BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040587
(159 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/168 (73%), Positives = 132/168 (78%), Gaps = 18/168 (10%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
AASE+ G+G ++MRKTAGKPKPVSSGS WYGPDRVKYL P SG AP YLTGEF GDYGWD
Sbjct: 22 AASEVFGEGRVSMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWD 81
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIHARWAMLG L C FKAG+QIFSE
Sbjct: 82 TAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 141
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 142 GGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEVVDPL 189
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 121/168 (72%), Positives = 133/168 (79%), Gaps = 18/168 (10%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++S++ G+G +TMRKTAG+PKPVSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 23 SSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWD 82
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSE
Sbjct: 83 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 142
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 143 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 190
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/170 (71%), Positives = 133/170 (78%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AS++ G+G ITMRKTAGKPKPVSSGS WYGPDRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+TDP+
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPI 190
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 123/167 (73%), Positives = 130/167 (77%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
ASEI G+G +TMRKTAGKPK VSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWDT
Sbjct: 24 ASEILGEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDT 83
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE F+KNREL+VIH RWAMLG L C FKAG+QIFSEG
Sbjct: 84 AGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 143
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 144 GLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 190
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 122/168 (72%), Positives = 129/168 (76%), Gaps = 18/168 (10%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
+ S I G+G ITMRKTA K K VSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWD
Sbjct: 23 SVSNIVGEGRITMRKTASKSKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 82
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSE
Sbjct: 83 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSE 142
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGE+TDPL
Sbjct: 143 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLGEITDPL 190
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 238 bits (606), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 122/170 (71%), Positives = 130/170 (76%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G +TMRKTA K KPVSSGS WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 20 SPSSSEITGNGKVTMRKTASKAKPVSSGSLWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPL 189
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/170 (71%), Positives = 130/170 (76%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G +TMRKTA K KPVSSGS WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSSSEITGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 190
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/170 (71%), Positives = 130/170 (76%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G +TMRKTA K KPVSSGS WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSSSEITGNGKVTMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 190
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/167 (73%), Positives = 129/167 (77%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
ASEI +G +TMRKTAGKPK VSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWDT
Sbjct: 24 ASEILSEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDT 83
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE F+KNREL+VIH RWAMLG L C FKAG+QIFSEG
Sbjct: 84 AGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 143
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 144 GLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 190
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 130/170 (76%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SE+ G G +TMRKTA K KPVSSGS WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 20 SPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 189
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/167 (73%), Positives = 128/167 (76%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
ASEI G+G ITMRKTAGKPK V S S WYGPDRVKYL P SG +P YLTGEFPGDYGWDT
Sbjct: 24 ASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDT 83
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIFSEG
Sbjct: 84 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 143
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 144 GLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 190
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/167 (73%), Positives = 128/167 (76%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
ASEI G+G ITMRKTAGK K VSS S WYGPDRVKYL P SG +P YLTGEFPGDYGWDT
Sbjct: 24 ASEILGEGRITMRKTAGKTKSVSSDSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDT 83
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE F KNREL+VIH RWAMLG L C FKAGAQIFSEG
Sbjct: 84 AGLSADPETFTKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 143
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QVILMGA+ GY AGGPLGEVTDPL
Sbjct: 144 GLDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPL 190
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 129/170 (75%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G +TMRKTA K KP SSGS WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 190
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 234 bits (598), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 119/168 (70%), Positives = 129/168 (76%), Gaps = 18/168 (10%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
+ASE+ G G ++MRKT G+PKPVSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 23 SASELLGVGRVSMRKTGGRPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWD 82
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSE
Sbjct: 83 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 142
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NP+L+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 143 GGLDYLGNPNLVHAQSILAIWATQVLLMGAVEGYRIAGGPLGEVIDPL 190
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 234 bits (598), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 129/170 (75%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G +TMRKTA K KP SSGS WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 190
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 234 bits (597), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 121/170 (71%), Positives = 128/170 (75%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G TMRKT K KPVSSGS WYGPDRVKYL P SG AP YLTGEFPGDYG
Sbjct: 21 SPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 81 WDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 190
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/168 (71%), Positives = 128/168 (76%), Gaps = 18/168 (10%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++S + G G TMRKTAGKPK VSSGS WYGP+RVKYL P SG AP YLTGEFPGDYGWD
Sbjct: 34 SSSVVSGDGRFTMRKTAGKPKTVSSGSPWYGPERVKYLGPFSGEAPSYLTGEFPGDYGWD 93
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSE
Sbjct: 94 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 153
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 154 GGLDYLGNPSLVHAQSILAIWATQVLLMGAVEGYRVAGGPLGEVVDPL 201
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 129/170 (75%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SE+ G G +TMRKTA K KPVSSGS WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 20 SPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AG PLGEV DPL
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPL 189
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 129/170 (75%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G +TMRKTA K K VSSGS WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 190
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 129/170 (75%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G +TMRKT K KP+SSGS WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 190
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 128/170 (75%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G MRKT K KPVSSGS WYGPDRVKYL P SG AP YLTGEFPGDYG
Sbjct: 21 SPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGA+ GY AGGPLGEVTDPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPL 190
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 128/170 (75%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G MRKT K KPVSSGS WYGPDRVKYL P SG AP YLTGEFPGDYG
Sbjct: 21 SPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGA+ GY AGGPLGEVTDPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPL 190
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/168 (70%), Positives = 130/168 (77%), Gaps = 18/168 (10%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
+ S++ G+G I+MRK+AGKPK VSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWD
Sbjct: 23 STSDMIGEGRISMRKSAGKPKNVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 82
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE F+KNREL+VIH RWAMLG L C FKAG+QIFSE
Sbjct: 83 TAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 142
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 143 GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPL 190
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/166 (72%), Positives = 127/166 (76%), Gaps = 18/166 (10%)
Query: 5 SEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
S+I G+G ITMRKTAGK K VSS S WYGPDRVKYL P SG AP YLTGEFPGDYGWDTA
Sbjct: 25 SQILGEGRITMRKTAGKTKNVSSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTA 84
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGG 106
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGG
Sbjct: 85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 144
Query: 107 LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LDYL NPSL+HAQSILA+WA QVILMGA+ GY AGGPLGEV DPL
Sbjct: 145 LDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVIDPL 190
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/167 (71%), Positives = 126/167 (75%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
A + G ITMRKT K KPVSSGS WYGPDRVKYL P SG +P YLTGEFPGDYGWDT
Sbjct: 21 APSVQDTGRITMRKTTTKSKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDT 80
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 81 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 140
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 141 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPL 187
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 128/170 (75%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G ITMRK+ K KP SSGS WYGPDRVKYL P SG AP YLTGEFPGDYG
Sbjct: 21 SPSSSEITGNGRITMRKSVAKAKPASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 190
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/168 (70%), Positives = 130/168 (77%), Gaps = 18/168 (10%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
AA+++ G+G ITMRK+A KPKP +SGS WYG DRV YL PLSG P YLTGEFPGDYGWD
Sbjct: 17 AAAKVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWD 76
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSE
Sbjct: 77 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 136
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSILA+WA+QV+LMGAV GY AGGPLGEV DPL
Sbjct: 137 GGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPL 184
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/168 (70%), Positives = 127/168 (75%), Gaps = 18/168 (10%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++S+I G G TMRKT K KPVSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWD
Sbjct: 22 SSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 81
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIFSE
Sbjct: 82 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSE 141
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 142 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPL 189
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 120/166 (72%), Positives = 126/166 (75%), Gaps = 21/166 (12%)
Query: 5 SEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
SEI G GCI+MRKT KPV SGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA
Sbjct: 24 SEIMGNGCISMRKTT---KPVPSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTA 80
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGG 106
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGG
Sbjct: 81 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGG 140
Query: 107 LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 141 LDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPI 186
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 126/170 (74%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G +TMRKT K KP SS S WYGPDRVKYL P SG AP YLTGEFP DYG
Sbjct: 21 SSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPL 190
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 128/170 (75%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++ EI G G +TMRKT K KPVSSGS WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSSYEIIGNGKVTMRKTVIKAKPVSSGSPWYGPDRVKYLGPFSGNSPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 190
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 117/162 (72%), Positives = 125/162 (77%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+G ITMRKTA KPK +SGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 24 GEGRITMRKTAAKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 83
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 84 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 143
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSLIHAQSILA+WA+QV+LMGAV GY AGGPLGEV DPL
Sbjct: 144 GNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPL 185
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 127/170 (74%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G TMRKTA K KPVSSGS WYGPDRVKYL P SG AP YLTGEFPGDYG
Sbjct: 21 SPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C KAG+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLG V DPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPL 190
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/170 (69%), Positives = 128/170 (75%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
+ + ++ G+G ITMRKTAGKPKP +SGS WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 18 ATSTRDVFGEGRITMRKTAGKPKPAASGSPWYGADRVLYLGPLSGQPPSYLTGEFPGDYG 77
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 78 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 137
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 138 SEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 187
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/164 (71%), Positives = 126/164 (76%), Gaps = 18/164 (10%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+HG+G ITMRKTA K SSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWDTA L
Sbjct: 30 VHGEGRITMRKTASKKVVASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGL 89
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFS+GGLD
Sbjct: 90 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSDGGLD 149
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGE+TDP+
Sbjct: 150 YLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPI 193
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/168 (70%), Positives = 126/168 (75%), Gaps = 18/168 (10%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++S + G G TMRKT KPK VSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWD
Sbjct: 8 SSSGVSGDGRFTMRKTVAKPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 67
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIFSE
Sbjct: 68 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 127
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 128 GGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEVVDPL 175
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/166 (70%), Positives = 126/166 (75%), Gaps = 18/166 (10%)
Query: 5 SEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
S + G+ +TMRKTA KPKP +SGS WYGPDRV YL PLSG P YLTGEFPGDYGWDTA
Sbjct: 18 SSLFGEARVTMRKTAAKPKPAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTA 77
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGG 106
LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGG
Sbjct: 78 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG 137
Query: 107 LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 138 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 183
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/168 (70%), Positives = 127/168 (75%), Gaps = 21/168 (12%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++SEI G G ++MRKT KPV SGS WYGPDRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 23 SSSEIMGNGRVSMRKTT---KPVPSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWD 79
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSE
Sbjct: 80 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSE 139
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 140 GGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPI 187
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/168 (70%), Positives = 127/168 (75%), Gaps = 21/168 (12%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++SEI G G ++MRKT KPV SGS WYGPDRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 23 SSSEIMGNGRVSMRKTT---KPVPSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWD 79
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSE
Sbjct: 80 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSE 139
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 140 GGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPI 187
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/162 (72%), Positives = 124/162 (76%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+G ITMRKT GKPK +SGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 24 GEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 83
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 84 DPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYL 143
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 144 GNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 185
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/168 (69%), Positives = 127/168 (75%), Gaps = 18/168 (10%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
+AS++ G+G +TMRKT G+ KPVSSGS WYG DRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 23 SASDLLGEGRVTMRKTGGRAKPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGDYGWD 82
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSE
Sbjct: 83 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 142
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NP+L+HAQSILA+WA QVILMGAV GY GGPLGEV DPL
Sbjct: 143 GGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRIGGGPLGEVVDPL 190
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/165 (70%), Positives = 125/165 (75%), Gaps = 18/165 (10%)
Query: 6 EIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
++ G+G ITMRKTA KPKP +SGS WYG DRV YL PLSG P YLTGEFPGDYGWDTA
Sbjct: 23 DVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAG 82
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIFSEGGL
Sbjct: 83 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGL 142
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 143 DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 187
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/170 (68%), Positives = 127/170 (74%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G +TMRKTA K KPVSS S WYGP+RVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FK G+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
S+GGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AG PLGEV DPL
Sbjct: 141 SQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPL 190
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/165 (70%), Positives = 125/165 (75%), Gaps = 18/165 (10%)
Query: 6 EIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
++ G+G ITMRKTA KPKP +SGS WYG DRV YL PLSG P YLTGEFPGDYGWDTA
Sbjct: 23 DVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAG 82
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIFSEGGL
Sbjct: 83 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGL 142
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 143 DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 187
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 228 bits (581), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 118/168 (70%), Positives = 127/168 (75%), Gaps = 19/168 (11%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++SE+ G G I+MRKT KP SSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWD
Sbjct: 23 SSSELFGSGRISMRKTGKKPA-ASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 81
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSE
Sbjct: 82 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 141
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 142 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 189
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 228 bits (581), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 116/165 (70%), Positives = 125/165 (75%), Gaps = 18/165 (10%)
Query: 6 EIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
++ G+G ITMRKTA KPKP +SGS WYG DRV YL PLSG P YLTGEFPGDYGWDTA
Sbjct: 18 DVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAG 77
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIFSEGGL
Sbjct: 78 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGL 137
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 138 DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 182
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 228 bits (580), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/168 (72%), Positives = 127/168 (75%), Gaps = 19/168 (11%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
+AS + G+G +TMRK GKP SSGS WYGPDRVKYL PLSG P YLTGEFPGDYGWD
Sbjct: 22 SASGVLGQGRVTMRKAGGKPA-ASSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWD 80
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSE
Sbjct: 81 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 140
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 141 GGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPL 188
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 228 bits (580), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 119/169 (70%), Positives = 128/169 (75%), Gaps = 19/169 (11%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGW 61
+AS++ G+G +TMRK+ K KP + SGS WYGPDRVKYL P SG P YLTGEFPGDYGW
Sbjct: 22 SASDVLGEGRVTMRKSTAKAKPAAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGW 81
Query: 62 DTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFS 103
DTA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFS
Sbjct: 82 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFS 141
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
EGGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 142 EGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPL 190
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 228 bits (580), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 117/168 (69%), Positives = 127/168 (75%), Gaps = 18/168 (10%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
+AS++ G+G +TMRKT G+ KPVSSGS WYG DRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 21 SASDLLGEGRVTMRKTGGRAKPVSSGSPWYGTDRVKYLGPFSGEPPSYLTGEFPGDYGWD 80
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSE
Sbjct: 81 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 140
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NP+L+HAQSILA+WA QVILMGAV GY GGPLGEV DPL
Sbjct: 141 GGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRIGGGPLGEVVDPL 188
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/170 (68%), Positives = 128/170 (75%), Gaps = 21/170 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++ E+ G G ++MRKT KPVSSGS WYGPDRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPSSPELMGNGRVSMRKTT---KPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYG 77
