BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040584
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/348 (59%), Positives = 247/348 (70%), Gaps = 12/348 (3%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE------IAVAKVKELAGYQG 54
MA+ +LV GG GYIGSHTVL+LL GY VV+DN NA ++ +V+EL G
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG--- 57
Query: 55 NNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLE 114
++ F ++D+ D+ AL+ +F F AVIHFAGLKAVGESVQKPL Y+ NLTGTI LLE
Sbjct: 58 RSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLE 117
Query: 115 VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSE 173
+M AHG KNLVFSSSAT YG P+ +P E P NPYG+SK FIEE+ RD+ ++D
Sbjct: 118 IMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKT 177
Query: 174 WKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
W ++LLRYFNP GAH SG GEDP+GIPNNLMP+V+QVA+GRR AL VFG DY T+DGT
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
VRDYIHVVDLA GHIAALRKL + + GC +YNLGTG G SVL+MV A EKASGKKIP
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Query: 293 SGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
RR GD YA+ A+ EL W A G+D MC D W W +NP G+
Sbjct: 297 VARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGF 344
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/348 (58%), Positives = 247/348 (70%), Gaps = 12/348 (3%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE------IAVAKVKELAGYQG 54
MA+ +LV GG GYIGSHTVL+LL GY VV+DN NA ++ +V+EL G
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG--- 57
Query: 55 NNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLE 114
++ F ++D+ D+ AL+ +F F AVIHFAGLKA+GESVQKPL Y+ NLTGTI LLE
Sbjct: 58 RSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLE 117
Query: 115 VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSE 173
+M AHG KNLVFSSSAT YG P+ +P E P NPYG+SK FIEE+ RD+ ++D
Sbjct: 118 IMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKT 177
Query: 174 WKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
W ++LLRYFNP GAH SG GEDP+GIPNNLMP+V+QVA+GRR AL VFG DY T+DGT
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
VRDYIHVVDLA GHIAALRKL + + GC +YNLGTG G SVL+MV A EKASGKKIP
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Query: 293 SGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
RR GD YA+ A+ EL W A G+D MC D W W +NP G+
Sbjct: 297 VARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGF 344
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/348 (59%), Positives = 246/348 (70%), Gaps = 12/348 (3%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE------IAVAKVKELAGYQG 54
MA+ +LV GG GYIGSHTVL+LL GY VV+DN NA ++ +V+EL G
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG--- 57
Query: 55 NNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLE 114
++ F ++D+ D+ AL+ +F F AVIHFAGLKAVGESVQKPL Y+ NLTGTI LLE
Sbjct: 58 RSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLE 117
Query: 115 VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSE 173
+M AHG KNLVFSSSAT YG P+ +P E P NPYG+SK FIEE+ RD+ ++D
Sbjct: 118 IMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKT 177
Query: 174 WKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
W +LLRYFNP GAH SG GEDP+GIPNNLMP+V+QVA+GRR AL VFG DY T+DGT
Sbjct: 178 WNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
VRDYIHVVDLA GHIAALRKL + + GC +YNLGTG G SVL+MV A EKASGKKIP
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Query: 293 SGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
RR GD YA+ A+ EL W A G+D MC D W W +NP G+
Sbjct: 297 VARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGF 344
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 359 bits (922), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 178/349 (51%), Positives = 242/349 (69%), Gaps = 12/349 (3%)
Query: 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHK 61
+K +LV GG GYIGSHTV++L+ GY VV DNL N++ +VA+++ L + + F++
Sbjct: 11 SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHH---IPFYE 67
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
+DL D+ LE VF K D+VIHFAGLKAVGES Q PL Y+ NN+ GT+ LLE+M +
Sbjct: 68 VDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNV 127
Query: 122 KNLVFSSSATAYG----WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSE-WKI 176
VFSSSAT YG +P ++P EE PL NPYG +K IE I D++ SD + WK
Sbjct: 128 SKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKF 187
Query: 177 ILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235
+LRYFNP+GAHPSG GEDP GIPNNL+P++ QVAVGRR L +FG DY ++DGT +RD
Sbjct: 188 AILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 247
Query: 236 YIHVVDLADGHIAALRKLD---DPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
YIHVVDLA GHIAAL+ L+ + + C +NLG+GKG++V E+ AF KASG +P
Sbjct: 248 YIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKV 307
Query: 293 SGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 341
+GRR GD + A ++A+REL W+ + +++ C+D W W ++NP+GY+
Sbjct: 308 TGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFGYQ 356
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 359 bits (922), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/338 (52%), Positives = 231/338 (68%), Gaps = 6/338 (1%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV GG GYIGSHT +QLL G+ +++DNL N+ + ++ L G + TF + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG---KHPTFVEGDI 59
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
R++A + + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 125 VFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+FSSSAT YG +P E FP +PYG+SKL +E+I D+ ++ +W I LLRYFN
Sbjct: 120 IFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
PVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+DL
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL 239
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
ADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + + RR GD
Sbjct: 240 ADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 177/338 (52%), Positives = 231/338 (68%), Gaps = 6/338 (1%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV GG GYIGSHT +QLL G+ +++DNL N+ + ++ L G + TF + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG---KHPTFVEGDI 59
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
R++A + + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 125 VFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+FSSSAT YG +P E FP +PYG+SKL +E+I D+ ++ +W I LLRYFN
Sbjct: 120 IFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
PVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+DL
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL 239
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
ADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + + RR GD
Sbjct: 240 ADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 299 CWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 358 bits (920), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 177/338 (52%), Positives = 231/338 (68%), Gaps = 6/338 (1%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV GG GYIGSHT +QLL G+ +++DNL N+ + ++ L G + TF + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG---KHPTFVEGDI 59
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
R++A + + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 125 VFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+FSSSAT YG +P E FP +PYG+SKL +E+I D+ ++ +W I LLRYFN
Sbjct: 120 IFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
PVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+DL
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL 239
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
ADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + + RR GD
Sbjct: 240 ADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 358 bits (918), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 176/338 (52%), Positives = 231/338 (68%), Gaps = 6/338 (1%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV GG GYIGSHT +QLL G+ +++DNL N+ + ++ L G + TF + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG---KHPTFVEGDI 59
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
R++A + + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 125 VFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+FSS+AT YG +P E FP +PYG+SKL +E+I D+ ++ +W I LLRYFN
Sbjct: 120 IFSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
PVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+DL
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL 239
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
ADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + + RR GD
Sbjct: 240 ADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 358 bits (918), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 176/338 (52%), Positives = 231/338 (68%), Gaps = 6/338 (1%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV GG GYIGSHT +QLL G+ +++DNL N+ + ++ L G + TF + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG---KHPTFVEGDI 59
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
R++A + + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 125 VFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+FSSSAT YG +P E FP +P+G+SKL +E+I D+ ++ +W I LLRYFN
Sbjct: 120 IFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
PVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+DL
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL 239
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
ADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + + RR GD
Sbjct: 240 ADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 358 bits (918), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 176/338 (52%), Positives = 231/338 (68%), Gaps = 6/338 (1%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV GG GYIGSHT +QLL G+ +++DNL N+ + ++ L G + TF + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG---KHPTFVEGDI 59
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
R++A + + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 125 VFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+FSS+AT YG +P E FP +PYG+SKL +E+I D+ ++ +W I LLRYFN
Sbjct: 120 IFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
PVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+DL
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL 239
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
ADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + + RR GD
Sbjct: 240 ADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 357 bits (917), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 176/338 (52%), Positives = 231/338 (68%), Gaps = 6/338 (1%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV GG GYIGSHT +QLL G+ +++DNL N+ + ++ L G + TF + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG---KHPTFVEGDI 59
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
R++A + + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 125 VFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+FSS+AT YG +P E FP +PYG+SKL +E+I D+ ++ +W I LLRYFN
Sbjct: 120 IFSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
PVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+DL
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL 239
