consen 255 QCQHQSPQHEAQLRRDT--NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADV 330 (556)
T ss_pred HHhhhccchhhhhhccc--chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122344444443 334554 3444445789999999999988775 232222 33578887777666666
Q ss_pred HHHHHHHHhCC
Q 040580 204 ETAYGRLKRSR 214 (412)
Q Consensus 204 ~~~~~~~~~~~ 214 (412)
..++...-+..
T Consensus 331 qavLakYDdis 341 (556)
T KOG3807|consen 331 QAVLAKYDDIS 341 (556)
T ss_pred HHHHHhhcccc
Confidence 66665554444
No 442
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=39.50 E-value=1.9e+02 Score=24.65 Aligned_cols=23 Identities=4% Similarity=-0.033 Sum_probs=14.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHh
Q 040580 295 RAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 295 ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
.+.++.+.++.+.+..+.+-+.+
T Consensus 198 aLLa~l~~~~~~~~~~iv~WL~~ 220 (246)
T PF07678_consen 198 ALLALLKRGDLEEASPIVRWLIS 220 (246)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 34445555777777777776654
No 443
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.32 E-value=1.2e+02 Score=22.14 Aligned_cols=21 Identities=19% Similarity=-0.113 Sum_probs=12.3
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 040580 89 YANNGFVLEAQVVWEELLSSS 109 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~ 109 (412)
+.+....++|+++.+.|.++|
T Consensus 71 lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 71 LRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHhCcHHHHHHHHHHHHHhC
Confidence 445555566666666666655
No 444
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.31 E-value=4.1e+02 Score=26.66 Aligned_cols=137 Identities=12% Similarity=0.030 Sum_probs=75.3
Q ss_pred hcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHH
Q 040580 55 GRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134 (412)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 134 (412)
.+.|++..+.++-..+....+ ..-..|..|..... ....++...++++-. +.+.....-...+..+.+.+++....
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHHHH
Confidence 456777777777776653322 12233433333221 223443333333221 22333344455566677778888766
Q ss_pred HHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 040580 135 SIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT 201 (412)
Q Consensus 135 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 201 (412)
+.+.. .+.+...-.....+....|+.++|......+-..|-. ....++.++..+.+.|.+.
T Consensus 120 ~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 120 AFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCC
Confidence 63311 1344555566777888888888787777776555433 4556777777777665443
No 445
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.11 E-value=82 Score=22.90 Aligned_cols=47 Identities=11% Similarity=-0.003 Sum_probs=27.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccc
Q 040580 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341 (412)
Q Consensus 295 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 341 (412)
++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444444556666666666666566666555666666665544
No 446
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=39.06 E-value=43 Score=22.73 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=4.2
Q ss_pred CChHHHHHHHH
Q 040580 27 KNGDLARKIIR 37 (412)
Q Consensus 27 ~~~~~A~~~~~ 37 (412)
|+++-...+++
T Consensus 8 ~~~~~~~~ll~ 18 (89)
T PF12796_consen 8 GNLEILKFLLE 18 (89)
T ss_dssp TTHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 33333333333
No 447
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=38.40 E-value=1.5e+02 Score=21.48 Aligned_cols=79 Identities=13% Similarity=0.073 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040580 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138 (412)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 138 (412)
..++|..+.+.+.+.+- ....+--+-+..+.+.|++++|+ ..-. ....||...|-+|.. .+.|..+.+...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQ-CHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHT-TS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhcc-cCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34555555555555432 11111222233345555655551 1111 112455555544432 35555555555555
Q ss_pred HHhhcC
Q 040580 139 QVSCRN 144 (412)
Q Consensus 139 ~m~~~~ 144 (412)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554444
No 448
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=38.30 E-value=2.9e+02 Score=27.07 Aligned_cols=152 Identities=9% Similarity=-0.027 Sum_probs=92.3
Q ss_pred CCCHHhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 040580 76 LPDNSTLCALMLCYANNGF--VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYS 153 (412)
Q Consensus 76 ~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 153 (412)
-|+..+..+++.-....-- -+-+-.++..|.+ -+-|--.+.|...-..--.|+...|.+.+.......-.-.-....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 4677777766655544332 2334445555543 233433333433333334588888888887664221111112455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040580 154 RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230 (412)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 230 (412)
.|.+...+.|-...|..++.+-..-. ....-++-.+-+++.-..+++.|.+.|++..+.. +.+...-+.|...-|
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 56666777778888888888776654 2345567778889999999999999999988764 235556666655544
No 449
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=38.13 E-value=1.5e+02 Score=21.33 Aligned_cols=59 Identities=14% Similarity=0.033 Sum_probs=27.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC--ChHHHHHHHHHHHHcC
Q 040580 224 AVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF--KMKSLQREFMRMSEAG 284 (412)
Q Consensus 224 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~ 284 (412)
.++.-|...+++++|.+.+.++..+...+ ..-..++..+...+ .-+....++..+.+.+