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIF
Sbjct: 78 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIF 137
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGE+TDP+
Sbjct: 138 SEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEITDPI 187
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/166 (70%), Positives = 124/166 (74%), Gaps = 18/166 (10%)
Query: 5 SEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
SE+ G G ++MRKTA K SGS WYGPDRVKYL P SG AP YLTGEFPGDYGWDTA
Sbjct: 12 SELLGNGRVSMRKTAAPKKVAPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTA 71
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGG 106
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGG
Sbjct: 72 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 131
Query: 107 LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 132 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 177
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/170 (69%), Positives = 126/170 (74%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ASE G+G ITMRK AGK K + S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPTASETLGEGRITMRKAAGKSKVATIDSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGA+ GY AGGPLGEVTDPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPL 190
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 127/170 (74%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +ASEI G G ++MRKT KP V+S S WYGPDRVKYL P SG AP YLTGEFPGDYG
Sbjct: 21 SPSASEITGNGRVSMRKTVAKP--VASSSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPL 188
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/170 (68%), Positives = 126/170 (74%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
+ + ++ G+G ITMRKTA KPKP +SGS WYG DRV YL P SG P YLTGEFPGDYG
Sbjct: 19 TTSTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPFSGEPPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 188
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/169 (71%), Positives = 125/169 (73%), Gaps = 19/169 (11%)
Query: 2 LAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGW 61
L A+ G +TMRKTAGKP SSGS WYGPDRVKYL P SG P YLTGEFPGDYGW
Sbjct: 23 LPATVRSSNGRVTMRKTAGKPA-ASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGW 81
Query: 62 DTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFS 103
DTA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFS
Sbjct: 82 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFS 141
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
EGGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEVTDPL
Sbjct: 142 EGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPL 190
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/158 (72%), Positives = 122/158 (77%), Gaps = 18/158 (11%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
++MRKTA KPKP +SGS WYGPDRVKYL P SG AP YLTGEF GDYGWDTA LSADPE
Sbjct: 1 VSMRKTAAKPKPAASGSPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPET 60
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIHARWAMLG L C FKAG+QIFSEGGLDYL NPS
Sbjct: 61 FAKNRELEVIHARWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 120
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 121 LVHAQSILAIWATQVILMGAVEGYRVAGGPLGEVVDPL 158
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/162 (71%), Positives = 124/162 (76%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+G ITMRKT GKPK +SGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 24 GEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 83
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DP+ FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 84 DPKTFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYL 143
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 144 GNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 185
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/168 (70%), Positives = 127/168 (75%), Gaps = 19/168 (11%)
Query: 4 ASEIHGKGCITMRKTAGKPKPV-SSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
+S + G+ ITMRKTA KPKP SSGS WYG DRV YL PLSG P YLTGEFPGDYGWD
Sbjct: 21 SSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWD 80
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSE
Sbjct: 81 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 140
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSILA+WA+QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 GGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 127/170 (74%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +ASEI G G ++MRKTA KP VSS S WYGPDRVKYL P SG +P YLT EFPGDYG
Sbjct: 21 SPSASEITGNGRVSMRKTAAKP--VSSSSPWYGPDRVKYLGPFSGESPSYLTSEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPL 188
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 127/170 (74%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +ASEI G G ++MRKT KP V+S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSASEITGNGRVSMRKTVAKP--VASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPL 188
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/170 (67%), Positives = 128/170 (75%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
+L +S + G+ +TMRKTA K KPVSSGS WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 20 NLPSSALFGEARVTMRKTAAKAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL++IH+RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 189
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/170 (69%), Positives = 126/170 (74%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SEI G G TMRKTA K KPVSSGS WYGPDRVKYL P SG AP YLTGE PGDYG
Sbjct: 21 SPSSSEITGNGRFTMRKTAAKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEKPGDYG 80
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWA+L L C FK G+QIF
Sbjct: 81 WDTAGLSADPETFAKNRELEVIHCRWAILERLGCVFPELLSRNGVKFGEAVWFKVGSQIF 140
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 190
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/170 (68%), Positives = 126/170 (74%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
+ + ++ G+G ITMRKTA KPKP +SGS WYG DRV YL P SG P YLTGEFPGDYG
Sbjct: 20 TTSTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPFSGEPPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 140 SEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 189
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/169 (68%), Positives = 126/169 (74%), Gaps = 18/169 (10%)
Query: 2 LAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGW 61
L +S + G+ +TMRKTA K KPVSSGS WYG DRV YL PLSG P YLTGEFPGDYGW
Sbjct: 42 LPSSALFGEARVTMRKTAAKAKPVSSGSPWYGSDRVLYLGPLSGDPPSYLTGEFPGDYGW 101
Query: 62 DTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFS 103
DTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIFS
Sbjct: 102 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFS 161
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
EGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 162 EGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 210
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/169 (68%), Positives = 126/169 (74%), Gaps = 18/169 (10%)
Query: 2 LAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGW 61
L +S + G+ +TMRKTA K KPVSSGS WYG DRV YL PLSG P YLTGEFPGDYGW
Sbjct: 21 LPSSALFGEARVTMRKTAAKAKPVSSGSPWYGSDRVLYLGPLSGDPPSYLTGEFPGDYGW 80
Query: 62 DTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFS 103
DTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIFS
Sbjct: 81 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFS 140
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
EGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 141 EGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 189
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/168 (68%), Positives = 124/168 (73%), Gaps = 18/168 (10%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++SEI G +TMRKT K KPVSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWD
Sbjct: 22 SSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 81
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADP FAKNR+L+VIH RW MLG L C FKAG+QIF E
Sbjct: 82 TAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKE 141
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 142 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPL 189
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 125/170 (73%), Gaps = 21/170 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S A E+ G G ++MR+TA KP SGS WYGPDRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPAPRELMGNGRVSMRRTA---KPTPSGSPWYGPDRVKYLSPFSGEPPSYLTGEFPGDYG 77
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIF
Sbjct: 78 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIF 137
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 138 SEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPL 187
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/161 (71%), Positives = 122/161 (75%), Gaps = 18/161 (11%)
Query: 10 KGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSAD 69
+G +TMRK+ K K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSAD
Sbjct: 33 QGRVTMRKSVAKSKAVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 92
Query: 70 PEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLE 111
PE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 93 PETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLG 152
Query: 112 NPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+L+HAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 153 NPNLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPL 193
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/168 (69%), Positives = 127/168 (75%), Gaps = 19/168 (11%)
Query: 4 ASEIHGKGCITMRKTAGKPKPV-SSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
+S + G+ ITMRKTA KPKP SSGS WYG DRV YL PLSG P YLTGEFPGDYGWD
Sbjct: 21 SSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWD 80
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL++IH+RWAMLG L C FKAG+QIFSE
Sbjct: 81 TAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 140
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSILA+WA+QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 GGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/167 (71%), Positives = 125/167 (74%), Gaps = 21/167 (12%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
ASE+ G G I+MRKT K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDT
Sbjct: 24 ASELMGNGRISMRKTG---KSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 80
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEG
Sbjct: 81 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 140
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDPL
Sbjct: 141 GLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPL 187
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 225 bits (573), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 118/170 (69%), Positives = 125/170 (73%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S A EI G TMRKTA K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPTAPEIQGNAKFTMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 139 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI 188
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 225 bits (573), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 118/170 (69%), Positives = 127/170 (74%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +A E+ G G ++MRKTA K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPSAPELMGNGRVSMRKTAAKN--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 139 SEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRVAGGPLGEVTDPI 188
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/167 (70%), Positives = 124/167 (74%), Gaps = 20/167 (11%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
A EI G TMRKTA K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDT
Sbjct: 24 APEIQGNAKFTMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 81
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 82 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 141
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 142 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI 188
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 116/170 (68%), Positives = 126/170 (74%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
+L +S + G+ +TMRKTA K KPV SGS WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 20 NLPSSALFGEARVTMRKTAAKAKPVPSGSPWYGADRVLYLGPLSGQPPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 189
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 115/169 (68%), Positives = 125/169 (73%), Gaps = 18/169 (10%)
Query: 2 LAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGW 61
L +S + G+ +TMRKTA K KPVSS S WYG DRV YL PLSG P YLTGEFPGDYGW
Sbjct: 21 LPSSALFGEARVTMRKTAAKAKPVSSSSPWYGSDRVLYLGPLSGDPPSYLTGEFPGDYGW 80
Query: 62 DTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFS 103
DTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIFS
Sbjct: 81 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFS 140
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
EGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 141 EGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 189
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/167 (70%), Positives = 124/167 (74%), Gaps = 20/167 (11%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
A EI G TMRKTA K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDT
Sbjct: 24 APEIQGNAKFTMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 81
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 82 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 141
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 142 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI 188
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 118/170 (69%), Positives = 127/170 (74%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +A E+ G G ++MRKTA K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPSAPELMGNGRVSMRKTAAKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 139 SEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI 188
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 125/170 (73%), Gaps = 21/170 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +A E+ G G + MRKT KP SGS WYGPDRVKYL PLSG P YLTGEFPGDYG
Sbjct: 21 SPSAPELMGNGRVNMRKTFNKP---PSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYG 77
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIF
Sbjct: 78 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIF 137
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 138 SEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPL 187
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/170 (68%), Positives = 126/170 (74%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +A EI G G ++MRKT KP V+S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSAPEITGNGRVSMRKTVAKP--VASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPL 188
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/168 (69%), Positives = 126/168 (75%), Gaps = 20/168 (11%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
+A + G ++MRK+ GKP VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 23 SAPGLMGNARVSMRKSVGKP--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWD 80
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSE
Sbjct: 81 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 140
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSILA+WA+QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 141 GGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVTDPI 188
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/167 (70%), Positives = 124/167 (74%), Gaps = 20/167 (11%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
A EI G TMRKTA K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDT
Sbjct: 14 APEIQGNAKFTMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 71
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 72 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 131
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 132 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI 178
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/170 (70%), Positives = 130/170 (76%), Gaps = 20/170 (11%)
Query: 3 AASEIHGKGCITMRKTAGKPKPV-SSGSQWYGPDRVKYLDPLSGGAP-FYLTGEFPGDYG 60
AA+++ G+G ITMRK+A KPKP SSGS WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 17 AAAKVFGEGRITMRKSAAKPKPAASSGSPWYGADRVLYLGPLSGREPPSYLTGEFPGDYG 76
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 77 WDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPELLARNGVKFGEAVWFKAGSQIF 136
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA+QV+LMGAV GY AGGPLGEV DPL
Sbjct: 137 SEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPL 186
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/170 (67%), Positives = 127/170 (74%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
++A+S + G+ +TMRKTA K K VSSGS WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 19 NVASSALFGEARVTMRKTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
S+GGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 SDGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/170 (68%), Positives = 126/170 (74%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +A EI G G ++MRKT KP V+S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSAPEITGNGRVSMRKTVAKP--VASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
S+GGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 139 SDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPL 188
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/170 (68%), Positives = 124/170 (72%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +ASEI G G ITMRK K P S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSASEISGNGRITMRKAVAKSAP--SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCDFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/170 (68%), Positives = 124/170 (72%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +ASEI G G ITMRK K P S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSASEISGNGRITMRKAVAKSAP--SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEVVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/170 (68%), Positives = 124/170 (72%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +ASEI G G ITMRK K P S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSASEISGNGRITMRKAVAKSAP--SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/170 (68%), Positives = 124/170 (72%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +ASEI G G ITMRK K P S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSASEISGNGRITMRKAVAKSAP--SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/170 (68%), Positives = 124/170 (72%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +ASEI G G ITMRK K P S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSASEISGNGRITMRKAVAKSAP--SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/170 (69%), Positives = 125/170 (73%), Gaps = 21/170 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S + EI G G ++MRKT KPV SGS WYGPDRV YL PLSG P YLTGEFPGDYG
Sbjct: 21 SPSTPEIQGTGRVSMRKTT---KPVPSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYG 77
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 78 WDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 137
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 138 SEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPL 187
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/170 (69%), Positives = 125/170 (73%), Gaps = 21/170 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S + EI G G ++MRKT KPV SGS WYGPDRV YL PLSG P YLTGEFPGDYG
Sbjct: 21 SPSTPEIQGTGRVSMRKTT---KPVPSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYG 77
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 78 WDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 137
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 138 SEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPL 187
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/168 (70%), Positives = 125/168 (74%), Gaps = 20/168 (11%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
AASE+ G G I+MRKT KP VSSGS WYG DRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 23 AASELLGNGRISMRKTIAKP--VSSGSPWYGADRVKYLGPFSGEPPSYLTGEFPGDYGWD 80
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFS+
Sbjct: 81 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSD 140
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL N SL+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDPL
Sbjct: 141 GGLDYLGNSSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPL 188
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/168 (68%), Positives = 126/168 (75%), Gaps = 20/168 (11%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++ E+ G +TMRK+A K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 23 SSPELFGNSRVTMRKSA--TKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWD 80
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSE
Sbjct: 81 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSE 140
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 141 GGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPI 188
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 122/162 (75%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+G ITMRKTAGKPK +S S WYG DRV YL PLSG P YLTGEFPGDYGWDTA LSA
Sbjct: 28 GEGRITMRKTAGKPKVAASSSPWYGSDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSA 87
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 88 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 147
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 148 GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 189
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/162 (71%), Positives = 123/162 (75%), Gaps = 20/162 (12%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ++MRKTA K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 28 GVGRVSMRKTASKT--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 85
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 86 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 145
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 146 GNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 187
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/162 (71%), Positives = 123/162 (75%), Gaps = 20/162 (12%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ++MRKTA K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 28 GVGRVSMRKTASKT--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 85
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 86 DPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYL 145
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 146 GNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 187
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/169 (69%), Positives = 127/169 (75%), Gaps = 20/169 (11%)
Query: 4 ASEIHGKGCITMRKTAGKPKPV-SSGSQWYGPDRVKYLDPLSGGAP-FYLTGEFPGDYGW 61
+S + G+ ITMRKTA KPKP SSGS WYG DRV YL PLSG P YLTGEFPGDYGW
Sbjct: 21 SSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGREPPSYLTGEFPGDYGW 80
Query: 62 DTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFS 103
DTA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFS
Sbjct: 81 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFS 140
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
EGGLDYL NPSLIHAQSILA+WA+QV+LMGAV GY AGGPLGEV DPL
Sbjct: 141 EGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPL 189
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/170 (67%), Positives = 126/170 (74%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
+L +S + G+ +TMRKTA K K V+SGS WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 20 NLPSSSLFGEARVTMRKTAAKVKQVASGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPL 189
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/170 (67%), Positives = 127/170 (74%), Gaps = 19/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
++ +S + G+ +TMRKT KPK +SGS WYGPDRV YL PLSG P YLTGEFPGDYG
Sbjct: 20 NVPSSALFGEARVTMRKTGAKPK-ATSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVQFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 121/162 (74%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+ ITMRKT K KPVSSGS WYG DRV YL PLSG P YLTGEFPGDYGWDTA LSA
Sbjct: 25 GEARITMRKTVAKAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSA 84