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
ADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + + RR GD
Sbjct: 240 ADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 357 bits (915), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 175/338 (51%), Positives = 231/338 (68%), Gaps = 6/338 (1%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV GG GYIGSHT +QLL G+ +++DNL N+ + ++ L G + TF + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG---KHPTFVEGDI 59
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
R++A + + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 125 VFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+FSS+AT YG +P E FP +P+G+SKL +E+I D+ ++ +W I LLRYFN
Sbjct: 120 IFSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
PVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+DL
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL 239
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
ADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + + RR GD
Sbjct: 240 ADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 356 bits (914), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 176/338 (52%), Positives = 230/338 (68%), Gaps = 6/338 (1%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV GG GYIGSHT +QLL G+ +++DNL N+ + ++ L G + TF + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG---KHPTFVEGDI 59
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
R++A + + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 125 VFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+FSS AT YG +P E FP +PYG+SKL +E+I D+ ++ +W I LLRYFN
Sbjct: 120 IFSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
PVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+DL
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL 239
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
ADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + + RR GD
Sbjct: 240 ADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 356 bits (913), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/338 (51%), Positives = 231/338 (68%), Gaps = 6/338 (1%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV GG GYIGSHT +QLL G+ +++DNL N+ + ++ L G + TF + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG---KHPTFVEGDI 59
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
R++A + + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 125 VFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+FSS+AT YG +P E FP +P+G+SKL +E+I D+ ++ +W I LLRYFN
Sbjct: 120 IFSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
PVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+DL
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDL 239
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
ADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + + RR GD
Sbjct: 240 ADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPA 298
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 299 YWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 181/338 (53%), Positives = 221/338 (65%), Gaps = 5/338 (1%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
ILV GG GYIGSHT ++LL GY V+ DNL N+ A+A+++++ G FH+ D
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKI---TGKTPAFHETD 63
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+ D+ AL +F A IHFA LKAVGESV KP+ Y+ NNL ++LL VM K
Sbjct: 64 VSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKR 123
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+VFSSSAT YG P+ P E FPL A NPYG++KL E+I RDV +D W++ LRYFN
Sbjct: 124 IVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADPSWRVATLRYFN 183
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
PVGAH SG GEDP GIPNNLMP+V QVAVG+ L VFG+DY T DGT VRDYIHVVDL
Sbjct: 184 PVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDL 243
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
A GHIAAL L+ V NLGTG+G SVLE+V AFEKASG+ +P RRPGD
Sbjct: 244 ARGHIAALDALERRDASLTV-NLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAE 302
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
YA+ A + WKA+ ++ MC D W W NP G+
Sbjct: 303 CYANPAAAAETIGWKAERDLERMCADHWRWQENNPRGF 340
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 140/340 (41%), Positives = 188/340 (55%), Gaps = 15/340 (4%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+IL+ GG GYIGSH V +L+ G VVVDNL E A+ + F+ D
Sbjct: 3 SILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITE----------GAKFYNGD 52
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
LRDKA L VF +AV+HFA VG S++KPL Y++NN+ G + LLEVM
Sbjct: 53 LRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDK 112
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+FSS+A YG V TEE N YG +KL IE++ + S + + RYFN
Sbjct: 113 FIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLH-WYSQASNLRYKIFRYFN 171
Query: 184 PVGAHPSG-KGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
GA P+G GED R +L+P V QVA+G+R + +FG DY+T DGT +RDYIHV DL
Sbjct: 172 VAGATPNGIIGEDHRP-ETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDL 230
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
H L+ L + + YNLG G G SV E+V A + + +IP + RR GD
Sbjct: 231 VAAHFLGLKDLQNGG-ESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPAR 289
Query: 303 VYASTEKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYE 341
+ AS++KA+ +L W +Y + + WNW K P GYE
Sbjct: 290 LVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPNGYE 329
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 192/382 (50%), Gaps = 46/382 (12%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVV-----------DNLDNASEIAVAKVKELAG-- 51
+LV GG GYIGSH V LL +VV+ D+++ +A K+++ G
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVA-RKLQQSDGPK 63
Query: 52 --YQGNNMTFHKLDLRDKAALEVVFAGT-KFDAVIHFAGLKAVGESVQKPLPYFDNNLTG 108
+ D+R++ L VF DAV+H AVGESV+ PL Y+DNN+ G
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 109 TITLLEVMAAHGCKNLVFSSSATAYGWP---KVVPCTEEFPLQAM----NPYGRSKLFIE 161
+ LL+ M H C ++FSSSA +G P V E + A +PYG SKL E
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAE 183
Query: 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRG----IPNNLMPFVTQVAVGRR- 215
+ RD + K I LRYFN GAH G GE +G IP L ++ +A +R
Sbjct: 184 RMIRDCAEAYG-IKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRL 242
Query: 216 ---------PALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAAL---RKL--DDPKVGCE 261
+ +FGTDY T DGT VRDY+HV DLA HI AL KL +D
Sbjct: 243 TIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFS 302
Query: 262 VYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYG 321
V+NLGT +G SV E++ K +G IP+ + GRR GD + A+++KA L WK KY
Sbjct: 303 VFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYD 362
Query: 322 -IDEMCRDQWNWASKNPYGYES 342
++ + W + +P GY S
Sbjct: 363 TLEAIMETSWKFQRTHPNGYAS 384
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 153/326 (46%), Gaps = 28/326 (8%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+LV GG G+IGSH V LL G + V+DNL V K + F ++D
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK----------GVPFFRVD 51
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
LRDK +E F + V H A +V SV+ P+ F+ NL G + LLE +G +
Sbjct: 52 LRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEK 111
Query: 124 LVFSSSATA-YGW-PKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
LVF+S+ A YG P+ E +P + +PY SK E V+ K + LRY
Sbjct: 112 LVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYL-SVYGQSYGLKWVSLRY 170
Query: 182 FNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
N G +DP G + F +V G +T++ +G VRDY++V D
Sbjct: 171 GNVYGPR-----QDPHGEAGVVAIFAERVLKGL--PVTLYARKTPGDEGC-VRDYVYVGD 222
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAE 301
+A+ H AL L+ +YN+GTG+G + E++ A +A+GK + + RPGD E
Sbjct: 223 VAEAHALALFSLEG------IYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLE 276
Query: 302 IVYASTEKAERELNWKAKYGIDEMCR 327
S K W+ K G E R
Sbjct: 277 RSVLSPLKLMAH-GWRPKVGFQEGIR 301
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 146/321 (45%), Gaps = 39/321 (12%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
I+V GG G+IGSH V +L+ GY+ VVVDNL + V EL H D
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAEL----------HVRD 51
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
L+D + AG K D V HFA V S +P+ +F+ N+ T +LE G +
Sbjct: 52 LKDYSW----GAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRT 107
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+VF+SS+T YG V+P EE P + ++ YG +K E +C R + + +RY N
Sbjct: 108 VVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGV-RCLAVRYAN 166
Query: 184 PVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP-ALTVFGTDYSTKDGTVVRDYIHVVDL 242
VG PR + F+ ++ R P L V G DGT + Y++V D
Sbjct: 167 VVG---------PRLRHGVIYDFIMKLR--RNPNVLEVLG------DGTQRKSYLYVRDA 209
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG-----KKIPLVKSGR-R 296
+ +AA +K ++ N+G VL++ + G + +P GR
Sbjct: 210 VEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGW 269
Query: 297 PGDAEIVYASTEKAERELNWK 317
PGD + + + K + W+
Sbjct: 270 PGDVKYMTLAVTKLMKLTGWR 290
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 159/340 (46%), Gaps = 31/340 (9%)
Query: 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA-VAKVKELAGYQGNNMTFH 60
A NILV GG G+IGS+ V L Y+T + N D + + VK + + N F
Sbjct: 24 AXNILVTGGAGFIGSNFV-HYXLQSYETYKIINFDALTYSGNLNNVKSIQDHP--NYYFV 80
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
K ++++ LE V +++FA V S++ P+P++D N+ GT+TLLE++ +
Sbjct: 81 KGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYP 140
Query: 121 CKNLVFSSSATAYG-WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
LV S+ YG K TEE PL +PY SK + I +++ + +I+
Sbjct: 141 HIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKT-YQLPVIVT 199
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPF-VTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238
R N G P P L+P VT G++ L ++G DG VRD++H
Sbjct: 200 RCSNNYG---------PYQYPEKLIPLXVTNALEGKK--LPLYG------DGLNVRDWLH 242
Query: 239 VVDLADGHIAALR-KLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK-KIPLVKSGRR 296
V D H +A+ L +VG EVYN+G + +E+V GK K + R
Sbjct: 243 VTD----HCSAIDVVLHKGRVG-EVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDR 297
Query: 297 PGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
G + EK + E +W+ KY ++ ++ W KN
Sbjct: 298 LGHDRRYAINAEKXKNEFDWEPKYTFEQGLQETVQWYEKN 337
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 144/321 (44%), Gaps = 43/321 (13%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
I+V GG G+IGSH V +L+ GY+ VVVD + + G + H D
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDT--------------GGSAELHVRD 47
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
L+D + AG K D V HFA V S +P+ +F+ N+ T +LE G +
Sbjct: 48 LKDYSW----GAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRT 103
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+VF+SS+T YG V+P EE P + ++ YG +K E +C R + + +RY N
Sbjct: 104 VVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGV-RCLAVRYAN 162
Query: 184 PVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP-ALTVFGTDYSTKDGTVVRDYIHVVDL 242
VG PR + F+ ++ R P L V G DGT + Y++V D
Sbjct: 163 VVG---------PRLRHGVIYDFIMKLR--RNPNVLEVLG------DGTQRKSYLYVRDA 205
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG-----KKIPLVKSGR-R 296
