Query 040580
Match_columns 412
No_of_seqs 437 out of 1914
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 15:40:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.6E-36 1.6E-40 290.7 29.4 388 14-408 85-570 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-34 3.7E-39 281.0 28.9 379 21-407 61-535 (597)
3 4g26_A Pentatricopeptide repea 100.0 6E-35 2.1E-39 273.1 23.9 202 135-336 11-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 2.5E-34 8.4E-39 268.9 23.8 190 44-233 26-224 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-27 1.1E-31 216.2 40.4 376 20-403 6-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2E-25 7E-30 204.3 38.7 348 51-408 6-359 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 3.3E-22 1.1E-26 186.5 37.8 357 43-410 25-447 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 2.3E-22 7.8E-27 187.6 34.6 315 9-331 22-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 4.9E-22 1.7E-26 188.4 31.3 371 16-394 9-489 (514)
10 2gw1_A Mitochondrial precursor 99.9 9.2E-22 3.1E-26 186.5 32.0 356 44-408 6-469 (514)
11 3fp2_A TPR repeat-containing p 99.9 7.5E-20 2.6E-24 174.4 29.5 379 16-407 28-481 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 3.9E-18 1.3E-22 153.6 36.7 297 45-350 4-332 (359)
13 3fp2_A TPR repeat-containing p 99.9 4.5E-19 1.5E-23 169.1 32.1 365 9-385 55-490 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 3.5E-18 1.2E-22 153.9 35.4 313 16-336 6-352 (359)
15 1fch_A Peroxisomal targeting s 99.8 5.5E-19 1.9E-23 160.1 26.2 311 27-349 15-355 (368)
16 3hym_B Cell division cycle pro 99.8 1E-17 3.5E-22 149.1 33.1 285 42-334 20-314 (330)
17 3hym_B Cell division cycle pro 99.8 9.8E-18 3.3E-22 149.2 31.2 288 75-368 18-314 (330)
18 3spa_A Mtrpol, DNA-directed RN 99.8 1.5E-20 5.3E-25 181.3 11.3 148 219-370 127-284 (1134)
19 1fch_A Peroxisomal targeting s 99.8 3.7E-18 1.3E-22 154.6 26.4 288 22-314 34-355 (368)
20 3spa_A Mtrpol, DNA-directed RN 99.8 1.3E-20 4.5E-25 181.8 9.2 168 113-280 126-307 (1134)
21 4eqf_A PEX5-related protein; a 99.8 7.8E-18 2.7E-22 152.5 24.6 265 79-349 65-352 (365)
22 4eqf_A PEX5-related protein; a 99.8 8.9E-18 3.1E-22 152.0 23.6 263 44-311 65-349 (365)
23 1b89_A Protein (clathrin heavy 99.8 5.2E-18 1.8E-22 152.0 20.5 284 24-346 14-304 (449)
24 3cv0_A Peroxisome targeting si 99.8 9.4E-17 3.2E-21 142.6 27.3 264 43-312 20-309 (327)
25 2xm6_A Protein corresponding t 99.8 1.1E-14 3.9E-19 137.1 42.5 351 33-410 27-425 (490)
26 3cv0_A Peroxisome targeting si 99.8 6.7E-17 2.3E-21 143.6 25.1 267 78-350 20-312 (327)
27 1b89_A Protein (clathrin heavy 99.8 4.9E-17 1.7E-21 145.8 22.5 351 12-405 31-405 (449)
28 3mkr_A Coatomer subunit epsilo 99.8 8.8E-16 3E-20 134.1 27.8 244 25-282 11-263 (291)
29 3mkr_A Coatomer subunit epsilo 99.8 8.2E-16 2.8E-20 134.3 26.7 274 51-345 6-286 (291)
30 2xm6_A Protein corresponding t 99.7 8.8E-14 3E-18 131.0 40.3 342 17-385 43-431 (490)
31 2ooe_A Cleavage stimulation fa 99.7 1E-14 3.6E-19 138.7 33.6 388 9-407 9-482 (530)
32 4g1t_A Interferon-induced prot 99.7 7.8E-14 2.7E-18 130.6 34.6 353 43-408 50-450 (472)
33 2ooe_A Cleavage stimulation fa 99.7 9.4E-14 3.2E-18 132.1 33.6 357 43-407 12-444 (530)
34 1xi4_A Clathrin heavy chain; a 99.7 7.8E-14 2.7E-18 139.3 33.4 345 14-408 986-1375(1630)
35 4g1t_A Interferon-induced prot 99.7 1E-13 3.4E-18 129.9 29.8 356 14-385 52-458 (472)
36 2pl2_A Hypothetical conserved 99.7 2E-14 6.7E-19 119.9 22.0 196 77-279 3-210 (217)
37 3uq3_A Heat shock protein STI1 99.7 5.9E-14 2E-18 119.9 25.0 221 45-280 6-233 (258)
38 3uq3_A Heat shock protein STI1 99.7 4.6E-14 1.6E-18 120.6 23.3 225 79-317 5-235 (258)
39 2pl2_A Hypothetical conserved 99.6 4.4E-14 1.5E-18 117.8 21.9 198 42-245 3-211 (217)
40 2ho1_A Type 4 fimbrial biogene 99.6 2.5E-13 8.6E-18 115.8 27.2 164 45-211 38-202 (252)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.5E-14 8.5E-19 123.7 21.0 183 22-210 14-203 (275)
42 2vq2_A PILW, putative fimbrial 99.6 3.9E-13 1.3E-17 112.2 26.7 198 81-281 10-209 (225)
43 1xi4_A Clathrin heavy chain; a 99.6 1.7E-12 5.9E-17 129.8 34.1 336 19-402 1055-1415(1630)
44 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.2E-14 1.1E-18 123.0 19.2 248 55-312 16-269 (275)
45 2ho1_A Type 4 fimbrial biogene 99.6 1.1E-12 3.6E-17 111.9 26.9 210 79-294 37-247 (252)
46 1ouv_A Conserved hypothetical 99.6 4.4E-12 1.5E-16 109.6 31.1 223 43-318 5-251 (273)
47 2vq2_A PILW, putative fimbrial 99.6 1.1E-12 3.6E-17 109.6 26.0 203 43-248 7-211 (225)
48 1ouv_A Conserved hypothetical 99.6 6.5E-12 2.2E-16 108.5 30.5 223 78-353 5-252 (273)
49 2q7f_A YRRB protein; TPR, prot 99.6 2E-13 6.9E-18 115.6 20.5 166 43-212 22-187 (243)
50 3u4t_A TPR repeat-containing p 99.6 1.8E-12 6E-17 111.8 26.0 232 47-283 6-250 (272)
51 2q7f_A YRRB protein; TPR, prot 99.6 2.9E-13 1E-17 114.6 20.6 201 77-282 21-221 (243)
52 2h6f_A Protein farnesyltransfe 99.6 5.6E-13 1.9E-17 120.4 23.1 277 13-301 69-365 (382)
53 2h6f_A Protein farnesyltransfe 99.6 1.6E-12 5.4E-17 117.4 25.8 249 79-336 97-365 (382)
54 3u4t_A TPR repeat-containing p 99.6 1.2E-12 4E-17 113.0 23.3 232 80-317 4-249 (272)
55 4a1s_A PINS, partner of inscut 99.5 2.1E-12 7.1E-17 118.6 21.7 272 45-317 49-371 (411)
56 2ond_A Cleavage stimulation fa 99.5 2.8E-11 9.5E-16 106.6 27.7 217 61-281 33-268 (308)
57 3sf4_A G-protein-signaling mod 99.5 1.1E-12 3.9E-17 119.8 19.5 298 43-341 8-364 (406)
58 4a1s_A PINS, partner of inscut 99.5 2.1E-12 7.3E-17 118.5 20.2 270 80-350 49-369 (411)
59 3sf4_A G-protein-signaling mod 99.5 3.5E-12 1.2E-16 116.6 20.8 274 76-350 6-333 (406)
60 3ro2_A PINS homolog, G-protein 99.5 2.9E-12 9.8E-17 113.7 19.6 270 47-317 8-331 (338)
61 3ro2_A PINS homolog, G-protein 99.5 3.1E-12 1.1E-16 113.5 18.8 270 80-350 6-329 (338)
62 3ulq_A Response regulator aspa 99.5 9.2E-12 3.1E-16 113.3 22.3 160 85-244 109-289 (383)
63 3e4b_A ALGK; tetratricopeptide 99.5 7.7E-12 2.6E-16 116.2 22.1 341 19-385 9-386 (452)
64 2ond_A Cleavage stimulation fa 99.5 1.1E-10 3.8E-15 102.7 28.5 217 96-317 33-269 (308)
65 3e4b_A ALGK; tetratricopeptide 99.5 3.7E-12 1.3E-16 118.3 19.8 336 50-410 9-380 (452)
66 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-12 4.8E-17 114.6 14.4 170 43-212 26-223 (311)
67 3vtx_A MAMA; tetratricopeptide 99.4 5E-11 1.7E-15 96.3 21.8 130 79-211 5-134 (184)
68 3vtx_A MAMA; tetratricopeptide 99.4 6.1E-11 2.1E-15 95.7 22.2 167 43-213 4-170 (184)
69 3nf1_A KLC 1, kinesin light ch 99.4 3.6E-12 1.2E-16 112.0 15.1 238 78-316 26-305 (311)
70 4abn_A Tetratricopeptide repea 99.4 2.8E-11 9.5E-16 113.1 21.6 216 60-281 84-319 (474)
71 4abn_A Tetratricopeptide repea 99.4 2.2E-11 7.4E-16 113.9 20.7 212 95-313 84-316 (474)
72 3ulq_A Response regulator aspa 99.4 7.5E-11 2.6E-15 107.2 23.0 294 54-350 22-365 (383)
73 1hz4_A MALT regulatory protein 99.4 1.8E-09 6.3E-14 97.5 29.6 269 49-317 19-321 (373)
74 3as5_A MAMA; tetratricopeptide 99.4 1.3E-10 4.6E-15 93.4 19.5 163 46-212 10-172 (186)
75 3q15_A PSP28, response regulat 99.3 4.3E-10 1.5E-14 102.0 23.2 289 24-316 23-363 (378)
76 3as5_A MAMA; tetratricopeptide 99.3 3.7E-10 1.3E-14 90.7 19.8 164 80-282 9-172 (186)
77 1hz4_A MALT regulatory protein 99.3 1.7E-09 5.8E-14 97.8 25.3 267 83-350 18-319 (373)
78 3q15_A PSP28, response regulat 99.3 2E-09 6.7E-14 97.6 24.6 299 48-350 14-362 (378)
79 4gyw_A UDP-N-acetylglucosamine 99.3 4.6E-10 1.6E-14 109.4 20.5 165 43-212 8-173 (723)
80 4i17_A Hypothetical protein; T 99.2 3.4E-09 1.2E-13 88.6 21.9 196 43-250 6-211 (228)
81 3edt_B KLC 2, kinesin light ch 99.2 3.8E-10 1.3E-14 97.4 16.0 202 80-282 44-280 (283)
82 4gyw_A UDP-N-acetylglucosamine 99.2 1.1E-09 3.6E-14 106.9 20.4 163 78-245 8-171 (723)
83 3edt_B KLC 2, kinesin light ch 99.2 4.9E-10 1.7E-14 96.7 16.4 222 24-246 12-279 (283)
84 4i17_A Hypothetical protein; T 99.2 7.5E-09 2.6E-13 86.5 22.2 205 77-295 5-219 (228)
85 4e6h_A MRNA 3'-END-processing 99.2 8.1E-08 2.8E-12 92.6 31.9 391 14-407 67-560 (679)
86 2fo7_A Synthetic consensus TPR 99.2 2.3E-09 7.9E-14 81.0 16.9 129 46-177 3-131 (136)
87 1qqe_A Vesicular transport pro 99.2 4.6E-09 1.6E-13 91.5 20.7 141 59-214 32-188 (292)
88 4e6h_A MRNA 3'-END-processing 99.1 3.6E-07 1.2E-11 88.2 34.1 362 43-407 65-523 (679)
89 2fo7_A Synthetic consensus TPR 99.1 6E-09 2.1E-13 78.6 17.4 130 81-213 3-132 (136)
90 3mv2_B Coatomer subunit epsilo 99.1 6.3E-08 2.1E-12 83.3 22.0 143 98-245 85-237 (310)
91 1qqe_A Vesicular transport pro 99.0 1.5E-08 5.2E-13 88.2 18.1 175 28-213 32-228 (292)
92 4ga2_A E3 SUMO-protein ligase 99.0 7.1E-09 2.4E-13 80.5 13.8 142 19-163 3-148 (150)
93 3qky_A Outer membrane assembly 99.0 4.1E-08 1.4E-12 83.9 19.8 101 43-144 14-127 (261)
94 3qky_A Outer membrane assembly 99.0 3.3E-08 1.1E-12 84.4 19.1 101 77-178 13-126 (261)
95 3mv2_B Coatomer subunit epsilo 99.0 3.9E-08 1.3E-12 84.6 17.6 182 63-251 85-285 (310)
96 3urz_A Uncharacterized protein 99.0 4.8E-08 1.6E-12 80.4 17.7 161 52-220 12-191 (208)
97 3urz_A Uncharacterized protein 99.0 8.2E-08 2.8E-12 78.9 19.0 183 81-289 6-190 (208)
98 3qou_A Protein YBBN; thioredox 99.0 4.7E-08 1.6E-12 84.8 17.9 177 30-210 103-281 (287)
99 2pzi_A Probable serine/threoni 98.9 2E-08 6.9E-13 98.1 16.6 170 55-231 402-580 (681)
100 2ifu_A Gamma-SNAP; membrane fu 98.9 3.3E-08 1.1E-12 86.8 15.8 165 26-212 4-183 (307)
101 2pzi_A Probable serine/threoni 98.9 3.4E-08 1.2E-12 96.5 17.2 174 90-269 402-583 (681)
102 2r5s_A Uncharacterized protein 98.9 3.1E-08 1.1E-12 79.1 13.5 155 51-209 13-169 (176)
103 3rjv_A Putative SEL1 repeat pr 98.9 2.2E-07 7.4E-12 76.6 19.0 175 31-214 4-198 (212)
104 2r5s_A Uncharacterized protein 98.9 2E-08 7E-13 80.2 11.6 159 16-177 9-172 (176)
105 4ga2_A E3 SUMO-protein ligase 98.9 1.8E-08 6.1E-13 78.2 10.8 142 52-199 5-149 (150)
106 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.8E-07 9.7E-12 76.7 18.9 186 46-250 6-215 (225)
107 2vsy_A XCC0866; transferase, g 98.9 9.7E-08 3.3E-12 91.4 18.0 152 26-180 2-159 (568)
108 2vsy_A XCC0866; transferase, g 98.8 9.6E-08 3.3E-12 91.5 17.6 154 57-214 2-158 (568)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.3E-07 7.8E-12 76.3 17.4 128 46-179 8-151 (213)
110 3qou_A Protein YBBN; thioredox 98.8 1.2E-07 4E-12 82.3 16.2 162 115-280 118-281 (287)
111 3rjv_A Putative SEL1 repeat pr 98.8 9.8E-07 3.3E-11 72.7 21.1 141 62-212 4-157 (212)
112 3dra_A Protein farnesyltransfe 98.8 5.5E-06 1.9E-10 71.8 26.4 133 61-198 50-194 (306)
113 2yhc_A BAMD, UPF0169 lipoprote 98.8 7E-07 2.4E-11 74.3 19.8 185 78-283 3-213 (225)
114 3dra_A Protein farnesyltransfe 98.8 9.8E-06 3.3E-10 70.2 27.1 217 96-317 50-286 (306)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 2.9E-07 1E-11 80.6 17.5 174 26-211 29-222 (307)
116 3u3w_A Transcriptional activat 98.7 8.1E-06 2.8E-10 70.8 25.1 166 119-316 80-264 (293)
117 2uy1_A Cleavage stimulation fa 98.7 2.5E-05 8.5E-10 72.9 29.1 344 27-384 28-411 (493)
118 1a17_A Serine/threonine protei 98.7 7.2E-07 2.4E-11 69.9 16.2 127 46-175 15-143 (166)
119 1na0_A Designed protein CTPR3; 98.7 6.7E-07 2.3E-11 66.1 14.8 96 80-177 10-105 (125)
120 3u3w_A Transcriptional activat 98.7 1.2E-05 4E-10 69.8 24.3 211 101-350 33-263 (293)
121 2qfc_A PLCR protein; TPR, HTH, 98.7 3.6E-06 1.2E-10 73.0 21.0 163 81-243 77-261 (293)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.2E-06 7.4E-11 70.4 18.6 129 81-214 8-151 (213)
123 1a17_A Serine/threonine protei 98.7 1.3E-06 4.3E-11 68.5 16.3 129 80-211 14-144 (166)
124 1na0_A Designed protein CTPR3; 98.7 1.4E-06 4.7E-11 64.4 15.6 112 44-158 9-120 (125)
125 2e2e_A Formate-dependent nitri 98.7 3.2E-07 1.1E-11 73.1 12.3 97 79-177 44-143 (177)
126 2uy1_A Cleavage stimulation fa 98.6 2E-05 6.9E-10 73.6 25.8 352 25-407 6-403 (493)
127 4gco_A Protein STI-1; structur 98.6 1.2E-06 4.2E-11 65.4 14.4 94 82-177 16-109 (126)
128 2vyi_A SGTA protein; chaperone 98.6 1.1E-06 3.9E-11 65.4 14.4 117 45-164 13-129 (131)
129 3gw4_A Uncharacterized protein 98.6 3.1E-07 1.1E-11 74.7 12.0 156 56-212 4-175 (203)
130 4gco_A Protein STI-1; structur 98.6 1.4E-06 4.9E-11 65.0 14.4 98 45-144 14-111 (126)
131 2lni_A Stress-induced-phosphop 98.6 1.5E-06 5.2E-11 65.1 14.7 99 78-178 15-113 (133)
132 2fbn_A 70 kDa peptidylprolyl i 98.6 1.9E-07 6.6E-12 76.0 10.1 158 18-177 9-185 (198)
133 3gw4_A Uncharacterized protein 98.6 7.8E-07 2.7E-11 72.4 13.7 151 25-175 4-173 (203)
134 2lni_A Stress-induced-phosphop 98.6 1.3E-06 4.6E-11 65.4 13.7 118 43-163 15-132 (133)
135 2vyi_A SGTA protein; chaperone 98.6 1.8E-06 6.3E-11 64.3 14.3 118 79-199 12-129 (131)
136 2c2l_A CHIP, carboxy terminus 98.6 5.3E-07 1.8E-11 77.8 12.4 97 79-177 4-100 (281)
137 3q7a_A Farnesyltransferase alp 98.6 8.3E-05 2.8E-09 65.2 26.2 176 53-233 63-256 (349)
138 3gyz_A Chaperone protein IPGC; 98.6 1.1E-06 3.9E-11 67.8 12.6 96 81-178 38-133 (151)
139 2c2l_A CHIP, carboxy terminus 98.6 8.5E-07 2.9E-11 76.6 13.2 193 43-246 3-197 (281)
140 2qfc_A PLCR protein; TPR, HTH, 98.6 2.5E-05 8.6E-10 67.7 22.5 124 193-316 124-264 (293)
141 1p5q_A FKBP52, FK506-binding p 98.5 2.3E-06 7.7E-11 75.9 15.5 124 43-168 146-283 (336)
142 2e2e_A Formate-dependent nitri 98.5 1.8E-06 6.2E-11 68.7 13.3 122 90-214 21-145 (177)
143 4f3v_A ESX-1 secretion system 98.5 2.8E-06 9.5E-11 72.1 14.9 187 91-283 18-237 (282)
144 3q7a_A Farnesyltransferase alp 98.5 3E-05 1E-09 68.1 21.8 175 22-200 63-258 (349)
145 2vgx_A Chaperone SYCD; alterna 98.5 6.7E-07 2.3E-11 69.0 10.0 94 82-177 24-117 (148)
146 3gyz_A Chaperone protein IPGC; 98.5 1.9E-06 6.4E-11 66.6 12.0 103 113-219 35-137 (151)
147 2vgx_A Chaperone SYCD; alterna 98.5 1.5E-06 5.1E-11 67.0 10.9 110 101-213 9-118 (148)
148 4f3v_A ESX-1 secretion system 98.5 1.3E-05 4.4E-10 68.1 17.4 188 126-318 18-237 (282)
149 1elw_A TPR1-domain of HOP; HOP 98.4 1.3E-05 4.5E-10 58.2 15.3 95 81-177 6-100 (118)
150 3upv_A Heat shock protein STI1 98.4 6.9E-06 2.3E-10 61.1 13.7 95 81-177 6-100 (126)
151 1elw_A TPR1-domain of HOP; HOP 98.4 1.3E-05 4.4E-10 58.3 15.0 110 44-156 4-113 (118)
152 2kck_A TPR repeat; tetratricop 98.4 3.7E-06 1.3E-10 60.7 11.6 94 46-141 8-104 (112)
153 4b4t_Q 26S proteasome regulato 98.4 0.00014 4.8E-09 66.6 24.8 159 86-244 11-200 (434)
154 2kck_A TPR repeat; tetratricop 98.4 6.1E-06 2.1E-10 59.5 12.4 101 78-180 5-108 (112)
155 1p5q_A FKBP52, FK506-binding p 98.4 1E-05 3.5E-10 71.7 16.0 147 58-210 127-291 (336)
156 3q49_B STIP1 homology and U bo 98.4 1.2E-05 4E-10 60.7 14.1 98 78-177 8-105 (137)
157 2xcb_A PCRH, regulatory protei 98.4 6.7E-06 2.3E-10 62.7 12.7 93 83-177 22-114 (142)
158 2xcb_A PCRH, regulatory protei 98.4 5.4E-06 1.8E-10 63.3 12.2 100 43-144 17-116 (142)
159 2dba_A Smooth muscle cell asso 98.4 2.6E-05 8.8E-10 59.4 15.5 99 43-144 27-129 (148)
160 2fbn_A 70 kDa peptidylprolyl i 98.3 9.8E-07 3.3E-11 71.7 7.3 145 53-202 13-174 (198)
161 1elr_A TPR2A-domain of HOP; HO 98.3 8.1E-06 2.8E-10 60.7 12.0 95 82-177 7-107 (131)
162 3sz7_A HSC70 cochaperone (SGT) 98.3 1.9E-05 6.6E-10 61.7 14.1 97 79-177 11-107 (164)
163 3q49_B STIP1 homology and U bo 98.3 1.4E-05 4.8E-10 60.2 12.8 100 42-143 7-106 (137)
164 3upv_A Heat shock protein STI1 98.3 1.7E-05 5.9E-10 58.8 13.1 99 44-144 4-102 (126)
165 4gcn_A Protein STI-1; structur 98.3 1.9E-05 6.5E-10 58.9 12.7 57 83-140 12-68 (127)
166 3dss_A Geranylgeranyl transfer 98.3 0.0018 6.1E-08 56.5 27.0 233 55-317 40-303 (331)
167 1elr_A TPR2A-domain of HOP; HO 98.3 1.4E-05 4.9E-10 59.3 11.9 112 44-158 4-121 (131)
168 3sz7_A HSC70 cochaperone (SGT) 98.3 2.3E-05 7.7E-10 61.3 13.4 100 43-144 10-109 (164)
169 4b4t_Q 26S proteasome regulato 98.3 0.0001 3.4E-09 67.6 19.7 194 51-244 11-241 (434)
170 2dba_A Smooth muscle cell asso 98.2 5.9E-05 2E-09 57.4 15.4 99 77-178 26-128 (148)
171 4gcn_A Protein STI-1; structur 98.2 3.2E-05 1.1E-09 57.6 13.1 106 114-222 8-119 (127)
172 1hxi_A PEX5, peroxisome target 98.2 1.6E-05 5.6E-10 58.6 11.2 88 87-176 25-112 (121)
173 1hxi_A PEX5, peroxisome target 98.2 2E-05 6.9E-10 58.2 10.6 96 46-143 19-114 (121)
174 2xev_A YBGF; tetratricopeptide 98.1 8.2E-05 2.8E-09 55.2 13.6 89 87-177 10-104 (129)
175 3k9i_A BH0479 protein; putativ 98.1 8.3E-06 2.8E-10 59.8 7.7 85 57-142 3-89 (117)
176 1wao_1 Serine/threonine protei 98.1 1.4E-05 4.8E-10 74.4 10.8 117 54-173 16-134 (477)
177 2xev_A YBGF; tetratricopeptide 98.1 0.00011 3.9E-09 54.4 13.9 96 47-144 5-106 (129)
178 3ro3_A PINS homolog, G-protein 98.1 2.2E-05 7.6E-10 60.6 10.3 95 46-140 11-115 (164)
179 3k9i_A BH0479 protein; putativ 98.1 1.5E-05 5.1E-10 58.4 8.2 87 91-178 2-90 (117)
180 3dss_A Geranylgeranyl transfer 98.1 0.0048 1.6E-07 53.8 25.6 168 25-196 41-239 (331)
181 3rkv_A Putative peptidylprolyl 98.1 0.00011 3.6E-09 57.3 13.3 64 114-178 63-126 (162)
182 1wao_1 Serine/threonine protei 98.0 1.3E-05 4.4E-10 74.6 9.1 124 13-138 6-134 (477)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.8E-05 2.7E-09 69.0 14.3 124 43-168 267-404 (457)
184 3ro3_A PINS homolog, G-protein 98.0 5.5E-05 1.9E-09 58.3 11.5 133 80-212 10-157 (164)
185 1ihg_A Cyclophilin 40; ppiase 98.0 9.6E-05 3.3E-09 66.3 12.8 96 46-142 225-335 (370)
186 2if4_A ATFKBP42; FKBP-like, al 97.9 4.8E-05 1.6E-09 67.4 10.5 114 44-177 179-292 (338)
187 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00018 6.1E-09 66.6 14.4 122 79-204 268-405 (457)
188 1ihg_A Cyclophilin 40; ppiase 97.9 0.00017 5.7E-09 64.7 13.8 137 81-239 225-361 (370)
189 3rkv_A Putative peptidylprolyl 97.9 0.00019 6.6E-09 55.8 12.3 99 45-144 12-127 (162)
190 3n71_A Histone lysine methyltr 97.8 0.00018 6.2E-09 66.7 11.8 123 90-212 320-463 (490)
191 1klx_A Cysteine rich protein B 97.7 0.00073 2.5E-08 50.9 12.5 110 59-179 10-127 (138)
192 1dce_A Protein (RAB geranylger 97.7 0.0096 3.3E-07 56.5 22.6 174 56-234 41-241 (567)
193 3n71_A Histone lysine methyltr 97.7 0.00017 5.7E-09 66.9 10.3 121 58-178 323-464 (490)
194 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00021 7.2E-09 63.2 9.9 148 80-248 180-328 (338)
195 2hr2_A Hypothetical protein; a 97.7 0.00089 3.1E-08 51.3 12.0 94 83-176 15-129 (159)
196 1na3_A Designed protein CTPR2; 97.6 0.0007 2.4E-08 46.3 10.6 61 81-142 11-71 (91)
197 2hr2_A Hypothetical protein; a 97.6 0.00078 2.7E-08 51.6 11.4 96 46-142 13-130 (159)
198 2l6j_A TPR repeat-containing p 97.6 0.00028 9.4E-09 50.6 8.7 62 80-142 5-66 (111)
199 1dce_A Protein (RAB geranylger 97.6 0.0094 3.2E-07 56.5 21.3 174 93-272 43-244 (567)
200 2kat_A Uncharacterized protein 97.6 0.00055 1.9E-08 49.6 10.1 61 79-140 19-79 (115)
201 1klx_A Cysteine rich protein B 97.6 0.0021 7.3E-08 48.3 13.6 110 94-214 10-127 (138)
202 2kat_A Uncharacterized protein 97.5 0.00085 2.9E-08 48.5 10.2 80 97-178 3-82 (115)
203 2l6j_A TPR repeat-containing p 97.5 0.00051 1.7E-08 49.1 8.7 65 113-178 3-67 (111)
204 1na3_A Designed protein CTPR2; 97.5 0.0013 4.5E-08 44.9 10.1 83 43-127 8-90 (91)
205 1zu2_A Mitochondrial import re 97.4 0.00053 1.8E-08 52.4 7.9 96 93-192 16-132 (158)
206 3ma5_A Tetratricopeptide repea 97.2 0.0023 7.9E-08 44.9 9.0 61 114-175 7-67 (100)
207 3ma5_A Tetratricopeptide repea 97.1 0.0026 9E-08 44.6 8.6 64 78-142 6-69 (100)
208 1zu2_A Mitochondrial import re 97.1 0.0014 4.8E-08 50.0 6.8 96 58-157 16-132 (158)
209 3mkq_A Coatomer beta'-subunit; 97.0 0.048 1.6E-06 54.2 19.7 152 53-243 608-760 (814)
210 3mkq_A Coatomer beta'-subunit; 96.9 0.016 5.6E-07 57.5 15.4 151 25-210 611-762 (814)
211 2kc7_A BFR218_protein; tetratr 96.7 0.01 3.5E-07 41.1 8.6 55 88-143 9-64 (99)
212 3qww_A SET and MYND domain-con 96.7 0.014 4.6E-07 53.2 11.1 84 93-176 312-409 (433)
213 3ly7_A Transcriptional activat 96.7 0.042 1.4E-06 48.3 13.6 142 76-222 191-346 (372)
214 3qww_A SET and MYND domain-con 96.7 0.0081 2.8E-07 54.7 9.5 85 128-212 312-410 (433)
215 3qwp_A SET and MYND domain-con 96.6 0.018 6.2E-07 52.4 11.3 86 91-176 299-398 (429)
216 3qwp_A SET and MYND domain-con 96.5 0.019 6.5E-07 52.3 11.2 92 121-212 294-399 (429)
217 3ly7_A Transcriptional activat 96.5 0.056 1.9E-06 47.5 13.5 72 253-328 276-347 (372)
218 3mkq_B Coatomer subunit alpha; 96.3 0.17 6E-06 39.1 13.5 96 56-172 17-112 (177)
219 2kc7_A BFR218_protein; tetratr 96.2 0.04 1.4E-06 38.0 8.9 58 120-178 6-64 (99)
220 1pc2_A Mitochondria fission pr 96.2 0.088 3E-06 39.7 11.0 80 96-177 15-99 (152)
221 3bee_A Putative YFRE protein; 96.1 0.055 1.9E-06 37.2 9.2 64 78-142 5-71 (93)
222 3bee_A Putative YFRE protein; 96.0 0.11 3.7E-06 35.7 10.2 67 111-178 3-72 (93)
223 2v5f_A Prolyl 4-hydroxylase su 95.7 0.16 5.5E-06 35.6 10.5 61 81-141 7-73 (104)
224 3mkq_B Coatomer subunit alpha; 95.6 0.57 1.9E-05 36.3 15.4 23 151-173 36-58 (177)
225 1wy6_A Hypothetical protein ST 95.5 0.48 1.6E-05 34.7 14.2 46 57-105 20-65 (172)
226 1pc2_A Mitochondria fission pr 95.5 0.2 6.8E-06 37.8 10.6 83 203-288 17-103 (152)
227 1wy6_A Hypothetical protein ST 95.5 0.49 1.7E-05 34.6 14.6 147 82-250 8-156 (172)
228 2v5f_A Prolyl 4-hydroxylase su 95.3 0.17 5.7E-06 35.5 9.3 66 44-109 5-76 (104)
229 4b4t_P 26S proteasome regulato 94.9 2.1 7.3E-05 38.9 18.2 50 58-107 30-84 (445)
230 4h7y_A Dual specificity protei 94.8 0.83 2.8E-05 34.1 11.7 30 43-72 12-47 (161)
231 3u64_A Protein TP_0956; tetrat 94.7 0.37 1.3E-05 40.6 10.9 93 95-189 179-282 (301)
232 4h7y_A Dual specificity protei 94.5 0.37 1.3E-05 36.0 9.3 35 78-113 12-52 (161)
233 3u64_A Protein TP_0956; tetrat 94.0 0.62 2.1E-05 39.3 10.8 85 60-146 179-272 (301)
234 1nzn_A CGI-135 protein, fissio 93.6 0.65 2.2E-05 33.6 9.0 80 96-177 18-102 (126)
235 4fhn_B Nucleoporin NUP120; pro 93.3 2.4 8.3E-05 43.8 16.3 211 189-407 817-1084(1139)
236 2ff4_A Probable regulatory pro 92.8 0.59 2E-05 41.8 9.7 127 78-223 111-249 (388)
237 1v54_E Cytochrome C oxidase po 92.8 0.68 2.3E-05 31.8 7.4 40 102-141 33-72 (109)
238 1nzn_A CGI-135 protein, fissio 92.6 1.4 4.6E-05 31.9 9.5 25 259-283 79-103 (126)
239 4b4t_P 26S proteasome regulato 92.6 6 0.0002 36.0 20.4 185 26-212 29-246 (445)
240 1v54_E Cytochrome C oxidase po 92.4 0.45 1.5E-05 32.6 6.2 46 270-315 26-71 (109)
241 4gns_B Protein CSD3, chitin bi 92.0 1.1 3.8E-05 43.6 10.8 125 48-175 252-397 (754)
242 2ff4_A Probable regulatory pro 91.9 1.3 4.6E-05 39.5 10.8 76 116-192 173-253 (388)
243 2y69_E Cytochrome C oxidase su 90.2 1.4 4.9E-05 32.0 7.2 64 304-367 68-131 (152)
244 4gns_B Protein CSD3, chitin bi 89.4 2.6 8.8E-05 41.0 10.8 52 228-280 346-397 (754)
245 2y69_E Cytochrome C oxidase su 89.3 4.9 0.00017 29.3 9.7 60 132-192 71-130 (152)
246 4fhn_B Nucleoporin NUP120; pro 89.2 23 0.00077 36.7 18.7 27 114-140 842-868 (1139)
247 3lvg_A Clathrin heavy chain 1; 89.0 0.00023 7.7E-09 64.0 -15.9 238 116-381 56-315 (624)
248 3lvg_A Clathrin heavy chain 1; 89.0 0.0023 8E-08 57.6 -9.5 243 13-274 54-324 (624)
249 4ady_A RPN2, 26S proteasome re 84.9 34 0.0012 34.3 23.6 255 89-351 384-656 (963)
250 4b4t_R RPN7, 26S proteasome re 84.8 8.1 0.00028 34.9 11.0 99 115-213 132-237 (429)
251 1wdy_A 2-5A-dependent ribonucl 84.5 3.3 0.00011 34.5 7.9 9 53-61 11-19 (285)
252 2p58_C Putative type III secre 84.1 5.3 0.00018 27.3 6.8 87 267-361 20-106 (116)
253 3esl_A Checkpoint serine/threo 82.5 12 0.00042 29.4 9.5 56 127-182 92-148 (202)
254 3ffl_A Anaphase-promoting comp 82.3 10 0.00036 28.8 8.7 59 117-175 23-89 (167)
255 4ady_A RPN2, 26S proteasome re 80.9 48 0.0017 33.2 27.5 259 124-390 384-663 (963)
256 3o48_A Mitochondria fission 1 80.7 12 0.00043 27.1 8.3 20 262-281 86-105 (134)
257 3eu9_A Huntingtin-interacting 79.0 3.2 0.00011 33.5 5.6 7 195-201 117-123 (240)
258 3ffl_A Anaphase-promoting comp 78.9 11 0.00036 28.8 7.8 61 46-106 22-90 (167)
259 2uwj_G Type III export protein 78.7 5 0.00017 27.4 5.2 87 267-361 19-105 (115)
260 1wdy_A 2-5A-dependent ribonucl 78.4 10 0.00035 31.4 8.8 47 302-348 192-240 (285)
261 1zbp_A Hypothetical protein VP 77.8 12 0.0004 31.1 8.4 51 90-141 8-58 (273)
262 4a1g_A Mitotic checkpoint seri 77.2 20 0.0007 26.8 8.9 50 133-182 84-134 (152)
263 1k1a_A B-cell lymphoma 3-encod 77.1 5.2 0.00018 32.3 6.4 86 51-140 13-102 (241)
264 4b4t_R RPN7, 26S proteasome re 76.9 32 0.0011 31.0 12.0 99 80-178 132-237 (429)
265 2uwj_G Type III export protein 76.9 15 0.00052 25.1 7.5 77 58-144 20-98 (115)
266 3eiq_C Programmed cell death p 76.5 38 0.0013 29.5 12.8 67 256-323 219-287 (358)
267 2p58_C Putative type III secre 76.3 16 0.00054 25.0 8.4 77 58-144 21-99 (116)
268 4g8k_A 2-5A-dependent ribonucl 76.1 29 0.00099 29.7 11.3 44 49-96 27-73 (337)
269 1zbp_A Hypothetical protein VP 74.9 23 0.0008 29.4 9.4 55 262-317 5-59 (273)
270 1k1a_A B-cell lymphoma 3-encod 74.9 13 0.00043 29.9 8.2 14 126-139 18-31 (241)
271 2zu6_B Programmed cell death p 74.8 39 0.0013 28.8 11.8 68 255-323 167-236 (307)
272 2wpv_A GET4, UPF0363 protein Y 73.6 42 0.0014 28.6 19.3 114 45-173 34-158 (312)
273 1y8m_A FIS1; mitochondria, unk 72.9 26 0.00088 25.9 11.1 25 259-283 82-106 (144)
274 2wvi_A Mitotic checkpoint seri 71.3 30 0.001 26.3 8.6 50 133-182 79-129 (164)
275 3ltm_A Alpha-REP4; protein eng 69.8 38 0.0013 26.5 14.6 188 27-234 16-203 (211)
276 3txn_A 26S proteasome regulato 67.9 65 0.0022 28.5 22.8 24 189-212 104-127 (394)
277 3eiq_C Programmed cell death p 66.6 66 0.0022 28.1 15.4 68 221-289 219-288 (358)
278 3hra_A Ankyrin repeat family p 66.2 16 0.00053 28.4 6.7 12 126-137 14-25 (201)
279 2d2s_A Exocyst complex compone 65.5 30 0.001 28.1 8.2 88 50-140 24-117 (235)
280 1qsa_A Protein (soluble lytic 64.1 1E+02 0.0034 29.3 25.4 51 265-316 296-346 (618)
281 2nsz_A Programmed cell death p 63.0 40 0.0014 24.3 7.7 65 117-182 10-76 (129)
282 2ion_A PDCD4, programmed cell 62.5 46 0.0016 24.8 9.1 63 223-286 13-77 (152)
283 3lpz_A GET4 (YOR164C homolog); 61.0 81 0.0028 27.2 20.7 134 46-198 37-181 (336)
284 3txn_A 26S proteasome regulato 60.6 91 0.0031 27.6 22.6 129 46-175 21-165 (394)
285 3l6a_A Eukaryotic translation 59.0 88 0.003 27.3 10.5 171 221-402 14-190 (364)
286 3utm_A Tankyrase-1; tankyrase, 58.8 57 0.0019 27.7 9.5 296 83-403 25-351 (351)
287 3esl_A Checkpoint serine/threo 58.8 65 0.0022 25.4 10.2 56 92-147 92-148 (202)
288 3jxi_A Vanilloid receptor-rela 58.8 11 0.00038 30.8 4.7 56 51-106 9-73 (260)
289 2d2s_A Exocyst complex compone 58.5 69 0.0023 26.0 9.1 88 85-175 24-117 (235)
290 3t8k_A Uncharacterized protein 58.2 47 0.0016 25.5 8.0 27 87-113 43-69 (186)
291 3hra_A Ankyrin repeat family p 58.2 17 0.00057 28.2 5.4 80 159-244 12-94 (201)
292 2zu6_B Programmed cell death p 57.6 88 0.003 26.6 12.7 68 221-289 168-237 (307)
293 3kea_A K1L; tropism, ANK repea 57.6 15 0.00051 30.7 5.3 9 281-289 215-223 (285)
294 3ygs_P Procaspase 9; apoptosis 57.3 18 0.0006 24.7 4.6 36 59-98 52-87 (97)
295 3o48_A Mitochondria fission 1 57.2 53 0.0018 23.9 10.9 67 111-177 37-106 (134)
296 1qsa_A Protein (soluble lytic 56.8 1.4E+02 0.0046 28.4 27.3 113 129-245 229-345 (618)
297 2keb_A DNA polymerase subunit 56.3 44 0.0015 22.6 6.6 57 272-330 27-88 (101)
298 3eu9_A Huntingtin-interacting 56.0 9.7 0.00033 30.5 3.8 15 85-99 45-59 (240)
299 2ion_A PDCD4, programmed cell 55.8 34 0.0012 25.5 6.4 65 117-182 12-78 (152)
300 2nsz_A Programmed cell death p 55.8 54 0.0019 23.6 10.3 63 223-286 11-75 (129)
301 3t8k_A Uncharacterized protein 55.7 24 0.00081 27.3 5.8 91 23-114 13-109 (186)
302 1n11_A Ankyrin; clathrin, BAND 55.6 27 0.00091 31.2 7.0 206 18-243 16-233 (437)
303 4aez_C MAD3, mitotic spindle c 55.2 19 0.00065 28.9 5.1 52 167-218 132-184 (223)
304 3b7b_A Euchromatic histone-lys 55.1 15 0.00053 29.3 4.9 16 301-316 219-234 (237)
305 3jxi_A Vanilloid receptor-rela 55.0 7.6 0.00026 31.8 3.0 55 86-140 9-72 (260)
306 2fu4_A Ferric uptake regulatio 54.5 40 0.0014 21.7 6.8 61 279-340 7-68 (83)
307 3b7b_A Euchromatic histone-lys 54.0 27 0.00091 27.9 6.2 14 370-383 220-233 (237)
308 1ug3_A EIF4GI, eukaryotic prot 53.8 35 0.0012 29.5 7.1 24 221-244 143-166 (339)
309 2fe3_A Peroxide operon regulat 53.0 52 0.0018 24.2 7.1 63 68-131 11-73 (145)
310 1mzb_A Ferric uptake regulatio 52.7 52 0.0018 23.8 6.9 63 279-342 8-71 (136)
311 3ltj_A Alpharep-4; protein eng 52.7 77 0.0026 24.4 15.7 188 26-233 10-197 (201)
312 3kea_A K1L; tropism, ANK repea 52.6 36 0.0012 28.3 7.0 166 26-209 9-183 (285)
313 2wvi_A Mitotic checkpoint seri 52.5 51 0.0018 25.0 6.8 52 98-149 79-131 (164)
314 1mzb_A Ferric uptake regulatio 52.2 51 0.0017 23.9 6.8 61 174-235 8-69 (136)
315 3ltm_A Alpha-REP4; protein eng 52.0 81 0.0028 24.5 20.6 185 61-268 18-202 (211)
316 2fu4_A Ferric uptake regulatio 51.8 45 0.0015 21.4 6.6 59 174-233 7-66 (83)
317 1y8m_A FIS1; mitochondria, unk 50.2 74 0.0025 23.4 12.7 24 154-177 82-105 (144)
318 2r9g_A AAA ATPase, central reg 50.0 91 0.0031 24.5 9.1 62 153-215 15-84 (204)
319 2w57_A Ferric uptake regulatio 49.6 58 0.002 24.1 6.9 64 278-342 6-70 (150)
320 2xig_A Ferric uptake regulatio 49.4 71 0.0024 23.6 7.3 61 173-234 16-76 (150)
321 4ets_A Ferric uptake regulatio 49.0 65 0.0022 24.2 7.1 70 61-131 14-86 (162)
322 3lpz_A GET4 (YOR164C homolog); 48.8 1.3E+02 0.0045 25.9 22.6 167 81-281 37-214 (336)
323 4b4t_S RPN3, 26S proteasome re 48.3 1.7E+02 0.0057 27.1 10.7 66 113-178 230-299 (523)
324 3aji_A 26S proteasome non-ATPa 48.2 33 0.0011 27.1 5.9 17 123-139 12-28 (231)
325 2fe3_A Peroxide operon regulat 47.8 80 0.0027 23.1 7.8 59 175-234 13-71 (145)
326 2xig_A Ferric uptake regulatio 46.8 76 0.0026 23.4 7.1 62 68-130 16-77 (150)
327 3ltj_A Alpharep-4; protein eng 46.2 98 0.0034 23.7 21.4 171 77-267 26-196 (201)
328 3eyy_A Putative iron uptake re 46.1 55 0.0019 24.1 6.2 60 173-234 8-67 (145)
329 2r9g_A AAA ATPase, central reg 44.8 1.1E+02 0.0038 24.0 9.2 83 260-343 17-107 (204)
330 2qx5_A Nucleoporin NIC96; mRNA 44.0 2.2E+02 0.0074 27.3 11.2 44 116-161 155-198 (661)
331 2wpv_A GET4, UPF0363 protein Y 42.6 1.6E+02 0.0054 25.1 22.1 166 82-281 36-215 (312)
332 3mwm_A ZUR, putative metal upt 42.6 50 0.0017 24.1 5.4 46 49-94 18-63 (139)
333 2w57_A Ferric uptake regulatio 42.2 87 0.003 23.1 6.8 60 175-235 8-68 (150)
334 2o03_A Probable zinc uptake re 41.7 53 0.0018 23.6 5.4 45 50-94 16-60 (131)
335 2ijq_A Hypothetical protein; s 41.3 1.1E+02 0.0038 23.0 8.2 61 151-212 35-103 (161)
336 3ljn_A Hypothetical protein; a 40.9 54 0.0018 28.3 6.4 46 299-349 218-266 (364)
337 3eyy_A Putative iron uptake re 40.8 76 0.0026 23.3 6.3 58 139-198 9-66 (145)
338 1ug3_A EIF4GI, eukaryotic prot 40.2 1.8E+02 0.0061 25.0 11.8 25 47-71 14-38 (339)
339 4fke_A Aminopeptidase N; zinc 40.0 3E+02 0.01 27.6 17.5 92 118-212 690-786 (909)
340 4a1g_A Mitotic checkpoint seri 39.9 1.1E+02 0.0039 22.7 10.1 50 98-147 84-134 (152)
341 4aez_C MAD3, mitotic spindle c 39.7 81 0.0028 25.3 6.4 84 63-149 96-185 (223)
342 4g8k_A 2-5A-dependent ribonucl 39.7 82 0.0028 26.7 7.3 39 173-218 290-328 (337)
343 2p1h_A APAF-1, apoptotic prote 39.1 53 0.0018 21.9 4.7 61 34-98 26-86 (94)
344 2b7e_A PRE-mRNA processing pro 37.9 26 0.00088 21.3 2.5 29 166-194 3-31 (59)
345 1q2z_A ATP-dependent DNA helic 37.9 30 0.001 24.6 3.4 50 129-181 42-95 (120)
346 2ijq_A Hypothetical protein; s 37.3 1.3E+02 0.0045 22.6 7.5 60 47-107 36-103 (161)
347 2keb_A DNA polymerase subunit 36.3 1E+02 0.0034 20.9 7.0 33 61-93 26-58 (101)
348 4ets_A Ferric uptake regulatio 36.2 1.3E+02 0.0046 22.5 7.1 59 176-235 25-85 (162)
349 1wgl_A TOLL-interacting protei 36.1 53 0.0018 19.8 3.8 22 162-183 36-57 (59)
350 3ctd_A Putative ATPase, AAA fa 35.5 1.6E+02 0.0056 23.2 8.0 65 151-215 34-106 (213)
351 1n11_A Ankyrin; clathrin, BAND 35.0 95 0.0032 27.5 7.2 269 84-382 16-299 (437)
352 2f6m_A Suppressor protein STP2 34.9 66 0.0023 19.9 4.1 46 46-92 4-49 (65)
353 3ctd_A Putative ATPase, AAA fa 34.8 1.7E+02 0.0058 23.2 8.6 63 259-321 37-107 (213)
354 1oyz_A Hypothetical protein YI 33.8 1.9E+02 0.0066 23.5 20.6 238 8-266 32-279 (280)
355 3qil_A Clathrin heavy chain 1; 33.5 39 0.0013 24.0 3.2 72 22-101 15-86 (125)
356 2pnn_A Transient receptor pote 31.9 44 0.0015 27.4 4.1 54 86-139 17-79 (273)
357 3bge_A Predicted ATPase; struc 31.3 1.9E+02 0.0064 22.6 8.6 61 260-320 10-78 (201)
358 1bd8_A P19INK4D CDK4/6 inhibit 30.0 1.5E+02 0.005 21.3 6.5 75 265-349 43-123 (156)
359 3aji_A 26S proteasome non-ATPa 30.0 1.7E+02 0.0057 22.8 7.3 180 190-382 9-193 (231)
360 2o03_A Probable zinc uptake re 29.8 82 0.0028 22.5 4.8 47 295-341 16-62 (131)
361 4fke_A Aminopeptidase N; zinc 29.8 4.4E+02 0.015 26.4 18.3 87 86-177 693-786 (909)
362 3mwm_A ZUR, putative metal upt 29.5 78 0.0027 23.0 4.6 48 294-341 18-65 (139)
363 2qq8_A TBC1 domain family memb 29.5 43 0.0015 28.9 3.7 46 275-320 214-259 (334)
364 2rfa_A Transient receptor pote 29.3 1.3E+02 0.0044 23.5 6.5 55 159-217 128-184 (232)
365 3bu8_A Telomeric repeat-bindin 28.5 2.2E+02 0.0077 22.6 7.3 77 60-137 88-171 (235)
366 2rfa_A Transient receptor pote 27.4 1.8E+02 0.0062 22.6 7.1 20 265-284 162-181 (232)
367 3twr_A Tankyrase-2; ankyrin re 27.4 86 0.0029 23.0 4.8 117 223-348 9-129 (165)
368 1bd8_A P19INK4D CDK4/6 inhibit 27.0 29 0.001 25.4 2.0 15 55-69 10-24 (156)
369 3pvs_A Replication-associated 27.0 3.5E+02 0.012 24.3 14.2 62 259-320 257-326 (447)
370 3qye_A TBC1 domain family memb 26.2 1.6E+02 0.0054 25.1 6.8 43 172-214 211-253 (331)
371 3pvs_A Replication-associated 25.7 3.7E+02 0.013 24.2 13.4 28 112-141 192-219 (447)
372 3ygs_P Procaspase 9; apoptosis 25.3 1.5E+02 0.0051 19.9 5.1 19 255-273 69-87 (97)
373 3f3f_C Nucleoporin NUP85; stru 25.3 2.8E+02 0.0096 25.9 8.3 71 96-168 498-568 (570)
374 3qil_A Clathrin heavy chain 1; 25.2 58 0.002 23.2 2.9 52 82-136 35-86 (125)
375 3bge_A Predicted ATPase; struc 24.9 2.5E+02 0.0085 22.0 8.4 33 56-88 19-51 (201)
376 2etb_A Transient receptor pote 24.9 82 0.0028 25.3 4.5 21 89-109 9-29 (256)
377 3bqo_A Telomeric repeat-bindin 24.4 84 0.0029 24.6 3.9 23 85-107 123-145 (211)
378 1zl8_A LIN-7; heterodimer, alp 24.1 1.1E+02 0.0038 17.7 4.3 20 58-77 7-26 (53)
379 3kae_A CDC27, possible protein 23.6 2.5E+02 0.0086 21.5 8.8 54 89-142 72-142 (242)
380 3hzj_A Rabgap1L, RAB GTPase-ac 23.5 1.2E+02 0.004 25.7 5.3 47 275-321 175-221 (310)
381 2etb_A Transient receptor pote 23.3 2E+02 0.007 22.8 6.7 57 120-177 5-71 (256)
382 3v31_A Ankyrin repeat family A 23.1 2.2E+02 0.0075 20.6 6.6 16 194-209 142-157 (167)
383 1s6c_A KV4 potassium channel-i 22.5 2.4E+02 0.0082 20.9 10.0 148 164-316 19-183 (183)
384 2qfz_A TBC1 domain family memb 22.5 2.7E+02 0.0093 23.8 7.6 46 205-250 230-275 (345)
385 3mv2_A Coatomer subunit alpha; 21.4 3.8E+02 0.013 22.8 12.3 53 164-216 185-239 (325)
386 3ljn_A Hypothetical protein; a 20.6 1.3E+02 0.0044 25.8 5.2 83 52-142 25-109 (364)
387 3f3f_C Nucleoporin NUP85; stru 20.3 4.1E+02 0.014 24.8 8.3 75 128-204 495-569 (570)
388 3e3v_A Regulatory protein RECX 20.1 2.9E+02 0.01 21.0 10.6 48 97-145 51-98 (177)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-36 Score=290.66 Aligned_cols=388 Identities=9% Similarity=-0.066 Sum_probs=312.0
Q ss_pred hccccccccccCCCChHHHHHHHHHhhc--cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh
Q 040580 14 FKRFNVPSHQTHPKNGDLARKIIRYRKQ--EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN 91 (412)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 91 (412)
..++.++..|.+.|++++|..+|+++.. |+..++..++.+|.+.|++++|..+|+++... +++..+++.++.+|.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHH
Confidence 3467777788888888888888887753 56677777888888888888888888777543 5677778888888888
Q ss_pred cCChHHHHHHHHHHHh-C--------------CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC-----------
Q 040580 92 NGFVLEAQVVWEELLS-S--------------SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA----------- 145 (412)
Q Consensus 92 ~~~~~~a~~~~~~m~~-~--------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------- 145 (412)
.|++++|.++|+++.. . +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 242 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS 242 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 8888888887774322 1 2344677788888888888888888777777754321
Q ss_pred -----------------------------------------------------------CCCHHhHHHHHHHHHhcCChH
Q 040580 146 -----------------------------------------------------------DLLPEVYSRAISCFGKQGQLE 166 (412)
Q Consensus 146 -----------------------------------------------------------~~~~~~~~~li~~~~~~g~~~ 166 (412)
++++.+|+.++.+|.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH
Confidence 256667888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHh
Q 040580 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVG 246 (412)
Q Consensus 167 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 246 (412)
+|+.+|+++.+.+.. +..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.+.|+++.