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 85 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 144
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 145 GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 186
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/167 (68%), Positives = 123/167 (73%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+S+ G TMRK+A K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDT
Sbjct: 23 SSQELGASRFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 82
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 83 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 142
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDPL
Sbjct: 143 GLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPL 189
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 113/170 (66%), Positives = 126/170 (74%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
++ +S + G+ +TMRKTA K K VSSGS WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 20 NIPSSALFGEARVTMRKTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE F+KNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 189
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/170 (68%), Positives = 124/170 (72%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +ASEI G G ITMRK K P S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSASEISGNGRITMRKAVAKSAP--SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
S+GGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 SQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 122/162 (75%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+G ITMRKTA KPK +SGS WYG DRV YL PLSG P YLTGEFPGDYGWDTA LSA
Sbjct: 27 GEGRITMRKTAAKPKVSASGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 147 GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 188
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/170 (68%), Positives = 124/170 (72%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +ASEI G G ITMRK K P S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 5 SPSASEISGNGRITMRKAVAKSAP--SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 62
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 63 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 122
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 123 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 172
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 116/170 (68%), Positives = 126/170 (74%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ++SE+ G G ++MRKTA K SGS WYGPDRVKYL P SG AP YLTGEFPGDYG
Sbjct: 20 SPSSSELFGNGRVSMRKTAAAKKAAPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE F+KNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 189
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 115/162 (70%), Positives = 123/162 (75%), Gaps = 20/162 (12%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ++MRKTA K V+SGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 28 GVGRVSMRKTASKT--VTSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 85
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 86 DPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYL 145
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 146 GNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 187
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 122/162 (75%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+G ITMRKTA KPK +SGS WYG DRV YL PLSG P YLTGEFPGDYGWDTA LSA
Sbjct: 26 GEGRITMRKTAAKPKVSASGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSA 85
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 86 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 145
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 146 GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 187
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/156 (72%), Positives = 119/156 (76%), Gaps = 18/156 (11%)
Query: 15 MRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
MRKTA K KP SSGS WYGPDRVKYL P SG +P YLTGEFPGDYGWDTA LSADPE FA
Sbjct: 1 MRKTAAKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFA 60
Query: 75 KNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLI 116
KNREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL NPSL+
Sbjct: 61 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV 120
Query: 117 HAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 121 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 156
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 120/162 (74%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G TMRK+A K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 1 GASKFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 60
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 61 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 120
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA+QVILMGAV GY AGGPLGEV DPL
Sbjct: 121 GNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPL 162
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/168 (69%), Positives = 124/168 (73%), Gaps = 20/168 (11%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
+ +E+ G I+MRKT K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 22 SGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWD 79
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSE
Sbjct: 80 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 139
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEVTDPL
Sbjct: 140 GGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPL 187
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/160 (71%), Positives = 122/160 (76%), Gaps = 20/160 (12%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G I+MRK A K VSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWDTA LSADP
Sbjct: 30 GRISMRKAASKS--VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADP 87
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 88 ETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 147
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
PSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 148 PSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 187
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/170 (68%), Positives = 123/170 (72%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S + SEI G G ITMRK K P S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSTSEITGNGRITMRKAVAKSAP--SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVIDPL 188
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/160 (71%), Positives = 122/160 (76%), Gaps = 20/160 (12%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ++MRK+A + VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSADP
Sbjct: 30 GRVSMRKSASRN--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 88 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 147
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
PSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 148 PSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPL 187
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 120/162 (74%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G TMRK+A K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 1 GASKFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 60
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 61 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 120
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA+QVILMGAV GY AGGPLGEV DPL
Sbjct: 121 GNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPL 162
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/167 (68%), Positives = 122/167 (73%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+S+ G TMRK+A K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDT
Sbjct: 23 SSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 82
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 83 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 142
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 143 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 189
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 120/162 (74%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G TMRK+A K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 1 GASKFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 60
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 61 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 120
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA+QVILMGAV GY AGGPLGEV DPL
Sbjct: 121 GNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPL 162
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/170 (65%), Positives = 125/170 (73%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
++ +S + G+ +TMRKTA K K VSSGS WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 20 NIPSSALFGEARVTMRKTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE F+KNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPS +HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 140 SEGGLDYLGNPSFVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 189
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/167 (67%), Positives = 123/167 (73%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+S+ G TMRK+A K SSGS WYGPDRVKYL P SG +P YLTGEFPGDYGWDT
Sbjct: 23 SSQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDT 82
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE F+KNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 83 AGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 142
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 143 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 189
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 120/162 (74%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G TMRK+A K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 1 GASKFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 60
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 61 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 120
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA+QVILMGAV GY AGGPLGEV DPL
Sbjct: 121 GNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPL 162
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/167 (67%), Positives = 123/167 (73%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+S+ G TMRK+A K SSGS WYGPDRVKYL P SG +P YLTGEFPGDYGWDT
Sbjct: 25 SSQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDT 84
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE F+KNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 85 AGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 144
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 145 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 191
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 119/162 (73%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G TMRK A K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 1 GASKFTMRKAATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 60
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 61 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 120
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA+QVILMGAV GY AGGPLGEV DPL
Sbjct: 121 GNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPL 162
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/156 (72%), Positives = 119/156 (76%), Gaps = 18/156 (11%)
Query: 15 MRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
MRKT GKPK +SGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSADPE FA
Sbjct: 1 MRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 60
Query: 75 KNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLI 116
KNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL NPSLI
Sbjct: 61 KNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLI 120
Query: 117 HAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 121 HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 156
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/158 (71%), Positives = 119/158 (75%), Gaps = 18/158 (11%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
TMRK+A K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSADPE
Sbjct: 3 FTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 62
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 63 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 122
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA+QVILMGAV GY AGGPLGEV DPL
Sbjct: 123 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPL 160
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/168 (68%), Positives = 125/168 (74%), Gaps = 19/168 (11%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
+ASE+ G G ++MRK A K K SGS WYGPDRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 25 SASELMGNGRVSMRKAATK-KVAPSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWD 83
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSE
Sbjct: 84 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 143
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DP+
Sbjct: 144 GGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPI 191
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/167 (67%), Positives = 123/167 (73%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+S+ G TMRK+A K SSGS WYGPDRVKYL P SG +P YLTGEFPGDYGWDT
Sbjct: 23 SSQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDT 82
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE F+KNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 83 AGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 142
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 143 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 189
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/158 (71%), Positives = 119/158 (75%), Gaps = 18/158 (11%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
TMRK+A K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSADPE
Sbjct: 3 FTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 62
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 63 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 122
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA+QVILMGAV GY AGGPLGEV DPL
Sbjct: 123 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPL 160
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/168 (66%), Positives = 124/168 (73%), Gaps = 21/168 (12%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++SE+ G G ++MRKT P S S WYGPDRVKYL P SG AP YLTGEFPGDYGWD
Sbjct: 23 SSSELFGNGRVSMRKTVKAP---VSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 79
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSE
Sbjct: 80 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 139
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSL+HAQSIL++WA QVILMGAV GY AGGPLGE+ DPL
Sbjct: 140 GGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPL 187
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/167 (68%), Positives = 121/167 (72%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+S+ G TMRK A K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDT
Sbjct: 23 SSQELGAARFTMRKAATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 82
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 83 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 142
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 143 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 189
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/170 (67%), Positives = 126/170 (74%), Gaps = 19/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
++ +S + G +TMRKT KPK V+SGS WYGPDRV YL PLSG P YLTGEF GDYG
Sbjct: 20 NMPSSALFGDARMTMRKTGAKPK-VASGSPWYGPDRVLYLGPLSGEPPSYLTGEFAGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVQFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/162 (70%), Positives = 121/162 (74%), Gaps = 20/162 (12%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ++MRK AGK SGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 30 GNGRVSMRKAAGKV--ADSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 87
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 88 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 147
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEVTDPL
Sbjct: 148 GNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPL 189
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/167 (67%), Positives = 123/167 (73%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+S+ G TMRK+A K SSGS WYGPDRVKYL P SG +P YLTGEFPGDYGWDT
Sbjct: 26 SSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDT 85
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE F+KNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 86 AGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 145
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 146 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 192
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/170 (67%), Positives = 125/170 (73%), Gaps = 21/170 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +A E+ G G I+M++T +PVSSGS WYGPDRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPSAPELMGNGRISMKRTT---RPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYG 77
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAM G L C FKAG+QIF
Sbjct: 78 WDTAGLSADPETFAKNRELEVIHCRWAMPGALGCVFPELLSRNGVKFGEAVWFKAGSQIF 137
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
EGGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 138 QEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 187
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/162 (69%), Positives = 121/162 (74%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+ +TMRKTA K K VSSGS WYG DRV YL PLSG P YLTGEFPGDYGWDTA LSA
Sbjct: 28 GEARVTMRKTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSA 87
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE F+KNREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 88 DPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 147
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 148 GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 189
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/160 (71%), Positives = 122/160 (76%), Gaps = 20/160 (12%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G I+MRKTA K VSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWDTA LSADP
Sbjct: 30 GRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADP 87
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L FKAG+QIFSEGGLDYL N
Sbjct: 88 ETFARNRELEVIHSRWAMLGALGSVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 147
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
PSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 148 PSLIHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPI 187
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/170 (67%), Positives = 123/170 (72%), Gaps = 20/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +ASEI G G ITMRK K P S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSASEITGNGRITMRKAVAKSAP--SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
EGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV +PL
Sbjct: 139 REGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVNPL 188
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/155 (72%), Positives = 118/155 (76%), Gaps = 18/155 (11%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
RKTAGKPK V S S WYGPDRVKYL P SG +P YLTGEFPGDYGWDTA LSADPE FAK
Sbjct: 1 RKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAK 60
Query: 76 NRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIH 117
NREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL NPSL+H
Sbjct: 61 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 118 AQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
AQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 121 AQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 155
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/160 (71%), Positives = 122/160 (76%), Gaps = 20/160 (12%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ++MRK+A + VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSADP
Sbjct: 27 GRVSMRKSASRN--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 84
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 85 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGN 144
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
PSLIHAQSILA+WA QV+LMGAV GY AGGPLGEVTDPL
Sbjct: 145 PSLIHAQSILAIWATQVLLMGAVEGYRIAGGPLGEVTDPL 184
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/170 (65%), Positives = 125/170 (73%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
++ +S + G+ +TMRKT K K VSSGS WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 20 NVPSSALFGEARVTMRKTTAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE F+KNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
+EGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 140 NEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 189
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 122/162 (75%), Gaps = 20/162 (12%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ++MRKTA K V+SGS WYGPDRVKYL P SG P Y TGEFPGDYGWDTA LSA
Sbjct: 28 GVGRVSMRKTASKT--VTSGSPWYGPDRVKYLGPFSGEPPSYRTGEFPGDYGWDTAGLSA 85
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 86 DPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYL 145
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 146 GNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 187
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 114/166 (68%), Positives = 123/166 (74%), Gaps = 21/166 (12%)
Query: 5 SEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
+++ G G +TMRKT + VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWD A
Sbjct: 24 NDLMGNGRVTMRKTG---RQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDAA 80
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGG 106
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGG
Sbjct: 81 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 140
Query: 107 LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLG+VTDPL
Sbjct: 141 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGKVTDPL 186
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 114/167 (68%), Positives = 121/167 (72%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+S+ G TMRK A K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDT
Sbjct: 23 SSQELGVAKFTMRKGATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 82
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 83 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 142
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 143 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 189
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 113/167 (67%), Positives = 124/167 (74%), Gaps = 20/167 (11%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+S + G +TMRK+ GKP SSGS WYGPDRVKYL P SG P YL GEFPGDYGWDT
Sbjct: 24 SSSVRSNGRVTMRKS-GKPA-ASSGSPWYGPDRVKYLGPFSGEPPSYLKGEFPGDYGWDT 81
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 82 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 141
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGE+TDP+
Sbjct: 142 GLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPI 188
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 115/162 (70%), Positives = 122/162 (75%), Gaps = 20/162 (12%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ++MRKTA K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 9 GVGRVSMRKTASKT--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 66
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 67 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYL 126
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
N SLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 127 GNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 168
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 118/167 (70%), Positives = 123/167 (73%), Gaps = 21/167 (12%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
AS+I G G ++MRKT K SGS WYGPDRV YL PLSG P YLTGEFPGDYGWDT
Sbjct: 24 ASDILGGGRVSMRKTGFK---APSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDT 80
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEG
Sbjct: 81 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEG 140
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 141 GLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPL 187
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/167 (70%), Positives = 123/167 (73%), Gaps = 21/167 (12%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
