Query 040581
Match_columns 394
No_of_seqs 165 out of 1194
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 09:46:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 4.7E-58 1E-62 454.6 37.8 330 24-383 73-430 (431)
2 cd05472 cnd41_like Chloroplast 100.0 4.3E-55 9.4E-60 416.1 32.8 287 37-381 1-299 (299)
3 cd05489 xylanase_inhibitor_I_l 100.0 5.8E-54 1.3E-58 416.5 34.5 323 44-375 2-360 (362)
4 KOG1339 Aspartyl protease [Pos 100.0 4.3E-53 9.2E-58 416.8 34.3 326 34-382 43-397 (398)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.7E-53 1E-57 406.6 30.7 293 36-382 2-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 9.4E-53 2E-57 403.2 29.6 303 28-375 2-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 3.1E-52 6.7E-57 401.1 30.7 303 34-375 3-325 (325)
8 cd05488 Proteinase_A_fungi Fun 100.0 3.2E-52 6.8E-57 400.0 29.1 304 27-375 1-320 (320)
9 cd05486 Cathespin_E Cathepsin 100.0 5.6E-52 1.2E-56 397.7 28.7 296 38-375 1-316 (316)
10 PTZ00165 aspartyl protease; Pr 100.0 9.4E-52 2E-56 411.9 31.0 303 25-375 109-445 (482)
11 cd05475 nucellin_like Nucellin 100.0 1.7E-51 3.7E-56 386.2 30.8 264 36-381 1-273 (273)
12 cd05477 gastricsin Gastricsins 100.0 3.9E-51 8.4E-56 392.2 31.8 298 35-375 1-317 (318)
13 cd06098 phytepsin Phytepsin, a 100.0 6E-51 1.3E-55 390.5 30.6 296 27-375 1-317 (317)
14 cd05485 Cathepsin_D_like Cathe 100.0 1.1E-50 2.3E-55 390.7 29.7 307 28-375 3-329 (329)
15 PTZ00147 plasmepsin-1; Provisi 100.0 4.5E-50 9.7E-55 397.0 28.9 308 22-377 125-450 (453)
16 cd05487 renin_like Renin stimu 100.0 1E-49 2.2E-54 383.6 29.6 302 33-375 4-325 (326)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 9.2E-50 2E-54 394.0 30.0 306 23-376 125-448 (450)
18 cd05476 pepsin_A_like_plant Ch 100.0 5.1E-49 1.1E-53 368.0 28.9 247 37-381 1-265 (265)
19 cd05473 beta_secretase_like Be 100.0 5.1E-48 1.1E-52 377.1 30.1 311 37-384 3-350 (364)
20 cd05474 SAP_like SAPs, pepsin- 100.0 4.2E-47 9.1E-52 360.6 26.0 263 37-375 2-294 (295)
21 cd06097 Aspergillopepsin_like 100.0 2.9E-46 6.2E-51 351.9 26.7 264 38-375 1-278 (278)
22 PF00026 Asp: Eukaryotic aspar 100.0 2.2E-45 4.8E-50 351.9 19.0 298 37-375 1-316 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 8.7E-44 1.9E-48 335.2 28.0 267 38-375 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 9.1E-30 2E-34 220.2 14.0 158 38-206 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 3.2E-25 6.9E-30 191.6 15.3 148 225-375 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.8 1.4E-19 3E-24 145.9 12.0 108 40-170 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.0 2.4E-05 5.1E-10 60.7 7.3 94 36-172 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.3 0.0025 5.3E-08 52.0 9.7 101 27-171 2-102 (121)
29 PF13650 Asp_protease_2: Aspar 96.4 0.029 6.4E-07 42.5 8.9 89 40-171 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.2 0.18 3.8E-06 41.2 9.1 92 34-171 13-106 (124)
31 PF11925 DUF3443: Protein of u 94.8 4.2 9.1E-05 39.2 19.2 53 199-262 216-272 (370)
32 cd05479 RP_DDI RP_DDI; retrope 94.6 0.24 5.3E-06 40.4 8.5 24 349-372 100-123 (124)
33 PF08284 RVP_2: Retroviral asp 92.2 0.78 1.7E-05 38.1 7.7 27 349-375 105-131 (135)
34 cd05484 retropepsin_like_LTR_2 90.0 0.36 7.7E-06 36.9 3.3 28 38-67 1-28 (91)
35 TIGR02281 clan_AA_DTGA clan AA 89.4 0.9 1.9E-05 36.9 5.4 35 224-267 10-44 (121)
36 TIGR03698 clan_AA_DTGF clan AA 88.6 2.6 5.7E-05 33.4 7.5 23 349-371 85-107 (107)
37 PF13650 Asp_protease_2: Aspar 88.3 0.84 1.8E-05 34.2 4.3 30 232-267 2-31 (90)
38 cd05484 retropepsin_like_LTR_2 87.5 1.1 2.4E-05 34.2 4.6 30 232-267 4-33 (91)
39 PF12384 Peptidase_A2B: Ty3 tr 86.6 2.9 6.2E-05 35.6 6.7 30 232-267 38-67 (177)
40 cd06095 RP_RTVL_H_like Retrope 86.5 3.8 8.1E-05 30.9 7.0 26 41-68 2-27 (86)
41 PF13975 gag-asp_proteas: gag- 85.8 1.3 2.9E-05 32.2 4.0 32 34-67 5-36 (72)
42 PF13975 gag-asp_proteas: gag- 84.4 2 4.4E-05 31.3 4.4 30 232-267 12-41 (72)
43 cd05483 retropepsin_like_bacte 83.7 2.4 5.1E-05 32.1 4.8 31 231-267 5-35 (96)
44 cd06095 RP_RTVL_H_like Retrope 83.4 2 4.3E-05 32.5 4.2 29 233-267 3-31 (86)
45 COG3577 Predicted aspartyl pro 82.3 7.8 0.00017 34.3 7.8 80 25-135 94-173 (215)
46 PF00077 RVP: Retroviral aspar 78.5 3 6.6E-05 32.1 3.8 29 38-68 6-34 (100)
47 PF00077 RVP: Retroviral aspar 75.0 4.3 9.3E-05 31.3 3.8 27 231-263 8-34 (100)
48 cd05481 retropepsin_like_LTR_1 70.5 5.8 0.00013 30.5 3.5 31 232-267 2-32 (93)
49 PF02160 Peptidase_A3: Caulifl 66.0 71 0.0015 28.4 9.7 26 349-375 92-117 (201)
50 PF09668 Asp_protease: Asparty 62.5 12 0.00026 30.5 4.0 30 232-267 28-57 (124)
51 COG3577 Predicted aspartyl pro 62.3 15 0.00032 32.6 4.6 35 224-267 104-138 (215)
52 cd05482 HIV_retropepsin_like R 62.2 9.8 0.00021 28.9 3.2 26 41-68 2-27 (87)
53 COG5550 Predicted aspartyl pro 49.6 14 0.0003 29.9 2.3 20 248-267 29-49 (125)
54 PF12384 Peptidase_A2B: Ty3 tr 48.8 23 0.00049 30.3 3.5 28 39-66 34-61 (177)
55 cd05475 nucellin_like Nucellin 48.2 35 0.00076 31.6 5.2 45 24-68 145-195 (273)
56 TIGR03698 clan_AA_DTGF clan AA 44.7 1.1E+02 0.0024 23.9 6.9 65 40-135 2-71 (107)
57 PF09668 Asp_protease: Asparty 42.5 39 0.00084 27.6 3.9 30 34-65 21-50 (124)
58 cd05470 pepsin_retropepsin_lik 41.8 22 0.00048 27.5 2.4 26 233-262 3-28 (109)
59 PLN03146 aspartyl protease fam 35.3 51 0.0011 33.0 4.4 44 24-67 267-324 (431)
60 cd05471 pepsin_like Pepsin-lik 34.5 59 0.0013 29.7 4.4 45 23-68 168-220 (283)
61 cd05482 HIV_retropepsin_like R 33.5 56 0.0012 24.8 3.3 24 233-262 3-26 (87)
62 cd05472 cnd41_like Chloroplast 31.9 46 0.00099 31.2 3.3 45 23-67 132-188 (299)
63 cd00303 retropepsin_like Retro 29.8 85 0.0018 21.7 3.8 20 248-267 12-31 (92)
64 cd06096 Plasmepsin_5 Plasmepsi 26.5 75 0.0016 30.3 3.8 30 229-262 4-33 (326)
65 cd06097 Aspergillopepsin_like 24.8 60 0.0013 30.0 2.7 28 231-262 3-30 (278)
66 PF12508 DUF3714: Protein of u 22.5 5.2E+02 0.011 23.0 7.9 50 224-276 101-151 (200)
67 cd05485 Cathepsin_D_like Cathe 22.3 1E+02 0.0022 29.4 3.8 41 24-67 181-227 (329)
68 PF08284 RVP_2: Retroviral asp 21.9 1.2E+02 0.0026 24.9 3.6 28 36-65 20-47 (135)
69 cd05477 gastricsin Gastricsins 21.3 94 0.002 29.4 3.3 29 230-262 5-33 (318)
70 KOG1339 Aspartyl protease [Pos 20.8 1.5E+02 0.0033 29.2 4.8 43 24-67 231-285 (398)
71 cd05474 SAP_like SAPs, pepsin- 20.3 95 0.0021 28.8 3.0 27 230-260 4-30 (295)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=4.7e-58 Score=454.64 Aligned_cols=330 Identities=25% Similarity=0.436 Sum_probs=267.6
Q ss_pred eEEEeeeecCCCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCC--CC--------CCCCCCCCCCCCCCcccCCCCC
Q 040581 24 SVAIPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSS--AD--------VSSSSSRRLIPSQSIQCSRSGK 93 (394)
Q Consensus 24 ~~~~pl~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c--~~--------p~~Sst~~~~~c~~~~C~~~~~ 93 (394)
.+..++.. .+++|+++|.||||||++.|++||||+++||+|.+| |+ |++|+||+.++|.++.|+....
T Consensus 73 ~~~~~~~~--~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~ 150 (431)
T PLN03146 73 DPQSDLIS--NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN 150 (431)
T ss_pred ccccCccc--CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC
Confidence 34444443 568999999999999999999999999999999987 32 7899999999999999976432
Q ss_pred CCCCCCCCCCCC-CCceeeEEeCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCCC-CCcceeeecC
Q 040581 94 SPVPGNGSDTTT-NTCGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGLA-RGARGMLGLG 171 (394)
Q Consensus 94 ~~~~~~~~~~~~-~~~~~~~~Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~GIlGLg 171 (394)
... |.. +.|.|.+.|+ ||+.+.|.+++|+|+|++... +.++++++.|||++.+ .+.+ ...+||||||
T Consensus 151 --~~~----c~~~~~c~y~i~Yg-dgs~~~G~l~~Dtltlg~~~~--~~~~v~~~~FGc~~~~--~g~f~~~~~GilGLG 219 (431)
T PLN03146 151 --QAS----CSDENTCTYSYSYG-DGSFTKGNLAVETLTIGSTSG--RPVSFPGIVFGCGHNN--GGTFDEKGSGIVGLG 219 (431)
T ss_pred --CCC----CCCCCCCeeEEEeC-CCCceeeEEEEEEEEeccCCC--CcceeCCEEEeCCCCC--CCCccCCCceeEecC
Confidence 111 543 4699999998 888899999999999987532 1236889999999987 3322 3589999999
Q ss_pred CCCCchhhhhhcccCCcceEEEeecCC------CCeEEEcCCCCCCC-CceEEecccC--CCceEEEEeEEEEcCEEEEE
Q 040581 172 RAPISLPSQLATGIGHQRKFFMCLSSS------NGVVLSHHTSTTKL-PLMYTPLIGK--SQDYFINVKSIKINGNPLSV 242 (394)
Q Consensus 172 ~~~~s~~~ql~~~~~i~~~Fs~~L~~~------~G~l~fGg~~~~~g-~~~~tpl~~~--~~~y~v~l~~i~v~~~~~~~ 242 (394)
+...|+++|+... +.++||+||.+. .|.|+||+.+++.+ .+.||||+.+ +.+|.|+|++|+||++.+.+
T Consensus 220 ~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~ 297 (431)
T PLN03146 220 GGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPY 297 (431)
T ss_pred CCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcC
Confidence 9999999999764 336999999641 79999999766544 5899999853 27999999999999998765
Q ss_pred e---c----CCceEEeccCceeeechHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCc
Q 040581 243 T---I----EGLTKLSTIVPYATMESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSE 315 (394)
Q Consensus 243 ~---~----~~~~iiDTGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~ 315 (394)
+ + .+++||||||++++||+++|++++++|.+.+.. .........+..||+... ...+|+|+|+|+|
T Consensus 298 ~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~----~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F~G- 370 (431)
T PLN03146 298 TGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGG----ERVSDPQGLLSLCYSSTS--DIKLPIITAHFTG- 370 (431)
T ss_pred CccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhcc----ccCCCCCCCCCccccCCC--CCCCCeEEEEECC-
Confidence 4 1 247999999999999999999999999988752 111122334678997543 2468999999997
Q ss_pred ceEEEEccCCeEEEeCCceEEEEEEeCCCCCCCeeEECccceeeeEEEEeCCCCeEEEEeCCCCCCCC
Q 040581 316 MVKWRFYGSNSMVKVNEEVVCLGFLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFSTLRGTCCSD 383 (394)
Q Consensus 316 ~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~~~~~~C~~ 383 (394)
++++|+|++|++...++..|++++... +.+|||+.|||++|+|||.+++||||| +.+|++
T Consensus 371 -a~~~l~~~~~~~~~~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa---~~~C~~ 430 (431)
T PLN03146 371 -ADVKLQPLNTFVKVSEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFK---PTDCTK 430 (431)
T ss_pred -CeeecCcceeEEEcCCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeee---cCCcCc
Confidence 899999999999877677899987542 258999999999999999999999999 889976
No 2
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.3e-55 Score=416.13 Aligned_cols=287 Identities=28% Similarity=0.499 Sum_probs=237.9
Q ss_pred cEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEeCC
Q 040581 37 QYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQNGI 116 (394)
Q Consensus 37 ~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 116 (394)
+|+++|.||||||++.|+|||||+++||+|.+ | |.|.++|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~----------------------------------c----~~~~i~Yg- 41 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQP----------------------------------C----CLYQVSYG- 41 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCC----------------------------------C----CeeeeEeC-
Confidence 59999999999999999999999999998766 3 56999998
Q ss_pred CCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCCCCCcceeeecCCCCCchhhhhhcccCCcceEEEeec
Q 040581 117 SGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGLARGARGMLGLGRAPISLPSQLATGIGHQRKFFMCLS 196 (394)
Q Consensus 117 ~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~L~ 196 (394)
+|+.++|.+++|+|+|++.. .++++.|||+... .+.+...+||||||+...+++.|+..+. +++||+||.
T Consensus 42 ~Gs~~~G~~~~D~v~ig~~~------~~~~~~Fg~~~~~--~~~~~~~~GilGLg~~~~s~~~ql~~~~--~~~FS~~L~ 111 (299)
T cd05472 42 DGSYTTGDLATDTLTLGSSD------VVPGFAFGCGHDN--EGLFGGAAGLLGLGRGKLSLPSQTASSY--GGVFSYCLP 111 (299)
T ss_pred CCceEEEEEEEEEEEeCCCC------ccCCEEEECCccC--CCccCCCCEEEECCCCcchHHHHhhHhh--cCceEEEcc
Confidence 88888999999999998752 5678999999877 3334478999999999999999887652 489999998
Q ss_pred CC----CCeEEEcCCCCCCCCceEEecccCC---CceEEEEeEEEEcCEEEEEe----cCCceEEeccCceeeechHHHH
Q 040581 197 SS----NGVVLSHHTSTTKLPLMYTPLIGKS---QDYFINVKSIKINGNPLSVT----IEGLTKLSTIVPYATMESSIYA 265 (394)
Q Consensus 197 ~~----~G~l~fGg~~~~~g~~~~tpl~~~~---~~y~v~l~~i~v~~~~~~~~----~~~~~iiDTGTt~~~lp~~~~~ 265 (394)
+. .|+|+|||.++..+++.|+|++.++ .+|.|+|++|+|+++.+..+ ....++|||||++++||+++|+
T Consensus 112 ~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~ 191 (299)
T cd05472 112 DRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYA 191 (299)
T ss_pred CCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHH
Confidence 63 8999999987658899999998753 68999999999999987642 1457999999999999999999
Q ss_pred HHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEe-CCceEEEEEEeCCC
Q 040581 266 TFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKV-NEEVVCLGFLDGGS 344 (394)
Q Consensus 266 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~-~~~~~C~~~~~~~~ 344 (394)
+|.+++.+.... .........+..|++.+......+|+|+|+|++ +++++|+|++|++.. ..+..|+++.....