+ +AA +K ++ N+G VL++ + G + +P GR
Sbjct: 206 VEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGW 265
Query: 297 PGDAEIVYASTEKAERELNWK 317
PGD + + + K + W+
Sbjct: 266 PGDVKYMTLAVTKLMKLTGWR 286
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 149/346 (43%), Gaps = 35/346 (10%)
Query: 4 NILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
N++V+GG G++GS+ V +LL LG + VVDNL +A +I V + F +
Sbjct: 34 NVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAV--------RFSET 85
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-C 121
+ D A L + ++D V H A S+ PL +NN T+ L E +
Sbjct: 86 SITDDALLASL--QDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRL 143
Query: 122 KNLVFSSSATAYGWPKV--VPCTEEFPLQAMN----PYGRSKLFIEEICRDVHRSDSEWK 175
K +V+S++ + TEE + +++ PY SK+F E H+ +
Sbjct: 144 KKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQ-HQLP 202
Query: 176 IILLRYFNPVGAHPSGKGEDPRGIP----NNLMPFVTQVAVGRRPALTVFGTDYSTKDGT 231
+ R+ N G RG P N+ P A+ P G G
Sbjct: 203 TVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENG-------GV 255
Query: 232 VVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV 291
RD+I V D+A+G IA D G VYN+ +GK TS+ ++ + +G L
Sbjct: 256 ATRDFIFVEDVANGLIAC--AADGTPGG--VYNIASGKETSIADLATKINEITGNNTELD 311
Query: 292 KSGRRPGD-AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
+ +RP D + + S EKA REL + A ID+ R W N
Sbjct: 312 RLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKAN 357
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 146/338 (43%), Gaps = 48/338 (14%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
+ IL+ GG G+IG H L+ G + V+D+L +V + +G
Sbjct: 6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDL---------RVPPMIPPEGTGKFLE 56
Query: 61 K----LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
K L+ RD + + +V+ H A K+V S ++PL Y DN +G LL +
Sbjct: 57 KPVLELEERDLSDVRLVY---------HLASHKSVPRSFKQPLDYLDNVDSGR-HLLALC 106
Query: 117 AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI 176
+ G +V S+ YG +P E+ PL +PY SK+ +E + R+ ++
Sbjct: 107 TSVGVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEV 166
Query: 177 ILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
++R+FN G P P+ L+P + + R L V G DG RD+
Sbjct: 167 GIVRFFNVYG---------PGERPDALVPRLCANLLTRN-ELPVEG------DGEQRRDF 210
Query: 237 IHVVDLADGHIA-ALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR 295
++ D+ D +A A R L V N G+G+ SV +++ + A+ + +
Sbjct: 211 TYITDVVDKLVALANRPLPS------VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQP 263
Query: 296 RPGDAEIVYASTEKAERELNWKA-KYGIDEMCRDQWNW 332
RP + A T R++ ++ GI+E R W
Sbjct: 264 RPNEITEFRADTALQTRQIGERSGGIGIEEGIRLTLEW 301
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 144/352 (40%), Gaps = 40/352 (11%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGN--------N 56
+LV GG G+IGSH V QLL G Y V D E+ V AG + N
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPAD------EVIVLDSLTYAGNRANLAPVDADPR 56
Query: 57 MTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
+ F D+RD L G DA++HFA V S+ + + N+ GT TLL+
Sbjct: 57 LRFVHGDIRDAGLLARELRGV--DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCA 114
Query: 117 AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI 176
G +V S+ YG TE PL+ +PY SK + + R HR+ +
Sbjct: 115 VDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYG-LDV 173
Query: 177 ILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235
+ R N G P P L+P FVT + G L ++G DG VR+
Sbjct: 174 RITRCCNNYG---------PYQHPEKLIPLFVTNLLDG--GTLPLYG------DGANVRE 216
Query: 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV-KSG 294
++H D G IA + L + G E+Y++G G + E+ + G V K
Sbjct: 217 WVHTDDHCRG-IALV--LAGGRAG-EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVA 272
Query: 295 RRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNST 346
R G K EREL ++ + + W +N +E +T
Sbjct: 273 DRKGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRGWWEPLKAT 324
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 144/332 (43%), Gaps = 51/332 (15%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
I+V GG G+IGSH V +L + VV+DNL + +E V + L K DL
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFVNEAARLV----------KADL 52
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
AA ++ + V H A V + P + NN+ T LLE M G +
Sbjct: 53 ---AADDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRI 109
Query: 125 VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKL----FIEEICRDVHRSDSE-WKIILL 179
VF+S++T YG KV+P E++P ++ YG SKL IE C H D + W +
Sbjct: 110 VFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYC---HTFDMQAW---IY 163
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP-ALTVFGTDYSTKDGTVVRDYIH 238
R+ N +G R + F+ ++ R P L + G +G + YI+
Sbjct: 164 RFANVIGR---------RSTHGVIYDFIMKLK--RNPEELEILG------NGEQNKSYIY 206
Query: 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEM--VAAFEKASGKKIPLVKSGRR 296
+ D D + LR D +V ++N+G+ V + + E + R
Sbjct: 207 ISDCVDAMLFGLRG--DERVN--IFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRG 262
Query: 297 -PGDAEIVYASTEKAERELNWKAKYGIDEMCR 327
GD ++ S EK +R L WK +Y +E R
Sbjct: 263 WKGDVPVMLLSIEKLKR-LGWKPRYNSEEAVR 293
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 144/352 (40%), Gaps = 40/352 (11%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGN--------N 56
+LV GG G+IGSH V QLL G Y V D E+ V AG + N
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPAD------EVIVLDSLTYAGNRANLAPVDADPR 56
Query: 57 MTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
+ F D+RD L G DA++HFA V S+ + + N+ GT TLL+
Sbjct: 57 LRFVHGDIRDAGLLARELRGV--DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCA 114
Query: 117 AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI 176
G +V S+ YG TE PL+ +PY SK + + R HR+ +
Sbjct: 115 VDAGVGRVVHVSTDEVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYG-LDV 173
Query: 177 ILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235
+ R N G P P L+P FVT + G L ++G DG VR+
Sbjct: 174 RITRCCNNYG---------PYQHPEKLIPLFVTNLLDG--GTLPLYG------DGANVRE 216
Query: 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV-KSG 294
++H D G IA + L + G E+Y++G G + E+ + G V K
Sbjct: 217 WVHTDDHCRG-IALV--LAGGRAG-EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVA 272
Query: 295 RRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNST 346
R G K EREL ++ + + W +N +E +T
Sbjct: 273 DRKGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRGWWEPLKAT 324
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 143/337 (42%), Gaps = 25/337 (7%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGY-QGNNMTFHK 61
K L+ G G+IGS+ + +LL + +DN + + +VK L Q + F +
Sbjct: 26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIE 85
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D+RD E V G D V+H A L +V S+ P+ N+TG + +L
Sbjct: 86 GDIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
++ +++S++ YG +P EE ++PY +K ++ EI V+ +K I LRY
Sbjct: 144 QSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYGFKTIGLRY 202
Query: 182 FNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD-YSTKDGTVVRDYIHVV 240
FN G+ +DP G ++P + A + G D Y DG RD+ ++
Sbjct: 203 FNVF-----GRRQDPNGAYAAVIP--------KWTAAMLKGDDVYINGDGETSRDFCYID 249
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG-----KKIPLVKSGR 295
++ +I + D K +YN+ G T++ E+ K+ +
Sbjct: 250 NVIQMNILSALAKDSAK--DNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 307
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
R GD A KA L ++ I E R W
Sbjct: 308 RSGDVRASQADVTKAIDLLKYRPNIKIREGLRLSMPW 344
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 143/337 (42%), Gaps = 25/337 (7%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGY-QGNNMTFHK 61
K L+ G G+IGS+ + +LL + +DN + + +VK L Q + F +
Sbjct: 39 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIE 98
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D+RD E V G D V+H A L +V S+ P+ N+TG + +L
Sbjct: 99 GDIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 156
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
++ +++S++ YG +P EE ++PY +K ++ EI V+ +K I LRY
Sbjct: 157 QSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYGFKTIGLRY 215
Query: 182 FNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD-YSTKDGTVVRDYIHVV 240
FN G+ +DP G ++P + A + G D Y DG RD+ ++
Sbjct: 216 FNVF-----GRRQDPNGAYAAVIP--------KWTAAMLKGDDVYINGDGETSRDFCYID 262
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG-----KKIPLVKSGR 295
++ +I + D K +YN+ G T++ E+ K+ +
Sbjct: 263 NVIQMNILSALAKDSAK--DNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 320
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
R GD A KA L ++ I E R W
Sbjct: 321 RSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 357
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 143/337 (42%), Gaps = 25/337 (7%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGY-QGNNMTFHK 61
K L+ G G+IGS+ + +LL + +DN + + +VK L Q + F +
Sbjct: 26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIE 85
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D+RD E V G D V+H A L +V S+ P+ N+TG + +L
Sbjct: 86 GDIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
++ +++S++ YG +P EE ++PY +K ++ EI V+ +K I LRY
Sbjct: 144 QSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYGFKTIGLRY 202
Query: 182 FNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD-YSTKDGTVVRDYIHVV 240
FN G+ +DP G ++P + A + G D Y DG RD+ ++
Sbjct: 203 FNVF-----GRRQDPNGAYAAVIP--------KWTAAMLKGDDVYINGDGETSRDFCYID 249
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG-----KKIPLVKSGR 295
++ +I + D K +YN+ G T++ E+ K+ +
Sbjct: 250 NVIQMNILSALAKDSAK--DNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 307
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
R GD A KA L ++ I E R W
Sbjct: 308 RSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 344
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 143/337 (42%), Gaps = 25/337 (7%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGY-QGNNMTFHK 61
K L+ G G+IGS+ + +LL + +DN + + +VK L Q + F +
Sbjct: 20 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIE 79
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D+RD E V G D V+H A L +V S+ P+ N+TG + +L
Sbjct: 80 GDIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 137
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
++ +++S++ YG +P EE ++PY +K ++ EI V+ +K I LRY
Sbjct: 138 QSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYGFKTIGLRY 196
Query: 182 FNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD-YSTKDGTVVRDYIHVV 240
FN G+ +DP G ++P + A + G D Y DG RD+ ++
Sbjct: 197 FNVF-----GRRQDPNGAYAAVIP--------KWTAAMLKGDDVYINGDGETSRDFCYID 243
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG-----KKIPLVKSGR 295
++ +I + D K +YN+ G T++ E+ K+ +
Sbjct: 244 NVIQMNILSALAKDSAK--DNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 301
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
R GD A KA L ++ I E R W
Sbjct: 302 RSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 338
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 142/325 (43%), Gaps = 27/325 (8%)
Query: 6 LVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG-YQGNNMTFHKLDL 64
L+ G G+IGS+ + LL K V +DN + + +V+ L Q +N F + D+