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~~~~~~--~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKLPEQHH--EVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCcchH--HHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 34455555566666666666655442221 33333333333332 2333444555555443
No 450
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.95 E-value=2.5e+02 Score=23.67 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=11.6
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 040580 120 LMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~m 140 (412)
++.++...|+.+.|.++++.+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 455555555566555555554
No 451
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.61 E-value=4.5e+02 Score=26.62 Aligned_cols=201 Identities=7% Similarity=-0.043 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCCCCHHhH-HHHHHHHHhcCChHHHHHHHHHHH-hCCCCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 040580 60 PHLAHQLVNTVKSEGLLPDNSTL-CALMLCYANNGFVLEAQVVWEELL-SSSFVLSVQVLSDLMDAYGRIGCFNEIISII 137 (412)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 137 (412)
+.+.+...+.+.+..-.|+..+- -.+-..|...|++++|+.+--... ...+.++...+.+++.-|... -...+.+.+
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~ 117 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETY 117 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHh
Q ss_pred HHHhhcCCCCCHH---hHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCChHHHHHHHHHHHhcCC-HHHHHH
Q 040580 138 DQVSCRNADLLPE---VYSRAISCFGKQGQLELMENTLKEMVSRG--------FSVDSATGNAFIIYYSRFGS-LTEMET 205 (412)
Q Consensus 138 ~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~-~~~a~~ 205 (412)
..-. .+.+.|+. ..+-++..|...+++..|+-+.-+-.+-+ -.-+....+.++..+....+ -+--.+
T Consensus 118 ~~~~-~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~ 196 (929)
T KOG2062|consen 118 KNPE-QKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNK 196 (929)
T ss_pred cCcc-ccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 040580 206 AYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSY 264 (412)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 264 (412)
+++.+.+.-.+....-|..+.++|.-..+.+.+.++++++....... ..|......|
T Consensus 197 vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~~~l--layQIAFDL~ 253 (929)
T KOG2062|consen 197 VLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKEDDLL--LAYQIAFDLY 253 (929)
T ss_pred HHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcchhh--hHHHHHHHHh
No 452
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.98 E-value=3.1e+02 Score=24.58 Aligned_cols=134 Identities=9% Similarity=0.041 Sum_probs=71.0
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCCCH
Q 040580 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLS-SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR----NADLLP 149 (412)
Q Consensus 75 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~ 149 (412)
++.|..-++.+..+ +..++++-.+..+...+ .|-.--...+-.....|++-||-+.|++.+.+--++ |.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44555555555432 23334444444444443 232333456677778888999998888887765443 333443
Q ss_pred HhHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040580 150 EVYSRAI-SCFGKQGQLELMENTLKEMVSRGFSVDS----ATGNAFIIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 150 ~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~ 212 (412)
..+-.-+ -.|....-+.+-++..+.+.+.|...+. .+|..+- |....++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 3332222 2223333345555556666666654433 3344332 2344677788877766554
No 453
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.83 E-value=5.4e+02 Score=27.27 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHhC
Q 040580 185 ATGNAFIIYYSRFG--SLTEMETAYGRLKRS 213 (412)
Q Consensus 185 ~~~~~li~~~~~~g--~~~~a~~~~~~~~~~ 213 (412)
.-+..++.+|++.+ +++.|+....++++.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34557788888877 788888888887765
No 454
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.81 E-value=1.4e+02 Score=21.74 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=23.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 040580 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA 155 (412)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 155 (412)
+++.+.+|.-.++|+++++-|.++| ..++..-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3455667778888888888888877 5555544433
No 455
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=36.53 E-value=4.4e+02 Score=26.19 Aligned_cols=168 Identities=9% Similarity=-0.017 Sum_probs=94.5
Q ss_pred ChhhHHHHHHHHh-cCCChhHHHHHHHHHHhcCCCCCHH-----hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc
Q 040580 43 GFVDCASLVEDLG-RKKKPHLAHQLVNTVKSEGLLPDNS-----TLCALMLCYANNGFVLEAQVVWEELLSS----SFVL 112 (412)
Q Consensus 43 ~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~ 112 (412)
...++-.+...+. ...+++.|...+++....--+++.. .-..++..+.+.+... |....+..++. +..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4455555666555 5678899999888765432223222 2224555565555555 88777776542 2233
Q ss_pred CHHHHHHH-HHHHHccCCHHHHHHHHHHHhhcCC-CCCHH--hHHHHHHHHH--hcCChHHHHHHHHHHHHCCC------
Q 040580 113 SVQVLSDL-MDAYGRIGCFNEIISIIDQVSCRNA-DLLPE--VYSRAISCFG--KQGQLELMENTLKEMVSRGF------ 180 (412)
Q Consensus 113 ~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~------ 180 (412)
-...|.-+ +..+...+++..|.+.++.+..... ..++. ++-.++.+.. +.+..+.+.+.++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 34444444 3334344788888888887754321 23333 4444444443 44556777777776633211
Q ss_pred ---CCChHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 040580 181 ---SVDSATGNAFIIYYS--RFGSLTEMETAYGRLK 211 (412)
Q Consensus 181 ---~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~ 211 (412)
.|...+|..++..++ ..|+++.+...++++.