T Consensus 323 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 323 DVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888888888876432 66778888888888888888888888887543 4578899999999999999999999999875
Q ss_pred cCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhh
Q 040580 247 LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT 326 (412)
Q Consensus 247 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 326 (412)
...+. +..+|+.++.+|.+.|++++|+.+|+++.+.+ +++..+|..++.+|.+.|++++|.++|+++.+... .+..+
T Consensus 401 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 477 (597)
T 2xpi_A 401 TMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLL 477 (597)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 54333 45899999999999999999999999998764 45788999999999999999999999999987532 36889
Q ss_pred HHHHHHHHHhccccchHHHHHHhc-cC----CCCCC--cccHHHHHHHHhc-CCcccHHHHHHHhcc---CchHHHHHHH
Q 040580 327 YGCVVDAYLDKRLGRNLDFGLSKM-NL----DDSPV--VSTDPYVFEAFGK-GDFHSSSEAFLEFKR---QRKWTYRKLI 395 (412)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m-~~----~~~p~--~~~~~~li~~~~~-~~~~~a~~~~~~~~~---~~~~~~~~l~ 395 (412)
|+.+...|.+.|++++|.++++++ .. +..|+ ..++..+..+|.+ |++++|.+.+.++.. .+..+|..++
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999999999999999998 44 55677 5688888998877 999999999988654 5889999999
Q ss_pred HHHHHcCcccccc
Q 040580 396 AVYLKKQLRRNQI 408 (412)
Q Consensus 396 ~~~~~~g~~~~a~ 408 (412)
.+|.+.|++++|.
T Consensus 558 ~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 558 LVYLHKKIPGLAI 570 (597)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHhCCHHHHH
Confidence 9999999999983
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-34 Score=280.98 Aligned_cols=379 Identities=8% Similarity=-0.103 Sum_probs=281.1
Q ss_pred ccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 040580 21 SHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100 (412)
Q Consensus 21 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 100 (412)
..+.+.|.+..+...+..++.++...|+.++..+.+.|++++|..+|++|.. ..|+..++..++.+|.+.|++++|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3456778888899999998888999999999999999999999999999985 46888999999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHh-hc--------------CCCCCHHhHHHHHHHHHhcCCh
Q 040580 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS-CR--------------NADLLPEVYSRAISCFGKQGQL 165 (412)
Q Consensus 101 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~--------------~~~~~~~~~~~li~~~~~~g~~ 165 (412)
+|+.+... +++..+++.++.+|.+.|++++|.++|+++. .. +.+.++.+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99998653 7899999999999999999999999999542 22 2234578999999999999999
Q ss_pred HHHHHHHHHHHHCCCC----------------------------------------------------------------
Q 040580 166 ELMENTLKEMVSRGFS---------------------------------------------------------------- 181 (412)
Q Consensus 166 ~~a~~~~~~m~~~g~~---------------------------------------------------------------- 181 (412)
++|+++|++|.+.+..
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 9999999999764321
Q ss_pred ------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchH
Q 040580 182 ------VDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNL 255 (412)
Q Consensus 182 ------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 255 (412)
++..++..++.+|.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|.++++++....++ +..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-cHH
Confidence 455566666666777777777777777766554 225566667777777777777777777766433322 457
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYL 335 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 335 (412)
+|+.++..|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..+..+|.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 88888888888888888888888887642 33467888888888888888888888888876532 36778888888888
Q ss_pred hccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc--------Cc--hHHHHHHHHHHHHcCcc
Q 040580 336 DKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR--------QR--KWTYRKLIAVYLKKQLR 404 (412)
Q Consensus 336 ~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~--------~~--~~~~~~l~~~~~~~g~~ 404 (412)
+.|++++|.++++++......+..+|+.+...|.+ |++++|.+.|.++.. |+ ..+|..++.+|.+.|++
T Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 88888888888888832222456677788888777 888888888887632 33 56888888888888888
Q ss_pred ccc
Q 040580 405 RNQ 407 (412)
Q Consensus 405 ~~a 407 (412)
++|
T Consensus 533 ~~A 535 (597)
T 2xpi_A 533 DAA 535 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6e-35 Score=273.05 Aligned_cols=202 Identities=8% Similarity=0.023 Sum_probs=112.8
Q ss_pred HHHHHHhhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC---------HHHHH
Q 040580 135 SIIDQVSCRNADLLPE-VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS---------LTEME 204 (412)
Q Consensus 135 ~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~a~ 204 (412)
.+.+++++++....|. .++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 3334444444444443 3444455555555555555555555555555555555555555544332 34455
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 040580 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284 (412)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 284 (412)
++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|...+..||..+||++|.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55555555555555555555555555555555555555555555555555666666666667777777777777777777
Q ss_pred CCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 040580 285 FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336 (412)
Q Consensus 285 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 336 (412)
+.||..||++||.+|++.|++++|.+++++|.+.|+.|+..||+.++..|+.
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777766665
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.5e-34 Score=268.92 Aligned_cols=190 Identities=9% Similarity=0.045 Sum_probs=181.8
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC---------hHHHHHHHHHHHhCCCCcCH
Q 040580 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF---------VLEAQVVWEELLSSSFVLSV 114 (412)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~ 114 (412)
...++.+|.+|++.|++++|+++|++|.+.|++||..|||+||.+|++.+. +++|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346889999999999999999999999999999999999999999988765 68899999999999999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 040580 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194 (412)
Q Consensus 115 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 194 (412)
.|||+||.+|++.|++++|.++|++|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Q 040580 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233 (412)
Q Consensus 195 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 233 (412)
++.|++++|.+++++|.+.|..|+..||+.++..++..+
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999998753
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.3e-27 Score=216.23 Aligned_cols=376 Identities=9% Similarity=-0.085 Sum_probs=319.6
Q ss_pred cccccCCCChHHHHHHHHHhhc--c-ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH
Q 040580 20 PSHQTHPKNGDLARKIIRYRKQ--E-GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVL 96 (412)
Q Consensus 20 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 96 (412)
...+.+.|++++|...++.+.+ | +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 3455678999999999988764 3 55677778888899999999999999988763 567899999999999999999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMV 176 (412)
Q Consensus 97 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 176 (412)
+|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ +-++..+..+...+...|++++|...|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999864 5567789999999999999999999999998765 4445578888999999999999999999998
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHH
Q 040580 177 SRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256 (412)
Q Consensus 177 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 256 (412)
+... -+..++..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.....++ +..+
T Consensus 163 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 163 ETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 8632 256789999999999999999999999999865 346788999999999999999999999886444443 3589
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 040580 257 WNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD 336 (412)
Q Consensus 257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 336 (412)
+..+...|.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+.+
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 9999999999999999999999999763 2346789999999999999999999999998753 3478899999999999
Q ss_pred ccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc---CchHHHHHHHHHHHHcCc
Q 040580 337 KRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR---QRKWTYRKLIAVYLKKQL 403 (412)
Q Consensus 337 ~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 403 (412)
.|++++|.+.++++....+.+...+..+...|.+ |++++|.+.+.++.. .+...|..++..+.+.|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999943333455667778888877 999999999988654 568889999998887764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2e-25 Score=204.28 Aligned_cols=348 Identities=8% Similarity=-0.033 Sum_probs=298.9
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCH
Q 040580 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130 (412)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 130 (412)
...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 456678899999999999998763 3356677788888999999999999999998865 67889999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040580 131 NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD-SATGNAFIIYYSRFGSLTEMETAYGR 209 (412)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 209 (412)
++|.+.|+++.+.. +.++.+|..+..++.+.|++++|...|+++.+. .|+ ...+..+...+...|++++|...|+.
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999998765 455668999999999999999999999999885 454 45677788888999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-
Q 040580 210 LKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD- 288 (412)
Q Consensus 210 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~- 288 (412)
+.+.. +.+..++..+...+.+.|++++|.+.|+++....++ +...|..+...+...|++++|...|++..+. .|+
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 236 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH 236 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC
Confidence 98764 336789999999999999999999999997655444 3588999999999999999999999998875 454
Q ss_pred HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHH
Q 040580 289 LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAF 368 (412)
Q Consensus 289 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 368 (412)
..++..+...+.+.|++++|...++++.+... .+..+|..+...+.+.|++++|.+.++++....+++..++..+...+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 78889999999999999999999999988542 25678999999999999999999999999333345667788888888
Q ss_pred hc-CCcccHHHHHHHhcc---CchHHHHHHHHHHHHcCcccccc
Q 040580 369 GK-GDFHSSSEAFLEFKR---QRKWTYRKLIAVYLKKQLRRNQI 408 (412)
Q Consensus 369 ~~-~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 408 (412)
.+ |++++|.+.+.++.. .+..+|..++.+|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 77 999999999998765 56789999999999999999983
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3.3e-22 Score=186.48 Aligned_cols=357 Identities=9% Similarity=-0.039 Sum_probs=201.4
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44456666666666666666666666665542 3355666666666666666666666666666554 344566666666
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCH---HhHHHHH------------HHHHhcCChHHHHHHHHHHHHCCCCCChHHH
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLP---EVYSRAI------------SCFGKQGQLELMENTLKEMVSRGFSVDSATG 187 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 187 (412)
+|.+.|++++|.+.|+++.+.+ +.++ ..+..+. ..+...|++++|+..|+++.+... .+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 6666666666666666665433 2223 3444332 235566666666666666655421 244556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHH-------
Q 040580 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLL------- 260 (412)
Q Consensus 188 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------- 260 (412)
..+..++.+.|++++|...|+.+.+.. +.+..++..+...|...|++++|.+.++++....++ +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHH
Confidence 666666666666666666666665542 234566666666666666666666666665333322 12333333
Q ss_pred -----HHHHhcCCChHHHHHHHHHHHHcCCCCc-----HhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 040580 261 -----LLSYAGNFKMKSLQREFMRMSEAGFHPD-----LTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCV 330 (412)
Q Consensus 261 -----i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 330 (412)
...|...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 56666666666666666666653 343 2355566666666666666666666665431 1245666666
Q ss_pred HHHHHhccccchHHHHHHhc-cCCCCCCcc-cHHHHHH------------HHhc-C-----CcccHHHHHHHh----cc-
Q 040580 331 VDAYLDKRLGRNLDFGLSKM-NLDDSPVVS-TDPYVFE------------AFGK-G-----DFHSSSEAFLEF----KR- 385 (412)
Q Consensus 331 i~~~~~~~~~~~a~~~~~~m-~~~~~p~~~-~~~~li~------------~~~~-~-----~~~~a~~~~~~~----~~- 385 (412)
..+|...|++++|.+.+++. .. .|+.. .+..+-. .|.. | +..++.+.+.+. .|
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 66666666666666666666 32 22222 2222211 1111 2 334455555542 11
Q ss_pred --Cc-------hHHHHHHHHHHHHcCcccccccc
Q 040580 386 --QR-------KWTYRKLIAVYLKKQLRRNQIFW 410 (412)
Q Consensus 386 --~~-------~~~~~~l~~~~~~~g~~~~a~~w 410 (412)
++ ...+..+..+|...|+.+++..|
T Consensus 414 ~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~y 447 (450)
T 2y4t_A 414 NFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKF 447 (450)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC---
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhc
Confidence 22 23678889999999998888655
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.3e-22 Score=187.60 Aligned_cols=315 Identities=10% Similarity=-0.011 Sum_probs=262.0
Q ss_pred CCchhhccccccccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHH
Q 040580 9 HGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85 (412)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (412)
++.....+..+...+.+.|++++|...|+.+.+ .+..+|..+...+...|++++|...|+++.+.+ +.+..++..+
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 444556677888899999999999999998765 377889999999999999999999999999875 4468899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCH---HHHHHH------------HHHHHccCCHHHHHHHHHHHhhcCCCCCHH
Q 040580 86 MLCYANNGFVLEAQVVWEELLSSSFVLSV---QVLSDL------------MDAYGRIGCFNEIISIIDQVSCRNADLLPE 150 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 150 (412)
..++.+.|++++|...|+.+.+.+ +.+. .++..+ ...+.+.|++++|.+.|+++.+.. +.++.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 999999999999999999999864 3344 566665 444899999999999999998765 56778
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV----- 225 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 225 (412)
++..+...|.+.|++++|+.+|+++.+.. +.+..++..+...+...|++++|...|+.+.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 99999999999999999999999998753 2367889999999999999999999999998654 2245555544
Q ss_pred -------HHHHHhcccHHHHHHHHHHHhcCCCC-cc--hHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 040580 226 -------SFTYLKERKFFMLGEFLRDVGLGRKD-LG--NLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295 (412)
Q Consensus 226 -------i~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 295 (412)
...+.+.|++++|.+.++++....+. +. ..+|..+...+.+.|++++|+..++++.+.. +.+...+..+
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 78899999999999999987554443 21 3478899999999999999999999988753 3357899999
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCC-HhhHHHHH
Q 040580 296 AVAFSRMSMFWDLHLSLEHMKHESVGPD-LVTYGCVV 331 (412)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li 331 (412)
..+|...|++++|...++++.+ +.|+ ...+..+-
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 9999999999999999999987 4454 44555554
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.9e-22 Score=188.40 Aligned_cols=371 Identities=8% Similarity=-0.122 Sum_probs=285.6
Q ss_pred cccccccccCCCChHHHHHHHHHhhc--cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 040580 16 RFNVPSHQTHPKNGDLARKIIRYRKQ--EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93 (412)
Q Consensus 16 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (412)
+......+.+.|++++|...|+++.+ |+...|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..++.+.|
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHh
Confidence 34455677889999999999999865 688899999999999999999999999999875 446788999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCcC------------------------------------------------------------
Q 040580 94 FVLEAQVVWEELLSSSFVLS------------------------------------------------------------ 113 (412)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~~~------------------------------------------------------------ 113 (412)
++++|...|+.+.+.+ +++
T Consensus 88 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 9999999999988765 211
Q ss_pred -------------------HHHHHHHHHHHHc---cCCHHHHHHHHHHHhh-----cCC--------CCCHHhHHHHHHH
Q 040580 114 -------------------VQVLSDLMDAYGR---IGCFNEIISIIDQVSC-----RNA--------DLLPEVYSRAISC 158 (412)
Q Consensus 114 -------------------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~li~~ 158 (412)
...+..+...+.. .|++++|...|+++.+ ... +.++.++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 3333334443443 7889999999998876 211 1223477788888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHH
Q 040580 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 238 (412)
+...|++++|...|+++.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999988764 337778888888999999999999999988764 33667888888999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhC
Q 040580 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318 (412)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 318 (412)
...+++.....+. +..++..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 324 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 324 GKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999886544433 34788888999999999999999999988652 334677888888899999999999999888653
Q ss_pred CCC-CC----HhhHHHHHHHHHh---ccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc---
Q 040580 319 SVG-PD----LVTYGCVVDAYLD---KRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR--- 385 (412)
Q Consensus 319 g~~-p~----~~~~~~li~~~~~---~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~--- 385 (412)
... |+ ...+..+...+.. .|++++|.+.++.. ...+ .+...+..+...|.+ |++++|.+.+.+...
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 211 12 3377888888888 89999999999887 4332 234455566666666 999999888887544
Q ss_pred CchHHHHHH
Q 040580 386 QRKWTYRKL 394 (412)
Q Consensus 386 ~~~~~~~~l 394 (412)
.+...+..+
T Consensus 481 ~~~~~~~~~ 489 (514)
T 2gw1_A 481 TMEEKLQAI 489 (514)
T ss_dssp SHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 344444433
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.2e-22 Score=186.53 Aligned_cols=356 Identities=9% Similarity=-0.055 Sum_probs=290.5
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 040580 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123 (412)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 123 (412)
...+......+.+.|++++|+..|+++.+.. |+..+|..+..++.+.|++++|...++.+.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4456777888999999999999999999874 799999999999999999999999999999876 6678899999999
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCC-------------------------------------------------------
Q 040580 124 YGRIGCFNEIISIIDQVSCRNADLL------------------------------------------------------- 148 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~------------------------------------------------------- 148 (412)
+.+.|++++|...|+++...+ +++
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999987654 111
Q ss_pred ------------------------HHhHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCCCC--------ChHHHH
Q 040580 149 ------------------------PEVYSRAISCFGK---QGQLELMENTLKEMVS-----RGFSV--------DSATGN 188 (412)
Q Consensus 149 ------------------------~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~p--------~~~~~~ 188 (412)
+..+......+.. .|++++|+.+|+++.+ ..-.| +..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 2233333333333 8999999999999987 31122 345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC
Q 040580 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268 (412)
Q Consensus 189 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 268 (412)
.+...+...|++++|...++.+.+.... ...+..+...|...|++++|.+.+++.....+. +..++..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 8888999999999999999999887643 888999999999999999999999987554443 3488999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHH
Q 040580 269 KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLS 348 (412)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 348 (412)
++++|...|++..+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...|.+.|++++|.+.++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998753 33567888899999999999999999999887432 256788889999999999999999999
Q ss_pred hc-cCCC-CCC----cccHHHHHHHH-h---cCCcccHHHHHHHhc---cCchHHHHHHHHHHHHcCcccccc
Q 040580 349 KM-NLDD-SPV----VSTDPYVFEAF-G---KGDFHSSSEAFLEFK---RQRKWTYRKLIAVYLKKQLRRNQI 408 (412)
Q Consensus 349 ~m-~~~~-~p~----~~~~~~li~~~-~---~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~ 408 (412)
++ ...+ .|+ ...+..+...+ . .|++++|.+.+.+.. +.+..+|..++.+|.+.|++++|.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 88 3322 122 22455555555 5 699999999998754 467889999999999999999983
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=7.5e-20 Score=174.44 Aligned_cols=379 Identities=8% Similarity=-0.055 Sum_probs=213.7
Q ss_pred cccccccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 040580 16 RFNVPSHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92 (412)
Q Consensus 16 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 92 (412)
+..+...+.+.|++++|...|+++.+ .+..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++...
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 44555566667777777777766543 255666666667777777777777777766653 33566666666667777
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcC------CCCCHH----------------
Q 040580 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN------ADLLPE---------------- 150 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~---------------- 150 (412)
|++++|...|+.+ .. .|+.. +..+..+...+....|.+.++++.... ..|+..
T Consensus 107 g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 7777777766522 21 12211 111222222333344444444442210 001111
Q ss_pred --------------hHHHHHHHHH--------hcCChHHHHHHHHHHHHCCCCCC--------hHHHHHHHHHHHhcCCH
Q 040580 151 --------------VYSRAISCFG--------KQGQLELMENTLKEMVSRGFSVD--------SATGNAFIIYYSRFGSL 200 (412)
Q Consensus 151 --------------~~~~li~~~~--------~~g~~~~a~~~~~~m~~~g~~p~--------~~~~~~li~~~~~~g~~ 200 (412)
....+...+. ..|++++|..+++++.+.. |+ ..++..+...+...|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 1111111111 1136677777777776642 32 12355555666677777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHH
Q 040580 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280 (412)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 280 (412)
++|...++...+.. |+...+..+...+...|++++|.+.+++.....++ +..+|..+...|...|++++|...|++.
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77777777777653 44666777777777777777777777765433332 2466777777777777777777777777
Q ss_pred HHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc-cCCCC-CCc
Q 040580 281 SEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDS-PVV 358 (412)
Q Consensus 281 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~-p~~ 358 (412)
.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++. ...+. ++.
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 6542 2235566677777777777777777777776542 124556666777777777777777777765 22111 111
Q ss_pred c-c---HHHHHHHH-hc----------CCcccHHHHHHHhc---cCchHHHHHHHHHHHHcCccccc
Q 040580 359 S-T---DPYVFEAF-GK----------GDFHSSSEAFLEFK---RQRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 359 ~-~---~~~li~~~-~~----------~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a 407 (412)
. . +......+ .. |++++|.+.+.+.. +.+...|..++.+|.+.|++++|
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 1 0 11111112 22 67777777776543 35567777777777777777776
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=3.9e-18 Score=153.57 Aligned_cols=297 Identities=8% Similarity=-0.056 Sum_probs=173.5
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 040580 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124 (412)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 124 (412)
..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 345555666666666666666666666543 2345666666666666666666666666666553 33556666666666
Q ss_pred HccCCHHHHHHHHHHHhhcCCC---CCHHhHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 040580 125 GRIGCFNEIISIIDQVSCRNAD---LLPEVYSRA------------ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189 (412)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 189 (412)
...|++++|.+.|++..+.. + .++..+..+ ...+...|++++|+..++++.+... .+...+..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 66666666666666665432 1 223344333 3556666666666666666655422 24455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHH-----------
Q 040580 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN----------- 258 (412)
Q Consensus 190 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 258 (412)
+...+...|++++|...++...+.. +.+..++..+...+...|++++|.+.+++.....++. ...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH-KRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-hHHHHHHHHHHHHHHH
Confidence 6666666666666666666666543 3355566666666666666666666666543322221 12222
Q ss_pred -HHHHHHhcCCChHHHHHHHHHHHHcCCCCcH-----hHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 040580 259 -LLLLSYAGNFKMKSLQREFMRMSEAGFHPDL-----TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332 (412)
Q Consensus 259 -~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 332 (412)
.+...+.+.|++++|...+++..+. .|+. ..+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 2244566667777777777766654 2332 123345556666677777777776665532 124556666666
Q ss_pred HHHhccccchHHHHHHhc
Q 040580 333 AYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 333 ~~~~~~~~~~a~~~~~~m 350 (412)
.|.+.|++++|.+.+++.
T Consensus 315 ~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 666666666666666666
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=4.5e-19 Score=169.05 Aligned_cols=365 Identities=8% Similarity=-0.107 Sum_probs=254.6
Q ss_pred CCchhhccccccccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHH
Q 040580 9 HGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85 (412)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (412)
++.....+..+..+|.+.|++++|...++++.+ .+..++..+...+...|++++|...|+.+. . .|+.. ...
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~--~~~~~--~~~ 129 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS-L--NGDFD--GAS 129 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC--------------
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh-c--CCCCC--hHH
Confidence 444556677888899999999999999998765 367789999999999999999999996432 2 23322 222
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------CCCcCHH------------------------------HHHHHHHHHHcc--
Q 040580 86 MLCYANNGFVLEAQVVWEELLSS------SFVLSVQ------------------------------VLSDLMDAYGRI-- 127 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~------------------------------~~~~li~~~~~~-- 127 (412)
+..+...+....+...++.+.+. ...|+.. ....+...+...
T Consensus 130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (537)
T 3fp2_A 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209 (537)
T ss_dssp --CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhh
Confidence 33444555566777777777543 1112222 222222222222
Q ss_pred ------CCHHHHHHHHHHHhhcCCCCCHH-------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 040580 128 ------GCFNEIISIIDQVSCRNADLLPE-------VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194 (412)
Q Consensus 128 ------~~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 194 (412)
|++++|.++|+++.+.. +.++. ++..+...+...|++++|...|++..+. .|+...+..+...+
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 286 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHH
Confidence 47888888888887654 33333 4556667778888999999999988875 45577788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHH
Q 040580 195 SRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ 274 (412)
Q Consensus 195 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 274 (412)
...|++++|...++...+.. +.+..++..+...+...|++++|.+.+++.....+. +..+|..+...|...|++++|.
T Consensus 287 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 88999999999998888765 346778888888999999999999998886444333 2378888889999999999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHhc----------cc
Q 040580 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHES-----VGPDLVTYGCVVDAYLDK----------RL 339 (412)
Q Consensus 275 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~----------~~ 339 (412)
..+++..+.. +.+...+..+...+...|++++|...++++.+.. .......+......+.+. |+
T Consensus 365 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 365 AFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 9999888663 3346678888888899999999999998876532 111122233444566666 88
Q ss_pred cchHHHHHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc
Q 040580 340 GRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR 385 (412)
Q Consensus 340 ~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~ 385 (412)
+++|.+.+++. ...+ .+...+..+...|.+ |++++|.+.+.+...
T Consensus 444 ~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 444 FNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999888 4332 334556666666666 999999888887544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=3.5e-18 Score=153.89 Aligned_cols=313 Identities=10% Similarity=-0.006 Sum_probs=254.7
Q ss_pred cccccccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 040580 16 RFNVPSHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92 (412)
Q Consensus 16 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 92 (412)
+..+...+.+.|++++|...|+++.+ .+..++..+...+...|++++|...|+++.+.. +-+...+..+...+...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence 44556677889999999999998765 367789999999999999999999999998863 33678899999999999
Q ss_pred CChHHHHHHHHHHHhCCCC---cCHHHHHHH------------HHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 040580 93 GFVLEAQVVWEELLSSSFV---LSVQVLSDL------------MDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~---~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (412)
|++++|...|+...+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.++..+..+..
T Consensus 85 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 99999999999999864 3 355556555 588899999999999999998775 567789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH------------HH
Q 040580 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIR------------AV 225 (412)
Q Consensus 158 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------~l 225 (412)
.+...|++++|+..+++..+... .+..++..+...+...|++++|...++...+... .+...+. .+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988632 3678888999999999999999999999987642 2333333 23
Q ss_pred HHHHHhcccHHHHHHHHHHHhcCCCCcch---HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHcc
Q 040580 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGN---LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302 (412)
Q Consensus 226 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 302 (412)
...+.+.|++++|.+.+++.....++... ..+..+...+...|++++|...+++..+.. +.+..++..+...+...
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc
Confidence 66688999999999999987554443211 335567889999999999999999998762 33678899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHh
Q 040580 303 SMFWDLHLSLEHMKHESVGPD-LVTYGCVVDAYLD 336 (412)
Q Consensus 303 g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 336 (412)
|++++|...|++..+. .|+ ...+..+..+...
T Consensus 320 g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 9999999999998874 454 5555555555443
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=5.5e-19 Score=160.06 Aligned_cols=311 Identities=8% Similarity=-0.076 Sum_probs=212.1
Q ss_pred CChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHH-HHHHHHhcCC-CC--CHHhHHHHHHHHHhcCChHHHHHHH
Q 040580 27 KNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQ-LVNTVKSEGL-LP--DNSTLCALMLCYANNGFVLEAQVVW 102 (412)
Q Consensus 27 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~ 102 (412)
..++.+...++.+...+.. ++...|++++|++ .|++...... .| +...+..+...+.+.|++++|...|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555554443322 2334477888887 7776554321 11 3456778888888899999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040580 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182 (412)
Q Consensus 103 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 182 (412)
+.+.+.. +.+..++..+..++.+.|++++|.+.|+++.+.+ +.++.++..+...+...|++++|...++++.+....
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 164 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA- 164 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 9988875 5677888888899999999999999999887765 556778888888899999999999999988875432
Q ss_pred ChHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHh
Q 040580 183 DSATGNA---------------FIIYYSRFGSLTEMETAYGRLKRSRHLI-DKEGIRAVSFTYLKERKFFMLGEFLRDVG 246 (412)
Q Consensus 183 ~~~~~~~---------------li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 246 (412)
+...+.. .+..+...|++++|...++.+.+..... +..++..+...|...|++++|.+.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1122211 2333448888999999998888764322 57888888888889999999998888764
Q ss_pred cCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC-----
Q 040580 247 LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG----- 321 (412)
Q Consensus 247 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~----- 321 (412)
...++ +..+|..+...|...|++++|...|++..+.. +.+..++..+...+.+.|++++|...++++.+....
T Consensus 245 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 322 (368)
T 1fch_A 245 SVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322 (368)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 43333 34788888999999999999999999888653 334678888888999999999999999887652111
Q ss_pred -----CCHhhHHHHHHHHHhccccchHHHHHHh
Q 040580 322 -----PDLVTYGCVVDAYLDKRLGRNLDFGLSK 349 (412)
Q Consensus 322 -----p~~~~~~~li~~~~~~~~~~~a~~~~~~ 349 (412)
....+|..+..+|.+.|+.++|..+++.
T Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp --CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 1257888888889899999888888764
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1e-17 Score=149.14 Aligned_cols=285 Identities=10% Similarity=-0.087 Sum_probs=211.2
Q ss_pred cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 040580 42 EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121 (412)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 121 (412)
.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++.+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 356667777888888899999999998887764 3355667777788888899999999998888764 55677888888
Q ss_pred HHHHccC-CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 040580 122 DAYGRIG-CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200 (412)
Q Consensus 122 ~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 200 (412)
..+...| ++++|.+.|++..+.. +.++..|..+...+...|++++|+..|++..+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 8888888 8899999998887654 445668888888888899999999999888775322 345666688888888899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC--------CCcchHHHHHHHHHHhcCCChHH
Q 040580 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR--------KDLGNLLWNLLLLSYAGNFKMKS 272 (412)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~ 272 (412)
++|...++...+.. +.+..++..+...+...|++++|.+.+++..... ......++..+...|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99988888887764 3456777778888888888888888777653211 01123677777778888888888
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHH
Q 040580 273 LQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP-DLVTYGCVVDAY 334 (412)
Q Consensus 273 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 334 (412)
|...|++..+.. +.+...+..+...+.+.|++++|...+++..+. .| +...+..+..++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 888888777653 234566777777777788888888777776543 34 455555555555
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=9.8e-18 Score=149.24 Aligned_cols=288 Identities=8% Similarity=-0.100 Sum_probs=221.4
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHH
Q 040580 75 LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR 154 (412)
Q Consensus 75 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 154 (412)
.+.+...+..+...+...|++++|..+++.+.+.. +.+...+..++.++.+.|++++|..+++++.+.. +.++..|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 35566777888888889999999999999998865 5566777778888899999999999999998765 556778888
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Q 040580 155 AISCFGKQG-QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233 (412)
Q Consensus 155 li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 233 (412)
+...+...| ++++|...|++..+.... +...+..+...+...|++++|...++...+... .+...+..+...|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence 999999999 899999999998876422 467788888999999999999999999887652 24566777888888899
Q ss_pred cHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcC--------CCCcHhHHHHHHHHHHccCCh
Q 040580 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG--------FHPDLTTFNIRAVAFSRMSMF 305 (412)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~ll~~~~~~g~~ 305 (412)
++++|.+.+++.....+. +..++..+...+...|++++|...+++..+.. .+.+..++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999988886554443 35788888888888999999998888877531 122356778888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHH
Q 040580 306 WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAF 368 (412)
Q Consensus 306 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 368 (412)
++|...+++..+... .+...+..+...|.+.|++++|.+.+++...-.+.+...+..+..++
T Consensus 253 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 888888888776432 25667777888888888888888888887322222344444454555
No 18
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=181.29 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHh---cCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 040580 219 KEGIRAVSFTYLKERKFFMLGEFLRDVG---LGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295 (412)
Q Consensus 219 ~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 295 (412)
..||++||++||+.|++++|.++|.+|. ..+..||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3456666666666666666666665543 2345567789999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhccCCCCCC------cccHHHHHHHH
Q 040580 296 AVAFSRMSMF-WDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPV------VSTDPYVFEAF 368 (412)
Q Consensus 296 l~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~------~~~~~~li~~~ 368 (412)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+.+..+++..+..|+ ..+...|.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999985 78899999999999999999999998877665 4555666663333333 55666777777
Q ss_pred hc
Q 040580 369 GK 370 (412)
Q Consensus 369 ~~ 370 (412)
.+
T Consensus 283 s~ 284 (1134)
T 3spa_A 283 AK 284 (1134)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=3.7e-18 Score=154.61 Aligned_cols=288 Identities=9% Similarity=-0.087 Sum_probs=228.3
Q ss_pred cccCCCChHHHHH-HHHHhhc---c----ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 040580 22 HQTHPKNGDLARK-IIRYRKQ---E----GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93 (412)
Q Consensus 22 ~~~~~~~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (412)
.+.-.|++++|.. .+++... . +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4556688899988 8875433 1 35668889999999999999999999999874 457888999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHH---------------HHHH
Q 040580 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSR---------------AISC 158 (412)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------li~~ 158 (412)
++++|...|+.+.+.+ +.+..++..+..++...|++++|.+.|+++.... +.++..+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999999876 6688999999999999999999999999998765 333333321 2444
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHH
Q 040580 159 FGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM 237 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 237 (412)
+...|++++|...|+++.+..... +..++..+...+.+.|++++|...++...+.. +.+..++..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 458999999999999998864321 47888899999999999999999999998764 3468899999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC---C-------cHhHHHHHHHHHHccCChhH
Q 040580 238 LGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH---P-------DLTTFNIRAVAFSRMSMFWD 307 (412)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p-------~~~~~~~ll~~~~~~g~~~~ 307 (412)
|.+.+++.....++ +..++..+...|.+.|++++|...|++..+..-. | ...+|..+..++...|+.++
T Consensus 270 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999986544333 3588999999999999999999999998754211 1 15789999999999999999
Q ss_pred HHHHHHH
Q 040580 308 LHLSLEH 314 (412)
Q Consensus 308 a~~~~~~ 314 (412)
|..++.+
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9988763
No 20
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=181.76 Aligned_cols=168 Identities=13% Similarity=0.035 Sum_probs=129.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHh---hcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 040580 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVS---CRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA 189 (412)
Q Consensus 113 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 189 (412)
-..|||+||++|++.|++++|.++|++|. ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999998875 357889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHhcC
Q 040580 190 FIIYYSRFGS-LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD-LGNLLWNLLLLSYAGN 267 (412)
Q Consensus 190 li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 267 (412)
+|.++++.|+ .+.|.++|++|.+.|+.||..+|++++.+..+.+-++.+.++...+...... +...+...|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 9999999987 4788899999999999999999999988777765555554443333322111 1123445556666665
Q ss_pred C---------ChHHHHHHHHHH
Q 040580 268 F---------KMKSLQREFMRM 280 (412)
Q Consensus 268 g---------~~~~a~~~~~~m 280 (412)
+ ..++-...|++-
T Consensus 286 ~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 286 GRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp SCCCCCCCSSCHHHHHHHHHHH
T ss_pred CCCcCccccCCHHHHHHHHHHH
Confidence 5 235555566543
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=7.8e-18 Score=152.46 Aligned_cols=265 Identities=8% Similarity=-0.066 Sum_probs=160.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (412)
...+..+...+.+.|++++|..+|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ +.++.+|..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666666543 4455666666666666666666666666665543 3345566666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 040580 159 FGKQGQLELMENTLKEMVSRGFSVD-----------SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL-IDKEGIRAVS 226 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li 226 (412)
|...|++++|+..|+++.+.. |+ ...+..+...+.+.|++++|...++++.+.... ++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 666666666666666665431 21 112233455666666777777777666655322 1466666667
Q ss_pred HHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChh
Q 040580 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW 306 (412)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 306 (412)
..|...|++++|.+.+++.....++ +..+|+.+...|...|++++|+..|++..+.. +.+..++..+...|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 7777777777777776664333332 34677778888888888888888888777652 223667777778888888888
Q ss_pred HHHHHHHHHHhCC---CC--------CCHhhHHHHHHHHHhccccchHHHHHHh
Q 040580 307 DLHLSLEHMKHES---VG--------PDLVTYGCVVDAYLDKRLGRNLDFGLSK 349 (412)
Q Consensus 307 ~a~~~~~~m~~~g---~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~ 349 (412)
+|...|+++.+.. .. .+...|..+..++...|+.+.+.++.+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888887776521 01 1356777888888888888777777654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=8.9e-18 Score=152.05 Aligned_cols=263 Identities=10% Similarity=-0.050 Sum_probs=155.5
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 040580 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123 (412)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 123 (412)
...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666666666777777777777766653 3356666666777777777777777777766653 4456666777777
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCHHhHHH----------HHHHHHhcCChHHHHHHHHHHHHCCCC-CChHHHHHHHH
Q 040580 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSR----------AISCFGKQGQLELMENTLKEMVSRGFS-VDSATGNAFII 192 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----------li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~ 192 (412)
|.+.|++++|.+.|+++.+.. +.++..+.. +...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 777777777777777665533 111223322 255666667777777777766664322 13556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHH
Q 040580 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS 272 (412)
Q Consensus 193 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 272 (412)
.+.+.|++++|...+++..+.. +.+..++..+..+|...|++++|.+.+++.....++ +..+|..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence 6667777777777776666543 235666666777777777777777776665333332 24666666677777777777
Q ss_pred HHHHHHHHHHcC---CCC--------cHhHHHHHHHHHHccCChhHHHHH
Q 040580 273 LQREFMRMSEAG---FHP--------DLTTFNIRAVAFSRMSMFWDLHLS 311 (412)
Q Consensus 273 a~~~~~~m~~~~---~~p--------~~~~~~~ll~~~~~~g~~~~a~~~ 311 (412)
|...|++..+.. ..| +...|..+..++...|+.+.+..+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 777776665431 000 244566666666666666655543
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=5.2e-18 Score=152.01 Aligned_cols=284 Identities=11% Similarity=0.004 Sum_probs=130.9
Q ss_pred cCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 040580 24 THPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103 (412)
Q Consensus 24 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 103 (412)
-+.|++++|.++++++..|+ +|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47788999999999996664 899999999999999999999965 3588899999999999999999999887
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040580 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183 (412)
Q Consensus 104 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 183 (412)
..++. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 77764 5668889999999999999999988885 366679999999999999999999999977
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 040580 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLS 263 (412)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 263 (412)
..|..+..++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. .. +.-...++..
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~--ad~l~~lv~~ 216 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VH--ADELEELINY 216 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TC--HHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hC--HhhHHHHHHH
Confidence 47999999999999999999999988 378999999999999999999966555432 22 2445578899
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHH-hCCCCC------CHhhHHHHHHHHHh
Q 040580 264 YAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK-HESVGP------DLVTYGCVVDAYLD 336 (412)
Q Consensus 264 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-~~g~~p------~~~~~~~li~~~~~ 336 (412)
|.+.|++++|..+++...... +-....|+-+--+|++-+ +++..+-++... +-+++| +...|..++-.|..
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887443 334667777777777653 344433333322 223444 46678888888888
Q ss_pred ccccchHHHH
Q 040580 337 KRLGRNLDFG 346 (412)
Q Consensus 337 ~~~~~~a~~~ 346 (412)
.++++.|...
T Consensus 295 ~~e~d~A~~t 304 (449)
T 1b89_A 295 YEEYDNAIIT 304 (449)
T ss_dssp TTCHHHHHHH
T ss_pred hchHHHHHHH
Confidence 8888766554
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=9.4e-17 Score=142.63 Aligned_cols=264 Identities=9% Similarity=-0.063 Sum_probs=158.0
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
+...+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44456667777888888888888888887753 3367777788888888888888888888887764 556778888888
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCChHHH
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRA--------------IS-CFGKQGQLELMENTLKEMVSRGFSVDSATG 187 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 187 (412)
.+...|++++|.+.++++.+.. +.++..+..+ .. .+...|++++|...++++.+.... +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 8888888888888888887653 2223333333 11 255666677777777766654321 45566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC
Q 040580 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267 (412)
Q Consensus 188 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 267 (412)
..+...+.+.|++++|...++.+.+.. +.+..++..+...+...|++++|.+.+++.....++ +..++..+...|...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 666666667777777777776665543 223445555555555555555555555543222221 224455555555555
Q ss_pred CChHHHHHHHHHHHHcCCCC-----------cHhHHHHHHHHHHccCChhHHHHHH
Q 040580 268 FKMKSLQREFMRMSEAGFHP-----------DLTTFNIRAVAFSRMSMFWDLHLSL 312 (412)
Q Consensus 268 g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~ 312 (412)
|++++|...|++..+..-.+ +..++..+..++.+.|+.++|..++
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 55555555555544321110 2334444455555555555554444
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=1.1e-14 Score=137.07 Aligned_cols=351 Identities=10% Similarity=-0.029 Sum_probs=264.4
Q ss_pred HHHHHHhh-ccChhhHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHH
Q 040580 33 RKIIRYRK-QEGFVDCASLVEDLGR----KKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN----NGFVLEAQVVWE 103 (412)
Q Consensus 33 ~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~ 103 (412)
...++... ..+..++..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|...|+
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 44444433 3477778888887877 788999999999888765 67778888888888 889999999999
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHH
Q 040580 104 ELLSSSFVLSVQVLSDLMDAYGR----IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK----QGQLELMENTLKEM 175 (412)
Q Consensus 104 ~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m 175 (412)
...+.| +...+..|...|.. .+++++|.+.|++..+.+ ++..+..+...|.. .+++++|+..|++.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 988865 56677778888887 788999999999887765 45677777777776 78899999999988
Q ss_pred HHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHhc
Q 040580 176 VSRGFSVDSATGNAFIIYYSR----FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK----ERKFFMLGEFLRDVGL 247 (412)
Q Consensus 176 ~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~ 247 (412)
.+.| +...+..+...|.+ .++.++|...|+...+.| ++..+..+...|.. .+++++|.+.+++...
T Consensus 178 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 178 AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 8764 56677777777777 789999999999888765 56777777777776 7889999999988655
Q ss_pred CCCCcchHHHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHcc-----CChhHHHHHHHHHHhC
Q 040580 248 GRKDLGNLLWNLLLLSYAG----NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM-----SMFWDLHLSLEHMKHE 318 (412)
Q Consensus 248 ~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~ 318 (412)
.+ +...+..+...|.. .++.++|+..|++..+.| +...+..+...|... ++.++|...+++..+.
T Consensus 252 ~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 252 QG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred CC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 43 23667777777776 789999999999888654 445666677777776 8899999999888876
Q ss_pred CCCCCHhhHHHHHHHHHhcc---ccchHHHHHHhc-cCCCCCCcccHHHHHHHHh-----cCCcccHHHHHHHhcc-Cch
Q 040580 319 SVGPDLVTYGCVVDAYLDKR---LGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFG-----KGDFHSSSEAFLEFKR-QRK 388 (412)
Q Consensus 319 g~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~-----~~~~~~a~~~~~~~~~-~~~ 388 (412)
| +...+..+-..|...| +.++|.+.+++. ..+ +...+..+-..|. .++.++|.+.+.+... .++
T Consensus 326 ~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~ 399 (490)
T 2xm6_A 326 G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLS 399 (490)
T ss_dssp T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCH
Confidence 5 3445566666666645 778888888887 432 2233333444443 3778888888887555 578
Q ss_pred HHHHHHHHHHHH----cCcccccccc
Q 040580 389 WTYRKLIAVYLK----KQLRRNQIFW 410 (412)
Q Consensus 389 ~~~~~l~~~~~~----~g~~~~a~~w 410 (412)
..+..|...|.+ .++.++|..|
T Consensus 400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 400 AAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 888889999988 7888888655
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=6.7e-17 Score=143.58 Aligned_cols=267 Identities=12% Similarity=-0.004 Sum_probs=216.0
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (412)
+...+..+...+...|++++|..+|+.+.+.. +.+..++..+..++.+.|++++|.+.|+++.+.. +.++.++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34556777888999999999999999999875 5678899999999999999999999999998775 556779999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 040580 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAF--------------II-YYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222 (412)
Q Consensus 158 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 222 (412)
.+...|++++|...+++..+.... +...+..+ .. .+...|++++|...++.+.+.. +.+..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 999999999999999999886322 22233222 22 3677889999999999988765 3378889
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHcc
Q 040580 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302 (412)
Q Consensus 223 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 302 (412)
..+...|...|++++|.+.+++.....++ +..++..+...+...|++++|...|++..+.. +.+..++..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 99999999999999999999986544433 35788999999999999999999999988653 33577888899999999
Q ss_pred CChhHHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 303 SMFWDLHLSLEHMKHESVGP-----------DLVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 303 g~~~~a~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
|++++|...+++..+....+ +...+..+..++.+.|+.++|.+++++.
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999887643221 4678888889999999999998888655
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=4.9e-17 Score=145.75 Aligned_cols=351 Identities=9% Similarity=0.011 Sum_probs=174.7
Q ss_pred hhhccccccccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh
Q 040580 12 FKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN 91 (412)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 91 (412)
.+..|..+..++.+.|++++|...|.+ .+|...|..++..+...|++++|+..++...+. .+++.+.+.++.+|.+
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHH
Confidence 346788999999999999999999965 467779999999999999999999977776664 5568889999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 040580 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENT 171 (412)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 171 (412)
.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.
T Consensus 107 lg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea 170 (449)
T 1b89_A 107 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 170 (449)
T ss_dssp --CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHH
Confidence 999999998884 478889999999999999999999999977 3799999999999999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCC
Q 040580 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251 (412)
Q Consensus 172 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 251 (412)
+.++ .++.+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+++|..+++..-... +
T Consensus 171 ~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ 238 (449)
T 1b89_A 171 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-R 238 (449)
T ss_dssp HHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-T
T ss_pred HHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-H
Confidence 9988 2789999999999999999999555443 33455556679999999999999999999853332 2
Q ss_pred cchHHHHHHHHHHhcC--CChHHHHHHHHHHHHcCCCC------cHhHHHHHHHHHHccCChhHHHHHHHHHHhC-CC--
Q 040580 252 LGNLLWNLLLLSYAGN--FKMKSLQREFMRMSEAGFHP------DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE-SV-- 320 (412)
Q Consensus 252 ~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~-- 320 (412)
.-...|+-|-.+|++- ++..+.++.|.. .-+++| +...|..+.-.|...++++.|... |.++ ..