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
R+ AG D V+H A L +V S+ P+ N+ G + +L ++
Sbjct: 91 RNLDDCNNACAGV--DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSF 148
Query: 125 VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNP 184
+++S++ YG +P E+ + ++PY +K ++ E+ DV + I LRYFN
Sbjct: 149 TYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTK-YVNELYADVFSRCYGFSTIGLRYFNV 207
Query: 185 VGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD-YSTKDGTVVRDYIHVVDLA 243
G+ +DP G ++P T + G D Y DG RD+ ++ +
Sbjct: 208 F-----GRRQDPNGAYAAVIPKWTSSMIQ--------GDDVYINGDGETSRDFCYIENTV 254
Query: 244 DGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKA------SGKKIPLVKSGRRP 297
++ A D + +VYN+ G TS+ ++ A S + P+ + R
Sbjct: 255 QANLLAATAGLDAR--NQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFRE- 311
Query: 298 GDAEIVYASTEKAERELNWKAKYGI 322
GD A KA + L + KY +
Sbjct: 312 GDVRHSLADISKAAKLLGYAPKYDV 336
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 134/361 (37%), Gaps = 55/361 (15%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVV-VDNLDNASEI-AVAKVKELAGYQGNNMTFHKL 62
IL+ GG G+IGS V ++ TVV +D L A + +++ + E N F
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISE-----SNRYNFEHA 57
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC- 121
D+ D A + +F + DAV+H A V S+ P + + N+ GT LLEV +
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA 117
Query: 122 ------KNLVFSSSAT--AYG---WPKVVPCTEEFPL-------QAMNPYGRSKLFIEEI 163
N F +T YG P V + PL +PY SK + +
Sbjct: 118 LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHL 177
Query: 164 CRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223
R R+ Y P P P L+P V A+ +P L ++G
Sbjct: 178 VRAWRRT----------YGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKP-LPIYGK 226
Query: 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKA 283
G +RD+++V D H AL + E YN+G L++V
Sbjct: 227 ------GDQIRDWLYVED----HARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDL 276
Query: 284 SGKKIPLVKSGR--------RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASK 335
+ +P S R RPG K REL WK + R W
Sbjct: 277 LDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLA 336
Query: 336 N 336
N
Sbjct: 337 N 337
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 144/329 (43%), Gaps = 42/329 (12%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K IL+ GG G++GSH +L++ G++ VVDN + V+ G++ + H
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK---RNVEHWIGHENFELINH-- 60
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ + +EV D + H A + + P+ N GT+ +L + G +
Sbjct: 61 DVVEPLYIEV-------DQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 113
Query: 123 NLVFSSSATAYGWPKVVPCTEEF-----PLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
L+ +S++ YG P+V P +E++ P+ Y K E +C + + ++
Sbjct: 114 -LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEG-VEVR 171
Query: 178 LLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237
+ R FN G P D R + N F+ Q G LTV+G+ G+ R +
Sbjct: 172 VARIFNTFG--PRMHMNDGRVVSN----FILQALQGE--PLTVYGS------GSQTRAFQ 217
Query: 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEK--ASGKKIPLVKSGR 295
+V DL +G +A L + V V NLG + ++LE + SG +I + +
Sbjct: 218 YVSDLVNGLVA----LMNSNVSSPV-NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ 272
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDE 324
D + +KA+ L W+ ++E
Sbjct: 273 --DDPQKRKPDIKKAKLMLGWEPVVPLEE 299
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 151/346 (43%), Gaps = 41/346 (11%)
Query: 5 ILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+LV GG+G+IGS+ + +L ++ + +D L S A +K+L TF K
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSN--PANLKDLE--DDPRYTFVKG 61
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ D ++ + K D V+H A V S+ P + +N+ GT TLLE + +
Sbjct: 62 DVADYELVKELVR--KVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPE 119
Query: 123 -NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSK----LFIEEICRDVHRSDSEWKII 177
V S+ YG TE L +PY +K + + R + + S
Sbjct: 120 VRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTYNLNAS----- 174
Query: 178 LLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
+ R N G P P L+P + + ++G + + ++GT G VRD+
Sbjct: 175 ITRCTNNYG---------PYQFPEKLIPKTIIRASLGLK--IPIYGT------GKNVRDW 217
Query: 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK-SGR 295
++V D H+ A+ + E+YN+ G+ + LE+V + GK L++
Sbjct: 218 LYVED----HVRAIELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVED 273
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 341
RPG + K R+L W+ KY DE + +W KN + ++
Sbjct: 274 RPGHDLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLKNEWWWK 319
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 42/329 (12%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K IL+ GG G++GSH +L G++ VVDN + V+ G++ + H
Sbjct: 28 KRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRK---RNVEHWIGHENFELINH-- 82
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ + +EV D + H A + P+ N GT+ L + G +
Sbjct: 83 DVVEPLYIEV-------DQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGAR 135
Query: 123 NLVFSSSATAYGWPKVVPCTEEF-----PLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
L+ +S++ YG P+V P +E++ P+ Y K E C + + ++
Sbjct: 136 -LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEG-VEVR 193
Query: 178 LLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237
+ R FN G P D R + N F+ Q G LTV+G+ G+ R +
Sbjct: 194 VARIFNTFG--PRXHXNDGRVVSN----FILQALQGE--PLTVYGS------GSQTRAFQ 239
Query: 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEK--ASGKKIPLVKSGR 295
+V DL +G +A L + V V NLG + ++LE + SG +I + +
Sbjct: 240 YVSDLVNGLVA----LXNSNVSSPV-NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ 294
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDE 324
D + +KA+ L W+ ++E
Sbjct: 295 --DDPQKRKPDIKKAKLXLGWEPVVPLEE 321
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 121/291 (41%), Gaps = 45/291 (15%)
Query: 3 KNILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEI-AVAKVKELAGYQGNNMTFH 60
+ IL+ GG G+IGS V ++ VVVD L A + ++A V Q F
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVA-----QSERFAFE 56
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
K+D+ D+A L VF + D V+H A V S+ P + + N+ GT TLLE AA
Sbjct: 57 KVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLE--AARA 114
Query: 121 CKNLVFSSSATAYGWPKVVP-------------CTEEFPLQAMNPYGRSKLFIEEICRDV 167
N + +A+ + + TE P +PY SK + + R
Sbjct: 115 YWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVR-- 172
Query: 168 HRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227
W L Y P P P L+P + A+ + +L V+G
Sbjct: 173 -----AW---LRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGK-SLPVYG----- 218
Query: 228 KDGTVVRDYIHVVDLADGHIAALRKLDDP-KVGCEVYNLGTGKGTSVLEMV 277
+G +RD+++V D H AL + KVG E YN+G L++V
Sbjct: 219 -NGQQIRDWLYVED----HARALYCVATTGKVG-ETYNIGGHNERKNLDVV 263
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 136/338 (40%), Gaps = 52/338 (15%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
IL+ GG G +GS+ + L G++ +V+DN + V L+ +G+ +
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGS--------V 74
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDN---NLTGTITLLEVMAAHGC 121
D LE F K V+H A + + P + ++ N+ G+I + + + G
Sbjct: 75 TDAGLLERAFDSFKPTHVVHSAA------AYKDPDDWAEDAATNVQGSINVAKAASKAGV 128
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
K L+ +A YG P VP + P YG SK E S+ ++ LR
Sbjct: 129 KRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLM-----MSDVPVVSLRL 183
Query: 182 FNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
N G PR + F ++ G++ F +D VRD++ + D
Sbjct: 184 ANVTG---------PRLAIGPIPTFYKRLKAGQK----CFCSD-------TVRDFLDMSD 223
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTS---VLEMVAAFEKAS-GKKIPLVKSGRRP 297
IA L + G V+N+ TG+G S V ++V + A+ + +P+V G
Sbjct: 224 FL--AIADLSLQEGRPTG--VFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGAD- 278
Query: 298 GDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASK 335
D V K E E WKAK + Q W K
Sbjct: 279 -DVPSVVLDPSKTETEFGWKAKVDFKDTITGQLAWYDK 315
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 112/284 (39%), Gaps = 35/284 (12%)
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
L D AL G AV+H + + + + F N+ GT LL+ +A G +
Sbjct: 65 LEDGQALSDAIMGVS--AVLHLGAFMSWAPADRDRM--FAVNVEGTRRLLDAASAAGVRR 120
Query: 124 LVFSSSATAY--GWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
VF+SS Y P+ +P TE+ PL +PYG +KL EE+ R H+ + ++LR+
Sbjct: 121 FVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELVR-FHQRSGAMETVILRF 179
Query: 182 FNPVGAHPSGKGE---------DPRGIPNNLMPFVTQVAVGRRPALTVF--GTDYSTKDG 230
+H E PR L P + Q A+ D
Sbjct: 180 -----SHTQDATELLDEDSFFSGPRFF---LRPRIHQQQNFGNAAIAELLQSRDIGEPSH 231
Query: 231 TVVRD------YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKAS 284
+ R+ +H+ D D L LD P+ +NLG + ++ +
Sbjct: 232 ILARNENGRPFRMHITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKIAALT 291
Query: 285 GKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRD 328
G I V PGD + S E+ L ++A++ +D M +
Sbjct: 292 GLPIVTVDF---PGDGVYYHTSNERIRNTLGFEAEWTMDRMLEE 332
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 23/275 (8%)
Query: 56 NMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEV 115
N+ LD+ D ++ V + K D + H A +V +S F N+ GT+ +L+
Sbjct: 52 NVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDA 111
Query: 116 MAAHG--CKNLVFSSSATAYGW--PKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD 171
+ C+ L SS YG P+ P +EE L+ M+PYG SK + + R ++
Sbjct: 112 VRDSNLDCRILTIGSSE-EYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAY 170
Query: 172 SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGT 231
II R FN +G G+ + + + + + ++ + G + +D T
Sbjct: 171 G-MDIIHTRTFNHIGP-----GQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFT 224
Query: 232 VVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKI--P 289
VRD + L + K G +VYN+ +G GT + +++ + KI
Sbjct: 225 DVRDIVQAYWLLSQY---------GKTG-DVYNVCSGIGTRIQDVLDLLLAMANVKIDTE 274
Query: 290 LVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDE 324
L RP + + S ++ + WK + +++
Sbjct: 275 LNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLEK 309
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 116/273 (42%), Gaps = 37/273 (13%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTV-VVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
I+V GG G+IGS+ V L G + VVDNL + ++ N + + D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV------------NLVDLNIAD 49
Query: 64 LRDKAALEV-VFAGTKF---DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH 119
DK + + AG +F +A+ H + E K + DNN + LL
Sbjct: 50 YMDKEDFLIQIMAGEEFGDVEAIFHEGAXSSTTEWDGKYM--MDNNYQYSKELLHYCLER 107
Query: 120 GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
L SS+AT G + E+ + +N YG SK +E R + ++ +I+
Sbjct: 108 EIPFLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKFLFDEYVRQI-LPEANSQIVGF 165
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
RYFN G KG + + TQ+ G P L ++ RD+++V
Sbjct: 166 RYFNVYGPREGHKG----SMASVAFHLNTQLNNGESPKLFEGSENFK-------RDFVYV 214
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272
D+AD L L++ G ++NLGTG+ S
Sbjct: 215 GDVAD---VNLWFLENGVSG--IFNLGTGRAES 242