AS+I G G ++MRKT K SGS WYGPDRV YL PLSG P YLTGEFPGDYGWDT
Sbjct: 24 ASQILGGGRVSMRKTGFK---APSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDT 80
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEG
Sbjct: 81 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEG 140
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 141 GLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPL 187
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/167 (70%), Positives = 123/167 (73%), Gaps = 21/167 (12%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
AS+I G G ++MRKT K SGS WYGPDRV YL PLSG P YLTGEFPGDYGWDT
Sbjct: 24 ASDILGGGRVSMRKTGFK---APSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYGWDT 80
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEG
Sbjct: 81 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEG 140
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 141 GLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPL 187
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/160 (71%), Positives = 121/160 (75%), Gaps = 20/160 (12%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ++MRKT K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSADP
Sbjct: 29 GRVSMRKTV--TKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 87 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
PSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 147 PSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 186
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 218 bits (554), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 114/160 (71%), Positives = 121/160 (75%), Gaps = 20/160 (12%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ++MRKT K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSADP
Sbjct: 29 GRVSMRKTV--TKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 87 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
PSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 147 PSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 186
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 218 bits (554), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 121/162 (74%), Gaps = 19/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G +TMRK K K V SGS WYGPDRVKYL P SG AP YLTGEFPGDYGWDTA LSA
Sbjct: 28 GVGRVTMRKATTK-KSVPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA+QVILMGAV GY AGGP GEV DPL
Sbjct: 147 GNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPPGEVVDPL 188
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/173 (66%), Positives = 126/173 (72%), Gaps = 28/173 (16%)
Query: 7 IHGKGCITM---------RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPG 57
I G+G ITM R TAGK +P +S S WYGPDRVKYL P SG P YLTGEFPG
Sbjct: 29 IFGEGRITMQDKTTSNRPRTTAGKLRPATS-SPWYGPDRVKYLGPFSGEPPSYLTGEFPG 87
Query: 58 DYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGA 99
DYGWDTA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+
Sbjct: 88 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARNGVKFGEAVWFKAGS 147
Query: 100 QIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
QIFSEGGLDYL NP+LIHAQSILA+WA+QV+LMGAV GY AGGPLGE+TDPL
Sbjct: 148 QIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEITDPL 200
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/170 (65%), Positives = 124/170 (72%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
+++ S + G+ +TMRKT K K V+S S WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 20 NVSLSALFGEARVTMRKTTAKAKQVASSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPL 189
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/160 (70%), Positives = 121/160 (75%), Gaps = 20/160 (12%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ++MRKT K SSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWDTA LSADP
Sbjct: 29 GRVSMRKTV--TKQASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 87 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
PSL+HAQSILA+WA QVILMGAV GY AGGPLGE+TDP+
Sbjct: 147 PSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEITDPI 186
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/170 (67%), Positives = 126/170 (74%), Gaps = 19/170 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
++ +S + G+ +TMRKT KPK +SGS WYGPDRV YL PLSG P YLTGEF GDYG
Sbjct: 20 NVPSSGLFGEARMTMRKTGAKPK-AASGSPWYGPDRVLYLGPLSGEPPSYLTGEFAGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 SEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/162 (70%), Positives = 122/162 (75%), Gaps = 20/162 (12%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ++MRKTA K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSA
Sbjct: 9 GVGRVSMRKTASKT--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 66
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 67 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEACWFKAGSQIFSEGGLDYL 126
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
N SLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 127 GNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 168
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/151 (73%), Positives = 117/151 (77%), Gaps = 18/151 (11%)
Query: 20 GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
GKPKPVSS S WYGPDRVKYL P SG +P YLTGEFPGDYGWDTA LSADPE FAKNREL
Sbjct: 2 GKPKPVSSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 61
Query: 80 KVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSI 121
+VIH+RWAMLG L C FKAG+QIFSEGGLDYL NPSL+HAQSI
Sbjct: 62 EVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI 121
Query: 122 LAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 122 LAIWACQVILMGAVEGYRVAGGPLGEVVDPL 152
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/156 (71%), Positives = 119/156 (76%), Gaps = 18/156 (11%)
Query: 15 MRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
MRKTA K KPVSSGS WYG DRV YL PLSG P YLTGEFPGDYGWDTA LSADPE FA
Sbjct: 1 MRKTAAKAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 60
Query: 75 KNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLI 116
KNREL++IH+RWAMLG L C FKAG+QIFSEGGLDYL NPSL+
Sbjct: 61 KNRELELIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLV 120
Query: 117 HAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 121 HAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 156
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/166 (66%), Positives = 122/166 (73%), Gaps = 18/166 (10%)
Query: 5 SEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
S + G+ +TMRKTA K K +SS + WYG DRV YL PLSG P YLTGEFPGDYGWDTA
Sbjct: 24 SALFGEARVTMRKTAAKAKQLSSSNPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTA 83
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGG 106
LSADPE F+KNREL+VIH RWAMLG L C FKAG+QIFSEGG
Sbjct: 84 GLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG 143
Query: 107 LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 144 LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 189
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/165 (69%), Positives = 122/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK A K VS S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 33 VHGEARVTMRKAATKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 92
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGL
Sbjct: 93 LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 152
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 153 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 197
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/156 (73%), Positives = 118/156 (75%), Gaps = 19/156 (12%)
Query: 15 MRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
MRKT KPK VSS S WYGPDRVKYL P SG AP YL+GEFPGDYGWDTA LSADPE FA
Sbjct: 1 MRKTVAKPKTVSS-SPWYGPDRVKYLGPFSGEAPSYLSGEFPGDYGWDTAGLSADPETFA 59
Query: 75 KNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLI 116
KNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL NPSL+
Sbjct: 60 KNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLV 119
Query: 117 HAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 120 HAQSILAIWATQVILMGAVEGYRIAGGPLGEVEDPL 155
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/162 (69%), Positives = 121/162 (74%), Gaps = 18/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+ +TMRKTA K K VSSGS WYG DRV YL PLSG P YLTGEFPGDYGWDTA LSA
Sbjct: 28 GEARVTMRKTAVKAKQVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSA 87
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 88 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 147
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+L+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 148 GNPNLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPL 189
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/164 (68%), Positives = 121/164 (73%), Gaps = 18/164 (10%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+HG+ +TMRK+A K S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 30 VHGESRVTMRKSATKKFASESPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGL 89
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLD
Sbjct: 90 SADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLD 149
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 150 YLGNPSLIHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPI 193
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/170 (65%), Positives = 123/170 (72%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
+L +S + G + MRKTA K K VSS S WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 20 NLPSSALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
S+GGLDYL NPSL+HAQS+LA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 140 SDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPL 189
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/170 (64%), Positives = 123/170 (72%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
+++ S + G+ +TMRKT K K V+S S WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 20 NVSLSALFGEARVTMRKTTAKAKQVASSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA Q +LMGAV GY AGGPLGE+ DPL
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWACQAVLMGAVEGYRIAGGPLGEIVDPL 189
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/165 (69%), Positives = 122/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK+A K VS S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 27 VHGESRVTMRKSATKKSVVSASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 86
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 87 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 146
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 147 DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 191
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/165 (69%), Positives = 122/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK+A K VS S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 VHGESRVTMRKSATKKSVVSASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 150 DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 194
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 110/168 (65%), Positives = 121/168 (72%), Gaps = 21/168 (12%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++SE+ G ++MRKTA K GS WYGPDRVKYL P SG +P YLTGEFPGDYGWD
Sbjct: 23 SSSEVQGDARVSMRKTAATKK---VGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 79
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH RWAMLG L C FK G+QIFSE
Sbjct: 80 TAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSE 139
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGL YL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 140 GGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPL 187
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/165 (69%), Positives = 121/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK A K VS S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 VHGEARVTMRKAATKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 150 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 194
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/165 (69%), Positives = 122/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK+A K S S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 VHGESRVTMRKSAAKKSFASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 150 DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 194
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 115/160 (71%), Positives = 121/160 (75%), Gaps = 19/160 (11%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMRKT K SGSQWYGPDRVKYL P SG AP YLTGEFPGDYGWDTA LSADP
Sbjct: 30 GRITMRKTTTKKT-APSGSQWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADP 88
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 89 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 148
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
PSL+HAQSILA+WA+QVILMGAV GY AGGPLGEV DPL
Sbjct: 149 PSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPL 188
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 113/165 (68%), Positives = 121/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK K VS S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 33 VHGEARVTMRKATTKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 92
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGL
Sbjct: 93 LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 152
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 153 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 197
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 113/167 (67%), Positives = 121/167 (72%), Gaps = 22/167 (13%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+S++ G G I+MRK+ KP SGS WYGPDRVKYL P SG P YLTGEFPGDYGWDT
Sbjct: 24 SSKVRGDGRISMRKSFAKP----SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 79
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEG
Sbjct: 80 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEG 139
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NP L+HAQSILA+WA QVILMGAV GY GGPLGEV DPL
Sbjct: 140 GLDYLGNPGLVHAQSILAIWACQVILMGAVEGYRIGGGPLGEVIDPL 186
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 110/166 (66%), Positives = 121/166 (72%), Gaps = 18/166 (10%)
Query: 5 SEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
S + G+ +TMRKTA K K VSS S WYG DRV YL PLS P YLTG+FPGDYGWDTA
Sbjct: 24 SALFGEARVTMRKTAAKAKQVSSSSPWYGADRVLYLGPLSREPPSYLTGDFPGDYGWDTA 83
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGG 106
LSADPE F+KNREL+VIH RWAMLG L C FKAG+QIFSEGG
Sbjct: 84 GLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG 143
Query: 107 LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 144 LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 189
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 111/160 (69%), Positives = 120/160 (75%), Gaps = 20/160 (12%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ++MRKT K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSADP
Sbjct: 29 GRVSMRKTV--TKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 87 ETFARNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
PSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 147 PSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 186
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 115/171 (67%), Positives = 125/171 (73%), Gaps = 20/171 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G +TMRKT KPK SGS WYG DRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
S+GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 140 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLL 190
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/171 (67%), Positives = 125/171 (73%), Gaps = 20/171 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G +TMRKT KPK SGS WYG DRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
S+GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 140 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLL 190
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 121/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRK-TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK T K +S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 35 VHGEARVTMRKATTKKVSASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 94
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGL
Sbjct: 95 LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 154
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 155 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 199
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 120/166 (72%), Gaps = 18/166 (10%)
Query: 5 SEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
S + G+ +TMRKT K K VSS S WYG DRV YL PLSG P YLTGEFPGDYGWDTA
Sbjct: 24 STLFGEARVTMRKTTAKAKQVSSSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTA 83
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGG 106
LSADPE FAKNREL+VIH RWAMLG L FKAG+QIFSEGG
Sbjct: 84 GLSADPETFAKNRELEVIHCRWAMLGALGSIFPELLARNGVKFGEAVWFKAGSQIFSEGG 143
Query: 107 LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 144 LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPL 189
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/165 (69%), Positives = 121/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
IHG+ +TMRK+A K S S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 IHGESRVTMRKSATKKSFASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 150 DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 194
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/165 (67%), Positives = 122/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK++ K S S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 33 VHGEARVTMRKSSTKKVSASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 92
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGL
Sbjct: 93 LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 152
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGE+TDP+
Sbjct: 153 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPI 197
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/165 (69%), Positives = 121/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK+A K S S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 VHGESRVTMRKSATKKSVASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 150 DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 194
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 122/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK++ K S S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 33 VHGEARVTMRKSSTKKVSASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 92
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGL
Sbjct: 93 LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 152
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGE+TDP+
Sbjct: 153 DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPI 197
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/165 (69%), Positives = 121/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK+A K S S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 35 VHGESRVTMRKSATKKSFASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 94
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 95 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 154
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 155 DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 199
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/165 (69%), Positives = 121/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK+A K S S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 VHGESRVTMRKSATKKSVASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 150 DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 194
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/160 (69%), Positives = 119/160 (74%), Gaps = 20/160 (12%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ++MRKT K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSADP
Sbjct: 28 GRVSMRKTV--TKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 85
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAG+ IFSEGGLDYL N
Sbjct: 86 ETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSLIFSEGGLDYLGN 145
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
PSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 146 PSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 185
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/165 (68%), Positives = 120/165 (72%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK K VS S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 VHGEARVTMRKATTKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 150 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 194
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/171 (67%), Positives = 125/171 (73%), Gaps = 20/171 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G +TMRKT KPK SGS WYG DRVKYL P SG +P YLTGEFPGDYG
Sbjct: 3 SPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYG 61
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 62 WDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 121
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
S+GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 122 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLL 172
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/165 (67%), Positives = 122/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK++ K S S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 VHGEARVTMRKSSTKKVSASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGE+TDP+
Sbjct: 150 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPI 194
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/165 (68%), Positives = 122/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK+A K S S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 VHGESRVTMRKSAAKKSFASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
D+L NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 150 DHLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 194
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/155 (70%), Positives = 117/155 (75%), Gaps = 18/155 (11%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
RK+A K SSGS WYGPDRVKYL P SG +P YLTGEFPGDYGWDTA LSADPE F+K
Sbjct: 1 RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSK 60
Query: 76 NRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIH 117
NREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL NPSL+H
Sbjct: 61 NRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 118 AQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
AQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 121 AQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 155
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/171 (67%), Positives = 124/171 (72%), Gaps = 20/171 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G +TMRKT KPK SGS WYG DRVKYL P SG P YLTGEFPGDYG
Sbjct: 16 SPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYG 74
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 75 WDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 134
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
S+GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 135 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLL 185
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/171 (67%), Positives = 124/171 (72%), Gaps = 20/171 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G +TMRKT KPK SGS WYG DRVKYL P SG P YLTGEFPGDYG
Sbjct: 16 SPAASEVLGSGRVTMRKTTAKPKG-PSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYG 74
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 75 WDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 134
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
S+GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 135 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLL 185
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 120/165 (72%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRK-TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK T K +S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 35 VHGEARVTMRKATTKKVSASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 94
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 95 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 154
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 155 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 199
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/170 (65%), Positives = 121/170 (71%), Gaps = 18/170 (10%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