T Consensus 239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~ 313 (449)
T 1b89_A 239 AHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAW 313 (449)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhh
Confidence 2357888888888876 455556555542 223333 456788888889999999988763 3333 12
Q ss_pred -----------CCCHhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhccCc-
Q 040580 321 -----------GPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKRQR- 387 (412)
Q Consensus 321 -----------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~~~- 387 (412)
..+...|-..+.-|. ...+...-.++.-+..... .+.++..+.+ |...-+...+..+.+.|
T Consensus 314 ~~~~f~~~~~kv~n~elyYkai~fyl-~~~p~~l~~ll~~l~~~ld-----~~r~v~~~~~~~~l~l~~~yl~~v~~~n~ 387 (449)
T 1b89_A 314 KEGQFKDIITKVANVELYYRAIQFYL-EFKPLLLNDLLMVLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHNN 387 (449)
T ss_dssp CHHHHHHHHHHCSSTHHHHHHHHHHH-HHCGGGHHHHHHHHGGGCC-----HHHHHHHHHHTTCTTTTHHHHHHHHTTCC
T ss_pred hhHHHHHHHhchhHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhccC-----cHHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 123445544554444 2233333333333322221 2445566666 77777777776666644
Q ss_pred hHHHHHHHHHHHHcCccc
Q 040580 388 KWTYRKLIAVYLKKQLRR 405 (412)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~ 405 (412)
..+-.++-+-|....|++
T Consensus 388 ~~vnealn~l~ieeed~~ 405 (449)
T 1b89_A 388 KSVNESLNNLFITEEDYQ 405 (449)
T ss_dssp HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhhhHH
Confidence 333444444555555543
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=8.8e-16 Score=134.09 Aligned_cols=244 Identities=10% Similarity=-0.020 Sum_probs=129.6
Q ss_pred CCCChHHHHHHHHHhhccC----hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 040580 25 HPKNGDLARKIIRYRKQEG----FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV 100 (412)
Q Consensus 25 ~~~~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 100 (412)
..|++..|+..++.....+ ......+.+++...|+++.|+..++. . -+|+..++..+...+...++.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3566666666665544322 12334455666666666666655433 1 24455556666666666666666666
Q ss_pred HHHHHHhCCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 040580 101 VWEELLSSSFVL-SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRG 179 (412)
Q Consensus 101 ~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 179 (412)
.++.+...+..| +...+..+...+...|++++|++.+++ +.++..+..+...+.+.|++++|...|+++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 666666554323 445555555666666666666666665 3445566666666666666666666666666542
Q ss_pred CCCChHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHH
Q 040580 180 FSVDSATG---NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLL 256 (412)
Q Consensus 180 ~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 256 (412)
|+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.+++.-...++ +..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 332211 112223333456666666666665542 334555555555555555555555555553222221 2244
Q ss_pred HHHHHHHHhcCCChHH-HHHHHHHHHH
Q 040580 257 WNLLLLSYAGNFKMKS-LQREFMRMSE 282 (412)
Q Consensus 257 ~~~li~~~~~~g~~~~-a~~~~~~m~~ 282 (412)
+..++..+...|+.++ +.++++++.+
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5555555555555443 3445555443
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=8.2e-16 Score=134.26 Aligned_cols=274 Identities=10% Similarity=-0.041 Sum_probs=189.9
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC
Q 040580 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDN--STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG 128 (412)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 128 (412)
|+.....|+++.|+..++..... .|+. .....+.++|...|+++.|...++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 34455678888888888766543 3443 3556677888889998888876644 2 3677788888888888888
Q ss_pred CHHHHHHHHHHHhhcCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 040580 129 CFNEIISIIDQVSCRNADL-LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAY 207 (412)
Q Consensus 129 ~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 207 (412)
+.++|.+.++++...+..| ++..+..+...+...|++++|++.+++ ..+...+..+...+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999887665433 455777777888889999999988877 346677888888888999999999999
Q ss_pred HHHHhCCCCCCHHH---HHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 040580 208 GRLKRSRHLIDKEG---IRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG 284 (412)
Q Consensus 208 ~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 284 (412)
+.+.+.. |+... ....+..+...|++++|..+|+++....++ +...++.+..++.+.|++++|...|++..+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888764 44221 122333344457888888888876554333 45778888888888888888888888877652
Q ss_pred CCCcHhHHHHHHHHHHccCChhH-HHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHH
Q 040580 285 FHPDLTTFNIRAVAFSRMSMFWD-LHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345 (412)
Q Consensus 285 ~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 345 (412)
+-+..++..++..+...|+.++ +.++++++.+ +.|+... +.+...+.+.++++..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHHHHHHHHHHHHHH
Confidence 2246677777777777787765 5677777665 3444322 2333444555554443
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=8.8e-14 Score=131.01 Aligned_cols=342 Identities=9% Similarity=-0.029 Sum_probs=275.5
Q ss_pred ccccccccC----CCChHHHHHHHHHhhcc-ChhhHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 040580 17 FNVPSHQTH----PKNGDLARKIIRYRKQE-GFVDCASLVEDLGR----KKKPHLAHQLVNTVKSEGLLPDNSTLCALML 87 (412)
Q Consensus 17 ~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 87 (412)
..+...|.. .+++++|...|++..+. +..++..+...|.. .+++++|.+.|++..+.| +...+..|..
T Consensus 43 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~ 119 (490)
T 2xm6_A 43 LELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGV 119 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 334444544 88999999999987654 77788888888888 899999999999998875 6778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 040580 88 CYAN----NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR----IGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159 (412)
Q Consensus 88 ~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (412)
.|.. .+++++|...|+...+.| +...+..|...|.. .++.++|.+.|++..+.+ ++..+..+...|
T Consensus 120 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 193 (490)
T 2xm6_A 120 MYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMY 193 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8888 889999999999999876 56778888888887 789999999999998764 567888888888
Q ss_pred Hh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040580 160 GK----QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR----FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK 231 (412)
Q Consensus 160 ~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 231 (412)
.. .+++++|...|++..+.| +...+..+...|.. .++.++|...|+...+.| +...+..+...|..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQ 267 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred hcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHC
Confidence 87 899999999999998865 45667777777775 789999999999998865 56677777777877
Q ss_pred ----cccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC-----CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHcc
Q 040580 232 ----ERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN-----FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRM 302 (412)
Q Consensus 232 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 302 (412)
.+++++|.+.+++....+ +..++..+...|... +++++|+..|++..+.| +...+..+...|...
T Consensus 268 g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 899999999999876543 347788888888877 89999999999998865 445666777777765
Q ss_pred C---ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----ccccchHHHHHHhc-cCCCCCCcccHHHHHHHHh-----
Q 040580 303 S---MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD----KRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFG----- 369 (412)
Q Consensus 303 g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~----- 369 (412)
| +.++|.+.|++..+.| +...+..+-..|.. .+++++|.+.+++. ..+. ...+..+-..|.
T Consensus 342 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~---~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL---SAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSS
T ss_pred CCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCC
Confidence 6 7889999999988864 56677788888888 78999999999998 4432 233444444443
Q ss_pred cCCcccHHHHHHHhcc
Q 040580 370 KGDFHSSSEAFLEFKR 385 (412)
Q Consensus 370 ~~~~~~a~~~~~~~~~ 385 (412)
.++.++|.+.+.+...
T Consensus 416 ~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 416 ERDYVQAWAWFDTAST 431 (490)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4888999999987554
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=1e-14 Score=138.73 Aligned_cols=388 Identities=7% Similarity=-0.065 Sum_probs=272.4
Q ss_pred CCchhhccccccccccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHH
Q 040580 9 HGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCAL 85 (412)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 85 (412)
++.....+..++. +.+.|++++|+.+|+++.+. +...|..++..+.+.|++++|..+|++.... .|+...|...
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 4444455666676 46789999999999998763 6677999999999999999999999999976 4788888777
Q ss_pred HHHH-HhcCChHHHHH----HHHHHHh-CCCC-cCHHHHHHHHHHHHc---------cCCHHHHHHHHHHHhhcCCCCC-
Q 040580 86 MLCY-ANNGFVLEAQV----VWEELLS-SSFV-LSVQVLSDLMDAYGR---------IGCFNEIISIIDQVSCRNADLL- 148 (412)
Q Consensus 86 l~~~-~~~~~~~~a~~----~~~~m~~-~~~~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~- 148 (412)
+... ...|+.+.|.+ +|+..++ .|.. ++...|...+....+ .|+++.|..+|++..+. +..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~~ 163 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMIN 163 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCTT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhhh
Confidence 7533 45677777665 7777655 3543 457788888887655 68999999999999862 222
Q ss_pred -HHhHHHHHHHH-------------HhcCChHHHHHHHHHHH------HCC---CCCC--------hHHHHHHHHHHHhc
Q 040580 149 -PEVYSRAISCF-------------GKQGQLELMENTLKEMV------SRG---FSVD--------SATGNAFIIYYSRF 197 (412)
Q Consensus 149 -~~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~~~ 197 (412)
...|....... .+.++++.|..++.+.. +.. +.|+ ...|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 12443322211 13456777877777632 221 2343 23455544333221
Q ss_pred ----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cccHH-------HHHHHHHHHhc-CCCCcch
Q 040580 198 ----GSL----TEMETAYGRLKRSRHLIDKEGIRAVSFTYLK-------ERKFF-------MLGEFLRDVGL-GRKDLGN 254 (412)
Q Consensus 198 ----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~-~~~~~~~ 254 (412)
++. ..+..+|++..... +.++..|..+...+.+ .|+++ +|.+++++... ..++ +.
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~ 321 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NM 321 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-CH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc-cH
Confidence 232 36778888887753 4478888888888876 68877 89999998754 2222 45
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL--TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVD 332 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 332 (412)
..|..++..+.+.|++++|..+|++..+. .|+. ..|..++..+.+.|++++|..+|++..+... .+...|.....
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~ 398 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHH
Confidence 88999999999999999999999999974 5653 4788888888899999999999999876422 12222322221
Q ss_pred -HHHhccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc---Cc----hHHHHHHHHHHHHcC
Q 040580 333 -AYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR---QR----KWTYRKLIAVYLKKQ 402 (412)
Q Consensus 333 -~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~---~~----~~~~~~l~~~~~~~g 402 (412)
.+...|+.++|.++|+.. +..+ .+...+..++..+.+ |+.++|..+|++... .+ ...|...+....+.|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 233589999999999987 4322 234556677777766 999999999988644 13 337888888888889
Q ss_pred ccccc
Q 040580 403 LRRNQ 407 (412)
Q Consensus 403 ~~~~a 407 (412)
+.+.+
T Consensus 478 ~~~~~ 482 (530)
T 2ooe_A 478 DLASI 482 (530)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87766
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=7.8e-14 Score=130.62 Aligned_cols=353 Identities=8% Similarity=-0.042 Sum_probs=242.4
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhc-----C---CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSE-----G---LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS-----S 109 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~ 109 (412)
....||.+...+...|+.++|++.|++..+. + -+....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999887541 1 1234678999999999999999999999887652 1
Q ss_pred -C-CcCHHHHHHHHHHHHcc--CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCC
Q 040580 110 -F-VLSVQVLSDLMDAYGRI--GCFNEIISIIDQVSCRNADLLPEVYSRAISC---FGKQGQLELMENTLKEMVSRGFSV 182 (412)
Q Consensus 110 -~-~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p 182 (412)
. .....++..+..++.+. +++++|.+.|++..+.+ +-++..+..+... +...++.++|++.+++..+. .|
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NP 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CC
Confidence 1 12356677666666554 57899999999998765 4556666655444 44567888999999888775 34
Q ss_pred -ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHH
Q 040580 183 -DSATGNAFIIYYSR----FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLW 257 (412)
Q Consensus 183 -~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 257 (412)
+...+..+...+.. .|+.++|...+++..... +.+..++..+...|...|++++|.+.+++.....++ +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 44555555555544 467889999999887765 446788999999999999999999999987555444 34667
Q ss_pred HHHHHHHhcC-------------------CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhC
Q 040580 258 NLLLLSYAGN-------------------FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318 (412)
Q Consensus 258 ~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 318 (412)
..+...|... +..+.|...|++..+.. +.+..++..+...+...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7666655322 23567788888777653 334677888999999999999999999998876
Q ss_pred CCCCCHh--hHHHHHH-HHHhccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhcCCcccHHHHHHHhccCchHHHHHH
Q 040580 319 SVGPDLV--TYGCVVD-AYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKRQRKWTYRKL 394 (412)
Q Consensus 319 g~~p~~~--~~~~li~-~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 394 (412)
...|... .+..+.. .....|+.++|.+.+++. ... |+.......+..+ ....+...+..|.++.+|..+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~~~~l-----~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKMKDKL-----QKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHHHHHH-----HHHHHHHHHHCC-CTTHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHH-----HHHHHHHHHhCCCCHHHHHHH
Confidence 5444322 1222221 234678889999998886 432 3322211111111 111222233456789999999
Q ss_pred HHHHHHcCcccccc
Q 040580 395 IAVYLKKQLRRNQI 408 (412)
Q Consensus 395 ~~~~~~~g~~~~a~ 408 (412)
+.+|...|++++|.
T Consensus 437 G~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 437 AFLQELNEKMQQAD 450 (472)
T ss_dssp HHHHHHHHHCC---
T ss_pred HHHHHHcCCHHHHH
Confidence 99999999999993
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=9.4e-14 Score=132.13 Aligned_cols=357 Identities=6% Similarity=-0.066 Sum_probs=251.4
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
+...|..++.. .+.|++++|..+|+++.+. .+-+...|...+..+.+.|++++|..+|++.++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 77789999984 7789999999999999986 34577889999999999999999999999999864 68888888876
Q ss_pred HH-HccCCHHHHHH----HHHHHhhc-CCC-CCHHhHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCChHH
Q 040580 123 AY-GRIGCFNEIIS----IIDQVSCR-NAD-LLPEVYSRAISCFGK---------QGQLELMENTLKEMVSRGFSVDSAT 186 (412)
Q Consensus 123 ~~-~~~~~~~~a~~----~~~~m~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~ 186 (412)
.. ...|+.+.|.+ +|++.... |.. .++..|...+....+ .|+++.|..+|++..+....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 44 34577766655 77766543 333 345588877776654 7899999999999988311111233
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHHHHhc----
Q 040580 187 GNAFIIYY-------------SRFGSLTEMETAYGRLK------RSR---HLID--------KEGIRAVSFTYLKE---- 232 (412)
Q Consensus 187 ~~~li~~~-------------~~~g~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~---- 232 (412)
|....... .+.+++..|..++..+. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43322211 12456777777776632 221 2444 24555555433221
Q ss_pred ccH----HHHHHHHHHHhcCCCCcchHHHHHHHHHHhc-------CCChH-------HHHHHHHHHHHcCCCCc-HhHHH
Q 040580 233 RKF----FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG-------NFKMK-------SLQREFMRMSEAGFHPD-LTTFN 293 (412)
Q Consensus 233 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~-~~~~~ 293 (412)
++. +++...+++.-...+. +...|..+...+.+ .|+++ +|..+|++..+. +.|+ ...|.
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~ 325 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYF 325 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHH
Confidence 222 3666677765443332 34888888888775 79987 899999998852 2454 77888
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHH--HHHHHHh
Q 040580 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPD--LVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDP--YVFEAFG 369 (412)
Q Consensus 294 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~--~li~~~~ 369 (412)
.++..+.+.|++++|..+|+++.+. .|+ ...|..+...+.+.|+.++|.++|++.......+...+. ..+....
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 8999999999999999999999884 554 257888888888999999999999998322222222221 1222224
Q ss_pred cCCcccHHHHHHHhc---cCchHHHHHHHHHHHHcCccccc
Q 040580 370 KGDFHSSSEAFLEFK---RQRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 370 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a 407 (412)
.|+.++|..+|++.. |.++..|..++..+.+.|+.++|
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~A 444 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT 444 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHH
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhH
Confidence 599999999998643 46789999999999999998877
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=7.8e-14 Score=139.30 Aligned_cols=345 Identities=13% Similarity=0.040 Sum_probs=225.4
Q ss_pred hccccccccccCCCChHHHHHHHHHhhcc------ChhhHHHHHHHHh---------------------------cCCCh
Q 040580 14 FKRFNVPSHQTHPKNGDLARKIIRYRKQE------GFVDCASLVEDLG---------------------------RKKKP 60 (412)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~---------------------------~~~~~ 60 (412)
......+.+|...|.+.+|.++++++.-. +....+.++.+.. ..|.+
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 34455667888999999999999987632 2234455554443 34444
Q ss_pred hHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|.+.|.+.
T Consensus 1066 EEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 55555554431 11111222221 344555555555433 23566777777777777777777777553
Q ss_pred hhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 040580 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220 (412)
Q Consensus 141 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 220 (412)
-++..|..++.++.+.|++++|.+.+...++.. ++....+.++.+|++.++++....+. + .++..
T Consensus 1132 ------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~a 1196 (1630)
T 1xi4_A 1132 ------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNA 1196 (1630)
T ss_pred ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH
Confidence 345667777777777777777777777665543 23323334777777777776533332 1 34555
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 040580 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFS 300 (412)
Q Consensus 221 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 300 (412)
.+..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.. +..+|..+-.+|.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHh
Confidence 6666777777777888887777763 577777788888888888877777652 4567777777777
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc---CCcccH
Q 040580 301 RMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK---GDFHSS 376 (412)
Q Consensus 301 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~---~~~~~a 376 (412)
..|++..|...... +..++..+..++..|.+.|.+++|..+++.- ... +-....|+-+...|++ ++..++
T Consensus 1262 e~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 77777777654432 4446677789999999999999999999776 333 2333445555555655 777788
Q ss_pred HHHHHHhcc--------CchHHHHHHHHHHHHcCcccccc
Q 040580 377 SEAFLEFKR--------QRKWTYRKLIAVYLKKQLRRNQI 408 (412)
Q Consensus 377 ~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~ 408 (412)
.+.|..-.. .+...|.-+.--|.+-|++++|.
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 888876544 46777999999999999999884
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=1e-13 Score=129.86 Aligned_cols=356 Identities=9% Similarity=-0.102 Sum_probs=236.0
Q ss_pred hccccccccccCCCChHHHHHHHHHhhc------------cChhhHHHHHHHHhcCCChhHHHHHHHHHHhc-----C-C
Q 040580 14 FKRFNVPSHQTHPKNGDLARKIIRYRKQ------------EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSE-----G-L 75 (412)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~ 75 (412)
..++.+...+...|++++|++.|++..+ ....+|+.+...|...|++++|...+++..+. + .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 4467778888899999999999987532 14567999999999999999999999887642 1 1
Q ss_pred C-CCHHhHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH---HHccCCHHHHHHHHHHHhhcCCCCCH
Q 040580 76 L-PDNSTLCALMLCYAN--NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA---YGRIGCFNEIISIIDQVSCRNADLLP 149 (412)
Q Consensus 76 ~-p~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~~~ 149 (412)
. ....++..+..++.. .+++++|...|++..+.. |-+...+..+..+ +...++.++|++.+++..+.+ +.++
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 1 235667666655555 457999999999999865 4456666665555 345677888999999887765 4556
Q ss_pred HhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 040580 150 EVYSRAISCFGK----QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAV 225 (412)
Q Consensus 150 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 225 (412)
.++..+...+.. .|++++|...+++...... .+...+..+...+.+.|++++|...++...+.. +-+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 677666655544 4678899999998877532 256778889999999999999999999998764 2356667666
Q ss_pred HHHHHhc-------------------ccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 040580 226 SFTYLKE-------------------RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFH 286 (412)
Q Consensus 226 i~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 286 (412)
...|... +.+++|...+++.....+. +..++..+...|...|++++|...|++..+....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 6655432 3356677777765433332 2367888999999999999999999999876433
Q ss_pred CcHh--HHHHHHH-HHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHH
Q 040580 287 PDLT--TFNIRAV-AFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPY 363 (412)
Q Consensus 287 p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~ 363 (412)
|... .+..+.. .....|+.++|...|.+..+ +.|+....... ...+.++++..-...+.+..++..
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3221 2222222 23577899999999998876 44543322222 223344444441112234566776
Q ss_pred HHHHHhc-CCcccHHHHHHHhcc
Q 040580 364 VFEAFGK-GDFHSSSEAFLEFKR 385 (412)
Q Consensus 364 li~~~~~-~~~~~a~~~~~~~~~ 385 (412)
+-..|.. |++++|.+.+.+..+
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHHHCC-----------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 6667766 999999999887544
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=2e-14 Score=119.92 Aligned_cols=196 Identities=13% Similarity=-0.031 Sum_probs=90.9
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 040580 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156 (412)
Q Consensus 77 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (412)
++...+..+...+.+.|++++|...|+..++.. +.+...+..+..++.+.|++++|...|++..+.+ +-++..+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344445555555555555555555555555543 3445555555555555555555555555555443 33344555555
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 040580 157 SCFGKQ-----------GQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRA 224 (412)
Q Consensus 157 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (412)
..+... |++++|+..|++..+. .| +...+..+..++...|++++|...|++..+.. .++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 555555 5555555555555543 22 23444455555555555555555555555444 34444444
Q ss_pred HHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHH
Q 040580 225 VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279 (412)
Q Consensus 225 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 279 (412)
+..+|...|++++|...+++.....++ +...+..+...+...|++++|+..|++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444444444444444443222221 224445555555555555555555444
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.9e-14 Score=119.93 Aligned_cols=221 Identities=9% Similarity=-0.070 Sum_probs=126.5
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CcC----HHHHH
Q 040580 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSF--VLS----VQVLS 118 (412)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~ 118 (412)
..|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...++...+... .|+ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456666677777777777777777777665 5667777777777777777777777777765321 111 46677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhc
Q 040580 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRF 197 (412)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 197 (412)
.+...+.+.|++++|.+.|++..... |+. ..+.+.|++++|...+++.... .| +...+..+...+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHh
Confidence 77777777777777777777776543 332 2344556667777777766664 22 334555666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHH
Q 040580 198 GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREF 277 (412)
Q Consensus 198 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 277 (412)
|++++|...++...+.. +.+..++..+...|...|++++|.+.+++.....++ +..+|..+...|...|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666666666665543 123444444444444444444444444433222111 1233444444444444444444444
Q ss_pred HHH
Q 040580 278 MRM 280 (412)
Q Consensus 278 ~~m 280 (412)
++.
T Consensus 231 ~~a 233 (258)
T 3uq3_A 231 DAA 233 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.6e-14 Score=120.62 Aligned_cols=225 Identities=9% Similarity=0.002 Sum_probs=168.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC--CC----HHhH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD--LL----PEVY 152 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~~ 152 (412)
...+..+...+...|++++|...|+...+.. .+..++..+..++...|++++|.+.+++..+.... ++ +.+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567778888888999999999999988876 77888888999999999999999999887654311 11 4678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040580 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232 (412)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 232 (412)
..+...+...|++++|...|++..+. .|+. ..+.+.|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88888888999999999999888874 3442 34556677888888888887653 22455677777778888
Q ss_pred ccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHH
Q 040580 233 RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSL 312 (412)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 312 (412)
|++++|.+.+++.....+. +..+|..+...|...|++++|...|++..+.. +.+..++..+...+.+.|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888775443333 34777778888888888888888888877653 334667777777888888888888887
Q ss_pred HHHHh
Q 040580 313 EHMKH 317 (412)
Q Consensus 313 ~~m~~ 317 (412)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=4.4e-14 Score=117.79 Aligned_cols=198 Identities=16% Similarity=0.062 Sum_probs=157.9
Q ss_pred cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 040580 42 EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121 (412)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 121 (412)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 355677888888999999999999999998764 3467888889999999999999999999998875 56778899999
Q ss_pred HHHHcc-----------CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 040580 122 DAYGRI-----------GCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAF 190 (412)
Q Consensus 122 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 190 (412)
.++.+. |++++|...|++..+.+ +-++..+..+-..+...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 999999 99999999999998765 4567788899999999999999999999998876 577888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 040580 191 IIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245 (412)
Q Consensus 191 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 245 (412)
..++...|++++|...|+...+.. +.+...+..+...+...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999988764 346788888999999999999999888864
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=2.5e-13 Score=115.82 Aligned_cols=164 Identities=8% Similarity=-0.042 Sum_probs=71.1
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 040580 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124 (412)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 124 (412)
..|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344444445555555555555555544432 2234444444444455555555555555444432 22344444444444
Q ss_pred HccCCHHHHHHHHHHHhhcCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 040580 125 GRIGCFNEIISIIDQVSCRNADL-LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEM 203 (412)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 203 (412)
...|++++|.+.|+++...+..| ++..+..+...+...|++++|...|++..+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 44444444444444444311111 222444444444444444444444444443211 1233333344444444444444
Q ss_pred HHHHHHHH
Q 040580 204 ETAYGRLK 211 (412)
Q Consensus 204 ~~~~~~~~ 211 (412)
...++.+.
T Consensus 195 ~~~~~~~~ 202 (252)
T 2ho1_A 195 RQYYDLFA 202 (252)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=2.5e-14 Score=123.69 Aligned_cols=183 Identities=7% Similarity=-0.167 Sum_probs=88.5
Q ss_pred cccCCCChHHHHHHHHHhhcc-------ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 040580 22 HQTHPKNGDLARKIIRYRKQE-------GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94 (412)
Q Consensus 22 ~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 94 (412)
.+...|++++|...++.+.+. +..+|..+...+...|++++|...|++..+.. +.+..++..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 444555666666666555431 33445555555555566666666665555542 2245555555555555555
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 040580 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKE 174 (412)
Q Consensus 95 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 174 (412)
+++|...|+...+.. +.+..++..+..++.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+++
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 555555555555543 3344555555555555555555555555554432 1211222222233344555555555544
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040580 175 MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRL 210 (412)
Q Consensus 175 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 210 (412)
..... .++...+ .++..+...++.++|...++..
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 44331 1122222 2333444444444444444444
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=3.9e-13 Score=112.23 Aligned_cols=198 Identities=8% Similarity=-0.101 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (412)
.+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.+++..+.. +.++.++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 33444444444444444444444444332 2234444444444444444444444444444332 223334444444444
Q ss_pred hc-CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHH
Q 040580 161 KQ-GQLELMENTLKEMVSRGFSVD-SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFML 238 (412)
Q Consensus 161 ~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 238 (412)
.. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 44 444444444444444211221 2334444444444444444444444444322 11233333333333333333333
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040580 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281 (412)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 281 (412)
.+.+++.....+..+...+..+...+...|+.+.|...++.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3333332211110112334444444444555555555555444
No 43
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=1.7e-12 Score=129.85 Aligned_cols=336 Identities=11% Similarity=0.068 Sum_probs=247.7
Q ss_pred ccccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 19 VPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA 98 (412)
Q Consensus 19 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 98 (412)
+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. ++.+|..+..++...|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 4566778999999999999875 22222333333 6678999999988552 588899999999999999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 99 QVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 99 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
...|... -|...|..++.++.+.|++++|.+.+...++.. +++...+.++.+|++.+++++...+. +
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9999553 467788889999999999999999999876644 44444556999999999988644442 2
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHH
Q 040580 179 GFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWN 258 (412)
Q Consensus 179 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (412)
.|+...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.. +..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHH
Confidence 346667778999999999999999999885 489999999999999999999998752 348999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhc
Q 040580 259 LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP-DLVTYGCVVDAYLDK 337 (412)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 337 (412)
.+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++.... +.| ....|+-+...|++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhC
Confidence 9999999999999998765542 33556677899999999999999999976553 333 344665666666653
Q ss_pred cccchHHHHHHhc-cC-CCCC------CcccHHHHHHHHhc-CCcccHHHHHHH-------------h--ccCchHHHHH
Q 040580 338 RLGRNLDFGLSKM-NL-DDSP------VVSTDPYVFEAFGK-GDFHSSSEAFLE-------------F--KRQRKWTYRK 393 (412)
Q Consensus 338 ~~~~~a~~~~~~m-~~-~~~p------~~~~~~~li~~~~~-~~~~~a~~~~~~-------------~--~~~~~~~~~~ 393 (412)
.+++..+.++.. +. ...| +...|.-++-.|.+ |+++.|...+.+ . ...|+..|.-
T Consensus 1328 -~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyyk 1406 (1630)
T 1xi4_A 1328 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYR 1406 (1630)
T ss_pred -CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHH
Confidence 334444444433 21 2222 34457777777777 899888733322 1 1256777777
Q ss_pred HHHHHHHcC
Q 040580 394 LIAVYLKKQ 402 (412)
Q Consensus 394 l~~~~~~~g 402 (412)
.++-|...+
T Consensus 1407 ai~Fyl~~~ 1415 (1630)
T 1xi4_A 1407 AIQFYLEFK 1415 (1630)
T ss_pred HHHHHHhhC
Confidence 777776555
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=3.2e-14 Score=123.01 Aligned_cols=248 Identities=12% Similarity=-0.004 Sum_probs=196.1
Q ss_pred hcCCChhHHHHHHHHHHhcCCC---CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHH
Q 040580 55 GRKKKPHLAHQLVNTVKSEGLL---PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131 (412)
Q Consensus 55 ~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 131 (412)
...|++++|++.|+++.+.... .+..++..+...+...|++++|...|+.+.+.+ +.+..+|..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 4568899999999999886421 246778889999999999999999999999875 567899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040580 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211 (412)
Q Consensus 132 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 211 (412)
+|.+.|++..+.. +.++.++..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999998765 456779999999999999999999999999885 4555555556666677899999999998877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCc---chHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc
Q 040580 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL---GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD 288 (412)
Q Consensus 212 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 288 (412)
... +++...+ .++..+...++.++|.+.+.+.....+.. +..++..+...|...|++++|...|++..+. .|+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 654 2333333 47777888888899999998864433321 1478899999999999999999999999865 454
Q ss_pred HhHHHHHHHHHHccCChhHHHHHH
Q 040580 289 LTTFNIRAVAFSRMSMFWDLHLSL 312 (412)
Q Consensus 289 ~~~~~~ll~~~~~~g~~~~a~~~~ 312 (412)
. +.....++...|++++|.+-+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 3 223355677788888887765
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=1.1e-12 Score=111.92 Aligned_cols=210 Identities=10% Similarity=-0.027 Sum_probs=179.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (412)
...+..+...+...|++++|...|+.+.+.. +.+..++..+...+.+.|++++|.+.|+++.+.. +.++..+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5667888889999999999999999998875 5678899999999999999999999999998765 4567799999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHH
Q 040580 159 FGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM 237 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 237 (412)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++...+.. +.+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998844455 45677888899999999999999999988765 3468889999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHH
Q 040580 238 LGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNI 294 (412)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 294 (412)
|.+.+++.....+. +...+..+...+...|+.++|...++++.+. .|+...+..
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 99999987554443 4578888999999999999999999999876 465544433
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=4.4e-12 Score=109.57 Aligned_cols=223 Identities=9% Similarity=-0.054 Sum_probs=125.5
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYAN----NGFVLEAQVVWEELLSSSFVLSVQVLS 118 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 118 (412)
+..++..+...+...|++++|++.|++..+. -+..++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555556666666666666666666652 244555556666666 666666666666666654 455566
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 040580 119 DLMDAYGR----IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK----QGQLELMENTLKEMVSRGFSVDSATGNAF 190 (412)
Q Consensus 119 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 190 (412)
.+...|.. .+++++|.+.|++..+.+ ++..+..+-..|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666666666666665543 44556666666665 666666666666665543 33444445
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc
Q 040580 191 IIYYSR----FGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266 (412)
Q Consensus 191 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 266 (412)
...+.. .+++++|...|+...+.+ +. ..+..+...|..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~-----------------------------------~a~~~lg~~~~~ 194 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DS-----------------------------------PGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-----------------------------------HHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH-----------------------------------HHHHHHHHHHHc
Confidence 555555 566666666666555443 23 344444444444
Q ss_pred ----CCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHc----cCChhHHHHHHHHHHhC
Q 040580 267 ----NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR----MSMFWDLHLSLEHMKHE 318 (412)
Q Consensus 267 ----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~ 318 (412)
.+++++|+..|++..+.+ +...+..+...|.+ .+++++|...|++..+.
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 555555555555555432 13344444555555 55555555555555443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=1.1e-12 Score=109.58 Aligned_cols=203 Identities=11% Similarity=-0.045 Sum_probs=166.2
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45677888888999999999999999988763 3467888889999999999999999999988865 557888999999
Q ss_pred HHHcc-CCHHHHHHHHHHHhhcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 040580 123 AYGRI-GCFNEIISIIDQVSCRNADLL-PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200 (412)
Q Consensus 123 ~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 200 (412)
.+... |++++|.+.++++.+.+..|+ +..+..+...+...|++++|+..++++.+... .+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999887222222 45888888999999999999999999887532 2467788888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Q 040580 201 TEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG 248 (412)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 248 (412)
++|...++...+.....+...+..+...+...|+.+++..+++.+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999887653256777888888888899999999988887533
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=6.5e-12 Score=108.52 Aligned_cols=223 Identities=8% Similarity=-0.084 Sum_probs=145.9
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR----IGCFNEIISIIDQVSCRNADLLPEVYS 153 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 153 (412)
++.++..+...+...|++++|...|+...+. .+...+..+...|.. .+++++|.+.|++..+.+ ++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555555566666666666666666552 234455555555555 666666666666555443 344555
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 040580 154 RAISCFGK----QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR----FGSLTEMETAYGRLKRSRHLIDKEGIRAV 225 (412)
Q Consensus 154 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 225 (412)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+.+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------- 144 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----------- 144 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----------
Confidence 55555555 555666665555555543 34444445555555 555555555555544432
Q ss_pred HHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHc
Q 040580 226 SFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAG----NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR 301 (412)
Q Consensus 226 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 301 (412)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 145 ---------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 145 ---------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHH 194 (273)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred ---------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 23566666667766 889999999999988764 45677788888988
Q ss_pred ----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----ccccchHHHHHHhc-cCC
Q 040580 302 ----MSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD----KRLGRNLDFGLSKM-NLD 353 (412)
Q Consensus 302 ----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m-~~~ 353 (412)
.+++++|...+++..+.+. ...+..+-..|.. .++.++|.+.+++. ..+
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9999999999999988653 5677778888888 89999999999887 544
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=2e-13 Score=115.57 Aligned_cols=166 Identities=10% Similarity=0.018 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 33445555555566666666666666665532 2345555556666666666666666666665543 334555666666
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 202 (412)
.+...|++++|.+.++++.+.. +.++..+..+...+...|++++|...+++..+... .+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666655443 33445555555666666666666666665554321 134445555555555555555
Q ss_pred HHHHHHHHHh
Q 040580 203 METAYGRLKR 212 (412)
Q Consensus 203 a~~~~~~~~~ 212 (412)
|...++...+
T Consensus 178 A~~~~~~~~~ 187 (243)
T 2q7f_A 178 ALSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=1.8e-12 Score=111.84 Aligned_cols=232 Identities=9% Similarity=-0.037 Sum_probs=125.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc--CHHHHHHHHHHH
Q 040580 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVL--SVQVLSDLMDAY 124 (412)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~ 124 (412)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.+-.| ...+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444556666677777777777666542 2234466666666667777777777777666632111 123466666667
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHH
Q 040580 125 GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEM 203 (412)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a 203 (412)
...|++++|.+.|++..+.. +.++.+|..+...+...|++++|+..|++..+. .| +...+..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777666544 334456666666667777777777766666554 23 334444444233334466666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhccc---HHHHHHHHHHHhcCC---CCc----chHHHHHHHHHHhcCCChHHH
Q 040580 204 ETAYGRLKRSRHLIDKEGIRAVSFTYLKERK---FFMLGEFLRDVGLGR---KDL----GNLLWNLLLLSYAGNFKMKSL 273 (412)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~a 273 (412)
...|+...+.. +.+...+..+...+...|+ +++|...+++..... +++ -..+|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 66666666543 1224444444444444444 444444443321100 100 013445555555555555555
Q ss_pred HHHHHHHHHc
Q 040580 274 QREFMRMSEA 283 (412)
Q Consensus 274 ~~~~~~m~~~ 283 (412)
...|++..+.
T Consensus 241 ~~~~~~al~~ 250 (272)
T 3u4t_A 241 DAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5555555543
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=2.9e-13 Score=114.58 Aligned_cols=201 Identities=7% Similarity=-0.054 Sum_probs=121.8
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 040580 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156 (412)
Q Consensus 77 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (412)
....+|..+...+...|++++|...|+.+.+.. +.+..++..+...+.+.|++++|.+.|++..+.. +.++.++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345667777778888888888888888888754 5567888888888888888888888888887664 44566888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHH
Q 040580 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF 236 (412)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 236 (412)
..+...|++++|...+++..+... .+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888877532 255667777777888888888888888776643 224555555555555555555
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040580 237 MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282 (412)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (412)
+|.+.+++.....+. +..++..+...|...|++++|...+++..+
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 555555554322221 234555555555555555555555555544
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=5.6e-13 Score=120.39 Aligned_cols=277 Identities=7% Similarity=-0.046 Sum_probs=211.0
Q ss_pred hhccccccccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 040580 13 KFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92 (412)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 92 (412)
++.|..++..+...|....+. -.....+...|+.+...+...|++++|++.|++..+.. +-+...|+.+..++...
T Consensus 69 ~~~w~di~~~~~~~~~~~~~a---i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~ 144 (382)
T 2h6f_A 69 RAEWADIDPVPQNDGPNPVVQ---IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSL 144 (382)
T ss_dssp CGGGTTSCCCCCCCCSSCSSE---ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred CcccccCCCCCCCCCcCcchh---hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHc
Confidence 345666666666655421000 00011255678888888899999999999999998864 33578889999999999
Q ss_pred CC-hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 040580 93 GF-VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENT 171 (412)
Q Consensus 93 ~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 171 (412)
|+ +++|+..|++.++.. +-+...|+.+..++.+.|++++|+..|+++.+.+ +-++..|..+..++.+.|++++|+..
T Consensus 145 g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~ 222 (382)
T 2h6f_A 145 QKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQY 222 (382)
T ss_dssp TCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHH
Confidence 96 999999999999876 5678899999999999999999999999998876 56777999999999999999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcc--cHHHHHHHHH
Q 040580 172 LKEMVSRGFSVDSATGNAFIIYYSR-FGSLTEM-----ETAYGRLKRSRHLIDKEGIRAVSFTYLKER--KFFMLGEFLR 243 (412)
Q Consensus 172 ~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~ 243 (412)
|+++.+.... +...|+.+..++.+ .|..++| ...++...+.. +-+...|+.+...+...| ++++|.+.+.
T Consensus 223 ~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~ 300 (382)
T 2h6f_A 223 VDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLL 300 (382)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHH
Confidence 9999886433 67788888888888 6665777 47788877654 236778888888888887 6899999998
Q ss_pred HHhcCCCCcchHHHHHHHHHHhcCC---------ChHHHHHHHHHH-HHcCCCCcH-hHHHHHHHHHHc
Q 040580 244 DVGLGRKDLGNLLWNLLLLSYAGNF---------KMKSLQREFMRM-SEAGFHPDL-TTFNIRAVAFSR 301 (412)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~m-~~~~~~p~~-~~~~~ll~~~~~ 301 (412)
++ ...++ +...+..+...|.+.| ..++|+.+|+++ .+. .|.. .-|..+...+..
T Consensus 301 ~~-~~~p~-~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 301 DL-QPSHS-SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HH-TTTCC-CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHH
T ss_pred Hh-ccCCC-CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHH
Confidence 88 22222 4578888888888864 358999999998 543 5553 445555555543
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.6e-12 Score=117.41 Aligned_cols=249 Identities=7% Similarity=-0.055 Sum_probs=198.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQVSCRNADLLPEVYSRAIS 157 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (412)
...|..+...+.+.|++++|+..++..++.. +-+..+|+.+..++.+.|+ +++|++.|++..+.+ +-++..|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567778888889999999999999999875 5678899999999999996 999999999998876 556779999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cccHH
Q 040580 158 CFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLK-ERKFF 236 (412)
Q Consensus 158 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~ 236 (412)
.+...|++++|+..|++..+.... +...|..+..++.+.|++++|...++.+.+... -+...|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999886432 678888999999999999999999999998763 378889999999998 56657
Q ss_pred HH-----HHHHHHHhcCCCCcchHHHHHHHHHHhcCC--ChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccC------
Q 040580 237 ML-----GEFLRDVGLGRKDLGNLLWNLLLLSYAGNF--KMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS------ 303 (412)
Q Consensus 237 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g------ 303 (412)
+| .+.+++.-...++ +..+|+.+...+...| ++++|+..+.++ +. -..+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 4666664333333 3488999999999988 689999999887 32 2344677888888888864
Q ss_pred ---ChhHHHHHHHHH-HhCCCCC-CHhhHHHHHHHHHh
Q 040580 304 ---MFWDLHLSLEHM-KHESVGP-DLVTYGCVVDAYLD 336 (412)
Q Consensus 304 ---~~~~a~~~~~~m-~~~g~~p-~~~~~~~li~~~~~ 336 (412)
..++|.++++++ .+ +.| ....|..+...+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 258899999998 54 345 34566666666654
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=1.2e-12 Score=112.95 Aligned_cols=232 Identities=10% Similarity=-0.017 Sum_probs=137.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH----hHHHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE----VYSRA 155 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l 155 (412)
..+......+...|++++|...|+...+.. +.+..++..+..++...|++++|.+.+++..+.. .++. +|..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHH
Confidence 344455666777777777777777777654 3345567777777777777777777777776622 2332 36777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccH
Q 040580 156 ISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235 (412)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (412)
...+...|++++|+..|++..+.... +...+..+...+...|++++|...++...+.. +.+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777664221 44566677777777777777777777766552 23445555555223333466
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcC-CCCc------HhHHHHHHHHHHccCCh
Q 040580 236 FMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK---MKSLQREFMRMSEAG-FHPD------LTTFNIRAVAFSRMSMF 305 (412)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~ll~~~~~~g~~ 305 (412)
++|.+.+++.....++ +...+..+...+...|+ .++|...+++..+.. -.|+ ..+|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 6666666654333322 13455555555555555 555655555554321 1122 13445555556666666
Q ss_pred hHHHHHHHHHHh
Q 040580 306 WDLHLSLEHMKH 317 (412)
Q Consensus 306 ~~a~~~~~~m~~ 317 (412)
++|...+++..+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=2.1e-12 Score=118.57 Aligned_cols=272 Identities=11% Similarity=-0.038 Sum_probs=188.9
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCcCHH
Q 040580 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDN----STLCALMLCYANNGFVLEAQVVWEELLSS----S-FVLSVQ 115 (412)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~ 115 (412)
..+..+...+...|++++|+..|++..+.+. .+. ..+..+...+...|++++|...+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3455667788899999999999999988642 233 46888888999999999999999988753 1 133457
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcC-----CCCCHHhHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRN-----ADLLPEVYSRAISCFGKQGQ-----------------LELMENTLK 173 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~ 173 (412)
++..+...|...|++++|.+.+++..+.. ......++..+...+...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 88899999999999999999998875431 11123378888889999999 999998888
Q ss_pred HHHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcccHHHHHHHHH
Q 040580 174 EMVSR----GFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL-ID----KEGIRAVSFTYLKERKFFMLGEFLR 243 (412)
Q Consensus 174 ~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~ 243 (412)
+..+. +-.| ...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76442 1112 2346777888888999999999998887653210 11 2356667777777788777777776
Q ss_pred HHhcCC---CC--cchHHHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHccCChhHHHHHHH
Q 040580 244 DVGLGR---KD--LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA----GFHP-DLTTFNIRAVAFSRMSMFWDLHLSLE 313 (412)
Q Consensus 244 ~~~~~~---~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 313 (412)
+..... .+ ....++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 532111 11 11356667777777777777777777766532 1111 12356666777777777777777777
Q ss_pred HHHh
Q 040580 314 HMKH 317 (412)
Q Consensus 314 ~m~~ 317 (412)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=2.8e-11 Score=106.57 Aligned_cols=217 Identities=9% Similarity=-0.076 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHhcCCCCCHHhHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 040580 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYA-------NNGFV-------LEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126 (412)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 126 (412)
++|..+|++..... +-+...|..+...+. +.|++ ++|..+|++.++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777642 345666776666654 34665 7777777777763113455677777777777
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH-HhcCCHHHHH
Q 040580 127 IGCFNEIISIIDQVSCRNADLLPE-VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY-SRFGSLTEME 204 (412)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~a~ 204 (412)
.|++++|.++|++..+.. +-++. +|..+...+.+.|++++|..+|++..+... ++...|....... ...|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 788888888887776532 22344 677777777777777777777777776532 2333333222221 1257777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC-CCc--chHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040580 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGR-KDL--GNLLWNLLLLSYAGNFKMKSLQREFMRMS 281 (412)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 281 (412)
.+|+...+.. +-+...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7776665532 1234444444444444444444444444432210 011 12344444444444444444444444444
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=1.1e-12 Score=119.85 Aligned_cols=298 Identities=12% Similarity=-0.004 Sum_probs=205.6
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc-C
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD----NSTLCALMLCYANNGFVLEAQVVWEELLSS----SFVL-S 113 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~ 113 (412)
....+......+...|++++|...|++..+.+ +.+ ...+..+...+...|++++|...++...+. +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455666777888889999999998888763 223 356777888888889999998888876542 2222 3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC-CC----HHhHHHHHHHHHhcCC--------------------hHHH
Q 040580 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD-LL----PEVYSRAISCFGKQGQ--------------------LELM 168 (412)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~a 168 (412)
..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 567888888888899999998888876543110 11 2377778888888888 8888
Q ss_pred HHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcccHHHH
Q 040580 169 ENTLKEMVSR----GFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH-LID----KEGIRAVSFTYLKERKFFML 238 (412)
Q Consensus 169 ~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a 238 (412)
...+++..+. +-.| ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888776432 2122 234677777888888999999888888764311 112 23677778888888999888
Q ss_pred HHHHHHHhcC---CCC--cchHHHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCc-HhHHHHHHHHHHccCChhHH
Q 040580 239 GEFLRDVGLG---RKD--LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA----GFHPD-LTTFNIRAVAFSRMSMFWDL 308 (412)
Q Consensus 239 ~~~~~~~~~~---~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a 308 (412)
.+.+++.... ..+ ....++..+...|...|++++|...+++..+. +-.+. ..++..+...+...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888764211 111 11367788889999999999999999887642 11111 45677788889999999999
Q ss_pred HHHHHHHHh----CCCCC-CHhhHHHHHHHHHhccccc
Q 040580 309 HLSLEHMKH----ESVGP-DLVTYGCVVDAYLDKRLGR 341 (412)
Q Consensus 309 ~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~~~~~ 341 (412)
...+++..+ .+..+ ...++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999888654 23222 2455666666777766664
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=2.1e-12 Score=118.49 Aligned_cols=270 Identities=10% Similarity=-0.068 Sum_probs=197.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhcC--C---CCCHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSV----QVLSDLMDAYGRIGCFNEIISIIDQVSCRN--A---DLLPE 150 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~---~~~~~ 150 (412)
..+..+...+...|++++|...|+++.+.+ +.+. .++..+...|...|++++|.+.+++..+.. . +....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345556677889999999999999999864 3333 578899999999999999999999876531 1 12234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSR----GFSV-DSATGNAFIIYYSRFGS-----------------LTEMETAYG 208 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~-----------------~~~a~~~~~ 208 (412)
++..+...|...|++++|...+++..+. +-.| ...++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888899999999999999999987653 1122 24567788888999999 999998888
Q ss_pred HHHhC----CCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCC---C--cchHHHHHHHHHHhcCCChHHHHHHHH
Q 040580 209 RLKRS----RHLI-DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK---D--LGNLLWNLLLLSYAGNFKMKSLQREFM 278 (412)
Q Consensus 209 ~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~li~~~~~~g~~~~a~~~~~ 278 (412)
+..+. +..+ ...++..+...|...|++++|.+.+++.....+ + ....++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 2111 234777788888899999999988887422111 1 112477888889999999999999998
Q ss_pred HHHHcCC-CC----cHhHHHHHHHHHHccCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhccccchHHHHHH
Q 040580 279 RMSEAGF-HP----DLTTFNIRAVAFSRMSMFWDLHLSLEHMKHE----SVGP-DLVTYGCVVDAYLDKRLGRNLDFGLS 348 (412)
Q Consensus 279 ~m~~~~~-~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~ 348 (412)
+..+..- .. ...++..+...+...|++++|...+++..+. +..+ ...++..+...|.+.|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8764210 01 1456777888888999999999988887642 1111 24467777888888889888888887
Q ss_pred hc
Q 040580 349 KM 350 (412)
Q Consensus 349 ~m 350 (412)
+.
T Consensus 368 ~a 369 (411)
T 4a1s_A 368 QH 369 (411)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=3.5e-12 Score=116.57 Aligned_cols=274 Identities=8% Similarity=-0.102 Sum_probs=202.3
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCC
Q 040580 76 LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS----VQVLSDLMDAYGRIGCFNEIISIIDQVSCR----NADL 147 (412)
Q Consensus 76 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~ 147 (412)
.+....+......+...|++++|...|+...+.+ +.+ ..++..+...+...|++++|...+++.... +-.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4456677778888999999999999999999864 333 467889999999999999999999986442 1111
Q ss_pred -CHHhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCC--------------------HH
Q 040580 148 -LPEVYSRAISCFGKQGQLELMENTLKEMVSR----GFSV-DSATGNAFIIYYSRFGS--------------------LT 201 (412)
Q Consensus 148 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~--------------------~~ 201 (412)
...++..+...+...|++++|...+++..+. +-.+ ...++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 1337888889999999999999999987653 1111 13477788888999999 99
Q ss_pred HHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHhcC---CCC--cchHHHHHHHHHHhcCCChH
Q 040580 202 EMETAYGRLKRS----RHLI-DKEGIRAVSFTYLKERKFFMLGEFLRDVGLG---RKD--LGNLLWNLLLLSYAGNFKMK 271 (412)
Q Consensus 202 ~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~--~~~~~~~~li~~~~~~g~~~ 271 (412)
+|...++...+. +..| ...++..+...|...|++++|.+.+++.... ..+ ....++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999888876542 2111 2346778888889999999999888874221 111 11247888889999999999
Q ss_pred HHHHHHHHHHHc----CCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhccccc
Q 040580 272 SLQREFMRMSEA----GFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKHE----SVGP-DLVTYGCVVDAYLDKRLGR 341 (412)
Q Consensus 272 ~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~ 341 (412)
+|...+++..+. +-.+. ..++..+...+...|++++|...+++..+. +-.+ ...++..+...|.+.|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999887632 11111 456778888899999999999998887642 2112 2556777888888899999
Q ss_pred hHHHHHHhc
Q 040580 342 NLDFGLSKM 350 (412)
Q Consensus 342 ~a~~~~~~m 350 (412)
+|.+.+++.