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234566666666554 4677667666665554
No 456
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.27 E-value=1.5e+02 Score=20.55 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=21.3
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 100 VVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 100 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
++|+-....|+..|..+|..++....-.=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555554444444444445554443
No 457
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.69 E-value=2.5e+02 Score=23.01 Aligned_cols=62 Identities=15% Similarity=-0.029 Sum_probs=30.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCC--CHHhHHHHHH-HHHhcCC--hHHHHHHHHHHHHC
Q 040580 117 LSDLMDAYGRIGCFNEIISIIDQVSCRNADL--LPEVYSRAIS-CFGKQGQ--LELMENTLKEMVSR 178 (412)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~~~~~g~--~~~a~~~~~~m~~~ 178 (412)
+....-.....|++++|.+-++++.+.--.. -...|..+.. +++..+. +.+|..++.-....
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3444444556677877777776664321000 0123444433 4555543 45555555555443
No 458
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=35.64 E-value=76 Score=23.34 Aligned_cols=49 Identities=10% Similarity=0.003 Sum_probs=32.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccch
Q 040580 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342 (412)
Q Consensus 294 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 342 (412)
.++..+...+..-.|.++++.+.+.|..++..|.-.-++.+.+.|-..+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 4566666666667788888888887777777766666777777765544
No 459
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=35.06 E-value=3.3e+02 Score=24.35 Aligned_cols=118 Identities=8% Similarity=0.029 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh---cCChHHHHHHH
Q 040580 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK---QGQLELMENTL 172 (412)
Q Consensus 96 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~ 172 (412)
+.-+.++++.++.+ +.+....-.+|+.+.+..+.+...+-++++.... +-++..|-..|..... .-.++.+..+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44566777777664 5667777778888888888888888888887664 3456677666655443 23455666555
Q ss_pred HHHHHC------CC----CCChHH-------HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 040580 173 KEMVSR------GF----SVDSAT-------GNAFIIYYSRFGSLTEMETAYGRLKRSRH 215 (412)
Q Consensus 173 ~~m~~~------g~----~p~~~~-------~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 215 (412)
.+..+. |. .+-..+ +.-+.....+.|..+.|..+++-+.+-++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 544321 11 011111 22233334568899999999988887664
No 460
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.84 E-value=2.6e+02 Score=22.95 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=26.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCC--------------CCcHhHHHHHHHHHHccCChhHHHHHHH
Q 040580 259 LLLLSYAGNFKMKSLQREFMRMSEAGF--------------HPDLTTFNIRAVAFSRMSMFWDLHLSLE 313 (412)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~~--------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 313 (412)
+++-.|-+.-++.+...+++.|.+..+ .|--...|.....|.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 344445555555555555555543321 1122233444445555555555555554
No 461
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=34.71 E-value=4e+02 Score=25.13 Aligned_cols=54 Identities=7% Similarity=-0.125 Sum_probs=24.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGP--DLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 294 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
.|+.-|...|++.+|.+.+++ .|++. -...+.+++.+.-+.++-.....++++.
T Consensus 514 ~LLeEY~~~GdisEA~~Cike---LgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c 569 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKE---LGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKEC 569 (645)
T ss_pred HHHHHHHhccchHHHHHHHHH---hCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344445555555555544443 22221 2234445555555555444444444444
No 462
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=34.64 E-value=3.1e+02 Score=23.85 Aligned_cols=152 Identities=16% Similarity=0.044 Sum_probs=81.0
Q ss_pred ccCCCChHHHHHHHHHhhcc-ChhhHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cC
Q 040580 23 QTHPKNGDLARKIIRYRKQE-GFVDCASLVEDLGR----KKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN----NG 93 (412)
Q Consensus 23 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~ 93 (412)
....+++..|...+...... +......+...+.. ..+...|.++|..+-+.|. ......|...+.. ..
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPL 127 (292)
T ss_pred ccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCccc
Confidence 34566677777777766652 33334444444432 3456777777776666653 2233334444433 33
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC-------CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH----hc
Q 040580 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG-------CFNEIISIIDQVSCRNADLLPEVYSRAISCFG----KQ 162 (412)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~ 162 (412)
+..+|...|+...+.|..+...+...+...|..-. +...|...|.+.-..+ ++.....+-..|. -.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 77777788887777774443233334444443321 2235666666666554 2333333333332 23
Q ss_pred CChHHHHHHHHHHHHCCC
Q 040580 163 GQLELMENTLKEMVSRGF 180 (412)
Q Consensus 163 g~~~~a~~~~~~m~~~g~ 180 (412)
.+.++|...|...-+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 366677777777666654
No 463
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=34.27 E-value=4e+02 Score=25.09 Aligned_cols=75 Identities=8% Similarity=0.015 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 040580 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336 (412)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 336 (412)
...|+.-|...|+..+|.+.++++--- +--....+-+++.+..+.|+-...+.++++.-+.|+ .|-+.+-++|.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 344555555556666655554443310 001233455555555555555555555555444332 233444445544
No 464
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=33.95 E-value=1.8e+02 Score=21.03 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=23.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 388899999999999999999998876
No 465
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=33.45 E-value=4.4e+02 Score=27.40 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=7.8
Q ss_pred HHHHHhcccHHHHHHHHH
Q 040580 226 SFTYLKERKFFMLGEFLR 243 (412)
Q Consensus 226 i~~~~~~~~~~~a~~~~~ 243 (412)
+...+..|+.+-+..+++
T Consensus 626 L~~Aa~~g~~~~v~~Ll~ 643 (823)
T PLN03192 626 LCTAAKRNDLTAMKELLK 643 (823)
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 333444444444444443
No 466
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.33 E-value=3.4e+02 Score=23.91 Aligned_cols=165 Identities=12% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHhcCCChH
Q 040580 201 TEMETAYGRLKRSR--------HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMK 271 (412)
Q Consensus 201 ~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~ 271 (412)
+....++..+.+.| ++.|..-+|.++. -+..+.++.-+-+++..... ......++..+..-|++.++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~k--kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLK--KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHH--hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHc----CCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--ccccchHH
Q 040580 272 SLQREFMRMSEA----GFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD--KRLGRNLD 344 (412)
Q Consensus 272 ~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~~~a~ 344 (412)
.+.++..+..+. |.+.| -.+-..|.-.|....-+++-++..+.|+++|-..+...--..-.+... .+++.+|.