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 117/275 (42%), Gaps = 37/275 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTV-VVDNLDNASEIAVAKVKELAGYQGNNMTFHK 61
+ I+V GG G+IGS+ V L G + VVDNL + ++ N + +
Sbjct: 47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV------------NLVDLNI 94
Query: 62 LDLRDKAALEV-VFAGTKF---DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMA 117
D DK + + AG +F +A+ H + E K + DNN + LL
Sbjct: 95 ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCL 152
Query: 118 AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
L SS+AT G + E+ + +N +G SK +E R + ++ +I+
Sbjct: 153 EREIPFLYASSAATYGGRTSDFIESREYE-KPLNVFGYSKFLFDEYVRQI-LPEANSQIV 210
Query: 178 LLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237
RYFN G KG + + TQ+ G P L ++ RD++
Sbjct: 211 GFRYFNVYGPREGHKGS----MASVAFHLNTQLNNGESPKLFEGSENFK-------RDFV 259
Query: 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272
+V D+AD L L++ G ++NLGTG+ S
Sbjct: 260 YVGDVAD---VNLWFLENGVSG--IFNLGTGRAES 289
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/356 (23%), Positives = 138/356 (38%), Gaps = 41/356 (11%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
MAK +L+ GG G++GS+ L G +V DNL + + A + L+ N F
Sbjct: 1 MAK-LLITGGCGFLGSNLASFALSQGIDLIVFDNL--SRKGATDNLHWLSSL--GNFEFV 55
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
D+R+K + + D+ H AG A+ S+ P F+ N+ GT+ LLE + +
Sbjct: 56 HGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN 115
Query: 121 CK-NLVFSSSATAYG---------WPKVVPCT-------EEFPLQAMNPYGRSKLFIEEI 163
N+++SS+ YG C E L +PYG SK ++
Sbjct: 116 SNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQY 175
Query: 164 CRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223
D R ++ R+ + G + +G ++ G T+ G
Sbjct: 176 MLDYARIFG-LNTVVFRHSSMYGGRQFATYD--QGWVGWFCQKAVEIKNGINKPFTISG- 231
Query: 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV-----LEMVA 278
+G VRD +H D+ + AL + K+ +N+G GT V LE+
Sbjct: 232 -----NGKQVRDVLHAEDMISLYFTALANV--SKIRGNAFNIG---GTIVNSLSLLELFK 281
Query: 279 AFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWAS 334
E + R D + A +K ++W K + + ++W S
Sbjct: 282 LLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTS 337
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 144/354 (40%), Gaps = 60/354 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K L+ G G G++ LL GY+ D + E A ++KEL G + + H +
Sbjct: 4 KRALITGIRGQDGAYLAKLLLEKGYEVYGADR--RSGEFASWRLKEL-GIENDVKIIH-M 59
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
DL + + + + D V + A VG S ++P+ + + G + +LE +
Sbjct: 60 DLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPD 119
Query: 123 NLVF-SSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI--ILL 179
+ +S++ +G + +P TE+ P +PY +KLF I + + + + IL
Sbjct: 120 TKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILF 179
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVV------ 233
+ +P+ RGI FVT R+ ++ Y +D V+
Sbjct: 180 NHESPL-----------RGI-----EFVT-----RKITYSLARIKYGLQDKLVLGNLNAK 218
Query: 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 293
RD+ + + + +++ + + Y + TG+ +V E V K +G I V
Sbjct: 219 RDWGYAPEYVEAMWLMMQQPE-----PDDYVIATGETHTVREFVEKAAKIAGFDIEWVGE 273
Query: 294 G---------------------RRPGDAEIVYASTEKAERELNWKAKYGIDEMC 326
G RP + +I+ + EKA ++L WK + DE+
Sbjct: 274 GINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELV 327
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 130/307 (42%), Gaps = 51/307 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDN------LDNASEIAVAKVKELAGYQG 54
+ IL+ GG G++GS+ K VV+D N ++ K L G++G
Sbjct: 11 QTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKG 70
Query: 55 NNMTF---HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTIT 111
+ + LDLR L FD + H A + Q+ + N +
Sbjct: 71 EVIAADINNPLDLRRLEKLH-------FDYLFHQAAVSDTTMLNQELV--MKTNYQAFLN 121
Query: 112 LLEVMAAHGCKNLVFSSSATAYG---WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVH 168
LLE+ + K ++++SSA YG P VV E N YG SKL ++E H
Sbjct: 122 LLEIARSKKAK-VIYASSAGVYGNTKAPNVVGKNE----SPENVYGFSKLCMDEFVLS-H 175
Query: 169 RSDSEWKIILLRYFNPVGAHPSGKGEDPRGI-PNNLMPFVTQVAVGRRPALTVFGTDYST 227
+D+ + LRYFN G PR V Q+A+G V ++
Sbjct: 176 SNDNVQ--VGLRYFNVYG---------PREFYKEKTASMVLQLALGAMAFKEVKLFEF-- 222
Query: 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK- 286
G +RD++++ D+ ++ A++ K G VYN+G + S E+V+ ++ G
Sbjct: 223 --GEQLRDFVYIEDVIQANVKAMKA---QKSG--VYNVGYSQARSYNEIVSILKEHLGDF 275
Query: 287 KIPLVKS 293
K+ +K+
Sbjct: 276 KVTYIKN 282
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 141/359 (39%), Gaps = 57/359 (15%)
Query: 3 KNILVIGGV-GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKEL----AGYQGNNM 57
+N+ +I G+ G GS+ LL GY+ + + +S +++ L + NM
Sbjct: 24 RNVALITGITGQDGSYLAEFLLEKGYEVHGI--VRRSSSFNTGRIEHLYKNPQAHIEGNM 81
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMA 117
H DL D L + K + + V S D + GT+ LL+ +
Sbjct: 82 KLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVK 141
Query: 118 AHGCKNLV---FSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEW 174
G N V +S++ YG + +P E P +PYG +KL+ I + + + +
Sbjct: 142 TCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLF 201
Query: 175 KI--ILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT--DYSTKDG 230
+ IL + E PR N FVT+ + R A G +S +
Sbjct: 202 AVNGILFNH------------ESPRRGAN----FVTR-KISRSVAKIYLGQLECFSLGNL 244
Query: 231 TVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKI-- 288
RD+ H D + L+ D+P E + + TG+ SV E V GK I
Sbjct: 245 DAKRDWGHAKDYVEAMWLMLQN-DEP----EDFVIATGEVHSVREFVEKSFLHIGKTIVW 299
Query: 289 ---------PLVKSGR----------RPGDAEIVYASTEKAERELNWKAKYGIDEMCRD 328
++G+ RP + + + KA+++LNWK + DE+ R+
Sbjct: 300 EGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVRE 358
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 137/352 (38%), Gaps = 59/352 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
KNI+V GG G+IGS+ V + + V V LD + L G+ +
Sbjct: 5 KNIIVTGGAGFIGSNFV-HYVYNNHPDVHVTVLDKLT--YAGNKANLEAILGDRVELVVG 61
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ D ++ + A K DA++H+A S+ P P+ N GT TLLE + +
Sbjct: 62 DIADAELVDKLAA--KADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR 119
Query: 123 NLVFSSSATAYGWPKVVPCTEEFP---------------LQAMNPYGRSKLFIEEICRDV 167
S+ YG +P E+ P +PY +K + I +
Sbjct: 120 -FHHVSTDEVYG---DLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAW 175
Query: 168 HRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227
RS K + N G + + PR I T + G +P L +G
Sbjct: 176 VRSFGV-KATISNCSNNYGPYQHIEKFIPRQI--------TNILAGIKPKL--YG----- 219
Query: 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG---KGTSVLEMVAAFEKAS 284
+G VRD+IH D + G A L K ++G E Y +G VLE++ EK
Sbjct: 220 -EGKNVRDWIHTNDHSTGVWAILTK---GRMG-ETYLIGADGEKNNKEVLELI--LEKMG 272
Query: 285 GKKIPLVKSGRRPGDAEIVYA-STEKAERELNWKAKY-----GIDEMCRDQW 330
K R G ++ YA K EL W ++ G++E QW
Sbjct: 273 QPKDAYDHVTDRAG-HDLRYAIDASKLRDELGWTPQFTDFSEGLEETI--QW 321
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 126/348 (36%), Gaps = 59/348 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
K + V G G+ GS L L G K +D S + ++ +L M H
Sbjct: 10 KRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDL-------MESH 62
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
D+RD L A K + V H A V S ++P+ + N+ GT+ LLE + G
Sbjct: 63 IGDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVG 122
Query: 121 -CKNLVFSSSATAYG---WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI 176
K +V +S Y W V E P+ +PY SK E + S
Sbjct: 123 NIKAVVNITSDKCYDNREW--VWGYRENEPMGGYDPYSNSKGCAELVASAFRNS------ 174
Query: 177 ILLRYFNPVGAHPSGKG---------------EDPRGIPNNLMPFV-TQVAVGRRPALTV 220
+FNP G G R IP+ L F Q + R P
Sbjct: 175 ----FFNPANYEQHGVGLASVRAGNVIGGGDWAKDRLIPDILRSFENNQQVIIRNP---- 226
Query: 221 FGTDYSTKDGTVVRDYIHVVDLADGHIAALRKL-DDPKVGCEVYNLG--TGKGTSVLEMV 277
YS +R + HV++ G+I ++L + E +N G +V +V
Sbjct: 227 ----YS------IRPWQHVLEPLSGYIVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIV 276
Query: 278 AAFEKASGKKIPLVKSGR-RPGDAEIVYASTEKAERELNWKAKYGIDE 324
G + G P +A + KA +L W ++G+ E
Sbjct: 277 DKMVTLWGDDASWLLDGENHPHEAHYLKLDCSKANMQLGWHPRWGLTE 324
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 115/285 (40%), Gaps = 47/285 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K + + G G IGSH LL G K V +DN A + + L + N+TF +
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKVVGIDNF------ATGRREHLKDHP--NLTFVEG 73
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
+ D A + + + DAV+H A S + P ++++ LT + V+ A
Sbjct: 74 SIADHALVNQLIGDLQPDAVVHTAA------SYKDPDDWYNDTLTNCVGGSNVVQAAKKN 127
Query: 123 NL---VFSSSATAYGW-PKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
N+ V+ +A YG P P + P N S I + + + S +
Sbjct: 128 NVGRFVYFQTALCYGVKPIQQPVRLDHPRNPAN----SSYAISKSANEDYLEYSGLDFVT 183
Query: 179 LRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238
R N VG PR + L F +++ G++ +T RD++
Sbjct: 184 FRLANVVG---------PRNVSGPLPIFFQRLSEGKKCFVT-----------KARRDFVF 223
Query: 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKA 283
V DLA A +R +D VG Y+ +G ++ E+ A +A
Sbjct: 224 VKDLAR---ATVRAVD--GVGHGAYHFSSGTDVAIKELYDAVVEA 263
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 135/368 (36%), Gaps = 65/368 (17%)
Query: 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNN----- 56
+K L+ G G GS+ LL GY+ + AS +V + YQ +
Sbjct: 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKR--RASSFNTERVDHI--YQDPHTCNPK 56
Query: 57 MTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
H DL D + L + + D V + + V S + P D + GT+ LLE +
Sbjct: 57 FHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAI 116
Query: 117 AAHGC-KNLVFSSSATA--YGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSE 173
G K F ++T+ YG + +P E P +PY +KL+ I + S
Sbjct: 117 RFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGM 176
Query: 174 WKI--ILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGT 231
+ IL + +P + R I N +A G L + D
Sbjct: 177 YACNGILFNHESPRRGETFVTRKITRAIAN--------IAQGLESCLYLGNMD------- 221
Query: 232 VVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV---LEMVAA-------FE 281
+RD+ H D L++ + P E + + TG SV +EM AA FE
Sbjct: 222 SLRDWGHAKDYVKMQWMMLQQ-EQP----EDFVIATGVQYSVRQFVEMAAAQLGIKLRFE 276
Query: 282 -----------KASGKKIPLVKSGR----------RPGDAEIVYASTEKAERELNWKAKY 320
+G P VK G RP + E + KA +L WK +
Sbjct: 277 GTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEI 336
Query: 321 GIDEMCRD 328
+ EM +
Sbjct: 337 TLREMVSE 344
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 127/322 (39%), Gaps = 48/322 (14%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
I V GG G++G + VV+++ N + + + N+ + +
Sbjct: 5 IAVTGGTGFLGQY-------------VVESIKNDGNTPIILTRSIGNKAINDYEYR---V 48
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
D +++ DAV+H A + Q + F +N T L + + N+
Sbjct: 49 SDYTLEDLINQLNDVDAVVHLAATRGS----QGKISEFHDNEILTQNLYDACYENNISNI 104
Query: 125 VFSSSATAYGWPKVVPCTE-EFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
V++S+ +AY +P E E PL + YG SKL E I +++ I LR+
Sbjct: 105 VYASTISAYSDETSLPWNEKELPLPDL-XYGVSKLACEHIG-NIYSRKKGLCIKNLRF-- 160
Query: 184 PVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243
AH G E N F Q G + L + R++++ D A
Sbjct: 161 ---AHLYGFNEKNNYXIN---RFFRQAFHGEQLTLHA--------NSVAKREFLYAKDAA 206
Query: 244 DGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIV 303