T Consensus 192 ~l~~~l~~~~~~----~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~-g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~ 266 (299)
T cd05472 192 ALRDAFRAAMAA----YPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQG-GADVELDASGVLYPVDDSSQVCLAFAGTSD 266 (299)
T ss_pred HHHHHHHHHhcc----CCCCCCCCCCCccCcCCCCcCCccCCEEEEECC-CCEEEeCcccEEEEecCCCCEEEEEeCCCC
Confidence 999999887641 222222223346987665445679999999985 389999999999843 34578998876532
Q ss_pred CCCCeeEECccceeeeEEEEeCCCCeEEEEeCCCCCC
Q 040581 345 DLTSSIVLGGFQLEDNVMDFDLGTSMLGFSTLRGTCC 381 (394)
Q Consensus 345 ~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~~~~~~C 381 (394)
. .+.+|||+.|||++|+|||++++||||| +.+|
T Consensus 267 ~-~~~~ilG~~fl~~~~vvfD~~~~~igfa---~~~C 299 (299)
T cd05472 267 D-GGLSIIGNVQQQTFRVVYDVAGGRIGFA---PGGC 299 (299)
T ss_pred C-CCCEEEchHHccceEEEEECCCCEEeEe---cCCC
Confidence 2 3568999999999999999999999999 7777
No 3
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=5.8e-54 Score=416.54 Aligned_cols=323 Identities=41% Similarity=0.736 Sum_probs=257.4
Q ss_pred eCCCCCe-EEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCC-----CCCCCCCCCCceeeEE-eCC
Q 040581 44 HGVSQVP-INLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVP-----GNGSDTTTNTCGVFTQ-NGI 116 (394)
Q Consensus 44 iGtP~q~-~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~-----~~~~~~~~~~~~~~~~-Y~~ 116 (394)
+|||-.+ +.|++||||+++||+|.+| +|+||+.++|.++.|+.+.+...+ ..+..|.++.|.|... |+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~----~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~- 76 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG----HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPV- 76 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC----CcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccc-
Confidence 6889888 9999999999999999975 789999999999999866532110 0122377778988665 65
Q ss_pred CCceEeeEEEEEEEEecccCCCC-cceecccEEEecccCccccCCCCCcceeeecCCCCCchhhhhhcccCCcceEEEee
Q 040581 117 SGLVTTGDLAEDTIAVRSELEDP-SITAVDQFLFSCAPTFLLQGLARGARGMLGLGRAPISLPSQLATGIGHQRKFFMCL 195 (394)
Q Consensus 117 ~g~~~~G~~~~D~v~i~~~~~~~-~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~L 195 (394)
+|+..+|.+++|+++|+..++.. ....++++.|||++.....+....+|||||||+++.|++.||..++..+++||+||
T Consensus 77 ~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL 156 (362)
T cd05489 77 TGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCL 156 (362)
T ss_pred cCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCcceEEEe
Confidence 78899999999999998643210 11257899999998863334445689999999999999999988766678999999
Q ss_pred cCC---CCeEEEcCCCC--C------CCCceEEecccCC---CceEEEEeEEEEcCEEEEEe---c------CCceEEec
Q 040581 196 SSS---NGVVLSHHTST--T------KLPLMYTPLIGKS---QDYFINVKSIKINGNPLSVT---I------EGLTKLST 252 (394)
Q Consensus 196 ~~~---~G~l~fGg~~~--~------~g~~~~tpl~~~~---~~y~v~l~~i~v~~~~~~~~---~------~~~~iiDT 252 (394)
.+. .|.|+||+.+. + .+.+.||||+.++ .+|.|+|++|+||++.+.++ + .+++||||
T Consensus 157 ~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDS 236 (362)
T cd05489 157 PSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLST 236 (362)
T ss_pred CCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEec
Confidence 874 89999998763 2 4789999999763 79999999999999988653 0 35799999
Q ss_pred cCceeeechHHHHHHHHHHHHHHHhcccCceecCCC-CCCCceecccCCC----CCCCCeEEEEEcCcceEEEEccCCeE
Q 040581 253 IVPYATMESSIYATFAKAFTKAAAAASRDMSVVAPV-APFSLCFSSKGFN----GSAVPVIDFVLQSEMVKWRFYGSNSM 327 (394)
Q Consensus 253 GTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~-~~~~~C~~~~~~~----~~~~P~i~f~f~g~~~~~~i~~~~y~ 327 (394)
||++++||+++|++|.+++.+++.. ....... ...+.||+..... ...+|+|+|+|+|++++|+|+|++|+
T Consensus 237 GTs~t~lp~~~y~~l~~a~~~~~~~----~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~ 312 (362)
T cd05489 237 VVPYTVLRSDIYRAFTQAFAKATAR----IPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANSM 312 (362)
T ss_pred CCceEEECHHHHHHHHHHHHHHhcc----cCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCceE
Confidence 9999999999999999999988752 2222111 1236898754321 35799999999863489999999999
Q ss_pred EEeCCceEEEEEEeCCCCCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 328 VKVNEEVVCLGFLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 328 ~~~~~~~~C~~~~~~~~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
++..++..|++++.......+.||||+.|||++|+|||.+++|||||+
T Consensus 313 ~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~ 360 (362)
T cd05489 313 VQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSS 360 (362)
T ss_pred EEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeeccc
Confidence 987767789999876543245799999999999999999999999995
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-53 Score=416.78 Aligned_cols=326 Identities=27% Similarity=0.407 Sum_probs=268.7
Q ss_pred CCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCC--C---------CCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 040581 34 STLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSA--D---------VSSSSSRRLIPSQSIQCSRSGKSPVPGNGSD 102 (394)
Q Consensus 34 ~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~--~---------p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~ 102 (394)
.+++|+++|.||||||+|+|++||||+++||+|..|. | |++|+||+.+.|.++.|..... +.
T Consensus 43 ~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~---~~---- 115 (398)
T KOG1339|consen 43 SSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ---SC---- 115 (398)
T ss_pred cccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCcccccccc---Cc----
Confidence 5679999999999999999999999999999998882 2 6899999999999999987642 12
Q ss_pred CCCCCceeeEEeCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCCC-CCcceeeecCCCCCchhhhh
Q 040581 103 TTTNTCGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGLA-RGARGMLGLGRAPISLPSQL 181 (394)
Q Consensus 103 ~~~~~~~~~~~Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~ql 181 (394)
+.++.|.|.+.|+ +++.++|.+++|+|++++.+ ...+++++|||+..+...... .+.+||||||+...+++.|+
T Consensus 116 ~~~~~C~y~i~Yg-d~~~~~G~l~~Dtv~~~~~~----~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~ 190 (398)
T KOG1339|consen 116 SPNSSCPYSIQYG-DGSSTSGYLATDTVTFGGTT----SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQL 190 (398)
T ss_pred ccCCcCceEEEeC-CCCceeEEEEEEEEEEcccc----ccccccEEEEeeecCccccccccccceEeecCCCCccceeec
Confidence 5678999999999 88999999999999999842 126678999999998422111 46899999999999999999
Q ss_pred hcccCCcceEEEeecCC------CCeEEEcCCCC--CCCCceEEecccCCC-ceEEEEeEEEEcCEEEEEe-----c-CC
Q 040581 182 ATGIGHQRKFFMCLSSS------NGVVLSHHTST--TKLPLMYTPLIGKSQ-DYFINVKSIKINGNPLSVT-----I-EG 246 (394)
Q Consensus 182 ~~~~~i~~~Fs~~L~~~------~G~l~fGg~~~--~~g~~~~tpl~~~~~-~y~v~l~~i~v~~~~~~~~-----~-~~ 246 (394)
....+..++||+||.+. +|.|+||+.+. +.+.+.|+||+.+.. +|.|.+.+|+|+++. .+. . ..
T Consensus 191 ~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~~~~~~~~~ 269 (398)
T KOG1339|consen 191 PSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGSSLFCTDGG 269 (398)
T ss_pred ccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCcceEecCCC
Confidence 98877667899999977 69999999764 678899999998843 999999999999854 221 1 37
Q ss_pred ceEEeccCceeeechHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCe
Q 040581 247 LTKLSTIVPYATMESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNS 326 (394)
Q Consensus 247 ~~iiDTGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y 326 (394)
++|+||||++++||+++|++++++|.+... . .......+..|+...... ..+|.|+|+|++ ++.|.+++++|
T Consensus 270 ~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-----~-~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~-g~~~~l~~~~y 341 (398)
T KOG1339|consen 270 GAIIDSGTSLTYLPTSAYNALREAIGAEVS-----V-VGTDGEYFVPCFSISTSG-VKLPDITFHFGG-GAVFSLPPKNY 341 (398)
T ss_pred CEEEECCcceeeccHHHHHHHHHHHHhhee-----c-cccCCceeeecccCCCCc-ccCCcEEEEECC-CcEEEeCccce
Confidence 899999999999999999999999988631 0 001223456899876433 459999999995 49999999999
Q ss_pred EEEeCCceE-EEEEEeCCCCCCCeeEECccceeeeEEEEeCC-CCeEEEEeCCCCCCC
Q 040581 327 MVKVNEEVV-CLGFLDGGSDLTSSIVLGGFQLEDNVMDFDLG-TSMLGFSTLRGTCCS 382 (394)
Q Consensus 327 ~~~~~~~~~-C~~~~~~~~~~~~~~ilG~~flr~~yvvFD~~-~~rIGfa~~~~~~C~ 382 (394)
++...++.. |++++...... ..||||+.|||+++++||.. ++|||||+.. +.|+
T Consensus 342 ~~~~~~~~~~Cl~~~~~~~~~-~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~-~~c~ 397 (398)
T KOG1339|consen 342 LVEVSDGGGVCLAFFNGMDSG-PLWILGDVFQQNYLVVFDLGENSRVGFAPAL-TNCS 397 (398)
T ss_pred EEEECCCCCceeeEEecCCCC-ceEEEchHHhCCEEEEEeCCCCCEEEecccc-ccCC
Confidence 998775434 99988775432 58999999999999999999 9999999633 6664
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.7e-53 Score=406.61 Aligned_cols=293 Identities=19% Similarity=0.263 Sum_probs=233.4
Q ss_pred ccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCC--C-------C-CCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 040581 36 LQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSS--A-------D-VSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTT 105 (394)
Q Consensus 36 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c--~-------~-p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~ 105 (394)
++|+++|.||||||+++|+|||||+++||+|..| | | |++|+|++.++|.+..|... .. |.+
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~-----~~----~~~ 72 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYC-----LS----CLN 72 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCcccccc-----Cc----CCC
Confidence 5899999999999999999999999999999887 2 2 77999999999999999531 22 777
Q ss_pred CCceeeEEeCCCCceEeeEEEEEEEEecccCCC-CcceecccEEEecccCccccCCCCCcceeeecCCCCCc----hhhh
Q 040581 106 NTCGVFTQNGISGLVTTGDLAEDTIAVRSELED-PSITAVDQFLFSCAPTFLLQGLARGARGMLGLGRAPIS----LPSQ 180 (394)
Q Consensus 106 ~~~~~~~~Y~~~g~~~~G~~~~D~v~i~~~~~~-~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s----~~~q 180 (394)
+.|.|.+.|+ +|+.+.|.+++|+|+|++.... .+... .++.|||+..+.........+||||||+.+.+ ...+
T Consensus 73 ~~~~~~i~Y~-~gs~~~G~~~~D~v~lg~~~~~~~~~~~-~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~ 150 (326)
T cd06096 73 NKCEYSISYS-EGSSISGFYFSDFVSFESYLNSNSEKES-FKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIIL 150 (326)
T ss_pred CcCcEEEEEC-CCCceeeEEEEEEEEeccCCCCcccccc-ccEEeccCccccCcccccccceEEEccCCcccccCchhHH
Confidence 8899999998 8888999999999999876321 00011 24789999876322223568999999997642 1222
Q ss_pred hhcccCC---cceEEEeecCCCCeEEEcCCCC--CC----------CCceEEecccCCCceEEEEeEEEEcCEE--EEEe
Q 040581 181 LATGIGH---QRKFFMCLSSSNGVVLSHHTST--TK----------LPLMYTPLIGKSQDYFINVKSIKINGNP--LSVT 243 (394)
Q Consensus 181 l~~~~~i---~~~Fs~~L~~~~G~l~fGg~~~--~~----------g~~~~tpl~~~~~~y~v~l~~i~v~~~~--~~~~ 243 (394)
+.++..+ +++||+||.++.|+|+|||++. +. +++.|+|+... .+|.|.+++|+++++. ....
T Consensus 151 l~~~~~~~~~~~~FS~~l~~~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~-~~y~v~l~~i~vg~~~~~~~~~ 229 (326)
T cd06096 151 LFTKRPKLKKDKIFSICLSEDGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK-YYYYVKLEGLSVYGTTSNSGNT 229 (326)
T ss_pred HHHhcccccCCceEEEEEcCCCeEEEECccChhhhcccccccccccCCceEEeccCC-ceEEEEEEEEEEcccccceecc
Confidence 3333333 3899999998899999999864 44 78999999876 8999999999999886 2111
Q ss_pred cCCceEEeccCceeeechHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEcc
Q 040581 244 IEGLTKLSTIVPYATMESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYG 323 (394)
Q Consensus 244 ~~~~~iiDTGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~ 323 (394)
....++|||||++++||+++|+++.+++ |+|+|.|++ +++++++|
T Consensus 230 ~~~~aivDSGTs~~~lp~~~~~~l~~~~----------------------------------P~i~~~f~~-g~~~~i~p 274 (326)
T cd06096 230 KGLGMLVDSGSTLSHFPEDLYNKINNFF----------------------------------PTITIIFEN-NLKIDWKP 274 (326)
T ss_pred cCCCEEEeCCCCcccCCHHHHHHHHhhc----------------------------------CcEEEEEcC-CcEEEECH
Confidence 1567999999999999999998886431 799999985 38999999
Q ss_pred CCeEEEeCCceEEEEEEeCCCCCCCeeEECccceeeeEEEEeCCCCeEEEEeCCCCCCC
Q 040581 324 SNSMVKVNEEVVCLGFLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFSTLRGTCCS 382 (394)
Q Consensus 324 ~~y~~~~~~~~~C~~~~~~~~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~~~~~~C~ 382 (394)
++|++...+..+|+++.... +.+|||++|||++|+|||.+++||||| +++|.
T Consensus 275 ~~y~~~~~~~~c~~~~~~~~----~~~ILG~~flr~~y~vFD~~~~riGfa---~~~C~ 326 (326)
T cd06096 275 SSYLYKKESFWCKGGEKSVS----NKPILGASFFKNKQIIFDLDNNRIGFV---ESNCP 326 (326)
T ss_pred HHhccccCCceEEEEEecCC----CceEEChHHhcCcEEEEECcCCEEeeE---cCCCC
Confidence 99999876555666654432 468999999999999999999999999 77784
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=9.4e-53 Score=403.18 Aligned_cols=303 Identities=20% Similarity=0.217 Sum_probs=239.0
Q ss_pred eeeecCCCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q 040581 28 PVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNT 107 (394)
Q Consensus 28 pl~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~ 107 (394)
||.+ ..+.+|+++|.||||||++.|+|||||+++||+|..| ....|.... .+++++++++....
T Consensus 2 ~l~n-~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C--------------~~~~c~~~~-~f~~~~Sst~~~~~ 65 (317)
T cd05478 2 PLTN-YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYC--------------SSQACSNHN-RFNPRQSSTYQSTG 65 (317)
T ss_pred cccc-ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCC--------------CcccccccC-cCCCCCCcceeeCC
Confidence 5666 3578999999999999999999999999999999886 223344332 24445455566667
Q ss_pred ceeeEEeCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCC-CCCcceeeecCCCCC------chhhh
Q 040581 108 CGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGL-ARGARGMLGLGRAPI------SLPSQ 180 (394)
Q Consensus 108 ~~~~~~Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~~GIlGLg~~~~------s~~~q 180 (394)
+.+.+.|+ +|+ +.|.+++|+|+|++. .++++.|||++....... ....+||||||++.. ++..+
T Consensus 66 ~~~~~~yg-~gs-~~G~~~~D~v~ig~~-------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 136 (317)
T cd05478 66 QPLSIQYG-TGS-MTGILGYDTVQVGGI-------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDN 136 (317)
T ss_pred cEEEEEEC-Cce-EEEEEeeeEEEECCE-------EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHH
Confidence 88999998 665 899999999999986 778999999976521111 235799999998643 47789
Q ss_pred hhcccCC-cceEEEeecCC---CCeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEecCCceEEeccC
Q 040581 181 LATGIGH-QRKFFMCLSSS---NGVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVTIEGLTKLSTIV 254 (394)
Q Consensus 181 l~~~~~i-~~~Fs~~L~~~---~G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~~~~~~iiDTGT 254 (394)
|++++.| +++||+||.++ +|+|+|||+|. +.+++.|+|+... .+|.|.+++|+|+++.+....+..++|||||
T Consensus 137 L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~-~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGt 215 (317)
T cd05478 137 MMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE-TYWQITVDSVTINGQVVACSGGCQAIVDTGT 215 (317)
T ss_pred HHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC-cEEEEEeeEEEECCEEEccCCCCEEEECCCc
Confidence 9999888 68999999986 69999999864 7999999999764 8999999999999998764324579999999
Q ss_pred ceeeechHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEeCCce
Q 040581 255 PYATMESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVNEEV 334 (394)
Q Consensus 255 t~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~~~ 334 (394)
+++++|+++|++|++++.+... . ......+|... ..+|.|+|+|+| ++++|||++|+... +.
T Consensus 216 s~~~lp~~~~~~l~~~~~~~~~-------~--~~~~~~~C~~~-----~~~P~~~f~f~g--~~~~i~~~~y~~~~--~~ 277 (317)
T cd05478 216 SLLVGPSSDIANIQSDIGASQN-------Q--NGEMVVNCSSI-----SSMPDVVFTING--VQYPLPPSAYILQD--QG 277 (317)
T ss_pred hhhhCCHHHHHHHHHHhCCccc-------c--CCcEEeCCcCc-----ccCCcEEEEECC--EEEEECHHHheecC--CC
Confidence 9999999999999988754321 0 00112356543 358999999987 89999999999865 45
Q ss_pred EEEEEEeCCCCCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 335 VCLGFLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 335 ~C~~~~~~~~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
.|+..+..... .+.||||++|||++|+|||++++|||||+
T Consensus 278 ~C~~~~~~~~~-~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 278 SCTSGFQSMGL-GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EEeEEEEeCCC-CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 89854443221 35799999999999999999999999994
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.1e-52 Score=401.06 Aligned_cols=303 Identities=20% Similarity=0.241 Sum_probs=235.1
Q ss_pred CCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEE
Q 040581 34 STLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQ 113 (394)
Q Consensus 34 ~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (394)
.+.+|+++|.||||||+++|+|||||+++||+|..|.. | ...|..+. .+++.+++++....|.|.+.