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa 212 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAA 212 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHhc-cCCCCCCcccHHHHHHH
Q 040580 345 FGLSKM-NLDDSPVVSTDPYVFEA 367 (412)
Q Consensus 345 ~~~~~m-~~~~~p~~~~~~~li~~ 367 (412)
.++... ..-......+|..+...
T Consensus 213 ~Ll~d~l~tF~S~El~sY~~~vrY 236 (412)
T COG5187 213 ILLSDILPTFESSELISYSRAVRY 236 (412)
T ss_pred HHHHHHhccccccccccHHHHHHH
No 467
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=33.15 E-value=2.1e+02 Score=21.48 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc-----------CChH
Q 040580 28 NGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN-----------GFVL 96 (412)
Q Consensus 28 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----------~~~~ 96 (412)
++.-|..++.+....+ .+...++.+....-.-.++++..++....-.|.. ..+.-++-|.+. +.+.
T Consensus 4 Np~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~e-fl~~yI~~cI~~ce~~kd~~~q~R~VR 80 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQE-FLHMYISNCIKSCESIKDKYMQNRLVR 80 (126)
T ss_pred cHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHH-HHHHHHHHHHHHHHhhcccccccchhh
Confidence 4445555555544333 2555566666666556666666666554433322 222222222111 1122
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 97 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
..-.+.+.+.+.++.-....+..+=..|.+..+..+|-.+|+-+
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 22233444444444433444444444455555555555555544
No 468
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=33.00 E-value=3.7e+02 Score=24.30 Aligned_cols=65 Identities=14% Similarity=0.017 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHcCCCCcHh----HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 040580 269 KMKSLQREFMRMSEAGFHPDLT----TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335 (412)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 335 (412)
-.++++.++.++.+. .|+.. =|-++.......|.+++++.+|++.+..|-+|-...-..+++.+.
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 456777888887765 66653 345667777778888899999999999999887777777776655
No 469
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.00 E-value=1.9e+02 Score=20.82 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=11.2
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 040580 120 LMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~m 140 (412)
++.-|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444455556666666666554
No 470
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=32.65 E-value=4.2e+02 Score=24.83 Aligned_cols=197 Identities=9% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHhcCCChHHH-----HH
Q 040580 204 ETAYGRLKRSRHLID-KEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK--DLGNLLWNLLLLSYAGNFKMKSL-----QR 275 (412)
Q Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a-----~~ 275 (412)
...|..+..-..+|| ...|+.+.+.=-.+.--++..++.+.++.+.. -+-..-..++|.-||+..+.+-. +.
T Consensus 39 ~~~W~~~L~V~~K~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~ 118 (669)
T KOG3636|consen 39 KSDWMRLLGVSMKPNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWIT 118 (669)
T ss_pred HHHHHHHhcccCCCCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHH
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHH--------HHccCChhHHHHHHHHHHh---------CCCCCCHhhHHHHHHHHHhcc
Q 040580 276 EFMRMSEAGFHPDLTTFNIRAVA--------FSRMSMFWDLHLSLEHMKH---------ESVGPDLVTYGCVVDAYLDKR 338 (412)
Q Consensus 276 ~~~~m~~~~~~p~~~~~~~ll~~--------~~~~g~~~~a~~~~~~m~~---------~g~~p~~~~~~~li~~~~~~~ 338 (412)
+++.+.-.+ -|-..+||.+... |...|++-..++++-...+ ..+.||..+.|-+-..++..-
T Consensus 119 lL~pl~~L~-lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~ 197 (669)
T KOG3636|consen 119 LLEPLLLLN-LPRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSM 197 (669)
T ss_pred HHHHHHHhc-CCcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhh
Q ss_pred ccchHHHHHHhccCCCCCCcccHHHHHHHHh--------c-CCcccHHHHHHHhcc----CchHHHHHHHHHHHHc
Q 040580 339 LGRNLDFGLSKMNLDDSPVVSTDPYVFEAFG--------K-GDFHSSSEAFLEFKR----QRKWTYRKLIAVYLKK 401 (412)
Q Consensus 339 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~--------~-~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~ 401 (412)
..+-...+|+..-+...|-..-+-.+|-... + ...+++++.++-|.. .|..-+-+|..-|+.+
T Consensus 198 Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~~K 273 (669)
T KOG3636|consen 198 STEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYSDK 273 (669)
T ss_pred hHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHhhc
No 471
>PRK10941 hypothetical protein; Provisional
Probab=32.59 E-value=3.4e+02 Score=23.65 Aligned_cols=79 Identities=11% Similarity=-0.085 Sum_probs=54.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHH
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG-FSVDSATGNAFIIYY 194 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~ 194 (412)
..+.|-.+|.+.++++.|+++.+.+..-. +-+|.-+-----.|.+.|.+..|..=++...+.- -.|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34667778888999999999999887654 4455555555566888899999988888876542 234455555555444
Q ss_pred H
Q 040580 195 S 195 (412)
Q Consensus 195 ~ 195 (412)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 3
No 472
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.26 E-value=3.2e+02 Score=23.30 Aligned_cols=103 Identities=15% Similarity=0.050 Sum_probs=54.0
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHh-CC-----------CCCCHhhHHHHH
Q 040580 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH-ES-----------VGPDLVTYGCVV 331 (412)
Q Consensus 264 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~g-----------~~p~~~~~~~li 331 (412)
|.+..+.+-..++.+-....++.-+......++ +...|+..+|+.-++.-.. .| -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 333333333333333333445544444444333 4556777777776655432 11 246666666666
Q ss_pred HHHHhccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc
Q 040580 332 DAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK 370 (412)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~ 370 (412)
..|. .+++++|.+.+.++ +.|..|.... +.+++.+..