I AL++ KV +N+G+G + E+ A G K L+ + P E +
Sbjct: 207 KSVIYALKQ---EKVSG-TFNIGSGDALTNYEVANTINNAFGNKDNLLV--KNPNANEGI 260
Query: 304 YAS---TEKAERELNWKAKYGI 322
++S + KA+ L++ Y
Sbjct: 261 HSSYXDSSKAKELLDFSTDYNF 282
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 75/345 (21%), Positives = 136/345 (39%), Gaps = 53/345 (15%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M ++ LV G G G++ LL GY+ V + S +++EL G +G+ + +
Sbjct: 13 MTRSALVTGITGQDGAYLAKLLLEKGYR--VHGLVARRSSDTRWRLREL-GIEGD-IQYE 68
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
D+ D +++ + V + A VG S +P+ + G LLE +
Sbjct: 69 DGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFS 128
Query: 121 CKNLVF-SSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
+ + +S++ +G + E P +PYG +KL+ W I +
Sbjct: 129 PETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLY------------GHW--ITV 174
Query: 180 RYFNPVGAHPSG----KGEDP-RGIP---NNLMPFVTQVAVGRRPALTVFGTDYSTKDGT 231
Y G H S E P RGI + V ++ +G++ L + D + +D
Sbjct: 175 NYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVD-AKRDWG 233
Query: 232 VVRDYIHVV------DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG 285
DY+ + D AD ++ A + C++ AFE
Sbjct: 234 FAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQI----------------AFEHVGL 277
Query: 286 KKIPLVK---SGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCR 327
+K + RP + +++ + KA+R L WK + +DE+ R
Sbjct: 278 DYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIR 322
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 22/165 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +LV G G +G V+ + L +EI G N +
Sbjct: 4 KRLLVTGAAGQLGR-------------VMRERLAPMAEILRLADLSPLDPAGPNEECVQC 50
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPL-PYFDNNLTGTITLLEVMAAHGC 121
DL D A+ + AG D ++H G+ SV+KP N+ G L E AHG
Sbjct: 51 DLADANAVNAMVAGC--DGIVHLGGI-----SVEKPFEQILQGNIIGLYNLYEAARAHGQ 103
Query: 122 KNLVFSSSATAYG-WPKVVPCTEEFPLQAMNPYGRSKLFIEEICR 165
+VF+SS G +P+ + P + YG SK F E + R
Sbjct: 104 PRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLAR 148
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 111/285 (38%), Gaps = 52/285 (18%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN-----------LDNASEIAVA--KVKEL 49
K ++VIGG GY G T L L Y+ +VDN L++ + IA ++
Sbjct: 2 KRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 61
Query: 50 AGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFD------ 103
G ++ + D+ D L F + D+V+HF GE P D
Sbjct: 62 KALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHF------GEQRSAPYSMIDRSRAVY 115
Query: 104 ---NNLTGTITLLEVMAAHGCK-NLVFSSSATAYGWPKV------VPCTEE-------FP 146
NN+ GT+ +L + G + +LV + YG P + + T +P
Sbjct: 116 TQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYP 175
Query: 147 LQAMNPYGRSKLF----IEEICR--DVHRSDSEWKIILLRYFNPVGAHPSGKGE-DPRGI 199
QA + Y SK+ I C+ + +D ++ + H + D +
Sbjct: 176 KQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAV 235
Query: 200 PNN-LMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243
L F Q AVG LTV+G T+ +RD + V++A
Sbjct: 236 FGTALNRFCVQAAVGH--PLTVYGKGGQTRGYLDIRDTVQCVEIA 278
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 114/294 (38%), Gaps = 28/294 (9%)
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLP--YFDNNLTGTITLLEV 115
T +L+L D A+ FA + D V + A K G P + N+ ++
Sbjct: 35 TRDELNLLDSRAVHDFFASERIDQV-YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHA 93
Query: 116 MAAHGCKNLVFSSSATAYGWPKVV--PCTEEFPLQAM-----NPYGRSKLFIEEICRDVH 168
+ L+F S+ Y PK+ P E LQ PY +K+ ++C +
Sbjct: 94 AHQNDVNKLLFLGSSCIY--PKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYN 151
Query: 169 RS-DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227
R +++ ++ N G H + + IP L F + + P + V+G+
Sbjct: 152 RQYGRDYRSVMPT--NLYGPHDNFHPSNSHVIPALLRRF-HEATAQKAPDVVVWGS---- 204
Query: 228 KDGTVVRDYIHVVDLADGHIAALRK-----LDDPKVGCEVYNLGTGKGTSVLEMVAAFEK 282
GT +R+++HV D+A I + L++ + N+GTG ++ E+ K
Sbjct: 205 --GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAK 262
Query: 283 ASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
G K +V +P + +L W + ++ + W +N
Sbjct: 263 VVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 22/165 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +LV G G +G V+ + L +EI G N +
Sbjct: 4 KRLLVTGAAGQLGR-------------VMRERLAPMAEILRLADLSPLDPAGPNEECVQC 50
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPL-PYFDNNLTGTITLLEVMAAHGC 121
DL D A+ + AG D ++H G+ SV+KP N+ G L E AHG
Sbjct: 51 DLADANAVNAMVAGC--DGIVHLGGI-----SVEKPFEQILQGNIIGLYNLYEAARAHGQ 103
Query: 122 KNLVFSSSATAYG-WPKVVPCTEEFPLQAMNPYGRSKLFIEEICR 165
+VF+SS G +P+ + P + G SK F E + R
Sbjct: 104 PRIVFASSNHTIGYYPQTERLGPDVPARPDGLAGVSKCFGENLAR 148
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 117/301 (38%), Gaps = 51/301 (16%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
I + G G+I SH +L G+ + D N E FH +DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE----------FHLVDL 81
Query: 65 RDKAALEVVFAGTK--FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
R V G F+ G+ + +S + Y NN + ++E +G K
Sbjct: 82 RVMENCLKVTEGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMIEAARINGIK 138
Query: 123 NLVFSSSATAYGWPKVVPCT-------EEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWK 175
++SSA Y K + T + +P + + YG KL EE+C+ ++ D +
Sbjct: 139 RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNK-DFGIE 197
Query: 176 IILLRYFN---PVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
+ R+ N P G G+ + P Q + R ++G DG
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREKAPAAFCRK-----AQTSTDR---FEMWG------DGLQ 243
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS---VLEMVAAFEKASGKKIP 289
R + + + +G + L K D E N+G+ + S + EMV +FE+ KK+P
Sbjct: 244 TRSFTFIDECVEG-VLRLTKSDFR----EPVNIGSDEMVSMNEMAEMVLSFEE---KKLP 295
Query: 290 L 290
+
Sbjct: 296 I 296
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 110/283 (38%), Gaps = 52/283 (18%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDN-----------LDNASEIAVA--KVKELAG 51
++VIGG GY G T L L Y+ +VDN L++ + IA ++
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 73
Query: 52 YQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFD-------- 103
G ++ + D+ D L F + D+V+HF GE P D
Sbjct: 74 LTGKSIELYVGDICDFEFLAESFKSFEPDSVVHF------GEQRSAPYSMIDRSRAVYTQ 127
Query: 104 -NNLTGTITLLEVMAAHGCK-NLVFSSSATAYGWPKV------VPCTEE-------FPLQ 148
NN+ GT+ +L + G + +LV + YG P + + T +P Q
Sbjct: 128 HNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQ 187
Query: 149 AMNPYGRSKLF----IEEICR--DVHRSDSEWKIILLRYFNPVGAHPSGKGE-DPRGIPN 201
A + Y SK+ I C+ + +D ++ + H + D +
Sbjct: 188 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 247
Query: 202 N-LMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243
L F Q AVG LTV+G T+ +RD + V++A
Sbjct: 248 TALNRFCVQAAVGH--PLTVYGKGGQTRGYLDIRDTVQCVEIA 288
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 113/294 (38%), Gaps = 28/294 (9%)
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLP--YFDNNLTGTITLLEV 115
T +L+L D A+ FA + D V + A K G P + N+ ++
Sbjct: 35 TRDELNLLDSRAVHDFFASERIDQV-YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHA 93
Query: 116 MAAHGCKNLVFSSSATAYGWPKVV--PCTEEFPLQAM-----NPYGRSKLFIEEICRDVH 168
+ L+F S+ Y PK+ P E LQ PY +K+ ++C +
Sbjct: 94 AHQNDVNKLLFLGSSCIY--PKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYN 151
Query: 169 RS-DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227
R +++ ++ N G H + + IP L F + P + V+G+
Sbjct: 152 RQYGRDYRSVMPT--NLYGPHDNFHPSNSHVIPALLRRF-HEATAQNAPDVVVWGS---- 204
Query: 228 KDGTVVRDYIHVVDLADGHIAALRK-----LDDPKVGCEVYNLGTGKGTSVLEMVAAFEK 282
GT +R+++HV D+A I + L++ + N+GTG ++ E+ K
Sbjct: 205 --GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAK 262
Query: 283 ASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
G K +V +P + +L W + ++ + W +N
Sbjct: 263 VVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 110/283 (38%), Gaps = 52/283 (18%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDN-----------LDNASEIAVA--KVKELAG 51
++VIGG GY G T L L Y+ +VDN L++ + IA ++
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 73
Query: 52 YQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFD-------- 103
G ++ + D+ D L F + D+V+HF GE P D
Sbjct: 74 LTGKSIELYVGDICDFEFLAESFKSFEPDSVVHF------GEQRSAPYSMIDRSRAVYTQ 127
Query: 104 -NNLTGTITLLEVMAAHGCK-NLVFSSSATAYGWPKV------VPCTEE-------FPLQ 148
NN+ GT+ +L + G + +LV + YG P + + T +P Q
Sbjct: 128 HNNVIGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQ 187
Query: 149 AMNPYGRSKLF----IEEICR--DVHRSDSEWKIILLRYFNPVGAHPSGKGE-DPRGIPN 201
A + Y SK+ I C+ + +D ++ + H + D +
Sbjct: 188 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 247
Query: 202 N-LMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243
L F Q AVG LTV+G T+ +RD + V++A
Sbjct: 248 TALNRFCVQAAVGH--PLTVYGKGGQTRGYLDIRDTVQCVEIA 288
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 116/301 (38%), Gaps = 51/301 (16%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
I + G G+I SH +L G+ + D N E FH +DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE----------FHLVDL 81
Query: 65 RDKAALEVVFAGTK--FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
R V G F+ G+ + +S + Y NN + ++E +G K
Sbjct: 82 RVMENCLKVTEGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMIEAARINGIK 138
Query: 123 NLVFSSSATAYGWPKVVPCT-------EEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWK 175
++SSA Y K + T + +P + + YG KL EE+C+ ++ D +
Sbjct: 139 RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNK-DFGIE 197
Query: 176 IILLRYFN---PVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
+ R+ N P G G+ P Q + R ++G DG
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREAAPAAFCRK-----AQTSTDR---FEMWG------DGLQ 243
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS---VLEMVAAFEKASGKKIP 289
R + + + +G + L K D E N+G+ + S + EMV +FE+ KK+P
Sbjct: 244 TRSFTFIDECVEG-VLRLTKSDFR----EPVNIGSDEMVSMNEMAEMVLSFEE---KKLP 295
Query: 290 L 290
+
Sbjct: 296 I 296
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 117/301 (38%), Gaps = 51/301 (16%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
I + G G+I SH +L G+ + D N E FH +DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE----------FHLVDL 81
Query: 65 RDKAALEVVFAGTK--FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
R V G F+ G+ + +S + Y NN + ++E +G K
Sbjct: 82 RVMENCLKVTEGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMIEAARINGIK 138
Query: 123 NLVFSSSATAYGWPKVVPCT-------EEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWK 175
++SSA Y K + T + +P + + YG +L EE+C+ ++ D +
Sbjct: 139 RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNK-DFGIE 197
Query: 176 IILLRYFN---PVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
+ R+ N P G G+ + P Q + R ++G DG
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREKAPAAFCRK-----AQTSTDR---FEMWG------DGLQ 243
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS---VLEMVAAFEKASGKKIP 289
R + + + +G + L K D E N+G+ + S + EMV +FE+ KK+P
Sbjct: 244 TRSFTFIDECVEG-VLRLTKSDFR----EPVNIGSDEMVSMNEMAEMVLSFEE---KKLP 295
Query: 290 L 290
+
Sbjct: 296 I 296
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 117/301 (38%), Gaps = 51/301 (16%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