T Consensus 325 ~A~~~~~~a 333 (406)
T 3sf4_A 325 QAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888775
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=2.9e-12 Score=113.71 Aligned_cols=270 Identities=12% Similarity=-0.024 Sum_probs=170.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-cCHHHH
Q 040580 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD----NSTLCALMLCYANNGFVLEAQVVWEELLSS----SFV-LSVQVL 117 (412)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~ 117 (412)
+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|...++...+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 44456667788888888888888877632 23 356777888888888888888888876542 212 235677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCC-CCC----HHhHHHHHHHHHhcCC--------------------hHHHHHHH
Q 040580 118 SDLMDAYGRIGCFNEIISIIDQVSCRNA-DLL----PEVYSRAISCFGKQGQ--------------------LELMENTL 172 (412)
Q Consensus 118 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~ 172 (412)
..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8888888888899888888887654211 011 2267777788888888 88888888
Q ss_pred HHHHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcccHHHHHHHH
Q 040580 173 KEMVSR----GFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRH-LID----KEGIRAVSFTYLKERKFFMLGEFL 242 (412)
Q Consensus 173 ~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~ 242 (412)
++.... +-.| ....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 775432 1111 234566677778888888888888877654210 011 225566666666677777776666
Q ss_pred HHHhcC---CCC--cchHHHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCc-HhHHHHHHHHHHccCChhHHHHHH
Q 040580 243 RDVGLG---RKD--LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA----GFHPD-LTTFNIRAVAFSRMSMFWDLHLSL 312 (412)
Q Consensus 243 ~~~~~~---~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 312 (412)
++.... ..+ ....++..+...|...|++++|...+++..+. +-.+. ..++..+...+.+.|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 653111 000 11345566666677777777777776665432 11111 234555666666677777777766
Q ss_pred HHHHh
Q 040580 313 EHMKH 317 (412)
Q Consensus 313 ~~m~~ 317 (412)
++..+
T Consensus 327 ~~a~~ 331 (338)
T 3ro2_A 327 EKHLE 331 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=3.1e-12 Score=113.50 Aligned_cols=270 Identities=9% Similarity=-0.102 Sum_probs=191.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhc----CCC-CCHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLS----VQVLSDLMDAYGRIGCFNEIISIIDQVSCR----NAD-LLPE 150 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~ 150 (412)
..+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|.+.+++.... +-. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 344556677889999999999999998864 233 467889999999999999999999886543 111 1234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCC--------------------HHHHHH
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSRGF-SVD----SATGNAFIIYYSRFGS--------------------LTEMET 205 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~ 205 (412)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788888999999999999999988754311 112 3467778888888999 888888
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-----CCCcchHHHHHHHHHHhcCCChHHHHH
Q 040580 206 AYGRLKRS----RHLI-DKEGIRAVSFTYLKERKFFMLGEFLRDVGLG-----RKDLGNLLWNLLLLSYAGNFKMKSLQR 275 (412)
Q Consensus 206 ~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~ 275 (412)
.+++..+. +..+ ...++..+...+...|++++|.+.+++.... .......++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776532 2111 2346777778888888998888888764211 111112477778888888889988888
Q ss_pred HHHHHHHcCC-CCc----HhHHHHHHHHHHccCChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHhccccchHHH
Q 040580 276 EFMRMSEAGF-HPD----LTTFNIRAVAFSRMSMFWDLHLSLEHMKHE----SVG-PDLVTYGCVVDAYLDKRLGRNLDF 345 (412)
Q Consensus 276 ~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~~~~~~a~~ 345 (412)
.+++..+..- .++ ..++..+...+...|++++|...+++..+. +-. ....++..+...|.+.|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 8887663210 111 446667777888888888888888776542 111 124466677778888888888888
Q ss_pred HHHhc
Q 040580 346 GLSKM 350 (412)
Q Consensus 346 ~~~~m 350 (412)
.+++.
T Consensus 325 ~~~~a 329 (338)
T 3ro2_A 325 FAEKH 329 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88776
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=9.2e-12 Score=113.25 Aligned_cols=160 Identities=10% Similarity=-0.080 Sum_probs=80.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC-C-----CHHhHH
Q 040580 85 LMLCYANNGFVLEAQVVWEELLSS----SFVL-SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD-L-----LPEVYS 153 (412)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-----~~~~~~ 153 (412)
....+...|++++|...|+...+. +-++ ...++..+...|...|+++.|.+.+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455566666666666666542 1111 2345666666666666666666666655432100 0 012555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 040580 154 RAISCFGKQGQLELMENTLKEMVSR----GFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRS----RH-LIDKEGIR 223 (412)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 223 (412)
.+...|...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5556666666666666666555432 1011 1134555555666666666666666555441 21 22234444
Q ss_pred HHHHHHHhcccHHHHHHHHHH
Q 040580 224 AVSFTYLKERKFFMLGEFLRD 244 (412)
Q Consensus 224 ~li~~~~~~~~~~~a~~~~~~ 244 (412)
.+...|.+.|++++|.+.+++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 555555555555555555444
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=7.7e-12 Score=116.21 Aligned_cols=341 Identities=10% Similarity=-0.023 Sum_probs=203.5
Q ss_pred ccccccCCCChHHHHHHHHHhhcc-ChhhHHHHHHHHhcCCCh---hHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-
Q 040580 19 VPSHQTHPKNGDLARKIIRYRKQE-GFVDCASLVEDLGRKKKP---HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG- 93 (412)
Q Consensus 19 l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~- 93 (412)
+...+.+.|++++|...|++..++ +..++..+...+...|+. ++|...|++..+. ++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 344556778889999998887654 556666666666667777 8888888887753 5566666666555554
Q ss_pred ----ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHH---HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChH
Q 040580 94 ----FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN---EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166 (412)
Q Consensus 94 ----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 166 (412)
++++|...|+...+.|. ++ .+..|...|...+..+ .+.+.+......+. +..+..+...|...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 77889999988888763 33 5666777776655433 34455555544442 456777777777777655
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----ccHHHHH
Q 040580 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFG---SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE----RKFFMLG 239 (412)
Q Consensus 167 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~ 239 (412)
++......+.+.-...+...+..+...|.+.| +.++|...|+...+.| .++...+..+...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 55554443333222223336777777888888 8888888888888877 34555556666666554 6888898
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHH-H--hcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccC-----ChhHHHHH
Q 040580 240 EFLRDVGLGRKDLGNLLWNLLLLS-Y--AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMS-----MFWDLHLS 311 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~ 311 (412)
+.|++.. +. +...+..+... | ...+++++|+..|++..+.| +...+..|-..|. .| ++++|...
T Consensus 238 ~~~~~aa--~g--~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA--PG--YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG--GG--STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc--CC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 8888876 22 23677777666 4 45788899999988888766 5556666666666 44 88888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHh----ccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc-----CCcccHHHHHH
Q 040580 312 LEHMKHESVGPDLVTYGCVVDAYLD----KRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-----GDFHSSSEAFL 381 (412)
Q Consensus 312 ~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-----~~~~~a~~~~~ 381 (412)
|++.. . -+...+..|-..|.. ..+.++|.+++++. ..+. |+ ....|-..|.. .+..+|...+.
T Consensus 310 ~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 88765 2 245555566656655 33777888888887 4443 22 22233334432 35666666666
Q ss_pred Hhcc
Q 040580 382 EFKR 385 (412)
Q Consensus 382 ~~~~ 385 (412)
.-..
T Consensus 383 ~A~~ 386 (452)
T 3e4b_A 383 LAKA 386 (452)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5433
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=1.1e-10 Score=102.66 Aligned_cols=217 Identities=6% Similarity=-0.054 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc-------cCCH-------HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 040580 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGR-------IGCF-------NEIISIIDQVSCRNADLLPEVYSRAISCFGK 161 (412)
Q Consensus 96 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 161 (412)
++|..+|++.++.. +.+...|..++..+.. .|++ ++|..+|++..+.-.+-++..|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888888764 5677888888887763 4775 8899999988763113455688888888999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-hH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcccHHHH
Q 040580 162 QGQLELMENTLKEMVSRGFSVD-SA-TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL-KERKFFML 238 (412)
Q Consensus 162 ~g~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a 238 (412)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+...+... ++...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998874 454 33 788888888888999999999998887642 34444443333322 25788888
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCc--HhHHHHHHHHHHccCChhHHHHHHHHH
Q 040580 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG-FHPD--LTTFNIRAVAFSRMSMFWDLHLSLEHM 315 (412)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m 315 (412)
.++|++.-...++ +...|..++..+.+.|++++|..+|++..+.. +.|+ ...|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888775333222 34777888888888888888888888877652 3553 456677777777788888888888777
Q ss_pred Hh
Q 040580 316 KH 317 (412)
Q Consensus 316 ~~ 317 (412)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 65
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=3.7e-12 Score=118.32 Aligned_cols=336 Identities=10% Similarity=0.046 Sum_probs=214.3
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 040580 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV---LEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126 (412)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 126 (412)
+...+.+.|++++|.++|++..+.| +...+..|...+...|+. ++|...|+...+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4556677899999999999998876 344455566666777887 8999999988854 56667777775555
Q ss_pred cC-----CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 040580 127 IG-----CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLEL---MENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198 (412)
Q Consensus 127 ~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 198 (412)
.+ +.++|.+.|++..+.+. +..+..|...|...+..++ +.+.+......|. ......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 55 78899999999987663 2377777777776665443 4445555544443 445556777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC----CChH
Q 040580 199 SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER---KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN----FKMK 271 (412)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~ 271 (412)
.++++......+.+.-...++..+..+...|...| +.++|.+.|++....++. +...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 55544444333332222233348888888898899 999999999987665554 234446677777654 7999
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHH-H--HccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcc-----ccchH
Q 040580 272 SLQREFMRMSEAGFHPDLTTFNIRAVA-F--SRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKR-----LGRNL 343 (412)
Q Consensus 272 ~a~~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-----~~~~a 343 (412)
+|+..|++.. .| +...+..+-.. + ...++.++|...|++..+.| +...+..|-..|. .| +.++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999987 43 34455555555 3 56899999999999998877 4556666666666 44 88889
Q ss_pred HHHHHhccCCCCCCcccHHHHHHHHhcC-----CcccHHHHHHHhcc-CchHHHHHHHHHHHH----cCcccccccc
Q 040580 344 DFGLSKMNLDDSPVVSTDPYVFEAFGKG-----DFHSSSEAFLEFKR-QRKWTYRKLIAVYLK----KQLRRNQIFW 410 (412)
Q Consensus 344 ~~~~~~m~~~~~p~~~~~~~li~~~~~~-----~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~w 410 (412)
.+.|++.. . -+......|-..|..| +..+|.+.+.+-.. .++.....|...|.. .++.++|..|
T Consensus 307 ~~~~~~Aa-~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 307 EAHFEKAV-G--REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHHTTT-T--TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHHh-C--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 99998876 2 2333333444455443 88889999988655 678888888888886 3467777666
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=1.4e-12 Score=114.62 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=133.2
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhc-------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC------C
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSE-------GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS------S 109 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~ 109 (412)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...++...+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4456788888999999999999999998763 22334567888889999999999999999988764 2
Q ss_pred -CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhc------CC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 040580 110 -FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR------NA-DLLPEVYSRAISCFGKQGQLELMENTLKEMVSR--- 178 (412)
Q Consensus 110 -~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 178 (412)
.+....++..+...+...|++++|.+.|++..+. +- +....++..+...+...|++++|+..+++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2334678899999999999999999999988654 11 122337888888999999999999999988664
Q ss_pred ---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040580 179 ---GFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 179 ---g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 212 (412)
+-.| ...++..+...+...|++++|...+++..+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233 235677888889999999999999988875
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=5e-11 Score=96.25 Aligned_cols=130 Identities=15% Similarity=0.101 Sum_probs=57.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (412)
+..|..+...+.+.|++++|...|++.++.. |-+..++..+..+|.+.|++++|...++...... +-++..+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 3444444444555555555555555444433 3344444444444555555555554444444332 2233344444444
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040580 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 211 (412)
+...++++.+...+.+..+... -+...+..+...+.+.|++++|...|++..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 4444444444444444443211 123333444444444444444444444443
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=6.1e-11 Score=95.74 Aligned_cols=167 Identities=13% Similarity=0.021 Sum_probs=139.8
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
++..|..+...+.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45678888999999999999999999988764 3367888889999999999999999999888765 556778888888
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 202 (412)
.+...++++.|.+.+++..... +.++..+..+...+.+.|++++|++.|++..+... .+...+..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 8999999999999999887765 55677888889999999999999999998887532 256778888889999999999
Q ss_pred HHHHHHHHHhC
Q 040580 203 METAYGRLKRS 213 (412)
Q Consensus 203 a~~~~~~~~~~ 213 (412)
|...|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999888764
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=3.6e-12 Score=112.02 Aligned_cols=238 Identities=13% Similarity=0.071 Sum_probs=152.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhc------C
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSS-------SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR------N 144 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 144 (412)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|.+.+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999998873 33455678899999999999999999999988654 1
Q ss_pred -CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 040580 145 -ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR------GFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRS--- 213 (412)
Q Consensus 145 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 213 (412)
.+....++..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...++...+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223448888899999999999999999988764 2223 3456777888899999999999999888764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHhcC----------CCCc----chHHHHHHHHHHhcCCChHHHHH
Q 040580 214 ---RHLI-DKEGIRAVSFTYLKERKFFMLGEFLRDVGLG----------RKDL----GNLLWNLLLLSYAGNFKMKSLQR 275 (412)
Q Consensus 214 ---~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------~~~~----~~~~~~~li~~~~~~g~~~~a~~ 275 (412)
+..| ...++..+...|...|++++|.+.+++.... .... ....+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2122 2346667777777777777777777764221 0000 01111222222333344444444
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHH
Q 040580 276 EFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316 (412)
Q Consensus 276 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 316 (412)
.++...... +.+..++..+...|.+.|++++|...+++..
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444221 1224455566666666666666666666554
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=2.8e-11 Score=113.15 Aligned_cols=216 Identities=9% Similarity=-0.098 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 040580 60 PHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV-LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIID 138 (412)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 138 (412)
++++++.+++..... +.+...+..+...+...|++ ++|...|++..+.. +.+...|..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 567777777665542 34677778888888888888 88888888887764 4457788888888888888888888888
Q ss_pred HHhhcCCCCCHHhHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc--------CCHH
Q 040580 139 QVSCRNADLLPEVYSRAISCFGKQ---------GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF--------GSLT 201 (412)
Q Consensus 139 ~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~ 201 (412)
+..+.+ |++..+..+...+... |++++|+..|++..+.... +...+..+..++... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887643 5567777888888888 8888888888888775322 466777777777777 7888
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHH
Q 040580 202 EMETAYGRLKRSRHL--IDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMR 279 (412)
Q Consensus 202 ~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 279 (412)
+|...|+...+.... .+...+..+..+|...|++++|.+.|++.....++ +..++..+...+...|++++|+..+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888775311 36778888888888888888888888875443333 346788888888888888888876655
Q ss_pred HH
Q 040580 280 MS 281 (412)
Q Consensus 280 m~ 281 (412)
+.
T Consensus 318 ~~ 319 (474)
T 4abn_A 318 TK 319 (474)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=2.2e-11 Score=113.87 Aligned_cols=212 Identities=10% Similarity=-0.004 Sum_probs=170.3
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCH-HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 040580 95 VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF-NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLK 173 (412)
Q Consensus 95 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 173 (412)
++++...++...... +.+...+..+...+...|++ ++|.+.|++..+.+ +-++..|..+...|...|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566667777666543 45788999999999999999 99999999998765 4567799999999999999999999999
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------ccHH
Q 040580 174 EMVSRGFSVDSATGNAFIIYYSRF---------GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE--------RKFF 236 (412)
Q Consensus 174 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~ 236 (412)
+..+. .|+...+..+...+... |++++|...+++..+.. +.+...+..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99886 46778888888889898 99999999999988764 33678888888888888 8899
Q ss_pred HHHHHHHHHhcCCCC--cchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHccCChhHHHHHHH
Q 040580 237 MLGEFLRDVGLGRKD--LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD-LTTFNIRAVAFSRMSMFWDLHLSLE 313 (412)
Q Consensus 237 ~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 313 (412)
+|.+.+++.....+. .+...|..+..+|...|++++|...|++..+. .|+ ...+..+...+...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999888886543331 24588888888899999999999999888765 344 5567777788888888887776543
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=7.5e-11 Score=107.21 Aligned_cols=294 Identities=9% Similarity=-0.069 Sum_probs=195.6
Q ss_pred HhcCCChhHHHHHHHHHHhc--CCCCCH--HhHHHHHHHH--HhcCChHHHH-----------HHHHHHHhCCCCcC---
Q 040580 54 LGRKKKPHLAHQLVNTVKSE--GLLPDN--STLCALMLCY--ANNGFVLEAQ-----------VVWEELLSSSFVLS--- 113 (412)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~--g~~p~~--~~~~~ll~~~--~~~~~~~~a~-----------~~~~~m~~~~~~~~--- 113 (412)
+.+.+++++|..++++..+. .+..|. ..|-.++..- ...+..+.+. +.++.+.....+.+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 34578999999999988653 232343 3334443321 1223344444 66666654321111
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHhhcC--CCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CC
Q 040580 114 -VQVLSDLMDAYGRIGCFNEIISIIDQVSCRN--ADL---LPEVYSRAISCFGKQGQLELMENTLKEMVSR----GF-SV 182 (412)
Q Consensus 114 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p 182 (412)
...+......+...|++++|.+.|++..+.- .+. ...++..+...|...|++++|+..+.+..+. +- .|
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1122336677888999999999999986531 111 2248888999999999999999999987652 11 11
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcccHHHHHHHHHHHhc-----CCCC
Q 040580 183 -DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL-ID----KEGIRAVSFTYLKERKFFMLGEFLRDVGL-----GRKD 251 (412)
Q Consensus 183 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~ 251 (412)
...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|.+.+++... ....
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 2356778888999999999999999887653111 11 24677788888889999999988887533 2212
Q ss_pred cchHHHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCcHhHHHHHHHHHHccCC---hhHHHHHHHHHHhCCCCCC-
Q 040580 252 LGNLLWNLLLLSYAGNFKMKSLQREFMRMSEA----GFHPDLTTFNIRAVAFSRMSM---FWDLHLSLEHMKHESVGPD- 323 (412)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~g~~p~- 323 (412)
....++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..|+
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 23577888888999999999999988886642 111112335667777788888 66666666653 33333
Q ss_pred HhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 324 LVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 324 ~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
...+..+...|...|++++|.+.+++.
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 446667788888889998888888765
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=1.8e-09 Score=97.53 Aligned_cols=269 Identities=9% Similarity=-0.060 Sum_probs=181.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCHH----hHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-cCHHHHHH
Q 040580 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS----TLCALMLCYANNGFVLEAQVVWEELLSS----SFV-LSVQVLSD 119 (412)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ 119 (412)
.....+...|++++|...+++........+.. +++.+...+...|++++|...+++..+. |.. ....++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445567899999999999887653222222 4566667788889999999998887652 211 11244677
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhc----CCC--C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--ChHHHH
Q 040580 120 LMDAYGRIGCFNEIISIIDQVSCR----NAD--L-LPEVYSRAISCFGKQGQLELMENTLKEMVSRGFS--V--DSATGN 188 (412)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~~~~ 188 (412)
+...+...|++++|.+.+++.... +.. | ....+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 888888999999999998877543 211 1 1236666778888999999999999887653221 1 234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHhcccHHHHHHHHHHHhcCCCCc---chHHHHH
Q 040580 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLI-D-KEGIR----AVSFTYLKERKFFMLGEFLRDVGLGRKDL---GNLLWNL 259 (412)
Q Consensus 189 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 259 (412)
.+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.....+.. ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 77788888999999999998876532111 1 11111 23344678899999999988764433221 1235667
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHc----CCCCcH-hHHHHHHHHHHccCChhHHHHHHHHHHh
Q 040580 260 LLLSYAGNFKMKSLQREFMRMSEA----GFHPDL-TTFNIRAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 260 li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 778888899999999988887532 222222 2555667778888999999888887654
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=1.3e-10 Score=93.37 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=100.9
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 125 (412)
.|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34555556666667777777666665442 2355666666666666777777777766666553 445566666666666
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 040580 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMET 205 (412)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 205 (412)
..|++++|.+.++++.... +.++..+..+...+...|++++|...+++..+... .+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 6677777776666665543 34455666666666666666666666666655421 234555666666666666666666
Q ss_pred HHHHHHh
Q 040580 206 AYGRLKR 212 (412)
Q Consensus 206 ~~~~~~~ 212 (412)
.++...+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=4.3e-10 Score=101.95 Aligned_cols=289 Identities=11% Similarity=-0.028 Sum_probs=170.3
Q ss_pred cCCCChHHHHHHHHHhhcc--------ChhhHHHHHHHH--hcCCChhHHH---------HHHHHHHhcCCCCCH-H---
Q 040580 24 THPKNGDLARKIIRYRKQE--------GFVDCASLVEDL--GRKKKPHLAH---------QLVNTVKSEGLLPDN-S--- 80 (412)
Q Consensus 24 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~--~~~~~~~~a~---------~~~~~m~~~g~~p~~-~--- 80 (412)
.+.+++++|..+++++.+. +...|-.++..- ...+....+. +.++.+.....+.+. .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 5678899999888876542 222333333321 1112222222 556555432111111 1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC--C---CcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC---C--C-CH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSS--F---VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA---D--L-LP 149 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~--~-~~ 149 (412)
.+......+...|++++|...|++..+.. + +....++..+...|...|+++.|...+++..+... . + ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 12233445667888888888888887631 1 11346778888888888888888888887654211 1 1 12
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCH
Q 040580 150 EVYSRAISCFGKQGQLELMENTLKEMVSR----GFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKR-----SRHLIDK 219 (412)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 219 (412)
.+++.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...+++..+ .. +...
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHH
Confidence 36777888888888888888888876542 1111 124566777788888888888888887765 32 2225
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCC----CCcchHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCCCc-HhH
Q 040580 220 EGIRAVSFTYLKERKFFMLGEFLRDVGLGR----KDLGNLLWNLLLLSYAGNFK---MKSLQREFMRMSEAGFHPD-LTT 291 (412)
Q Consensus 220 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~ 291 (412)
.++..+...|.+.|++++|.+.+++..... .......++.+...|...++ +.+|+..+++ .+..|+ ...
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHH
Confidence 566677777777777777777776642211 11112345555556666666 5555555554 222222 234
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHH
Q 040580 292 FNIRAVAFSRMSMFWDLHLSLEHMK 316 (412)
Q Consensus 292 ~~~ll~~~~~~g~~~~a~~~~~~m~ 316 (412)
+..+...|...|++++|...|++..
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556666777777777777776654
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=3.7e-10 Score=90.73 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=99.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (412)
..+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.++++.+.. +.++..+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555666666777777777776666543 4456666667777777777777777777666543 34455666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHH
Q 040580 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 239 (412)
...|++++|.+.+++..+... .+...+..+...+...|++++|...++...+.. +.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------------------- 144 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEG-------------------- 144 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--------------------
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccch--------------------
Confidence 666777777776666655421 244555556666666666666666666655432 1123
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040580 240 EFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (412)
.++..+...+...|++++|...+++..+
T Consensus 145 ---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 145 ---------------KVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp ---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555566666666666666666666553
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=1.7e-09 Score=97.75 Aligned_cols=267 Identities=11% Similarity=-0.051 Sum_probs=186.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhcCC-CCCH----HhHH
Q 040580 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSV----QVLSDLMDAYGRIGCFNEIISIIDQVSCRNA-DLLP----EVYS 153 (412)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~ 153 (412)
......+...|++++|...+++........+. .+++.+...+...|++++|.+.+++...... ..++ .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33445567899999999999998875422222 2567778889999999999999998754321 1122 2456
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCC--CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHH
Q 040580 154 RAISCFGKQGQLELMENTLKEMVSR----GFS--VD-SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL----IDKEGI 222 (412)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ 222 (412)
.+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6778889999999999999987652 222 32 345666778889999999999999988754322 124567
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhcC--CCCcchHHHH-----HHHHHHhcCCChHHHHHHHHHHHHcCCCCc---HhHH
Q 040580 223 RAVSFTYLKERKFFMLGEFLRDVGLG--RKDLGNLLWN-----LLLLSYAGNFKMKSLQREFMRMSEAGFHPD---LTTF 292 (412)
Q Consensus 223 ~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~ 292 (412)
..+...+...|++++|...+++.... ..... ..+. ..+..+...|++++|...+++.......++ ...+
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77888889999999999999875321 11111 1222 233447789999999999988764321111 2245
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHh----CCCCCCH-hhHHHHHHHHHhccccchHHHHHHhc
Q 040580 293 NIRAVAFSRMSMFWDLHLSLEHMKH----ESVGPDL-VTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 293 ~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
..+...+...|++++|...+++... .|..++. ..+..+..++...|+.++|.+.+++.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6777888899999999999888754 3332233 35666677788889999998888776
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=2e-09 Score=97.61 Aligned_cols=299 Identities=10% Similarity=-0.077 Sum_probs=177.2
Q ss_pred HHHHHHH--hcCCChhHHHHHHHHHHhc--CCCCC--HHhHHHHHHHH--HhcCChHHHH---------HHHHHHHhCCC
Q 040580 48 ASLVEDL--GRKKKPHLAHQLVNTVKSE--GLLPD--NSTLCALMLCY--ANNGFVLEAQ---------VVWEELLSSSF 110 (412)
Q Consensus 48 ~~li~~~--~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~~--~~~~~~~~a~---------~~~~~m~~~~~ 110 (412)
+.+-..| ...+++++|..++++..+. .+..| ...|-.|+..- ...+....+. ..++.+.....
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 93 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK 93 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC
Confidence 3344444 6788899999999887652 22223 33334444321 1112222222 56666544221
Q ss_pred CcCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhcCC-CCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 040580 111 VLSV----QVLSDLMDAYGRIGCFNEIISIIDQVSCRNA-DLL----PEVYSRAISCFGKQGQLELMENTLKEMVSR--- 178 (412)
Q Consensus 111 ~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 178 (412)
+.+. ..+......+...|++++|...|++..+... .++ ..++..+...|...|+++.|+..+++..+.
T Consensus 94 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 173 (378)
T 3q15_A 94 KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN 173 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 1111 1233445566788999999999988765311 122 237778888888999999999888876542
Q ss_pred -CC-CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHhc---
Q 040580 179 -GF-SV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRS----RHLI-DKEGIRAVSFTYLKERKFFMLGEFLRDVGL--- 247 (412)
Q Consensus 179 -g~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--- 247 (412)
+- .+ ...++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|.+.+++...
T Consensus 174 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 11 11 2356777888888899999999888877653 1111 124566677777777888887777776433
Q ss_pred --CCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCC---CCc-HhHHHHHHHHHHccCC---hhHHHHHHHHHHhC
Q 040580 248 --GRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF---HPD-LTTFNIRAVAFSRMSM---FWDLHLSLEHMKHE 318 (412)
Q Consensus 248 --~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~ 318 (412)
..+.. ..++..+...|.+.|++++|...+++..+..- .|. ...+..+-..+...++ +.+|..++++ .
T Consensus 254 ~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~ 329 (378)
T 3q15_A 254 EKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---K 329 (378)
T ss_dssp HHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---T
T ss_pred hhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---C
Confidence 22222 46677777777777777777777777664311 111 2344445555556666 5555555554 2
Q ss_pred CCCCC-HhhHHHHHHHHHhccccchHHHHHHhc
Q 040580 319 SVGPD-LVTYGCVVDAYLDKRLGRNLDFGLSKM 350 (412)
Q Consensus 319 g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 350 (412)
+..|+ ...+..+...|...|++++|.+.+++.
T Consensus 330 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 330 NLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 22222 334555666677777777777776654
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=4.6e-10 Score=109.37 Aligned_cols=165 Identities=10% Similarity=-0.005 Sum_probs=132.7
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
+..+|+.+...+.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..|++.++.. +-+...|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45678888888888888888888888888753 2257788888888888888888888888888765 456788888888
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHH
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLT 201 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 201 (412)
++.+.|++++|.+.|++..+.+ +-++..|+.+...+.+.|++++|++.|++..+. .| +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 8888889988888888887765 455678888888888888999998888888775 34 4567888888888888888
Q ss_pred HHHHHHHHHHh
Q 040580 202 EMETAYGRLKR 212 (412)
Q Consensus 202 ~a~~~~~~~~~ 212 (412)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=3.4e-09 Score=88.57 Aligned_cols=196 Identities=12% Similarity=0.011 Sum_probs=145.7
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
|+..+......+...|++++|++.|++..+...+++...+..+..++...|++++|...|+...+.. +.+..+|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5567777888888999999999999999887544788888778889999999999999999998865 446788999999
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCH-------HhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHH
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLP-------EVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD---SATGNAFII 192 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~ 192 (412)
++.+.|++++|.+.|++..+.. +.++ ..|..+-..+...|++++|+..|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999988765 4455 45777778888899999999999998875 455 345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCC
Q 040580 193 YYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250 (412)
Q Consensus 193 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 250 (412)
++...| ..+++.+...+ ..+...|.... ....+.+++|...+++.....+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 665443 34445555443 22344444333 2345678889988887644433
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=3.8e-10 Score=97.37 Aligned_cols=202 Identities=16% Similarity=0.092 Sum_probs=90.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcC-------C
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSS------S-FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN-------A 145 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~ 145 (412)
.++..+...+...|++++|...++...+. + .+....++..+...|...|++++|.+.|++..... .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555554432 1 11223445555555555555555555555443320 0
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 040580 146 DLLPEVYSRAISCFGKQGQLELMENTLKEMVSR------GFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRS----- 213 (412)
Q Consensus 146 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----- 213 (412)
+....++..+...+...|++++|...+++..+. +-.| ...++..+...+...|++++|...+++..+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 111224455555555555555555555554432 1112 1234445555555555555555555554432
Q ss_pred --CCCCC-HHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 040580 214 --RHLID-KEGIRAVSFTYLKE------RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSE 282 (412)
Q Consensus 214 --~~~~~-~~~~~~li~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 282 (412)
...+. ...+..+...+... ..+.++...++...... .....++..+...|...|++++|...|++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS-PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01111 11111111111111 11222322332222111 11346777888888888888888888887664
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=1.1e-09 Score=106.88 Aligned_cols=163 Identities=10% Similarity=0.046 Sum_probs=142.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (412)
+..+|+.|...+.+.|++++|+..|++.++.. +-+..+|+.|..+|.+.|++++|++.|++..+.+ +-++.+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 36789999999999999999999999999875 5568899999999999999999999999998765 456779999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHH
Q 040580 158 CFGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF 236 (412)
Q Consensus 158 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 236 (412)
.+.+.|++++|++.|++..+. .| +...+..+..++.+.|++++|...|++..+.. +-+...+..+...|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998875 34 56788999999999999999999999988764 235788899999999999998
Q ss_pred HHHHHHHHH
Q 040580 237 MLGEFLRDV 245 (412)
Q Consensus 237 ~a~~~~~~~ 245 (412)
+|.+.+++.
T Consensus 163 ~A~~~~~ka 171 (723)
T 4gyw_A 163 DYDERMKKL 171 (723)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877764
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=4.9e-10 Score=96.66 Aligned_cols=222 Identities=16% Similarity=0.054 Sum_probs=153.7
Q ss_pred cCCCChHHHHHHHHHhhc-------c----ChhhHHHHHHHHhcCCChhHHHHHHHHHHhc------CCCC-CHHhHHHH
Q 040580 24 THPKNGDLARKIIRYRKQ-------E----GFVDCASLVEDLGRKKKPHLAHQLVNTVKSE------GLLP-DNSTLCAL 85 (412)
Q Consensus 24 ~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~l 85 (412)
...|++++|...+++..+ + ...++..+...+...|++++|...|++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666665432 2 3567889999999999999999999998764 2222 35678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------C-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhc------C-CCCCHHh
Q 040580 86 MLCYANNGFVLEAQVVWEELLSS------S-FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR------N-ADLLPEV 151 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~ 151 (412)
...+...|++++|...+++..+. . .+....++..+...+...|++++|.+.|++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1345678999999999999999999999988764 1 1122347
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCChH-HHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCC
Q 040580 152 YSRAISCFGKQGQLELMENTLKEMVSR-------GFSVDSA-TGNAFIIYYSRFGSLT------EMETAYGRLKRSRHLI 217 (412)
Q Consensus 152 ~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~-~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~ 217 (412)
+..+...+...|++++|...+++..+. ...+... .+..+.......+... .+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999988753 1233332 3333333333322222 22222211111 1112
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHh
Q 040580 218 DKEGIRAVSFTYLKERKFFMLGEFLRDVG 246 (412)
Q Consensus 218 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 246 (412)
...++..+...|...|++++|.+.+++..
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35578888999999999999999998753
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=7.5e-09 Score=86.48 Aligned_cols=205 Identities=11% Similarity=-0.008 Sum_probs=154.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 040580 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156 (412)
Q Consensus 77 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (412)
.|+..+......+...|++++|...|+...+...+++...+..+..++.+.|++++|.+.|++..+.+ +-++.+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788888999999999999999999999987633788888889999999999999999999998755 44566899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 040580 157 SCFGKQGQLELMENTLKEMVSRGFSVDS-------ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID---KEGIRAVS 226 (412)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li 226 (412)
..+...|++++|+..+++..+.... +. ..|..+...+...|++++|...|+...+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999885322 33 45777778888999999999999999876 354 56677777
Q ss_pred HHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHH
Q 040580 227 FTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIR 295 (412)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 295 (412)
..|...|+. .++++...... +...|.... ....+.+++|+..|++..+. .|+......+
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~ 219 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQM 219 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 777665543 22332222111 123444333 23346789999999999876 5664443333
No 85
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.18 E-value=8.1e-08 Score=92.64 Aligned_cols=391 Identities=9% Similarity=-0.049 Sum_probs=205.9
Q ss_pred hccccccccccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCC---hhHHHHHHHHHHhcC-CCCCHHhHHHHH
Q 040580 14 FKRFNVPSHQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKK---PHLAHQLVNTVKSEG-LLPDNSTLCALM 86 (412)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g-~~p~~~~~~~ll 86 (412)
..|..++..+.+.+.++.++.+++++... ....|...+..-.+.+. ++.+..+|++..... ..|+...|..-+
T Consensus 67 ~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl 146 (679)
T 4e6h_A 67 FLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYI 146 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 44667777777778888888888887653 55567777777777787 888888998887753 147888877766
Q ss_pred HHHHhcCCh--------HHHHHHHHHHHh-CCC-Cc-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHhhcCCC
Q 040580 87 LCYANNGFV--------LEAQVVWEELLS-SSF-VL-SVQVLSDLMDAYGR---------IGCFNEIISIIDQVSCRNAD 146 (412)
Q Consensus 87 ~~~~~~~~~--------~~a~~~~~~m~~-~~~-~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~ 146 (412)
.-..+.++. +.+.++|+..+. .|. .| +...|...+..... .++++.+.++|++.......
T Consensus 147 ~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~ 226 (679)
T 4e6h_A 147 TYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMD 226 (679)
T ss_dssp HHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccH
Confidence 655554443 334577777654 455 44 45678777766542 34567788888887642111
Q ss_pred CCHHhHH---HHHHHHH----------hcCChHHHHHHHHHHHH--CCCC---CC--------------------hHHHH
Q 040580 147 LLPEVYS---RAISCFG----------KQGQLELMENTLKEMVS--RGFS---VD--------------------SATGN 188 (412)
Q Consensus 147 ~~~~~~~---~li~~~~----------~~g~~~~a~~~~~~m~~--~g~~---p~--------------------~~~~~ 188 (412)
.-..+|. .+-.... ...+++.|...+.++.. .++. |. ...|.
T Consensus 227 ~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~ 306 (679)
T 4e6h_A 227 CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWL 306 (679)
T ss_dssp SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHH
Confidence 1112332 2221110 01123334444444321 1110 10 02233
Q ss_pred HHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHH-HHHHHHhcCCCCcchHHHHHH
Q 040580 189 AFIIYYSRFG-------SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG-EFLRDVGLGRKDLGNLLWNLL 260 (412)
Q Consensus 189 ~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l 260 (412)
..+.---..+ ..+.+..+|++....- +-....|...+..+...|+.++|. +++++.....+. +...|-..
T Consensus 307 ~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~-s~~Lwl~~ 384 (679)
T 4e6h_A 307 EWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN-SAVLAFSL 384 (679)
T ss_dssp HHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3332211111 1233445666665532 335666666666666666666664 666654322221 23455566
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcC---------CCCc------------HhHHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 040580 261 LLSYAGNFKMKSLQREFMRMSEAG---------FHPD------------LTTFNIRAVAFSRMSMFWDLHLSLEHMKHES 319 (412)
Q Consensus 261 i~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 319 (412)
+...-+.|++++|..+|+++.+.. -.|+ ...|...+....+.|..+.|..+|.+..+.-
T Consensus 385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~ 464 (679)
T 4e6h_A 385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK 464 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 666666677777777777665421 0131 2245556666666666777777777666541
Q ss_pred CCCCHhhHHHHHHHHHhc-cccchHHHHHHhc-cCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc--C----chHH
Q 040580 320 VGPDLVTYGCVVDAYLDK-RLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR--Q----RKWT 390 (412)
Q Consensus 320 ~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~--~----~~~~ 390 (412)
..+....|......-.+. ++.+.|.++|+.. +. ..-+...+...+..... |+...|..+|++... + ....
T Consensus 465 ~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~l 543 (679)
T 4e6h_A 465 KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMI 543 (679)
T ss_dssp GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 111222232222222222 3466677776665 22 11122223334444433 666667666666443 2 2345
Q ss_pred HHHHHHHHHHcCccccc
Q 040580 391 YRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 391 ~~~l~~~~~~~g~~~~a 407 (412)
|..+++--.+.|+.+.+
T Consensus 544 w~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 544 FQKVIFFESKVGSLNSV 560 (679)
T ss_dssp HHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHHHHcCCHHHH
Confidence 66666655566655443
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=2.3e-09 Score=80.98 Aligned_cols=129 Identities=15% Similarity=0.085 Sum_probs=76.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 125 (412)
+|..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|...++.+.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555556666666666666666665543 2345555566666666666666666666665543 344555666666666
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
..|++++|.+.++++.... +.++.++..+...+.+.|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666665443 33444555566666666666666666665554
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=4.6e-09 Score=91.49 Aligned_cols=141 Identities=8% Similarity=-0.121 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHccCCHHHH
Q 040580 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS----SFVLS-VQVLSDLMDAYGRIGCFNEI 133 (412)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~~~~~a 133 (412)
++++|...|++. ...+...|++++|...|++..+. |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366677666665 23456677777777777766542 22222 45677777777777777777
Q ss_pred HHHHHHHhhcCCC-CC----HHhHHHHHHHHHhc-CChHHHHHHHHHHHHCCC----CCC-hHHHHHHHHHHHhcCCHHH
Q 040580 134 ISIIDQVSCRNAD-LL----PEVYSRAISCFGKQ-GQLELMENTLKEMVSRGF----SVD-SATGNAFIIYYSRFGSLTE 202 (412)
Q Consensus 134 ~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~----~p~-~~~~~~li~~~~~~g~~~~ 202 (412)
...|++..+.... .+ ..+++.+...|... |++++|+..|++..+... .+. ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777765432100 01 22566666666664 777777777766544210 000 2345556666666666666
Q ss_pred HHHHHHHHHhCC
Q 040580 203 METAYGRLKRSR 214 (412)
Q Consensus 203 a~~~~~~~~~~~ 214 (412)
|...|+...+..
T Consensus 177 A~~~~~~al~~~ 188 (292)
T 1qqe_A 177 ASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 88
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.14 E-value=3.6e-07 Score=88.19 Aligned_cols=362 Identities=6% Similarity=-0.064 Sum_probs=238.4
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC---hHHHHHHHHHHHhCC-CCcCHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF---VLEAQVVWEELLSSS-FVLSVQVLS 118 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~-~~~~~~~~~ 118 (412)
|..+|..++..+.+.+.++.+..+|+.+... .+.+...|..-+..-.+.++ ++.+..+|++.+... .+|++..|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 8889999999999999999999999999986 46677888888888888888 999999999999864 248999999
Q ss_pred HHHHHHHccCCH--------HHHHHHHHHHhhc-CC-CC-CHHhHHHHHHHHH---------hcCChHHHHHHHHHHHHC
Q 040580 119 DLMDAYGRIGCF--------NEIISIIDQVSCR-NA-DL-LPEVYSRAISCFG---------KQGQLELMENTLKEMVSR 178 (412)
Q Consensus 119 ~li~~~~~~~~~--------~~a~~~~~~m~~~-~~-~~-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~ 178 (412)
..+....+.++. +.+.++|+..... |. .+ +...|...+.-.. ..++++.+..+|++....
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 988877766654 3355778776542 43 33 3457877776543 344578889999998863
Q ss_pred CCCCChHHHH---HHHHHHH----------hcCCHHHHHHHHHHHHhC--CCC---------------C-----C---HH
Q 040580 179 GFSVDSATGN---AFIIYYS----------RFGSLTEMETAYGRLKRS--RHL---------------I-----D---KE 220 (412)
Q Consensus 179 g~~p~~~~~~---~li~~~~----------~~g~~~~a~~~~~~~~~~--~~~---------------~-----~---~~ 220 (412)
....-..+|. .+..... ...+++.|...+.++... ++. | + ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 2111123332 2222210 011234455555543321 111 1 0 13
Q ss_pred HHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCCCcHhHH
Q 040580 221 GIRAVSFTYLKER-------KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQ-REFMRMSEAGFHPDLTTF 292 (412)
Q Consensus 221 ~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~~ 292 (412)
.|...+.---..+ ..+.+..++++.-...+. +...|-....-+...|+.++|. .+|++.... ++.+...+
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 4444444333222 133455667765333332 3488888888888889999997 999999864 23445556
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCC---------CCCC------------HhhHHHHHHHHHhccccchHHHHHHhc-
Q 040580 293 NIRAVAFSRMSMFWDLHLSLEHMKHES---------VGPD------------LVTYGCVVDAYLDKRLGRNLDFGLSKM- 350 (412)
Q Consensus 293 ~~ll~~~~~~g~~~~a~~~~~~m~~~g---------~~p~------------~~~~~~li~~~~~~~~~~~a~~~~~~m- 350 (412)
-..+....+.|++++|..+|+.+.+.. -.|+ ...|...++...+.|..+.|.++|...
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 678888889999999999999987631 0142 346888888888899999999999998
Q ss_pred cC-C-CCCCcccHHHHHHHHhcCCcccHHHHHHHhcc---CchHHHHHHHHHHHHcCccccc
Q 040580 351 NL-D-DSPVVSTDPYVFEAFGKGDFHSSSEAFLEFKR---QRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 351 ~~-~-~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 407 (412)
+. . ..+......+.+.....++.+.|.++|+.... .++..|...++-....|+.+.|
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 33 1 11222222222222223558899999887544 6777888888877778877766
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=6e-09 Score=78.62 Aligned_cols=130 Identities=16% Similarity=0.109 Sum_probs=96.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (412)
.|..+...+...|++++|..+++.+.+.+ +.+..++..+...+...|++++|.+.|+++...+ +.++..+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45667777778888888888888887754 4567777778888888888888888888877654 445667777777888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040580 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
..|++++|...++++.+... .+...+..+...+.+.|++++|...++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888776532 24566667777777888888888887776653
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=6.3e-08 Score=83.29 Aligned_cols=143 Identities=13% Similarity=-0.013 Sum_probs=79.7
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA-DLLPEVYSRAISCFGKQGQLELMENTLKEMV 176 (412)
Q Consensus 98 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 176 (412)
+...+++..+.+ +++..++..+..++...|++++|++++++....+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566655544 44455555666667777777777777776644331 1233466666677777777777777777776
Q ss_pred HCCCCC-----ChHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 040580 177 SRGFSV-----DSATGNAFIIYYS--RFG--SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245 (412)
Q Consensus 177 ~~g~~p-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 245 (412)
+. .| +..+...+..++. ..| +...|..+|+++.+.. |+..+...++.++...|++++|++.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 53 34 2344444444422 222 6667777777765432 33223333333555566666666665543
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=1.5e-08 Score=88.17 Aligned_cols=175 Identities=9% Similarity=-0.015 Sum_probs=134.9
Q ss_pred ChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhc----CCCCC-HHhHHHHHHHHHhcCChHHHHHHH
Q 040580 28 NGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSE----GLLPD-NSTLCALMLCYANNGFVLEAQVVW 102 (412)
Q Consensus 28 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 102 (412)
++++|...+++. ...+...|++++|.+.|++.... |-+++ ..+|+.+..+|.+.|++++|...|
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777777664 55678899999999999887653 32222 568899999999999999999999
Q ss_pred HHHHhC----CCCc-CHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhcCCCC-C----HHhHHHHHHHHHhcCChHHHHHH
Q 040580 103 EELLSS----SFVL-SVQVLSDLMDAYGRI-GCFNEIISIIDQVSCRNADL-L----PEVYSRAISCFGKQGQLELMENT 171 (412)
Q Consensus 103 ~~m~~~----~~~~-~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~ 171 (412)
+...+. |-.+ -..+++.+...|... |++++|.+.|++..+..... + ..+++.+...+.+.|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988763 2111 146889999999996 99999999999886532111 1 34788899999999999999999
Q ss_pred HHHHHHCCCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040580 172 LKEMVSRGFSVDS------ATGNAFIIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 172 ~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
|++..+....... ..+..+..++...|++++|...|++..+.
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999886433222 14667778888999999999999987753
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=7.1e-09 Score=80.48 Aligned_cols=142 Identities=10% Similarity=0.001 Sum_probs=91.3
Q ss_pred ccccccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh
Q 040580 19 VPSHQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFV 95 (412)
Q Consensus 19 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 95 (412)
|...+...|++++|+..++...+. +...+-.+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 445566677777777777766543 34455667777777777777777777777653 23566777777777777777
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHH-HHHHhhcCCCCCHHhHHHHHHHHHhcC
Q 040580 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI-IDQVSCRNADLLPEVYSRAISCFGKQG 163 (412)
Q Consensus 96 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~~li~~~~~~g 163 (412)
++|...|+...+.. +-+..+|..+...|.+.|+.++|.+. +++..+.. +-++.+|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 77777777777654 44566777777777777777665544 46655544 445556666555555554
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=4.1e-08 Score=83.86 Aligned_cols=101 Identities=14% Similarity=-0.005 Sum_probs=65.9
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CcCHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD---NSTLCALMLCYANNGFVLEAQVVWEELLSSSF--VLSVQVL 117 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~ 117 (412)
+...+......+.+.|++++|+..|+++.+.. +-+ ...+..+..++.+.|++++|...|+...+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45555566666677777777777777777652 112 45666677777777777777777777776421 1224556
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHHhhcC
Q 040580 118 SDLMDAYGR--------IGCFNEIISIIDQVSCRN 144 (412)
Q Consensus 118 ~~li~~~~~--------~~~~~~a~~~~~~m~~~~ 144 (412)
..+..++.+ .|++++|...|++..+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 666667766 777777777777776543
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=3.3e-08 Score=84.45 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=80.6
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC--CCCHHh
Q 040580 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS---VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA--DLLPEV 151 (412)
Q Consensus 77 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~ 151 (412)
.+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|...|++..+... +..+.+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677777888889999999999999998864 333 67888899999999999999999999877531 122446
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHC
Q 040580 152 YSRAISCFGK--------QGQLELMENTLKEMVSR 178 (412)
Q Consensus 152 ~~~li~~~~~--------~g~~~~a~~~~~~m~~~ 178 (412)
+..+..++.. .|++++|+..|++..+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 7777788888 89999999999998875
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=3.9e-08 Score=84.61 Aligned_cols=182 Identities=8% Similarity=-0.096 Sum_probs=128.9
Q ss_pred HHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 63 AHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSF-VLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 63 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
|+..|++....+ .++..++..+..++...|++++|++++...+..|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666777776655 56777777888999999999999999999877663 2467889999999999999999999999997
Q ss_pred hcCCCC-----CHHhHHHHHHHHH--h--cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040580 142 CRNADL-----LPEVYSRAISCFG--K--QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 142 ~~~~~~-----~~~~~~~li~~~~--~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 212 (412)
+. .| +..+...+..++. . .+++..|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 34 2345555655532 3 34899999999999775 35534444556689999999999999997765
Q ss_pred CC---------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCC
Q 040580 213 SR---------HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD 251 (412)
Q Consensus 213 ~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 251 (412)
.- -+-++.+...+|......|+ +|.++++++....++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 31 02244444344433333444 555555555444443
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=4.8e-08 Score=80.38 Aligned_cols=161 Identities=11% Similarity=-0.026 Sum_probs=93.7
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCC-HHhHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 040580 52 EDLGRKKKPHLAHQLVNTVKSEGLLPD-NSTLCA----------------LMLCYANNGFVLEAQVVWEELLSSSFVLSV 114 (412)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 114 (412)
..+...|++++|+..|++..+. .|+ ...|.. +..++.+.|++++|...|+..++.. +-+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 3445566666666666666654 232 333444 6667777777777777777777654 4466
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 040580 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ--LELMENTLKEMVSRGFSVDSATGNAFII 192 (412)
Q Consensus 115 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~ 192 (412)
..+..+..++...|++++|.+.|++..+.+ +-++.+|..+...|...|+ ...+...++.... ..|....+.....
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~ 165 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHH
Confidence 777777777777777777777777776654 4455667666666654443 2333444443321 1222222223344
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 040580 193 YYSRFGSLTEMETAYGRLKRSRHLIDKE 220 (412)
Q Consensus 193 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 220 (412)
++...|++++|...|++..+. .|+..
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 455567777777777776654 35543
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=8.2e-08 Score=78.95 Aligned_cols=183 Identities=8% Similarity=-0.013 Sum_probs=82.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (412)
.+......+...|++++|...|+...+.. +-+...|... .. .......+...+.+...+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~--------------~~~~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NV--------------DKNSEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HS--------------CTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hh--------------cchhhhhHHHHHHHHHHHH
Confidence 33344445566677777777777766643 2223333330 00 0000011112223555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc--HHHH
Q 040580 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK--FFML 238 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a 238 (412)
+.|++++|+..|++..+.... +...+..+..++...|++++|...|+...+.. +.+...+..+...|...|. ...+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 666666666666655553211 34455555555666666666666666655543 1234444444444433322 2223
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH
Q 040580 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDL 289 (412)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 289 (412)
...+.... .+.+....+.....++...|++++|...|++..+. .|+.
T Consensus 144 ~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~ 190 (208)
T 3urz_A 144 ETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPST 190 (208)
T ss_dssp HHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCH
T ss_pred HHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCH
Confidence 33333221 11111122333334444455666666666655533 4543
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=4.7e-08 Score=84.83 Aligned_cols=177 Identities=11% Similarity=-0.012 Sum_probs=92.1
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040580 30 DLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109 (412)
Q Consensus 30 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 109 (412)
+.....++.....+...+..+...+...|++++|...|++..+.. +-+...+..+...+.+.|++++|...++.+....
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 334444444443344445555555556666666666666655542 2244555556666666666666666666555432
Q ss_pred CCcCHHHHHH-HHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHH
Q 040580 110 FVLSVQVLSD-LMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV-DSATG 187 (412)
Q Consensus 110 ~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~ 187 (412)
|+...... ....+.+.++.+.|.+.+++..... +.++..+..+...+...|++++|+..|.+..+..... +...+
T Consensus 182 --p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 182 --QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 33322221 2222444455555556665555543 3445556666666666666666666666665542211 13445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 040580 188 NAFIIYYSRFGSLTEMETAYGRL 210 (412)
Q Consensus 188 ~~li~~~~~~g~~~~a~~~~~~~ 210 (412)
..+...+...|+.++|...++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHH
Confidence 55555666666665555555443
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=2e-08 Score=98.06 Aligned_cols=170 Identities=8% Similarity=-0.091 Sum_probs=123.3
Q ss_pred hcCCChhHHHHHHHHHH--------hcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 040580 55 GRKKKPHLAHQLVNTVK--------SEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR 126 (412)
Q Consensus 55 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 126 (412)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|...|++..+.+ +.+...|..+..++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888877 321 3355677777788888888888888888887764 4567788888888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 040580 127 IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETA 206 (412)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 206 (412)
.|++++|.+.|++..+.+ +-++..|..+...+.+.|++++ +..|++..+.... +...+..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888887665 4456678888888888888888 8888887765322 456677777888888888888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHh
Q 040580 207 YGRLKRSRHLID-KEGIRAVSFTYLK 231 (412)
Q Consensus 207 ~~~~~~~~~~~~-~~~~~~li~~~~~ 231 (412)
|++..+.. |+ ...+..+..++..