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~-----------~-~~~C~~~~-~y~~~~SsT~~~~~~~~~i~ 69 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSL-----------L-DIACWLHH-KYNSSKSSTYVKNGTEFAIQ 69 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCC-----------C-CccccCcC-cCCcccCcceeeCCcEEEEE
Confidence 46899999999999999999999999999999988720 0 12454332 24455455566667899999
Q ss_pred eCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCcccc-CCCCCcceeeecCCCCCc------hhhhhhcccC
Q 040581 114 NGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQ-GLARGARGMLGLGRAPIS------LPSQLATGIG 186 (394)
Q Consensus 114 Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql~~~~~ 186 (394)
|+ +| .++|.+++|+|++++. +++++.|||++..... ......+||||||++..+ +..+|++++.
T Consensus 70 Yg-~G-~~~G~~~~D~v~~g~~-------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~ 140 (325)
T cd05490 70 YG-SG-SLSGYLSQDTVSIGGL-------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKL 140 (325)
T ss_pred EC-Cc-EEEEEEeeeEEEECCE-------EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCC
Confidence 98 66 5899999999999986 7889999998775211 122467999999987543 5568888887
Q ss_pred C-cceEEEeecCC-----CCeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEecCCceEEeccCceee
Q 040581 187 H-QRKFFMCLSSS-----NGVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVTIEGLTKLSTIVPYAT 258 (394)
Q Consensus 187 i-~~~Fs~~L~~~-----~G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~~~~~~iiDTGTt~~~ 258 (394)
+ +++||+||.++ +|+|+|||++. +.+++.|+|+... .+|.|++++|+|+++.........+||||||++++
T Consensus 141 i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~-~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGTt~~~ 219 (325)
T cd05490 141 VEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK-AYWQIHMDQVDVGSGLTLCKGGCEAIVDTGTSLIT 219 (325)
T ss_pred CCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc-eEEEEEeeEEEECCeeeecCCCCEEEECCCCcccc
Confidence 7 68999999863 69999999864 7899999999765 89999999999998743322145799999999999
Q ss_pred echHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEeCC--ceEE
Q 040581 259 MESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVNE--EVVC 336 (394)
Q Consensus 259 lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~--~~~C 336 (394)
+|++++++|.+++.+. . .... .....|... ..+|+|+|+|+| ++++|+|++|+++... ...|
T Consensus 220 ~p~~~~~~l~~~~~~~-~-------~~~~-~~~~~C~~~-----~~~P~i~f~fgg--~~~~l~~~~y~~~~~~~~~~~C 283 (325)
T cd05490 220 GPVEEVRALQKAIGAV-P-------LIQG-EYMIDCEKI-----PTLPVISFSLGG--KVYPLTGEDYILKVSQRGTTIC 283 (325)
T ss_pred CCHHHHHHHHHHhCCc-c-------ccCC-CEEeccccc-----ccCCCEEEEECC--EEEEEChHHeEEeccCCCCCEE
Confidence 9999999998877532 1 1111 123467643 358999999987 8999999999987542 3579
Q ss_pred EE-EEeCCC--CCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 337 LG-FLDGGS--DLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 337 ~~-~~~~~~--~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
+. ++.... ...+.||||++|||++|+|||++++|||||+
T Consensus 284 ~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 284 LSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred eeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 74 544221 1245799999999999999999999999994
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.2e-52 Score=399.98 Aligned_cols=304 Identities=17% Similarity=0.219 Sum_probs=237.0
Q ss_pred EeeeecCCCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 040581 27 IPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTN 106 (394)
Q Consensus 27 ~pl~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~ 106 (394)
+||.+ ..+..|+++|.||||+|++.|+|||||+++||+|..| .+..|.... .++++.++++..+
T Consensus 1 ~~l~n-~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C--------------~~~~C~~~~-~y~~~~Sst~~~~ 64 (320)
T cd05488 1 VPLTN-YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKC--------------GSIACFLHS-KYDSSASSTYKAN 64 (320)
T ss_pred Ccccc-cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCC--------------CCcccCCcc-eECCCCCcceeeC
Confidence 46666 3568899999999999999999999999999999886 223454332 2344444556667
Q ss_pred CceeeEEeCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCcccc-CCCCCcceeeecCCCCCch------hh
Q 040581 107 TCGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQ-GLARGARGMLGLGRAPISL------PS 179 (394)
Q Consensus 107 ~~~~~~~Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~~s~------~~ 179 (394)
.|.+.+.|+ +| .++|.+++|++++++. .++++.|||+...... ......+||||||++..+. ..
T Consensus 65 ~~~~~~~y~-~g-~~~G~~~~D~v~ig~~-------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 135 (320)
T cd05488 65 GTEFKIQYG-SG-SLEGFVSQDTLSIGDL-------TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFY 135 (320)
T ss_pred CCEEEEEEC-Cc-eEEEEEEEeEEEECCE-------EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHH
Confidence 899999998 65 4899999999999886 7789999999765211 1124679999999976543 34
Q ss_pred hhhcccCC-cceEEEeecCC---CCeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEecCCceEEecc
Q 040581 180 QLATGIGH-QRKFFMCLSSS---NGVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVTIEGLTKLSTI 253 (394)
Q Consensus 180 ql~~~~~i-~~~Fs~~L~~~---~G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~~~~~~iiDTG 253 (394)
+|.+++.| +++||+||.+. +|.|+|||++. +.+++.|+|+... .+|.|++++|+|+++.+... ...++||||
T Consensus 136 ~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~-~~w~v~l~~i~vg~~~~~~~-~~~~ivDSG 213 (320)
T cd05488 136 NMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK-AYWEVELEKIGLGDEELELE-NTGAAIDTG 213 (320)
T ss_pred HHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC-cEEEEEeCeEEECCEEeccC-CCeEEEcCC
Confidence 67777777 78999999975 89999999864 7899999999864 89999999999999877655 567999999
Q ss_pred CceeeechHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEeCCc
Q 040581 254 VPYATMESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVNEE 333 (394)
Q Consensus 254 Tt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~~ 333 (394)
|+++++|+++++++.+++.+... . .. ....+|... ..+|.|+|+|+| ++++|||++|++.. +
T Consensus 214 tt~~~lp~~~~~~l~~~~~~~~~-----~---~~-~~~~~C~~~-----~~~P~i~f~f~g--~~~~i~~~~y~~~~--~ 275 (320)
T cd05488 214 TSLIALPSDLAEMLNAEIGAKKS-----W---NG-QYTVDCSKV-----DSLPDLTFNFDG--YNFTLGPFDYTLEV--S 275 (320)
T ss_pred cccccCCHHHHHHHHHHhCCccc-----c---CC-cEEeecccc-----ccCCCEEEEECC--EEEEECHHHheecC--C
Confidence 99999999999998887743211 0 01 111346543 358999999987 89999999999854 3
Q ss_pred eEEEEEEeCCC---CCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 334 VVCLGFLDGGS---DLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 334 ~~C~~~~~~~~---~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
..|+..+...+ ...+.||||++|||++|+|||.+++|||||+
T Consensus 276 g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 276 GSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 47986554321 1134799999999999999999999999994
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=5.6e-52 Score=397.66 Aligned_cols=296 Identities=18% Similarity=0.215 Sum_probs=231.6
Q ss_pred EEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEeCCC
Q 040581 38 YVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQNGIS 117 (394)
Q Consensus 38 Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 117 (394)
|+++|.||||||+++|+|||||+++||+|..| ....|..+. .+++.+++++....|.|.+.|+ +
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C--------------~~~~C~~~~-~y~~~~SsT~~~~~~~~~i~Yg-~ 64 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYC--------------TSQACTKHN-RFQPSESSTYVSNGEAFSIQYG-T 64 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCC--------------CCcccCccc-eECCCCCcccccCCcEEEEEeC-C
Confidence 89999999999999999999999999999886 223454432 2445555557777899999998 6
Q ss_pred CceEeeEEEEEEEEecccCCCCcceecccEEEecccCcccc-CCCCCcceeeecCCCCCc------hhhhhhcccCC-cc
Q 040581 118 GLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQ-GLARGARGMLGLGRAPIS------LPSQLATGIGH-QR 189 (394)
Q Consensus 118 g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql~~~~~i-~~ 189 (394)
| .+.|.+++|+|+|++. +++++.|||+...... ......+||||||++..+ +..+|.+++.+ ++
T Consensus 65 g-~~~G~~~~D~v~ig~~-------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~ 136 (316)
T cd05486 65 G-SLTGIIGIDQVTVEGI-------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELP 136 (316)
T ss_pred c-EEEEEeeecEEEECCE-------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCC
Confidence 5 5899999999999986 7789999998665211 112468999999987544 46778888877 67
Q ss_pred eEEEeecCC-----CCeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEecCCceEEeccCceeeechH
Q 040581 190 KFFMCLSSS-----NGVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVTIEGLTKLSTIVPYATMESS 262 (394)
Q Consensus 190 ~Fs~~L~~~-----~G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~ 262 (394)
+||+||.++ +|+|+|||++. +.|++.|+|+... .+|.|.+++|+|+++.+.......+||||||+++++|++
T Consensus 137 ~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~-~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~ 215 (316)
T cd05486 137 MFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ-GYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPSG 215 (316)
T ss_pred EEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc-eEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCHH
Confidence 999999863 79999999864 7899999999865 899999999999998765331456999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEeC--CceEEE-EE
Q 040581 263 IYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVN--EEVVCL-GF 339 (394)
Q Consensus 263 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~--~~~~C~-~~ 339 (394)
+++++.+++.+... .+ ....+|... ..+|+|+|+|+| ++++|+|++|++... .+..|+ ++
T Consensus 216 ~~~~l~~~~~~~~~---------~~-~~~~~C~~~-----~~~p~i~f~f~g--~~~~l~~~~y~~~~~~~~~~~C~~~~ 278 (316)
T cd05486 216 DIKQLQNYIGATAT---------DG-EYGVDCSTL-----SLMPSVTFTING--IPYSLSPQAYTLEDQSDGGGYCSSGF 278 (316)
T ss_pred HHHHHHHHhCCccc---------CC-cEEEecccc-----ccCCCEEEEECC--EEEEeCHHHeEEecccCCCCEEeeEE
Confidence 99998776643211 11 112356543 358999999987 999999999998752 245897 45
Q ss_pred EeCC--CCCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 340 LDGG--SDLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 340 ~~~~--~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
.... ....+.||||++|||++|+|||.+++|||||+
T Consensus 279 ~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 279 QGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 4432 11235799999999999999999999999994
No 10
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=9.4e-52 Score=411.86 Aligned_cols=303 Identities=20% Similarity=0.265 Sum_probs=232.8
Q ss_pred EEEeeeecCCCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 040581 25 VAIPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTT 104 (394)
Q Consensus 25 ~~~pl~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~ 104 (394)
...||.+ ..+.+|+++|.||||||+|+|+|||||+++||+|..|. +..|..+.. +++++++++.
T Consensus 109 ~~~~l~n-~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~--------------~~~C~~~~~-yd~s~SSTy~ 172 (482)
T PTZ00165 109 LQQDLLN-FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECK--------------SGGCAPHRK-FDPKKSSTYT 172 (482)
T ss_pred cceeccc-ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcC--------------cccccccCC-CCccccCCcE
Confidence 4556665 47889999999999999999999999999999998861 122322211 2222222222
Q ss_pred C--CC---ceeeEEeCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCcccc-CCCCCcceeeecCCCCC---
Q 040581 105 T--NT---CGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQ-GLARGARGMLGLGRAPI--- 175 (394)
Q Consensus 105 ~--~~---~~~~~~Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~~--- 175 (394)
. +. ..+.+.|| +| .+.|.+++|+|++++. +++++.||+++..... .....+|||||||++..
T Consensus 173 ~~~~~~~~~~~~i~YG-sG-s~~G~l~~DtV~ig~l-------~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~ 243 (482)
T PTZ00165 173 KLKLGDESAETYIQYG-TG-ECVLALGKDTVKIGGL-------KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFK 243 (482)
T ss_pred ecCCCCccceEEEEeC-CC-cEEEEEEEEEEEECCE-------EEccEEEEEEEeccccccccccccceeecCCCccccc
Confidence 2 11 24779998 44 6789999999999986 7889999999875211 22346899999998753
Q ss_pred ------chhhhhhcccCC-cceEEEeecCC---CCeEEEcCCCC--C--CCCceEEecccCCCceEEEEeEEEEcCEEEE
Q 040581 176 ------SLPSQLATGIGH-QRKFFMCLSSS---NGVVLSHHTST--T--KLPLMYTPLIGKSQDYFINVKSIKINGNPLS 241 (394)
Q Consensus 176 ------s~~~ql~~~~~i-~~~Fs~~L~~~---~G~l~fGg~~~--~--~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~ 241 (394)
++..+|.+++.+ +++||+||.++ +|+|+|||+|. + .+++.|+|+... .+|.|.+++|+|+++.+.
T Consensus 244 s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~-~yW~i~l~~i~vgg~~~~ 322 (482)
T PTZ00165 244 ESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST-DYWEIEVVDILIDGKSLG 322 (482)
T ss_pred ccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc-ceEEEEeCeEEECCEEee
Confidence 456788888887 78999999865 89999999864 3 578999999875 899999999999998776
Q ss_pred Ee-cCCceEEeccCceeeechHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcC---cce
Q 040581 242 VT-IEGLTKLSTIVPYATMESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQS---EMV 317 (394)
Q Consensus 242 ~~-~~~~~iiDTGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g---~~~ 317 (394)
.. ....+|+||||+++++|+++++++.+++... ..|... ..+|+|+|+|++ ..+
T Consensus 323 ~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-----------------~~C~~~-----~~lP~itf~f~g~~g~~v 380 (482)
T PTZ00165 323 FCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE-----------------EDCSNK-----DSLPRISFVLEDVNGRKI 380 (482)
T ss_pred ecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc-----------------cccccc-----ccCCceEEEECCCCCceE
Confidence 52 1457999999999999999999988765321 247653 358999999986 135
Q ss_pred EEEEccCCeEEEe----CCceEEE-EEEeCCC--CCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 318 KWRFYGSNSMVKV----NEEVVCL-GFLDGGS--DLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 318 ~~~i~~~~y~~~~----~~~~~C~-~~~~~~~--~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
+++++|++|+++. ..+..|+ +++.... ..++.||||++|||+||+|||.+++|||||+
T Consensus 381 ~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~ 445 (482)
T PTZ00165 381 KFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVP 445 (482)
T ss_pred EEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEe
Confidence 8999999999974 1245896 6765432 1246799999999999999999999999996
No 11
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.7e-51 Score=386.18 Aligned_cols=264 Identities=23% Similarity=0.358 Sum_probs=220.2
Q ss_pred ccEEEEEeeCCCCCeEEEEEEcCCCceeeeCC-CCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEe
Q 040581 36 LQYVAKIHHGVSQVPINLVLDLGGPLTWVDCD-SSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQN 114 (394)
Q Consensus 36 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y 114 (394)
++|+++|.||||||++.|++||||+++||+|. .| . . | .|.|++.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c--------------~-------------~----c---~c~~~i~Y 46 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPC--------------T-------------G----C---QCDYEIEY 46 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCC--------------C-------------C----C---cCccEeEe
Confidence 57999999999999999999999999999985 33 1 1 4 47799999
Q ss_pred CCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccC--CCCCcceeeecCCCCCchhhhhhcccCCcceEE
Q 040581 115 GISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQG--LARGARGMLGLGRAPISLPSQLATGIGHQRKFF 192 (394)
Q Consensus 115 ~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs 192 (394)
+ |++.++|.+++|+|+++..++. ..++++.|||+..+.... .....+||||||++..+++.||++++.++++||
T Consensus 47 g-d~~~~~G~~~~D~v~~~~~~~~---~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs 122 (273)
T cd05475 47 A-DGGSSMGVLVTDIFSLKLTNGS---RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIG 122 (273)
T ss_pred C-CCCceEEEEEEEEEEEeecCCC---cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEE
Confidence 8 8999999999999999754321 256789999997652111 234689999999999999999998887888999
Q ss_pred EeecCC-CCeEEEcCCCCCCCCceEEecccC--CCceEEEEeEEEEcCEEEEEecCCceEEeccCceeeechHHHHHHHH
Q 040581 193 MCLSSS-NGVVLSHHTSTTKLPLMYTPLIGK--SQDYFINVKSIKINGNPLSVTIEGLTKLSTIVPYATMESSIYATFAK 269 (394)
Q Consensus 193 ~~L~~~-~G~l~fGg~~~~~g~~~~tpl~~~--~~~y~v~l~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~~~~l~~ 269 (394)
+||.+. +|.|+||+..++.+++.|+|+..+ ..+|.|++.+|+|+++..... ...+||||||++++||+++|
T Consensus 123 ~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~-~~~~ivDTGTt~t~lp~~~y----- 196 (273)
T cd05475 123 HCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGK-GLEVVFDSGSSYTYFNAQAY----- 196 (273)
T ss_pred EEccCCCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCC-CceEEEECCCceEEcCCccc-----
Confidence 999887 799999987667889999999875 379999999999999865433 45799999999999998754
Q ss_pred HHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCc--ceEEEEccCCeEEEeCCceEEEEEEeCCCC-C
Q 040581 270 AFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSE--MVKWRFYGSNSMVKVNEEVVCLGFLDGGSD-L 346 (394)
Q Consensus 270 ~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~--~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~-~ 346 (394)
+|+|+|.|++. +++++|+|++|++...++..|++++..... .