+L +S + G + MRKTA K K VSS S WYG DRV YL LSG P YLTGEFPGDYG
Sbjct: 15 NLPSSALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGSLSGEPPSYLTGEFPGDYG 74
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C F AG+QIF
Sbjct: 75 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFMAGSQIF 134
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 135 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPL 184
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/166 (67%), Positives = 121/166 (72%), Gaps = 20/166 (12%)
Query: 7 IHGKGCITMRK--TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
+HG+ +TMRK T K +S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 33 VHGEARVTMRKSSTTKKVSASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTA 92
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGG 106
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGG
Sbjct: 93 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 152
Query: 107 LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGE+TDP+
Sbjct: 153 LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPI 198
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 120/165 (72%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRK-TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK T K +S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 33 VHGEARVTMRKATTKKVSASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 92
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 93 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 152
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 153 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 197
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/158 (69%), Positives = 118/158 (74%), Gaps = 19/158 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
I MRKT GK V GS WYGPDRVKYL P SG +P YLTGE+PGDYGWDTA LSADPE
Sbjct: 39 IAMRKT-GKASSVGGGSPWYGPDRVKYLGPFSGESPSYLTGEYPGDYGWDTAGLSADPET 97
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+RWAMLG L C FKAG+QIF EGGLDYL NPS
Sbjct: 98 FAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKFGEAVWFKAGSQIFKEGGLDYLGNPS 157
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 158 LVHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPI 195
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 120/165 (72%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRK-TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK T K +S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 14 VHGEARVTMRKATTKKVSASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 73
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 74 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 133
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 134 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 178
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/171 (66%), Positives = 124/171 (72%), Gaps = 20/171 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G +TMRKT KPK SGS WYG DRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGG-PLGEVTDPL 152
S+GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG PLGE D L
Sbjct: 140 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNEPLGEAEDLL 190
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 120/165 (72%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRK-TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK T K +S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 33 VHGEARVTMRKATTKKVSASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 92
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 93 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 152
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 153 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 197
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/165 (66%), Positives = 122/165 (73%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK++ K S S S WYGPDRV YL P SG P +LTGEFPGDYGWDTA
Sbjct: 33 VHGEARVTMRKSSTKKVSASASTSPWYGPDRVLYLGPFSGEPPSHLTGEFPGDYGWDTAG 92
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGL
Sbjct: 93 LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 152
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGE+TDP+
Sbjct: 153 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPI 197
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 120/165 (72%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRK-TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK T K +S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 VHGEARVTMRKATTKKVSASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 150 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 194
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/162 (67%), Positives = 119/162 (73%), Gaps = 18/162 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
+ + ++ G+G ITMRKTAGKPKP +SGS WYG DRV YL PLSG P YLTGEFPGDYG
Sbjct: 18 ATSTRDVFGEGRITMRKTAGKPKPAASGSPWYGADRVLYLGPLSGQPPSYLTGEFPGDYG 77
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 78 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 137
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGP 144
SEGGLDYL NPSLIHAQSILA+WA QV+LMGAV GY A P
Sbjct: 138 SEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIADDP 179
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 112/159 (70%), Positives = 118/159 (74%), Gaps = 20/159 (12%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G +MRKT K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSADP
Sbjct: 29 GRASMRKTVTKQ--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L FKAG+QIFSEGGLDYL N
Sbjct: 87 ETFARNRELEVIHSRWAMLGALGIVFPEPLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDP 151
PSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP
Sbjct: 147 PSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP 185
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 108/158 (68%), Positives = 118/158 (74%), Gaps = 19/158 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+ MRKT G+ V GS WYGPDRVKYL P SG +P YLTGE+PGDYGWDTA LSADPE
Sbjct: 30 VAMRKT-GRASSVGGGSPWYGPDRVKYLGPFSGESPSYLTGEYPGDYGWDTAGLSADPET 88
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+RWAMLG L C FKAG+QIF EGGLDYL NPS
Sbjct: 89 FAKNRELEVIHSRWAMLGALGCVFPELLSKNGIKFGEAVWFKAGSQIFKEGGLDYLGNPS 148
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 149 LVHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPI 186
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 120/165 (72%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRK-TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK T K +S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 33 VHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 92
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 93 LSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 152
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 153 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 197
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/171 (67%), Positives = 123/171 (71%), Gaps = 20/171 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G +TMRKT KPK SGS WYG +RVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSERVKYLGPFSGEPPSYLTGEFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFARNRELQVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLL 190
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 110/164 (67%), Positives = 120/164 (73%), Gaps = 19/164 (11%)
Query: 8 HGKGCITMRKTAGKPK-PVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
HG+ +TMRK GK SS S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 38 HGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLD
Sbjct: 98 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLD 157
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL +P+L+HAQSILA+WA QVILMGA+ GY AGGPLGEVTDP+
Sbjct: 158 YLGSPNLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI 201
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 211 bits (538), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 110/160 (68%), Positives = 119/160 (74%), Gaps = 20/160 (12%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ++MRKT K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSADP
Sbjct: 29 GRVSMRKTV--TKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+N EL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 87 ETFARNPELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
PSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 147 PSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 186
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 211 bits (538), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 119/165 (72%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ + MRK K VS S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 VHGEARVMMRKATTKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 150 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI 194
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 211 bits (537), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 113/169 (66%), Positives = 123/169 (72%), Gaps = 20/169 (11%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
AAS++ G G +TMRKT KPK SGS WYG DRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 21 AASDVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWD 79
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QIFS+
Sbjct: 80 TAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSD 139
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 140 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLL 188
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 119/165 (72%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK K VS S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 VHGEARVTMRKATTKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLG VTDP+
Sbjct: 150 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGXVTDPI 194
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/169 (66%), Positives = 123/169 (72%), Gaps = 20/169 (11%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
AAS++ G G +TMRKT KPK SGS WYG DRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 1 AASDVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWD 59
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QIFS+
Sbjct: 60 TAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSD 119
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 120 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLL 168
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/165 (67%), Positives = 120/165 (72%), Gaps = 19/165 (11%)
Query: 7 IHGKGCITMRKTAGKPKPV-SSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
+HG+ +TMRK K V +S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA
Sbjct: 30 VHGEARVTMRKATTKKVSVPASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAG 89
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGL
Sbjct: 90 LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 149
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSL+HAQSILA+WA QVILMGAV GY AGGPL EVTDP+
Sbjct: 150 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLREVTDPI 194
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 116/155 (74%), Gaps = 18/155 (11%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
RK+A K SSGS WYGPDRVKYL P SG +P YLTGEFPGDYGWDTA LSADPE F+K
Sbjct: 1 RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSK 60
Query: 76 NRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIH 117
NREL+VIH+RWAMLG L FKAG+QIFSEGGLDYL NPSL+H
Sbjct: 61 NRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 118 AQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
AQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 121 AQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 155
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/167 (69%), Positives = 125/167 (74%), Gaps = 19/167 (11%)
Query: 5 SEIHGKGCITMRKTAGKPKPV-SSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
S + G+ +TMRKTA K KP SSGS WYGPDRV YL PLSG P YLTGEFPGDYGWDT
Sbjct: 59 SSLFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGAPPSYLTGEFPGDYGWDT 118
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 119 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 178
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSLIHAQSILA+WA QV+LMGA+ GY AGGPLGEV DPL
Sbjct: 179 GLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPL 225
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/164 (67%), Positives = 119/164 (72%), Gaps = 19/164 (11%)
Query: 8 HGKGCITMRKTAGKPKPVSS-GSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
HG+ +TMRK GK +S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 38 HGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLD
Sbjct: 98 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLD 157
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL +P LIHAQSILA+WA QVILMGA+ GY AGGPLGEVTDP+
Sbjct: 158 YLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI 201
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 119/164 (72%), Gaps = 19/164 (11%)
Query: 8 HGKGCITMRKTAGKPKPVSS-GSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
HG+ +TMRK G+ +S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 38 HGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLD
Sbjct: 98 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLD 157
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL +P LIHAQSILA+WA QVILMGA+ GY AGGPLGEVTDP+
Sbjct: 158 YLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI 201
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/167 (69%), Positives = 125/167 (74%), Gaps = 19/167 (11%)
Query: 5 SEIHGKGCITMRKTAGKPKPV-SSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
S + G+ +TMRKTA K KP SSGS WYGPDRV YL PLSG P YLTGEFPGDYGWDT
Sbjct: 22 SSLFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGAPPSYLTGEFPGDYGWDT 81
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 82 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 141
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSLIHAQSILA+WA QV+LMGA+ GY AGGPLGEV DPL
Sbjct: 142 GLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPL 188
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/167 (69%), Positives = 125/167 (74%), Gaps = 19/167 (11%)
Query: 5 SEIHGKGCITMRKTAGKPKPV-SSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
S + G+ +TMRKTA K KP SSGS WYGPDRV YL PLSG P YLTGEFPGDYGWDT
Sbjct: 22 SSLFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDT 81
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 82 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 141
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSLIHAQSILA+WA QV+LMGA+ GY AGGPLGEV DPL
Sbjct: 142 GLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPL 188
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/171 (66%), Positives = 122/171 (71%), Gaps = 21/171 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G ITMRK + P SGS WYG DRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPAASEVFGTGRITMRKASKPTGP--SGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVEFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
S+GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 139 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLL 189
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/171 (66%), Positives = 122/171 (71%), Gaps = 21/171 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G ITMRK + P SGS WYG DRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPAASEVFGTGRITMRKASKPTGP--SGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
S+GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 139 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLL 189
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 208 bits (529), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 109/167 (65%), Positives = 119/167 (71%), Gaps = 18/167 (10%)
Query: 6 EIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTAC 65
++ G+G ITMRKTA KPKP SGS WYG DRV YL PLSG P YLTGEFPGDYGWDT
Sbjct: 23 DVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEG 82
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGL 107
LSADPE FAKNREL+VIH RWA+ L C FKAG+QIFSEGGL
Sbjct: 83 LSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGL 142
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPLSL 154
+ NPSL+HAQSILA+WA QV+LMGAV GY AGG LGEV DPL L
Sbjct: 143 SHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYL 189
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/146 (73%), Positives = 112/146 (76%), Gaps = 18/146 (12%)
Query: 25 VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
VSSGS WYGP+RVKYL P SG AP YLTGEFPGDYGWDTA LSADPE FAKNREL+VIH
Sbjct: 1 VSSGSPWYGPERVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHC 60
Query: 85 RWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
RWAMLG L C FKAGAQIFSEGGLDYL NPSL+HAQSILA+WA
Sbjct: 61 RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWA 120
Query: 127 IQVILMGAVGGYGTAGGPLGEVTDPL 152
QV+LMGAV GY AGGPLGEV DPL
Sbjct: 121 TQVLLMGAVEGYRVAGGPLGEVVDPL 146
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 119/164 (72%), Gaps = 19/164 (11%)
Query: 8 HGKGCITMRKTAGKPK-PVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
HG+ +TMRK GK SS S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 38 HGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEG LD
Sbjct: 98 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGWLD 157
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL +P+L+HAQSILA+WA QVILMGA+ GY AGGPLGEVTDP+
Sbjct: 158 YLGSPNLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI 201
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/171 (65%), Positives = 122/171 (71%), Gaps = 21/171 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G +TMRK + P SGS WYG DRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPAASEVFGTGRVTMRKASKPTGP--SGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
S+GGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 139 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLL 189
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/164 (67%), Positives = 118/164 (71%), Gaps = 19/164 (11%)
Query: 8 HGKGCITMRKTAGKPK-PVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
HG+ +TMRK GK SS S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 38 HGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLD
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLD 157
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL +P+LIHAQSILA+ A QVILMGA+ GY AGGPLGEVTDP+
Sbjct: 158 YLGSPNLIHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPI 201
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/171 (66%), Positives = 120/171 (70%), Gaps = 21/171 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ASE+ G G +TMRKT P SGS WYG DRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPGASEVFGTGRVTMRKTVKPTGP--SGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 139 SEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLL 189
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 118/164 (71%), Gaps = 19/164 (11%)
Query: 8 HGKGCITMRKTAGKPK-PVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
HG+ +TMRK GK SS S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 38 HGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLD
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLD 157
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL +P+L+HAQSILA+ A QVILMGA+ GY AGGPLGEVTDP+
Sbjct: 158 YLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPI 201
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 118/164 (71%), Gaps = 19/164 (11%)
Query: 8 HGKGCITMRKTAGKPK-PVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
HG+ +TMRK GK SS S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 38 HGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEQPSYLTGEFPGDYGWDTAGL 97
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLD
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLD 157
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL +P+L+HAQSILA+ A QVILMGA+ GY AGGPLGEVTDP+
Sbjct: 158 YLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPI 201
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/171 (66%), Positives = 120/171 (70%), Gaps = 21/171 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S ASE+ G G +TMRKT P SGS WYG DRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPGASEVFGTGRVTMRKTVKPTGP--SGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 79 WDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 138
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 139 SEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLL 189
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 118/164 (71%), Gaps = 19/164 (11%)
Query: 8 HGKGCITMRKTAGKPK-PVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
HG+ +TMRK GK SS S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 38 HGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLD
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLD 157
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL +P+L+HAQSILA+ A QVILMGA+ GY AGGPLGEVTDP+
Sbjct: 158 YLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPI 201
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 118/164 (71%), Gaps = 19/164 (11%)
Query: 8 HGKGCITMRKTAGKPK-PVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
HG+ +TMRK GK SS S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 38 HGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLD
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLD 157
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL +P+L+HAQSILA+ A QVILMGA+ GY AGGPLGEVTDP+
Sbjct: 158 YLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPI 201
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/167 (69%), Positives = 125/167 (74%), Gaps = 19/167 (11%)
Query: 5 SEIHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
S + G+ +TMRKTA K KP + SGS WYGPDRV YL PLSG P YLTGEFPGDYGWDT
Sbjct: 22 SSLFGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDT 81
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEG
Sbjct: 82 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 141
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 142 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/171 (67%), Positives = 127/171 (74%), Gaps = 19/171 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDY 59
++ +S G+ +TMRKTA K KP + SGS WYGPDRV YL PLSG P YLTGEFPGDY
Sbjct: 19 NVPSSSAFGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDY 78
Query: 60 GWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQI 101
GWDTA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QI
Sbjct: 79 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQI 138
Query: 102 FSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
FSEGGLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 139 FSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 189
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 108/164 (65%), Positives = 118/164 (71%), Gaps = 19/164 (11%)
Query: 8 HGKGCITMRKTAGKPK-PVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
HG+ +TMR+ GK SS S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 38 HGEARLTMREATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLD
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLD 157
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL +P+L+HAQSILA+ A QVILMGA+ GY AGGPLGEVTDP+
Sbjct: 158 YLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPI 201
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 105/144 (72%), Positives = 110/144 (76%), Gaps = 18/144 (12%)
Query: 27 SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
SGS WYGPDRV YL PLSG P YLTGEFPGDYGWDTA LSADPE FAKNREL+VIH+RW
Sbjct: 45 SGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 87 AMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQ 128
AMLG L C FKAG+QIFSEGGLDYL NPSLIHAQSILA+WA Q
Sbjct: 105 AMLGALGCVFPELLARNGVKFGEAVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 129 VILMGAVGGYGTAGGPLGEVTDPL 152
V+LMGAV GY AGGPLGEV DPL
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 204 bits (519), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/158 (67%), Positives = 115/158 (72%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
I+MRKTA K SS S WYG DR KYL P SG P YL GEF GDYGWDTA LS+DPE
Sbjct: 35 ISMRKTASK----SSDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET 90