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC-
T ss_pred HHhhcccC--cccHHHHHHHHHHHHc
Confidence 87776543 43 4455555555544
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=3.3e-08 Score=86.75 Aligned_cols=165 Identities=9% Similarity=-0.027 Sum_probs=95.6
Q ss_pred CCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 26 PKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105 (412)
Q Consensus 26 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 105 (412)
.|++++|..++++..+....++ +...++++.|...|++. ...|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSF------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCS------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccc------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHH
Confidence 4566777777776554321110 11146666666666554 34566677777777777766
Q ss_pred HhC----CCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcC--C-CCC--HHhHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 106 LSS----SFVL-SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN--A-DLL--PEVYSRAISCFGKQGQLELMENTLKEM 175 (412)
Q Consensus 106 ~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~-~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 175 (412)
.+. +-++ -..+|+.+...|.+.|++++|...|++..+.. . .+. ..+++.+...|.. |++++|+..|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 542 1111 13467777777777777777777777654321 0 111 2356666666666 7777777777765
Q ss_pred HHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040580 176 VSR----GFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 176 ~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 212 (412)
.+. |-.+ ...++..+...+.+.|++++|...|++..+
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 442 1100 124566666677777777777777766654
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=3.4e-08 Score=96.49 Aligned_cols=174 Identities=9% Similarity=-0.103 Sum_probs=117.2
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 040580 90 ANNGFVLEAQVVWEELL--------SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161 (412)
Q Consensus 90 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 161 (412)
...|++++|.+.+++.. +.. +.+...+..+..++.+.|++++|.+.|++..+.+ +-++..|..+...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56778888888888777 332 4456777777888888888888888888777654 4556677777778888
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHH
Q 040580 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEF 241 (412)
Q Consensus 162 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 241 (412)
.|++++|+..|++..+.... +...+..+..++.+.|++++ ...|++..+.. +.+...+..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887764321 45666777777778888887 77777777654 23556667777777777777777777
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 040580 242 LRDVGLGRKDLGNLLWNLLLLSYAGNFK 269 (412)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~~~~~g~ 269 (412)
+++.....++ +..++..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 7765433332 23556666666655443
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=3.1e-08 Score=79.11 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=63.2
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHccCC
Q 040580 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA-YGRIGC 129 (412)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~ 129 (412)
...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++...+.. |+...+..+... +...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcc
Confidence 334444445555555544443321 1133444444444444555555555444444322 122222111111 111111
Q ss_pred HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 040580 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEMETAYG 208 (412)
Q Consensus 130 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 208 (412)
...|.+.|++..+.+ +-++..+..+...+...|++++|...|++..+....+ +...+..+...+...|+.++|...|+
T Consensus 90 ~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred cchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 222344444444332 2234444444445555555555555555544432221 12344444444455555555544444
Q ss_pred H
Q 040580 209 R 209 (412)
Q Consensus 209 ~ 209 (412)
.
T Consensus 169 ~ 169 (176)
T 2r5s_A 169 R 169 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=2.2e-07 Score=76.64 Aligned_cols=175 Identities=7% Similarity=-0.089 Sum_probs=120.7
Q ss_pred HHHHHHHHhhc-cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC----ChHHHHHHHHHH
Q 040580 31 LARKIIRYRKQ-EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG----FVLEAQVVWEEL 105 (412)
Q Consensus 31 ~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~m 105 (412)
+|.+.|++..+ .+..++..+-..+...+++++|++.|++..+.| ++..+..|...|.. + ++++|...|+..
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 45556655444 367777777777777888888888888887765 56667777777766 5 788888888888
Q ss_pred HhCCCCcCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCC-CCHHhHHHHHHHHHh----cCChHHHHHHHHHHH
Q 040580 106 LSSSFVLSVQVLSDLMDAYGR----IGCFNEIISIIDQVSCRNAD-LLPEVYSRAISCFGK----QGQLELMENTLKEMV 176 (412)
Q Consensus 106 ~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~ 176 (412)
.+.| +...+..|...|.. .+++++|.+.|++..+.+.. ..+..+..|-..|.. .+++++|+..|++..
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 7654 55667777777776 77888888888887665421 125677777777776 677888888888877
Q ss_pred HCCCCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 040580 177 SRGFSVDSATGNAFIIYYSRF-G-----SLTEMETAYGRLKRSR 214 (412)
Q Consensus 177 ~~g~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 214 (412)
+.+ ++...+..|-..|... | +.++|...|+...+.|
T Consensus 157 ~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 651 2334455555555442 2 7788888887777666
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.87 E-value=2e-08 Score=80.18 Aligned_cols=159 Identities=15% Similarity=0.070 Sum_probs=124.1
Q ss_pred cccccccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHH-HHh
Q 040580 16 RFNVPSHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC-YAN 91 (412)
Q Consensus 16 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 91 (412)
.......+.+.|++++|...+++..+ .+...+..+...+...|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44555667889999999999998764 377889999999999999999999999987653 455444332222 223
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-CHHhHHHHHHHHHhcCChHHHHH
Q 040580 92 NGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL-LPEVYSRAISCFGKQGQLELMEN 170 (412)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~ 170 (412)
.+....+...++...+.. +.+...+..+..++...|++++|.+.|+++.+.+..+ ++..+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 333445788899888864 5568999999999999999999999999998765322 35589999999999999999999
Q ss_pred HHHHHHH
Q 040580 171 TLKEMVS 177 (412)
Q Consensus 171 ~~~~m~~ 177 (412)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.87 E-value=1.8e-08 Score=78.20 Aligned_cols=142 Identities=7% Similarity=-0.150 Sum_probs=96.6
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCH
Q 040580 52 EDLGRKKKPHLAHQLVNTVKSEGLLP-DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130 (412)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 130 (412)
..+...|++++|+..+...... .| +...+..+...|.+.|++++|.+.|+..++.. +-+..+|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3445567778888877776543 23 23455667777888888888888888887765 55677888888888888888
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCC-ChHHHHHHHHHHHhcCC
Q 040580 131 NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENT-LKEMVSRGFSV-DSATGNAFIIYYSRFGS 199 (412)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 199 (412)
++|...|++..+.+ +-++.+|..+...+.+.|+++++... +++..+. .| +...|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 88888888877655 44566788888888888887765554 4666553 34 44556555555555553
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=2.8e-07 Score=76.70 Aligned_cols=186 Identities=8% Similarity=-0.025 Sum_probs=94.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCC-CC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cCH-HHHHHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLL-PD-NSTLCALMLCYANNGFVLEAQVVWEELLSSSFV-LSV-QVLSDLM 121 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~~li 121 (412)
.+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...|+.+.+.... +.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3444555666677777777777777664211 11 345666667777777777777777777664311 111 2333344
Q ss_pred HHHHc------------------cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040580 122 DAYGR------------------IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183 (412)
Q Consensus 122 ~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 183 (412)
.++.+ .|+.++|...|+++.+.. +-++..+......- .+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~------- 147 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA------- 147 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH-------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH-------
Confidence 44332 455666666666665432 22222222110000 0000000
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCC
Q 040580 184 SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLI--DKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250 (412)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 250 (412)
...-.+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|+.++|.+.++.+....+
T Consensus 148 -~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 -KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 001223445566666666666666666543111 123455666666666666666666666544443
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=9.7e-08 Score=91.40 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=110.4
Q ss_pred CCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 040580 26 PKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVW 102 (412)
Q Consensus 26 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 102 (412)
.|++++|...+++..+ .+...|..+...+...|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4678888888887654 256778888888888899999999998888753 335778888888888899999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc---CChHHHHHHHHHHHHCC
Q 040580 103 EELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ---GQLELMENTLKEMVSRG 179 (412)
Q Consensus 103 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g 179 (412)
++..+.. +.+...+..+..++.+.|++++|.+.|++..+.+ +.++..+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8888765 5567888888888889999999999998887765 45567888888888888 88889998888887764
Q ss_pred C
Q 040580 180 F 180 (412)
Q Consensus 180 ~ 180 (412)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 3
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=9.6e-08 Score=91.46 Aligned_cols=154 Identities=9% Similarity=-0.051 Sum_probs=107.9
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHH
Q 040580 57 KKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136 (412)
Q Consensus 57 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 136 (412)
.|++++|.+.|++..+.. +-+...+..+...+.+.|++++|...|++..+.. +.+...+..+..+|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888877653 2357778888888888888888888888888765 45678888888888888888888888
Q ss_pred HHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 040580 137 IDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF---GSLTEMETAYGRLKRS 213 (412)
Q Consensus 137 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 213 (412)
|++..+.+ +.++..+..+...+.+.|++++|.+.|++..+... .+...+..+...+... |+.++|...+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88887765 45567888888888888888888888888877532 2456777788888888 8888888888888776
Q ss_pred C
Q 040580 214 R 214 (412)
Q Consensus 214 ~ 214 (412)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=2.3e-07 Score=76.34 Aligned_cols=128 Identities=13% Similarity=-0.034 Sum_probs=100.6
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 125 (412)
.+..+...+...|++++|+..|++.. .|+...+..+...+.+.|++++|...|+...+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667778888888888887663 5678888888888888889999888888888765 556788888888888
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCC----------------HHhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 040580 126 RIGCFNEIISIIDQVSCRNADLL----------------PEVYSRAISCFGKQGQLELMENTLKEMVSRG 179 (412)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 179 (412)
+.|++++|.+.|++..+.. +.+ +..+..+...+.+.|++++|...|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8899999988888887643 222 2577788888888889999988888888753
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=1.2e-07 Score=82.27 Aligned_cols=162 Identities=8% Similarity=-0.093 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH-HHHH
Q 040580 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNA-FIIY 193 (412)
Q Consensus 115 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~ 193 (412)
..+..+...+.+.|++++|.+.|++..+.. +-++..+..+...+.+.|++++|...+++.... .|+...... ....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 334444444444444444444444444333 233334444444444444444444444444332 122211111 1112
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHhcCCChHH
Q 040580 194 YSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKD-LGNLLWNLLLLSYAGNFKMKS 272 (412)
Q Consensus 194 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 272 (412)
+.+.++.+.|...++...... +.+...+..+...|...|++++|.+.+.+.....++ .+...+..+...|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 333334444444444444332 123444444444444444444444444443222222 123556666666666666666
Q ss_pred HHHHHHHH
Q 040580 273 LQREFMRM 280 (412)
Q Consensus 273 a~~~~~~m 280 (412)
|...|++-
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=9.8e-07 Score=72.67 Aligned_cols=141 Identities=8% Similarity=-0.034 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC----CHHHHHHHH
Q 040580 62 LAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG----CFNEIISII 137 (412)
Q Consensus 62 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~ 137 (412)
+|++.|++..+.| ++..+..|...+...+++++|...|+...+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555555555543 55555555555656666666666666665544 34445555555555 4 556666666
Q ss_pred HHHhhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHh----cCCHHHHHHHHH
Q 040580 138 DQVSCRNADLLPEVYSRAISCFGK----QGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSR----FGSLTEMETAYG 208 (412)
Q Consensus 138 ~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~----~g~~~~a~~~~~ 208 (412)
++..+.+ ++..+..|-..|.. .+++++|+..|++..+.|... ....+..|-..|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6554433 23444445444444 455555555555555443210 13334444444444 344444444444
Q ss_pred HHHh
Q 040580 209 RLKR 212 (412)
Q Consensus 209 ~~~~ 212 (412)
...+
T Consensus 154 ~A~~ 157 (212)
T 3rjv_A 154 GSSS 157 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=5.5e-06 Score=71.81 Aligned_cols=133 Identities=8% Similarity=-0.092 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHhcCCCC-CHHhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH----Hcc---CCH
Q 040580 61 HLAHQLVNTVKSEGLLP-DNSTLCALMLCYANNG--FVLEAQVVWEELLSSSFVLSVQVLSDLMDAY----GRI---GCF 130 (412)
Q Consensus 61 ~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---~~~ 130 (412)
++|+++++.+... .| +...|+.--..+...+ ++++++.+++.++... +-+..+|+.--..+ ... +++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4555555555543 22 2333444444444444 5555555555555443 33334444433333 333 445
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 040580 131 NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE--LMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198 (412)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 198 (412)
++++++++++.+.+ +-+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-.....+.+
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 55555555554443 334444444444444444444 555555555444322 3344443333333333
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.82 E-value=7e-07 Score=74.30 Aligned_cols=185 Identities=16% Similarity=-0.018 Sum_probs=125.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-Cc-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH---hH
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSF-VL-SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE---VY 152 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~ 152 (412)
+...+..+...+.+.|++++|...|+.+.+... .| ....+..+..++.+.|++++|...|+++.+.. +-++. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 445566677778899999999999999987531 12 24678888899999999999999999987754 22222 44
Q ss_pred HHHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040580 153 SRAISCFGK------------------QGQLELMENTLKEMVSRGFSVDSA-TGNAFIIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 153 ~~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
..+..++.. .|++++|+..|++..+. .|+.. ........ + .+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~------~~~~~~~-- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----V------FLKDRLA-- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----H------HHHHHHH--
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----H------HHHHHHH--
Confidence 444444443 46777888888777765 34332 22111110 0 0001110
Q ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcc--hHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 214 RHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLG--NLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 214 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
.....+...|.+.|++++|...++++....++.. ..++..+..+|.+.|+.++|...++.+...
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 1123456788899999999999999765544421 357888999999999999999999998876
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.81 E-value=9.8e-06 Score=70.24 Aligned_cols=217 Identities=7% Similarity=-0.006 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC--CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH----Hhc---CChH
Q 040580 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG--CFNEIISIIDQVSCRNADLLPEVYSRAISCF----GKQ---GQLE 166 (412)
Q Consensus 96 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~~ 166 (412)
++|+.+++.++..+ +-+..+|+.--..+...| +++++++.++.+...+ +-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555543 334455555555555555 5666666666555443 23333444322222 222 4555
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc------HHHH
Q 040580 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLT--EMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK------FFML 238 (412)
Q Consensus 167 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~~a 238 (412)
+++.+++.+.+...+ +...|+.-...+.+.|+++ ++.+.++.+.+... -|...|+.-...+.+.+. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 666666655554222 4445554444455555555 55555555555432 244444444444444443 5555
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHH-HHHHHHHHHHcC--CCCcHhHHHHHHHHHHccCChhHHHHHHHHH
Q 040580 239 GEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKS-LQREFMRMSEAG--FHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315 (412)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 315 (412)
.+.+++.-...+. |..+|+.+-..+.+.|+..+ +..+..+..+.+ -..+...+..+...+.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5555543222222 33555555555555554333 223333333211 1224455555556666666666666666665
Q ss_pred Hh
Q 040580 316 KH 317 (412)
Q Consensus 316 ~~ 317 (412)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=2.9e-07 Score=80.65 Aligned_cols=174 Identities=9% Similarity=-0.066 Sum_probs=131.7
Q ss_pred CCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhc----CCCC-CHHhHHHHHHHHHhcCChHHHHH
Q 040580 26 PKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSE----GLLP-DNSTLCALMLCYANNGFVLEAQV 100 (412)
Q Consensus 26 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~ 100 (412)
.++++.|...|+.. ...|...|++++|...|.+..+. |-.+ -..+|+.+...|.+.|++++|..
T Consensus 29 ~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 58899998887764 56778899999999999887653 2111 14578888999999999999999
Q ss_pred HHHHHHhC----CCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-----CHHhHHHHHHHHHhcCChHHHHH
Q 040580 101 VWEELLSS----SFVL-SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL-----LPEVYSRAISCFGKQGQLELMEN 170 (412)
Q Consensus 101 ~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~ 170 (412)
.|++..+. |-++ -..+++.+...|.+ |++++|.+.|++..+..... ...+++.+...+.+.|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987653 2111 24678889999988 99999999999876532111 13478889999999999999999
Q ss_pred HHHHHHHC----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040580 171 TLKEMVSR----GFSVD-SATGNAFIIYYSRFGSLTEMETAYGRLK 211 (412)
Q Consensus 171 ~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 211 (412)
.|++..+. +..+. ...+..+..++...|++++|...|++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99988653 22221 2256666677778899999999999887
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=8.1e-06 Score=70.80 Aligned_cols=166 Identities=10% Similarity=0.040 Sum_probs=92.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hHHH
Q 040580 119 DLMDAYGRIGCFNEIISIIDQVSCRNADLLPE------VYSRAISCFGKQGQLELMENTLKEMVSRGFS-VD----SATG 187 (412)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~ 187 (412)
..+..+...|++++|.+++++..... ..++. .+..+...+...|++++|+..|++..+.... ++ ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34566777777777777777776532 22222 2223455555666777777777777663222 12 2246
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 040580 188 NAFIIYYSRFGSLTEMETAYGRLKRSR--HLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYA 265 (412)
Q Consensus 188 ~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 265 (412)
+.+...|...|++++|...|++..+.- .+.+. .....++..+...|.
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~nlg~~y~ 207 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNE-------------------------------EFDVKVRYNHAKALY 207 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch-------------------------------hHHHHHHHHHHHHHH
Confidence 667777777777777777777665310 00000 001235556666666
Q ss_pred cCCChHHHHHHHHHHHH----cCCCCc-HhHHHHHHHHHHccCC-hhHHHHHHHHHH
Q 040580 266 GNFKMKSLQREFMRMSE----AGFHPD-LTTFNIRAVAFSRMSM-FWDLHLSLEHMK 316 (412)
Q Consensus 266 ~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~m~ 316 (412)
+.|++++|+..+++..+ .+..+. ..+|..+..++.+.|+ .++|.+.+++..
T Consensus 208 ~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66666666666655442 222222 4556666666666663 466666665554
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.73 E-value=2.5e-05 Score=72.94 Aligned_cols=344 Identities=8% Similarity=-0.122 Sum_probs=195.9
Q ss_pred CChHHHHHHHHHhhc--cChhhHHHHHHHHhcCCC-hhHHHHHHHHHHhc-CCC-CCHHhHHHHHHHHH----hcCChHH
Q 040580 27 KNGDLARKIIRYRKQ--EGFVDCASLVEDLGRKKK-PHLAHQLVNTVKSE-GLL-PDNSTLCALMLCYA----NNGFVLE 97 (412)
Q Consensus 27 ~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~-g~~-p~~~~~~~ll~~~~----~~~~~~~ 97 (412)
|+++.+..+|++... |+...|...+....+.+. .+....+|+..... |.. ++...|...+.-+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 778888899888665 677888888887776653 45667778777653 433 36667777666543 2456788
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHc-------------cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC-
Q 040580 98 AQVVWEELLSSSFVLSVQVLSDLMDAYGR-------------IGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG- 163 (412)
Q Consensus 98 a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g- 163 (412)
+..+|+..++.....-...|......-.. .+.+..|..+++++...--..+...|...+.--...+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 88899888874211112233322221111 1122333444444332100112335555544432221
Q ss_pred -C-----hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHH
Q 040580 164 -Q-----LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM 237 (412)
Q Consensus 164 -~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 237 (412)
- .+.+..+|+++.... ..+...|-..+.-+.+.|+++.|..+++..... +.+...+. .|+...+.++
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~ 260 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEA 260 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTH
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhH
Confidence 1 345677888887753 235667777788888899999999999999887 33433332 2322211112
Q ss_pred HHH-HHHHHhcC--------CCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHc-cCChhH
Q 040580 238 LGE-FLRDVGLG--------RKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSR-MSMFWD 307 (412)
Q Consensus 238 a~~-~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~ 307 (412)
..+ +.+..... ........|-..+....+.++.+.|..+|++. +.. .++...|......-.. .++.+.
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHH
Confidence 111 11111000 00111255777777777788899999999998 321 1233333322221122 236899
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHHHHHHHhc
Q 040580 308 LHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFK 384 (412)
Q Consensus 308 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~ 384 (412)
|..+|+...+.-. -+...+...++-..+.|+.+.+..+|+.... ....|...+..=.. |+...+..++.+..
T Consensus 339 ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 339 PYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLEK----TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999998876421 1344556667777788999999999999821 23334443333234 88888878777654
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.73 E-value=7.2e-07 Score=69.90 Aligned_cols=127 Identities=9% Similarity=-0.077 Sum_probs=67.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 125 (412)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555555556666666666666655542 2245555555555666666666666666655543 334555555555666
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCHHhHHHH--HHHHHhcCChHHHHHHHHHH
Q 040580 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRA--ISCFGKQGQLELMENTLKEM 175 (412)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m 175 (412)
..|++++|.+.|++..+.. +.++..+..+ ...+...|++++|+..+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666555443 2233333222 22244455555555555443
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=6.7e-07 Score=66.10 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=46.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (412)
..+..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.++.++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444444455555555555555544432 2334444555555555555555555555544432 23344445555555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 040580 160 GKQGQLELMENTLKEMVS 177 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~ 177 (412)
...|++++|...|+++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555444
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=1.2e-05 Score=69.79 Aligned_cols=211 Identities=9% Similarity=-0.094 Sum_probs=130.0
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH---hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE---VYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 101 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
.+..+.+....|+..+...+...+.-.- + .++. .....+.. .+...+..+...|++++|..++++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI--I---HFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3444444334677666666666554221 1 1111 11122222 233346677788888888888888776
Q ss_pred CCC-CCChH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCc
Q 040580 178 RGF-SVDSA----TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL 252 (412)
Q Consensus 178 ~g~-~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 252 (412)
... .|+.. .+..+...+...|++++|...++...+.....+. ...
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~------------------------------~~~ 153 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID------------------------------VYQ 153 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC------------------------------TTH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc------------------------------HHH
Confidence 421 22211 2223555556667777777777777663221110 000
Q ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHHHH----c-CCCCc-HhHHHHHHHHHHccCChhHHHHHHHHHHh----CCCCC
Q 040580 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSE----A-GFHPD-LTTFNIRAVAFSRMSMFWDLHLSLEHMKH----ESVGP 322 (412)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~p 322 (412)
...+++.+...|...|++++|+..|++..+ . +..|. ..++..+...|.+.|++++|...+++..+ .+..+
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 124678888888888888888888887763 1 22233 34788899999999999999999988764 34444
Q ss_pred C-HhhHHHHHHHHHhccc-cchHHHHHHhc
Q 040580 323 D-LVTYGCVVDAYLDKRL-GRNLDFGLSKM 350 (412)
Q Consensus 323 ~-~~~~~~li~~~~~~~~-~~~a~~~~~~m 350 (412)
. ..+|..+-.+|.+.|+ .++|.+.+++.
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 3 6788888889999995 48888887665
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=3.6e-06 Score=73.05 Aligned_cols=163 Identities=6% Similarity=-0.136 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-C----HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC---CC--HH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVL-S----VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD---LL--PE 150 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~--~~ 150 (412)
.+...+..+...|++++|.+.++...+..... + ...+..+...+...|++++|.+.+++....... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 33344445555555555555555554432110 0 122333444455555555555555554432110 11 22
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH---C-CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CH
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVS---R-GFSV--DSATGNAFIIYYSRFGSLTEMETAYGRLKRS----RHLI-DK 219 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 219 (412)
+|+.+...|...|++++|+..|++..+ . +-.+ ...++..+...|.+.|++++|...+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 555555555555666666555555441 1 1011 1134555555555566666666555554332 1111 13
Q ss_pred HHHHHHHHHHHhcccHHHH-HHHHH
Q 040580 220 EGIRAVSFTYLKERKFFML-GEFLR 243 (412)
Q Consensus 220 ~~~~~li~~~~~~~~~~~a-~~~~~ 243 (412)
.+|..+...|.+.|++++| ...++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4455555555555655555 44343
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=2.2e-06 Score=70.39 Aligned_cols=129 Identities=11% Similarity=0.032 Sum_probs=107.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (412)
.+..+...+...|++++|...|+... .|+..++..+..++.+.|++++|.+.|++..+.+ +.++..|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677889999999999998774 6788899999999999999999999999988765 556778999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCC--------------C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040580 161 KQGQLELMENTLKEMVSRGFS--------------V-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 214 (412)
..|++++|+..|++..+.... | ....+..+..++.+.|++++|...|+...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999998875321 1 12567778888999999999999999988764
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.68 E-value=1.3e-06 Score=68.48 Aligned_cols=129 Identities=9% Similarity=-0.019 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (412)
..+..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|.+.+++..... +.++..|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445666667777788888888887777654 4467777777777777788888888777776654 44566777777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 040580 160 GKQGQLELMENTLKEMVSRGFSVDSATGN--AFIIYYSRFGSLTEMETAYGRLK 211 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~ 211 (412)
...|++++|...|++..+.... +...+. .....+.+.|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777664221 233332 23333556667777766665543
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=1.4e-06 Score=64.38 Aligned_cols=112 Identities=13% Similarity=0.025 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 040580 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123 (412)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 123 (412)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|..+++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455556666666666666666666665542 2345556666666666666666666666666543 3455566666666
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 040580 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (412)
+...|++++|.+.|+++.+.. +.++..+..+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 120 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 120 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 666666666666666665443 2333444444333
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.66 E-value=3.2e-07 Score=73.13 Aligned_cols=97 Identities=9% Similarity=-0.001 Sum_probs=41.2
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHccCCH--HHHHHHHHHHhhcCCCCCHHhHHHH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA-YGRIGCF--NEIISIIDQVSCRNADLLPEVYSRA 155 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~l 155 (412)
...+..+...+...|++++|...|+...+.. +.+...+..+..+ +...|++ ++|...|++..+.+ +.++..+..+
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 121 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLL 121 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3344444444444444444444444444332 2233344444444 3344444 44444444444332 2233344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 040580 156 ISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~m~~ 177 (412)
...+...|++++|...|++..+
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHh
Confidence 4444444444444444444444
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=2e-05 Score=73.56 Aligned_cols=352 Identities=8% Similarity=-0.114 Sum_probs=203.7
Q ss_pred CCC-ChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC-hHHHHHHH
Q 040580 25 HPK-NGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF-VLEAQVVW 102 (412)
Q Consensus 25 ~~~-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 102 (412)
+.| +++.|+.+|++... .+-. |+++.+..+|++.... .|+...|..-+.-..+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 456 37788888877543 1111 7899999999999874 5799999988887777663 46677888
Q ss_pred HHHHhC-CC-CcCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCH--HhHHHHHHHHHh-------------
Q 040580 103 EELLSS-SF-VLSVQVLSDLMDAYGR----IGCFNEIISIIDQVSCRNADLLP--EVYSRAISCFGK------------- 161 (412)
Q Consensus 103 ~~m~~~-~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~------------- 161 (412)
+..+.. |. +++...|...+..+.. .++.+.+.++|++.... ++.. ..|......-..
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 887763 43 4477889988887653 46788999999999763 2221 133322221111
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc--CC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 040580 162 QGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF--GS-----LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234 (412)
Q Consensus 162 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (412)
.+.+..|..+++++...--..+...|...+.--... |- .+.+..+|++..... +.++..|...+..+.+.|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 122333444444443210001233555544432221 11 345677888887753 4568889888998999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcC---------CCC---cHhHHHHHHHHHHcc
Q 040580 235 FFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAG---------FHP---DLTTFNIRAVAFSRM 302 (412)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p---~~~~~~~ll~~~~~~ 302 (412)
+++|.+++++.... +. +...|.. |+...+.++. ++.+.+.- ..+ ....|...+....+.
T Consensus 229 ~~~ar~i~erAi~~-P~-~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 229 KEKAKKVVERGIEM-SD-GMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp HHHHHHHHHHHHHH-CC-SSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CC-cHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 99999999986444 32 2233332 2221111111 23322210 011 124566666666678
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-ccccchHHHHHHhc-cCC-CCCCcccHHHHHHHHhc-CCcccHHH
Q 040580 303 SMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLD-KRLGRNLDFGLSKM-NLD-DSPVVSTDPYVFEAFGK-GDFHSSSE 378 (412)
Q Consensus 303 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m-~~~-~~p~~~~~~~li~~~~~-~~~~~a~~ 378 (412)
+..+.|..+|++. ... .++...|......-.+ .++.+.|.++|+.. ..- ..|+ .+...++...+ |+.+.|..
T Consensus 300 ~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~--~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL--LKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHcCCHHHHHH
Confidence 8899999999998 321 1234444322222222 33688999999988 322 2222 23444554555 88888888
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCccccc
Q 040580 379 AFLEFKRQRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 407 (412)
+|.+.. .....|...++--...|+.+.+
T Consensus 376 l~er~~-k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 376 LFKRLE-KTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHSC-CBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHCCCHHHH
Confidence 888763 4566677666655556665443
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=1.2e-06 Score=65.36 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 040580 82 LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161 (412)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 161 (412)
+......+.+.|++++|...|++.++.. +.+..+|..+..++.+.|++++|++.|++..+.+ +.++..|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 4444444555555555555555554443 3344455555555555555555555555544433 2334445555555555
Q ss_pred cCChHHHHHHHHHHHH
Q 040580 162 QGQLELMENTLKEMVS 177 (412)
Q Consensus 162 ~g~~~~a~~~~~~m~~ 177 (412)
.|++++|++.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=1.1e-06 Score=65.41 Aligned_cols=117 Identities=9% Similarity=-0.067 Sum_probs=59.1
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 040580 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124 (412)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 124 (412)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344445555555555555555555555432 2244455555555555555555555555555442 33345555555555
Q ss_pred HccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 040580 125 GRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ 164 (412)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 164 (412)
.+.|++++|.+.|++..+.. +.++..+..+...+.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 55555555555555554433 2234444444444444443
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=3.1e-07 Score=74.74 Aligned_cols=156 Identities=11% Similarity=-0.035 Sum_probs=77.6
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh----CCC-CcCHHHHHHHHHHHHccCCH
Q 040580 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS----SSF-VLSVQVLSDLMDAYGRIGCF 130 (412)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~-~~~~~~~~~li~~~~~~~~~ 130 (412)
..|++++|.++++.+... ......++..+...+...|++++|...+++..+ .+. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 112344555555555666666666666555543 111 12334556666666666666
Q ss_pred HHHHHHHHHHhhc--CCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCC
Q 040580 131 NEIISIIDQVSCR--NADLL----PEVYSRAISCFGKQGQLELMENTLKEMVSR----GFSV-DSATGNAFIIYYSRFGS 199 (412)
Q Consensus 131 ~~a~~~~~~m~~~--~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~ 199 (412)
++|.+.+++..+. ..+.+ ..++..+...+...|++++|...+++.... +-.+ -..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666554332 01111 124555566666666666666666655421 1100 11234555566666677
Q ss_pred HHHHHHHHHHHHh
Q 040580 200 LTEMETAYGRLKR 212 (412)
Q Consensus 200 ~~~a~~~~~~~~~ 212 (412)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776666665543
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=1.4e-06 Score=65.02 Aligned_cols=98 Identities=5% Similarity=-0.103 Sum_probs=57.8
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 040580 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAY 124 (412)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 124 (412)
..+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|...|+..++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345555556666666666666666665542 2345556666666666666666666666666544 44455666666666
Q ss_pred HccCCHHHHHHHHHHHhhcC
Q 040580 125 GRIGCFNEIISIIDQVSCRN 144 (412)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~ 144 (412)
...|++++|.+.|++..+.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 66666666666666665443
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=1.5e-06 Score=65.06 Aligned_cols=99 Identities=8% Similarity=0.013 Sum_probs=57.8
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (412)
+...+..+...+.+.|++++|...|+...+.. +.+..++..+..++...|++++|.+.+++..+.. +.++..+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455555566666666666666666665543 3355566666666666666666666666655543 334455556666
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 040580 158 CFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 158 ~~~~~g~~~~a~~~~~~m~~~ 178 (412)
.+.+.|++++|...|++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666665543
No 132
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.62 E-value=1.9e-07 Score=75.98 Aligned_cols=158 Identities=16% Similarity=0.056 Sum_probs=87.1
Q ss_pred cccccccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCC-CC--------------H
Q 040580 18 NVPSHQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLL-PD--------------N 79 (412)
Q Consensus 18 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~--------------~ 79 (412)
..+......|+++++...++.-.+. ....+..+...+...|++++|+..|++..+.... |+ .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344445556666666666543322 4456777777888888888888888888764211 10 1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (412)
..+..+..++.+.|++++|...++...+.. +.+...+..+..++...|++++|.+.|++..+.. +-++..+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 566666666777777777777777776653 4456667777777777777777777777766553 33455666666666
Q ss_pred HhcCChHHHH-HHHHHHHH
Q 040580 160 GKQGQLELME-NTLKEMVS 177 (412)
Q Consensus 160 ~~~g~~~~a~-~~~~~m~~ 177 (412)
...++.+++. ..|..|..
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6555555554 44444433
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=7.8e-07 Score=72.36 Aligned_cols=151 Identities=7% Similarity=-0.101 Sum_probs=63.6
Q ss_pred CCCChHHHHH---HHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHh----cCCCC-CHHhHHHHHHHHHhcCChH
Q 040580 25 HPKNGDLARK---IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKS----EGLLP-DNSTLCALMLCYANNGFVL 96 (412)
Q Consensus 25 ~~~~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~~~~ 96 (412)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++... .|..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 32221112333444555555555555555555555433 11111 1233444444555555555
Q ss_pred HHHHHHHHHHhC----CCC--cCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC-CCCHH----hHHHHHHHHHhcCCh
Q 040580 97 EAQVVWEELLSS----SFV--LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA-DLLPE----VYSRAISCFGKQGQL 165 (412)
Q Consensus 97 ~a~~~~~~m~~~----~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~----~~~~li~~~~~~g~~ 165 (412)
+|...+++..+. +-. ....++..+...+...|++++|.+.+++...... ..++. ++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 555555544432 101 1123344455555555555555555554432110 01111 234444445555555
Q ss_pred HHHHHHHHHH
Q 040580 166 ELMENTLKEM 175 (412)
Q Consensus 166 ~~a~~~~~~m 175 (412)
++|...+++.
T Consensus 164 ~~A~~~~~~a 173 (203)
T 3gw4_A 164 LEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=1.3e-06 Score=65.38 Aligned_cols=118 Identities=10% Similarity=-0.035 Sum_probs=96.3
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 55678888889999999999999999988763 3367888889999999999999999999998865 557888999999
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG 163 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 163 (412)
++.+.|++++|.+.|++..+.. +.++..+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 9999999999999999987654 334456666666665544
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=1.8e-06 Score=64.26 Aligned_cols=118 Identities=8% Similarity=0.034 Sum_probs=69.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (412)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..... +.++..+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3455556666666666666666666666543 3455666666666666666666666666665543 3345566666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 040580 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 199 (412)
+...|++++|...|++..+... .+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666655421 133444445555544443
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=5.3e-07 Score=77.83 Aligned_cols=97 Identities=8% Similarity=-0.080 Sum_probs=52.7
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (412)
...+..+...+.+.|++++|...|+...+.. +.+...|..+..++.+.|++++|.+.+++..+.+ +-++..+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444555555555556666665555555543 3345555555555556666666666655554432 2334455555555
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 040580 159 FGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~ 177 (412)
+...|++++|+..|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5556666666655555543
No 137
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.58 E-value=8.3e-05 Score=65.25 Aligned_cols=176 Identities=9% Similarity=-0.110 Sum_probs=124.0
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc-C-C
Q 040580 53 DLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG-FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI-G-C 129 (412)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~-~ 129 (412)
...+.+..++|+++++++.... +-+..+|+.--..+...+ .+++++.+++.+.+.. +-+..+|+.-...+.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3344556678999999998864 225566777777777777 5999999999998876 66778888877777776 6 8
Q ss_pred HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--
Q 040580 130 FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE--------LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS-- 199 (412)
Q Consensus 130 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-- 199 (412)
+++++++++++.+.+ +-+..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+-....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 889999999998765 456667776555555545555 888888888886543 67777777777777765
Q ss_pred -----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Q 040580 200 -----LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233 (412)
Q Consensus 200 -----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 233 (412)
++++.+.+.+..... +-|...|+-+-..+.+.|
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 567777777666544 235666665555554444
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=1.1e-06 Score=67.78 Aligned_cols=96 Identities=11% Similarity=0.066 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (412)
.+..+...+.+.|++++|...|+...+.. |.+...|..+..+|.+.|++++|.+.|++..+.+ +-++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 44555555556666666666666665543 3455556666666666666666666666655544 334455555666666
Q ss_pred hcCChHHHHHHHHHHHHC
Q 040580 161 KQGQLELMENTLKEMVSR 178 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~~ 178 (412)
+.|++++|+..|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665553
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=8.5e-07 Score=76.56 Aligned_cols=193 Identities=11% Similarity=-0.021 Sum_probs=126.1
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
+...+..+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567778888999999999999999998863 3378889999999999999999999999999875 567889999999
Q ss_pred HHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH
Q 040580 123 AYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTE 202 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 202 (412)
++...|++++|.+.|++..+.+ +-++..+...+....+. .++ .-+......-..++..... .+..+ ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~-~l~~l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHS-YLTRL-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHH-HHHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHH-HHHHH-HHHHHHH
Confidence 9999999999999999886543 11111222122211111 111 1122233333333333333 33333 2578888
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-ccHHHHHHHHHHHh
Q 040580 203 METAYGRLKRSRHLIDKE-GIRAVSFTYLKE-RKFFMLGEFLRDVG 246 (412)
Q Consensus 203 a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-~~~~~a~~~~~~~~ 246 (412)
|.+.++...+. .|+.. ....+-..+.+. +.++++.++|.+..
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88888776654 34433 333333333333 55677777777653
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=2.5e-05 Score=67.66 Aligned_cols=124 Identities=5% Similarity=-0.135 Sum_probs=66.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHhcccHHHHHHHHHHHh----cCCCCc--chHHHHHHH
Q 040580 193 YYSRFGSLTEMETAYGRLKRSRH---LID--KEGIRAVSFTYLKERKFFMLGEFLRDVG----LGRKDL--GNLLWNLLL 261 (412)
Q Consensus 193 ~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~--~~~~~~~li 261 (412)
.+...|++++|...++...+... .+. ..+++.+...|...|++++|.+.+++.- ..+.++ ...+++.+.
T Consensus 124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 2qfc_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHH
Confidence 33444555555555555443211 111 2244444444445555555554444421 111111 124677777
Q ss_pred HHHhcCCChHHHHHHHHHHHHc----CCCCc-HhHHHHHHHHHHccCChhHH-HHHHHHHH
Q 040580 262 LSYAGNFKMKSLQREFMRMSEA----GFHPD-LTTFNIRAVAFSRMSMFWDL-HLSLEHMK 316 (412)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a-~~~~~~m~ 316 (412)
..|...|++++|+..+++..+. +..+. ..+|..+...|.+.|+.++| ...+++..
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 7888888888888887776532 11111 45677777788888888888 66666543
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=2.3e-06 Score=75.94 Aligned_cols=124 Identities=10% Similarity=-0.120 Sum_probs=66.4
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC--------------HHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD--------------NSTLCALMLCYANNGFVLEAQVVWEELLSS 108 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (412)
+...|..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++..++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344566666666666666666666666665421111 245555555555555555555555555554
Q ss_pred CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168 (412)
Q Consensus 109 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 168 (412)
. +.+...|..+..+|...|++++|...|++..+.. +-++..+..+...+.+.|+.+++
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 3345555555555555555555555555554443 33344555555555555555544
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.53 E-value=1.8e-06 Score=68.65 Aligned_cols=122 Identities=6% Similarity=-0.036 Sum_probs=99.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH-HHhcCCh--H
Q 040580 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC-FGKQGQL--E 166 (412)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~ 166 (412)
...|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.+ +.++..+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45678889999999888765 5678899999999999999999999999988765 4567788888888 7789998 9
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040580 167 LMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 167 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 214 (412)
+|...|++..+.... +...+..+...+...|++++|...++...+..
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999886322 46677788889999999999999999988764
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=2.8e-06 Score=72.12 Aligned_cols=187 Identities=8% Similarity=-0.073 Sum_probs=94.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHH-------HHHHHccCCHHHHHHHHHHHhh------------cCC----C-
Q 040580 91 NNGFVLEAQVVWEELLSSSFVLSVQVLSDL-------MDAYGRIGCFNEIISIIDQVSC------------RNA----D- 146 (412)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~------------~~~----~- 146 (412)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..++.-.. .|. .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4667777777777777654 4445666655 3444444444444444443322 110 0
Q ss_pred --CC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----
Q 040580 147 --LL-PEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDK---- 219 (412)
Q Consensus 147 --~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---- 219 (412)
.+ .+.+-.+...+...|++++|.++|..+...+ |+....-.+...+.+.+++++|+..|+...+. |++
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHH
Confidence 00 1133345556666777777777776665543 33323333444566677777777777533321 222
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCc--chHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 220 EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL--GNLLWNLLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 220 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
..+..+-.++...|++++|...|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 234444555555555555555555543222111 1234444455555556666666666655543
No 144
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.53 E-value=3e-05 Score=68.06 Aligned_cols=175 Identities=7% Similarity=-0.072 Sum_probs=133.2
Q ss_pred cccCCCChHHHHHHHHHhhcc---ChhhHHHHHHHHhcCC-ChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc-C-Ch
Q 040580 22 HQTHPKNGDLARKIIRYRKQE---GFVDCASLVEDLGRKK-KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN-G-FV 95 (412)
Q Consensus 22 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~-~~ 95 (412)
...+.+..++|+..++.+... +..+|+.--..+...| .++++++.++.+.... +-+..+|+.-...+.+. + ++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 344555667899988887753 5566776666666777 5999999999999875 33777888877777666 6 89
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHH--------HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC---
Q 040580 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN--------EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ--- 164 (412)
Q Consensus 96 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--- 164 (412)
++++.+++.+.+.. +.|..+|+--.-.+.+.|.++ ++++.++++.+.+ +-+...|+..-..+.+.+.
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 99999999999876 668888887777766666666 8999999998877 5677789888877777776
Q ss_pred ----hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 040580 165 ----LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSL 200 (412)
Q Consensus 165 ----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 200 (412)
++++++.+++....... |...|+-+-..+.+.|+.
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 68899999888875432 667787766666666543
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=6.7e-07 Score=68.98 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 040580 82 LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161 (412)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 161 (412)
+..+...+.+.|++++|...|+...+.+ +.+...|..+..+|.+.|++++|.+.|++....+ +-++..+..+..++..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344444445555555555555544433 3344444445555555555555555555544433 2333444444445555
Q ss_pred cCChHHHHHHHHHHHH
Q 040580 162 QGQLELMENTLKEMVS 177 (412)
Q Consensus 162 ~g~~~~a~~~~~~m~~ 177 (412)
.|++++|...|++..+
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555544443
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.49 E-value=1.9e-06 Score=66.56 Aligned_cols=103 Identities=7% Similarity=-0.028 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 040580 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192 (412)
Q Consensus 113 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 192 (412)
+...+..+...+.+.|++++|.+.|++....+ +-++..|..+..++...|++++|+..|++..+.... +...+..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 56788889999999999999999999998876 667889999999999999999999999999885322 5677888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 040580 193 YYSRFGSLTEMETAYGRLKRSRHLIDK 219 (412)
Q Consensus 193 ~~~~~g~~~~a~~~~~~~~~~~~~~~~ 219 (412)
++.+.|++++|...|+...+.. |+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 9999999999999999998764 444
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=1.5e-06 Score=67.00 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=85.8
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040580 101 VWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF 180 (412)
Q Consensus 101 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 180 (412)
.|+.+.+.. +.+...+..+...+.+.|++++|...|++....+ +.++..|..+..++...|++++|+..|++......
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 455555543 3456677888888889999999999999887765 56777888888888999999999999998877532
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040580 181 SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 181 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
. +...+..+..++...|++++|...|+...+.
T Consensus 87 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 X-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 4567777888888999999999988887764
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=1.3e-05 Score=68.06 Aligned_cols=188 Identities=8% Similarity=-0.050 Sum_probs=133.3
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCHHhHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCh--------------
Q 040580 126 RIGCFNEIISIIDQVSCRNADLLPEVYSRA-------ISCFGKQGQLELMENTLKEMVSRGFSVDS-------------- 184 (412)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------------- 184 (412)
..++...|.+.|.+..+.+ +-.++.|..+ ...+.+.+...+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999998876 5567788877 4555555555555554444333 22221
Q ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCc-chH
Q 040580 185 --------ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDL-GNL 255 (412)
Q Consensus 185 --------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 255 (412)
...-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|...|+.......+. ...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123345677888999999999998887654 544466666667888999999999998553332111 124
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc--HhHHHHHHHHHHccCChhHHHHHHHHHHhC
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPD--LTTFNIRAVAFSRMSMFWDLHLSLEHMKHE 318 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 318 (412)
++..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 677888899999999999999998874332254 335556777888999999999999998874
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=1.3e-05 Score=58.23 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (412)
.+..+...+...|++++|...++...+.. +.+...+..+..++.+.|++++|...+++..+.. +.++..+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444444444555555555555444432 2344444444455555555555555555444332 223344444444455
Q ss_pred hcCChHHHHHHHHHHHH
Q 040580 161 KQGQLELMENTLKEMVS 177 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~ 177 (412)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555544444
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=6.9e-06 Score=61.08 Aligned_cols=95 Identities=13% Similarity=0.040 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (412)
.+..+...+.+.|++++|...|+..++.. +.+...|..+..++.+.|++++|.+.|++..+.+ +.++..|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444445555555555555555555443 3344555555555555555555555555554443 233445555555555
Q ss_pred hcCChHHHHHHHHHHHH
Q 040580 161 KQGQLELMENTLKEMVS 177 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~ 177 (412)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555544
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=1.3e-05 Score=58.31 Aligned_cols=110 Identities=10% Similarity=-0.118 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 040580 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123 (412)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 123 (412)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3467778888889999999999999998763 3477888889999999999999999999998875 5578889999999
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 040580 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (412)
+...|++++|.+.+++..+.+ +.++..+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 999999999999999987654 34444554443
No 152
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.42 E-value=3.7e-06 Score=60.67 Aligned_cols=94 Identities=11% Similarity=-0.150 Sum_probs=39.0
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc--CHHHHHHHHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVL--SVQVLSDLMDA 123 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~ 123 (412)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +. +..++..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33344444444444444444444444332 1233334444444444444444444444444332 22 23444444444
Q ss_pred HHcc-CCHHHHHHHHHHHh
Q 040580 124 YGRI-GCFNEIISIIDQVS 141 (412)
Q Consensus 124 ~~~~-~~~~~a~~~~~~m~ 141 (412)
+.+. |++++|.+.+++..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHG
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 4444 44444444444443
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=0.00014 Score=66.63 Aligned_cols=159 Identities=12% Similarity=-0.025 Sum_probs=86.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcC----------------HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC-C
Q 040580 86 MLCYANNGFVLEAQVVWEELLSSSFVLS----------------VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL-L 148 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~ 148 (412)
.+.+.+.|++++|.+.|..+.+...... ...+..|...|.+.|++++|.+.+.++...--.. +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888888876532111 1235667777777777777777777654321111 1
Q ss_pred HH----hHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--
Q 040580 149 PE----VYSRAISCFGKQGQLELMENTLKEMVS----RGFSVD-SATGNAFIIYYSRFGSLTEMETAYGRLKRS--RH-- 215 (412)
Q Consensus 149 ~~----~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~-- 215 (412)
.. +.+.+-..+...|+++.+..++.+... .+..+. ..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 222222333345667777777766533 222222 245556666677777777777776665432 11
Q ss_pred CC-CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 040580 216 LI-DKEGIRAVSFTYLKERKFFMLGEFLRD 244 (412)
Q Consensus 216 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 244 (412)
.+ ...++..++..|...|++++|...+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 11 123444445555555555555555544
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=6.1e-06 Score=59.46 Aligned_cols=101 Identities=9% Similarity=-0.039 Sum_probs=84.0
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC--CHHhHHHH
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL--LPEVYSRA 155 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l 155 (412)
+...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|.+.|++..+.. +. ++..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45567778888889999999999999988865 5577888889999999999999999999887654 34 57788889
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHCCC
Q 040580 156 ISCFGKQ-GQLELMENTLKEMVSRGF 180 (412)
Q Consensus 156 i~~~~~~-g~~~~a~~~~~~m~~~g~ 180 (412)
...+... |++++|.+.+++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999 999999999999887643
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.40 E-value=1e-05 Score=71.68 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=97.1
Q ss_pred CChhHHHHHHHHHHhcCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---------------HHHHHHHH
Q 040580 58 KKPHLAHQLVNTVKSEGLLP-DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS---------------VQVLSDLM 121 (412)
Q Consensus 58 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~~li 121 (412)
+++++|.+.|+..... .| +...+..+...+.+.|++++|...|++.++.. +.+ ..+|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHH
Confidence 3445555555443322 22 35567777788888888888888888887754 222 46777777
Q ss_pred HHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCH
Q 040580 122 DAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSL 200 (412)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 200 (412)
.+|.+.|++++|.+.|++..+.+ +.++..|..+..++...|++++|+..|++..+. .| +...+..+..++.+.|+.