T Consensus 197 -----------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~ 241 (273)
T cd05475 197 -----------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEIGL 241 (273)
T ss_pred -----------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCcCC
Confidence 47899999862 279999999999876666789998865432 2
Q ss_pred CCeeEECccceeeeEEEEeCCCCeEEEEeCCCCCC
Q 040581 347 TSSIVLGGFQLEDNVMDFDLGTSMLGFSTLRGTCC 381 (394)
Q Consensus 347 ~~~~ilG~~flr~~yvvFD~~~~rIGfa~~~~~~C 381 (394)
.+.||||+.|||++|+|||.+++||||| +++|
T Consensus 242 ~~~~ilG~~~l~~~~~vfD~~~~riGfa---~~~C 273 (273)
T cd05475 242 GNTNIIGDISMQGLMVIYDNEKQQIGWV---RSDC 273 (273)
T ss_pred CceEEECceEEEeeEEEEECcCCEeCcc---cCCC
Confidence 3579999999999999999999999999 6777
No 12
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.9e-51 Score=392.25 Aligned_cols=298 Identities=19% Similarity=0.241 Sum_probs=237.0
Q ss_pred CccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEe
Q 040581 35 TLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQN 114 (394)
Q Consensus 35 ~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y 114 (394)
+..|+++|.||||||++.|++||||+++||+|..| ..+.|.... .+++.+++++....|.|++.|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C--------------~~~~C~~~~-~f~~~~SsT~~~~~~~~~~~Y 65 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLC--------------QSQACTNHT-KFNPSQSSTYSTNGETFSLQY 65 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCC--------------CCccccccC-CCCcccCCCceECCcEEEEEE
Confidence 46899999999999999999999999999999886 223455432 355555556777789999999
Q ss_pred CCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCcccc-CCCCCcceeeecCCCC------CchhhhhhcccCC
Q 040581 115 GISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQ-GLARGARGMLGLGRAP------ISLPSQLATGIGH 187 (394)
Q Consensus 115 ~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~------~s~~~ql~~~~~i 187 (394)
+ +| .+.|.+++|+|++++. .++++.|||++..... ......+||||||++. .+++.||++++.|
T Consensus 66 g-~G-s~~G~~~~D~i~~g~~-------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i 136 (318)
T cd05477 66 G-SG-SLTGIFGYDTVTVQGI-------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLL 136 (318)
T ss_pred C-Cc-EEEEEEEeeEEEECCE-------EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCc
Confidence 8 66 4799999999999986 7889999999875211 1124579999999853 4678899998888
Q ss_pred -cceEEEeecCC----CCeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEe-cCCceEEeccCceeee
Q 040581 188 -QRKFFMCLSSS----NGVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVT-IEGLTKLSTIVPYATM 259 (394)
Q Consensus 188 -~~~Fs~~L~~~----~G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~-~~~~~iiDTGTt~~~l 259 (394)
+++||+||.+. +|.|+|||.++ +.+++.|+|+... .+|.|.+++|+|+++.+... ....+||||||+++++
T Consensus 137 ~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~-~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~l 215 (318)
T cd05477 137 QAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE-TYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTA 215 (318)
T ss_pred CCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc-eEEEEEeeEEEECCEEecccCCCceeeECCCCccEEC
Confidence 78999999875 79999999864 7899999999765 89999999999999877533 1456999999999999
Q ss_pred chHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEeCCceEEE-E
Q 040581 260 ESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVNEEVVCL-G 338 (394)
Q Consensus 260 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~~~~C~-~ 338 (394)
|+++|++|++++.+... . . .....+|... ..+|+|+|+|++ ++++||+++|+... +..|+ +
T Consensus 216 P~~~~~~l~~~~~~~~~-------~-~-~~~~~~C~~~-----~~~p~l~~~f~g--~~~~v~~~~y~~~~--~~~C~~~ 277 (318)
T cd05477 216 PQQVMSTLMQSIGAQQD-------Q-Y-GQYVVNCNNI-----QNLPTLTFTING--VSFPLPPSAYILQN--NGYCTVG 277 (318)
T ss_pred CHHHHHHHHHHhCCccc-------c-C-CCEEEeCCcc-----ccCCcEEEEECC--EEEEECHHHeEecC--CCeEEEE
Confidence 99999999988754322 0 0 1112346543 458999999987 89999999999875 34786 6
Q ss_pred EEeCC---CCCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 339 FLDGG---SDLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 339 ~~~~~---~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
+.... ....+.||||++|||++|+|||++++|||||+
T Consensus 278 i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~ 317 (318)
T cd05477 278 IEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFAT 317 (318)
T ss_pred EEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeee
Confidence 65431 11234699999999999999999999999995
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=6e-51 Score=390.52 Aligned_cols=296 Identities=19% Similarity=0.243 Sum_probs=231.3
Q ss_pred EeeeecCCCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 040581 27 IPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTN 106 (394)
Q Consensus 27 ~pl~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~ 106 (394)
+||.+ ..+.+|+++|.||||||+++|+|||||+++||+|..|. .+..|..+. .+++.+++++...
T Consensus 1 ~~l~n-~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~-------------~~~~C~~~~-~y~~~~SsT~~~~ 65 (317)
T cd06098 1 VALKN-YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCY-------------FSIACYFHS-KYKSSKSSTYKKN 65 (317)
T ss_pred Ccccc-cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCC-------------CCccccccC-cCCcccCCCcccC
Confidence 35665 46789999999999999999999999999999998861 022454433 2445555556666
Q ss_pred CceeeEEeCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccc-cCCCCCcceeeecCCCCCc------hhh
Q 040581 107 TCGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLL-QGLARGARGMLGLGRAPIS------LPS 179 (394)
Q Consensus 107 ~~~~~~~Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GIlGLg~~~~s------~~~ 179 (394)
...+.+.|+ +| .+.|.+++|+|++++. +++++.||+++.... .......+||||||++..+ +..
T Consensus 66 ~~~~~i~Yg-~G-~~~G~~~~D~v~ig~~-------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 136 (317)
T cd06098 66 GTSASIQYG-TG-SISGFFSQDSVTVGDL-------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWY 136 (317)
T ss_pred CCEEEEEcC-Cc-eEEEEEEeeEEEECCE-------EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHH
Confidence 778999998 55 5799999999999986 788999999876521 1123468999999987543 445
Q ss_pred hhhcccCC-cceEEEeecCC-----CCeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEec-CCceEE
Q 040581 180 QLATGIGH-QRKFFMCLSSS-----NGVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVTI-EGLTKL 250 (394)
Q Consensus 180 ql~~~~~i-~~~Fs~~L~~~-----~G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~~-~~~~ii 250 (394)
+|.+++.+ +++||+||.+. .|+|+|||+|+ +.|++.|+|+... .+|.|.+++|+|+++.+.... ...+||
T Consensus 137 ~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~-~~w~v~l~~i~v~g~~~~~~~~~~~aiv 215 (317)
T cd06098 137 NMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK-GYWQFEMGDVLIGGKSTGFCAGGCAAIA 215 (317)
T ss_pred HHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC-cEEEEEeCeEEECCEEeeecCCCcEEEE
Confidence 78888877 67999999753 79999999864 7899999999764 899999999999998765431 346999
Q ss_pred eccCceeeechHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEe
Q 040581 251 STIVPYATMESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKV 330 (394)
Q Consensus 251 DTGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~ 330 (394)
||||+++++|+++++++. . ...|+.. ..+|+|+|+|+| ++++|+|++|+++.
T Consensus 216 DTGTs~~~lP~~~~~~i~-------~--------------~~~C~~~-----~~~P~i~f~f~g--~~~~l~~~~yi~~~ 267 (317)
T cd06098 216 DSGTSLLAGPTTIVTQIN-------S--------------AVDCNSL-----SSMPNVSFTIGG--KTFELTPEQYILKV 267 (317)
T ss_pred ecCCcceeCCHHHHHhhh-------c--------------cCCcccc-----ccCCcEEEEECC--EEEEEChHHeEEee
Confidence 999999999998765542 1 2358754 248999999987 89999999999875
Q ss_pred CC--ceEEEE-EEeCC--CCCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 331 NE--EVVCLG-FLDGG--SDLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 331 ~~--~~~C~~-~~~~~--~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
.+ ...|++ ++... ....+.||||++|||++|+|||++++|||||+
T Consensus 268 ~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 268 GEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred cCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 43 357974 54322 11235799999999999999999999999994
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.1e-50 Score=390.65 Aligned_cols=307 Identities=21% Similarity=0.280 Sum_probs=238.3
Q ss_pred eeeecCCCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q 040581 28 PVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNT 107 (394)
Q Consensus 28 pl~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~ 107 (394)
||.+ ..+.+|+++|.||||+|+++|++||||+++||+|..|.. | ...|.... .+++..++++....
T Consensus 3 ~~~n-~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~-----------~-~~~c~~~~-~y~~~~Sst~~~~~ 68 (329)
T cd05485 3 PLSN-YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSW-----------T-NIACLLHN-KYDSTKSSTYKKNG 68 (329)
T ss_pred ccee-ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCC-----------C-CccccCCC-eECCcCCCCeEECC
Confidence 5555 467899999999999999999999999999999998721 1 12344322 24444455566678
Q ss_pred ceeeEEeCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCcccc-CCCCCcceeeecCCCCCc------hhhh
Q 040581 108 CGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQ-GLARGARGMLGLGRAPIS------LPSQ 180 (394)
Q Consensus 108 ~~~~~~Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~q 180 (394)
|.|.+.|+ +|+ +.|.+++|++++++. .++++.|||+...... ......+||||||++..+ +..|
T Consensus 69 ~~~~i~Y~-~g~-~~G~~~~D~v~ig~~-------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~ 139 (329)
T cd05485 69 TEFAIQYG-SGS-LSGFLSTDTVSVGGV-------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYN 139 (329)
T ss_pred eEEEEEEC-Cce-EEEEEecCcEEECCE-------EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHH
Confidence 99999998 665 899999999999986 7789999998765211 122467999999997654 4568
Q ss_pred hhcccCC-cceEEEeecCC-----CCeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEecCCceEEec
Q 040581 181 LATGIGH-QRKFFMCLSSS-----NGVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVTIEGLTKLST 252 (394)
Q Consensus 181 l~~~~~i-~~~Fs~~L~~~-----~G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~~~~~~iiDT 252 (394)
|.+++.+ +++||+||.+. .|+|+|||.+. +.|++.|+|+... .+|.|.+++++++++.+... ...+||||
T Consensus 140 l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~-~~~~v~~~~i~v~~~~~~~~-~~~~iiDS 217 (329)
T cd05485 140 MVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK-GYWQFKMDSVSVGEGEFCSG-GCQAIADT 217 (329)
T ss_pred HHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc-eEEEEEeeEEEECCeeecCC-CcEEEEcc
Confidence 8888887 68999999864 79999999864 7899999999764 89999999999999876533 45699999
Q ss_pred cCceeeechHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEeCC
Q 040581 253 IVPYATMESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVNE 332 (394)
Q Consensus 253 GTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~ 332 (394)
||+++++|+++++++.+++.+.. + .......+|... ..+|+|+|+|++ ++++|+|++|+++...
T Consensus 218 Gtt~~~lP~~~~~~l~~~~~~~~------~---~~~~~~~~C~~~-----~~~p~i~f~fgg--~~~~i~~~~yi~~~~~ 281 (329)
T cd05485 218 GTSLIAGPVDEIEKLNNAIGAKP------I---IGGEYMVNCSAI-----PSLPDITFVLGG--KSFSLTGKDYVLKVTQ 281 (329)
T ss_pred CCcceeCCHHHHHHHHHHhCCcc------c---cCCcEEEecccc-----ccCCcEEEEECC--EEeEEChHHeEEEecC
Confidence 99999999999999988765321 1 111112356543 358999999987 8999999999987642
Q ss_pred --ceEEE-EEEeCC--CCCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 333 --EVVCL-GFLDGG--SDLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 333 --~~~C~-~~~~~~--~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
...|+ +++... ....+.||||++|||++|+|||++++|||||+
T Consensus 282 ~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 282 MGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 35787 466432 11235799999999999999999999999983
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=4.5e-50 Score=396.96 Aligned_cols=308 Identities=13% Similarity=0.213 Sum_probs=236.3
Q ss_pred CCeEEEeeeecCCCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCC
Q 040581 22 VNSVAIPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGS 101 (394)
Q Consensus 22 ~~~~~~pl~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~ 101 (394)
++.-.+||.+ ..+.+|+++|.||||||+++|+|||||+++||+|..| .+..|.... .++++.++
T Consensus 125 ~~~~~v~L~n-~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C--------------~~~~C~~~~-~yd~s~Ss 188 (453)
T PTZ00147 125 SEFDNVELKD-LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKC--------------TTEGCETKN-LYDSSKSK 188 (453)
T ss_pred CCCCeeeccc-cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCC--------------CcccccCCC-ccCCccCc
Confidence 3456788877 4678999999999999999999999999999999886 223454433 24555555
Q ss_pred CCCCCCceeeEEeCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccc-c--CCCCCcceeeecCCCCCc--
Q 040581 102 DTTTNTCGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLL-Q--GLARGARGMLGLGRAPIS-- 176 (394)
Q Consensus 102 ~~~~~~~~~~~~Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~-~--~~~~~~~GIlGLg~~~~s-- 176 (394)
+|....+.+++.|+ +| .++|.+++|+|+|++. +++ ..|+++..... + ......|||||||++..+
T Consensus 189 T~~~~~~~f~i~Yg-~G-svsG~~~~DtVtiG~~-------~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~ 258 (453)
T PTZ00147 189 TYEKDGTKVEMNYV-SG-TVSGFFSKDLVTIGNL-------SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIG 258 (453)
T ss_pred ceEECCCEEEEEeC-CC-CEEEEEEEEEEEECCE-------EEE-EEEEEEEeccCcccccccccccceecccCCccccc
Confidence 56667889999998 66 5899999999999986 566 57888765411 0 112368999999997643
Q ss_pred ----hhhhhhcccCC-cceEEEeecCC---CCeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEecCC
Q 040581 177 ----LPSQLATGIGH-QRKFFMCLSSS---NGVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVTIEG 246 (394)
Q Consensus 177 ----~~~ql~~~~~i-~~~Fs~~L~~~---~G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~~~~ 246 (394)
++.+|..++.+ +++||+||.+. .|.|+|||+|. +.|++.|+|+... .+|.|.++ +.+++.... ..
T Consensus 259 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~-~~W~V~l~-~~vg~~~~~---~~ 333 (453)
T PTZ00147 259 SVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD-LYWQVDLD-VHFGNVSSE---KA 333 (453)
T ss_pred cCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC-ceEEEEEE-EEECCEecC---ce
Confidence 45688888888 67999999874 89999999874 7899999999754 89999998 577765322 45
Q ss_pred ceEEeccCceeeechHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCe
Q 040581 247 LTKLSTIVPYATMESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNS 326 (394)
Q Consensus 247 ~~iiDTGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y 326 (394)
.+||||||+++++|+++++++.+++.+.. .+.. ......|+. ..+|+|+|.|++ ..++|+|++|
T Consensus 334 ~aIiDSGTsli~lP~~~~~ai~~~l~~~~------~~~~--~~y~~~C~~------~~lP~~~f~f~g--~~~~L~p~~y 397 (453)
T PTZ00147 334 NVIVDSGTSVITVPTEFLNKFVESLDVFK------VPFL--PLYVTTCNN------TKLPTLEFRSPN--KVYTLEPEYY 397 (453)
T ss_pred eEEECCCCchhcCCHHHHHHHHHHhCCee------cCCC--CeEEEeCCC------CCCCeEEEEECC--EEEEECHHHh
Confidence 69999999999999999999988774321 1111 011235764 248999999987 8999999999
Q ss_pred EEEeCC--ceEEE-EEEeCCCCCCCeeEECccceeeeEEEEeCCCCeEEEEeCC
Q 040581 327 MVKVNE--EVVCL-GFLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFSTLR 377 (394)
Q Consensus 327 ~~~~~~--~~~C~-~~~~~~~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~~~ 377 (394)
+....+ ...|+ +++..... .+.||||++|||++|+|||.+++|||||+.+
T Consensus 398 i~~~~~~~~~~C~~~i~~~~~~-~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 398 LQPIEDIGSALCMLNIIPIDLE-KNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred eeccccCCCcEEEEEEEECCCC-CCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 976432 35797 56554322 3479999999999999999999999999743
No 16
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1e-49 Score=383.61 Aligned_cols=302 Identities=16% Similarity=0.209 Sum_probs=234.0
Q ss_pred CCCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeE
Q 040581 33 VSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFT 112 (394)
Q Consensus 33 ~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~ 112 (394)
..+..|+++|.||||+|+++|++||||+++||+|..|.- | ...|..+. .+++.+++++....|.+++
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~-----------~-~~~c~~~~-~y~~~~SsT~~~~~~~~~~ 70 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSP-----------L-YTACVTHN-LYDASDSSTYKENGTEFTI 70 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcC-----------c-chhhcccC-cCCCCCCeeeeECCEEEEE
Confidence 357899999999999999999999999999999888610 1 12354333 2444545556667899999
Q ss_pred EeCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccc-cCCCCCcceeeecCCCCC------chhhhhhccc
Q 040581 113 QNGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLL-QGLARGARGMLGLGRAPI------SLPSQLATGI 185 (394)
Q Consensus 113 ~Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GIlGLg~~~~------s~~~ql~~~~ 185 (394)
.|+ +| .++|.+++|+|++++. .+. +.||++..... .......+||||||+++. ++..+|.+++
T Consensus 71 ~Yg-~g-~~~G~~~~D~v~~g~~-------~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg 140 (326)
T cd05487 71 HYA-SG-TVKGFLSQDIVTVGGI-------PVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQG 140 (326)
T ss_pred EeC-Cc-eEEEEEeeeEEEECCE-------Eee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcC
Confidence 998 66 5899999999999986 443 78998876421 112346899999998654 3456788888
Q ss_pred CC-cceEEEeecCC-----CCeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEecCCceEEeccCcee
Q 040581 186 GH-QRKFFMCLSSS-----NGVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVTIEGLTKLSTIVPYA 257 (394)
Q Consensus 186 ~i-~~~Fs~~L~~~-----~G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~~~~~~iiDTGTt~~ 257 (394)
.| +++||+||.+. .|+|+|||.|. +.|++.|+|+... .+|.|++++|+|+++.+....+..++|||||+++
T Consensus 141 ~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~-~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGts~~ 219 (326)
T cd05487 141 VLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT-GFWQIQMKGVSVGSSTLLCEDGCTAVVDTGASFI 219 (326)
T ss_pred CCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC-ceEEEEecEEEECCEEEecCCCCEEEECCCccch
Confidence 77 78999999864 79999999864 8999999999765 8999999999999987754324569999999999
Q ss_pred eechHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEeCC--ceE
Q 040581 258 TMESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVNE--EVV 335 (394)
Q Consensus 258 ~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~--~~~ 335 (394)
++|+++++++++++.+... . .....+|... ..+|+|+|+|++ .+++|++++|++...+ +..