I + G G+I SH +L G+ + D N E FH +DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE----------FHLVDL 81
Query: 65 RDKAALEVVFAGTK--FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
R V G F+ G+ + +S + Y NN + ++E +G K
Sbjct: 82 RVMENCLKVTEGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMIEAARINGIK 138
Query: 123 NLVFSSSATAYGWPKVVPCT-------EEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWK 175
++SSA Y K + T + +P + + +G KL EE+C+ ++ D +
Sbjct: 139 RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNK-DFGIE 197
Query: 176 IILLRYFN---PVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
+ R+ N P G G+ + P Q + R ++G DG
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREKAPAAFCRK-----AQTSTDR---FEMWG------DGLQ 243
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS---VLEMVAAFEKASGKKIP 289
R + + + +G + L K D E N+G+ + S + EMV +FE+ KK+P
Sbjct: 244 TRSFTFIDECVEG-VLRLTKSDFR----EPVNIGSDEMVSMNEMAEMVLSFEE---KKLP 295
Query: 290 L 290
+
Sbjct: 296 I 296
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 113/294 (38%), Gaps = 28/294 (9%)
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLP--YFDNNLTGTITLLEV 115
T +L+L D A+ FA + D V + A K G P + N+ ++
Sbjct: 35 TRDELNLLDSRAVHDFFASERIDQV-YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHA 93
Query: 116 MAAHGCKNLVFSSSATAYGWPKVV--PCTEEFPLQAM-----NPYGRSKLFIEEICRDVH 168
+ L+F S+ Y PK+ P E LQ PY +++ ++C +
Sbjct: 94 AHQNDVNKLLFLGSSCIY--PKLAKQPMAESELLQGTLEPTNEPYAIARIAGIKLCESYN 151
Query: 169 RS-DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227
R +++ ++ N G H + + IP L F + P + V+G+
Sbjct: 152 RQYGRDYRSVMPT--NLYGPHDNFHPSNSHVIPALLRRF-HEATAQSAPDVVVWGS---- 204
Query: 228 KDGTVVRDYIHVVDLADGHIAALRK-----LDDPKVGCEVYNLGTGKGTSVLEMVAAFEK 282
GT +R+++HV D+A I + L++ + N+GTG ++ E+ K
Sbjct: 205 --GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAK 262
Query: 283 ASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
G K +V +P + +L W + ++ + W +N
Sbjct: 263 VVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 113/294 (38%), Gaps = 28/294 (9%)
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLP--YFDNNLTGTITLLEV 115
T +L+L D A+ FA + D V + A K G P + N+ ++
Sbjct: 35 TRDELNLLDSRAVHDFFASERIDQV-YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHA 93
Query: 116 MAAHGCKNLVFSSSATAYGWPKVV--PCTEEFPLQAM-----NPYGRSKLFIEEICRDVH 168
+ L+F S+ Y PK+ P E LQ PY +K+ ++C +
Sbjct: 94 AHQNDVNKLLFLGSSCIY--PKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYN 151
Query: 169 RS-DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227
R +++ ++ N G H + + IP L F + P + V+G+
Sbjct: 152 RQYGRDYRSVMPT--NLYGPHDNFHPSNSHVIPALLRRF-HEATAQNAPDVVVWGS---- 204
Query: 228 KDGTVVRDYIHVVDLADGHIAALRK-----LDDPKVGCEVYNLGTGKGTSVLEMVAAFEK 282
GT +R+++HV D+A I + L++ + N+GTG ++ ++ K
Sbjct: 205 --GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRDLAQTIAK 262
Query: 283 ASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
G K +V +P + +L W + ++ + W +N
Sbjct: 263 VVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 113/294 (38%), Gaps = 28/294 (9%)
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLP--YFDNNLTGTITLLEV 115
T +L+L D A+ FA + D V + A K G P + N+ ++
Sbjct: 35 TRDELNLLDSRAVHDFFASERIDQV-YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHA 93
Query: 116 MAAHGCKNLVFSSSATAYGWPKVV--PCTEEFPLQAM-----NPYGRSKLFIEEICRDVH 168
+ L+F ++ Y PK+ P E LQ PY +K+ ++C +
Sbjct: 94 AHQNDVNKLLFLGASCIY--PKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYN 151
Query: 169 RS-DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227
R +++ ++ N G H + + IP L F + P + V+G+
Sbjct: 152 RQYGRDYRSVMPT--NLYGPHDNFHPSNSHVIPALLRRF-HEATAQSAPDVVVWGS---- 204
Query: 228 KDGTVVRDYIHVVDLADGHIAALRK-----LDDPKVGCEVYNLGTGKGTSVLEMVAAFEK 282
GT +R+++HV D+A I + L++ + N+GTG ++ E+ K
Sbjct: 205 --GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAK 262
Query: 283 ASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
G K +V +P + +L W + ++ + W +N
Sbjct: 263 VVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 126/345 (36%), Gaps = 55/345 (15%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K + V G G+ G L L G TV +L + ++ + +A + M
Sbjct: 10 KRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFETARVA----DGMQSEIG 64
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLE-VMAAHGC 121
D+RD+ L + + V H A V S +P+ + N+ GT+ LLE + G
Sbjct: 65 DIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGV 124
Query: 122 KNLVFSSSATAYG---WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
K +V +S Y W + E + +PY SK E + S
Sbjct: 125 KAVVNITSDKCYDNKEW--IWGYRENEAMGGYDPYSNSKGCAELVTSSYRNS-------- 174
Query: 179 LRYFNPV--GAHPS-------------GKGEDPRGIPNNLMPF-VTQVAVGRRPALTVFG 222
+FNP G H + G R +P+ L F +Q + R P
Sbjct: 175 --FFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPH----- 227
Query: 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKL-DDPKVGCEVYNLG--TGKGTSVLEMVAA 279
+R + HV++ G++ +KL D E +N G T V +V
Sbjct: 228 ---------AIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQ 278
Query: 280 FEKASGKKIPLVKSGR-RPGDAEIVYASTEKAERELNWKAKYGID 323
K G+ G P +A + KA+ +L W ++ ++
Sbjct: 279 MVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLN 323
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 112/294 (38%), Gaps = 28/294 (9%)
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLP--YFDNNLTGTITLLEV 115
T +L+L D A+ FA + D V + A K G P + N+ ++
Sbjct: 35 TRDELNLLDSRAVHDFFASERIDQV-YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHA 93
Query: 116 MAAHGCKNLVFSSSATAYGWPKVV--PCTEEFPLQAM-----NPYGRSKLFIEEICRDVH 168
+ L+F S+ Y PK+ P E LQ P +K+ ++C +
Sbjct: 94 AHQNDVNKLLFLGSSCIY--PKLAKQPMAESELLQGTLEPTNEPEAIAKIAGIKLCESYN 151
Query: 169 RS-DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227
R +++ ++ N G H + + IP L F + P + V+G+
Sbjct: 152 RQYGRDYRSVMPT--NLYGPHDNFHPSNSHVIPALLRRF-HEATAQSAPDVVVWGS---- 204
Query: 228 KDGTVVRDYIHVVDLADGHIAALRK-----LDDPKVGCEVYNLGTGKGTSVLEMVAAFEK 282
GT +R+++HV D+A I + L++ + N+GTG ++ E+ K
Sbjct: 205 --GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAK 262
Query: 283 ASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
G K +V +P + +L W + ++ + W +N
Sbjct: 263 VVGYKGRVVFDASKPDGTPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLEN 315
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 22/165 (13%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M +LV G G +GS ++ LG A E+ ++ + +L + +
Sbjct: 1 MLNRLLVTGAAGGVGS--AIRPHLGTL----------AHEVRLSDIVDLGAAEAHEEIV- 47
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPL-PYFDNNLTGTITLLEVMAAH 119
DL D A+ + D +IH G+ SV++P N+ G L E
Sbjct: 48 ACDLADAQAVHDLV--KDCDGIIHLGGV-----SVERPWNDILQANIIGAYNLYEAARNL 100
Query: 120 GCKNLVFSSSATAYGW-PKVVPCTEEFPLQAMNPYGRSKLFIEEI 163
G +VF+SS G+ P+ E P + + YG SK F E++
Sbjct: 101 GKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDL 145
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 5 ILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
ILV G G IG+ V L G K V+ AS+I V+ G + F LD
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVI------ASDI----VQRDTG----GIKFITLD 47
Query: 64 LRDKAALEVVFAGTKFDAVIHFAG-LKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
+ ++ ++ DA+ H AG L A GE + P + N+ GT +LE H +
Sbjct: 48 VSNRDEIDRAVEKYSIDAIFHLAGILSAKGE--KDPALAYKVNMNGTYNILEAAKQHRVE 105
Query: 123 NLVFSSSATAYG 134
+V S+ +G
Sbjct: 106 KVVIPSTIGVFG 117
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 5 ILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
ILV G G IG+ V L G K V+ AS+I V+ G + F LD
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVI------ASDI----VQRDTG----GIKFITLD 47
Query: 64 LRDKAALEVVFAGTKFDAVIHFAG-LKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
+ ++ ++ DA+ H AG L A GE + P + N+ GT +LE H +
Sbjct: 48 VSNRDEIDRAVEKYSIDAIFHLAGILSAKGE--KDPALAYKVNMNGTYNILEAAKQHRVE 105
Query: 123 NLVFSSSATAYG 134
+V S+ +G
Sbjct: 106 KVVIPSTIGVFG 117
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 16/138 (11%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV G G++ SH V QLL GYK V +AS++A + + A Y G T D+
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYK--VRGTARSASKLANLQKRWDAKYPGRFETAVVEDM 71
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLT----GTITLLEVMAAH- 119
+ A + V G V H A + + +D +T GT+ L AA
Sbjct: 72 LKQGAYDEVIKGAA--GVAHIASVVSFSNK-------YDEVVTPAIGGTLNALRAAAATP 122
Query: 120 GCKNLVFSSSATAYGWPK 137
K V +SS + PK
Sbjct: 123 SVKRFVLTSSTVSALIPK 140
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 24/191 (12%)
Query: 3 KNILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHK 61
+ IL+ GG G G V ++L K ++V + D + +A + M F
Sbjct: 22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMA-----MEFNDPRMRFFI 76
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D+RD L G D IH A LK V + PL N+ G ++ +
Sbjct: 77 GDVRDLERLNYALEGV--DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAI 134
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE--ICRDVHRSDSEWKIILL 179
++ S+ A +N YG +KL ++ + + + S+ + ++
Sbjct: 135 SQVIALSTDKAAN--------------PINLYGATKLCSDKLFVSANNFKGSSQTQFSVV 180
Query: 180 RYFNPVGAHPS 190
RY N VG+ S
Sbjct: 181 RYGNVVGSRGS 191
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 10/171 (5%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+I +IG G +G +L+ G ++ ++ + I V + + AG+ G + D
Sbjct: 16 HIAIIGAAGXVGRKLTQRLVKDG--SLGGKPVEKFTLIDVFQPEAPAGFSGA-VDARAAD 72
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
L E + + D + H A + + GE+ + NL GT L + + K+
Sbjct: 73 LSAPGEAEKLVE-ARPDVIFHLAAIVS-GEAELDFDKGYRINLDGTRYLFDAIRIANGKD 130
Query: 124 -----LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHR 169
+VF+SS +G P P +EF + YG K E + D R
Sbjct: 131 GYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSR 181
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 16/138 (11%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV G G++ SH V QLL GYK V +AS++A + + A Y G T D
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYK--VRGTARSASKLANLQKRWDAKYPGRFETAVVEDX 71
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLT----GTITLLEVMAAH- 119
+ A + V G V H A + + +D +T GT+ L AA
Sbjct: 72 LKQGAYDEVIKGAA--GVAHIASVVSFSNK-------YDEVVTPAIGGTLNALRAAAATP 122
Query: 120 GCKNLVFSSSATAYGWPK 137
K V +SS + PK
Sbjct: 123 SVKRFVLTSSTVSALIPK 140
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
Query: 2 AKNILVIGGVGYIGSHTVLQLLL--GGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTF 59
A +LV GG G +G+ L++ G V+V A+ A V +L Y G ++
Sbjct: 530 AGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAY-GAEVSL 588
Query: 60 HKLDLRDKAALEVVFAGT----KFDAVIHFAGLKAVGESVQKPLPYFDNNLT----GTIT 111
D+ D+ L V A AV+H AG+ G S + D L G
Sbjct: 589 QACDVADRETLAKVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARN 648
Query: 112 LLEVM 116
LLE++
Sbjct: 649 LLELI 653
>pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia
Coli
pdb|3ASU|B Chain B, Crystal Structure Of Serine Dehydrogenase From Escherichia
Coli
pdb|3ASV|A Chain A, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|B Chain B, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|C Chain C, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|D Chain D, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|E Chain E, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|F Chain F, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