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776654 445667777777777777777777777777664 23 445666666667777777
Q ss_pred HHH-HHHHHHH
Q 040580 201 TEM-ETAYGRL 210 (412)
Q Consensus 201 ~~a-~~~~~~~ 210 (412)
+++ ...+..|
T Consensus 281 ~~a~~~~~~~~ 291 (336)
T 1p5q_A 281 LAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 666 3344444
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=1.2e-05 Score=60.66 Aligned_cols=98 Identities=8% Similarity=-0.077 Sum_probs=49.9
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAIS 157 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (412)
+...+..+...+...|++++|...|+...+.. +.+...|..+..++...|++++|...+++..+.+ +.++..+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34445555555555555555555555555443 3344555555555555555555555555554433 233445555555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 040580 158 CFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 158 ~~~~~g~~~~a~~~~~~m~~ 177 (412)
.+...|++++|+..|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555554443
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=6.7e-06 Score=62.72 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc
Q 040580 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162 (412)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 162 (412)
..+...+.+.|++++|...|+...+.+ +.+...|..+..++.+.|++++|...|++....+ +-++..+..+..++...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 334444445555555555555554443 3344445555555555555555555555554433 33344444455555555
Q ss_pred CChHHHHHHHHHHHH
Q 040580 163 GQLELMENTLKEMVS 177 (412)
Q Consensus 163 g~~~~a~~~~~~m~~ 177 (412)
|++++|...|++..+
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554443
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.38 E-value=5.4e-06 Score=63.26 Aligned_cols=100 Identities=10% Similarity=-0.051 Sum_probs=86.3
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|...|+...+.+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 44556677778889999999999999998864 3478888999999999999999999999999875 567788899999
Q ss_pred HHHccCCHHHHHHHHHHHhhcC
Q 040580 123 AYGRIGCFNEIISIIDQVSCRN 144 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~ 144 (412)
++...|++++|.+.|++..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999987654
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=2.6e-05 Score=59.44 Aligned_cols=99 Identities=8% Similarity=-0.077 Sum_probs=66.3
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD----NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLS 118 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 118 (412)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4555666677777777777777777777654 344 4556666666777777777777777766653 34566666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhcC
Q 040580 119 DLMDAYGRIGCFNEIISIIDQVSCRN 144 (412)
Q Consensus 119 ~li~~~~~~~~~~~a~~~~~~m~~~~ 144 (412)
.+..++...|++++|.+.|++..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 67777777777777777777666543
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=9.8e-07 Score=71.74 Aligned_cols=145 Identities=11% Similarity=0.027 Sum_probs=72.0
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC----------------HHH
Q 040580 53 DLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS----------------VQV 116 (412)
Q Consensus 53 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~ 116 (412)
.....|+++++.+.|+.-.... ......+..+...+...|++++|...|++..+.. +.+ ..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHH
Confidence 3344455555555553322110 1133455566666777777777777777776642 111 145
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHH
Q 040580 117 LSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYS 195 (412)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~ 195 (412)
+..+..+|.+.|++++|...+++..+.. +.++..+..+..++...|++++|+..|++..+. .| +...+..+..++.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHH
Confidence 5556666666666666666666655543 334445555566666666666666666655543 22 2334444444444
Q ss_pred hcCCHHH
Q 040580 196 RFGSLTE 202 (412)
Q Consensus 196 ~~g~~~~ 202 (412)
..++.++
T Consensus 168 ~~~~~~~ 174 (198)
T 2fbn_A 168 KLKEARK 174 (198)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 4443333
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=8.1e-06 Score=60.68 Aligned_cols=95 Identities=8% Similarity=-0.016 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC--CCC----HHhHHHH
Q 040580 82 LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA--DLL----PEVYSRA 155 (412)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~l 155 (412)
+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++...... .++ +.++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444432 23344444444444444444444444444433210 001 2344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 040580 156 ISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~m~~ 177 (412)
...+...|++++|...|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.31 E-value=1.9e-05 Score=61.73 Aligned_cols=97 Identities=11% Similarity=0.003 Sum_probs=57.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (412)
...+..+...+.+.|++++|...|+..++.. +.+...|..+..+|.+.|++++|...|++..+.+ +-++..|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555666666666666666665543 3355566666666666666666666666665544 3345566666666
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 040580 159 FGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~ 177 (412)
+...|++++|+..|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=1.4e-05 Score=60.18 Aligned_cols=100 Identities=13% Similarity=-0.029 Sum_probs=88.4
Q ss_pred cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 040580 42 EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLM 121 (412)
Q Consensus 42 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 121 (412)
.+...|..+...+...|++++|...|++..... +.+...|..+..++...|++++|...++...+.+ +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467788889999999999999999999998864 3468889999999999999999999999999875 55788999999
Q ss_pred HHHHccCCHHHHHHHHHHHhhc
Q 040580 122 DAYGRIGCFNEIISIIDQVSCR 143 (412)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~ 143 (412)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.7e-05 Score=58.83 Aligned_cols=99 Identities=9% Similarity=-0.057 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 040580 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123 (412)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 123 (412)
...|......+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++...+.+ +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456777788889999999999999998864 4468889999999999999999999999999875 5578899999999
Q ss_pred HHccCCHHHHHHHHHHHhhcC
Q 040580 124 YGRIGCFNEIISIIDQVSCRN 144 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~ 144 (412)
+...|++++|.+.|++..+.+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999886643
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.28 E-value=1.9e-05 Score=58.87 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
..+...+.+.|++++|+..|++.++.. |.+..+|+.+..+|.+.|++++|++.|++.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 334444444444444444444444432 233444444444444444444444444443
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.27 E-value=0.0018 Score=56.52 Aligned_cols=233 Identities=9% Similarity=0.009 Sum_probs=121.2
Q ss_pred hcCCCh-hHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 55 GRKKKP-HLAHQLVNTVKSEGLLPD-NSTLCALMLCYANNGF----------VLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 55 ~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
.+.|.+ ++|+++++.+... .|+ ..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344554 4778888888765 343 3445543333322222 456666777766654 456666766666
Q ss_pred HHHccC--CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 040580 123 AYGRIG--CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ-LELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS 199 (412)
Q Consensus 123 ~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 199 (412)
++.+.+ ++++++++++++.+.+ +-+..+|+.-...+...|. ++++++.++++.+..+. |...|+.....+.+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhh
Confidence 666666 3667777777776665 4555566665555556666 46777777777665433 55555554444433311
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC-----------C
Q 040580 200 LTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN-----------F 268 (412)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g 268 (412)
...+- ..+ . ...+.++++.+.+...-...|+ |..+|+.+-..+.+. +
T Consensus 195 ~~~~~-------~~~-~-------------~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~ 252 (331)
T 3dss_A 195 QPDSG-------PQG-R-------------LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKST 252 (331)
T ss_dssp CC--------------C-------------CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHH
T ss_pred ccccc-------ccc-c-------------cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHH
Confidence 00000 000 0 0012344444444443222222 335555444333333 3
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHHH-----HHHHHHccCChhHHHHHHHHHHh
Q 040580 269 KMKSLQREFMRMSEAGFHPDLTTFNI-----RAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
.++++++.++++.+. .||. .|.. ++.+....|..+++...+.++++
T Consensus 253 ~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 253 VLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 467788888888765 5654 2322 11222234556667777777665
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=1.4e-05 Score=59.27 Aligned_cols=112 Identities=12% Similarity=0.114 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CcC----HHHH
Q 040580 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSF--VLS----VQVL 117 (412)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~ 117 (412)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3457778888899999999999999998764 44778888899999999999999999999887531 122 7788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 040580 118 SDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158 (412)
Q Consensus 118 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (412)
..+..++.+.|++++|.+.|++..+.. |++.....+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 999999999999999999999998754 466655555443
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=2.3e-05 Score=61.34 Aligned_cols=100 Identities=13% Similarity=-0.101 Sum_probs=88.2
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
+...|..+...+.+.|++++|++.|++..+.. +-+...|..+..++.+.|++++|...|+..++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567888889999999999999999998864 3378889999999999999999999999999875 557899999999
Q ss_pred HHHccCCHHHHHHHHHHHhhcC
Q 040580 123 AYGRIGCFNEIISIIDQVSCRN 144 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~ 144 (412)
+|.+.|++++|.+.|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999987754
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=0.0001 Score=67.61 Aligned_cols=194 Identities=7% Similarity=-0.025 Sum_probs=133.0
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCC----------------HHhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCcC
Q 040580 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPD----------------NSTLCALMLCYANNGFVLEAQVVWEELLSS-SFVLS 113 (412)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~ 113 (412)
.+.+.+.|++++|++.|....+...... ...+..+...|...|++++|.+.+..+.+. +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556788999999999999987542211 124778899999999999999999988752 11122
Q ss_pred H----HHHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--
Q 040580 114 V----QVLSDLMDAYGRIGCFNEIISIIDQVSCR----NADLL-PEVYSRAISCFGKQGQLELMENTLKEMVSR--GF-- 180 (412)
Q Consensus 114 ~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~-- 180 (412)
. .+.+.+-..+...|+.+.|.+++++.... +..+. ..++..+...+...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23444555556678999999999877542 22222 347888999999999999999999987653 22
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcccHHHHHHHHHH
Q 040580 181 SV-DSATGNAFIIYYSRFGSLTEMETAYGRLKRSR--HLID----KEGIRAVSFTYLKERKFFMLGEFLRD 244 (412)
Q Consensus 181 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~ 244 (412)
.| ....+..++..|...|++++|..+++...... +..+ ...+..+...+...+++++|...+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 22 23568888999999999999999998876431 1111 12333444444455555555555443
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=5.9e-05 Score=57.37 Aligned_cols=99 Identities=11% Similarity=-0.004 Sum_probs=75.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhH
Q 040580 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS----VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVY 152 (412)
Q Consensus 77 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 152 (412)
.+...+..+...+...|++++|...|+...+.. |+ ...+..+..++...|++++|.+.+++..+.. +.++..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 356677777788888888888888888887753 44 5777778888888888888888888777654 4456677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 153 SRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
..+...+...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777888888888888888877764
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=3.2e-05 Score=57.63 Aligned_cols=106 Identities=12% Similarity=0.025 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----hHHH
Q 040580 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGF--SVD----SATG 187 (412)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~ 187 (412)
...+..+...+.+.|++++|++.|++..+.+ +-++..|+.+..+|.+.|++++|+..+++..+... .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4567788899999999999999999988765 55677899999999999999999999998865321 111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 040580 188 NAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGI 222 (412)
Q Consensus 188 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 222 (412)
..+..++...|++++|...|+...+. .|++.+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 66777788889999999998887764 3555443
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.22 E-value=1.6e-05 Score=58.65 Aligned_cols=88 Identities=9% Similarity=-0.030 Sum_probs=40.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChH
Q 040580 87 LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLE 166 (412)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 166 (412)
..+.+.|++++|...|+..++.. +.+...|..+..++.+.|++++|...|++..+.+ +-++..+..+...+...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 33444444444444444444432 2344444444444444444444444444444333 223334444444444444444
Q ss_pred HHHHHHHHHH
Q 040580 167 LMENTLKEMV 176 (412)
Q Consensus 167 ~a~~~~~~m~ 176 (412)
+|+..|++..
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=2e-05 Score=58.16 Aligned_cols=96 Identities=10% Similarity=-0.107 Sum_probs=80.5
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 125 (412)
.+..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35556677888999999999999998863 3378888889999999999999999999998875 557788899999999
Q ss_pred ccCCHHHHHHHHHHHhhc
Q 040580 126 RIGCFNEIISIIDQVSCR 143 (412)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~ 143 (412)
+.|++++|.+.|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988654
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.13 E-value=8.2e-05 Score=55.18 Aligned_cols=89 Identities=15% Similarity=0.041 Sum_probs=42.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCH---HHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC---HHhHHHHHHHHH
Q 040580 87 LCYANNGFVLEAQVVWEELLSSSFVLSV---QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL---PEVYSRAISCFG 160 (412)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~ 160 (412)
..+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|++..+.. +.+ +.++..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHH
Confidence 33444555555555555554432 1111 344445555555555555555555554432 122 334444555555
Q ss_pred hcCChHHHHHHHHHHHH
Q 040580 161 KQGQLELMENTLKEMVS 177 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~ 177 (412)
..|++++|...|++..+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.12 E-value=8.3e-06 Score=59.81 Aligned_cols=85 Identities=9% Similarity=-0.016 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHH
Q 040580 57 KKKPHLAHQLVNTVKSEGL--LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII 134 (412)
Q Consensus 57 ~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 134 (412)
.|++++|+..|++..+.+. +-+...+..+..++...|++++|...|++..+.. +-+..++..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 3445555555555554321 1123344445555555555555555555555443 333445555555555555555555
Q ss_pred HHHHHHhh
Q 040580 135 SIIDQVSC 142 (412)
Q Consensus 135 ~~~~~m~~ 142 (412)
+.|++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=1.4e-05 Score=74.42 Aligned_cols=117 Identities=10% Similarity=-0.063 Sum_probs=69.4
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHH
Q 040580 54 LGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEI 133 (412)
Q Consensus 54 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 133 (412)
+.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|...+++..+.. +.+..++..+..+|.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555555655555555542 2245666666666777777777777777776654 44566677777777777777777
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHH--HHhcCChHHHHHHHH
Q 040580 134 ISIIDQVSCRNADLLPEVYSRAISC--FGKQGQLELMENTLK 173 (412)
Q Consensus 134 ~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 173 (412)
.+.|++..+.. +-++..+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777766543 2333455555444 666677777777776
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=0.00011 Score=54.38 Aligned_cols=96 Identities=18% Similarity=-0.011 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHH
Q 040580 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDN---STLCALMLCYANNGFVLEAQVVWEELLSSSFVLS---VQVLSDL 120 (412)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l 120 (412)
+..+...+...|++++|.+.|++..+... .+. ..+..+..++.+.|++++|...|+...+.. +.+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 34456677788999999999999887532 122 477778888899999999999999988764 333 6778888
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcC
Q 040580 121 MDAYGRIGCFNEIISIIDQVSCRN 144 (412)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~m~~~~ 144 (412)
..++.+.|++++|...|+++....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 899999999999999999987654
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=2.2e-05 Score=60.64 Aligned_cols=95 Identities=13% Similarity=-0.072 Sum_probs=43.4
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCC-CCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc-CHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGL-LPD----NSTLCALMLCYANNGFVLEAQVVWEELLSS----SFVL-SVQ 115 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~ 115 (412)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...++...+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344555555555666666666655543210 011 123444555555555555555555554431 1000 123
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
++..+...+...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444555555555555555443
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=1.5e-05 Score=58.43 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=66.9
Q ss_pred hcCChHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 91 NNGFVLEAQVVWEELLSSS--FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168 (412)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 168 (412)
..|++++|...|++.++.+ -+.+..++..+..+|.+.|++++|.+.|++..+.+ +-++.++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4578888899998888764 24456788888888999999999999999888765 45577888888888899999999
Q ss_pred HHHHHHHHHC
Q 040580 169 ENTLKEMVSR 178 (412)
Q Consensus 169 ~~~~~~m~~~ 178 (412)
+..|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988887764
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.06 E-value=0.0048 Score=53.77 Aligned_cols=168 Identities=7% Similarity=-0.119 Sum_probs=119.0
Q ss_pred CCCChH-HHHHHHHHhhccC---hhhHHHHHHHHhcCCC----------hhHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 040580 25 HPKNGD-LARKIIRYRKQEG---FVDCASLVEDLGRKKK----------PHLAHQLVNTVKSEGLLPDNSTLCALMLCYA 90 (412)
Q Consensus 25 ~~~~~~-~A~~~~~~~~~~~---~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 90 (412)
+.|.+. +|...++.+...| ..+|+.=-..+...+. +++++.+++.+.... +-+..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 445544 7889888887644 4455543333322222 678899999998864 347888888777777
Q ss_pred hcC--ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc-----
Q 040580 91 NNG--FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC-FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ----- 162 (412)
Q Consensus 91 ~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----- 162 (412)
+.+ .+++++.+++.+.+.+ +.|..+|+--.-++...|. ++++++.++++.+.+ +-+..+|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccc
Confidence 777 4899999999999986 7788999988888888888 689999999999887 56777888766555544
Q ss_pred ---------CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 040580 163 ---------GQLELMENTLKEMVSRGFSVDSATGNAFIIYYSR 196 (412)
Q Consensus 163 ---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 196 (412)
+.++++++.+.+....... |...|+-+-..+.+
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGA 239 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHS
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3466777777777664322 55556544444443
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=0.00011 Score=57.30 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
..+|..+..+|.+.|++++|...+++..+.+ +.++..|..+..++...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3456666666666666666666666665544 344556666666666666666666666666553
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=1.3e-05 Score=74.65 Aligned_cols=124 Identities=8% Similarity=-0.116 Sum_probs=99.9
Q ss_pred hhccccccccccCCCChHHHHHHHHHhhc---cChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 040580 13 KFKRFNVPSHQTHPKNGDLARKIIRYRKQ---EGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCY 89 (412)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 89 (412)
...+..+...+.+.|++++|...+++..+ .+..+|..+..++.+.|++++|++.+++..+.. +-+..++..+..++
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 84 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34567778889999999999999998764 367889999999999999999999999999874 34678899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH--HHccCCHHHHHHHHH
Q 040580 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA--YGRIGCFNEIISIID 138 (412)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 138 (412)
.+.|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998864 3344555555555 888899999999988
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=7.8e-05 Score=69.01 Aligned_cols=124 Identities=12% Similarity=-0.073 Sum_probs=62.6
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC--------------HHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPD--------------NSTLCALMLCYANNGFVLEAQVVWEELLSS 108 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 108 (412)
....|..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..++..++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344566666777777777777777777765321110 344444555555555555555555555544
Q ss_pred CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 109 SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168 (412)
Q Consensus 109 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 168 (412)
. +.+...|..+..+|...|++++|...|++..+.. +-++..+..+...+.+.++.+++
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 3344455555555555555555555555554332 22223444444444444444443
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=5.5e-05 Score=58.33 Aligned_cols=133 Identities=11% Similarity=-0.045 Sum_probs=83.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC-CC----H
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFV-LS----VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNAD-LL----P 149 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~ 149 (412)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666777778888888888888777653100 11 246777778888888888888888776442100 11 2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040580 150 EVYSRAISCFGKQGQLELMENTLKEMVSR----GFSV-DSATGNAFIIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 150 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 212 (412)
.++..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|...+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 25666677777778888887777766432 1111 123455566666667777777776666543
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=9.6e-05 Score=66.29 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=47.5
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcC--------------C-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEG--------------L-LPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSF 110 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------------~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 110 (412)
.+..+...+.+.|++++|++.|++..+.- . +.+...|..+..++.+.|++++|...+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 46666677777788888887777766510 0 1122334444444444444444444444444432
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 040580 111 VLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 111 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
+.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22334444444444444444444444444433
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.94 E-value=4.8e-05 Score=67.40 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 040580 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123 (412)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 123 (412)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence 345667777888888999999999887764 344331 11111222211111 0 1245555555
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 124 YGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
|.+.|++++|...+++..+.+ +-++..|..+..+|...|++++|+..|++..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555443 23344555555555555555555555555544
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.93 E-value=0.00018 Score=66.62 Aligned_cols=122 Identities=9% Similarity=0.087 Sum_probs=68.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---------------HHHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLS---------------VQVLSDLMDAYGRIGCFNEIISIIDQVSCR 143 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 143 (412)
...+..+...+.+.|++++|...|++.++.. +.+ ..+|..+..+|.+.|++++|+..+++..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4456667777778888888888888777642 112 355555556666666666666666655544
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 040580 144 NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSV-DSATGNAFIIYYSRFGSLTEME 204 (412)
Q Consensus 144 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 204 (412)
+ +.++..|..+..+|...|++++|+..|++..+. .| +...+..+..++.+.++.+++.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 334445555555555566666666665555543 22 2334444444444445444433
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=0.00017 Score=64.70 Aligned_cols=137 Identities=7% Similarity=-0.145 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFG 160 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 160 (412)
.+..+...+.+.|++++|...|++.++.- ++.. .... .++..... +.++.+|..+..++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45666677777888888888887776520 0000 0000 00000000 112234555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHH
Q 040580 161 KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 239 (412)
+.|++++|+..+++..+... .+...+..+..++...|++++|...|+...+.. +.+...+..+...+...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554321 133444445555555555555555555554432 123444444455555555544443
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.90 E-value=0.00019 Score=55.78 Aligned_cols=99 Identities=14% Similarity=0.006 Sum_probs=81.0
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhc-------CC----------CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040580 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSE-------GL----------LPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107 (412)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (412)
..+......+.+.|++++|+..|.+.... +- +.+...|..+..++.+.|++++|...++..++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44666777888889999999988887764 00 11345788888899999999999999999998
Q ss_pred CCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 040580 108 SSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN 144 (412)
Q Consensus 108 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 144 (412)
.+ +.+...|..+..+|...|++++|...|++....+
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 75 6678899999999999999999999999987764
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.79 E-value=0.00018 Score=66.72 Aligned_cols=123 Identities=12% Similarity=0.075 Sum_probs=73.0
Q ss_pred HhcCChHHHHHHHHHHHhC-----C--CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhc---CCCC-CHH---hHHHH
Q 040580 90 ANNGFVLEAQVVWEELLSS-----S--FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR---NADL-LPE---VYSRA 155 (412)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~-~~~---~~~~l 155 (412)
...|++++|+.++++.++. | .+....+++.|..+|...|++++|..++++..+. -.++ .|. +++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3567777777777665541 1 1123456777777777777777777777665321 1111 222 66777
Q ss_pred HHHHHhcCChHHHHHHHHHHHH-----CCCC-CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040580 156 ISCFGKQGQLELMENTLKEMVS-----RGFS-VD-SATGNAFIIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 156 i~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 212 (412)
...|...|++++|+.++++..+ .|.. |+ ..+.+.+-.++...+.+++|+.++..+++
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766543 1221 22 23344555666667777777777777765
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.00073 Score=50.94 Aligned_cols=110 Identities=10% Similarity=-0.173 Sum_probs=61.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc----cCCHHHHH
Q 040580 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR----IGCFNEII 134 (412)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 134 (412)
++++|++.|++..+.| .|+.. |...|...+.+++|.+.|+...+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666665555 22222 4444444455556666666666543 44555555555555 56666666
Q ss_pred HHHHHHhhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 040580 135 SIIDQVSCRNADLLPEVYSRAISCFGK----QGQLELMENTLKEMVSRG 179 (412)
Q Consensus 135 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 179 (412)
+.|++..+.+ ++..+..|-..|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 24455555555555 566666666666666554
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.71 E-value=0.0096 Score=56.47 Aligned_cols=174 Identities=6% Similarity=-0.087 Sum_probs=129.4
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 040580 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF----------VLEAQVVWEELLSSSFVLSVQVLSDLMDAYG 125 (412)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 125 (412)
.....++|++.++++.... +-+..+|+.--.++...++ ++++...++.+.+.. +-+..+|+.-.-++.
T Consensus 41 ~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 41 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3344578899999998864 2245667766666666666 899999999999876 667888988888888
Q ss_pred ccC--CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-----
Q 040580 126 RIG--CFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQG-QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF----- 197 (412)
Q Consensus 126 ~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----- 197 (412)
+.+ +++++++.++++.+.+ +-+..+|+.--..+.+.| .++++++.++++.+..+. +...|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccc
Confidence 888 7799999999998877 556778888777777888 889999999988876543 667777666665553
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 040580 198 ---------GSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234 (412)
Q Consensus 198 ---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (412)
+.++++.+.+....... +-+...|+-+-..+.+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 45677888887777654 2356677777666666555
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.00017 Score=66.95 Aligned_cols=121 Identities=8% Similarity=-0.123 Sum_probs=85.4
Q ss_pred CChhHHHHHHHHHHhc---CCCC----CHHhHHHHHHHHHhcCChHHHHHHHHHHHh-----CC--CCcCHHHHHHHHHH
Q 040580 58 KKPHLAHQLVNTVKSE---GLLP----DNSTLCALMLCYANNGFVLEAQVVWEELLS-----SS--FVLSVQVLSDLMDA 123 (412)
Q Consensus 58 ~~~~~a~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~--~~~~~~~~~~li~~ 123 (412)
|++++|..++++..+. -+.| ...+++.|..+|...|++++|..++++.++ .| .+-...+++.|...
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 402 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLT 402 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6778888887776542 1122 245688888888889999988888887764 22 22235678888899
Q ss_pred HHccCCHHHHHHHHHHHhh---cCCCCC-H---HhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 124 YGRIGCFNEIISIIDQVSC---RNADLL-P---EVYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~---~~~~~~-~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
|...|++++|+.++++..+ .-+.++ | .+.+.+-.++...+.+++|+.++..+++.
T Consensus 403 ~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 403 NWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888886643 112232 2 25667777788888899999999888763
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=0.00021 Score=63.22 Aligned_cols=148 Identities=8% Similarity=-0.002 Sum_probs=81.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (412)
..+..+...+.+.|++++|...|+..++. .|+... +...++.+++...+. ...|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34555666677778888888888877664 233321 222333333332221 13788899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcccHHHH
Q 040580 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY-LKERKFFML 238 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a 238 (412)
.+.|++++|+..+++..+... .+...+..+..++...|++++|...|+...+... -+...+..+.... ...+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987532 2567888899999999999999999999876531 2344555555442 334566777
Q ss_pred HHHHHHHhcC
Q 040580 239 GEFLRDVGLG 248 (412)
Q Consensus 239 ~~~~~~~~~~ 248 (412)
.+.+..+-..
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888776433
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.66 E-value=0.00089 Score=51.26 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-c-----C-----HHHHHHHHHHHHccCCHHHHHHHHHHHhhc-----CCC
Q 040580 83 CALMLCYANNGFVLEAQVVWEELLSSSFV-L-----S-----VQVLSDLMDAYGRIGCFNEIISIIDQVSCR-----NAD 146 (412)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-----~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~ 146 (412)
......+.+.|++++|...|+..++.... | + ...|+.+..++.+.|++++|+..+++..+. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444455556666666666655553211 0 1 225566666666666666666666555443 001
Q ss_pred C-CHHhH----HHHHHHHHhcCChHHHHHHHHHHH
Q 040580 147 L-LPEVY----SRAISCFGKQGQLELMENTLKEMV 176 (412)
Q Consensus 147 ~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~ 176 (412)
| ++..| ...-.++...|++++|+..|++..
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 12244 445555555555555555555543
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.65 E-value=0.0007 Score=46.29 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
.+..+...+...|++++|...|+...+.. +.+..++..+..++.+.|++++|.+.|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444444555555555555444432 22344444444555555555555555554443
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.65 E-value=0.00078 Score=51.60 Aligned_cols=96 Identities=13% Similarity=-0.125 Sum_probs=78.0
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCC------CH-----HhHHHHHHHHHhcCChHHHHHHHHHHHhC------
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLP------DN-----STLCALMLCYANNGFVLEAQVVWEELLSS------ 108 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------ 108 (412)
.+......+.+.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 45556667778899999999999988753210 22 38888999999999999999999999885
Q ss_pred -CCCcCHHHH----HHHHHHHHccCCHHHHHHHHHHHhh
Q 040580 109 -SFVLSVQVL----SDLMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 109 -~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
+ +-+...| .....++...|++++|+..|++..+
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 3456788 9999999999999999999998865
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00028 Score=50.55 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
..+..+...+...|++++|...|+...+.. +.+...+..+..++.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444444555555555555555544432 33444455555555555555555555555443
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.63 E-value=0.0094 Score=56.53 Aligned_cols=174 Identities=4% Similarity=-0.098 Sum_probs=130.5
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC----------HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc
Q 040580 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC----------FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 162 (412)
..-++|.+.++.+.+.. +-+..+|+.--.++.+.|+ ++++++.++++.+.+ +-+..+|+.--..+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34567899999999875 5567788887777777777 899999999998776 55667888888888888
Q ss_pred C--ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------
Q 040580 163 G--QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG-SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE------- 232 (412)
Q Consensus 163 g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 232 (412)
| +++++++.++++.+.... +...|+.-...+.+.| .++++.+.++.+.+.. +-+...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 8 779999999999987543 7788888777888888 8899999998888765 33677777776666553
Q ss_pred -------ccHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHhcCCChHH
Q 040580 233 -------RKFFMLGEFLRDVG-LGRKDLGNLLWNLLLLSYAGNFKMKS 272 (412)
Q Consensus 233 -------~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~ 272 (412)
+.++++.+.+.+.- ..+. |..+|+.+-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~--~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN--DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS--CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC--CccHHHHHHHHHhcCCCccc
Confidence 55677777776543 3333 34777777777777666433
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.62 E-value=0.00055 Score=49.56 Aligned_cols=61 Identities=11% Similarity=-0.160 Sum_probs=24.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 79 NSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
...+..+...+...|++++|...|+...+.. +.+...|..+..++...|++++|...|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444444444444444444444444332 223333444444444444444444444433
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.61 E-value=0.0021 Score=48.32 Aligned_cols=110 Identities=5% Similarity=-0.117 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh----cCChHHHH
Q 040580 94 FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK----QGQLELME 169 (412)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 169 (412)
++++|...|+...+.| .|+.. |...|...+.+++|.+.|++..+.+ ++..+..|-..|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555544 22222 4444444444555555555554432 23444444444444 45555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 040580 170 NTLKEMVSRGFSVDSATGNAFIIYYSR----FGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 170 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 214 (412)
..|++..+.| +...+..|-..|.. .++.++|...|+...+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554443 23334444444444 455555555555555444
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.54 E-value=0.00085 Score=48.52 Aligned_cols=80 Identities=9% Similarity=0.035 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMV 176 (412)
Q Consensus 97 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 176 (412)
.+...|+...+.. +.+...+..+...+.+.|++++|.+.|++..+.+ +.++..|..+...+...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566677776654 4567778888888888888888888888877654 4456677778888888888888888888776
Q ss_pred HC
Q 040580 177 SR 178 (412)
Q Consensus 177 ~~ 178 (412)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00051 Score=49.10 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 113 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
+...+..+...+.+.|++++|.+.|++..+.. +.++..|..+..++.+.|++++|+..+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45667777788888888888888888877654 456667777888888888888888888887764
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.48 E-value=0.0013 Score=44.89 Aligned_cols=83 Identities=12% Similarity=-0.010 Sum_probs=67.3
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 040580 43 GFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMD 122 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 122 (412)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34567788888999999999999999998764 3467888899999999999999999999998865 456777777776
Q ss_pred HHHcc
Q 040580 123 AYGRI 127 (412)
Q Consensus 123 ~~~~~ 127 (412)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.43 E-value=0.00053 Score=52.41 Aligned_cols=96 Identities=10% Similarity=0.012 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC----------HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc
Q 040580 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC----------FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ 162 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 162 (412)
+.+++|...++...+.. +.+...|+.+..++.+.++ +++|+..|++..+.+ +-.+.+|..+-.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 34455555555555443 3345555555555554443 346666666665544 33444666666666554
Q ss_pred -----------CChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 040580 163 -----------GQLELMENTLKEMVSRGFSVDSATGNAFII 192 (412)
Q Consensus 163 -----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 192 (412)
|++++|+..|++..+. .|+...|...+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3677777777776663 566555544444
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.23 E-value=0.0023 Score=44.93 Aligned_cols=61 Identities=5% Similarity=-0.034 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 114 VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175 (412)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 175 (412)
...+..+..+|.+.|++++|.+.|++..+.+ +-++..|..+..+|...|++++|...|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444444444332 222334444444444444444444444433
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.14 E-value=0.0026 Score=44.63 Aligned_cols=64 Identities=22% Similarity=0.118 Sum_probs=41.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 040580 78 DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
+...+..+...+.+.|++++|...|+..++.+ +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666667777777777777666654 33455666677777777777777776666543
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.07 E-value=0.0014 Score=50.05 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=57.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 040580 58 KKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF----------VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI 127 (412)
Q Consensus 58 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 127 (412)
+.+++|.+.++...+.. +-+...|..+..++...++ +++|+..|++.++.+ +-+..+|..+..+|.+.
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 34555666666655543 2255555555555555544 347777777777654 44566777777777665
Q ss_pred C-----------CHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 040580 128 G-----------CFNEIISIIDQVSCRNADLLPEVYSRAIS 157 (412)
Q Consensus 128 ~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 157 (412)
| ++++|.+.|++..+.+ |+...|...+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 3 7788888888776643 44344444433
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.048 Score=54.16 Aligned_cols=152 Identities=8% Similarity=0.034 Sum_probs=92.9
Q ss_pred HHhcCCChhHHHH-HHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHH
Q 040580 53 DLGRKKKPHLAHQ-LVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131 (412)
Q Consensus 53 ~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 131 (412)
.....+++++|.+ ++.. + |+......++..+.+.|.++.|.++.+. |. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHH
Confidence 3345677888766 4421 1 1122336777778888888888766532 11 1133455678888
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040580 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLK 211 (412)
Q Consensus 132 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 211 (412)
.|.++.+.+ .++..|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+....+-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 888876543 3456888888888899999998888887753 4445555555777776666555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 040580 212 RSRHLIDKEGIRAVSFTYLKERKFFMLGEFLR 243 (412)
Q Consensus 212 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 243 (412)
..| -++....+|.+.|++++|.+++.
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHHH
Confidence 443 12333334445555555555444
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.95 E-value=0.016 Score=57.52 Aligned_cols=151 Identities=11% Similarity=-0.053 Sum_probs=102.2
Q ss_pred CCCChHHHHH-HHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 040580 25 HPKNGDLARK-IIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103 (412)
Q Consensus 25 ~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 103 (412)
..+++++|.+ ++..++ +......++..+.+.|.++.|.++.+.-. . -.......|+++.|.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~----~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD--------Q----KFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------H----HHHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc--------h----heehhhhcCCHHHHHHHHH
Confidence 3566777766 543333 02233778888888999999987763221 1 1334567899999998864
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040580 104 ELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVD 183 (412)
Q Consensus 104 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 183 (412)
.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+....+-+.....|-
T Consensus 677 ~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--- 738 (814)
T 3mkq_A 677 DE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK--- 738 (814)
T ss_dssp TC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred hh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---
Confidence 33 4678999999999999999999999998843 45556666667777776666655555432
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040580 184 SATGNAFIIYYSRFGSLTEMETAYGRL 210 (412)
Q Consensus 184 ~~~~~~li~~~~~~g~~~~a~~~~~~~ 210 (412)
++....++.+.|++++|.+++.++
T Consensus 739 ---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444566677777777776554
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.71 E-value=0.01 Score=41.13 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=27.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 040580 88 CYANNGFVLEAQVVWEELLSSSFVLSVQ-VLSDLMDAYGRIGCFNEIISIIDQVSCR 143 (412)
Q Consensus 88 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 143 (412)
.+.+.|++++|...|+...+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555442 23334 5555555555555555555555555443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.66 E-value=0.014 Score=53.24 Aligned_cols=84 Identities=8% Similarity=-0.025 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHhC-----C--CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhc---CCC-CCHH---hHHHHHHH
Q 040580 93 GFVLEAQVVWEELLSS-----S--FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCR---NAD-LLPE---VYSRAISC 158 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~-~~~~---~~~~li~~ 158 (412)
|++++|+.++++.++. | .+....+++.|..+|...|++++|+.++++..+. -.+ -.|+ +++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666655431 1 1112356667777777777777777766655321 111 1222 66677777
Q ss_pred HHhcCChHHHHHHHHHHH
Q 040580 159 FGKQGQLELMENTLKEMV 176 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~ 176 (412)
|...|++++|+.++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 777777777777776654
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.66 E-value=0.042 Score=48.28 Aligned_cols=142 Identities=12% Similarity=-0.013 Sum_probs=81.2
Q ss_pred CCCHHhHHHHHHHHHh--cC---ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc---cC--CHHHH---HHHHHHHhh
Q 040580 76 LPDNSTLCALMLCYAN--NG---FVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGR---IG--CFNEI---ISIIDQVSC 142 (412)
Q Consensus 76 ~p~~~~~~~ll~~~~~--~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~~--~~~~a---~~~~~~m~~ 142 (412)
+.+...|...+++... .+ +..+|..+|++.++.. |-....|..+.-+|.- .+ ..... .+.++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4566677776655432 22 3467778888887764 3334445444433321 00 10111 111221111
Q ss_pred -cCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 040580 143 -RNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG 221 (412)
Q Consensus 143 -~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 221 (412)
...+.++.+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++....+ |...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcCh
Confidence 1124455577776666666688888888888877764 666666666777777888888888887776653 45444
Q ss_pred H
Q 040580 222 I 222 (412)
Q Consensus 222 ~ 222 (412)
|
T Consensus 346 ~ 346 (372)
T 3ly7_A 346 L 346 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.65 E-value=0.0081 Score=54.70 Aligned_cols=85 Identities=9% Similarity=-0.000 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHhhc---CCCCC-H---HhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-hHHHHHHHHH
Q 040580 128 GCFNEIISIIDQVSCR---NADLL-P---EVYSRAISCFGKQGQLELMENTLKEMVSR-----G-FSVD-SATGNAFIIY 193 (412)
Q Consensus 128 ~~~~~a~~~~~~m~~~---~~~~~-~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~li~~ 193 (412)
|++++|+.++++..+. -+.++ | .+++.|...|...|++++|+.++++..+- | -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6888888888876542 22232 3 38899999999999999999999987542 2 2343 3678899999
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 040580 194 YSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 194 ~~~~g~~~~a~~~~~~~~~ 212 (412)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999988765
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.57 E-value=0.018 Score=52.43 Aligned_cols=86 Identities=15% Similarity=0.038 Sum_probs=48.4
Q ss_pred hcCChHHHHHHHHHHHhCC---CCc----CHHHHHHHHHHHHccCCHHHHHHHHHHHhhc---CC-CCCHH---hHHHHH
Q 040580 91 NNGFVLEAQVVWEELLSSS---FVL----SVQVLSDLMDAYGRIGCFNEIISIIDQVSCR---NA-DLLPE---VYSRAI 156 (412)
Q Consensus 91 ~~~~~~~a~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~-~~~~~---~~~~li 156 (412)
+.|++++|+.++++.++.. +.| ...+++.|..+|...|++++|+.++++.... -. +-.|. +++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4556666666666665421 111 2356666666666666666666666655321 11 11222 566666
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 040580 157 SCFGKQGQLELMENTLKEMV 176 (412)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~m~ 176 (412)
..|...|++++|+.++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 66777777777766666543
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.55 E-value=0.019 Score=52.31 Aligned_cols=92 Identities=8% Similarity=-0.067 Sum_probs=70.9
Q ss_pred HHHHHccCCHHHHHHHHHHHhhcC---CCCC-H---HhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-hHH
Q 040580 121 MDAYGRIGCFNEIISIIDQVSCRN---ADLL-P---EVYSRAISCFGKQGQLELMENTLKEMVSR-----G-FSVD-SAT 186 (412)
Q Consensus 121 i~~~~~~~~~~~a~~~~~~m~~~~---~~~~-~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~~ 186 (412)
+..+.+.|++++|+.++++..+.. +.++ | .+++.+...|...|++++|+.++++...- | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444567789999999999886531 2222 2 38899999999999999999999987542 2 2333 367
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040580 187 GNAFIIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 187 ~~~li~~~~~~g~~~~a~~~~~~~~~ 212 (412)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999988764
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.53 E-value=0.056 Score=47.47 Aligned_cols=72 Identities=7% Similarity=-0.039 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHH
Q 040580 253 GNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYG 328 (412)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 328 (412)
+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++... +.|...||.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 34777777666666788888888888888764 7777777777777888888888888877766 456666654
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.17 Score=39.14 Aligned_cols=96 Identities=13% Similarity=0.055 Sum_probs=43.3
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 040580 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135 (412)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 135 (412)
+.|+++.|.++.+++ -+...|..|.....+.|+++-|++.|..... +..+.-.|.-.|+.+...+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 345555555554443 1344555555555555555555555544432 2333333444444444443
Q ss_pred HHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 040580 136 IIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTL 172 (412)
Q Consensus 136 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 172 (412)
+-+....+| -++.....+.-.|+++++.++|
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 333333332 2344444444445555555544
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.16 E-value=0.04 Score=38.01 Aligned_cols=58 Identities=9% Similarity=0.120 Sum_probs=40.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLPE-VYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
....+.+.|++++|.+.|++..+.. +.++. .+..+...+...|++++|+..|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445666777777777777776654 44556 6777777777777777777777777664
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.16 E-value=0.088 Score=39.70 Aligned_cols=80 Identities=6% Similarity=-0.032 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC---CHHHHHHHHHHHhhcCCCC--CHHhHHHHHHHHHhcCChHHHHH
Q 040580 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIG---CFNEIISIIDQVSCRNADL--LPEVYSRAISCFGKQGQLELMEN 170 (412)
Q Consensus 96 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 170 (412)
..+.+-|.+..+.| +++..+...+.-++++++ +++++..+|++..+.+ .| ..+.+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 33444455544444 355555555566666655 4446666666665543 12 23344444455566666666666
Q ss_pred HHHHHHH
Q 040580 171 TLKEMVS 177 (412)
Q Consensus 171 ~~~~m~~ 177 (412)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666665
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.13 E-value=0.055 Score=37.17 Aligned_cols=64 Identities=16% Similarity=-0.048 Sum_probs=29.9
Q ss_pred CHHhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 040580 78 DNSTLCALMLCYANNGF---VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
|+..+..+..++...++ .++|..++++.++.+ +-+......+...+.+.|++++|...|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433222 345555555555443 33444444455555555555555555555544
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.99 E-value=0.11 Score=35.69 Aligned_cols=67 Identities=7% Similarity=-0.055 Sum_probs=44.8
Q ss_pred CcCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 111 VLSVQVLSDLMDAYGRIGC---FNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 111 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
+.|...+..+..++...++ .++|..+|++..+.+ +-++.....+-..+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556666666666654443 577777777776655 445556666677777777777777777777765
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.71 E-value=0.16 Score=35.56 Aligned_cols=61 Identities=15% Similarity=0.056 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSS------FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
.+..|...+.+.++++.|...|+...+.- -.+...++..|..++.+.|+++.|...+++..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33344444444444444444444443310 01223444444444444444444444444443
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.57 Score=36.28 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=9.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 040580 151 VYSRAISCFGKQGQLELMENTLK 173 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~ 173 (412)
.|..|-......|+++-|.+.|.
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 34444444444444444444333
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.51 E-value=0.48 Score=34.68 Aligned_cols=46 Identities=7% Similarity=-0.075 Sum_probs=21.3
Q ss_pred CCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 57 KKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105 (412)
Q Consensus 57 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 105 (412)
.|.+++..++..+.... .+..-||-+|.-....-+-+-..++++.+
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I 65 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI 65 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH
Confidence 45556666666555442 13444444444444444444444444333
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.51 E-value=0.2 Score=37.78 Aligned_cols=83 Identities=8% Similarity=0.017 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHhcCCChHHHHHHHH
Q 040580 203 METAYGRLKRSRHLIDKEGIRAVSFTYLKER---KFFMLGEFLRDVGLGR-KDLGNLLWNLLLLSYAGNFKMKSLQREFM 278 (412)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 278 (412)
+++-|.+..+.|. ++..+...+..++++++ +++++..++++.-... +.-+...+-.+.-+|.+.|++++|.+.++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3344443333332 34444444444444444 3344444444432222 10112344445555666666666666666
Q ss_pred HHHHcCCCCc
Q 040580 279 RMSEAGFHPD 288 (412)
Q Consensus 279 ~m~~~~~~p~ 288 (412)
.+.+. .|+
T Consensus 96 ~lL~i--eP~ 103 (152)
T 1pc2_A 96 GLLQT--EPQ 103 (152)
T ss_dssp HHHHH--CTT
T ss_pred HHHhc--CCC
Confidence 66654 454
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.47 E-value=0.49 Score=34.59 Aligned_cols=147 Identities=10% Similarity=-0.001 Sum_probs=88.1
Q ss_pred HHHHHHH--HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 040580 82 LCALMLC--YANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCF 159 (412)
Q Consensus 82 ~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 159 (412)
...|+.+ ..-.|.+++..++..+..+ +.+..-||.+|.-....-+-+-..++++.+-.. +..
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDi------------ 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL------------ 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh-cCc------------
Confidence 3344443 3456888888888888876 345666777777777777777777777766321 111
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHH
Q 040580 160 GKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLG 239 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 239 (412)
...|++..+...+-.+- .+...+...+......|+.++..+++..+.. +.+|++...-.+..||.+.|+..++.
T Consensus 72 s~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GGCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHH
Confidence 12233333333332221 2444556666667777777777777766543 33566677777777777777777777
Q ss_pred HHHHHHhcCCC
Q 040580 240 EFLRDVGLGRK 250 (412)
Q Consensus 240 ~~~~~~~~~~~ 250 (412)
+++.+.-..+.
T Consensus 146 eLl~~AC~kG~ 156 (172)
T 1wy6_A 146 TLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhhh
Confidence 77776555444
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.30 E-value=0.17 Score=35.46 Aligned_cols=66 Identities=15% Similarity=0.033 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHhcCCChhHHHHHHHHHHhcC------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040580 44 FVDCASLVEDLGRKKKPHLAHQLVNTVKSEG------LLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSS 109 (412)
Q Consensus 44 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 109 (412)
..-+-.+...+.+.|+++.|...|+...+.- -.+....+..|..++.+.|+++.|...++...+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3445677888889999999999998876531 13456788899999999999999999999998863
No 229
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.93 E-value=2.1 Score=38.94 Aligned_cols=50 Identities=10% Similarity=-0.002 Sum_probs=28.9
Q ss_pred CChhHHHHHHHHHHhc-----CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040580 58 KKPHLAHQLVNTVKSE-----GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLS 107 (412)
Q Consensus 58 ~~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 107 (412)
|+++.|++.+-.+.+. +..-+......++..|...++++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5566666665444321 2233455566667777777777766666655543
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.77 E-value=0.83 Score=34.14 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=17.1
Q ss_pred ChhhHHHHHHHHhcCCCh------hHHHHHHHHHHh
Q 040580 43 GFVDCASLVEDLGRKKKP------HLAHQLVNTVKS 72 (412)
Q Consensus 43 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~ 72 (412)
|..+|-..+...-+.|++ ++..++|++...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 555555555555555665 555555555554
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.67 E-value=0.37 Score=40.63 Aligned_cols=93 Identities=11% Similarity=0.012 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc-CCh
Q 040580 95 VLEAQVVWEELLSSSFVLS---VQVLSDLMDAYGRI-----GCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQ-GQL 165 (412)
Q Consensus 95 ~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 165 (412)
...|...+++.++. .|+ ...|..|...|.+. |+.++|.+.|++..+.+-.-++.++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45667777777775 354 56788888888884 89999999999887765322467788888888874 889
Q ss_pred HHHHHHHHHHHHCCCC--CChHHHHH
Q 040580 166 ELMENTLKEMVSRGFS--VDSATGNA 189 (412)
Q Consensus 166 ~~a~~~~~~m~~~g~~--p~~~~~~~ 189 (412)
+++.+.+++..+.... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999988887665 55444433
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.53 E-value=0.37 Score=35.99 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=20.5
Q ss_pred CHHhHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCcC
Q 040580 78 DNSTLCALMLCYANNGFV------LEAQVVWEELLSSSFVLS 113 (412)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~~ 113 (412)
|..+|-..+....+.|++ ++..++|++.... ++|+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 555666666666656666 6666666666553 3443
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.98 E-value=0.62 Score=39.30 Aligned_cols=85 Identities=15% Similarity=0.091 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc-CCH
Q 040580 60 PHLAHQLVNTVKSEGLLPD---NSTLCALMLCYANN-----GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRI-GCF 130 (412)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~ 130 (412)
...|..++++..+. .|+ ...|..|...|.+. |+.++|.+.|++.++.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46677777777775 566 66899999999995 99999999999999965222478888899999885 999
Q ss_pred HHHHHHHHHHhhcCCC
Q 040580 131 NEIISIIDQVSCRNAD 146 (412)
Q Consensus 131 ~~a~~~~~~m~~~~~~ 146 (412)
+.+.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999876544
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.62 E-value=0.65 Score=33.64 Aligned_cols=80 Identities=6% Similarity=-0.019 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHH---HHHHHHHHhhcCCCC--CHHhHHHHHHHHHhcCChHHHHH
Q 040580 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE---IISIIDQVSCRNADL--LPEVYSRAISCFGKQGQLELMEN 170 (412)
Q Consensus 96 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 170 (412)
..+.+-|......| .|+..+--.+.-++.++.+... +..+++++...+ .| ..+..-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33344444444333 2444444445555555554443 555555554332 11 11133334445555555555555
Q ss_pred HHHHHHH
Q 040580 171 TLKEMVS 177 (412)
Q Consensus 171 ~~~~m~~ 177 (412)
.++.+.+
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
No 235
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.29 E-value=2.4 Score=43.85 Aligned_cols=211 Identities=10% Similarity=-0.010 Sum_probs=133.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcC----CC--------------
Q 040580 189 AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLG----RK-------------- 250 (412)
Q Consensus 189 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-------------- 250 (412)
.++..+...+..+.+.++.... +.++...-.+..+|...|++++|.+.|.+.... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3555566666666666554332 234554455666788899999999999874111 00
Q ss_pred ----CcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCC-C-CcH--hHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC
Q 040580 251 ----DLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGF-H-PDL--TTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGP 322 (412)
Q Consensus 251 ----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~-p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 322 (412)
..-..-|..++..+-+.|.++.+.++-+...+..- . ++. ..|..+++++...|++++|...+-.+.+...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 00123477888889999999999988776664321 1 111 25788999999999999999999888765554
Q ss_pred CHhhHHHHHHHHHhccccch------------HHHHHHhc-cC--CCCCCcccHHHHHHHHhc-CCcccHHHHHHHhcc-
Q 040580 323 DLVTYGCVVDAYLDKRLGRN------------LDFGLSKM-NL--DDSPVVSTDPYVFEAFGK-GDFHSSSEAFLEFKR- 385 (412)
Q Consensus 323 ~~~~~~~li~~~~~~~~~~~------------a~~~~~~m-~~--~~~p~~~~~~~li~~~~~-~~~~~a~~~~~~~~~- 385 (412)
...+..||..+|..+..+. +.+++..- +. ........|..|..-+.. |++..|.+++.+-..
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 5677788888887655443 34444332 11 111112235666665544 999999888865311
Q ss_pred --------------CchHHHHHHHHHHHHcCccccc
Q 040580 386 --------------QRKWTYRKLIAVYLKKQLRRNQ 407 (412)
Q Consensus 386 --------------~~~~~~~~l~~~~~~~g~~~~a 407 (412)
+-...|...++++.-.. .+.|
T Consensus 1050 L~~~~~~~~~~~~~~q~~~yL~~INaLslvd-~~~a 1084 (1139)
T 4fhn_B 1050 YISTTELIGKKERTFIIEHYLIVLNTLELLP-KEDT 1084 (1139)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHSC-SSCC
T ss_pred hhhccccccchhHHHHHHHHHHHHHHHhcCC-hhhC
Confidence 12456888888887763 3444
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.83 E-value=0.59 Score=41.79 Aligned_cols=127 Identities=11% Similarity=-0.042 Sum_probs=70.6
Q ss_pred CHHhHHHHHHHHH---hcCChHHHHHHHHHHHhC--C-CCcCHHHHHHHHHHHHccCCHH-HHHHHHHHHhhcCCCCCHH
Q 040580 78 DNSTLCALMLCYA---NNGFVLEAQVVWEELLSS--S-FVLSVQVLSDLMDAYGRIGCFN-EIISIIDQVSCRNADLLPE 150 (412)
Q Consensus 78 ~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~--~-~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~ 150 (412)
|...|..++.... ..|+.+.+...++..... | +-++.. ...+- ....-+++... .