T Consensus 220 ~lP~~~~~~l~~~~~~~~~---------~-~~y~~~C~~~-----~~~P~i~f~fgg--~~~~v~~~~yi~~~~~~~~~~ 282 (326)
T cd05487 220 SGPTSSISKLMEALGAKER---------L-GDYVVKCNEV-----PTLPDISFHLGG--KEYTLSSSDYVLQDSDFSDKL 282 (326)
T ss_pred hCcHHHHHHHHHHhCCccc---------C-CCEEEecccc-----CCCCCEEEEECC--EEEEeCHHHhEEeccCCCCCE
Confidence 9999999999888753311 1 1112357643 358999999987 8999999999997643 457
Q ss_pred EE-EEEeCCC--CCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 336 CL-GFLDGGS--DLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 336 C~-~~~~~~~--~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
|+ ++..... ...+.||||++|||++|+|||++++|||||+
T Consensus 283 C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~ 325 (326)
T cd05487 283 CTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFAL 325 (326)
T ss_pred EEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeee
Confidence 86 5554321 1235799999999999999999999999995
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=9.2e-50 Score=393.96 Aligned_cols=306 Identities=15% Similarity=0.223 Sum_probs=233.2
Q ss_pred CeEEEeeeecCCCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 040581 23 NSVAIPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSD 102 (394)
Q Consensus 23 ~~~~~pl~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~ 102 (394)
+.-.+||.+ ..+.+|+++|.||||||+++|+|||||+++||+|..| .+..|...+ .++++.+++
T Consensus 125 ~~~~~~l~d-~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C--------------~~~~C~~~~-~yd~s~SsT 188 (450)
T PTZ00013 125 ENDVIELDD-VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKC--------------DSIGCSIKN-LYDSSKSKS 188 (450)
T ss_pred CCCceeeec-cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccC--------------CccccccCC-CccCccCcc
Confidence 345677766 4577999999999999999999999999999999886 223454433 244554555
Q ss_pred CCCCCceeeEEeCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccc-c--CCCCCcceeeecCCCCC----
Q 040581 103 TTTNTCGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLL-Q--GLARGARGMLGLGRAPI---- 175 (394)
Q Consensus 103 ~~~~~~~~~~~Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~-~--~~~~~~~GIlGLg~~~~---- 175 (394)
+....|.+.+.|+ +| .+.|.+++|+|++++. +++ ..|+++..... + .....+|||||||++..
T Consensus 189 ~~~~~~~~~i~YG-~G-sv~G~~~~Dtv~iG~~-------~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 258 (450)
T PTZ00013 189 YEKDGTKVDITYG-SG-TVKGFFSKDLVTLGHL-------SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGS 258 (450)
T ss_pred cccCCcEEEEEEC-Cc-eEEEEEEEEEEEECCE-------EEc-cEEEEEEeccccccceecccccceecccCCcccccc
Confidence 6667889999998 66 5999999999999986 555 57887665410 1 11236799999998754
Q ss_pred --chhhhhhcccCC-cceEEEeecCC---CCeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEecCCc
Q 040581 176 --SLPSQLATGIGH-QRKFFMCLSSS---NGVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVTIEGL 247 (394)
Q Consensus 176 --s~~~ql~~~~~i-~~~Fs~~L~~~---~G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~~~~~ 247 (394)
+++.+|++++.| +++||+||.+. .|.|+|||+|. +.|++.|+|+... .+|.|.++ +.++..... ...
T Consensus 259 ~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~-~yW~I~l~-v~~G~~~~~---~~~ 333 (450)
T PTZ00013 259 IDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD-LYWQIDLD-VHFGKQTMQ---KAN 333 (450)
T ss_pred CCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC-ceEEEEEE-EEECceecc---ccc
Confidence 356788888888 67899999864 89999999864 7899999999754 89999998 677654332 456
Q ss_pred eEEeccCceeeechHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeE
Q 040581 248 TKLSTIVPYATMESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSM 327 (394)
Q Consensus 248 ~iiDTGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~ 327 (394)
+++||||+++++|+++++++.+++..... +.. + .....|+. ..+|+|+|.|+| .+++|+|++|+
T Consensus 334 aIlDSGTSli~lP~~~~~~i~~~l~~~~~------~~~-~-~y~~~C~~------~~lP~i~F~~~g--~~~~L~p~~Yi 397 (450)
T PTZ00013 334 VIVDSGTTTITAPSEFLNKFFANLNVIKV------PFL-P-FYVTTCDN------KEMPTLEFKSAN--NTYTLEPEYYM 397 (450)
T ss_pred eEECCCCccccCCHHHHHHHHHHhCCeec------CCC-C-eEEeecCC------CCCCeEEEEECC--EEEEECHHHhe
Confidence 99999999999999999988877643211 100 0 11245753 248999999987 89999999999
Q ss_pred EEeC--CceEEE-EEEeCCCCCCCeeEECccceeeeEEEEeCCCCeEEEEeC
Q 040581 328 VKVN--EEVVCL-GFLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFSTL 376 (394)
Q Consensus 328 ~~~~--~~~~C~-~~~~~~~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~~ 376 (394)
.+.. ++..|+ ++++... ..+.||||++|||++|+|||.+++|||||+.
T Consensus 398 ~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a 448 (450)
T PTZ00013 398 NPLLDVDDTLCMITMLPVDI-DDNTFILGDPFMRKYFTVFDYDKESVGFAIA 448 (450)
T ss_pred ehhccCCCCeeEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEEe
Confidence 7532 345897 5554332 2357999999999999999999999999973
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.1e-49 Score=368.00 Aligned_cols=247 Identities=30% Similarity=0.536 Sum_probs=213.6
Q ss_pred cEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEeCC
Q 040581 37 QYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQNGI 116 (394)
Q Consensus 37 ~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 116 (394)
+|+++|+||||||++.|+|||||+++||+| |.|.+.|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----------------------------------------~~~~~~Y~- 38 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----------------------------------------CSYEYSYG- 38 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----------------------------------------CceEeEeC-
Confidence 599999999999999999999999999984 33788998
Q ss_pred CCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCCCCCcceeeecCCCCCchhhhhhcccCCcceEEEeec
Q 040581 117 SGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGLARGARGMLGLGRAPISLPSQLATGIGHQRKFFMCLS 196 (394)
Q Consensus 117 ~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~L~ 196 (394)
|++.++|.+++|+|.|++.+ .+++++.|||+..... ......+||||||+...|++.||..++ ++||+||.
T Consensus 39 dg~~~~G~~~~D~v~~g~~~-----~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs~~l~ 109 (265)
T cd05476 39 DGSSTSGVLATETFTFGDSS-----VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG---NKFSYCLV 109 (265)
T ss_pred CCceeeeeEEEEEEEecCCC-----CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc---CeeEEEcc
Confidence 89999999999999999862 1467899999998732 334578999999999999999998766 79999998
Q ss_pred CC-----CCeEEEcCCCC-CCCCceEEecccC---CCceEEEEeEEEEcCEEEEEe---------cCCceEEeccCceee
Q 040581 197 SS-----NGVVLSHHTST-TKLPLMYTPLIGK---SQDYFINVKSIKINGNPLSVT---------IEGLTKLSTIVPYAT 258 (394)
Q Consensus 197 ~~-----~G~l~fGg~~~-~~g~~~~tpl~~~---~~~y~v~l~~i~v~~~~~~~~---------~~~~~iiDTGTt~~~ 258 (394)
+. +|+|+|||+|. +.+++.|+|++.+ +.+|.|+|++|+|+++.+.++ ....+||||||++++
T Consensus 110 ~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~ 189 (265)
T cd05476 110 PHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTY 189 (265)
T ss_pred CCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceE
Confidence 63 89999999864 7899999999975 389999999999999987531 145799999999999
Q ss_pred echHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEeCCceEEEE
Q 040581 259 MESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVNEEVVCLG 338 (394)
Q Consensus 259 lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~~~~C~~ 338 (394)
||+++| |+|+|+|++ +++|.+++++|++...++..|++
T Consensus 190 lp~~~~-----------------------------------------P~i~~~f~~-~~~~~i~~~~y~~~~~~~~~C~~ 227 (265)
T cd05476 190 LPDPAY-----------------------------------------PDLTLHFDG-GADLELPPENYFVDVGEGVVCLA 227 (265)
T ss_pred cCcccc-----------------------------------------CCEEEEECC-CCEEEeCcccEEEECCCCCEEEE
Confidence 997753 689999995 38999999999997666779999
Q ss_pred EEeCCCCCCCeeEECccceeeeEEEEeCCCCeEEEEeCCCCCC
Q 040581 339 FLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFSTLRGTCC 381 (394)
Q Consensus 339 ~~~~~~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~~~~~~C 381 (394)
++.... .+.+|||++|||++|+|||.+++||||| +.+|
T Consensus 228 ~~~~~~--~~~~ilG~~fl~~~~~vFD~~~~~iGfa---~~~C 265 (265)
T cd05476 228 ILSSSS--GGVSILGNIQQQNFLVEYDLENSRLGFA---PADC 265 (265)
T ss_pred EecCCC--CCcEEEChhhcccEEEEEECCCCEEeee---cCCC
Confidence 887642 4579999999999999999999999999 6767
No 19
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=5.1e-48 Score=377.14 Aligned_cols=311 Identities=16% Similarity=0.204 Sum_probs=227.4
Q ss_pred cEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEeCC
Q 040581 37 QYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQNGI 116 (394)
Q Consensus 37 ~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 116 (394)
.|+++|.||||+|+++|+|||||+++||+|..|+. |+. .+++.+++++....|.|++.|+
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~----------------~~~---~f~~~~SsT~~~~~~~~~i~Yg- 62 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF----------------IHT---YFHRELSSTYRDLGKGVTVPYT- 62 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc----------------ccc---cCCchhCcCcccCCceEEEEEC-
Confidence 69999999999999999999999999999987631 000 1222233335555788999998
Q ss_pred CCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCC-CCCcceeeecCCCCCc--------hhhhhhcccCC
Q 040581 117 SGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGL-ARGARGMLGLGRAPIS--------LPSQLATGIGH 187 (394)
Q Consensus 117 ~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~~GIlGLg~~~~s--------~~~ql~~~~~i 187 (394)
+| .++|.+++|+|+|++... ..+ .+.|+++........ ....|||||||++.++ +..+|.+++.+
T Consensus 63 ~G-s~~G~~~~D~v~ig~~~~----~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~ 136 (364)
T cd05473 63 QG-SWEGELGTDLVSIPKGPN----VTF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI 136 (364)
T ss_pred cc-eEEEEEEEEEEEECCCCc----cce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC
Confidence 65 579999999999986411 122 133455544310011 1257999999987543 45577777777
Q ss_pred cceEEEeecC------------CCCeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEe---c-CCceE
Q 040581 188 QRKFFMCLSS------------SNGVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVT---I-EGLTK 249 (394)
Q Consensus 188 ~~~Fs~~L~~------------~~G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~---~-~~~~i 249 (394)
+++||++|.. ..|.|+|||+|. +.+++.|+|+... .+|.|.+++|+|+++.+..+ + ...+|
T Consensus 137 ~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~-~~~~v~l~~i~vg~~~~~~~~~~~~~~~~i 215 (364)
T cd05473 137 PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE-WYYEVIILKLEVGGQSLNLDCKEYNYDKAI 215 (364)
T ss_pred ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc-eeEEEEEEEEEECCEecccccccccCccEE
Confidence 7799998731 179999999864 7999999999865 89999999999999987643 1 23699
Q ss_pred EeccCceeeechHHHHHHHHHHHHHHHhcccCceecC-C--CCCCCceecccCCCCCCCCeEEEEEcCc----ceEEEEc
Q 040581 250 LSTIVPYATMESSIYATFAKAFTKAAAAASRDMSVVA-P--VAPFSLCFSSKGFNGSAVPVIDFVLQSE----MVKWRFY 322 (394)
Q Consensus 250 iDTGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~-~--~~~~~~C~~~~~~~~~~~P~i~f~f~g~----~~~~~i~ 322 (394)
|||||++++||+++|+++++++.++.. ....+ . ......|+.........+|+|+|+|++. ..+++|+
T Consensus 216 vDSGTs~~~lp~~~~~~l~~~l~~~~~-----~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~ 290 (364)
T cd05473 216 VDSGTTNLRLPVKVFNAAVDAIKAASL-----IEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITIL 290 (364)
T ss_pred EeCCCcceeCCHHHHHHHHHHHHhhcc-----cccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEEC
Confidence 999999999999999999999987643 11111 1 1112468765432224699999999862 3578999
Q ss_pred cCCeEEEeC---CceEEEEEEeCCCCCCCeeEECccceeeeEEEEeCCCCeEEEEeCCCCCCCCC
Q 040581 323 GSNSMVKVN---EEVVCLGFLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFSTLRGTCCSDF 384 (394)
Q Consensus 323 ~~~y~~~~~---~~~~C~~~~~~~~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~~~~~~C~~~ 384 (394)
|++|+.... .+..|+.+..... .+.||||+.|||++|+|||.+++||||| +++|.+.
T Consensus 291 p~~Y~~~~~~~~~~~~C~~~~~~~~--~~~~ILG~~flr~~yvvfD~~~~rIGfa---~~~C~~~ 350 (364)
T cd05473 291 PQLYLRPVEDHGTQLDCYKFAISQS--TNGTVIGAVIMEGFYVVFDRANKRVGFA---VSTCAEH 350 (364)
T ss_pred HHHhhhhhccCCCcceeeEEeeecC--CCceEEeeeeEcceEEEEECCCCEEeeE---ecccccc
Confidence 999998642 2468976433222 2468999999999999999999999999 7789873
No 20
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=4.2e-47 Score=360.56 Aligned_cols=263 Identities=18% Similarity=0.269 Sum_probs=220.3
Q ss_pred cEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEeCC
Q 040581 37 QYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQNGI 116 (394)
Q Consensus 37 ~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 116 (394)
.|+++|.||||+|+++|++||||+++||+ .|++.|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-------------------------------------------~~~~~Y~- 37 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-------------------------------------------DFSISYG- 37 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-------------------------------------------eeEEEec-
Confidence 69999999999999999999999999996 1778998
Q ss_pred CCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCCCCCcceeeecCCCCC-----------chhhhhhccc
Q 040581 117 SGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGLARGARGMLGLGRAPI-----------SLPSQLATGI 185 (394)
Q Consensus 117 ~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql~~~~ 185 (394)
+|+.+.|.+++|+|++++. +++++.|||++.. ...+||||||+.+. +++.||.+++
T Consensus 38 ~g~~~~G~~~~D~v~~g~~-------~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 38 DGTSASGTWGTDTVSIGGA-------TVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred cCCcEEEEEEEEEEEECCe-------EecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 8899999999999999986 6789999999875 35799999998765 6889999888
Q ss_pred CC-cceEEEeecCC---CCeEEEcCCC--CCCCCceEEecccCC-----CceEEEEeEEEEcCEEEEEe---cCCceEEe
Q 040581 186 GH-QRKFFMCLSSS---NGVVLSHHTS--TTKLPLMYTPLIGKS-----QDYFINVKSIKINGNPLSVT---IEGLTKLS 251 (394)
Q Consensus 186 ~i-~~~Fs~~L~~~---~G~l~fGg~~--~~~g~~~~tpl~~~~-----~~y~v~l~~i~v~~~~~~~~---~~~~~iiD 251 (394)
.| ++.||+||.+. +|.|+|||+| ++.+++.|+|+...+ .+|.|.+++|+++++.+..+ ....++||
T Consensus 105 ~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiD 184 (295)
T cd05474 105 LIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLD 184 (295)
T ss_pred cccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEEC
Confidence 87 68999999984 8999999986 478999999998764 68999999999999876422 25679999
Q ss_pred ccCceeeechHHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEeC
Q 040581 252 TIVPYATMESSIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVN 331 (394)
Q Consensus 252 TGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~ 331 (394)
|||++++||++++++|.+++.+.... . .......|+... . |+|+|+|+| ++++||+++|+++..