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 91 FARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 150
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QVILMGAV GY AGGPLG+VTDP+
Sbjct: 151 LVHAQSILAIWASQVILMGAVEGYRVAGGPLGDVTDPI 188
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/167 (69%), Positives = 123/167 (73%), Gaps = 19/167 (11%)
Query: 5 SEIHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
S G+ +TMRKTA K KP + SGS WYGPDRV YL PLSG P YLTGEFPGDYGWDT
Sbjct: 22 SSSFGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDT 81
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIFSEG
Sbjct: 82 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 141
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 142 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/171 (64%), Positives = 120/171 (70%), Gaps = 20/171 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G +TMRKT KPK SGS WYG +RVKYL P SG P YLTG+FPGDYG
Sbjct: 21 SPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSERVKYLGPFSGEPPSYLTGQFPGDYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSA PE F +NREL+VIH RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSAVPETFVRNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIF 139
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
SEGGLDYL NPSL+HAQSILA+WA QVILMGAV GY G GPLGE D L
Sbjct: 140 SEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVPGDGPLGEAEDLL 190
>gi|47026947|gb|AAT08694.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 211
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/144 (71%), Positives = 108/144 (75%), Gaps = 18/144 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
TMRKTA KPK VSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWDTA LSADPE
Sbjct: 33 FTMRKTAAKPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET 92
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
F+KNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 93 FSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 115 LIHAQSILAVWAIQVILMGAVGGY 138
L+HAQSILA+WA QV+LMG GY
Sbjct: 153 LVHAQSILAIWATQVLLMGGRRGY 176
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/171 (66%), Positives = 128/171 (74%), Gaps = 19/171 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSS-GSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDY 59
++A +++ G+G +TMRK+A KPKP ++ GS WYG DRV YL PLSG P YLTGEFPGDY
Sbjct: 18 AVANAKVFGEGRVTMRKSAAKPKPAAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDY 77
Query: 60 GWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQI 101
GWDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QI
Sbjct: 78 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQI 137
Query: 102 FSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
FSEGGLDYL NPSLIHAQSILA+W QV+LMGAV GY AGGPLGEV DPL
Sbjct: 138 FSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVAGGPLGEVVDPL 188
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/158 (67%), Positives = 115/158 (72%), Gaps = 24/158 (15%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+TMRK + SS S WYG DR KYL PLSG P YLTGEF GDYGWDTA LS+DPE
Sbjct: 35 VTMRKAS------SSDSIWYGADRPKYLGPLSGETPSYLTGEFAGDYGWDTAGLSSDPET 88
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAG+QIFSEGGLDYL NPS
Sbjct: 89 FARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 148
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 149 LVHAQSILAIWASQVILMGAVEGYRVAGGPLGEVTDPI 186
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 202 bits (513), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/162 (64%), Positives = 115/162 (70%), Gaps = 20/162 (12%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+ +TMRKT K S S WYG DR K+L P SG P YL GEF GDYGWDTA LS+
Sbjct: 32 GEARVTMRKTVSKSS--GSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSS 89
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 90 DPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYL 149
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA QVILMGAV GY AGGPLG+VTDP+
Sbjct: 150 GNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGDVTDPI 191
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 102/130 (78%), Positives = 108/130 (83%), Gaps = 2/130 (1%)
Query: 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
K VSSGS WYGPDRVKYL P G AP YLTGEFPGDYGW+TA LSADPE FAKNREL+VI
Sbjct: 25 KKVSSGSPWYGPDRVKYLGPFFGEAPSYLTGEFPGDYGWNTAGLSADPETFAKNRELEVI 84
Query: 83 HARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG 142
H+RWAM FKA +QIFSEGGLDYL NPSL+HAQSILA+WA QVILMGAV GY AG
Sbjct: 85 HSRWAMFD--RWFKARSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG 142
Query: 143 GPLGEVTDPL 152
GPLGEV DPL
Sbjct: 143 GPLGEVIDPL 152
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 202 bits (513), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 105/158 (66%), Positives = 113/158 (71%), Gaps = 20/158 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+TMR+T K S S WYG DR KYL P SG P YL GEF GDYGWDTA LS+DPE
Sbjct: 35 VTMRRTVNKS--AGSDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET 92
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 93 FARNRELEVIHARWAMLGALGCVTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 153 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPI 190
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 104/158 (65%), Positives = 114/158 (72%), Gaps = 20/158 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+TMR+T K S S WYG DR K+L P SG P YLTGEF GDYGWDTA LS+DPE
Sbjct: 35 VTMRRTVSKS--AGSDSIWYGADRPKFLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPET 92
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 93 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI 190
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 201 bits (511), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 104/148 (70%), Positives = 111/148 (75%), Gaps = 18/148 (12%)
Query: 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
K SS S W+GPD VKYL P SG +P YLTGEFPGDYGWDTA LSADPE FAKNREL+VI
Sbjct: 4 KVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 63
Query: 83 HARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAV 124
H+RWAMLG L C FKAG+QIFSEGGLDYL NPSL+HAQSILA+
Sbjct: 64 HSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI 123
Query: 125 WAIQVILMGAVGGYGTAGGPLGEVTDPL 152
WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 124 WATQVILMGAVEGYRIAGGPLGEVVDPL 151
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 201 bits (511), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 103/158 (65%), Positives = 114/158 (72%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+TMR+T +S S WYG DR KYL P SG P YLTGEF GDYGWDTA LS+DPE
Sbjct: 35 VTMRRTVKS----TSDSIWYGADRPKYLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPET 90
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 91 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 150
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QV+LMGAV GY AGGPLGE+TDP+
Sbjct: 151 LVHAQSILAIWASQVVLMGAVEGYRVAGGPLGEITDPI 188
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 115/162 (70%), Gaps = 19/162 (11%)
Query: 8 HGKGCITMRKTAGKPK-PVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
HG+ +TMRK GK SS S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 38 HGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLD
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLD 157
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
YL +P+L+HAQSILA+ A QVILMGA+ GY AGGPLGEV +
Sbjct: 158 YLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVKE 199
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/158 (65%), Positives = 113/158 (71%), Gaps = 20/158 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+TMR+T K S S WYG DR K+L P SG P YL GEF GDYGWDTA LS+DPE
Sbjct: 35 VTMRRTVNKS--AGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET 92
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 93 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI 190
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/158 (65%), Positives = 113/158 (71%), Gaps = 20/158 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+TMR+T K S S WYG DR K+L P SG P YL GEF GDYGWDTA LS+DPE
Sbjct: 35 VTMRRTVSKS--AGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET 92
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 93 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI 190
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/162 (67%), Positives = 117/162 (72%), Gaps = 28/162 (17%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ++MRKTA PK VSSGS WYGPDRVKYL P SG AP YLTGEF G LSA
Sbjct: 28 GVGRVSMRKTA--PKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSA 77
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 78 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 137
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 138 GNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 179
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/158 (66%), Positives = 114/158 (72%), Gaps = 24/158 (15%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+TMRK+AG S S WYG DR K+L P SG P YL GEF GDYGWDTA LS+DPE
Sbjct: 35 VTMRKSAG------SDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET 88
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 89 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 148
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 149 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPI 186
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/158 (65%), Positives = 113/158 (71%), Gaps = 20/158 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+TMRKT K S S WYG DR K+L P SG P YL GEF GDYGWDTA LS+DPE
Sbjct: 35 VTMRKTVSKSS--GSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET 92
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 93 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QVILMGAV GY AGGPLG+VTDP+
Sbjct: 153 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGDVTDPI 190
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 115/157 (73%), Gaps = 20/157 (12%)
Query: 15 MRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
MRKT KPK SGS WYG DRVKYL P SG +P YLTGEFPGDYGWDTA LSADPE FA
Sbjct: 1 MRKTVAKPKG-PSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFA 59
Query: 75 KNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLI 116
+NREL+VIH+RWAMLG L C FKAG+QIFS+GGLDYL NPSL+
Sbjct: 60 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLV 119
Query: 117 HAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 120 HAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLL 156
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 113/156 (72%), Gaps = 19/156 (12%)
Query: 16 RKTAGKPKPVSS-GSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
RK GK +S S WYGPDRV YL P SG P YLTGEFPGDYGWDTA LSADPE FA
Sbjct: 1 RKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA 60
Query: 75 KNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLI 116
KNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL +P LI
Sbjct: 61 KNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLI 120
Query: 117 HAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
HAQSILA+WA QVILMGA+ GY AGGPLGEVTDP+
Sbjct: 121 HAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI 156
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 113/158 (71%), Gaps = 20/158 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+TMR+T K S + WYG DR K+L P SG P YL GEF GDYGWDTA LS+DPE
Sbjct: 36 VTMRRTVSKS--AGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET 93
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 94 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 153
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 154 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI 191
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/158 (65%), Positives = 114/158 (72%), Gaps = 24/158 (15%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
++MRK++G S S WYG DR K+L P SG P YL GEF GDYGWDTA LS+DPE
Sbjct: 35 VSMRKSSG------SDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET 88
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 89 FARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 148
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 149 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPI 186
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/171 (65%), Positives = 126/171 (73%), Gaps = 19/171 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSS-GSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDY 59
++A +++ G+G +TMRK+A KPKP ++ GS WYG DRV YL PLSG P YLTGEF GDY
Sbjct: 18 AVANAKVFGEGRVTMRKSAAKPKPAAASGSPWYGADRVLYLGPLSGEPPSYLTGEFSGDY 77
Query: 60 GWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQI 101
GWDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QI
Sbjct: 78 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQI 137
Query: 102 FSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
FSEGGLDYL NPSLIHAQSILA+W QV+ MGAV GY AGGPLGEV DPL
Sbjct: 138 FSEGGLDYLGNPSLIHAQSILAIWGCQVVFMGAVEGYRVAGGPLGEVVDPL 188
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/167 (67%), Positives = 121/167 (72%), Gaps = 19/167 (11%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
A+ + G G ITMRK+ K SSGS WYG DRV YL PLSG P YLTGEFPGDYGWDT
Sbjct: 18 AATVLGGGRITMRKSVAKAS-SSSGSPWYGSDRVLYLGPLSGDPPSYLTGEFPGDYGWDT 76
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIFSEG
Sbjct: 77 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 136
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGE+ DPL
Sbjct: 137 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPL 183
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/158 (65%), Positives = 113/158 (71%), Gaps = 20/158 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
++MRKT K S S WYG DR K+L P SG P YL GEF GDYGWDTA LS+DPE
Sbjct: 34 VSMRKTVSKSS--GSDSIWYGADRPKWLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 92 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 151
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QVILMGAV GY AGGPLG+VTDP+
Sbjct: 152 LVHAQSILAIWASQVILMGAVEGYRVAGGPLGDVTDPI 189
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 113/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
GKG TMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GKGRFTMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCTFPEILERNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 147 GNPNLIHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPL 188
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 101/148 (68%), Positives = 109/148 (73%), Gaps = 18/148 (12%)
Query: 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
K +SGS WYG DR YL P SG P YLTGEFPGDYGWDTA LSADPE FAKNREL++I
Sbjct: 42 KASTSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELI 101
Query: 83 HARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAV 124
HARWAMLG L C FKAG+QIF+EGGLDYL NPSL+HAQSILA+
Sbjct: 102 HARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAI 161
Query: 125 WAIQVILMGAVGGYGTAGGPLGEVTDPL 152
WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 162 WAFQVVLMGAVEGYRVAGGPLGEVEDPL 189
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/166 (60%), Positives = 117/166 (70%), Gaps = 18/166 (10%)
Query: 5 SEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
S+ G+G TMR T +P+ +G WYGPDRVKY+ P SG P YLTGEFPGDYGWD+A
Sbjct: 26 SKNLGEGGFTMRSTLSRPRQSITGGPWYGPDRVKYMGPFSGQTPSYLTGEFPGDYGWDSA 85
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGG 106
LSA+PE FAKNREL+VIHARWAMLG + C FKAG+QIF + G
Sbjct: 86 GLSAEPETFAKNRELEVIHARWAMLGTVGCIVPELLERNGVKIGEAVWFKAGSQIFRDEG 145
Query: 107 LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+YL +P LIHAQ+ILAV A QVILMGA+ GY +GGPLGE TDPL
Sbjct: 146 LNYLGDPKLIHAQNILAVLAAQVILMGAIEGYRISGGPLGEPTDPL 191
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/169 (61%), Positives = 117/169 (69%), Gaps = 22/169 (13%)
Query: 2 LAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGW 61
L + + G G +TMR+T K P S WYGPDR KYL P S P YLTGE+PGDYGW
Sbjct: 24 LRKAGVSGGGRVTMRRTV-KSTPQSI---WYGPDRPKYLGPFSENTPSYLTGEYPGDYGW 79
Query: 62 DTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFS 103
DTA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFS
Sbjct: 80 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFS 139
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
EGGLDYL NP+LIHAQSILA+WA+QV+LMG + GY GGPLGE DPL
Sbjct: 140 EGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPL 188
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 103/164 (62%), Positives = 115/164 (70%), Gaps = 22/164 (13%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+ G G +TMR+T K P S WYGPDR KYL P S P YLTGE+PGDYGWDTA L
Sbjct: 29 VSGGGRVTMRRTV-KSTPQSI---WYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGL 84
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLD
Sbjct: 85 SADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLD 144
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL NP+LIHAQSILA+WA+QV+LMG + GY GGPLGE DPL
Sbjct: 145 YLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPL 188
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/164 (62%), Positives = 115/164 (70%), Gaps = 22/164 (13%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+ G G +TMR+T K P S WYGPDR KYL P S P YLTGE+PGDYGWDTA L
Sbjct: 29 VSGGGRVTMRRTV-KSTPQSI---WYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGL 84
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLD
Sbjct: 85 SADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLD 144
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL NP+LIHAQSILA+WA+QV+LMG + GY GGPLGE DPL
Sbjct: 145 YLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPL 188
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/164 (62%), Positives = 115/164 (70%), Gaps = 22/164 (13%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+ G G +TMR+T K P S WYGPDR KYL P S P YLTGE+PGDYGWDTA L
Sbjct: 29 VSGGGRVTMRRTV-KSTPQSI---WYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGL 84
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLD
Sbjct: 85 SADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLD 144
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL NP+LIHAQSILA+WA+QV+LMG + GY GGPLGE DPL
Sbjct: 145 YLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPL 188
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 113/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GEGRITMRRTV-KSVPASI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE DPL
Sbjct: 147 GNPNLIHAQSILAIWATQVVLMGFVEGYRIGGGPLGEGLDPL 188
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/162 (64%), Positives = 114/162 (70%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
GKG TMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GKGRTTMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 87 DPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGSQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA+QV+LMG V GY GGPLGE DP+
Sbjct: 147 GNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPI 188
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/164 (62%), Positives = 115/164 (70%), Gaps = 22/164 (13%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+ G G +TMR+T K P S WYGPDR KYL P S P YLTGE+PGDYGWDTA L
Sbjct: 29 VLGGGRVTMRRTV-KSTPQSI---WYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGL 84
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLD 108
SADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLD
Sbjct: 85 SADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLD 144
Query: 109 YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
YL NP+LIHAQSILA+WA+QV+LMG + GY GGPLGE DPL
Sbjct: 145 YLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPL 188
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 112/158 (70%), Gaps = 20/158 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+TMR+T K S S WYG DR K+L P SG P YL GEF GDYGWDTA LS+D E
Sbjct: 35 VTMRRTVSKS--ARSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDLET 92
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIHARWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 93 FARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI 190
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 113/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GGGRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA+QV+LMG V GY GGPLGE DP+
Sbjct: 147 GNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPI 188
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/162 (64%), Positives = 113/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
GKG MR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GKGRTNMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA+QV+LMG V GY GGPLGE DP+
Sbjct: 147 GNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPI 188
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/162 (64%), Positives = 113/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GDGRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGESVWFKAGSQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE DP+
Sbjct: 147 GNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDPI 188
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/162 (64%), Positives = 114/162 (70%), Gaps = 19/162 (11%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ++ A K K SGS WYG DR YL P SG P YL+GEFPGDYGWDTA LSA
Sbjct: 28 GAGEARVQMMAPKSK-APSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIF+EGGLDYL
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DP+
Sbjct: 147 GNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPI 188
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 111/158 (70%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T ++ S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 36 ITMRRTVR----IAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NP+
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 151
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 152 LIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPL 189
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/162 (63%), Positives = 113/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
GKG MR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GKGRTNMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 87 DPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGSQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA+QV+LMG V GY GGPLGE DP+
Sbjct: 147 GNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPI 188
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/158 (65%), Positives = 110/158 (69%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S G P YLTGEFPGDYGWDTA LSADPE
Sbjct: 36 ITMRRTVRS----APESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCLFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 151
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 152 LIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPL 189
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 110/158 (69%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 36 ITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NP+
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 151
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 152 LIHAQSILAIWAFQVVLMGLIEGYRVGGGPLGEGLDPL 189
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 195 bits (495), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 112/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GGGRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHCRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE DP+
Sbjct: 147 GNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPI 188
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/162 (63%), Positives = 111/162 (68%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G +MR+T P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 9 GGGRFSMRRTVKSAPP----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 64
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 65 DPETFAKNRELEVIHCRWAMLGALGCVFPEVLSKNGVKFGEAVWFKAGAQIFSEGGLDYL 124
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA+QV+LMG V GY GGPLGE DP+
Sbjct: 125 GNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPI 166
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 194 bits (494), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 104/162 (64%), Positives = 113/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKN EL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 87 DPETFAKNGELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+L+HAQSILA+WA+QV+LMG V GY GGPLGE DPL