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~~-------~ 172 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDKV-------L 172 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHHH-------H
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHHH-------H
Confidence 4445555554432 357888888888887763 3 111110 01111 11112222211 2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKR-----SRHLIDKEGIR 223 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 223 (412)
+...++..+...|++++++..+..+.... +-+...+..+|.++.+.|+..+|.+.|+.+.+ .|+.|++.+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34455666667777777777777666542 12556677777777777777777777766543 37777766543
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.77 E-value=0.68 Score=31.75 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=17.1
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 102 WEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 102 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
++.+...++.|+..+..+.+++|-+.+++..|.++|+-++
T Consensus 33 lN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 33 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444443
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.64 E-value=1.4 Score=31.95 Aligned_cols=25 Identities=4% Similarity=-0.077 Sum_probs=14.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 259 LLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
.|.-++.+.|++++|.+.++.+.+.
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3445566666666666666666544
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.55 E-value=6 Score=35.98 Aligned_cols=185 Identities=10% Similarity=0.035 Sum_probs=116.5
Q ss_pred CCChHHHHHHHHHhhcc---------ChhhHHHHHHHHhcCCChhHHHHHHHHHHh-cCCCCCHHhHHHHHHHH----Hh
Q 040580 26 PKNGDLARKIIRYRKQE---------GFVDCASLVEDLGRKKKPHLAHQLVNTVKS-EGLLPDNSTLCALMLCY----AN 91 (412)
Q Consensus 26 ~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~----~~ 91 (412)
.|+++.|...+-.+.+. .......++..|...|+++...+.+..+.. +|..+. .-..+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhc
Confidence 36788888777555431 344577899999999999999888876654 343322 223333333 33
Q ss_pred cCChHHH--HHHHHHHHh--CC-CCc---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCH-----HhHHHHHHH
Q 040580 92 NGFVLEA--QVVWEELLS--SS-FVL---SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP-----EVYSRAISC 158 (412)
Q Consensus 92 ~~~~~~a--~~~~~~m~~--~~-~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~ 158 (412)
....+.. ..+.+.+.. .| +-. .......|...+...|++.+|.+++.++...-...+. ..+..-++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3333321 122221111 11 111 2345567888899999999999999988643222221 266777888
Q ss_pred HHhcCChHHHHHHHHHHHH----CCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040580 159 FGKQGQLELMENTLKEMVS----RGFSVDS--ATGNAFIIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~----~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 212 (412)
|...+++.+|..++++... ....|+. ..+...+..+...+++.+|.+.|.++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999988643 2222322 3456677777888999888888777654
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.41 E-value=0.45 Score=32.62 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHH
Q 040580 270 MKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM 315 (412)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 315 (412)
.-++.+-++.+....+.|+.......+.||.+.+++..|.++++-.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444444444445555555555555555555555555555444
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.96 E-value=1.1 Score=43.58 Aligned_cols=125 Identities=11% Similarity=0.072 Sum_probs=80.0
Q ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHhcCCCCCHHhH--HHHHHHHHhcCC-hHHHHHHHHHHHhC------CCCc-C---
Q 040580 48 ASLVEDLGRKKK-PHLAHQLVNTVKSEGLLPDNSTL--CALMLCYANNGF-VLEAQVVWEELLSS------SFVL-S--- 113 (412)
Q Consensus 48 ~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~-~~~a~~~~~~m~~~------~~~~-~--- 113 (412)
..+++.+...++ .+.|..+|+++.... |...++ ..++..+.+.++ --+|.++..+..+. ..++ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 455666666666 578999999998863 433332 233333333332 22344444443321 1111 1
Q ss_pred -------HHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 114 -------VQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEM 175 (412)
Q Consensus 114 -------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 175 (412)
....+.=.+.|...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1123333455677899999999999987653 445569999999999999999999999876
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.88 E-value=1.3 Score=39.48 Aligned_cols=76 Identities=7% Similarity=0.051 Sum_probs=59.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChHHHHHH
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS-----RGFSVDSATGNAF 190 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l 190 (412)
+...++..+...|++++|...++.+.... +.+...|..+|.++.+.|+..+|++.|++..+ -|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34567778888899999998888887665 66777899999999999999999999988754 4888887665433
Q ss_pred HH
Q 040580 191 II 192 (412)
Q Consensus 191 i~ 192 (412)
-.
T Consensus 252 ~~ 253 (388)
T 2ff4_A 252 ER 253 (388)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.19 E-value=1.4 Score=31.99 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=43.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHH
Q 040580 304 MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEA 367 (412)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 367 (412)
+..+..+-++.+....+-|++....+.+++|.|..++..|.++++-++.+..+....|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 4455666666666677777777777777777777777777777777755554455556665543
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.43 E-value=2.6 Score=41.03 Aligned_cols=52 Identities=10% Similarity=-0.087 Sum_probs=35.2
Q ss_pred HHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHH
Q 040580 228 TYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRM 280 (412)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 280 (412)
.+...|+++-|.++-++.....+. +-.+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345567777777777765443333 3477778888888888888877777665
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.31 E-value=4.9 Score=29.26 Aligned_cols=60 Identities=8% Similarity=0.037 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 040580 132 EIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192 (412)
Q Consensus 132 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 192 (412)
+..+-++.+-..++.|+|.+....+.+|-+.+++.-|.++|+-.+.+ +.+....|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34455555555566666666666666666666666666666665543 2223344554443
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.19 E-value=23 Score=36.72 Aligned_cols=27 Identities=4% Similarity=-0.193 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 114 VQVLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 114 ~~~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
...--.+..++...|++++|.+.|++.
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333344556666677777777777654
No 247
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.97 E-value=0.00023 Score=64.00 Aligned_cols=238 Identities=15% Similarity=0.112 Sum_probs=126.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYS 195 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 195 (412)
+|..|..+..+.+++.+|.+.|-+. -||..|..+|.+..+.|.+++-+..+.-.++..- +...=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 4555555555555555554433221 2234555566666666666655555544443322 2223334555666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH--------------------hcCCCCcchH
Q 040580 196 RFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV--------------------GLGRKDLGNL 255 (412)
Q Consensus 196 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------~~~~~~~~~~ 255 (412)
+.+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+ ....+.-++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 6655544333221 133333344444444444444444444332 1111222447
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHH
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG-PDLVTYGCVVDAY 334 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~ 334 (412)
||-.+-.+|...+.+.-|...--.+.- .|| -...++.-|.+.|.+++.+.+++.-. |++ .-.-+|+-|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence 888888888888888777554434431 222 23346667888899988888887654 332 3566777777777
Q ss_pred HhccccchHHHHHHhccCCCCCCcccHHHHHHHHhc-CCcccHHHHHH
Q 040580 335 LDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGK-GDFHSSSEAFL 381 (412)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~~~~~a~~~~~ 381 (412)
+|- ++++..+.++.....+ |. ..+|++|.+ --|.++.-++.
T Consensus 274 sKY-~PeKlmEHlklf~sri--Ni---pKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRV--NI---PKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSS--CC---TTTHHHHTTTTCHHHHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhc--cH---HHHHHHHHHHhhHHHHHHHHh
Confidence 764 6677777777762222 11 124666665 55555544443
No 248
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.96 E-value=0.0023 Score=57.62 Aligned_cols=243 Identities=12% Similarity=0.036 Sum_probs=153.0
Q ss_pred hhccccccccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 040580 13 KFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92 (412)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 92 (412)
+.-|..|..++.+.+++.+|+.-| ++..|+..|..+|.+..+.|++++-+..+...++.. -++..=+.|+.+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhh
Confidence 345677778888888888877654 455677788888999889999988888886555442 2444456788889988
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcC--------------------CCCCHHhH
Q 040580 93 GFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN--------------------ADLLPEVY 152 (412)
Q Consensus 93 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------~~~~~~~~ 152 (412)
++..+.+++. -.||+.-...+.+-|...|.++.|.-+|..+.... ---++.||
T Consensus 130 ~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 8866644433 13565556667777777777777766665543211 11234478
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040580 153 SRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKE 232 (412)
Q Consensus 153 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 232 (412)
--+-.+|...+++.-|.-.--.+.- .|| ....++..|-+.|.+++...+++.-... -+....+|+-|.-.|+|-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 8888888888877766544433332 222 2334666677888888877777765521 245677888888777764
Q ss_pred ccHHHHHHHHHHHhcCCCCc--------chHHHHHHHHHHhcCCChHHHH
Q 040580 233 RKFFMLGEFLRDVGLGRKDL--------GNLLWNLLLLSYAGNFKMKSLQ 274 (412)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~ 274 (412)
+.++..+.++.... +.+. ....|.-++-.|.+-.+++.|.
T Consensus 277 -~PeKlmEHlklf~s-riNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 -KPQKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp -CTTHHHHHHTTSSS-SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -CHHHHHHHHHHHHH-hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 34444444433211 1111 1245677777777777776654
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.91 E-value=34 Score=34.28 Aligned_cols=255 Identities=11% Similarity=0.042 Sum_probs=120.4
Q ss_pred HHhcCChHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC--CC---CHH--hHHHHHHHH
Q 040580 89 YANNGFVLEAQVVWEELLSSS--FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA--DL---LPE--VYSRAISCF 159 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~---~~~--~~~~li~~~ 159 (412)
....|+.+++..+++.-...+ -.+....-..+.-+...+|..+++..++.......- .- ++. .-.++--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 344566666655554443211 012223333333444555555566666655443221 00 011 112222223
Q ss_pred HhcCC-hHHHHHHHHHHHHCCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hccc
Q 040580 160 GKQGQ-LELMENTLKEMVSRGFSVDSATGN--AFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL--KERK 234 (412)
Q Consensus 160 ~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~ 234 (412)
+-.|. -+++.+.+..+....- +...... ++-..+.-.|+.+-...++..+.+. .+..+...+..+++ ..|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCC
Confidence 22332 2345555555544211 1111111 1222344556776667777666553 23344444444444 4566
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHH---HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHH
Q 040580 235 FFMLGEFLRDVGLGRKDLGNLLWN---LLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLS 311 (412)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 311 (412)
.+.+..+++.+.... ++ ..-|. ++..+|+..|+.....++++.+.+.. ..++.....+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 666666666654332 11 12232 33456677778766666777777531 22333333344445556666666666
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcccc-chHHHHHHhcc
Q 040580 312 LEHMKHESVGPDLVTYGCVVDAYLDKRLG-RNLDFGLSKMN 351 (412)
Q Consensus 312 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~ 351 (412)
+..+.+.+ .|..+.-..+.-+....|.. .++.+.+..+.
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66554433 45555444444455555554 35666666664
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.77 E-value=8.1 Score=34.89 Aligned_cols=99 Identities=11% Similarity=0.009 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCChHH--H
Q 040580 115 QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLL--PEVYSRAISCFGKQGQLELMENTLKEMVS---RGFSVDSAT--G 187 (412)
Q Consensus 115 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~--~ 187 (412)
.+...+...|.+.|+.+.|.+.|.++......+. .+.+-.+|..+...+++..+...+.+... .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4677888999999999999999999876543332 34777788888999999999988887643 233333221 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 040580 188 NAFIIYYSRFGSLTEMETAYGRLKRS 213 (412)
Q Consensus 188 ~~li~~~~~~g~~~~a~~~~~~~~~~ 213 (412)
..-...+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11111234567888888877666543
No 251
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.50 E-value=3.3 Score=34.51 Aligned_cols=9 Identities=0% Similarity=-0.049 Sum_probs=3.8
Q ss_pred HHhcCCChh
Q 040580 53 DLGRKKKPH 61 (412)
Q Consensus 53 ~~~~~~~~~ 61 (412)
..++.|+.+
T Consensus 11 ~A~~~g~~~ 19 (285)
T 1wdy_A 11 KAVQNEDVD 19 (285)
T ss_dssp HHHHTTCHH
T ss_pred HHHHcCCHH
Confidence 334444443
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.07 E-value=5.3 Score=27.32 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=58.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHH
Q 040580 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFG 346 (412)
Q Consensus 267 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 346 (412)
....++|..+-+-+...+. ....--+-+..+.+.|++++|..+.+.+ ..||...|-+| +-.|.|....+..-
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHH
Confidence 3467788877777776543 2222234455688899999998776653 37888888776 34477888888888
Q ss_pred HHhccCCCCCCcccH
Q 040580 347 LSKMNLDDSPVVSTD 361 (412)
Q Consensus 347 ~~~m~~~~~p~~~~~ 361 (412)
+..+.....|....|
T Consensus 92 L~~la~sg~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQDPRIQTF 106 (116)
T ss_dssp HHHHTTCCCHHHHHH
T ss_pred HHHHHhCCCHHHHHH
Confidence 877755555655444
No 253
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.53 E-value=12 Score=29.44 Aligned_cols=56 Identities=7% Similarity=-0.058 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040580 127 IGCFNEIISIIDQVSCRNADLLPE-VYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182 (412)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 182 (412)
++...++..+|..|...++..... .|......+...|++.+|.++|+.-.+++-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344567777777777777665544 66666677777777777777777777777666
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.35 E-value=10 Score=28.78 Aligned_cols=59 Identities=5% Similarity=0.006 Sum_probs=30.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcC-CCC---CHH----hHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 117 LSDLMDAYGRIGCFNEIISIIDQVSCRN-ADL---LPE----VYSRAISCFGKQGQLELMENTLKEM 175 (412)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~---~~~----~~~~li~~~~~~g~~~~a~~~~~~m 175 (412)
+-.-++.+...+.++.|+-+.+-+.... ..+ +|. ++..+.+++...|++.+|...|++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3344555666666666665555432211 111 121 4444556666666666666666664
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=80.94 E-value=48 Score=33.20 Aligned_cols=259 Identities=10% Similarity=-0.040 Sum_probs=134.4
Q ss_pred HHccCCHHHHHHHHHHHhhcCCCCCHH--hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------CCChHHHHHHHHHH
Q 040580 124 YGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFGKQGQLELMENTLKEMVSRGF-------SVDSATGNAFIIYY 194 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------~p~~~~~~~li~~~ 194 (412)
....|+.++++.++......+...++. .-..+.-+....|..+++..++.......- .+....-.++--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445667777766666543321112233 222344455566666677777777654311 01111112222222
Q ss_pred --HhcCCHHHHHHHHHHHHhCCCCCCHHH--HHH--HHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC
Q 040580 195 --SRFGSLTEMETAYGRLKRSRHLIDKEG--IRA--VSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268 (412)
Q Consensus 195 --~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~--li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 268 (412)
.-.++. ++...+..+.... +..+ ... +-..+.-.|+-+....++..+.....+ +..-..++.-++...|
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHTTT
T ss_pred HhcCCCCH-HHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhhhCC
Confidence 223443 4444444444322 2221 222 222344557777777777765433221 2233344445555788
Q ss_pred ChHHHHHHHHHHHHcCCCCcHhHHH---HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHH
Q 040580 269 KMKSLQREFMRMSEAGFHPDLTTFN---IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDF 345 (412)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 345 (412)
+.+.+..+++.+.... .|.. -|. .+..+|+..|+.....+++..+.+.. ..+......+--++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 9888888888887631 2332 232 34456788889888888988887642 2233333333334445788888888
Q ss_pred HHHhccCCCCCCcccHHHHHHHHhc-CC-cccHHHHHHHhcc-CchHH
Q 040580 346 GLSKMNLDDSPVVSTDPYVFEAFGK-GD-FHSSSEAFLEFKR-QRKWT 390 (412)
Q Consensus 346 ~~~~m~~~~~p~~~~~~~li~~~~~-~~-~~~a~~~~~~~~~-~~~~~ 390 (412)
+++.+.....|.+..-..+--+... |+ ..++.+.+..+.. +|..+
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 8887744445655543333333322 33 3567777777654 44333
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.71 E-value=12 Score=27.15 Aligned_cols=20 Identities=5% Similarity=-0.162 Sum_probs=8.1
Q ss_pred HHHhcCCChHHHHHHHHHHH
Q 040580 262 LSYAGNFKMKSLQREFMRMS 281 (412)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~m~ 281 (412)
-++.+.|++++|.+..+.+.
T Consensus 86 vg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 86 IGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444333
No 257
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=78.96 E-value=3.2 Score=33.52 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=2.9
Q ss_pred HhcCCHH
Q 040580 195 SRFGSLT 201 (412)
Q Consensus 195 ~~~g~~~ 201 (412)
+..|+.+
T Consensus 117 ~~~~~~~ 123 (240)
T 3eu9_A 117 AQFGHTS 123 (240)
T ss_dssp HHTTCHH
T ss_pred HHcCHHH
Confidence 3444443
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.91 E-value=11 Score=28.76 Aligned_cols=61 Identities=11% Similarity=-0.019 Sum_probs=34.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhc-CCCCCH-------HhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSE-GLLPDN-------STLCALMLCYANNGFVLEAQVVWEELL 106 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~ 106 (412)
.+-.-++.+...|.++.|+-+.+.+... +..|+. .++..+..++-..+++..|...|++.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444455666666677776666654432 112221 244445566666777777777777654
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.67 E-value=5 Score=27.40 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHH
Q 040580 267 NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFG 346 (412)
Q Consensus 267 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 346 (412)
....++|..+-+-+...+. ....--+-+..+.+.|++++|..+.+.+ ..||...|-+| +-.|.|..+.+..-
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHH
Confidence 3467788777777776542 2222234455678889999988766543 37888888766 34577888888887
Q ss_pred HHhccCCCCCCcccH
Q 040580 347 LSKMNLDDSPVVSTD 361 (412)
Q Consensus 347 ~~~m~~~~~p~~~~~ 361 (412)
+..+.....|....|
T Consensus 91 L~~la~sg~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSSDPALADF 105 (115)
T ss_dssp HHHHHTCSSHHHHHH
T ss_pred HHHHHhCCCHHHHHH
Confidence 877744444554444
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.45 E-value=10 Score=31.37 Aligned_cols=47 Identities=9% Similarity=-0.147 Sum_probs=22.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHhccccchHHHHHH
Q 040580 302 MSMFWDLHLSLEHMKHESVGPDLVT--YGCVVDAYLDKRLGRNLDFGLS 348 (412)
Q Consensus 302 ~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~ 348 (412)
.+......++++.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3444444555566666666554321 1122333444555554444444
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.82 E-value=12 Score=31.11 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=26.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 90 ANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 90 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
.+.|++++++.....-++.. |-|...-..|+..+|-.|++++|.+-++...
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455555555554444443 4455555555555555555555555555443
No 262
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.23 E-value=20 Score=26.76 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040580 133 IISIIDQVSCRNADLLPE-VYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182 (412)
Q Consensus 133 a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 182 (412)
+.++|..|..+++..... .|......+...|++.+|.++|+.-.+++-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455566665555544333 44555555555566666666666555555555
No 263
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=77.12 E-value=5.2 Score=32.29 Aligned_cols=86 Identities=10% Similarity=-0.074 Sum_probs=42.8
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCHHh--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHc
Q 040580 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDNST--LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQV--LSDLMDAYGR 126 (412)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~ 126 (412)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4445566777777777776666665444321 112344455566654 3444445554443211 1123334445
Q ss_pred cCCHHHHHHHHHHH
Q 040580 127 IGCFNEIISIIDQV 140 (412)
Q Consensus 127 ~~~~~~a~~~~~~m 140 (412)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 66666555555443
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.94 E-value=32 Score=30.96 Aligned_cols=99 Identities=13% Similarity=-0.091 Sum_probs=71.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCCHHhHHHH-
Q 040580 80 STLCALMLCYANNGFVLEAQVVWEELLSS--SFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRN-ADLLPEVYSRA- 155 (412)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l- 155 (412)
.+...+...+.+.|+++.|.+.|.++... +..--...+-.+++.+...+++..+...+++....- -.+++..-+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46777889999999999999999999864 223346788889999999999999999998875431 12333332221
Q ss_pred ---HHHHHhcCChHHHHHHHHHHHHC
Q 040580 156 ---ISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 156 ---i~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
...+...+++..|-..|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 22234678899998888876553
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.90 E-value=15 Score=25.09 Aligned_cols=77 Identities=13% Similarity=0.022 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHhHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 040580 58 KKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135 (412)
Q Consensus 58 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 135 (412)
..-++|..+-+.+...| + .-...+| ..+.+.|++++|..+.+.+. .||...|-+|.. .+.|..+.+..
T Consensus 20 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 34567777777666654 2 2222333 34567777777776654443 677777766644 36677777777
Q ss_pred HHHHHhhcC
Q 040580 136 IIDQVSCRN 144 (412)
Q Consensus 136 ~~~~m~~~~ 144 (412)
-+.++..+|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 776776655
No 266
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=76.45 E-value=38 Score=29.53 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCC--hhHHHHHHHHHHhCCCCCC
Q 040580 256 LWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM--FWDLHLSLEHMKHESVGPD 323 (412)
Q Consensus 256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 323 (412)
..+.++.-|...|+.++|.+.++++....+. .......+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 4567777777788888888887777621111 12334455555555433 3456677777776665544
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.30 E-value=16 Score=25.04 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=48.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHhHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 040580 58 KKPHLAHQLVNTVKSEGLLPDNSTLCALM--LCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS 135 (412)
Q Consensus 58 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 135 (412)
..-++|..+-+.+...| + .-...+| ..+.+.|++++|..+.+.+. .||...|-+|.. .+.|..+.+..
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 34567777777766654 3 2222333 34667788888777665543 677777776654 36677777777
Q ss_pred HHHHHhhcC
Q 040580 136 IIDQVSCRN 144 (412)
Q Consensus 136 ~~~~m~~~~ 144 (412)
-+.++..+|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 776776655
No 268
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=76.06 E-value=29 Score=29.65 Aligned_cols=44 Identities=11% Similarity=-0.041 Sum_probs=20.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHh---HHHHHHHHHhcCChH
Q 040580 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNST---LCALMLCYANNGFVL 96 (412)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~ 96 (412)
+.+...++.|+++-+..++ +.|..|+... -.+-+...+..|+.+
T Consensus 27 t~L~~Av~~g~~~~V~~LL----~~Gadvn~~~~~~g~TpLh~A~~~g~~~ 73 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED 73 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCcCHHHHHHHcCCHH
Confidence 3444445667765554444 3455444221 112233345566654
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.92 E-value=23 Score=29.36 Aligned_cols=55 Identities=7% Similarity=-0.101 Sum_probs=38.2
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHh
Q 040580 262 LSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKH 317 (412)
Q Consensus 262 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 317 (412)
....+.|.+++++.....-.+.. +-|...-..++.-+|-.|++++|.+-++...+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34566777888877777666552 34555666778888888888888877776655
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=74.86 E-value=13 Score=29.89 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=5.7
Q ss_pred ccCCHHHHHHHHHH
Q 040580 126 RIGCFNEIISIIDQ 139 (412)
Q Consensus 126 ~~~~~~~a~~~~~~ 139 (412)
+.|+.+.+..+++.
T Consensus 18 ~~g~~~~v~~Ll~~ 31 (241)
T 1k1a_A 18 VQGNLPAVHRLVNL 31 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 33444444444433
No 271
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=74.79 E-value=39 Score=28.77 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCC--hhHHHHHHHHHHhCCCCCC
Q 040580 255 LLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSM--FWDLHLSLEHMKHESVGPD 323 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 323 (412)
...+.++.-|...|+.++|.+.++++....+. .......+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 34567778888888888888888877621111 12333445555555433 3456677777776665544
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.61 E-value=42 Score=28.63 Aligned_cols=114 Identities=9% Similarity=-0.055 Sum_probs=66.7
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHH----HHHHHHhCCCCcCHHHHHHH
Q 040580 45 VDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQV----VWEELLSSSFVLSVQVLSDL 120 (412)
Q Consensus 45 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~l 120 (412)
..|.++..-|.+.+++++|++++..--. .+.+.|+...|-+ +.+...+.+++++......+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3456666667777777777777654322 1344455444333 45555566777777777777
Q ss_pred HHHHHccCCHH-HHHHHHHHHhh----cC--CCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 040580 121 MDAYGRIGCFN-EIISIIDQVSC----RN--ADLLPEVYSRAISCFGKQGQLELMENTLK 173 (412)
Q Consensus 121 i~~~~~~~~~~-~a~~~~~~m~~----~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 173 (412)
+..+.....-+ .-.++++++.. .+ ..-+|.....+...|.+.|++.+|..-|-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 77766543211 12233333322 11 12466777788888888888888776553
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.94 E-value=26 Score=25.87 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=13.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHc
Q 040580 259 LLLLSYAGNFKMKSLQREFMRMSEA 283 (412)
Q Consensus 259 ~li~~~~~~g~~~~a~~~~~~m~~~ 283 (412)
.|.-++.+.|++++|.+..+.+.+.
T Consensus 82 yLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 82 YLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3445555555555555555555543
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.30 E-value=30 Score=26.25 Aligned_cols=50 Identities=4% Similarity=0.059 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040580 133 IISIIDQVSCRNADLLPE-VYSRAISCFGKQGQLELMENTLKEMVSRGFSV 182 (412)
Q Consensus 133 a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 182 (412)
..++|..|..+++..... .|......+...|++.+|.++|..-.+++..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444566665555544433 44555555555666666666666666655555
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=69.83 E-value=38 Score=26.49 Aligned_cols=188 Identities=12% Similarity=-0.008 Sum_probs=122.8
Q ss_pred CChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040580 27 KNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELL 106 (412)
Q Consensus 27 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 106 (412)
++.+....+.+.+..++...-...+..+.+.+.. .+...+..+.. .++...-...+.++.+.++.+....+.+ +.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l 90 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-AL 90 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HT
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HH
Confidence 3445555666667777887777788888888874 44444445554 3577777777888888887554444443 33
Q ss_pred hCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 040580 107 SSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSAT 186 (412)
Q Consensus 107 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 186 (412)
+ .++..+-...+.++.+.++.+.. ..+.++.. .+++.+-...+.++.+.|+.+ +...+.++.+ .++...
T Consensus 91 ~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~v 159 (211)
T 3ltm_A 91 K---DEDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWV 159 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHH
T ss_pred c---CCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHH
Confidence 3 46777788888888888886543 44444432 467777777788888887754 4555555554 367777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 040580 187 GNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234 (412)
Q Consensus 187 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (412)
-...+.++.+.+.. .+...+..+.+. ++..+-...+.++.+.+.
T Consensus 160 r~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 160 RQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 77788888888874 455555555553 577777777777776543
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.92 E-value=65 Score=28.53 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 040580 189 AFIIYYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 189 ~li~~~~~~g~~~~a~~~~~~~~~ 212 (412)
-+...|...|++.+|..++..+.+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455666666666666666665554
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=66.58 E-value=66 Score=28.06 Aligned_cols=68 Identities=9% Similarity=0.063 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC--ChHHHHHHHHHHHHcCCCCcH
Q 040580 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF--KMKSLQREFMRMSEAGFHPDL 289 (412)
Q Consensus 221 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~ 289 (412)
....++.-|...++.++|.+.++++..+...+ ......+..++-+.+ ..+....++..+...|+-+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 46778888999999999999999997765432 345556666666544 345678888888877655443
No 278
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=66.16 E-value=16 Score=28.37 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=5.4
Q ss_pred ccCCHHHHHHHH
Q 040580 126 RIGCFNEIISII 137 (412)
Q Consensus 126 ~~~~~~~a~~~~ 137 (412)
..|+.+.+..++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444444
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=65.47 E-value=30 Score=28.09 Aligned_cols=88 Identities=11% Similarity=0.031 Sum_probs=44.7
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhc--CCCC----CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 040580 50 LVEDLGRKKKPHLAHQLVNTVKSE--GLLP----DNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDA 123 (412)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 123 (412)
-++.+....++++|.+++++..+. ++++ +.......+..-.....-..+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 466777888888888888876542 2221 111222223332333333334444444422 3344444555566
Q ss_pred HHccCCHHHHHHHHHHH
Q 040580 124 YGRIGCFNEIISIIDQV 140 (412)
Q Consensus 124 ~~~~~~~~~a~~~~~~m 140 (412)
+.+.|+.++|.++|=+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 66666666666666444
No 280
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.11 E-value=1e+02 Score=29.32 Aligned_cols=51 Identities=10% Similarity=-0.074 Sum_probs=27.3
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHH
Q 040580 265 AGNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMK 316 (412)
Q Consensus 265 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 316 (412)
.+.|+++.|...|+.|...... ...-.--+..++...|+.++|..+|..+.
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3456666666666666532111 12222234455566666666666666654
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.97 E-value=40 Score=24.30 Aligned_cols=65 Identities=14% Similarity=0.211 Sum_probs=36.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 040580 117 LSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ--LELMENTLKEMVSRGFSV 182 (412)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p 182 (412)
.+.++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45566777777777777777777742211 111133344444444432 355666777776666544
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=62.52 E-value=46 Score=24.84 Aligned_cols=63 Identities=8% Similarity=0.102 Sum_probs=30.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCC
Q 040580 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK--MKSLQREFMRMSEAGFH 286 (412)
Q Consensus 223 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 286 (412)
..++.-|...|+.++|.+.++++..+... ...+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34455555555555555555555433221 12333444444444322 34455666666655443
No 283
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=61.04 E-value=81 Score=27.19 Aligned_cols=134 Identities=8% Similarity=0.014 Sum_probs=75.2
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHH----HHHHHHHhCCCCcCHHHHHHHH
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQ----VVWEELLSSSFVLSVQVLSDLM 121 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~----~~~~~m~~~~~~~~~~~~~~li 121 (412)
+|-++..-|.+.+++++|++++-.--. .+.+.|+...+- -+.+-..+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455666677778888888887654322 133445544333 3345555667777777777777
Q ss_pred HHHHccCCHH-HHHHHHHHHhh----cC--CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 040580 122 DAYGRIGCFN-EIISIIDQVSC----RN--ADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYY 194 (412)
Q Consensus 122 ~~~~~~~~~~-~a~~~~~~m~~----~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 194 (412)
..+.....-+ .-..+.+++.. .| ..-+|.....+...|.+.+++.+|..-|- .|-.++...|..++..+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 7776655321 11223333321 11 23456677777788888888888777662 23333335665555444
Q ss_pred HhcC
Q 040580 195 SRFG 198 (412)
Q Consensus 195 ~~~g 198 (412)
...+
T Consensus 178 ~~~~ 181 (336)
T 3lpz_A 178 YKQD 181 (336)
T ss_dssp HHTS
T ss_pred HHhc
Confidence 4433
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.56 E-value=91 Score=27.62 Aligned_cols=129 Identities=10% Similarity=0.037 Sum_probs=55.7
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhc-CCCC---CHHhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCcCHHHH---
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSE-GLLP---DNSTLCALMLCYANNG-FVLEAQVVWEELLSSSFVLSVQVL--- 117 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~--- 117 (412)
+...+...|.+.|+.++..+++...... +.-| .......++..+.... ..+.-.++..+..+.. .-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4455666666666666666666554321 1111 1223344555554432 2222222222222110 0001111
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-H----HhHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 118 ---SDLMDAYGRIGCFNEIISIIDQVSCRNADLL-P----EVYSRAISCFGKQGQLELMENTLKEM 175 (412)
Q Consensus 118 ---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~----~~~~~li~~~~~~g~~~~a~~~~~~m 175 (412)
.-|+..|...|++.+|.+++.++.+.--..| . ++|-.-+..|...+++.++...+...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2355555566666666555555543211111 0 13444455555555555555555544
No 285
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=58.98 E-value=88 Score=27.35 Aligned_cols=171 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC-CChHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 040580 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN-FKMKSLQREFMRMSEAGFHPDLTTFNIRAVAF 299 (412)
Q Consensus 221 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 299 (412)
....++.-|...|+.++|.+.++++..+..-.....+..+..++-+. ...+.+..++..+...|+-+.......+...+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ll 93 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_pred HccCChhH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccchHHHHHHhc-cCCCCCCcccHHHHHHHHhcCCcc
Q 040580 300 SRMSMFWD----LHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRNLDFGLSKM-NLDDSPVVSTDPYVFEAFGKGDFH 374 (412)
Q Consensus 300 ~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~p~~~~~~~li~~~~~~~~~ 374 (412)
....+..- |..++.++...-+.-+..+...+-..+...+...-...++..+ +... -..+...+.+++.+
T Consensus 94 e~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~~G------~~~l~~l~~~sgl~ 167 (364)
T 3l6a_A 94 DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQD------REWLTELFQQSKVN 167 (364)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHHSC------HHHHHHHHHHHTCC
T ss_pred hhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHhcC------HHHHHHHHHHcCCC
Q ss_pred cHHHHHHHhccCchHHHHHHHHHHHHcC
Q 040580 375 SSSEAFLEFKRQRKWTYRKLIAVYLKKQ 402 (412)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g 402 (412)
+.++.|++..+-..+...+...|
T Consensus 168 -----l~~FlPe~~~~~~~~~e~~~~~~ 190 (364)
T 3l6a_A 168 -----MQKMLPEIDQNKDRMLEILEGKG 190 (364)
T ss_dssp -----SGGGSCGGGCSHHHHHHHHHHHT
T ss_pred -----HHHhCCccccchhHHHHHHHhCC
No 286
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=58.85 E-value=57 Score=27.70 Aligned_cols=296 Identities=9% Similarity=-0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH--hHHHHHHHHH
Q 040580 83 CALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCFG 160 (412)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~ 160 (412)
...+...++.|+.+....++......--..|..-.+.|..+..... .++++.+.+.|..++.. .-.+.+...+
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR-----VRIVQLLLQHGADVHAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCccCCCCCcHHHHHH
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------------------
Q 040580 161 KQGQLELMENTLKEMVSRGFSVDSATGN--AFIIYYSRFGSLTEMETAYGRLKRSRHLIDK------------------- 219 (412)
Q Consensus 161 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------------------- 219 (412)
..|+.+ +++.+.+.|..++..... +.+...+..|+.+ +.+.+.+.|..|+.
T Consensus 100 ~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~ 171 (351)
T 3utm_A 100 SYGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVE----VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171 (351)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHH
T ss_pred HCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCccccCCCCcchHHHhhhhhHH
Q ss_pred ----HHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHH--H
Q 040580 220 ----EGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF--N 293 (412)
Q Consensus 220 ----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~ 293 (412)
.....-+...+..++.+....++..-....... ..-.+.+...+..+. ..-.++++.+.+.|..++.... .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~t~L~~A~~~~~-~~~~~~~~~Ll~~g~~~~~~~~~g~ 248 (351)
T 3utm_A 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP--QSHETALHCAVASLH-PKRKQVAELLLRKGANVNEKNKDFM 248 (351)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCT--TTCCCHHHHHHHCCS-TTHHHHHHHHHHTTCCTTCCCTTCC
T ss_pred HHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCC--CCCCCHHHHHHHHhC-ccHHHHHHHHHHcCCCcCCcCCCCC
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHhcC
Q 040580 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTY--GCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKG 371 (412)
Q Consensus 294 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 371 (412)
+.+...++.|+. ++++.+.+.|..++.... .+.+...+..|+.+-+.-+++.-..-..+|..-.+.+--+
T Consensus 249 t~L~~A~~~g~~----~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a---- 320 (351)
T 3utm_A 249 TPLHVAAERAHN----DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG---- 320 (351)
T ss_dssp CHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----
T ss_pred CHHHHHHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----
Q ss_pred CcccHHHHHHHhccCchHHHHHHHHHHHHcCc
Q 040580 372 DFHSSSEAFLEFKRQRKWTYRKLIAVYLKKQL 403 (412)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 403 (412)
.....+.+.+..+.....-..-+..-++.|+
T Consensus 321 -~~~~~~~l~~~~~~~~~~~~~~l~~A~~~gd 351 (351)
T 3utm_A 321 -NEAVQQILSESTPMRTSDVDYRLLEASKAGD 351 (351)
T ss_dssp -CHHHHHHHHHC--------------------
T ss_pred -hHHHHHHHHhccccccCcceeehhhhhccCC
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.82 E-value=65 Score=25.37 Aligned_cols=56 Identities=7% Similarity=0.043 Sum_probs=35.1
Q ss_pred cCChHHHHHHHHHHHhCCCC-cCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 040580 92 NGFVLEAQVVWEELLSSSFV-LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147 (412)
Q Consensus 92 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 147 (412)
.+.......+|..|...|+- --+..|-.....+...|++.+|.++|+.-.+++-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34455677777777665543 234556666666667777777777777666665544
No 288
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=58.80 E-value=11 Score=30.80 Aligned_cols=56 Identities=9% Similarity=0.001 Sum_probs=33.8
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCHHh-------HHHHHHHHH--hcCChHHHHHHHHHHH
Q 040580 51 VEDLGRKKKPHLAHQLVNTVKSEGLLPDNST-------LCALMLCYA--NNGFVLEAQVVWEELL 106 (412)
Q Consensus 51 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~m~ 106 (412)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3445567888888788887777766655333 233433332 5577777666666543
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.50 E-value=69 Score=25.97 Aligned_cols=88 Identities=8% Similarity=-0.163 Sum_probs=43.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC--CCCc----CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 040580 85 LMLCYANNGFVLEAQVVWEELLSS--SFVL----SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158 (412)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (412)
-+..+....++++|..+.++..+. ++++ ........+..-.....-.-+..+.+++.. ..++..-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 466778888888888888776541 2221 111122222222222223333334444422 3334444555566
Q ss_pred HHhcCChHHHHHHHHHH
Q 040580 159 FGKQGQLELMENTLKEM 175 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m 175 (412)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 66666666666666544
No 290
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=58.24 E-value=47 Score=25.54 Aligned_cols=27 Identities=7% Similarity=-0.170 Sum_probs=12.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcC
Q 040580 87 LCYANNGFVLEAQVVWEELLSSSFVLS 113 (412)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~m~~~~~~~~ 113 (412)
...+..|+.+.-.++.+.+++.|..++
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 333444444444445555555554443
No 291
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=58.16 E-value=17 Score=28.19 Aligned_cols=80 Identities=10% Similarity=0.015 Sum_probs=34.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcccH
Q 040580 159 FGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE---GIRAVSFTYLKERKF 235 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~ 235 (412)
.+..|+.+.+..++..-...--.++..-.+.| ...++.|+.+ +++.+.+.|..++.. ..+. +...+..|+.
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~ 85 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDIE----IAKALIDRGADINLQNSISDSP-YLYAGAQGRT 85 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCH
Confidence 35567777666655422100001122223333 3344566654 444444556544321 1122 2233344555
Q ss_pred HHHHHHHHH
Q 040580 236 FMLGEFLRD 244 (412)
Q Consensus 236 ~~a~~~~~~ 244 (412)
+-+..+++.
T Consensus 86 ~~~~~Ll~~ 94 (201)
T 3hra_A 86 EILAYMLKH 94 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555555543
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=57.59 E-value=88 Score=26.56 Aligned_cols=68 Identities=9% Similarity=0.080 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCCCcH
Q 040580 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK--MKSLQREFMRMSEAGFHPDL 289 (412)
Q Consensus 221 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~ 289 (412)
....++.-|...|+.++|.+.++++..+...+ ......+..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 35567778888899999999999987653332 3455566666666433 46677888888877655443
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.55 E-value=15 Score=30.74 Aligned_cols=9 Identities=0% Similarity=-0.330 Sum_probs=3.7
Q ss_pred HHcCCCCcH
Q 040580 281 SEAGFHPDL 289 (412)
Q Consensus 281 ~~~~~~p~~ 289 (412)
.+.|..|+.
T Consensus 215 l~~gad~~~ 223 (285)
T 3kea_A 215 FKYDINIYS 223 (285)
T ss_dssp TTSCBCSTT
T ss_pred HHcCCCCCC
Confidence 334444443
No 294
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=57.30 E-value=18 Score=24.65 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=17.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 59 KPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA 98 (412)
Q Consensus 59 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 98 (412)
..++|.++++.+.++| +.+|..++.++...++...|
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 4455555555555443 23455555555444444443
No 295
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=57.16 E-value=53 Score=23.86 Aligned_cols=67 Identities=7% Similarity=-0.031 Sum_probs=29.3
Q ss_pred CcCHHHHHHHHHHHHccCCH---HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 111 VLSVQVLSDLMDAYGRIGCF---NEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 111 ~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
.|+..+--.+.-++.++.+. .++..+++++...+..-..+.+-.|.-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444433344444444332 23444555444333111122334444455555555555555555554
No 296
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=56.78 E-value=1.4e+02 Score=28.44 Aligned_cols=113 Identities=10% Similarity=-0.051 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHhHH----HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 040580 129 CFNEIISIIDQVSCRNADLLPEVYS----RAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204 (412)
Q Consensus 129 ~~~~a~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 204 (412)
+.+.|...+....... ..++.... .+.......+...++...+....... ++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777775544 33444222 22223333443445555555544432 23333333444455678888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 040580 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDV 245 (412)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 245 (412)
..|+.|..... ....-.--+..++...|+.++|..+|..+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88877755321 13333455566667778888888877764
No 297
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=56.27 E-value=44 Score=22.64 Aligned_cols=57 Identities=9% Similarity=-0.047 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHH-----HhCCCCCCHhhHHHH
Q 040580 272 SLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHM-----KHESVGPDLVTYGCV 330 (412)
Q Consensus 272 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m-----~~~g~~p~~~~~~~l 330 (412)
.|.++.++....|+.|+..+..-++.-|...+. + +.++..+. ...|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 355667777778888888777777777776664 2 33333222 246788887776655
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=56.03 E-value=9.7 Score=30.49 Aligned_cols=15 Identities=20% Similarity=0.007 Sum_probs=7.2
Q ss_pred HHHHHHhcCChHHHH
Q 040580 85 LMLCYANNGFVLEAQ 99 (412)
Q Consensus 85 ll~~~~~~~~~~~a~ 99 (412)
.+...+..|+.+-+.
T Consensus 45 ~L~~A~~~~~~~~v~ 59 (240)
T 3eu9_A 45 LLHWAAINNRIDLVK 59 (240)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCHHHHH
Confidence 344455556654333
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.84 E-value=34 Score=25.53 Aligned_cols=65 Identities=14% Similarity=0.211 Sum_probs=35.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 040580 117 LSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQ--LELMENTLKEMVSRGFSV 182 (412)
Q Consensus 117 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p 182 (412)
.+.++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45567777777777777777777742211 111133344444444322 445666677776665543
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.78 E-value=54 Score=23.57 Aligned_cols=63 Identities=8% Similarity=0.094 Sum_probs=30.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC--ChHHHHHHHHHHHHcCCC
Q 040580 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF--KMKSLQREFMRMSEAGFH 286 (412)
Q Consensus 223 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~ 286 (412)
..++.-|...|+.++|.+.++++..+... .......+..++-+.+ ..+.+..++..+.+.|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34455555556666666666655433221 1233344444444443 234556666666655543
No 301
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=55.66 E-value=24 Score=27.31 Aligned_cols=91 Identities=5% Similarity=0.028 Sum_probs=53.4
Q ss_pred ccCCCChHHHHHHHHHhhcc-C-hhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHh---HHHHHHHHHh-cCChH
Q 040580 23 QTHPKNGDLARKIIRYRKQE-G-FVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNST---LCALMLCYAN-NGFVL 96 (412)
Q Consensus 23 ~~~~~~~~~A~~~~~~~~~~-~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~-~~~~~ 96 (412)
.++.|+++....+++.-... + ..-+ +.+...+..|+.+.-.++.+.+.+.|..|+... .+.|..++.. ..+..
T Consensus 13 Aa~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHH
T ss_pred HHHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchh
Confidence 35778888877777653321 2 1122 445566677777777788888888888776432 2333333322 22344
Q ss_pred HHHHHHHHHHhCCCCcCH
Q 040580 97 EAQVVWEELLSSSFVLSV 114 (412)
Q Consensus 97 ~a~~~~~~m~~~~~~~~~ 114 (412)
...++.+.+++.|..++.
T Consensus 92 ~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHTTCCSSS
T ss_pred hHHHHHHHHHHCCCCCCc
Confidence 455666777777765543
No 302
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.58 E-value=27 Score=31.24 Aligned_cols=206 Identities=8% Similarity=0.065 Sum_probs=91.6
Q ss_pred cccccccCCCChHHHHHHHHHhhccChh--hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHH--hHHHHHHHHHhcC
Q 040580 18 NVPSHQTHPKNGDLARKIIRYRKQEGFV--DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNS--TLCALMLCYANNG 93 (412)
Q Consensus 18 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~ 93 (412)
..+..-+..|+.+-+..+++.-..++.. ...+.+...+..|+.+-+..++ +.|..++.. .-.+.+...+..|
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCC
Confidence 3444556778888887777764433221 1123344455667665444444 344433321 1122344455667
Q ss_pred ChHHHHHHHHHHHhCCCCcCH---HHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 040580 94 FVLEAQVVWEELLSSSFVLSV---QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMEN 170 (412)
Q Consensus 94 ~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 170 (412)
+.+-+.-+ .+.|..|+. ... +.+...++.|+.+-+..+++.-.... ..+..-++ .+...+..|+.+-
T Consensus 92 ~~~~v~~L----l~~ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t-~L~~A~~~g~~~~--- 161 (437)
T 1n11_A 92 HTNMVKLL----LENNANPNLATTAGH-TPLHIAAREGHVETVLALLEKEASQA-CMTKKGFT-PLHVAAKYGKVRV--- 161 (437)
T ss_dssp CHHHHHHH----HHHTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCC-HHHHHHHTTCHHH---
T ss_pred CHHHHHHH----HhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCC-HHHHHHHcCCHHH---
Confidence 76544443 444433332 112 23344456677766655554321111 01111122 2333445566543
Q ss_pred HHHHHHHCCCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcccHHHHHHHHH
Q 040580 171 TLKEMVSRGFSVDSA---TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEG--IRAVSFTYLKERKFFMLGEFLR 243 (412)
Q Consensus 171 ~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~ 243 (412)
++.+.+.|..|+.. ..+ .+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+..+++
T Consensus 162 -v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 233 (437)
T 1n11_A 162 -AELLLERDAHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233 (437)
T ss_dssp -HHHHHHTTCCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHhCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 34444455544321 122 233444556654 3444444554432211 1112333345566655555554
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.17 E-value=19 Score=28.88 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 040580 167 LMENTLKEMVSRGFSVD-SATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218 (412)
Q Consensus 167 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 218 (412)
...++|..|..+|+.-. ..-|......+...|++.+|..||+.=++.+-.|-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44455666655554432 23445555555555666666666655555555553
No 304
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=55.13 E-value=15 Score=29.34 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=7.2
Q ss_pred ccCChhHHHHHHHHHH
Q 040580 301 RMSMFWDLHLSLEHMK 316 (412)
Q Consensus 301 ~~g~~~~a~~~~~~m~ 316 (412)
..|+.+.+.++.+.+.
T Consensus 219 ~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQ 234 (237)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444444444444443
No 305
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=55.04 E-value=7.6 Score=31.85 Aligned_cols=55 Identities=16% Similarity=0.038 Sum_probs=29.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHH-------HHHHHHHHHH--ccCCHHHHHHHHHHH
Q 040580 86 MLCYANNGFVLEAQVVWEELLSSSFVLSVQ-------VLSDLMDAYG--RIGCFNEIISIIDQV 140 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~--~~~~~~~a~~~~~~m 140 (412)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+.-+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334456677777777777666665444422 2233433332 456665555555543
No 306
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=54.47 E-value=40 Score=21.67 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=35.1
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHccC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcccc
Q 040580 279 RMSEAGFHPDLTTFNIRAVAFSRMS-MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLG 340 (412)
Q Consensus 279 ~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 340 (412)
.|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|-.
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3555666665443 34555555543 4455666777766665555666666666666665544
No 307
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=54.02 E-value=27 Score=27.86 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=7.7
Q ss_pred cCCcccHHHHHHHh
Q 040580 370 KGDFHSSSEAFLEF 383 (412)
Q Consensus 370 ~~~~~~a~~~~~~~ 383 (412)
.++...+.++.+.+
T Consensus 220 ~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 220 NSQVWSALQMSKAL 233 (237)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 36665555555544
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=53.77 E-value=35 Score=29.50 Aligned_cols=24 Identities=13% Similarity=-0.021 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHH
Q 040580 221 GIRAVSFTYLKERKFFMLGEFLRD 244 (412)
Q Consensus 221 ~~~~li~~~~~~~~~~~a~~~~~~ 244 (412)
....++..+.+....+.+.++|.+
T Consensus 143 fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 143 LLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHH
Confidence 344445555555556666666665
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.98 E-value=52 Score=24.16 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=38.0
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHH
Q 040580 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFN 131 (412)
Q Consensus 68 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 131 (412)
+.+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|-.--++.+.+.|-+.
T Consensus 11 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 3456677766654433 33444455566677777777777665556666555666676666543
No 310
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=52.73 E-value=52 Score=23.83 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=43.8
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHccC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccch
Q 040580 279 RMSEAGFHPDLTTFNIRAVAFSRMS-MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342 (412)
Q Consensus 279 ~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 342 (412)
.+++.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-..++.+...|-..+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 45667877765433 4566666665 667788999998888777777777777778877776543
No 311
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=52.70 E-value=77 Score=24.36 Aligned_cols=188 Identities=12% Similarity=0.008 Sum_probs=121.3
Q ss_pred CCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 040580 26 PKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEEL 105 (412)
Q Consensus 26 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 105 (412)
......--.+++.+..+|...-...+..+.+.+..+....+. ++.. .++...-...+.++.+.++.+....+.+ +
T Consensus 10 ~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~ 84 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIK-A 84 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-H
T ss_pred ccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-H
Confidence 334455556677777788888778888888887654444444 4443 3577666677777888887654444444 4
Q ss_pred HhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH
Q 040580 106 LSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSA 185 (412)
Q Consensus 106 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 185 (412)
.. .++..+-...+.++.+.++.+.... +.++.. .+++.+-...+.++.+.++.+ +...+.++.. .++..