T Consensus 185 SGt~~~~lP~~~~~~l~~~~~~~~~~-------~-~~~~~~~C~~~~-----~-p~i~f~f~g--~~~~i~~~~~~~~~~ 248 (295)
T cd05474 185 SGTTLTYLPSDIVDAIAKQLGATYDS-------D-EGLYVVDCDAKD-----D-GSLTFNFGG--ATISVPLSDLVLPAS 248 (295)
T ss_pred CCCccEeCCHHHHHHHHHHhCCEEcC-------C-CcEEEEeCCCCC-----C-CEEEEEECC--eEEEEEHHHhEeccc
Confidence 99999999999999999988654321 1 111234676542 2 999999987 999999999998764
Q ss_pred C----ceEEE-EEEeCCCCCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 332 E----EVVCL-GFLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 332 ~----~~~C~-~~~~~~~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
. +..|+ ++.+... +.||||++|||++|+|||.+++|||||+
T Consensus 249 ~~~~~~~~C~~~i~~~~~---~~~iLG~~fl~~~y~vfD~~~~~ig~a~ 294 (295)
T cd05474 249 TDDGGDGACYLGIQPSTS---DYNILGDTFLRSAYVVYDLDNNEISLAQ 294 (295)
T ss_pred cCCCCCCCeEEEEEeCCC---CcEEeChHHhhcEEEEEECCCCEEEeec
Confidence 2 45675 6665442 4799999999999999999999999995
No 21
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.9e-46 Score=351.86 Aligned_cols=264 Identities=18% Similarity=0.189 Sum_probs=201.3
Q ss_pred EEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC-CCceeeEEeCC
Q 040581 38 YVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTT-NTCGVFTQNGI 116 (394)
Q Consensus 38 Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~ 116 (394)
|+++|+||||||++.|+|||||+++||+|..|.. | .|.... .+++.+++++.. +.|.+.+.|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~-----------~---~~~~~~-~y~~~~Sst~~~~~~~~~~i~Y~- 64 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPA-----------A---QQGGHK-LYDPSKSSTAKLLPGATWSISYG- 64 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCc-----------h---hhccCC-cCCCccCccceecCCcEEEEEeC-
Confidence 7899999999999999999999999999998720 1 111111 122333333432 4688999998
Q ss_pred CCceEeeEEEEEEEEecccCCCCcceecccEEEecccCcccc-CCCCCcceeeecCCCCCc---------hhhhhhcccC
Q 040581 117 SGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQ-GLARGARGMLGLGRAPIS---------LPSQLATGIG 186 (394)
Q Consensus 117 ~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~~s---------~~~ql~~~~~ 186 (394)
+|+.+.|.+++|+|+|++. +++++.||+++..... ......+||||||++..+ +..+|.+++.
T Consensus 65 ~G~~~~G~~~~D~v~ig~~-------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~ 137 (278)
T cd06097 65 DGSSASGIVYTDTVSIGGV-------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD 137 (278)
T ss_pred CCCeEEEEEEEEEEEECCE-------EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc
Confidence 8888999999999999986 7789999999875211 122578999999987543 3445555543
Q ss_pred CcceEEEeecCC-CCeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEecCCceEEeccCceeeechHH
Q 040581 187 HQRKFFMCLSSS-NGVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVTIEGLTKLSTIVPYATMESSI 263 (394)
Q Consensus 187 i~~~Fs~~L~~~-~G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~ 263 (394)
++.||+||.+. .|+|+|||+|+ +.|++.|+|+.....+|.|++++|+|+++.........++|||||+++++|+++
T Consensus 138 -~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~ 216 (278)
T cd06097 138 -APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAI 216 (278)
T ss_pred -CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHH
Confidence 68999999975 99999999875 899999999987458999999999999984332225679999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEeCCceEEEEEEeCC
Q 040581 264 YATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVNEEVVCLGFLDGG 343 (394)
Q Consensus 264 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~~~~C~~~~~~~ 343 (394)
++++.+++.+.. +... ..+|..++.. .+|+|+|+|
T Consensus 217 ~~~l~~~l~g~~------~~~~------~~~~~~~C~~--~~P~i~f~~------------------------------- 251 (278)
T cd06097 217 VEAYYSQVPGAY------YDSE------YGGWVFPCDT--TLPDLSFAV------------------------------- 251 (278)
T ss_pred HHHHHHhCcCCc------ccCC------CCEEEEECCC--CCCCEEEEE-------------------------------
Confidence 999988773221 1110 1122222221 279999888
Q ss_pred CCCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 344 SDLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 344 ~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
.||||++|||++|+|||++++|||||+
T Consensus 252 -----~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -----FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -----EEEEcchhhCceeEEEcCCCceeeecC
Confidence 489999999999999999999999994
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.2e-45 Score=351.91 Aligned_cols=298 Identities=21% Similarity=0.303 Sum_probs=228.4
Q ss_pred cEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEeCC
Q 040581 37 QYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQNGI 116 (394)
Q Consensus 37 ~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 116 (394)
+|+++|.||||+|+++|++||||+++||++..|.. | ..|.... .+++.++.++....+.+.+.|+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~-----------~--~~~~~~~-~y~~~~S~t~~~~~~~~~~~y~- 65 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNS-----------C--SSCASSG-FYNPSKSSTFSNQGKPFSISYG- 65 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECS-----------H--THHCTSC--BBGGGSTTEEEEEEEEEEEET-
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccc-----------c--ccccccc-ccccccccccccceeeeeeecc-
Confidence 59999999999999999999999999999888611 0 1222211 1222222335555678999998
Q ss_pred CCceEeeEEEEEEEEecccCCCCcceecccEEEecccCcccc-CCCCCcceeeecCCCC-------CchhhhhhcccCC-
Q 040581 117 SGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQ-GLARGARGMLGLGRAP-------ISLPSQLATGIGH- 187 (394)
Q Consensus 117 ~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~-------~s~~~ql~~~~~i- 187 (394)
+|. ++|.+++|++.|++. .+.++.||++...... ......+||||||++. .+++.+|.+++.|
T Consensus 66 ~g~-~~G~~~~D~v~ig~~-------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~ 137 (317)
T PF00026_consen 66 DGS-VSGNLVSDTVSIGGL-------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLIS 137 (317)
T ss_dssp TEE-EEEEEEEEEEEETTE-------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSS
T ss_pred Ccc-cccccccceEeeeec-------cccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcccc
Confidence 655 999999999999987 7778999998884111 1235789999999642 4677899999888
Q ss_pred cceEEEeecCCC---CeEEEcCCCC--CCCCceEEecccCCCceEEEEeEEEEcCEEEEEecCCceEEeccCceeeechH
Q 040581 188 QRKFFMCLSSSN---GVVLSHHTST--TKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVTIEGLTKLSTIVPYATMESS 262 (394)
Q Consensus 188 ~~~Fs~~L~~~~---G~l~fGg~~~--~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~ 262 (394)
+++||++|.+.. |.|+|||.|. +.+++.|+|+... .+|.|.+++|.++++.........++||||+++++||++
T Consensus 138 ~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~-~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~lp~~ 216 (317)
T PF00026_consen 138 SNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS-GYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYLPRS 216 (317)
T ss_dssp SSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST-TTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEEEHH
T ss_pred ccccceeeeecccccchheeeccccccccCceeccCcccc-cccccccccccccccccccccceeeecccccccccccch
Confidence 788999999985 9999999864 7899999999954 999999999999999322211346999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEeCCc--eEEEEEE
Q 040581 263 IYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVNEE--VVCLGFL 340 (394)
Q Consensus 263 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~~--~~C~~~~ 340 (394)
++++|++++..... . .....+|... ..+|.++|.|++ .+++|+|++|+.+..+. ..|+..+
T Consensus 217 ~~~~i~~~l~~~~~---------~-~~~~~~c~~~-----~~~p~l~f~~~~--~~~~i~~~~~~~~~~~~~~~~C~~~i 279 (317)
T PF00026_consen 217 IFDAIIKALGGSYS---------D-GVYSVPCNST-----DSLPDLTFTFGG--VTFTIPPSDYIFKIEDGNGGYCYLGI 279 (317)
T ss_dssp HHHHHHHHHTTEEE---------C-SEEEEETTGG-----GGSEEEEEEETT--EEEEEEHHHHEEEESSTTSSEEEESE
T ss_pred hhHHHHhhhccccc---------c-eeEEEecccc-----cccceEEEeeCC--EEEEecchHhcccccccccceeEeee
Confidence 99999988865432 0 1111244432 358999999997 89999999999987653 3786444
Q ss_pred eC-C-CCCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 341 DG-G-SDLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 341 ~~-~-~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
.. . ....+.++||.+|||++|+|||.|++|||||+
T Consensus 280 ~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~ 316 (317)
T PF00026_consen 280 QPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQ 316 (317)
T ss_dssp EEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred ecccccccCCceEecHHHhhceEEEEeCCCCEEEEec
Confidence 33 1 12356799999999999999999999999995
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=8.7e-44 Score=335.19 Aligned_cols=267 Identities=21% Similarity=0.294 Sum_probs=212.7
Q ss_pred EEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEeCCC
Q 040581 38 YVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQNGIS 117 (394)
Q Consensus 38 Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 117 (394)
|+++|.||||+|++.|++||||+++||+|..|.. |....|... .+.+..++.|.+..|.+.+.|+ +
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~-----------~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~Y~-~ 66 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS-----------CSCQKHPRF--KYDSSKSSTYKDTGCTFSITYG-D 66 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc-----------cccccCCCC--ccCccCCceeecCCCEEEEEEC-C
Confidence 7899999999999999999999999999998721 111011100 0111222336677899999998 5
Q ss_pred CceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCCCCCcceeeecCCCC------CchhhhhhcccCC-cce
Q 040581 118 GLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGLARGARGMLGLGRAP------ISLPSQLATGIGH-QRK 190 (394)
Q Consensus 118 g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~~~i-~~~ 190 (394)
+.++|.+++|++++++. .++++.|||++...........+||||||+.. .+++.||.+++.| +++
T Consensus 67 -g~~~g~~~~D~v~~~~~-------~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~ 138 (283)
T cd05471 67 -GSVTGGLGTDTVTIGGL-------TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPV 138 (283)
T ss_pred -CeEEEEEEEeEEEECCE-------EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCE
Confidence 68999999999999987 67899999999873222346789999999987 7899999999876 789
Q ss_pred EEEeecC-----CCCeEEEcCCCC--CCCCceEEecccC-CCceEEEEeEEEEcCEEEEEe-cCCceEEeccCceeeech
Q 040581 191 FFMCLSS-----SNGVVLSHHTST--TKLPLMYTPLIGK-SQDYFINVKSIKINGNPLSVT-IEGLTKLSTIVPYATMES 261 (394)
Q Consensus 191 Fs~~L~~-----~~G~l~fGg~~~--~~g~~~~tpl~~~-~~~y~v~l~~i~v~~~~~~~~-~~~~~iiDTGTt~~~lp~ 261 (394)
||+||.+ ..|.|+|||.+. +.+++.|+|++.. +.+|.|.+++|+++++..... ....++|||||++++||+
T Consensus 139 Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~ 218 (283)
T cd05471 139 FSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPS 218 (283)
T ss_pred EEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCH
Confidence 9999997 399999999875 6899999999985 489999999999999741111 256799999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCceecCCCCCCCceecccCCCCCCCCeEEEEEcCcceEEEEccCCeEEEeCCceEEEEEEe
Q 040581 262 SIYATFAKAFTKAAAAASRDMSVVAPVAPFSLCFSSKGFNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVNEEVVCLGFLD 341 (394)
Q Consensus 262 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~~~~C~~~~~ 341 (394)
++|+++.+++.+... . ...|+...+.....+|+|+|+|
T Consensus 219 ~~~~~l~~~~~~~~~-------~------~~~~~~~~~~~~~~~p~i~f~f----------------------------- 256 (283)
T cd05471 219 SVYDAILKALGAAVS-------S------SDGGYGVDCSPCDTLPDITFTF----------------------------- 256 (283)
T ss_pred HHHHHHHHHhCCccc-------c------cCCcEEEeCcccCcCCCEEEEE-----------------------------
Confidence 999999998876643 0 1223333333345699999999
Q ss_pred CCCCCCCeeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 342 GGSDLTSSIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 342 ~~~~~~~~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
.+|||++|||++|++||.+++|||||+
T Consensus 257 -------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 479999999999999999999999983
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=9.1e-30 Score=220.23 Aligned_cols=158 Identities=40% Similarity=0.650 Sum_probs=126.9
Q ss_pred EEEEEeeCCCCCeEEEEEEcCCCceeeeCCCC-CCCCCCCCCCCCCCCCcccCCCCCC-CCCCCCCCCCCCCceeeEEeC
Q 040581 38 YVAKIHHGVSQVPINLVLDLGGPLTWVDCDSS-ADVSSSSSRRLIPSQSIQCSRSGKS-PVPGNGSDTTTNTCGVFTQNG 115 (394)
Q Consensus 38 Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c-~~p~~Sst~~~~~c~~~~C~~~~~~-~~~~~~~~~~~~~~~~~~~Y~ 115 (394)
|+++|.||||+|++.|++||||.++|++|..- ..|++|+||+.++|.++.|...... .... +.+..|.|.+.|+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~----~~~~~C~y~~~y~ 76 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCPDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCC----CSNNSCPYSQSYG 76 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----STT-TTSSBEC-BTTSHHHHHCTSSBTCCT----CESSEEEEEEEET
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCCCcccCCccCCcccccCCCCcchhhcccccccCC----CCcCcccceeecC
Confidence 89999999999999999999999999999221 2388999999999999999866432 1112 4568999999998
Q ss_pred CCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCCCCCcceeeecCCCCCchhhhhhcccCCcceEEEee
Q 040581 116 ISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGLARGARGMLGLGRAPISLPSQLATGIGHQRKFFMCL 195 (394)
Q Consensus 116 ~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~L 195 (394)
+++.++|.+++|+++++..... ...+.++.|||++.. .+.....+||||||+.+.||+.||..+ ..++||+||
T Consensus 77 -~~s~~~G~l~~D~~~~~~~~~~--~~~~~~~~FGC~~~~--~g~~~~~~GilGLg~~~~Sl~sQl~~~--~~~~FSyCL 149 (164)
T PF14543_consen 77 -DGSSSSGFLASDTLTFGSSSGG--SNSVPDFIFGCATSN--SGLFYGADGILGLGRGPLSLPSQLASS--SGNKFSYCL 149 (164)
T ss_dssp -TTEEEEEEEEEEEEEEEEESSS--SEEEEEEEEEEE-GG--GTSSTTEEEEEE-SSSTTSHHHHHHHH----SEEEEEB
T ss_pred -CCccccCceEEEEEEecCCCCC--CceeeeEEEEeeecc--ccCCcCCCcccccCCCcccHHHHHHHh--cCCeEEEEC
Confidence 8999999999999999987421 136778999999998 466668999999999999999999877 459999999
Q ss_pred cC-C---CCeEEEcC
Q 040581 196 SS-S---NGVVLSHH 206 (394)
Q Consensus 196 ~~-~---~G~l~fGg 206 (394)
.+ + .|.|+||+
T Consensus 150 ~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 150 PSSSPSSSGFLSFGD 164 (164)
T ss_dssp -S-SSSSEEEEEECS
T ss_pred CCCCCCCCEEEEeCc
Confidence 99 2 99999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.93 E-value=3.2e-25 Score=191.56 Aligned_cols=148 Identities=24% Similarity=0.465 Sum_probs=115.9
Q ss_pred ceEEEEeEEEEcCEEEEEe---c-----CCceEEeccCceeeechHHHHHHHHHHHHHHHhcccCcee-cCCCCCCCcee
Q 040581 225 DYFINVKSIKINGNPLSVT---I-----EGLTKLSTIVPYATMESSIYATFAKAFTKAAAAASRDMSV-VAPVAPFSLCF 295 (394)
Q Consensus 225 ~y~v~l~~i~v~~~~~~~~---~-----~~~~iiDTGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~~~~C~ 295 (394)
+|.|+|++|+||++++.++ + .++++|||||++++||+++|+++++++.+.+.. .++.+ ......+..||
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~--~~~~~~~~~~~~~~~Cy 78 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGA--PGVSREAPPFSGFDLCY 78 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHT--CT--CEE---TT-S-EE
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhh--cccccccccCCCCCcee
Confidence 5999999999999999876 2 467999999999999999999999999999884 11222 23456778999
Q ss_pred cccC----CCCCCCCeEEEEEcCcceEEEEccCCeEEEeCCceEEEEEEeCCCCCCCeeEECccceeeeEEEEeCCCCeE
Q 040581 296 SSKG----FNGSAVPVIDFVLQSEMVKWRFYGSNSMVKVNEEVVCLGFLDGGSDLTSSIVLGGFQLEDNVMDFDLGTSML 371 (394)
Q Consensus 296 ~~~~----~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ilG~~flr~~yvvFD~~~~rI 371 (394)
+.+. .....+|+|+|+|.+ +++++++|++|++...++..|+++.....+..+..|||..+|+++.++||++++||
T Consensus 79 ~~~~~~~~~~~~~~P~i~l~F~~-ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~i 157 (161)
T PF14541_consen 79 NLSSFGVNRDWAKFPTITLHFEG-GADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRI 157 (161)
T ss_dssp EGGCS-EETTEESS--EEEEETT-SEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEE
T ss_pred eccccccccccccCCeEEEEEeC-CcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEE
Confidence 9988 245789999999997 58999999999999988899999998832234679999999999999999999999
Q ss_pred EEEe
Q 040581 372 GFST 375 (394)
Q Consensus 372 Gfa~ 375 (394)
||++
T Consensus 158 gF~~ 161 (161)
T PF14541_consen 158 GFAP 161 (161)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9985
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.82 E-value=1.4e-19 Score=145.86 Aligned_cols=108 Identities=25% Similarity=0.342 Sum_probs=79.7
Q ss_pred EEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEeCCCCc
Q 040581 40 AKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQNGISGL 119 (394)
Q Consensus 40 ~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~g~ 119 (394)
++|.||||||++.|+|||||+++||+|..|.. |. |......+++..++.+....|.|.+.|+ +|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~-----------~~---~~~~~~~~~~~~sst~~~~~~~~~~~Y~-~g- 64 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQS-----------LA---IYSHSSYDDPSASSTYSDNGCTFSITYG-TG- 64 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCC-----------cc---cccccccCCcCCCCCCCCCCcEEEEEeC-CC-
Confidence 47999999999999999999999999998721 11 1111111133333335566899999998 65
Q ss_pred eEeeEEEEEEEEecccCCCCcceecccEEEecccCccccC-CCCCcceeeec
Q 040581 120 VTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQG-LARGARGMLGL 170 (394)
Q Consensus 120 ~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~~GIlGL 170 (394)
.+.|.+++|+|+|++. .++++.|||+....... .....+|||||
T Consensus 65 ~~~g~~~~D~v~ig~~-------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 65 SLSGGLSTDTVSIGDI-------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred eEEEEEEEEEEEECCE-------EECCEEEEEEEecCCccccccccccccCC
Confidence 6789999999999886 67899999998873211 22578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.00 E-value=2.4e-05 Score=60.71 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=63.8
Q ss_pred ccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEeC
Q 040581 36 LQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQNG 115 (394)
Q Consensus 36 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 115 (394)
+.|++++.|+. +++++++|||++.+|+..... + .+... ........+...
