BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040581
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 241 bits (615), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 214/412 (51%), Gaps = 59/412 (14%)
Query: 24 SVAIPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDXXXXXXXXXXXXXXXX 83
++ +PV KD STLQYV I+ V NLV+DLGG WVDCD
Sbjct: 8 ALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPVRCRTS 67
Query: 84 XXIQCSRSG--------KSPVPGNGSDTTTNTCGVFTQNGISGLVTTGDLAEDTIAVRSE 135
QCS SG P PG NTCGVF +N + T G++AED ++V S
Sbjct: 68 ---QCSLSGSIACGDCFNGPRPG----CNNNTCGVFPENPVINTATGGEVAEDVVSVEST 120
Query: 136 LEDPS--ITAVDQFLFSCAPTFXXXXXXXXXXXXXXXXXXPISLPSQLATGIGHQRKFFM 193
S + V +F+FSCAPT I+LPSQ A+ +RKF M
Sbjct: 121 DGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAM 180
Query: 194 CLS---SSNGVVLSHHTSTTKLP--------LMYTPLIGK-------------SQDYFIN 229
CLS SSN V++ + T LP L YTPL+ S +YFI
Sbjct: 181 CLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG 240
Query: 230 VKSIKINGNP-------LSVTIEGL--TKLSTIVPYATMESSIYXXXXXXXXXXXXXXSR 280
VKSIKIN LS++ GL TK+STI PY +E+SIY +R
Sbjct: 241 VKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESA--AR 298
Query: 281 DMSVVAPVAPFSLCFSSKGFN----GSAVPVIDFVLQSEMVKWRFYGSNSMVKVNEEVVC 336
+++ VA VAPF CFS+ G +VP ID VLQSE V W GSNSMV +N+ VVC
Sbjct: 299 NITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVC 358
Query: 337 LGFLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFS-TLRG--TCCSDFS 385
LG +DGGS+L +SIV+GG QLEDN++ FDL TS +GFS TL G T C++F+
Sbjct: 359 LGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFN 410
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 241 bits (615), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 214/412 (51%), Gaps = 59/412 (14%)
Query: 24 SVAIPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDXXXXXXXXXXXXXXXX 83
++ +PV KD STLQYV I+ V NLV+DLGG WVDCD
Sbjct: 8 ALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPVRCRTS 67
Query: 84 XXIQCSRSG--------KSPVPGNGSDTTTNTCGVFTQNGISGLVTTGDLAEDTIAVRSE 135
QCS SG P PG NTCGVF +N + T G++AED ++V S
Sbjct: 68 ---QCSLSGSIACGDCFNGPRPG----CNNNTCGVFPENPVINTATGGEVAEDVVSVEST 120
Query: 136 LEDPS--ITAVDQFLFSCAPTFXXXXXXXXXXXXXXXXXXPISLPSQLATGIGHQRKFFM 193
S + V +F+FSCAPT I+LPSQ A+ +RKF M
Sbjct: 121 DGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAM 180
Query: 194 CLS---SSNGVVLSHHTSTTKLP--------LMYTPLIGK-------------SQDYFIN 229
CLS SSN V++ + T LP L YTPL+ S +YFI
Sbjct: 181 CLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG 240
Query: 230 VKSIKINGNP-------LSVTIEGL--TKLSTIVPYATMESSIYXXXXXXXXXXXXXXSR 280
VKSIKIN LS++ GL TK+STI PY +E+SIY +R
Sbjct: 241 VKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESA--AR 298
Query: 281 DMSVVAPVAPFSLCFSSKGFN----GSAVPVIDFVLQSEMVKWRFYGSNSMVKVNEEVVC 336
+++ VA VAPF CFS+ G +VP ID VLQSE V W GSNSMV +N+ VVC
Sbjct: 299 NITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVC 358
Query: 337 LGFLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFS-TLRG--TCCSDFS 385
LG +DGGS+L +SIV+GG QLEDN++ FDL TS +GFS TL G T C++F+
Sbjct: 359 LGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFN 410