Sbjct: 147 GNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPL 188
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/162 (64%), Positives = 113/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G +TMR+T K P S WYGPDR K+L P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GGGRVTMRRTV-KSAPQSI---WYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGESVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE DP+
Sbjct: 147 GNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDPI 188
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/162 (64%), Positives = 113/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G +TMR+T K P S WYGPDR K+L P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GGGRVTMRRTV-KSAPQSI---WYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGESVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE DP+
Sbjct: 147 GNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDPI 188
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/162 (64%), Positives = 112/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+ TMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GQSRFTMRRTV-KSAPESI---WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE DPL
Sbjct: 147 GNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPL 188
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/162 (64%), Positives = 112/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+ TMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GQSRFTMRRTV-KSAPESI---WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE DPL
Sbjct: 147 GNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPL 188
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 110/158 (69%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 36 ITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NP+
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 151
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 152 LIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPL 189
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 110/158 (69%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 4 ITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 59
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NP+
Sbjct: 60 FAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 119
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 120 LIHAQSILAIWAFQVVLMGLIEGYRVGGGPLGEGLDPL 157
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/162 (63%), Positives = 112/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
GKG MR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GKGRTNMRRTV-KSAPQSI---WYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH+RWAMLG L FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFARNRELEVIHSRWAMLGALGIVFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA+QV+LMG V GY GGPLGE DP+
Sbjct: 147 GNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPI 188
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/163 (62%), Positives = 113/163 (69%), Gaps = 22/163 (13%)
Query: 8 HGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLS 67
+G G + MR+T K P S WYGPDR KYL P S P YLTGE+PGDYGWDTA LS
Sbjct: 31 NGGGRVVMRRTV-KSTPQSI---WYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLS 86
Query: 68 ADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDY 109
ADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDY
Sbjct: 87 ADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDY 146
Query: 110 LENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L NP+LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 147 LGNPNLIHAQSILAIWASQVVLMGLIEGYRIGGGPLGEGLDPL 189
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/160 (63%), Positives = 112/160 (70%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ++MR+T K P S WYGPDR K+L P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 32 GRVSMRRTV-KAAPQSI---WYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 87
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIHARWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 88 ETFAKNRELEVIHARWAMLGALGCIFPELLSKNGVKFGEAVWFKAGSQIFSEGGLDYLGN 147
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 148 PNLIHAQSILAIWATQVVLMGFIEGYRVGGGPLGEGLDPL 187
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 110/158 (69%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 16 ITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 71
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NP+
Sbjct: 72 FAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 131
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 132 LIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPL 169
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/163 (63%), Positives = 113/163 (69%), Gaps = 22/163 (13%)
Query: 8 HGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLS 67
+G G I MR+T K P S WYGPDR KYL P S P YLTGE+PGDYGWDTA LS
Sbjct: 31 NGGGRIIMRRTV-KSTPQSI---WYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLS 86
Query: 68 ADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDY 109
ADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDY
Sbjct: 87 ADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDY 146
Query: 110 LENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L NP+LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 147 LGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPLGEGLDPL 189
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/163 (62%), Positives = 113/163 (69%), Gaps = 22/163 (13%)
Query: 8 HGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLS 67
+G G + MR+T K P S WYGPDR KYL P S P YLTGE+PGDYGWDTA LS
Sbjct: 31 NGGGRVVMRRTV-KSTPQSI---WYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLS 86
Query: 68 ADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDY 109
ADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDY
Sbjct: 87 ADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDY 146
Query: 110 LENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L NP+LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 147 LGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPLGEGLDPL 189
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 109/158 (68%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 36 ITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 151
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 152 LIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPL 189
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/162 (63%), Positives = 112/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+ TMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GQSRFTMRRTV-KSAPESI---WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA +V+LMG V GY GGPLGE DPL
Sbjct: 147 GNPNLIHAQSILAIWATRVVLMGFVEGYRVGGGPLGEGLDPL 188
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 97/140 (69%), Positives = 104/140 (74%), Gaps = 18/140 (12%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYG DR KYL P SG P YL GEF GDYGWDTA LS+DPE FA+NREL+VIHARWAMLG
Sbjct: 51 WYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLG 110
Query: 91 VLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILM 132
L C FKAGAQIFSEGGLDYL NPSL+HAQSILA+WA QVILM
Sbjct: 111 ALGCVTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILM 170
Query: 133 GAVGGYGTAGGPLGEVTDPL 152
GAV GY AGGPLG+VTDP+
Sbjct: 171 GAVEGYRVAGGPLGDVTDPI 190
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 109/158 (68%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S P YLTGEFPGDY WDTA LSADPE
Sbjct: 36 ITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NP+
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 151
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 152 LIHAQSILAIWAFQVVLMGLIEGYRVGGGPLGEGLDPL 189
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 111/158 (70%), Gaps = 22/158 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 87 ETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
P+L+HAQSILA+WA+QV+LMG V GY GGPLGE D
Sbjct: 147 PNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD 184
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/162 (63%), Positives = 112/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ++MR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GGGRVSMRRTV-KSAPTSI---WYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE DP+
Sbjct: 147 GNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPI 188
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/162 (62%), Positives = 112/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+ TMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GQARFTMRRTV-KSAPESI---WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH+RWAMLG L C FKAG+QIF+EGGLDYL
Sbjct: 87 DPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE DPL
Sbjct: 147 GNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPL 188
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/162 (62%), Positives = 112/162 (69%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+ TMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GQARFTMRRTV-KSAPESI---WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH+RWAMLG L C FKAG+QIF+EGGLDYL
Sbjct: 87 DPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE DPL
Sbjct: 147 GNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPL 188
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 111/158 (70%), Gaps = 22/158 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 87 ETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
P+L+HAQSILA+WA+QV+LMG V GY GGPLGE D
Sbjct: 147 PNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD 184
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 109/158 (68%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 36 ITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 151
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 152 LIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDPL 189
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 112/160 (70%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ++MR+T K P S WYG DR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 32 GRVSMRRTV-KSAPQSI---WYGADRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 87
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 88 ETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 147
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+L+HAQSILA+WA+QV+LMG + GY GGPLGE DPL
Sbjct: 148 PNLVHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPL 187
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/162 (62%), Positives = 111/162 (68%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ITMR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GGGRITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPEILARNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+L+HAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 147 GNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKI 188
>gi|116788195|gb|ABK24790.1| unknown [Picea sitchensis]
Length = 151
Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/151 (67%), Positives = 109/151 (72%), Gaps = 19/151 (12%)
Query: 15 MRKTAGKPK-PVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIF 73
MRK GK SS S WYGPDRV YL P SG P YLTGEFPGDYGWDTA LSADPE F
Sbjct: 1 MRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF 60
Query: 74 AKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSL 115
AKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL +P+L
Sbjct: 61 AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNL 120
Query: 116 IHAQSILAVWAIQVILMGAVGGYGTAGGPLG 146
+HAQSILA+WA QVILMGA+ GY AGGPLG
Sbjct: 121 VHAQSILAIWACQVILMGAIEGYRVAGGPLG 151
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 111/158 (70%), Gaps = 22/158 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL++IH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 87 ETFAKNRELELIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
P+L+HAQSILA+WA+QV+LMG V GY GGPLGE D
Sbjct: 147 PNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD 184
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 103/162 (63%), Positives = 111/162 (68%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G TMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GGARFTMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGESVWFKAGSQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE DP+
Sbjct: 147 GNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPI 188
>gi|225690798|gb|ACO06085.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 196
Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 111/158 (70%), Gaps = 22/158 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 87 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
P+L+HAQSILA+WA+QV+LMG + GY GGPLGE D
Sbjct: 147 PNLVHAQSILAIWAVQVVLMGFIEGYRVGGGPLGEGLD 184
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 109/158 (68%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 36 ITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NP+
Sbjct: 92 FAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 151
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LIHAQSILA+WA QV LMG + GY GGPLGE DPL
Sbjct: 152 LIHAQSILAIWASQVGLMGLIEGYRVGGGPLGEGLDPL 189
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/162 (64%), Positives = 111/162 (68%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+L+HAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 147 GNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDAI 188
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 111/158 (70%), Gaps = 22/158 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL++IH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 87 ETFARNRELELIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
P+L+HAQSILA+WA+QV+LMG V GY GGPLGE D
Sbjct: 147 PNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD 184
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/167 (61%), Positives = 114/167 (68%), Gaps = 22/167 (13%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
A+ + G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDT
Sbjct: 21 AAGVDAGGRITMRRTV-KSVPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT 76
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADPE FA+NREL+VIH+RWAMLG L C FKAGAQIFSEG
Sbjct: 77 AGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEG 136
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NP+L+HAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 137 GLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKV 183
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 110/158 (69%), Gaps = 22/158 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 87 ETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
P+L+HAQSILA+WA QV+LMG V GY GGPLGE D
Sbjct: 147 PNLVHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLD 184
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/163 (61%), Positives = 113/163 (69%), Gaps = 22/163 (13%)
Query: 8 HGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLS 67
+G G + MR+T K P S WYGPDR KYL P S P YLTGE+PGDYGWDTA LS
Sbjct: 31 NGGGRVIMRRTV-KSTPQSI---WYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLS 86
Query: 68 ADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDY 109
ADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDY
Sbjct: 87 ADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDY 146
Query: 110 LENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L +P+LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 147 LGSPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPLGEGLDPL 189
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/162 (62%), Positives = 110/162 (67%), Gaps = 24/162 (14%)
Query: 10 KGCITMRKT-AGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
+G MR+T A PK + WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 RGRFFMRRTTASTPKSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 85
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 86 DPETFAKNRELEVIHGRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYL 145
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 146 GNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDAI 187
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 110/158 (69%), Gaps = 22/158 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 30 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 85
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 86 ETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 145
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
P+L+HAQSILA+WA QV+LMG V GY GGPLGE D
Sbjct: 146 PNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLD 183
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 108/158 (68%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S G P YLTGEFPGDYGWDTA +SADPE
Sbjct: 36 ITMRRTVRS----APESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDY NP+
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPN 151
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LIHAQSILA+WA QV+LMG + GY GG LGE DPL
Sbjct: 152 LIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPL 189
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 110/160 (68%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G TMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 33 GRFTMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEVLSKNGVKFGEAVWFKAGSQIFSEGGLDYLGN 148
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+LIHAQSILA+WA QV+LMG + GY GGPLGE D +
Sbjct: 149 PNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKI 188
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 111/160 (69%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 87 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+L+HAQSILA+WA QV+LMG + GY GGPLGE D +
Sbjct: 147 PNLVHAQSILAIWACQVVLMGFIEGYRVGGGPLGEGLDKI 186
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 110/158 (69%), Gaps = 22/158 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 87 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
P+L+HAQSILA+WA+QV+LMG + GY GGPL E D
Sbjct: 147 PNLVHAQSILAIWAVQVVLMGFIEGYRVGGGPLDEGLD 184
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/162 (62%), Positives = 110/162 (67%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G TMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GSSRTTMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGSQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+L+HAQSILA+WA QV+LMG + GY GGPLGE D L
Sbjct: 147 GNPNLVHAQSILAIWASQVVLMGLIEGYRIGGGPLGEGLDSL 188
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/156 (65%), Positives = 109/156 (69%), Gaps = 22/156 (14%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GGGHITMRRTV-KSAPESI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLG 146
NP+L+HAQSILA+WA QV+LMG V GY GGPLG
Sbjct: 147 GNPNLVHAQSILAIWASQVVLMGFVEGYRVGGGPLG 182
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/142 (68%), Positives = 103/142 (72%), Gaps = 18/142 (12%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
S WYGPDR KYL P S G P YLTGEFPGDYGWDTA +SADPE FAKNREL+VIH RWAM
Sbjct: 8 SIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAM 67
Query: 89 LGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVI 130
LG L C FKAGAQIFSEGGLDYL NP+LIHAQSILA+WA QV+
Sbjct: 68 LGALGCVFPELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 127
Query: 131 LMGAVGGYGTAGGPLGEVTDPL 152
LMG + GY GGPLGE DPL
Sbjct: 128 LMGLIEGYRVGGGPLGEGLDPL 149
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 110/158 (69%), Gaps = 22/158 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDY WDTA LSADP
Sbjct: 21 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADP 76
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 77 ETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 136
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
P+L+HAQSILA+WA+QV+LMG V GY GGPLGE D
Sbjct: 137 PNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD 174
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 109/158 (68%), Gaps = 22/158 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 87 ETFARNRELGVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
P+L+HAQSILA+WA QV+LMG V GY GGPLGE D
Sbjct: 147 PNLVHAQSILAIWASQVVLMGFVEGYRIGGGPLGEGLD 184
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 110/160 (68%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G +MR+T K P S WYG DR K+L P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 32 GRFSMRRTV-KAVPQSI---WYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 87
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 88 ETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGN 147
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+L+HAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 148 PNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPL 187
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 110/158 (69%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 30 ITMRRTV-KSVPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 85
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NP+
Sbjct: 86 FARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 145
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 146 LVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKV 183
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 110/162 (67%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+ MR+T + + S WYGPDR K+L P S P YLTGEFPGDYGWDTA LSA
Sbjct: 33 GEARTVMRRT----RASTPDSIWYGPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 88
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FAKNREL+VIH+RWAMLG L C FKAG+QIF EGGLDYL
Sbjct: 89 DPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGIKFGEAVWFKAGSQIFKEGGLDYL 148
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+L+HAQSILA+WA QVILMGAV GY GGPLGE D +
Sbjct: 149 GNPNLVHAQSILAIWASQVILMGAVEGYRVGGGPLGEGLDKI 190
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 101/162 (62%), Positives = 111/162 (68%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+G ITMR+T K P S WYG DR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GEGRITMRRTV-KSAPQSI---WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 87 DPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+L+HAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 147 GNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKI 188
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 110/160 (68%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ++MR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 32 GRVSMRRTI-KSAPESI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 87
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH RWAMLG L C FKAG+QIF EGGLDYL N
Sbjct: 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGN 147
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+L+HAQSILA+WA QV+LMGAV GY GGPLGE D L
Sbjct: 148 PNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQL 187
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 109/158 (68%), Gaps = 20/158 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+ MR+ A K PVSS S WYGPDRVKYL P SG P YLTGEFP G DPE
Sbjct: 34 VNMRRGATK-APVSS-SPWYGPDRVKYLGPFSGEPPSYLTGEFPVTTGGTPPVCQPDPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIHARWAMLG L C FKAG+QIFSEGGLDYL NPS
Sbjct: 92 FAKNRELEVIHARWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 151
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+WA QVILMGAV GY AGGPLGE+TDPL
Sbjct: 152 LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEITDPL 189
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 109/160 (68%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G I+M +T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 32 GRISMHRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 87
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 88 ETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 147
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+LIHAQSILA+WA QV+LMG + GY GGPLGE D +
Sbjct: 148 PNLIHAQSILAIWACQVVLMGFIEGYRVGGGPLGEGLDSI 187
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 110/160 (68%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEF GDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 87 ETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+L+HAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 147 PNLVHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKV 186