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~K~ 284 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVVKN 284 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHh
Confidence 6554 45677777777777 7777665432 333444433
No 473
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.09 E-value=1.8e+02 Score=20.26 Aligned_cols=17 Identities=18% Similarity=0.513 Sum_probs=7.4
Q ss_pred HHccCCHHHHHHHHHHH
Q 040580 124 YGRIGCFNEIISIIDQV 140 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m 140 (412)
....|++++|...+++.
T Consensus 51 ~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 33344444444444443
No 474
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=31.34 E-value=4.8e+02 Score=25.04 Aligned_cols=91 Identities=10% Similarity=-0.099 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH---HccCChhHHHHHHHHHHh-CCCCCCHhhHHHHH
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF---SRMSMFWDLHLSLEHMKH-ESVGPDLVTYGCVV 331 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li 331 (412)
.-+.++.-+-+.|-..+|..++..+...- +|+...|.-+|+.- ..+| ...+..+|+.|.. .| .|+..|.-.+
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~ 537 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYM 537 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHH
Confidence 34555666677777888888888877542 45566666666542 2233 6677788888764 57 4666776666
Q ss_pred HHHHhccccchHHHHHHhc
Q 040580 332 DAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m 350 (412)
.--...|..+.+-.++-..
T Consensus 538 ~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 538 KEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HhhccCCCcccccHHHHHH
Confidence 5555677777776665443
No 475
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.25 E-value=1.7e+02 Score=19.86 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=15.9
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcCCCCCHH
Q 040580 121 MDAYGRIGCFNEIISIIDQVSCRNADLLPE 150 (412)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 150 (412)
++.+.++.-.++|+++++-|.++| ..++.
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 344455555666666666666555 34444
No 476
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.23 E-value=1.8e+02 Score=20.18 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=14.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 040580 191 IIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 191 i~~~~~~g~~~~a~~~~~~~~~ 212 (412)
.......|++++|...+++..+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3445566777777777766654
No 477
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=31.18 E-value=1.3e+02 Score=18.47 Aligned_cols=31 Identities=16% Similarity=0.037 Sum_probs=16.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHH
Q 040580 260 LLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF 292 (412)
Q Consensus 260 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 292 (412)
+..++.+.|++++|.+..+.+.+. .|+..-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHH
Confidence 334556666666666666666654 5554433
No 478
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.86 E-value=1.8e+02 Score=19.96 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCH
Q 040580 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 130 (412)
.+.+.+.++++.+..+| ...|.....++-..|..
T Consensus 44 tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 44 SRRDQARQLLIDLETRG----KQAFPAFLSALRETGQT 77 (84)
T ss_pred CHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCch
Confidence 34555555555555544 33455555555444443
No 479
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=30.34 E-value=4.1e+02 Score=24.00 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=100.5
Q ss_pred CCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh-HHHHHH
Q 040580 26 PKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV-LEAQVV 101 (412)
Q Consensus 26 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~ 101 (412)
+.-++.|...|..-... -....--+.+.+++.++-+.+..+-+.+... |. ....+|..++....-. +.+..+
T Consensus 145 S~yye~a~~Ylsg~~~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~l---P~-~vl~aL~~~LEh~~l~~~l~~~l 220 (340)
T PF12069_consen 145 SQYYEHAQAYLSGQLGWDNWQTLGLQGIADICARLDQEDNAQLLRKALPHL---PP-EVLYALCGCLEHQPLPDKLAEAL 220 (340)
T ss_pred chhHHHHHHHHcCCcchhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhhC---Ch-HHHHHHHHHhcCCCCCHHHHHHH
Confidence 33477787776542211 2233445678888888887777666666542 33 3444555555544433 335555
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHH-HHHHhcCChHHHHHHHHHHHHCCC
Q 040580 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI-SCFGKQGQLELMENTLKEMVSRGF 180 (412)
Q Consensus 102 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~ 180 (412)
.+.+... ||......++++.+...........+..+.+.....++++...+. ++.....+.+....+++++-..