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 177/400 (44%), Gaps = 46/400 (11%)
Query: 22 VNSVAIPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDXXXXXXXXXXXXXX 81
+N V +PV D ST + A + + + +++DL G WV+C+
Sbjct: 7 INLVVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCH 66
Query: 82 XXXXIQCSRSGK----SPVPGNGSDTTTNTCGVFTQNGISGLVTTGDLAEDTIAVR---- 133
QCSR+ S + NTCG+ + N I+ G+L ED +A+
Sbjct: 67 ST---QCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQG 123
Query: 134 SELEDPSITAVDQFLFSCAPTFXXXXXXXXXXXXXXXX-XXPISLPSQLATGIGHQRKFF 192
S + + V QFLFSCAP+F PISLP+QLA+ G QR+F
Sbjct: 124 STQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFT 183
Query: 193 MCLS---SSNGVVL---------SHHTSTTKLPLMYTPL-IGKSQDYFINVKSIKING-- 237
CLS +S G ++ L +TPL I +Y + V SI+IN
Sbjct: 184 TCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHS 243
Query: 238 ----NPLSVTI----EGLTKLSTIVPYATMESSIYXXXXXXXXXXXXXXSRDMSVVAPVA 289
N +S TI G T +ST P+ ++ S+Y ++ V VA
Sbjct: 244 VFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQ----VKSVA 299
Query: 290 PFSLCFSSKGFNGSAVPVIDFVL-QSEMVKWRFYGSNSMVKVNEEVVCLGFLDGGSDLTS 348
PF LCF+S N A P +D V+ + WR G + MV+ V CLG ++GG +
Sbjct: 300 PFGLCFNSNKIN--AYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRA 357
Query: 349 SIVLGGFQLEDNVMDFDLGTSMLGFST----LRGTCCSDF 384
I LG QLE+N++ FDL S +GFST G C+D
Sbjct: 358 EITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVKCADL 397
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 156/386 (40%), Gaps = 31/386 (8%)
Query: 25 VAIPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDXXXXXXXXXXXXXXXXX 84
V PV KD +T Y H G S LVLD+ G L W C+
Sbjct: 5 VLAPVTKDTATSLYTIPFHDGAS-----LVLDVAGLLVWSTCEGGQSPAEIACSSPTCLL 59
Query: 85 XIQCSRSGKSPVPGNGSDTTTNTCGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAV 144
G P P GSD C + N ++G G L A + + ++ V
Sbjct: 60 ANAYPAPG-CPAPSCGSDRHDKPCTAYPSNPVTGACAAGSLFHTRFAANTTDGNKPVSEV 118
Query: 145 D-QFLFSCAPTFXXXXXXXXXXXXXXXXXXPISLPSQLATGIGHQRKFFMCLSSSNGVVL 203
+ + L +CAP+ ++LPSQ+A+ KF +CL + V
Sbjct: 119 NVRVLAACAPSKLLASLPRGSTGVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVA 178
Query: 204 SHHTSTTKLP-----LMYTPLIGK--SQDYFINVKSIKINGNPLSVTIEGLTK----LST 252
P + YTPL+ K S ++I+ +SIK+ + ++ L LST
Sbjct: 179 IFGGGPLPWPQFTQSMDYTPLVAKGGSPAHYISARSIKVENTRVPISERALATGGVMLST 238
Query: 253 IVPYATMESSIYXXXXXXXXXXXXXXSRDMSVVA----PVAPFSLCFSSK--GFNGSAVP 306
+PY + +Y + + VA PVAPF LC+ +K G N
Sbjct: 239 RLPYVLLRRDVYRPLVDAFTKALAAQPANGAPVARAVKPVAPFELCYDTKTLGNNPGGYW 298
Query: 307 VIDFVLQSEM-VKWRFYGSNSMVKVNEEVVCLGFL-----DGGSDLTSSIVLGGFQLEDN 360
V + +L+ + W G NSMV V C+ F+ D G +++LGG Q+ED
Sbjct: 299 VPNVLLELDGGSDWAMTGKNSMVDVKPGTACVAFVEMKGVDAGDGSAPAVILGGAQMEDF 358
Query: 361 VMDFDLGTSMLGFSTLRG-TCCSDFS 385
V+DFD+ LGF L T CS F+
Sbjct: 359 VLDFDMEKKRLGFLRLPHFTGCSSFN 384
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 146/377 (38%), Gaps = 32/377 (8%)
Query: 25 VAIPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDXXXXXXXXXXXXXXXXX 84
V PV KD +T Y H G S LVLD+ GPL W CD
Sbjct: 3 VLAPVTKDPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLL 57