Length = 248
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 31/180 (17%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+LV G G + + G+K + A+ +++EL G+N+ +LD+
Sbjct: 3 VLVTGATAGFGECITRRFIQQGHKVI-------ATGRRQERLQELKDELGDNLYIAQLDV 55
Query: 65 RDKAALEVVFAG-----TKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH 119
R++AA+E + A D +++ AGL E K ++ E M
Sbjct: 56 RNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHK----------ASVEDWETMIDT 105
Query: 120 GCKNLVFSSSATAYGWPK--------VVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD 171
K LV+ + A G + + +P N YG +K F+ + ++ R+D
Sbjct: 106 NNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNL-RTD 164
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKT-VVVDNLDNASEIA-VAKVKELAGYQGNNMTFH 60
K V+GG G++ S V LL GY V + DN +++ + +++EL ++
Sbjct: 10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELG-----DLKIF 64
Query: 61 KLDLRDKAALEVVFAGTKF----DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
+ DL D+ + E AG F +HFA + + KP + G + +++
Sbjct: 65 RADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMI-KP------AIQGVVNVMKAC 117
Query: 117 A-AHGCKNLVFSSSATA 132
A K ++ +SSA A
Sbjct: 118 TRAKSVKRVILTSSAAA 134
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGY--QGNNMTF 59
++ + V G G+IGS V++LL GY TV D + V KVK L ++T
Sbjct: 5 SETVCVTGASGFIGSWLVMRLLERGY-TVRATVRDPTN---VKKVKHLLDLPKAETHLTL 60
Query: 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLE-VMAA 118
K DL D+ + + G V H A ES + G + +++ AA
Sbjct: 61 WKADLADEGSFDEAIKGCT--GVFHVATPMDF-ESKDPENEVIKPTIEGMLGIMKSCAAA 117
Query: 119 HGCKNLVFSSSA 130
+ LVF+SSA
Sbjct: 118 KTVRRLVFTSSA 129
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 75/346 (21%), Positives = 132/346 (38%), Gaps = 49/346 (14%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+L++G G+IG+H +LL + V LD S+ A+++ N+ FH ++
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVY--GLDIGSD-AISRFL-------NHPHFHFVEG 65
Query: 65 RDKAALE-VVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
E + + K D V+ + E + PL F+ + + ++ + K
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KR 124
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNP-------YGRSKLFIEEICRDVHRSDSEWKI 176
++F S+A YG E+ + P Y SK ++ + + +
Sbjct: 125 IIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIW-AYGEKEGLQF 183
Query: 177 ILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
L R FN +G PR N + A+ + V G+ DG +
Sbjct: 184 TLFRPFNWMG---------PRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRC 234
Query: 237 IHVVDLADGHIAALRKLDDPKVGC--EVYNLGTGKGTSVLEMVAAFEKASGKKIPL---- 290
D+ DG A R +++ C E+ N+G + + +E + AS +K PL
Sbjct: 235 F--TDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHF 292
Query: 291 --------VKS----GRRPGDAEIVYASTEKAERELNWKAKYGIDE 324
V+S G+ D E S A R L+W+ K + E
Sbjct: 293 PPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 338
>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
Length = 511
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+L+ GG+G IG +L G + +V+ + A++ E G + D
Sbjct: 261 TVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACD 320
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGL 88
+ ++ AL + +AV H AG+
Sbjct: 321 VAERDALAALVTAYPPNAVFHTAGI 345
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Query: 57 MTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
M H DL D ++L K D V + A V S + P D TG + LLE +
Sbjct: 85 MKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 144
Query: 117 AAH----GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSK 157
+H G + + ++ P +E P +PY SK
Sbjct: 145 RSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASK 189
>pdb|3S55|A Chain A, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|B Chain B, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|C Chain C, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|D Chain D, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|E Chain E, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|F Chain F, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|G Chain G, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|H Chain H, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
Length = 281
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 19/133 (14%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA--------VAKVKELAGYQG 54
K L+ GG +G + L G + D +N+ + +A+ L G
Sbjct: 11 KTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG 70
Query: 55 NNMTFHKLDLRDKAALEVVFAGTK-----FDAVIHFAGLKAVG-----ESVQKPLPYFDN 104
K+D++D+AALE A + D I AG+ + ES Q
Sbjct: 71 RRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWD-EVIGT 129
Query: 105 NLTGTITLLEVMA 117
NLTGT + +A
Sbjct: 130 NLTGTFNTIAAVA 142
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVV 31
M IL+ GG GYIG+H V L G+ T V
Sbjct: 6 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYV 36
>pdb|2FC9|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 101
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 280 FEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELN 315
FEKA+ K+P ++G+ G A I +AS E A+ LN
Sbjct: 36 FEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 71
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVV 31
M IL+ GG GYIG+H V L G+ T V
Sbjct: 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYV 40
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVV 31
M IL+ GG GYIG+H V L G+ T V
Sbjct: 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYV 40
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVV 31
M IL+ GG GYIG+H V L G+ T V
Sbjct: 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYV 40
>pdb|3ORF|A Chain A, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|B Chain B, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|C Chain C, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|D Chain D, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
Length = 251
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37
M+KNILV+GG G +G+ V + T+ +D +N
Sbjct: 21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFREN 57
>pdb|2JZC|A Chain A, Nmr Solution Structure Of Alg13: The Sugar Donor Subunit
Of A Yeast N-Acetylglucosamine Transferase. Northeast
Structural Genomics Consortium Target Yg1
Length = 224
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 218 LTVFGTDYSTKDGTVVRDYIHVV--DLADGHIAALRKLDDPKVGC 260
L V G D+STK +++RDY +V G I +L+ P + C
Sbjct: 114 LKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVC 158
>pdb|2KS6|A Chain A, Nmr Solution Structure Of Alg13 --- Obtained With
Iterative Cs-Rosetta From Backbone Nmr Data
Length = 201
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 218 LTVFGTDYSTKDGTVVRDYIHVV--DLADGHIAALRKLDDPKVGC 260
L V G D+STK +++RDY +V G I +L+ P + C
Sbjct: 91 LKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVC 135
>pdb|1PJT|A Chain A, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
pdb|1PJT|B Chain B, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
Length = 457
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 234 RDYIHVVDLADGHIAALRKLDDPKVGCE----VYNLGTGKGTSVLEMVAAFEKASGKKIP 289
RDY V L GH+ +LD + E V+ +G + ++ E + AF + +
Sbjct: 347 RDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVA 406
Query: 290 LVKSG 294
LV++G
Sbjct: 407 LVENG 411
>pdb|1PJQ|A Chain A, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJQ|B Chain B, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJS|A Chain A, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
pdb|1PJS|B Chain B, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
Length = 457
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 234 RDYIHVVDLADGHIAALRKLDDPKVGCE----VYNLGTGKGTSVLEMVAAFEKASGKKIP 289
RDY V L GH+ +LD + E V+ +G + ++ E + AF + +
Sbjct: 347 RDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVA 406
Query: 290 LVKSG 294
LV++G
Sbjct: 407 LVENG 411
>pdb|1DIR|A Chain A, Crystal Structure Of A Monoclinic Form Of
Dihydropteridine Reductase From Rat Liver
pdb|1DIR|B Chain B, Crystal Structure Of A Monoclinic Form Of
Dihydropteridine Reductase From Rat Liver
pdb|1DIR|C Chain C, Crystal Structure Of A Monoclinic Form Of
Dihydropteridine Reductase From Rat Liver
pdb|1DIR|D Chain D, Crystal Structure Of A Monoclinic Form Of
Dihydropteridine Reductase From Rat Liver
pdb|1DHR|A Chain A, Crystal Structure Of Rat Liver Dihydropteridine
Reductase
Length = 241
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHK 61
A+ +LV GG G +GS V + +D ++N A VK MT
Sbjct: 7 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVK---------MTDSF 57
Query: 62 LDLRDKAALEV--VFAGTKFDAVIHFAGLKAVGESVQKPL 99
+ D+ EV + K DA++ AG A G + K L
Sbjct: 58 TEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSL 97
>pdb|1HDR|A Chain A, The Crystallographic Structure Of A Human Dihydropteridine
Reductase Nadh Binary Complex Expressed In Escherichia
Coli By A Cdna Constructed From Its Rat Homologue
Length = 244
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHK 61
A+ +LV GG G +GS V + VD ++N A VK MT
Sbjct: 10 ARRVLVYGGRGALGSRCVQAFRARNWWVASVDVVENEEASASIIVK---------MTDSF 60
Query: 62 LDLRDKAALEV--VFAGTKFDAVIHFAGLKAVGESVQKPL 99
+ D+ EV + K DA++ AG A G + K L
Sbjct: 61 TEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSL 100
>pdb|1MG5|A Chain A, Crystal Structure Of Drosophila Melanogaster Alcohol
Dehydrogenase Complexed With Nadh And Acetate At 1.6 A
pdb|1MG5|B Chain B, Crystal Structure Of Drosophila Melanogaster Alcohol
Dehydrogenase Complexed With Nadh And Acetate At 1.6 A
Length = 255
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKT-VVVDNLDNASEIAVAKVKELAGYQGNNMTFHK 61
KN++ + G+G IG T +LL K V++D ++N + IA K A +TF+
Sbjct: 7 KNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELK----AINPKVTVTFYP 62
Query: 62 LDLRDKAA-----LEVVFAGTK-FDAVIHFAGL 88
D+ A L+ +FA K D +I+ AG+
Sbjct: 63 YDVTVPIAETTKLLKTIFAQLKTVDVLINGAGI 95
>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
Lanata
pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
Lanata In Complex With Nadp
Length = 364
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 100 PYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCT------EEFPLQAMNPY 153
PY NL GT+ + + H K L F+ A W C+ E A++PY
Sbjct: 186 PYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAA--WDGYSDCSDADLIAEHHIWAAVDPY 243
Query: 154 GRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSG 191
+++ F DV + WK++ ++ G + G
Sbjct: 244 AKNEAF-NVSNGDVFKWKHFWKVLAEQFGVECGEYEEG 280
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 24 LGGYKTV--VVDNLDNASEIAVAKVKELAGYQGNNMTFHKL-DLRDKAALE---VVFAGT 77
+GG K + ++D DN+ I ++K+ G+ + ++ DL D A ++ + G
Sbjct: 9 IGGLKELFKMIDT-DNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGE 67
Query: 78 KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
A +H L+ E++ YFD + +G ITL E+ A CK+
Sbjct: 68 FIAATVHLNKLERE-ENLVSAFSYFDKDGSGYITLDEIQQA--CKDF 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,191,343
Number of Sequences: 62578
Number of extensions: 490397
Number of successful extensions: 1578
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1368
Number of HSP's gapped (non-prelim): 119
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)