T Consensus 1 ~~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~~---------~-------~l~~~------------~~~~~~~~~~~~ 50 (96)
T cd05483 1 GHFVVPVTING--QPVRFLLDTGASTTVISEELA---------E-------RLGLP------------LTLGGKVTVQTA 50 (96)
T ss_pred CcEEEEEEECC--EEEEEEEECCCCcEEcCHHHH---------H-------HcCCC------------ccCCCcEEEEec
Confidence 36899999995 999999999999999964320 0 01100 001223555665
Q ss_pred CCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCCCCCcceeeecCC
Q 040581 116 ISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGLARGARGMLGLGR 172 (394)
Q Consensus 116 ~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~ 172 (394)
+|.........+.+++++. +++++.+...... .. ..+||||+.+
T Consensus 51 -~G~~~~~~~~~~~i~ig~~-------~~~~~~~~v~d~~--~~---~~~gIlG~d~ 94 (96)
T cd05483 51 -NGRVRAARVRLDSLQIGGI-------TLRNVPAVVLPGD--AL---GVDGLLGMDF 94 (96)
T ss_pred -CCCccceEEEcceEEECCc-------EEeccEEEEeCCc--cc---CCceEeChHH
Confidence 6666777777899999986 6677777766554 11 5899999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.29 E-value=0.0025 Score=52.04 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=65.5
Q ss_pred EeeeecCCCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 040581 27 IPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTN 106 (394)
Q Consensus 27 ~pl~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~ 106 (394)
+||+++ .+|.|++++.|.. +++.+++|||++.+-++... -+..+. . ....
T Consensus 2 ~~i~~~-~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~-------------------A~~Lgl--~------~~~~ 51 (121)
T TIGR02281 2 VQLAKD-GDGHFYATGRVNG--RNVRFLVDTGATSVALNEED-------------------AQRLGL--D------LNRL 51 (121)
T ss_pred EEEEEc-CCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHH-------------------HHHcCC--C------cccC
Confidence 677874 7799999999987 79999999999999885332 011100 0 0000
Q ss_pred CceeeEEeCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCCCCCcceeeecC
Q 040581 107 TCGVFTQNGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGLARGARGMLGLG 171 (394)
Q Consensus 107 ~~~~~~~Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg 171 (394)
.-...+.-. .|......+.-|.+.+++. .++|+.+.+.... ...+|+||+.
T Consensus 52 ~~~~~~~ta-~G~~~~~~~~l~~l~iG~~-------~~~nv~~~v~~~~------~~~~~LLGm~ 102 (121)
T TIGR02281 52 GYTVTVSTA-NGQIKAARVTLDRVAIGGI-------VVNDVDAMVAEGG------ALSESLLGMS 102 (121)
T ss_pred CceEEEEeC-CCcEEEEEEEeCEEEECCE-------EEeCcEEEEeCCC------cCCceEcCHH
Confidence 112222222 4555555568899999997 6778887766543 1237999986
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.43 E-value=0.029 Score=42.46 Aligned_cols=89 Identities=16% Similarity=0.258 Sum_probs=52.6
Q ss_pred EEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEeCCCCc
Q 040581 40 AKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQNGISGL 119 (394)
Q Consensus 40 ~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~g~ 119 (394)
+++.|+. +++.+++|||++.+.+...- ++..+. ... .......+.-. +|.
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~~-------------------~~~l~~--~~~------~~~~~~~~~~~-~g~ 50 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRSL-------------------AKKLGL--KPR------PKSVPISVSGA-GGS 50 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHHH-------------------HHHcCC--CCc------CCceeEEEEeC-CCC
Confidence 3677776 89999999999987775221 111100 000 00112333322 455
Q ss_pred eEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCCCCCcceeeecC
Q 040581 120 VTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGLARGARGMLGLG 171 (394)
Q Consensus 120 ~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg 171 (394)
.......-+.+.+++. ++.++.|-..... ...+||||+-
T Consensus 51 ~~~~~~~~~~i~ig~~-------~~~~~~~~v~~~~------~~~~~iLG~d 89 (90)
T PF13650_consen 51 VTVYRGRVDSITIGGI-------TLKNVPFLVVDLG------DPIDGILGMD 89 (90)
T ss_pred EEEEEEEEEEEEECCE-------EEEeEEEEEECCC------CCCEEEeCCc
Confidence 5556677778999886 5666666655522 3578999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.20 E-value=0.18 Score=41.23 Aligned_cols=92 Identities=12% Similarity=0.156 Sum_probs=56.7
Q ss_pred CCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC-CCceee-
Q 040581 34 STLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTT-NTCGVF- 111 (394)
Q Consensus 34 ~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~-~~~~~~- 111 (394)
....+++++.|+. +++.+++|||++..++.-..+ +..+ ... ....+.
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~~a-------------------~~lg----------l~~~~~~~~~~ 61 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMSKACA-------------------EKCG----------LMRLIDKRFQG 61 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeCHHHH-------------------HHcC----------CccccCcceEE
Confidence 4567899999997 889999999999999853221 1110 000 011122
Q ss_pred EEeCCCCceEeeEEEEEEEEecccCCCCcceecccEEEecccCccccCCCCCcceeeecC
Q 040581 112 TQNGISGLVTTGDLAEDTIAVRSELEDPSITAVDQFLFSCAPTFLLQGLARGARGMLGLG 171 (394)
Q Consensus 112 ~~Y~~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg 171 (394)
...+.++....|....+.+.+++. .++ +.|.+.... ..|+|||+-
T Consensus 62 ~~~g~g~~~~~g~~~~~~l~i~~~-------~~~-~~~~Vl~~~-------~~d~ILG~d 106 (124)
T cd05479 62 IAKGVGTQKILGRIHLAQVKIGNL-------FLP-CSFTVLEDD-------DVDFLIGLD 106 (124)
T ss_pred EEecCCCcEEEeEEEEEEEEECCE-------Eee-eEEEEECCC-------CcCEEecHH
Confidence 222212445677777788898886 333 555544332 579999985
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=94.76 E-value=4.2 Score=39.22 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=30.0
Q ss_pred CCeEEEc-CCC---CCCCCceEEecccCCCceEEEEeEEEEcCEEEEEecCCceEEeccCceeeechH
Q 040581 199 NGVVLSH-HTS---TTKLPLMYTPLIGKSQDYFINVKSIKINGNPLSVTIEGLTKLSTIVPYATMESS 262 (394)
Q Consensus 199 ~G~l~fG-g~~---~~~g~~~~tpl~~~~~~y~v~l~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~ 262 (394)
.|.|+|| |.. ...+.....+.... .+. + -.++|+... ...||||+.-.++|+.
T Consensus 216 tG~LiFGIgTQsNN~l~~~~~~~~~~~~-G~~----t-t~~~G~t~~-----~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 216 TGTLIFGIGTQSNNALPSGATVLTTDSN-GDF----T-TTFNGQTYS-----ASFFDSGSNGYFFPDS 272 (370)
T ss_pred eEEEEEecCCcccCcccccceEEeecCC-ceE----E-EEecCceee-----eeeEecCCceeeccCC
Confidence 8999999 542 12332333333322 321 1 234445433 2599999999999865
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.65 E-value=0.24 Score=40.40 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.8
Q ss_pred eeEECccceeeeEEEEeCCCCeEE
Q 040581 349 SIVLGGFQLEDNVMDFDLGTSMLG 372 (394)
Q Consensus 349 ~~ilG~~flr~~yvvFD~~~~rIG 372 (394)
..|||..||+.+-.+.|..+.+|-
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEE
Confidence 369999999999999999999874
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.24 E-value=0.78 Score=38.09 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=24.9
Q ss_pred eeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 349 SIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 349 ~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
-.|||..+|+.+..+-|..+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 379999999999999999999999974
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=89.96 E-value=0.36 Score=36.93 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.6
Q ss_pred EEEEEeeCCCCCeEEEEEEcCCCceeeeCC
Q 040581 38 YVAKIHHGVSQVPINLVLDLGGPLTWVDCD 67 (394)
Q Consensus 38 Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~ 67 (394)
|++++.|+. +++.+++||||+..++...
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHH
Confidence 578899998 9999999999999999643
No 35
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=89.38 E-value=0.9 Score=36.92 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=27.2
Q ss_pred CceEEEEeEEEEcCEEEEEecCCceEEeccCceeeechHHHHHH
Q 040581 224 QDYFINVKSIKINGNPLSVTIEGLTKLSTIVPYATMESSIYATF 267 (394)
Q Consensus 224 ~~y~v~l~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~~~~l 267 (394)
.+|.+ .++|+|+++. +++|||++.+.++++..+++
T Consensus 10 g~~~v---~~~InG~~~~------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYA---TGRVNGRNVR------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEE---EEEECCEEEE------EEEECCCCcEEcCHHHHHHc
Confidence 45543 4778888554 89999999999999886654
No 36
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=88.63 E-value=2.6 Score=33.37 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=20.1
Q ss_pred eeEECccceeeeEEEEeCCCCeE
Q 040581 349 SIVLGGFQLEDNVMDFDLGTSML 371 (394)
Q Consensus 349 ~~ilG~~flr~~yvvFD~~~~rI 371 (394)
..+||..||+++-.+-|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 57999999999999999987753
No 37
>PF13650 Asp_protease_2: Aspartyl protease
Probab=88.29 E-value=0.84 Score=34.22 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=24.6
Q ss_pred EEEEcCEEEEEecCCceEEeccCceeeechHHHHHH
Q 040581 232 SIKINGNPLSVTIEGLTKLSTIVPYATMESSIYATF 267 (394)
Q Consensus 232 ~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~~~~l 267 (394)
.++|+|+++. +++|||++.+.++++.++++
T Consensus 2 ~v~vng~~~~------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 2 PVKVNGKPVR------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEECCEEEE------EEEcCCCCcEEECHHHHHHc
Confidence 3678888554 89999999999998887665
No 38
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=87.48 E-value=1.1 Score=34.15 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=26.0
Q ss_pred EEEEcCEEEEEecCCceEEeccCceeeechHHHHHH
Q 040581 232 SIKINGNPLSVTIEGLTKLSTIVPYATMESSIYATF 267 (394)
Q Consensus 232 ~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~~~~l 267 (394)
.+.|+|+++. +.+|||++.+.++++.+.++
T Consensus 4 ~~~Ing~~i~------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE------EEEcCCcceEEeCHHHHHHh
Confidence 4788999775 79999999999999988765
No 39
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=86.60 E-value=2.9 Score=35.58 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=22.2
Q ss_pred EEEEcCEEEEEecCCceEEeccCceeeechHHHHHH
Q 040581 232 SIKINGNPLSVTIEGLTKLSTIVPYATMESSIYATF 267 (394)
Q Consensus 232 ~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~~~~l 267 (394)
.+.+.+..+. ++||||+...+..++..+.|
T Consensus 38 ~l~~~~t~i~------vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 38 QLNCKGTPIK------VLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEeecCcEEE------EEEeCCCccceeehhhHHhh
Confidence 3444555443 89999999999998877665
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=86.51 E-value=3.8 Score=30.90 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEeeCCCCCeEEEEEEcCCCceeeeCCC
Q 040581 41 KIHHGVSQVPINLVLDLGGPLTWVDCDS 68 (394)
Q Consensus 41 ~i~iGtP~q~~~v~~DTGS~~~wv~~~~ 68 (394)
.+.|.. ++++.++|||++.+-+....
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHHH
Confidence 355655 89999999999999996443
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.76 E-value=1.3 Score=32.24 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCC
Q 040581 34 STLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCD 67 (394)
Q Consensus 34 ~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~ 67 (394)
..+.+++++.||. +.+.+++|||++...++..
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISES 36 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHH
Confidence 4578999999999 9999999999999888644
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.43 E-value=2 Score=31.26 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=25.0
Q ss_pred EEEEcCEEEEEecCCceEEeccCceeeechHHHHHH
Q 040581 232 SIKINGNPLSVTIEGLTKLSTIVPYATMESSIYATF 267 (394)
Q Consensus 232 ~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~~~~l 267 (394)
.+.|++..+. +++|||++-.+++.+.++.+
T Consensus 12 ~~~I~g~~~~------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE------EEEeCCCcceecCHHHHHHh
Confidence 4678887654 89999999999999987776
No 43
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=83.74 E-value=2.4 Score=32.08 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=24.9
Q ss_pred eEEEEcCEEEEEecCCceEEeccCceeeechHHHHHH
Q 040581 231 KSIKINGNPLSVTIEGLTKLSTIVPYATMESSIYATF 267 (394)
Q Consensus 231 ~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~~~~l 267 (394)
..+.|+++.+. +++|||++.+.++.+..+.+
T Consensus 5 v~v~i~~~~~~------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 5 VPVTINGQPVR------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCEEEE------EEEECCCCcEEcCHHHHHHc
Confidence 35778877655 89999999999999876654
No 44
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=83.43 E-value=2 Score=32.47 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=24.7
Q ss_pred EEEcCEEEEEecCCceEEeccCceeeechHHHHHH
Q 040581 233 IKINGNPLSVTIEGLTKLSTIVPYATMESSIYATF 267 (394)
Q Consensus 233 i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~~~~l 267 (394)
+.|||+.+. +++|||.+.+.+++...+.+
T Consensus 3 v~InG~~~~------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE------EEEECCCCeEEECHHHhhhc
Confidence 678888765 89999999999999887664
No 45
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=82.34 E-value=7.8 Score=34.28 Aligned_cols=80 Identities=10% Similarity=0.160 Sum_probs=54.5
Q ss_pred EEEeeeecCCCccEEEEEeeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 040581 25 VAIPVVKDVSTLQYVAKIHHGVSQVPINLVLDLGGPLTWVDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTT 104 (394)
Q Consensus 25 ~~~pl~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~ 104 (394)
.++-|.++ .+|-|.++..|-. |++..++|||-+.+-++... .++.+-. -.
T Consensus 94 ~~v~Lak~-~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~d-------------------A~RlGid--------~~ 143 (215)
T COG3577 94 QEVSLAKS-RDGHFEANGRVNG--KKVDFLVDTGATSVALNEED-------------------ARRLGID--------LN 143 (215)
T ss_pred eEEEEEec-CCCcEEEEEEECC--EEEEEEEecCcceeecCHHH-------------------HHHhCCC--------cc
Confidence 56777774 6789999999987 99999999999999886443 1111100 00
Q ss_pred CCCceeeEEeCCCCceEeeEEEEEEEEeccc
Q 040581 105 TNTCGVFTQNGISGLVTTGDLAEDTIAVRSE 135 (394)
Q Consensus 105 ~~~~~~~~~Y~~~g~~~~G~~~~D~v~i~~~ 135 (394)
..+-++.+.-. +|....-.+--|.+.|++.
T Consensus 144 ~l~y~~~v~TA-NG~~~AA~V~Ld~v~IG~I 173 (215)
T COG3577 144 SLDYTITVSTA-NGRARAAPVTLDRVQIGGI 173 (215)
T ss_pred ccCCceEEEcc-CCccccceEEeeeEEEccE
Confidence 11223444444 5666666788899999987
No 46
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=78.47 E-value=3 Score=32.13 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=23.8
Q ss_pred EEEEEeeCCCCCeEEEEEEcCCCceeeeCCC
Q 040581 38 YVAKIHHGVSQVPINLVLDLGGPLTWVDCDS 68 (394)
Q Consensus 38 Y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~ 68 (394)
=+++|.|.. +++.+++||||+..-++...
T Consensus 6 p~i~v~i~g--~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 6 PYITVKING--KKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp SEEEEEETT--EEEEEEEETTBSSEEESSGG
T ss_pred ceEEEeECC--EEEEEEEecCCCcceecccc
Confidence 356788888 89999999999998886443
No 47
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=74.99 E-value=4.3 Score=31.26 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=22.5
Q ss_pred eEEEEcCEEEEEecCCceEEeccCceeeechHH
Q 040581 231 KSIKINGNPLSVTIEGLTKLSTIVPYATMESSI 263 (394)
Q Consensus 231 ~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~ 263 (394)
..|.++|+.+. ++||||+..+.++++.