T Consensus 221 ~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~-- 295 (340)
T PF12069_consen 221 LERLEQA---PDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQ-- 295 (340)
T ss_pred HHHHHcC---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcc--
Confidence 6666554 899999999999998887777777677776665556666544443 3333445677777777777654
Q ss_pred CCChHHHHHHHHHHHhcC
Q 040580 181 SVDSATGNAFIIYYSRFG 198 (412)
Q Consensus 181 ~p~~~~~~~li~~~~~~g 198 (412)
+|...|+.+..-....-
T Consensus 296 -~~~~lF~qlfaDLv~iP 312 (340)
T PF12069_consen 296 -DDQALFNQLFADLVMIP 312 (340)
T ss_pred -cHHHHHHHHHHHHHhch
Confidence 34566666665555433
No 480
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.57 E-value=5.3e+02 Score=25.00 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=38.6
Q ss_pred HhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC-C------------CCHHhHHHHHHHHHhcCChHHHHHHH
Q 040580 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA-D------------LLPEVYSRAISCFGKQGQLELMENTL 172 (412)
Q Consensus 106 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~------------~~~~~~~~li~~~~~~g~~~~a~~~~ 172 (412)
.+.|+..+......++... .|++..|..++++....+- . ++....-.++.++ ..|+.+.++.++
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~~~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-AAKAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 3456665655555555442 4777777777766543220 1 1111222233332 236666666666
Q ss_pred HHHHHCCCCCC
Q 040580 173 KEMVSRGFSVD 183 (412)
Q Consensus 173 ~~m~~~g~~p~ 183 (412)
++|...|..|.
T Consensus 269 ~~l~~~g~~~~ 279 (509)
T PRK14958 269 TRLVEQGVDFS 279 (509)
T ss_pred HHHHHcCCCHH
Confidence 66666666553
No 481
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.43 E-value=2.5e+02 Score=21.10 Aligned_cols=41 Identities=5% Similarity=0.075 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHH
Q 040580 133 IISIIDQVSCRNADLLPE-VYSRAISCFGKQGQLELMENTLK 173 (412)
Q Consensus 133 a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~ 173 (412)
..++|..|..+++..... .|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555555443333 34444444455555555555543
No 482
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=29.38 E-value=84 Score=22.16 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=25.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCH
Q 040580 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149 (412)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 149 (412)
+..+++.+..+|..+.+.|. .+...+..+...+-.-++.|-- +.+..=++..+.|+|
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gl-l~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~ 92 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGR-CDETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDL 92 (97)
T ss_pred hccCcCcHHHHHHHHHHcCC-CccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCch
Confidence 34455556666666666552 2222323444444444444433 333333333344443
No 483
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.66 E-value=5.3e+02 Score=24.70 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=39.7
Q ss_pred CCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhc-CCCCCHH------------hHHHHHHHHHhcCChHHHHHHHHH
Q 040580 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR-NADLLPE------------VYSRAISCFGKQGQLELMENTLKE 174 (412)
Q Consensus 108 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~------------~~~~li~~~~~~g~~~~a~~~~~~ 174 (412)
.|+.-+......++.. ..|+...+...++.+... +-..+.. ....++.+ .+.++++.|+.++.+
T Consensus 192 egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~s-i~~~d~~~Al~~l~~ 268 (472)
T PRK14962 192 EGIEIDREALSFIAKR--ASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINA-IFNGDVKRVFTVLDD 268 (472)
T ss_pred cCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 4555555555555543 236666666666654321 1011111 11222222 344667777777777
Q ss_pred HHHCCCCCChHHHHHHH
Q 040580 175 MVSRGFSVDSATGNAFI 191 (412)
Q Consensus 175 m~~~g~~p~~~~~~~li 191 (412)
|...|..|....-..+.
T Consensus 269 ll~~Gedp~~i~r~l~~ 285 (472)
T PRK14962 269 VYYSGKDYEVLIQQAIE 285 (472)
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 77666666544333333
No 484
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=28.64 E-value=4.6e+02 Score=23.99 Aligned_cols=54 Identities=9% Similarity=-0.178 Sum_probs=25.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH-ccCChhHHHHHHHHH
Q 040580 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS-RMSMFWDLHLSLEHM 315 (412)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~m 315 (412)
..+.+.|.+..|+++.+-+......-|......+|+.|+ +.++++-..++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 445555555555555555554332223333444444443 344444444444443
No 485
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.55 E-value=3.6e+02 Score=22.71 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=10.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 040580 191 IIYYSRFGSLTEMETAYGRLK 211 (412)
Q Consensus 191 i~~~~~~g~~~~a~~~~~~~~ 211 (412)
|......|+.+.|.+....+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 344445555555555554443
No 486
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=27.95 E-value=1.5e+02 Score=21.57 Aligned_cols=42 Identities=5% Similarity=0.055 Sum_probs=30.9
Q ss_pred CCcccHHHHHHHHhcCCcccHHHHHHHhccCchHHHHHHHHH
Q 040580 356 PVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKLIAV 397 (412)
Q Consensus 356 p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 397 (412)
.+-.+|+.+|+++.+.+.+--.+++.+|.-.|+..+..+.+.