Query: 85 XIQCSRSGKSPVPGNGSDTTTNTCGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAV 144
G P P GSD C + N +SG G L+ + ++ V
Sbjct: 58 ANAYPAPG-CPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKV 116
Query: 145 D-QFLFSCAPTFXXXXXXXXXXXXXXXXXXPISLPSQLATGIGHQRKFFMCLSSSNGVVL 203
+ L +CAP+ ++LP+Q+A+ +F +CL + V
Sbjct: 117 NVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVA 176
Query: 204 SHHTSTTKLP-----LMYTPLI--GKSQDYFINVKSIKINGN----PLSVTIEGLTKLST 252
P + YTPL+ G S ++I+ +SI + P G LST
Sbjct: 177 IFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLST 236
Query: 253 IVPYATMESSIYXXXXXXXXXXXXXXSRDMSVVA----PVAPFSLCFSSK----GFNGSA 304
+PY + +Y + + VA VAPF +C+ +K G A
Sbjct: 237 RLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA 296
Query: 305 VPVIDFVLQSEMVKWRFYGSNSMVKVNEEVVCLGFLD-----GGSDLTSSIVLGGFQLED 359
VP + L W G NSMV V + C+ F++ G +++LGG Q+ED
Sbjct: 297 VPNVQLGLDGGS-DWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMED 355
Query: 360 NVMDFDLGTSMLGFSTL 376
V+DFD+ LGFS L
Sbjct: 356 FVLDFDMEKKRLGFSRL 372
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 143/377 (37%), Gaps = 32/377 (8%)
Query: 25 VAIPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDXXXXXXXXXXXXXXXXX 84
V PV KD +T Y H G S LVLD+ GPL W C
Sbjct: 3 VLAPVTKDPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCKGGQPPAEIPCSSPTCLL 57
Query: 85 XIQCSRSGKSPVPGNGSDTTTNTCGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAV 144
G P P GSD C + N +SG G L+ + ++ V
Sbjct: 58 ANAYPAPG-CPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKV 116
Query: 145 D-QFLFSCAPTFXXXXXXXXXXXXXXXXXXPISLPSQLATGIGHQRKFFMCLSSSNGVVL 203
+ L +CAP+ ++LP+Q+A+ +F +CL + V
Sbjct: 117 NVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVA 176
Query: 204 SHHTSTTKLP-----LMYTPLI--GKSQDYFINVKSIKINGN----PLSVTIEGLTKLST 252
P + YTPL+ G S ++I+ +SI + P G LST
Sbjct: 177 IFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLST 236
Query: 253 IVPYATMESSIYXXXXXXXXXXXXXXSRD----MSVVAPVAPFSLCFSSK----GFNGSA 304
+PY + +Y + V VAPF +C+ +K G A
Sbjct: 237 RLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGYA 296
Query: 305 VPVIDFVLQSEMVKWRFYGSNSMVKVNEEVVCLGFLD-----GGSDLTSSIVLGGFQLED 359
VP + L W G NSMV V + C+ F++ G +++LGG Q+ED
Sbjct: 297 VPNVQLGLDGGS-DWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMED 355
Query: 360 NVMDFDLGTSMLGFSTL 376
V+DFD+ LGFS L
Sbjct: 356 FVLDFDMEKKRLGFSRL 372
>pdb|2YFN|A Chain A, Galactosidase Domain Of Alpha-Galactosidase-Sucrose
Kinase, Agask
pdb|2YFO|A Chain A, Galactosidase Domain Of Alpha-Galactosidase-Sucrose
Kinase, Agask, In Complex With Galactose
Length = 720
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 334 VVCLGFLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFSTLRGTCCSDFSPNSVLDES 393
CL F+ G D+ G +E N+ LG + F + RGT ++P +L E
Sbjct: 180 AACLDFVQGEFDVLR--FYGKHAMERNLERTPLGHGTIAFGSRRGTSSHQYNPAVILAEK 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,820,917
Number of Sequences: 62578
Number of extensions: 333906
Number of successful extensions: 920
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 29
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)