T Consensus 8 i~v~i~g~~i~------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 8 ITVKINGKKIK------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEETTEEEE------EEEETTBSSEEESSGG
T ss_pred EEEeECCEEEE------EEEecCCCcceecccc
Confidence 35788888765 8999999999999764
No 48
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=70.46 E-value=5.8 Score=30.48 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=23.4
Q ss_pred EEEEcCEEEEEecCCceEEeccCceeeechHHHHHH
Q 040581 232 SIKINGNPLSVTIEGLTKLSTIVPYATMESSIYATF 267 (394)
Q Consensus 232 ~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~~~~l 267 (394)
.+.++++ ..+ .+.+|||++...+|...|+.+
T Consensus 2 ~~~i~g~-~~v----~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 2 DMKINGK-QSV----KFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred ceEeCCc-eeE----EEEEecCCEEEeccHHHHhhh
Confidence 3667773 222 288999999999999887766
No 49
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=65.96 E-value=71 Score=28.37 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=20.4
Q ss_pred eeEECccceeeeEEEEeCCCCeEEEEe
Q 040581 349 SIVLGGFQLEDNVMDFDLGTSMLGFST 375 (394)
Q Consensus 349 ~~ilG~~flr~~yvvFD~~~~rIGfa~ 375 (394)
..|||.+|+|.|+--.+.+ .+|-|..
T Consensus 92 d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 92 DIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 4799999999888776665 4787763
No 50
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=62.54 E-value=12 Score=30.47 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=24.0
Q ss_pred EEEEcCEEEEEecCCceEEeccCceeeechHHHHHH
Q 040581 232 SIKINGNPLSVTIEGLTKLSTIVPYATMESSIYATF 267 (394)
Q Consensus 232 ~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~~~~l 267 (394)
.+++||+.+. |++|||+-.+.++.+.++++
T Consensus 28 ~~~ing~~vk------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE------EEEeCCCCccccCHHHHHHc
Confidence 5788999775 99999999999999987764
No 51
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=62.25 E-value=15 Score=32.63 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=28.3
Q ss_pred CceEEEEeEEEEcCEEEEEecCCceEEeccCceeeechHHHHHH
Q 040581 224 QDYFINVKSIKINGNPLSVTIEGLTKLSTIVPYATMESSIYATF 267 (394)
Q Consensus 224 ~~y~v~l~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~~~~~l 267 (394)
++|.+ ...|||+.+. .++|||.|.+.++++..+.+
T Consensus 104 GHF~a---~~~VNGk~v~------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 104 GHFEA---NGRVNGKKVD------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CcEEE---EEEECCEEEE------EEEecCcceeecCHHHHHHh
Confidence 66664 4789999876 89999999999999876554
No 52
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=62.16 E-value=9.8 Score=28.91 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=21.2
Q ss_pred EEeeCCCCCeEEEEEEcCCCceeeeCCC
Q 040581 41 KIHHGVSQVPINLVLDLGGPLTWVDCDS 68 (394)
Q Consensus 41 ~i~iGtP~q~~~v~~DTGS~~~wv~~~~ 68 (394)
.+.|+. |.+.+++|||+.++-+....
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~~ 27 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAEND 27 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEcccc
Confidence 466775 99999999999999986443
No 53
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=49.56 E-value=14 Score=29.94 Aligned_cols=20 Identities=10% Similarity=0.198 Sum_probs=18.1
Q ss_pred eEEeccCc-eeeechHHHHHH
Q 040581 248 TKLSTIVP-YATMESSIYATF 267 (394)
Q Consensus 248 ~iiDTGTt-~~~lp~~~~~~l 267 (394)
.++|||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999999 999999998877
No 54
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=48.85 E-value=23 Score=30.29 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=21.4
Q ss_pred EEEEeeCCCCCeEEEEEEcCCCceeeeC
Q 040581 39 VAKIHHGVSQVPINLVLDLGGPLTWVDC 66 (394)
Q Consensus 39 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~ 66 (394)
..++.++....++.++|||||..-.+..
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 4445555556999999999999988753
No 55
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=48.16 E-value=35 Score=31.63 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=29.7
Q ss_pred eEEEeeeecCCCccEEEE---EeeCC---CCCeEEEEEEcCCCceeeeCCC
Q 040581 24 SVAIPVVKDVSTLQYVAK---IHHGV---SQVPINLVLDLGGPLTWVDCDS 68 (394)
Q Consensus 24 ~~~~pl~~~~~~~~Y~~~---i~iGt---P~q~~~v~~DTGS~~~wv~~~~ 68 (394)
..-+|+........|.++ |+||. +.....+++|||++.+.+|...
T Consensus 145 i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~ 195 (273)
T cd05475 145 VTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQA 195 (273)
T ss_pred eeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCcc
Confidence 344566543223567665 68875 2345679999999999998553
No 56
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=44.73 E-value=1.1e+02 Score=23.93 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=39.4
Q ss_pred EEEeeCCCCC----eEEEEEEcCCCcee-eeCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCceeeEEe
Q 040581 40 AKIHHGVSQV----PINLVLDLGGPLTW-VDCDSSADVSSSSSRRLIPSQSIQCSRSGKSPVPGNGSDTTTNTCGVFTQN 114 (394)
Q Consensus 40 ~~i~iGtP~q----~~~v~~DTGS~~~w-v~~~~c~~p~~Sst~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~Y 114 (394)
+++.|..|.| ++.+++|||.+..- ++... -+..+- .+. ....+.-
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~-------------------a~~lgl--~~~---------~~~~~~t 51 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDI-------------------VNKLGL--PEL---------DQRRVYL 51 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHH-------------------HHHcCC--Ccc---------cCcEEEe
Confidence 5788888733 67899999998664 54322 111110 000 0123344
Q ss_pred CCCCceEeeEEEEEEEEeccc
Q 040581 115 GISGLVTTGDLAEDTIAVRSE 135 (394)
Q Consensus 115 ~~~g~~~~G~~~~D~v~i~~~ 135 (394)
+ +|....-....+++.+++.
T Consensus 52 A-~G~~~~~~v~~~~v~igg~ 71 (107)
T TIGR03698 52 A-DGREVLTDVAKASIIINGL 71 (107)
T ss_pred c-CCcEEEEEEEEEEEEECCE
Confidence 3 6767777788999999886
No 57
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=42.53 E-value=39 Score=27.57 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=21.5
Q ss_pred CCccEEEEEeeCCCCCeEEEEEEcCCCceeee
Q 040581 34 STLQYVAKIHHGVSQVPINLVLDLGGPLTWVD 65 (394)
Q Consensus 34 ~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~ 65 (394)
.....|++++|.. ++..+.+|||...+-+.
T Consensus 21 ~v~mLyI~~~ing--~~vkA~VDtGAQ~tims 50 (124)
T PF09668_consen 21 QVSMLYINCKING--VPVKAFVDTGAQSTIMS 50 (124)
T ss_dssp -----EEEEEETT--EEEEEEEETT-SS-EEE
T ss_pred CcceEEEEEEECC--EEEEEEEeCCCCccccC
Confidence 3457899999999 99999999999988875
No 58
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=41.82 E-value=22 Score=27.50 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=18.5
Q ss_pred EEEcCEEEEEecCCceEEeccCceeeechH
Q 040581 233 IKINGNPLSVTIEGLTKLSTIVPYATMESS 262 (394)
Q Consensus 233 i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~ 262 (394)
|.||.-.-.+. ++||||++.+.++.+
T Consensus 3 i~vGtP~q~~~----~~~DTGSs~~Wv~~~ 28 (109)
T cd05470 3 IGIGTPPQTFN----VLLDTGSSNLWVPSV 28 (109)
T ss_pred EEeCCCCceEE----EEEeCCCCCEEEeCC
Confidence 56665322222 899999999999865
No 59
>PLN03146 aspartyl protease family protein; Provisional
Probab=35.30 E-value=51 Score=33.00 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=28.8
Q ss_pred eEEEeeeecCCCccEEEE---EeeCC-----CCCe------EEEEEEcCCCceeeeCC
Q 040581 24 SVAIPVVKDVSTLQYVAK---IHHGV-----SQVP------INLVLDLGGPLTWVDCD 67 (394)
Q Consensus 24 ~~~~pl~~~~~~~~Y~~~---i~iGt-----P~q~------~~v~~DTGS~~~wv~~~ 67 (394)
....|+........|+++ |+||. |+.. -.++||||+..++++..
T Consensus 267 ~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 267 VVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSD 324 (431)
T ss_pred ceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHH
Confidence 345677643234567765 68886 2221 26899999999999744
No 60
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=34.47 E-value=59 Score=29.75 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=31.0
Q ss_pred CeEEEeeeecCCCccEEEE---EeeCC-----CCCeEEEEEEcCCCceeeeCCC
Q 040581 23 NSVAIPVVKDVSTLQYVAK---IHHGV-----SQVPINLVLDLGGPLTWVDCDS 68 (394)
Q Consensus 23 ~~~~~pl~~~~~~~~Y~~~---i~iGt-----P~q~~~v~~DTGS~~~wv~~~~ 68 (394)
+...+|+... ....|.+. |.||. ......+++|||++.+++|..-
T Consensus 168 ~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~ 220 (283)
T cd05471 168 DLTYTPVVSN-GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSV 220 (283)
T ss_pred ceEEEecCCC-CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHH
Confidence 3455666552 24566655 57776 2467899999999999998553
No 61
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=33.45 E-value=56 Score=24.79 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.7
Q ss_pred EEEcCEEEEEecCCceEEeccCceeeechH
Q 040581 233 IKINGNPLSVTIEGLTKLSTIVPYATMESS 262 (394)
Q Consensus 233 i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~ 262 (394)
++++|+.+. +++|||+-.+.+++.
T Consensus 3 ~~i~g~~~~------~llDTGAd~Tvi~~~ 26 (87)
T cd05482 3 LYINGKLFE------GLLDTGADVSIIAEN 26 (87)
T ss_pred EEECCEEEE------EEEccCCCCeEEccc
Confidence 567777765 899999999998863
No 62
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=31.88 E-value=46 Score=31.20 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=29.0
Q ss_pred CeEEEeeeecC-CCccEEEE---EeeCCCC--------CeEEEEEEcCCCceeeeCC
Q 040581 23 NSVAIPVVKDV-STLQYVAK---IHHGVSQ--------VPINLVLDLGGPLTWVDCD 67 (394)
Q Consensus 23 ~~~~~pl~~~~-~~~~Y~~~---i~iGtP~--------q~~~v~~DTGS~~~wv~~~ 67 (394)
+...+|+.... ....|.++ |+||... ....+++|||++++++|..
T Consensus 132 ~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 132 GASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred CceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 34556665532 12467665 6888622 2346899999999999744
No 63
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=29.77 E-value=85 Score=21.71 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=16.8
Q ss_pred eEEeccCceeeechHHHHHH
Q 040581 248 TKLSTIVPYATMESSIYATF 267 (394)
Q Consensus 248 ~iiDTGTt~~~lp~~~~~~l 267 (394)
+++|||++...+..+.++..
T Consensus 12 ~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 12 ALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEcCCCcccccCHHHHHHc
Confidence 89999999999998876543
No 64
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=26.47 E-value=75 Score=30.25 Aligned_cols=30 Identities=20% Similarity=0.092 Sum_probs=21.8
Q ss_pred EEeEEEEcCEEEEEecCCceEEeccCceeeechH
Q 040581 229 NVKSIKINGNPLSVTIEGLTKLSTIVPYATMESS 262 (394)
Q Consensus 229 ~l~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~ 262 (394)
.+..|+||.-.-... ++||||++.+.+|..
T Consensus 4 Y~~~i~vGtP~Q~~~----v~~DTGS~~~wv~~~ 33 (326)
T cd06096 4 YFIDIFIGNPPQKQS----LILDTGSSSLSFPCS 33 (326)
T ss_pred EEEEEEecCCCeEEE----EEEeCCCCceEEecC
Confidence 345688886433333 899999999999864
No 65
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=24.82 E-value=60 Score=30.04 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=20.8
Q ss_pred eEEEEcCEEEEEecCCceEEeccCceeeechH
Q 040581 231 KSIKINGNPLSVTIEGLTKLSTIVPYATMESS 262 (394)
Q Consensus 231 ~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~ 262 (394)
..|+||.-.-.+. +++|||++.+.+|.+
T Consensus 3 ~~i~vGtP~Q~~~----v~~DTGS~~~wv~~~ 30 (278)
T cd06097 3 TPVKIGTPPQTLN----LDLDTGSSDLWVFSS 30 (278)
T ss_pred eeEEECCCCcEEE----EEEeCCCCceeEeeC
Confidence 4578887333333 899999999999965
No 66
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=22.49 E-value=5.2e+02 Score=22.97 Aligned_cols=50 Identities=24% Similarity=0.206 Sum_probs=41.0
Q ss_pred CceEEEEeEEEEcCEEEEEecCCceEEec-cCceeeechHHHHHHHHHHHHHHH
Q 040581 224 QDYFINVKSIKINGNPLSVTIEGLTKLST-IVPYATMESSIYATFAKAFTKAAA 276 (394)
Q Consensus 224 ~~y~v~l~~i~v~~~~~~~~~~~~~iiDT-GTt~~~lp~~~~~~l~~~i~~~~~ 276 (394)
.+-.+.+++|.++++-+++. -.+.|+ |---+|+|.+......+.+.+.+.
T Consensus 101 ~Rl~i~I~SI~~~~~IipV~---L~vYD~DG~eGlyVP~s~~~~a~ke~~~~~~ 151 (200)
T PF12508_consen 101 QRLLITITSIEYGGNIIPVE---LSVYDLDGQEGLYVPNSAEREAAKEMAANAG 151 (200)
T ss_pred cEEEEEEEEEEECCEEEEEE---EEEECCCCCcccccCCchHHHHHHHHHHHHh
Confidence 67899999999999988765 367776 888899999988888877766654
No 67
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=22.30 E-value=1e+02 Score=29.37 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=26.9
Q ss_pred eEEEeeeecCCCccEEEE---EeeCCC---CCeEEEEEEcCCCceeeeCC
Q 040581 24 SVAIPVVKDVSTLQYVAK---IHHGVS---QVPINLVLDLGGPLTWVDCD 67 (394)
Q Consensus 24 ~~~~pl~~~~~~~~Y~~~---i~iGtP---~q~~~v~~DTGS~~~wv~~~ 67 (394)
...+|+.. .+.|.++ +.||.- .++..++||||++.+++|..
T Consensus 181 l~~~p~~~---~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~~ 227 (329)
T cd05485 181 FTYLPVTR---KGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPVD 227 (329)
T ss_pred eEEEEcCC---ceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCHH
Confidence 34555543 3456665 567762 23457999999999999754
No 68
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=21.93 E-value=1.2e+02 Score=24.95 Aligned_cols=28 Identities=11% Similarity=0.293 Sum_probs=23.8
Q ss_pred ccEEEEEeeCCCCCeEEEEEEcCCCceeee
Q 040581 36 LQYVAKIHHGVSQVPINLVLDLGGPLTWVD 65 (394)
Q Consensus 36 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~wv~ 65 (394)
..-.+.+.|.+ ++..+++|+|++.-.+.
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs 47 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFIS 47 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEcc
Confidence 45667888888 99999999999988875
No 69
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=21.35 E-value=94 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.051 Sum_probs=21.7
Q ss_pred EeEEEEcCEEEEEecCCceEEeccCceeeechH
Q 040581 230 VKSIKINGNPLSVTIEGLTKLSTIVPYATMESS 262 (394)
Q Consensus 230 l~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp~~ 262 (394)
+..|.||...-.+. ++||||++.+.+|..
T Consensus 5 ~~~i~iGtP~q~~~----v~~DTGS~~~wv~~~ 33 (318)
T cd05477 5 YGEISIGTPPQNFL----VLFDTGSSNLWVPSV 33 (318)
T ss_pred EEEEEECCCCcEEE----EEEeCCCccEEEccC
Confidence 35688886444443 899999999999853
No 70
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.81 E-value=1.5e+02 Score=29.16 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=29.1
Q ss_pred eEEEeeeecCCCccEEEE---EeeCC----CCCe-----EEEEEEcCCCceeeeCC
Q 040581 24 SVAIPVVKDVSTLQYVAK---IHHGV----SQVP-----INLVLDLGGPLTWVDCD 67 (394)
Q Consensus 24 ~~~~pl~~~~~~~~Y~~~---i~iGt----P~q~-----~~v~~DTGS~~~wv~~~ 67 (394)
..-+||..... ..|.++ |.||. ++.. ..+++|||++++++|..
T Consensus 231 l~~tPl~~~~~-~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~~ 285 (398)
T KOG1339|consen 231 LTYTPLLSNPS-TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPTS 285 (398)
T ss_pred eEEEeeccCCC-ccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccHH
Confidence 45678887432 467654 66886 3222 55799999999999754
No 71
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=20.30 E-value=95 Score=28.82 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=20.6
Q ss_pred EeEEEEcCEEEEEecCCceEEeccCceeeec
Q 040581 230 VKSIKINGNPLSVTIEGLTKLSTIVPYATME 260 (394)
Q Consensus 230 l~~i~v~~~~~~~~~~~~~iiDTGTt~~~lp 260 (394)
+..|.||...-... +++|||++.+.+|
T Consensus 4 ~~~i~iGtp~q~~~----v~~DTgS~~~wv~ 30 (295)
T cd05474 4 SAELSVGTPPQKVT----VLLDTGSSDLWVP 30 (295)
T ss_pred EEEEEECCCCcEEE----EEEeCCCCcceee
Confidence 35678887444433 8999999999999
Done!