T Consensus 71 ~~GlsYS~fi~gLkkA~I~inRKvLadlAi~d~~aF~~lv~~ 112 (118)
T COG0292 71 ENGLSYSRFINGLKKAGIEIDRKVLADLAINDPAAFAALVEK 112 (118)
T ss_pred HcCCcHHHHHHHHHHcCchhhHHHHHHHHhcCHHHHHHHHHH
Confidence 445568888888877777767777777777788777777654
No 487
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=27.58 E-value=3.8e+02 Score=22.71 Aligned_cols=163 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh--
Q 040580 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF-GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR-- 196 (412)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 196 (412)
+++.+-++++++++.+.++++...+..++..--|.+-.+| ...|....+.+++..+.+..-.-.......++..|-+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc------------------------HHHHHHHHHH-HhcCCCC
Q 040580 197 FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK------------------------FFMLGEFLRD-VGLGRKD 251 (412)
Q Consensus 197 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------------------------~~~a~~~~~~-~~~~~~~ 251 (412)
...+..--.=.-.+....+.|...+-.+.+-.+--.|+ +++|.++... +....|-
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred cchHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040580 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282 (412)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (412)
.=....|.-+--|-..|+.++|.++.+...+
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 488
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=27.46 E-value=4.8e+02 Score=25.25 Aligned_cols=102 Identities=15% Similarity=0.057 Sum_probs=70.1
Q ss_pred HHHHHHHhhcc---ChhhHHH-HHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHH--HhcCChHHHHHHHHHH
Q 040580 32 ARKIIRYRKQE---GFVDCAS-LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY--ANNGFVLEAQVVWEEL 105 (412)
Q Consensus 32 A~~~~~~~~~~---~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m 105 (412)
+..++.++.+. +...|-. .+++..+.|+...|..++.++.. .+.|.....-.++.+- ....++..|.+.+...
T Consensus 47 s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~-~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~ 125 (604)
T COG3107 47 SQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQ-ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKL 125 (604)
T ss_pred HHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhc
Confidence 34444555443 2233443 36778899999999999999987 5777777777777653 4567899999999988
Q ss_pred HhCCCCcC--HHHHHHHHHHHHccCCHHHHH
Q 040580 106 LSSSFVLS--VQVLSDLMDAYGRIGCFNEII 134 (412)
Q Consensus 106 ~~~~~~~~--~~~~~~li~~~~~~~~~~~a~ 134 (412)
.-..++++ ...|-..+.+....|+.-++.
T Consensus 126 ~~~~ls~~Qq~Ry~q~~a~a~ea~~~~~~a~ 156 (604)
T COG3107 126 LPADLSQNQQARYYQARADALEARGDSIDAA 156 (604)
T ss_pred chhhcCHHHHHHHHHHHHHHHhcccchHHHH
Confidence 77766776 455666666666665544333
No 489
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.40 E-value=1.1e+02 Score=16.60 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHH
Q 040580 270 MKSLQREFMRMSEAGFHPDLTTF 292 (412)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~~~~~ 292 (412)
++.|..+|++.... .|++.+|
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHH
Confidence 44555555555543 3554444
No 490
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=27.20 E-value=1.3e+02 Score=22.99 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=25.1
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 040580 291 TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332 (412)
Q Consensus 291 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 332 (412)
|...++.+ -+.|-+.+...++++|++.|+..+..+|+.+++
T Consensus 112 tlGvL~~a-k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 112 TLGVLALA-KSKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred hhHHHHHH-HHcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 34333333 334666666677777777777777777766554
No 491
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=27.18 E-value=2.2e+02 Score=19.79 Aligned_cols=55 Identities=13% Similarity=-0.004 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHH-cCCCCcHhHHHHHHHHHHccCChhHHHHHH
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMSE-AGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 312 (412)
.....+-.-|-+.|-.+.+.+++...++ .| ...|...|+.++..++.-.-|..++
T Consensus 33 ~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg---~~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 33 PAIDNLAYEYDREGLYEQAYQLLRRFIQSEG---KKATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred hHHHHHHhhcccccHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHccchHHHHHHh
Confidence 3444555566777778888888777664 33 3367777888877777665555543
No 492
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=26.93 E-value=1.1e+02 Score=21.09 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 48 ASLVEDLGRKKKPHLAHQLVNTVKS-EGLLPDNSTLCALMLCYANNGFVLEA 98 (412)
Q Consensus 48 ~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a 98 (412)
..+.......|+.+.|..+++.+.+ . ....|..++.++-..|....|
T Consensus 38 e~I~a~~~~~g~~~aa~~Ll~~L~~~r----~~~wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 38 EQILAEERNKGNIAAAEELLDRLERCD----KPGWFQAFLDALRRTGNDDLA 85 (88)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHcCCccHH
Confidence 3334444444777888888888776 3 233466667777666654444
No 493
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.70 E-value=4.5e+02 Score=23.22 Aligned_cols=29 Identities=17% Similarity=-0.049 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
..-..++.+.+...+.+...++++.....