T Consensus 85 l~---d~~~~vr~~a~~aL~~~~~~~~~~~-L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~ 153 (201)
T 3ltj_A 85 LK---DEDGWVRQSAAVALGQIGDERAVEP-LIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGW 153 (201)
T ss_dssp TT---CSSHHHHHHHHHHHHHHCCGGGHHH-HHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHH
T ss_pred Hc---CCCHHHHHHHHHHHHHhCcHHHHHH-HHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHH
Confidence 33 4677788888888888887654433 444432 456777777788888877654 4555555554 35777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Q 040580 186 TGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233 (412)
Q Consensus 186 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 233 (412)
.-...+.++.+.|..+ +...+..+.+. ++..+-...+.++.+.+
T Consensus 154 vr~~A~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 154 VRQSAADALGEIGGER-VRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHHCSHH-HHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCchh-HHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 7777888888888754 55555555543 56777777777776644
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=52.61 E-value=36 Score=28.30 Aligned_cols=166 Identities=11% Similarity=-0.041 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHh--hccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 040580 26 PKNGDLARKIIRYR--KQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWE 103 (412)
Q Consensus 26 ~~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 103 (412)
..+..+..+++..- ..+|..-++. +...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+..+
T Consensus 9 ~~~~~~v~~lL~~~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L-- 81 (285)
T 3kea_A 9 TWKSKQLKSFLSSKDTFKADVHGHSA-SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKIL-- 81 (285)
T ss_dssp GCCHHHHHHHHHSTTTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHH--
T ss_pred hcCHHHHHHHHHhCCCCccCCCCCCH-HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHH--
Confidence 34455555555432 1223333333 33344566665444444 334433322222344555666776544443
Q ss_pred HHHhCCCCcCH---HHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH---hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040580 104 ELLSSSFVLSV---QVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE---VYSRAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 104 ~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
.+.|..++. .-++. +...+..|+.+-+.-+++. |..++.. -+.+.+...+..|+.+- ++.+.+
T Consensus 82 --l~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~ 150 (285)
T 3kea_A 82 --LFSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLS 150 (285)
T ss_dssp --HHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHT
T ss_pred --HHCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHh
Confidence 344544332 22223 3344456666655444443 3222211 22344444555666543 344444
Q ss_pred CCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040580 178 RGFSV-DSATGNAFIIYYSRFGSLTEMETAYGR 209 (412)
Q Consensus 178 ~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 209 (412)
.|..+ +...-.+.+...+..|+.+-+.-+++.
T Consensus 151 ~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 151 EIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp TSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 44433 221223344455667777766655554
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.51 E-value=51 Score=24.96 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCH
Q 040580 98 AQVVWEELLSSSFVL-SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLP 149 (412)
Q Consensus 98 a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 149 (412)
...+|..|...|+-. -+..|......+-..|++.+|.++|+.-.+++-.|..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 556677777666433 3455666666677777777777777777666654443
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=52.23 E-value=51 Score=23.89 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=37.8
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccH
Q 040580 174 EMVSRGFSVDSATGNAFIIYYSRFG-SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235 (412)
Q Consensus 174 ~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (412)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3566777765533 34555565555 5667888888888777666766665555655555443
No 315
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.00 E-value=81 Score=24.45 Aligned_cols=185 Identities=10% Similarity=-0.078 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 040580 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQV 140 (412)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 140 (412)
.++...+-.... .++...-...+..+.+.+..+....+.+ +.+ .++..+-...+.++.+.++.+.. ..+.++
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~ 89 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAV-EPLIKA 89 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHH
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCccHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHH
Confidence 344444444443 3577776677777777777544444443 443 35777777778888888875444 334343
Q ss_pred hhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 040580 141 SCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKE 220 (412)
Q Consensus 141 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 220 (412)
.. .+++.+-...+.++.+.|+.+ +...+.++.+ .|+...-...+.++.+.|+.+ +...+..+.+ .++..
T Consensus 90 l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~ 158 (211)
T 3ltm_A 90 LK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGW 158 (211)
T ss_dssp TT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHH
T ss_pred Hc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHH
Confidence 32 466777777888888888754 4444545554 467777777888888888754 4444444443 46788
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC
Q 040580 221 GIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNF 268 (412)
Q Consensus 221 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 268 (412)
+-...+.++.+.+..+ +...+..+-.. . +...-...+.++.+.+
T Consensus 159 vr~~a~~aL~~~~~~~-~~~~L~~~l~d-~--~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 159 VRQSAADALGEIGGER-VRAAMEKLAET-G--TGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHHCSHH-HHHHHHHHHHH-C--CHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCchh-HHHHHHHHHhC-C--CHHHHHHHHHHHHhcC
Confidence 8888888998888744 44444433222 2 2345555555555543
No 316
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=51.82 E-value=45 Score=21.43 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=31.4
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Q 040580 174 EMVSRGFSVDSATGNAFIIYYSRFG-SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKER 233 (412)
Q Consensus 174 ~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 233 (412)
.|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3455666555433 23444554443 34456666666666655555555555555555544
No 317
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=50.16 E-value=74 Score=23.44 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=12.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 040580 154 RAISCFGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 154 ~li~~~~~~g~~~~a~~~~~~m~~ 177 (412)
.|.-++.+.|++++|.+..+.+.+
T Consensus 82 yLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 82 YLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344445555555555555555544
No 318
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=50.03 E-value=91 Score=24.45 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=38.4
Q ss_pred HHHHHHHH---hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCC
Q 040580 153 SRAISCFG---KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS-----LTEMETAYGRLKRSRH 215 (412)
Q Consensus 153 ~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~ 215 (412)
--+|+++. +-.+++.|+-.+-+|.+.| .|....-..++.+.-..|. +..|...++.....|.
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33445554 4578888888888888888 7766666666666666653 2234444444455554
No 319
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=49.64 E-value=58 Score=24.12 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=45.5
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHccC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccch
Q 040580 278 MRMSEAGFHPDLTTFNIRAVAFSRMS-MFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGRN 342 (412)
Q Consensus 278 ~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 342 (412)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-..++.+...|-+.+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 446677877765433 4566666655 566789999998888777777777777888888776654
No 320
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.36 E-value=71 Score=23.61 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=36.8
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 040580 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234 (412)
Q Consensus 173 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (412)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3456677765443 334556666666667788888888777666666665555566555544
No 321
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.05 E-value=65 Score=24.25 Aligned_cols=70 Identities=6% Similarity=0.105 Sum_probs=41.1
Q ss_pred hHHHHHHH-HHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHccCCHH
Q 040580 61 HLAHQLVN-TVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSS--SFVLSVQVLSDLMDAYGRIGCFN 131 (412)
Q Consensus 61 ~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~ 131 (412)
+.+.+-+. .+.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|-..-++.+.+.|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34444333 3455677765543 33455566666677777777777766 54555555555566677776543
No 322
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=48.80 E-value=1.3e+02 Score=25.90 Aligned_cols=167 Identities=13% Similarity=0.088 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHH----HHHHHHhhcCCCCCHHhHHHHH
Q 040580 81 TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEII----SIIDQVSCRNADLLPEVYSRAI 156 (412)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~----~~~~~m~~~~~~~~~~~~~~li 156 (412)
+|.++..-|.+++++++|.+++-.-. ..+.+.|+...|- -+++...+.+++++......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455556888888888888754322 1222334433322 2334455566666666666666
Q ss_pred HHHHhcCChH-HHHHHHHHHH----HCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 040580 157 SCFGKQGQLE-LMENTLKEMV----SRG--FSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTY 229 (412)
Q Consensus 157 ~~~~~~g~~~-~a~~~~~~m~----~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 229 (412)
..+.....-+ .=..+.+++. +.| ..-|...-..+...|.+.+++.+|+.-|- .|-.+++..+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 6655443211 1122333332 222 22255555667778888888888877762 24344446665555555
Q ss_pred HhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040580 230 LKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281 (412)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 281 (412)
...+...++ | ....-.+--|...++...|..+++...
T Consensus 178 ~~~~~~~e~--------------d-lfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHTA--------------P-LYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGGH--------------H-HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCccH--------------H-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 443332111 1 223334445666678888877766554
No 323
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.26 E-value=1.7e+02 Score=27.07 Aligned_cols=66 Identities=6% Similarity=0.019 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC-CCCHH--hHH-HHHHHHHhcCChHHHHHHHHHHHHC
Q 040580 113 SVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA-DLLPE--VYS-RAISCFGKQGQLELMENTLKEMVSR 178 (412)
Q Consensus 113 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~--~~~-~li~~~~~~g~~~~a~~~~~~m~~~ 178 (412)
-...+|.+++.|...+.++.|..+..+..-... ..+.. .|. -+-..+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 357789999999999999999999998742110 11111 222 2345566788999999888887664
No 324
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=48.22 E-value=33 Score=27.12 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=8.0
Q ss_pred HHHccCCHHHHHHHHHH
Q 040580 123 AYGRIGCFNEIISIIDQ 139 (412)
Q Consensus 123 ~~~~~~~~~~a~~~~~~ 139 (412)
..++.|+.+....+++.
T Consensus 12 ~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 12 NLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33444555554444443
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.80 E-value=80 Score=23.14 Aligned_cols=59 Identities=8% Similarity=0.085 Sum_probs=28.4
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 040580 175 MVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234 (412)
Q Consensus 175 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (412)
+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 444555544322 22334444444444555555555555544555555555555555444
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=46.82 E-value=76 Score=23.45 Aligned_cols=62 Identities=10% Similarity=0.131 Sum_probs=33.3
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCH
Q 040580 68 NTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCF 130 (412)
Q Consensus 68 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 130 (412)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|-.--++.+.+.|-+
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345556665444332 33444445555666777777776655455555555555666666654
No 327
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.17 E-value=98 Score=23.71 Aligned_cols=171 Identities=12% Similarity=-0.030 Sum_probs=98.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 040580 77 PDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAI 156 (412)
Q Consensus 77 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 156 (412)
+|...-...+.++.+.+..+....+.+.+ + .++..+-...+.++.+.++.+....+. ++.. .+++.+-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHHH
Confidence 45555556666666666644444444333 3 356666666777777777654443333 3332 45677777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHH
Q 040580 157 SCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFF 236 (412)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 236 (412)
.++.+.++.+. ...+..+.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|..+
T Consensus 98 ~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 98 VALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp HHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCchh
Confidence 88888777543 344444443 356666677778888877654 3344444443 367788888888888887754
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHhcC
Q 040580 237 MLGEFLRDVGLGRKDLGNLLWNLLLLSYAGN 267 (412)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 267 (412)
-...+...+... +...-...+.++.+.
T Consensus 170 ~~~~L~~~l~d~----~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 170 VRAAMEKLAETG----TGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHC----CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC----CHHHHHHHHHHHHHH
Confidence 333333333222 224444445554443
No 328
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.06 E-value=55 Score=24.06 Aligned_cols=60 Identities=7% Similarity=0.099 Sum_probs=35.7
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 040580 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERK 234 (412)
Q Consensus 173 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (412)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34556677765532 33444555555 55777888888777766666665555555555443
No 329
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=44.78 E-value=1.1e+02 Score=23.97 Aligned_cols=83 Identities=7% Similarity=0.032 Sum_probs=50.7
Q ss_pred HHHHHhc---CCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChh-----HHHHHHHHHHhCCCCCCHhhHHHHH
Q 040580 260 LLLSYAG---NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW-----DLHLSLEHMKHESVGPDLVTYGCVV 331 (412)
Q Consensus 260 li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~-----~a~~~~~~m~~~g~~p~~~~~~~li 331 (412)
+|+++.+ -.+++.|+-.+.+|.+.| .|.-..-..++.+....|.-+ .|...++....-|.+--.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4455544 478999999999999999 777777777777777777532 3444555555567643333443333
Q ss_pred HHHHhccccchH
Q 040580 332 DAYLDKRLGRNL 343 (412)
Q Consensus 332 ~~~~~~~~~~~a 343 (412)
..++.+-.-..+
T Consensus 96 iyLA~aPKSNs~ 107 (204)
T 2r9g_A 96 VDLCLSPKSNSA 107 (204)
T ss_dssp HHHHHSCCCCHH
T ss_pred HHHHcCCccHHH
Confidence 344433333333
No 330
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.99 E-value=2.2e+02 Score=27.33 Aligned_cols=44 Identities=9% Similarity=0.176 Sum_probs=25.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 040580 116 VLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGK 161 (412)
Q Consensus 116 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 161 (412)
+| .+|-.|.|+|++++|.++.++....- .--...+-..+..|+.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~-~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANI-KKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC------CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhH-hhhhHHHHHHHHHHHh
Confidence 44 35667789999999999887765321 1111255555666653
No 331
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=42.61 E-value=1.6e+02 Score=25.08 Aligned_cols=166 Identities=8% Similarity=-0.063 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHH----HHHHHhhcCCCCCHHhHHHHHH
Q 040580 82 LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIIS----IIDQVSCRNADLLPEVYSRAIS 157 (412)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~li~ 157 (412)
|.++..-|.+++++++|.+++..-. ..+.+.|+...|-+ +++...+.+++++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3444445666677776666653322 12223344333322 3444445556666665555555
Q ss_pred HHHhcCChH-HHHHHHHHH----HHCCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040580 158 CFGKQGQLE-LMENTLKEM----VSRGF--SVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYL 230 (412)
Q Consensus 158 ~~~~~g~~~-~a~~~~~~m----~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 230 (412)
.+..-..-+ .=.++++++ .+.|- .-+......+...|.+.|++.+|+.-|-. |-.-+...+..++.-+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHH
Confidence 554422111 112223332 22221 12445555666667777777776665531 11112344444444443
Q ss_pred hc---ccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 040580 231 KE---RKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMS 281 (412)
Q Consensus 231 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 281 (412)
.. |...++- ....-.+-.|.-.|+...|..+|+...
T Consensus 177 ~~~~~~~~~e~d---------------lf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 177 CQVDDIEDSTVA---------------EFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTCCCHHHHH---------------HHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HhcCCCCcchHH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33 3222211 112223344555677777777777654
No 332
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=42.57 E-value=50 Score=24.10 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=24.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 040580 49 SLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94 (412)
Q Consensus 49 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 94 (412)
.++..+...++.-.|.++++.+.+.+...+..|.-.-|..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3445555544555566666666555555555554444555555443
No 333
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.22 E-value=87 Score=23.14 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=30.5
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccH
Q 040580 175 MVSRGFSVDSATGNAFIIYYSRFG-SLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKF 235 (412)
Q Consensus 175 m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (412)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455555443322 2344444443 4445666666666555555555555555555555543
No 334
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.66 E-value=53 Score=23.61 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=24.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 040580 50 LVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGF 94 (412)
Q Consensus 50 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 94 (412)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444445555666666666655555555555445555555443
No 335
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.34 E-value=1.1e+02 Score=23.00 Aligned_cols=61 Identities=7% Similarity=0.028 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 040580 151 VYSRAISCFGKQGQLELMENTLKEMVSRGFSV--DSATGNAFII-Y-----YSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 151 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~ 212 (412)
.|..-+..|.. |++-+|-++|++.-.....| ....|..||. . ..+.|+...|..++.+...
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444444 88888888888887664455 4566777777 2 2357888888888877654
No 336
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=40.95 E-value=54 Score=28.30 Aligned_cols=46 Identities=4% Similarity=-0.247 Sum_probs=20.3
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCHhh---HHHHHHHHHhccccchHHHHHHh
Q 040580 299 FSRMSMFWDLHLSLEHMKHESVGPDLVT---YGCVVDAYLDKRLGRNLDFGLSK 349 (412)
Q Consensus 299 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~ 349 (412)
.+..|+.+- .+.+.+.|..++... .+. +...++.|..+-+.-+++.
T Consensus 218 A~~~g~~~~----v~~Ll~~gad~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 218 AILINWEDV----AMRFVEMGIDVNMEDNEHTVP-LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTTTCHHH----HHHHHTTTCCTTCCCTTSCCH-HHHHHHTCCHHHHHHHHHH
T ss_pred HHHcCCHHH----HHHHHHcCCCCCCCCCCCCCH-HHHHHHhChHHHHHHHHHc
Confidence 334555543 333444555554321 222 2233345666555555544
No 337
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=40.79 E-value=76 Score=23.28 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=26.4
Q ss_pred HHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 040580 139 QVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFG 198 (412)
Q Consensus 139 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 198 (412)
.+++.|+.+++. -..++..+...+ .-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344455555543 112222222333 4456666666665554445444444444444444
No 338
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=40.20 E-value=1.8e+02 Score=25.01 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHH
Q 040580 47 CASLVEDLGRKKKPHLAHQLVNTVK 71 (412)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~ 71 (412)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4667788888888888888887775
No 339
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=39.95 E-value=3e+02 Score=27.57 Aligned_cols=92 Identities=11% Similarity=0.007 Sum_probs=48.3
Q ss_pred HHHHHHHHccCCH---HHHHHHHHHHhhc--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 040580 118 SDLMDAYGRIGCF---NEIISIIDQVSCR--NADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFII 192 (412)
Q Consensus 118 ~~li~~~~~~~~~---~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 192 (412)
..++...|+.|+. +.|.+.|++.... +...+|+.-..+...-.+.|..++-..+++.+... .+..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Confidence 3455555666553 4566666665432 12233444444444444556655555555555553 23333445666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 040580 193 YYSRFGSLTEMETAYGRLKR 212 (412)
Q Consensus 193 ~~~~~g~~~~a~~~~~~~~~ 212 (412)
+++...+.+...++++....
T Consensus 767 aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTC
T ss_pred HhCCCCCHHHHHHHHHHHhC
Confidence 66666666666666655543
No 340
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.87 E-value=1.1e+02 Score=22.69 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCC-cCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 040580 98 AQVVWEELLSSSFV-LSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADL 147 (412)
Q Consensus 98 a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 147 (412)
...+|..|...|+- --+..|......+-..|++.+|.++|+.-.+++-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 66777777776643 335566667777777777777777777776665544
No 341
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.74 E-value=81 Score=25.28 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=59.0
Q ss_pred HHHHHHHHHhc-----CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHccCCHHHHHHH
Q 040580 63 AHQLVNTVKSE-----GLLPDNSTLCALMLCYANNGFVLEAQVVWEELLSSSFVL-SVQVLSDLMDAYGRIGCFNEIISI 136 (412)
Q Consensus 63 a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 136 (412)
-..++++..+. ..+-|..-...-|. |+.. .+....+|..|...|+-- -+..|......+-..|++.+|.++
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 172 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEV 172 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44566655442 23456655554443 3332 357788999999987643 467788889999999999999999
Q ss_pred HHHHhhcCCCCCH
Q 040580 137 IDQVSCRNADLLP 149 (412)
Q Consensus 137 ~~~m~~~~~~~~~ 149 (412)
|+.-.+++-.|-.
T Consensus 173 y~~Gi~~~A~P~~ 185 (223)
T 4aez_C 173 YQKGKRMKAKPFL 185 (223)
T ss_dssp HHHHHHHTCBSHH
T ss_pred HHHHHHcCCccHH
Confidence 9998888766533
No 342
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=39.72 E-value=82 Score=26.71 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=16.2
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 040580 173 KEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID 218 (412)
Q Consensus 173 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 218 (412)
+.+.+.|..++..+ .+...++.|+.+ +.+.+.+.|-.||
T Consensus 290 ~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 290 ELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp HHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 33344555554433 222233444432 3344445554444
No 343
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=39.07 E-value=53 Score=21.91 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=35.3
Q ss_pred HHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 34 KIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEA 98 (412)
Q Consensus 34 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 98 (412)
.+++.+.+.++.+-...=..-+.....++|..+++.+.+. ....|..++.++.+.+....|
T Consensus 26 ~lld~L~~~~vlt~~~~e~I~~~~t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCHHHHH
Confidence 4555555554444443333333456667777777777654 356677777777666654444
No 344
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=37.92 E-value=26 Score=21.25 Aligned_cols=29 Identities=10% Similarity=-0.059 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 040580 166 ELMENTLKEMVSRGFSVDSATGNAFIIYY 194 (412)
Q Consensus 166 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 194 (412)
++|.+.|.+|++..-.++..||.-.|..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665543333455666666666
No 345
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=37.90 E-value=30 Score=24.64 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHhhcCCC-CCHHhHHHHHHHHH---hcCChHHHHHHHHHHHHCCCC
Q 040580 129 CFNEIISIIDQVSCRNAD-LLPEVYSRAISCFG---KQGQLELMENTLKEMVSRGFS 181 (412)
Q Consensus 129 ~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~ 181 (412)
.+++|.+.+..|++.-+. -.|..||..|..+. ..++. .++|..+.+.++.
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lg 95 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcC
Confidence 456666666666654433 24567777665553 22333 3445555555543
No 346
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.34 E-value=1.3e+02 Score=22.63 Aligned_cols=60 Identities=8% Similarity=-0.102 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCC--CHHhHHHHHH-HH-----HhcCChHHHHHHHHHHHh
Q 040580 47 CASLVEDLGRKKKPHLAHQLVNTVKSEGLLP--DNSTLCALML-CY-----ANNGFVLEAQVVWEELLS 107 (412)
Q Consensus 47 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~m~~ 107 (412)
|...+..|-. |++-+|.++|+..-...-.| ....|..||+ .. .+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333443333 77777777777775543344 3445666666 21 235677777766666544
No 347
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.26 E-value=1e+02 Score=20.94 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 040580 61 HLAHQLVNTVKSEGLLPDNSTLCALMLCYANNG 93 (412)
Q Consensus 61 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 93 (412)
-.|.++.++...-|+.|+..+...++..|...+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 345666666666677777766666666665555
No 348
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.18 E-value=1.3e+02 Score=22.48 Aligned_cols=59 Identities=7% Similarity=0.006 Sum_probs=28.5
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcccH
Q 040580 176 VSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRS--RHLIDKEGIRAVSFTYLKERKF 235 (412)
Q Consensus 176 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~ 235 (412)
.+.|++++. .-..++..+...++.-.|.++++.+.+. +...+..|.-.-+..+...|-+
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344555433 2233444444444455555555555554 4444555544445555555443
No 349
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=36.07 E-value=53 Score=19.84 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=11.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCC
Q 040580 162 QGQLELMENTLKEMVSRGFSVD 183 (412)
Q Consensus 162 ~g~~~~a~~~~~~m~~~g~~p~ 183 (412)
.|+++.|++.+-+|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 3455555555555554444443
No 350
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.49 E-value=1.6e+02 Score=23.23 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=41.6
Q ss_pred hHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCC
Q 040580 151 VYSRAISCFG---KQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGS-----LTEMETAYGRLKRSRH 215 (412)
Q Consensus 151 ~~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~ 215 (412)
.+--+|+++. +-.+++.|+-.+-+|.+.|-.|....-..++.+.-..|. +..|...++.....|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 4444555554 457888899889999888887776666666666665553 2334444555555554
No 351
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.05 E-value=95 Score=27.52 Aligned_cols=269 Identities=9% Similarity=0.008 Sum_probs=123.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHH--hHHHHHHHH
Q 040580 84 ALMLCYANNGFVLEAQVVWEELLSSSFVLSVQV--LSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPE--VYSRAISCF 159 (412)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~ 159 (412)
+.+...+..|+.+-+..+ .+.|..|+... ..+.+...+..|+.+-+.-+++ .+..++.. .-.+.+...
T Consensus 16 t~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 87 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCA 87 (437)
T ss_dssp CHHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHH
T ss_pred CHHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHH
Confidence 355566778887655544 45565554321 2334555667788776555554 33332211 112334444
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcc
Q 040580 160 GKQGQLELMENTLKEMVSRGFSVDS---ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLID---KEGIRAVSFTYLKER 233 (412)
Q Consensus 160 ~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~ 233 (412)
+..|+.+-+. .+.+.|..|+. ...+ .+...++.|+.+.+..+++ .+..++ ..-. +.+...+..|
T Consensus 88 ~~~g~~~~v~----~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g 157 (437)
T 1n11_A 88 ARIGHTNMVK----LLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYG 157 (437)
T ss_dssp HHHTCHHHHH----HHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTT
T ss_pred HHCCCHHHHH----HHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcC
Confidence 5667765444 44444555432 2233 3444566777766555553 343221 1122 2344445667
Q ss_pred cHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHH--HHHHHHHHccCChhHHHHH
Q 040580 234 KFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTF--NIRAVAFSRMSMFWDLHLS 311 (412)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~ 311 (412)
+.+-+.-+++.- ......+..-.+ .+...+..|+.+ +++.+.+.|..|+...+ .+.+...+..|+.+-+..
T Consensus 158 ~~~~v~~Ll~~g-~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~- 230 (437)
T 1n11_A 158 KVRVAELLLERD-AHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS- 230 (437)
T ss_dssp CHHHHHHHHHTT-CCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHH-
T ss_pred CHHHHHHHHhCC-CCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH-
Confidence 777666666532 111111111111 233334566654 44455556655543221 123344455666654443
Q ss_pred HHHHHhCCCCCCHh---hHHHHHHHHHhccccchHHHHHHhccCCCCCCcccHHHHHHHHhcCCcccHHHHHHH
Q 040580 312 LEHMKHESVGPDLV---TYGCVVDAYLDKRLGRNLDFGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382 (412)
Q Consensus 312 ~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~~~~~a~~~~~~ 382 (412)
+.+.|..++.. -.+.| ...+..|..+-+..+++.-......+..-.+.+..+...|..+- .+.+.+
T Consensus 231 ---Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~-~~~Ll~ 299 (437)
T 1n11_A 231 ---LLQYGGSANAESVQGVTPL-HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV-ADVLIK 299 (437)
T ss_dssp ---HHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH-HHHHHH
T ss_pred ---HHHcCCCCCCCCCCCCCHH-HHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHH-HHHHHh
Confidence 44455444322 22233 33445566554444443321111122222344444444466553 444433
No 352
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=34.89 E-value=66 Score=19.91 Aligned_cols=46 Identities=9% Similarity=-0.060 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 040580 46 DCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANN 92 (412)
Q Consensus 46 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 92 (412)
.++.++..+++..-.++++..+++..+.| ..+..+|-.-.+.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 35566666666666777777777777776 44666666555555443
No 353
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.78 E-value=1.7e+02 Score=23.16 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=40.0
Q ss_pred HHHHHHhc---CCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCCh-----hHHHHHHHHHHhCCCC
Q 040580 259 LLLLSYAG---NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF-----WDLHLSLEHMKHESVG 321 (412)
Q Consensus 259 ~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-----~~a~~~~~~m~~~g~~ 321 (412)
-+|+++.+ -.+++.|+-.+.+|.+.|-.|.-..-..++.+....|.- ..|...++....-|.+
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34555544 367888888888888888777766666677776666643 2344444554555653
No 354
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.75 E-value=1.9e+02 Score=23.49 Aligned_cols=238 Identities=13% Similarity=-0.028 Sum_probs=0.0
Q ss_pred cCCchhhccccccccccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCCCCHHhHH
Q 040580 8 LHGSFKFKRFNVPSHQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKK----PHLAHQLVNTVKSEGLLPDNSTLC 83 (412)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~g~~p~~~~~~ 83 (412)
+..........-+..+.+.|..+....+.+.+..++...-...+.++.+.|. ....+.++..+... .++...-.
T Consensus 32 L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~ 109 (280)
T 1oyz_A 32 LDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRA 109 (280)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHH
Q ss_pred HHHHHHHhcCC-----hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 040580 84 ALMLCYANNGF-----VLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158 (412)
Q Consensus 84 ~ll~~~~~~~~-----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (412)
..+.++.+.+. ...+...+..+.+ .++..+-...+.++.+.|+.+....+.+.+ -.+++.+-...+.+
T Consensus 110 ~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l----~d~~~~vr~~a~~a 182 (280)
T 1oyz_A 110 TAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKATIPLLINLL----KDPNGDVRNWAAFA 182 (280)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---CCHHHHHHHH----TCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----cCCCHHHHHHHHHH
Q ss_pred HHhcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHH
Q 040580 159 FGKQG-QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFM 237 (412)
Q Consensus 159 ~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 237 (412)
+...| ....+...+..+.+. ++...-...+.++.+.|+......+...+.. ++ +-...+.++.+.|. .+
T Consensus 183 L~~~~~~~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~-~~ 252 (280)
T 1oyz_A 183 ININKYDNSDIRDCFVEMLQD---KNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGD-KT 252 (280)
T ss_dssp HHHHTCCCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCC-GG
T ss_pred HHhhccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCc-hh
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHhc
Q 040580 238 LGEFLRDVGLGRKDLGNLLWNLLLLSYAG 266 (412)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 266 (412)
+...+.++-....+. ..-...+....+
T Consensus 253 ~~~~L~~~l~~~~~~--~~~~~~~~~l~~ 279 (280)
T 1oyz_A 253 LLPVLDTMLYKFDDN--EIITSAIDKLKR 279 (280)
T ss_dssp GHHHHHHHHTTSSCC--HHHHHHHHHHTC
T ss_pred hhHHHHHHHhcCCCc--HHHHHHHHHhhc
No 355
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=33.45 E-value=39 Score=24.00 Aligned_cols=72 Identities=8% Similarity=-0.067 Sum_probs=45.3
Q ss_pred cccCCCChHHHHHHHHHhhccChhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 040580 22 HQTHPKNGDLARKIIRYRKQEGFVDCASLVEDLGRKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLCYANNGFVLEAQVV 101 (412)
Q Consensus 22 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 101 (412)
.|.+.++|++++.+.+ .-..|.-.|...+..++.+-|.++++-..+.| +...|.+.+..|...=+++-++++
T Consensus 15 ~ykkN~rw~qSI~L~K-----kDkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 15 VPRGSHMWKQSVELAK-----KDSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSSCCCCSSCCCCCS-----CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred hhhccccHHHHHHHHH-----hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3455555555544322 12234455666677788888888888877766 677777777777777666666543
No 356
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=31.91 E-value=44 Score=27.40 Aligned_cols=54 Identities=17% Similarity=0.038 Sum_probs=27.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCc-------CHHHHHHHHHHHH--ccCCHHHHHHHHHH
Q 040580 86 MLCYANNGFVLEAQVVWEELLSSSFVL-------SVQVLSDLMDAYG--RIGCFNEIISIIDQ 139 (412)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~m~~~~~~~-------~~~~~~~li~~~~--~~~~~~~a~~~~~~ 139 (412)
+...++.|+.+.+..+++...+.+... +..-++.|..++. +.|+.+-+.-+++.
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 334456677777777776666554322 2233444444443 23555555444444
No 357
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.30 E-value=1.9e+02 Score=22.64 Aligned_cols=61 Identities=11% Similarity=0.015 Sum_probs=38.4
Q ss_pred HHHHHhc---CCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCCh-----hHHHHHHHHHHhCCC
Q 040580 260 LLLSYAG---NFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF-----WDLHLSLEHMKHESV 320 (412)
Q Consensus 260 li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-----~~a~~~~~~m~~~g~ 320 (412)
+|+++.+ -.+++.|+-.+.+|.+.|-.|.-..-..++.+....|.- ..|...++....-|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 4555544 367888888888888888777666666666666666643 234444454455554
No 358
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=30.02 E-value=1.5e+02 Score=21.29 Aligned_cols=75 Identities=8% Similarity=-0.019 Sum_probs=31.4
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHh---HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcc
Q 040580 265 AGNFKMKSLQREFMRMSEAGFHPDLT---TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDL---VTYGCVVDAYLDKR 338 (412)
Q Consensus 265 ~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~ 338 (412)
+..|+.+-+. .+.+.|..|+.. ..+.+..+ +..|+.+-+. .+.+.|..|+. .-.+.+ ...++.|
T Consensus 43 ~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L-~~A~~~~ 112 (156)
T 1bd8_A 43 MMFGSTAIAL----ELLKQGASPNVQDTSGTSPVHDA-ARTGFLDTLK----VLVEHGADVNVPDGTGALPI-HLAVQEG 112 (156)
T ss_dssp SCTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHHH----HHHHTTCCSCCCCTTSCCHH-HHHHHHT
T ss_pred HHcCCHHHHH----HHHHCCCCCCCcCCCCCCHHHHH-HHcCcHHHHH----HHHHcCCCCCCcCCCCCcHH-HHHHHhC
Confidence 5556655333 333445444422 22333333 3445554333 33345544432 222223 3333455
Q ss_pred ccchHHHHHHh
Q 040580 339 LGRNLDFGLSK 349 (412)
Q Consensus 339 ~~~~a~~~~~~ 349 (412)
+.+-+.-+++.
T Consensus 113 ~~~~v~~Ll~~ 123 (156)
T 1bd8_A 113 HTAVVSFLAAE 123 (156)
T ss_dssp CHHHHHHHHTT
T ss_pred hHHHHHHHHhc
Confidence 55444444443
No 359
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.02 E-value=1.7e+02 Score=22.80 Aligned_cols=180 Identities=11% Similarity=-0.027 Sum_probs=82.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 040580 190 FIIYYSRFGSLTEMETAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFK 269 (412)
Q Consensus 190 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 269 (412)
.+...++.|+.+....++..-...-..++..-.+. +...+..|+.+-+..+++. +......|..-++.+. ..+..|+
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~-~A~~~~~ 85 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLH-IAASAGX 85 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHH-HHHHHTC
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHH-HHHHcCH
Confidence 35566778999888887765332211223333333 3344566777766666654 2211111212222332 2234455
Q ss_pred hHHHHHHHHHHHHcCCCCcHh---HHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHhccccchHH
Q 040580 270 MKSLQREFMRMSEAGFHPDLT---TFNIRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVT--YGCVVDAYLDKRLGRNLD 344 (412)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~ 344 (412)
.+ +++.+.+.|..++.. ..+.+ ...+..|+.+-+. .+.+.|..|+... -.+.+...+..|+.+-+.
T Consensus 86 ~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 86 DE----IVKALLVKGAHVNAVNQNGCTPL-HYAASKNRHEIAV----MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp HH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HH----HHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 54 445555666655432 23333 3444556665443 4445666554322 112333444556665444
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHhcCCcccHHHHHHH
Q 040580 345 FGLSKMNLDDSPVVSTDPYVFEAFGKGDFHSSSEAFLE 382 (412)
Q Consensus 345 ~~~~~m~~~~~p~~~~~~~li~~~~~~~~~~a~~~~~~ 382 (412)
.+++.-..-..++..-.+.+..+...|+.+ ..+.+.+
T Consensus 157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-~v~~Ll~ 193 (231)
T 3aji_A 157 ILLFYKASTNIQDTEGNTPLHLACDEERVE-EAKFLVT 193 (231)
T ss_dssp HHHHTTCCSCCCCTTSCCHHHHHHHTTCHH-HHHHHHH
T ss_pred HHHhcCCCccccCCCCCCHHHHHHHCCCHH-HHHHHHH
Confidence 444422111112222233444444445543 4444444
No 360
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.82 E-value=82 Score=22.55 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=28.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccc
Q 040580 295 RAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341 (412)
Q Consensus 295 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 341 (412)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-..
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 44445445555567777777766665556666656666666665443
No 361
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.79 E-value=4.4e+02 Score=26.40 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=40.8
Q ss_pred HHHHHhcCC---hHHHHHHHHHHHhCC----CCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 040580 86 MLCYANNGF---VLEAQVVWEELLSSS----FVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISC 158 (412)
Q Consensus 86 l~~~~~~~~---~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 158 (412)
+...|..|. .+.|.+.|+.....+ ++||.. ..+...-.+.|..++-..++++..... ++.--..++.+
T Consensus 693 l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~a 767 (909)
T 4fke_A 693 ISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRSA 767 (909)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHHH
Confidence 334444443 334555555544321 344432 122222334455555555555554432 23334456666
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 040580 159 FGKQGQLELMENTLKEMVS 177 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~ 177 (412)
++...+.+...++++....
T Consensus 768 L~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 768 LACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HTTCCCHHHHHHHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHHhC
Confidence 6666666666666555543
No 362
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.55 E-value=78 Score=23.02 Aligned_cols=48 Identities=15% Similarity=0.085 Sum_probs=29.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhccccc
Q 040580 294 IRAVAFSRMSMFWDLHLSLEHMKHESVGPDLVTYGCVVDAYLDKRLGR 341 (412)
Q Consensus 294 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 341 (412)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-..
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 455555555555567777777766666666666656666666665543
No 363
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=29.49 E-value=43 Score=28.91 Aligned_cols=46 Identities=9% Similarity=0.074 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 040580 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESV 320 (412)
Q Consensus 275 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 320 (412)
++++.+.+.|+.|...++.-++..|++.=.++.+.++|+.+...|.
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~ 259 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE 259 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC
Confidence 4667778889999999999899999888888999999999887763
No 364
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.29 E-value=1.3e+02 Score=23.53 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=29.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 040580 159 FGKQGQLELMENTLKEMVSRGFSVDSAT--GNAFIIYYSRFGSLTEMETAYGRLKRSRHLI 217 (412)
Q Consensus 159 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 217 (412)
.+..|+.+- ++.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.|..+
T Consensus 128 A~~~~~~~~----v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 128 AACVGSEEI----VRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHcCCHHH----HHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 344555443 344445555543211 1133445566777777777777777776543
No 365
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.45 E-value=2.2e+02 Score=22.61 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCCCCHH-------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHH
Q 040580 60 PHLAHQLVNTVKSEGLLPDNS-------TLCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNE 132 (412)
Q Consensus 60 ~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 132 (412)
.+.|+.+|+.+...-..|+.. .-...+-.|.+.|.+++|.+++++..... +.+...-+.|+..-.+.+....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~-~s~~kLr~kL~~II~~Kd~~H~ 166 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD-PTTQKLRNDLLNIIREKNLAHP 166 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC-GGGHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC-CCchHHHHHHHHHHhccCcccH
Q ss_pred HHHHH
Q 040580 133 IISII 137 (412)
Q Consensus 133 a~~~~ 137 (412)
.++-|
T Consensus 167 ~lqnF 171 (235)
T 3bu8_A 167 VIQNF 171 (235)
T ss_dssp HHHTC
T ss_pred HHHhc
No 366
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.42 E-value=1.8e+02 Score=22.61 Aligned_cols=20 Identities=0% Similarity=-0.266 Sum_probs=9.4
Q ss_pred hcCCChHHHHHHHHHHHHcC
Q 040580 265 AGNFKMKSLQREFMRMSEAG 284 (412)
Q Consensus 265 ~~~g~~~~a~~~~~~m~~~~ 284 (412)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34444444444444444444
No 367
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=27.37 E-value=86 Score=22.96 Aligned_cols=117 Identities=7% Similarity=-0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHhHHH--HHHHHHH
Q 040580 223 RAVSFTYLKERKFFMLGEFLRDVGLGRKDLGNLLWNLLLLSYAGNFKMKSLQREFMRMSEAGFHPDLTTFN--IRAVAFS 300 (412)
Q Consensus 223 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~ 300 (412)
...+...++.|+.+.+..+++.-.......+..-++.|..+..... .++++.+.+.|..|+..... +.+...+
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR-----VSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcCh-----HHHHHHHHhcCCCCCccCCCCCCHHHHHH
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhccccchHHHHHH
Q 040580 301 RMSMFWDLHLSLEHMKHESVGPDLVTYG--CVVDAYLDKRLGRNLDFGLS 348 (412)
Q Consensus 301 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~~~~ 348 (412)
..|+.+ +.+.+.+.|..++..... +.+...+..|+.+-+..+++
T Consensus 84 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 129 (165)
T 3twr_A 84 SYGHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129 (165)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
No 368
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.98 E-value=29 Score=25.35 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=6.3
Q ss_pred hcCCChhHHHHHHHH
Q 040580 55 GRKKKPHLAHQLVNT 69 (412)
Q Consensus 55 ~~~~~~~~a~~~~~~ 69 (412)
++.|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 334444444444433
No 369
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.95 E-value=3.5e+02 Score=24.31 Aligned_cols=62 Identities=11% Similarity=-0.038 Sum_probs=41.6
Q ss_pred HHHHHHh---cCCChHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCCh-----hHHHHHHHHHHhCCC
Q 040580 259 LLLLSYA---GNFKMKSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMF-----WDLHLSLEHMKHESV 320 (412)
Q Consensus 259 ~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-----~~a~~~~~~m~~~g~ 320 (412)
.+++++. +..+.+.|+..+.+|.+.|..|....-..+..+....|.- ..|...++....-|.
T Consensus 257 d~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 257 DLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 3444443 3578899999999999988888776666777777666653 234445555555665
No 370
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=26.21 E-value=1.6e+02 Score=25.13 Aligned_cols=43 Identities=5% Similarity=0.023 Sum_probs=20.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 040580 172 LKEMVSRGFSVDSATGNAFIIYYSRFGSLTEMETAYGRLKRSR 214 (412)
Q Consensus 172 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 214 (412)
++.+.+.|+.|...++.-++..+++.=.++.+.++|+.+...|
T Consensus 211 ~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g 253 (331)
T 3qye_A 211 YNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQG 253 (331)
T ss_dssp HHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCC
Confidence 3344444555544444445544444444555555555554444
No 371
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.67 E-value=3.7e+02 Score=24.16 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=14.9
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 040580 112 LSVQVLSDLMDAYGRIGCFNEIISIIDQVS 141 (412)
Q Consensus 112 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 141 (412)
.+......++.. -.|+...+..+++.+.
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMA 219 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 344455555444 3466666666666554
No 372
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.35 E-value=1.5e+02 Score=19.87 Aligned_cols=19 Identities=5% Similarity=-0.144 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhcCCChHHH
Q 040580 255 LLWNLLLLSYAGNFKMKSL 273 (412)
Q Consensus 255 ~~~~~li~~~~~~g~~~~a 273 (412)
.+|..++.++...|...-|
T Consensus 69 ~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 69 QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp THHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHcCcHHHH
Confidence 4555555555544444333
No 373
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=25.28 E-value=2.8e+02 Score=25.86 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 040580 96 LEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELM 168 (412)
Q Consensus 96 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 168 (412)
+......++++.+=.--+..--..++..|.+.|-.+.|.++++.+-.+-+. +...| .-+..|+++|+++.+
T Consensus 498 ~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 498 SAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred hHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 334444444443321223344555566666666666666666655443321 11233 444455566655543
No 374
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=25.15 E-value=58 Score=23.16 Aligned_cols=52 Identities=6% Similarity=-0.056 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHH
Q 040580 82 LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISI 136 (412)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 136 (412)
|.-.|...+.+++.+-|+++++..++.| +...|.+.+-.|-..=++|-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3345666777888888888888888766 667787888888777777776665
No 375
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.93 E-value=2.5e+02 Score=21.97 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=17.4
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 040580 56 RKKKPHLAHQLVNTVKSEGLLPDNSTLCALMLC 88 (412)
Q Consensus 56 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 88 (412)
+..+++.|+-.+.+|.+.|-.|.-..=..++-+
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345666666666666666644443333333333
No 376
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.86 E-value=82 Score=25.33 Aligned_cols=21 Identities=24% Similarity=0.082 Sum_probs=9.5
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 040580 89 YANNGFVLEAQVVWEELLSSS 109 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~ 109 (412)
.++.|+.+.+..+++.+.+.|
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g 29 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNS 29 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 344445544444444444433
No 377
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.38 E-value=84 Score=24.59 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=15.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 040580 85 LMLCYANNGFVLEAQVVWEELLS 107 (412)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~m~~ 107 (412)
.+-.|.+.|.+++|.+++++...
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHccchHHHHHHHHHHhc
Confidence 34567777777777777777544
No 378
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=24.12 E-value=1.1e+02 Score=17.65 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=12.8
Q ss_pred CChhHHHHHHHHHHhcCCCC
Q 040580 58 KKPHLAHQLVNTVKSEGLLP 77 (412)
Q Consensus 58 ~~~~~a~~~~~~m~~~g~~p 77 (412)
+++.+|+++++.+.+.|--|
T Consensus 7 RDv~RaiELle~lq~sgevp 26 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVN 26 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSST
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 35667777777777666444
No 379
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=23.58 E-value=2.5e+02 Score=21.54 Aligned_cols=54 Identities=19% Similarity=-0.055 Sum_probs=33.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC----------------cC-HHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 040580 89 YANNGFVLEAQVVWEELLSSSFV----------------LS-VQVLSDLMDAYGRIGCFNEIISIIDQVSC 142 (412)
Q Consensus 89 ~~~~~~~~~a~~~~~~m~~~~~~----------------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 142 (412)
+-+.+++..|...++.+....+. .| ...|+.+...|...|+.++|.+.|..--.
T Consensus 72 y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 72 YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 45566666666666666643332 12 23456666777777888888887765533
No 380
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=23.51 E-value=1.2e+02 Score=25.72 Aligned_cols=47 Identities=6% Similarity=0.026 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 040580 275 REFMRMSEAGFHPDLTTFNIRAVAFSRMSMFWDLHLSLEHMKHESVG 321 (412)
Q Consensus 275 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 321 (412)
++++.+.+.|+.|...++.-++..+++.=..+.+.++|+.+...|..
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~ 221 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLN 221 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcH
Confidence 46667777888898888888888888877788999999988877754
No 381
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.31 E-value=2e+02 Score=22.84 Aligned_cols=57 Identities=9% Similarity=-0.022 Sum_probs=33.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhcCCCCCH-------HhHHHHHHHHHhc---CChHHHHHHHHHHHH
Q 040580 120 LMDAYGRIGCFNEIISIIDQVSCRNADLLP-------EVYSRAISCFGKQ---GQLELMENTLKEMVS 177 (412)
Q Consensus 120 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 177 (412)
.+...++.|+.+.+..+++.+.+.+..++. .-.+.|..+ +.. |+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCc
Confidence 344556778888777777777666654443 233344333 334 777776666665443
No 382
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=23.05 E-value=2.2e+02 Score=20.64 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=7.0
Q ss_pred HHhcCCHHHHHHHHHH
Q 040580 194 YSRFGSLTEMETAYGR 209 (412)
Q Consensus 194 ~~~~g~~~~a~~~~~~ 209 (412)
.++.|+.+-+.-+.+.
T Consensus 142 A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 142 AVALGYRSVQQVIESH 157 (167)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHH
Confidence 3344554444444433
No 383
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=22.54 E-value=2.4e+02 Score=20.88 Aligned_cols=148 Identities=8% Similarity=0.032 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcccHHHHHHH
Q 040580 164 QLELMENTLKEMVSRGFSVDSATGNAFIIYYSRF-GSLTEMETAYGRLKRSR-HLIDKEGIRAVSFTYLKERKFFMLGEF 241 (412)
Q Consensus 164 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~ 241 (412)
++.+..+.|+.+-..|.- +..-+..++..+... ........+|+.+-..| -..+..-+..++.........++...+
T Consensus 19 ~i~~l~~~fd~~d~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~ 97 (183)
T 1s6c_A 19 ELQVLYRGFKNEXPSGVV-NEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWT 97 (183)
T ss_dssp HHHHHHHHHHHHCTTSEE-CHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcC-CHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHH
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcC----CCh-----------HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHccCChh
Q 040580 242 LRDVGLGRKDLGNLLWNLLLLSYAGN----FKM-----------KSLQREFMRMSEAGFHPDLTTFNIRAVAFSRMSMFW 306 (412)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~~~~~----g~~-----------~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 306 (412)
|+.+...+... .++.-+...+... |.. +.+..+|+.+-.. .-...+|.-++..+.+...+-
T Consensus 98 f~~~D~d~~G~--i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d--~dG~i~~~Ef~~~~~~~~~~~ 173 (183)
T 1s6c_A 98 FNLYDINKDGY--INKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKN--KDGIVTLDEFLESXQEDDNIM 173 (183)
T ss_dssp HHHHCTTCSSC--EEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTT--CSSEECHHHHHHHTTSCCHHH
T ss_pred HHHhCCCCCCe--EcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCC--CCCcEeHHHHHHHHhcChHHH
Q ss_pred HHHHHHHHHH
Q 040580 307 DLHLSLEHMK 316 (412)
Q Consensus 307 ~a~~~~~~m~ 316 (412)
+.+..++.+.
T Consensus 174 ~~l~~~d~~l 183 (183)
T 1s6c_A 174 RSLQLFQNVM 183 (183)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHhhccC
No 384
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=22.47 E-value=2.7e+02 Score=23.82 Aligned_cols=46 Identities=7% Similarity=-0.086 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCC
Q 040580 205 TAYGRLKRSRHLIDKEGIRAVSFTYLKERKFFMLGEFLRDVGLGRK 250 (412)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 250 (412)
+++..+.+.|+.|...++..++..+++.=.++.+..+++.+-..+.
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~ 275 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPD 275 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCC
Confidence 3455555666666666666666666666666666676666655443
No 385
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.36 E-value=3.8e+02 Score=22.84 Aligned_cols=53 Identities=6% Similarity=-0.123 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 040580 164 QLELMENTLKEMVSRGFSVDS--ATGNAFIIYYSRFGSLTEMETAYGRLKRSRHL 216 (412)
Q Consensus 164 ~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 216 (412)
+..+.+++-.-+-.-.++|.. -+....|..+.+.+++..|..+-+++.+.+..
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 334445555555555566543 34556677778888888888888888877643
No 386
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.59 E-value=1.3e+02 Score=25.80 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=34.9
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCCHHh--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 040580 52 EDLGRKKKPHLAHQLVNTVKSEGLLPDNST--LCALMLCYANNGFVLEAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGC 129 (412)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 129 (412)
...+..|+.+.+..++ +.|..++... -.+.+...+..|+.+-+..+ .+.|..++...-.+.+...+..|+
T Consensus 25 ~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 25 HVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYL----ASVGEVHSLWHGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHH----HHHCCCCCCBTTBCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHH----HHCCCCccccCCCCHHHHHHHcCC
Confidence 3334556654444433 3454443221 11233444555665443333 333332222111223333445566
Q ss_pred HHHHHHHHHHHhh
Q 040580 130 FNEIISIIDQVSC 142 (412)
Q Consensus 130 ~~~a~~~~~~m~~ 142 (412)
.+-+..+++....
T Consensus 97 ~~~v~~Ll~~~~~ 109 (364)
T 3ljn_A 97 TDLVVALVEGAKE 109 (364)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 6666555555433
No 387
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.30 E-value=4.1e+02 Score=24.80 Aligned_cols=75 Identities=12% Similarity=0.036 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 040580 128 GCFNEIISIIDQVSCRNADLLPEVYSRAISCFGKQGQLELMENTLKEMVSRGFSVDSATGNAFIIYYSRFGSLTEME 204 (412)
Q Consensus 128 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 204 (412)
.+........+++..+-..-+.+--..++..|.+.|-.+.|.++++.+-.+-+. +...+ ..+..|++.|+++.+.
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 445556667777765532233447788999999999999999999998776443 44556 5667889999887653
No 388
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.05 E-value=2.9e+02 Score=20.96 Aligned_cols=48 Identities=6% Similarity=-0.049 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 040580 97 EAQVVWEELLSSSFVLSVQVLSDLMDAYGRIGCFNEIISIIDQVSCRNA 145 (412)
Q Consensus 97 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 145 (412)
.+..+++.+.+.|+--|..--...++...+.|.+. ...+-+++.++|+
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI 98 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGI 98 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCC
Confidence 34455666666665555544455555554443221 2345555666654
Done!