T Consensus 202 ~~k~~~l~aLa~~~d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 202 EEKRRLLSALACSPDPELLKRLLDLLLSN 230 (324)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhhccCCHHHHHHHHHHHcCC
Confidence 55566666666666666666666666653
No 494
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=26.68 E-value=2.7e+02 Score=21.14 Aligned_cols=31 Identities=3% Similarity=-0.086 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 040580 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216 (412)
Q Consensus 186 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 216 (412)
.+..++-.+...|+++.|.++.+...++|..
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 3445666777888888888888888888854
No 495
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=26.57 E-value=1.1e+02 Score=20.30 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=20.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 040580 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 198 (412)
-.|+.+.+.+++++..+.|..|.......+..+..+.|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666555555544554444433
No 496
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=26.39 E-value=2.8e+02 Score=26.00 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=11.4
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 040580 155 AISCFGKQGQLELMENTLKE 174 (412)
Q Consensus 155 li~~~~~~g~~~~a~~~~~~ 174 (412)
+..-++..|.++.|++++++
T Consensus 124 laadhvAAGsFetAm~LLnr 143 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNR 143 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHH
T ss_pred cHHHHHHhCCHHHHHHHHHH
Confidence 34455666666666666654
No 497
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=26.33 E-value=4.8e+02 Score=23.47 Aligned_cols=78 Identities=8% Similarity=0.018 Sum_probs=40.1
Q ss_pred HHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChHHHHHHH-----------HHHHhcCCHHHHH
Q 040580 138 DQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF--SVDSATGNAFI-----------IYYSRFGSLTEME 204 (412)
Q Consensus 138 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li-----------~~~~~~g~~~~a~ 204 (412)
++..+.|+..++++.+.++..+. |+...+..-++.+.--.. ..+......++ .-....|+...|.
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~ 228 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKAL 228 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHH
Confidence 45555666677776666666554 555555555544432211 12222211111 1223456777777
Q ss_pred HHHHHHHhCCCCC
Q 040580 205 TAYGRLKRSRHLI 217 (412)
Q Consensus 205 ~~~~~~~~~~~~~ 217 (412)
.+++.+...|.+|
T Consensus 229 ~~l~~L~~~ge~p 241 (334)
T COG1466 229 RLLRDLLLEGEEP 241 (334)
T ss_pred HHHHHHHHcCCcH
Confidence 7777777766543
No 498
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.96 E-value=5.4e+02 Score=23.95 Aligned_cols=159 Identities=11% Similarity=0.010 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCCH
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSRG--FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS---------RHLIDK 219 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~ 219 (412)
.+.-+-..|...|+++.|++.+.+.+.-- .+-....|-.+|..-.-.|+|........+..+. .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 67778889999999999999999865431 1112344556666667788888877777776654 122333
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCCCC------cchHHHHHHHHHHhcCCChHHHHHH-----HHHHHHcCCCCc
Q 040580 220 EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD------LGNLLWNLLLLSYAGNFKMKSLQRE-----FMRMSEAGFHPD 288 (412)
Q Consensus 220 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~-----~~~m~~~~~~p~ 288 (412)
..+..+..... +++..|.+.|-.......+ |...+....+.+++.-++-+--+.+ |+...+ +.|.
T Consensus 232 ~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle--l~Pq 307 (466)
T KOG0686|consen 232 KCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE--LEPQ 307 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh--cChH
Confidence 34444444433 3677766666543322222 1122333344454444443333333 222222 1333
Q ss_pred HhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 040580 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 289 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
. .. +|..|.. +++...++++++++.
T Consensus 308 l--r~-il~~fy~-sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 308 L--RE-ILFKFYS-SKYASCLELLREIKP 332 (466)
T ss_pred H--HH-HHHHHhh-hhHHHHHHHHHHhcc
Confidence 2 22 3333333 356677777777643
No 499
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.72 E-value=8.8e+02 Score=26.29 Aligned_cols=125 Identities=4% Similarity=-0.083 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC---c-HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHP---D-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 330 (412)
.-|...+..+-+.+-.|.+.++-....+. +.| . ..+++++.+-....|.+-+|...+-.--+ ..--..+...+
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRql 1060 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHH
Confidence 34667788888889999998887766643 222 2 34677888888899988888766543111 11113345566
Q ss_pred HHHHHhccccch------------HHH-HHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHH
Q 040580 331 VDAYLDKRLGRN------------LDF-GLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLE 382 (412)
Q Consensus 331 i~~~~~~~~~~~------------a~~-~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~ 382 (412)
+-.++.+|..+. +.. +++.- +..+.-....|+.|...+.. +++.+|.-++.+
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 666666665543 333 22222 22222233346666666544 999999877765
No 500
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=25.66 E-value=3e+02 Score=20.88 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=13.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcC
Q 040580 119 DLMDAYGRIGCFNEIISIIDQVSCRN 144 (412)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~m~~~~ 144 (412)
.++--+...|+++.|+++.+-..+.|
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcC
Confidence 33444455555555555555555555
Done!