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 110/160 (68%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEF GDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 87 ETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 146
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+L+HAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 147 PNLVHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKV 186
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 109/160 (68%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G +MR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 32 GRASMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 87
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAG+QIF EGGLDYL N
Sbjct: 88 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFQEGGLDYLGN 147
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+LIHAQSILA+WA QV+LMG + GY GGPLGE D L
Sbjct: 148 PNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKL 187
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 109/160 (68%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G TMR+T K P S WYG DR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 33 GRATMRRTV-KSTPQSI---WYGADRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 89 ETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 148
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+L+HAQSILA+WA QV+LMG + GY GGPLGE D +
Sbjct: 149 PNLVHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKI 188
>gi|190694831|gb|ACE88963.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 181
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/160 (63%), Positives = 110/160 (68%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEF GDYGWDTA LSADP
Sbjct: 24 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADP 79
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL N
Sbjct: 80 ETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGN 139
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+L+HAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 140 PNLVHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKV 179
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 109/160 (68%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G MR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 32 GRFFMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 87
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 88 ETFARNRELEVIHSRWAMLGALGCVFPELLSKNGVQFGEAVWFKAGSQIFSEGGLDYLGN 147
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+L+HAQSILA+WA QV+LMG V GY GGPLGE D L
Sbjct: 148 PNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEDLDKL 187
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/162 (62%), Positives = 109/162 (67%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G TMR+T K P S WYG DR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GGGRATMRRTV-KSAPQSI---WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 87 DPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+LIHAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 147 GNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKI 188
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/160 (61%), Positives = 109/160 (68%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G +MR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 32 GRFSMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 87
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH+RWAMLG L C FKAG+QIF EGGLDYL N
Sbjct: 88 ETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFQEGGLDYLGN 147
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+LIHAQSILA+WA QV+LMG + GY GGPLGE D +
Sbjct: 148 PNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDKI 187
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/160 (61%), Positives = 109/160 (68%), Gaps = 26/160 (16%)
Query: 11 GCITMRKTAGKPKPVSSGSQ--WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G ITMR+T V S Q WYGPDR KYL P S P YLTG+FPGDYGWDTA LSA
Sbjct: 31 GRITMRRT------VKSAPQNIWYGPDRPKYLGPFSEQTPSYLTGKFPGDYGWDTAGLSA 84
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 85 DPETFARNRELEVIHSRWAMLGALGCFFPEILSKNGVNFGEAVWFKAGAQIFSEGGLDYL 144
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
NP+L+ QSILA+WA+QV+LMG V GY GGPLGE D
Sbjct: 145 GNPALVRPQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD 184
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/162 (61%), Positives = 109/162 (67%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G TMR+T K P S WYG DR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 31 GGGRATMRRTV-KSAPQSI---WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 87 DPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+L+HAQSILA+WA QV+LMG + GY GGPLGE D +
Sbjct: 147 GNPNLVHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDKI 188
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 108/160 (67%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G TMR+T K P S WYG DR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 33 GRATMRRTV-KSAPQSI---WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 89 ETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGN 148
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+LIHAQSILAVWA QV+LMG + GY GGPLGE D +
Sbjct: 149 PNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKI 188
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 100/160 (62%), Positives = 109/160 (68%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G +TMR+T K P S WYG DR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 5 GRVTMRRTV-KSAPQSI---WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 60
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+NREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 61 ETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGN 120
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+LIHAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 121 PNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKI 160
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/162 (61%), Positives = 109/162 (67%), Gaps = 22/162 (13%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+ ITMR+T K P S WYG DR KYL P S P Y TGEFPGDYGWDTA LSA
Sbjct: 31 GESRITMRRTV-KSAPQSI---WYGEDRPKYLGPFSEQTPSYSTGEFPGDYGWDTAGLSA 86
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE FA+NREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 87 DPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYL 146
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+L+HAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 147 GNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKI 188
>gi|397789260|gb|AFO67219.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 155
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/136 (69%), Positives = 102/136 (75%), Gaps = 21/136 (15%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++SE+ G G I+MRKTA KPVSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWD
Sbjct: 23 SSSELFGNGRISMRKTA---KPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 79
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSE
Sbjct: 80 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 139
Query: 105 GGLDYLENPSLIHAQS 120
GGLDYL NPSL+HAQS
Sbjct: 140 GGLDYLGNPSLVHAQS 155
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/155 (62%), Positives = 108/155 (69%), Gaps = 19/155 (12%)
Query: 17 KTAGKPKPVSSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAK 75
KTA K P SSG ++YGP+R K+L P S A P YLTGEFPGDYGWDTA LSADPE F +
Sbjct: 26 KTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKR 85
Query: 76 NRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIH 117
REL++IHARWAMLG L C FKAGAQIFSEGGLDYL NPSL+H
Sbjct: 86 YRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 145
Query: 118 AQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
AQ+I+A A+QVILMG V GY GGP GE DPL
Sbjct: 146 AQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPL 180
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/132 (71%), Positives = 100/132 (75%), Gaps = 18/132 (13%)
Query: 39 YLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC---- 94
YL P SG P YLTGEFPGDYGWDTA LSADPE FAKNREL+VIH RWAMLG L C
Sbjct: 1 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 60
Query: 95 --------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGT 140
FKAGAQIFSEGGLDYL NPSLIHAQSILA+WA+QV+LMGAV GY
Sbjct: 61 LLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI 120
Query: 141 AGGPLGEVTDPL 152
AGGPLGEVTDP+
Sbjct: 121 AGGPLGEVTDPI 132
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/143 (68%), Positives = 104/143 (72%), Gaps = 19/143 (13%)
Query: 29 SQW-YGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWA 87
S W +G +R YL P SG P YLTGEFPGDYGWDTA LSADPE FAKNREL+VIH RWA
Sbjct: 19 STWCFGFERYGYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 78
Query: 88 MLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
MLG L C FKAGAQIFSEGGLDYL NPSL+HAQSILA+WA QV
Sbjct: 79 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQV 138
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
ILMGAV GY AGGPLG+VT PL
Sbjct: 139 ILMGAVEGYRVAGGPLGKVTGPL 161
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/160 (61%), Positives = 108/160 (67%), Gaps = 22/160 (13%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G +TMR+T K P S WYG DR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 33 GRVTMRRTV-KSAPQSI---WYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 88
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FA+N EL+VIH RWAMLG L C FKAG+QIFSEGGLDYL N
Sbjct: 89 ETFARNLELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGN 148
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
P+LIHAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 149 PNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKI 188
>gi|60650129|dbj|BAD90930.1| chlorophyll a/b-binding protein [Adiantum capillus-veneris]
Length = 215
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/159 (60%), Positives = 106/159 (66%), Gaps = 18/159 (11%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G R PK SSG+ YG DR+ YL P SG P YLTGEFPGDYGWDTA LSADP
Sbjct: 36 GTSEARVQMMAPKKSSSGNIRYGADRLLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSADP 95
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAG+QIF++GGLDYL N
Sbjct: 96 ETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFADGGLDYLGN 155
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDP 151
PSL+HAQSILA+WA QVILMGAV GY A PL + P
Sbjct: 156 PSLVHAQSILAIWACQVILMGAVEGYRVAVVPLVRLRTP 194
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/167 (61%), Positives = 110/167 (65%), Gaps = 18/167 (10%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+S+ G T RK+A K SSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDT
Sbjct: 23 SSQELGASRFTTRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 82
Query: 64 ACLSADPEIFAKNRELK-------------VIHARWAMLGV-----LCCFKAGAQIFSEG 105
A LSADPE FAKN L+ V + + V LC FKAG+QIFSEG
Sbjct: 83 AGLSADPETFAKNVSLRSSTPDGPCWVPWDVSSQSFCPVTVLNSVKLCGFKAGSQIFSEG 142
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GLDYL NPSL QSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 143 GLDYLGNPSLGSRQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 189
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 97/155 (62%), Positives = 107/155 (69%), Gaps = 19/155 (12%)
Query: 17 KTAGKPKPVSSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAK 75
KTA K P SSG ++YGP+R K+L P S A P YLTGEFPGDYGWDTA LSADPE F +
Sbjct: 26 KTAAKSAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKR 85
Query: 76 NRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIH 117
REL++IHARWAMLG L C FKAGAQIFSEGGLDYL NPSL+H
Sbjct: 86 YRELELIHARWAMLGALGCLTPELLAKNGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 145
Query: 118 AQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
AQ+I+A A QVILMG V GY GGP GE DPL
Sbjct: 146 AQNIVATLACQVILMGLVEGYRVNGGPAGEGLDPL 180
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/137 (67%), Positives = 100/137 (72%), Gaps = 18/137 (13%)
Query: 32 YGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
YGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE FA+NREL+VIH+RWAMLG
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 63
Query: 92 LCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMG 133
L C FKAGAQIFSEGGLDYL NP+L+HAQSILA+WA+QV+LMG
Sbjct: 64 LGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 123
Query: 134 AVGGYGTAGGPLGEVTD 150
V GY GGPLGE D
Sbjct: 124 FVEGYRVGGGPLGEGLD 140
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/137 (67%), Positives = 99/137 (72%), Gaps = 18/137 (13%)
Query: 32 YGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
YGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE FAKNREL+VIH+RWAMLG
Sbjct: 4 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 63
Query: 92 LCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMG 133
L C FKAGAQIFSEGGLDYL NP+L+HAQSILA+WA QV+LMG
Sbjct: 64 LGCVFPEILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMG 123
Query: 134 AVGGYGTAGGPLGEVTD 150
+ GY GGPLGE D
Sbjct: 124 FIEGYRVGGGPLGEGLD 140
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/167 (57%), Positives = 109/167 (65%), Gaps = 20/167 (11%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
A+E+ K + + SSGS WYGPDR +L P SG P YL GEFPGDYGWDT
Sbjct: 21 ANELAQKVGSNQARVVMRGSKSSSGSMWYGPDRPLFLGPFSGNTPSYLKGEFPGDYGWDT 80
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSE 104
A LSADPE FA+NR L++IH RWAMLG L C FKAGAQIFS+
Sbjct: 81 AGLSADPESFARNRALELIHGRWAMLGALGCITPELLQKYSRVTLKEPVWFKAGAQIFSD 140
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
GGLDYL NP+LIHAQSILAVWA+QV+LMGAV Y T G P +GE D
Sbjct: 141 GGLDYLGNPNLIHAQSILAVWAVQVVLMGAVEAYRTNGLPGVGEGGD 187
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/158 (63%), Positives = 105/158 (66%), Gaps = 22/158 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
TM K A K K SS RVKYL P SG P YLTGEFPGDYGWDTA LSA PE
Sbjct: 39 FTMLKHAAKSKVSSSTCD----RRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPET 94
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+R AM L C FKAGAQIFSEGGLDYL NPS
Sbjct: 95 FAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPS 154
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSILA+W +VILMGAV GY A GPLGEVTDPL
Sbjct: 155 LVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPL 192
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 107/162 (66%), Gaps = 19/162 (11%)
Query: 10 KGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSAD 69
+ +R T + + +++YGPDRVK+L P SG P YL GE+PGDYGWDTA LSAD
Sbjct: 7 RSIAAVRPTRATRQVTRASAEFYGPDRVKFLGPFSGATPSYLKGEYPGDYGWDTAGLSAD 66
Query: 70 PEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYL 110
PE F++ REL+VIHARWAMLG L C FKAGAQIF +GGLDYL
Sbjct: 67 PETFSRYRELEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYL 126
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
N +L+HAQSI+AV Q++LMG + GY GGP GE+TDP+
Sbjct: 127 GNANLVHAQSIVAVLLTQIVLMGLIEGYRVNGGPAGEITDPI 168
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/155 (61%), Positives = 105/155 (67%), Gaps = 21/155 (13%)
Query: 17 KTAGKPKPVSSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAK 75
KT KP P SG +WYGP+R K+L P S A P YLTGEFPGDYGWDTA LSADPE F +
Sbjct: 26 KTVAKPAP--SGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKR 83
Query: 76 NRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIH 117
REL++IHARWAMLG L C FKAGAQIF EGGLDYL NPSL+H
Sbjct: 84 YRELELIHARWAMLGALGCVTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVH 143
Query: 118 AQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
AQ+I+A A QVILMG V GY GGP GE DPL
Sbjct: 144 AQNIVATLACQVILMGLVEGYRVNGGPAGEGLDPL 178
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 112/172 (65%), Gaps = 22/172 (12%)
Query: 1 SLAASEIHGKGCIT-MRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDY 59
+ +++ K +T MR+T + K + S WYGPDR ++L P SG P YLTGEFPGDY
Sbjct: 8 TFVGTQVASKKMVTSMRRT--QKKGSAPDSVWYGPDRPQFLGPFSGDTPSYLTGEFPGDY 65
Query: 60 GWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQ 100
GWDTA LSADPE F + REL++IHARWAMLG L C FKAG+Q
Sbjct: 66 GWDTAGLSADPETFRRYRELELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQ 125
Query: 101 IFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
IF EGGLDYL N +L+HAQSILA+ QV+LMGA+ Y GGPLGE DPL
Sbjct: 126 IFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRVNGGPLGEGLDPL 177
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/129 (69%), Positives = 97/129 (75%), Gaps = 18/129 (13%)
Query: 42 PLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------- 94
P SG P YLTGEFPGDYGWDTA LSADPE FAKNREL+VIH+ WAMLG L C
Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLS 60
Query: 95 -----------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGG 143
FKAG+QIFSEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGG
Sbjct: 61 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 120
Query: 144 PLGEVTDPL 152
PLGEVTDP+
Sbjct: 121 PLGEVTDPI 129
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 110/170 (64%), Gaps = 21/170 (12%)
Query: 2 LAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGW 61
+ + ++ K +MR+T + K + S WYGPDR ++L P SG P YLTGEFPGDYGW
Sbjct: 10 VGSKPVNKKMVTSMRRT--QKKSSAPDSVWYGPDRPQFLGPFSGDCPSYLTGEFPGDYGW 67
Query: 62 DTACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIF 102
DTA LSADPE F + RE ++IHARWAMLG L C FKAG+QIF
Sbjct: 68 DTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIF 127
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
EGGLDYL N +L+HAQSILA+ QV+LMGA+ Y GGPLGE DPL
Sbjct: 128 QEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRVNGGPLGEGLDPL 177
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/162 (56%), Positives = 106/162 (65%), Gaps = 20/162 (12%)
Query: 10 KGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSAD 69
K ++T P S+G +WYGPDR K+L P S P YLTGEFPGDYGWDTA LSAD
Sbjct: 19 KKAAGTKQTKAAPAK-SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSAD 77
Query: 70 PEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYL 110
PE F K REL+VIHARWA+LG L FKAGAQIFSEGGLDYL
Sbjct: 78 PETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYL 137
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
+P+LIHAQ+I+A A+QV+LMG + GY GGP GE DPL
Sbjct: 138 GSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPL 179
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 111/172 (64%), Gaps = 22/172 (12%)
Query: 1 SLAASEIHGKGCIT-MRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDY 59
+ S++ K +T MR+T + K + + WYGPDR ++L P SG P YLTGEFPGDY
Sbjct: 8 TFIGSQVANKKMVTSMRRT--QKKSSAPDNVWYGPDRPQFLGPFSGDCPSYLTGEFPGDY 65
Query: 60 GWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQ 100
GWDTA LSADPE F + RE ++IHARWAMLG L C FKAG+Q
Sbjct: 66 GWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQ 125
Query: 101 IFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
IF EGGLDYL N +L+HAQSILA+ QV+LMGA+ Y GGPLGE DPL
Sbjct: 126 IFQEGGLDYLGNSNLVHAQSILAILGCQVLLMGAIEAYRVNGGPLGEGLDPL 177
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 103/146 (70%), Gaps = 19/146 (13%)
Query: 26 SSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
SSG ++YGP+R K+L P S A P YLTGEFPGDYGWDTA LSADPE F + REL++IHA
Sbjct: 31 SSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 90
Query: 85 RWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
RWAMLG L C FKAGAQIFSEGGLDYL NPSL+HAQ+I+A A
Sbjct: 91 RWAMLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLA 150
Query: 127 IQVILMGAVGGYGTAGGPLGEVTDPL 152
+QVILMG + GY GGP GE DPL
Sbjct: 151 VQVILMGLIEGYRVNGGPAGEGLDPL 176
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/153 (60%), Positives = 101/153 (66%), Gaps = 20/153 (13%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNR 77
+ G K + S WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FAKNR
Sbjct: 32 SMGNGKYIMSNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNR 91
Query: 78 ELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHA 118
L+VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+L+HA
Sbjct: 92 ALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 151
Query: 119 QSILAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
QSILAV QV+LMG V G+ G P +GE D
Sbjct: 152 QSILAVLGFQVVLMGLVEGFRINGLPGVGEGND 184
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/146 (63%), Positives = 101/146 (69%), Gaps = 19/146 (13%)
Query: 26 SSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
SSG +WYGP+R K+L P S A P YLTGEFPGDYGWDTA LSADPE F + REL++IHA
Sbjct: 32 SSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 85 RWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
RWAMLG L C FKAGAQIF EGGLDYL NPSL+HAQ+I+A A
Sbjct: 92 RWAMLGALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLA 151
Query: 127 IQVILMGAVGGYGTAGGPLGEVTDPL 152
QVILMG V GY GGP GE DPL
Sbjct: 152 CQVILMGLVEGYRVNGGPAGEGLDPL 177
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/146 (63%), Positives = 101/146 (69%), Gaps = 19/146 (13%)
Query: 26 SSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
SSG +WYGP+R K+L P S A P YLTGEFPGDYGWDTA LSADPE F + REL++IHA
Sbjct: 32 SSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 85 RWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
RWAMLG L C FKAGAQIF EGGLDYL NPSL+HAQ+I+A A
Sbjct: 92 RWAMLGALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLA 151
Query: 127 IQVILMGAVGGYGTAGGPLGEVTDPL 152
QVILMG V GY GGP GE DPL
Sbjct: 152 CQVILMGLVEGYRVNGGPAGEGLDPL 177
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 103/146 (70%), Gaps = 19/146 (13%)
Query: 26 SSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
SSG ++YGP+R K+L P S A P YLTGEFPGDYGWDTA LSADPE F + REL++IHA
Sbjct: 31 SSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 90
Query: 85 RWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
RWAMLG L C FKAGAQIFSEGGLDYL NPSL+HAQ+I+A A
Sbjct: 91 RWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSA 150
Query: 127 IQVILMGAVGGYGTAGGPLGEVTDPL 152
+QVILMG + GY GGP GE DPL
Sbjct: 151 VQVILMGLIEGYRVNGGPAGEGLDPL 176
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/160 (59%), Positives = 105/160 (65%), Gaps = 21/160 (13%)
Query: 13 ITMRKTAGKPKPVSS--GSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
+ R+T KP SS S WYGPDR +L +G P YLTGEFPGDYGWDTA LSADP
Sbjct: 22 VEARRTV-KPAAKSSTPDSFWYGPDRPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADP 80
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E F + REL++IHARWAMLG L C FKAGAQIF EGGLDYL N
Sbjct: 81 ETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGESVWFKAGAQIFQEGGLDYLGN 140
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
PSL+HAQSILA+ QVILMGA+ GY GGPLGE D L
Sbjct: 141 PSLVHAQSILAILGTQVILMGAIEGYRVNGGPLGEGLDKL 180
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/146 (63%), Positives = 101/146 (69%), Gaps = 19/146 (13%)
Query: 26 SSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
SSG +WYGP+R K+L P S A P YLTGEFPGDYGWDTA LSADPE F + REL++IHA
Sbjct: 32 SSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 85 RWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
RWAMLG L C FKAGAQIF EGGLDYL NPSL+HAQ+I+A A
Sbjct: 92 RWAMLGALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLA 151
Query: 127 IQVILMGAVGGYGTAGGPLGEVTDPL 152
QVILMG V GY GGP GE DPL
Sbjct: 152 CQVILMGLVEGYRVNGGPAGEGLDPL 177
>gi|157267420|gb|ABV26426.1| light-harvesting chlorophyll a/b-binding protein [Camellia
sinensis]
Length = 153
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/138 (66%), Positives = 99/138 (71%), Gaps = 20/138 (14%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S + ++ G+G I+MRKT GKP V SGS WYGPDRV YL PLSG P YLTGEFPGDYG
Sbjct: 18 SPSTPDLVGRGRISMRKTGGKP--VRSGSPWYGPDRVLYLGPLSGDPPSYLTGEFPGDYG 75
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE F+KNREL+VIH RWAMLG L C FKAGAQIF
Sbjct: 76 WDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIF 135
Query: 103 SEGGLDYLENPSLIHAQS 120
SEGGLDYL NPSLIHAQS
Sbjct: 136 SEGGLDYLGNPSLIHAQS 153
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 109/174 (62%), Gaps = 25/174 (14%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQ----WYGPDRVKYLDPLSGGAPFYLTGEFP 56
SLA + + R+T KP S S WYGP+R +L +G P YLTGEFP
Sbjct: 9 SLAPRCLASTVKVEARRTV---KPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFP 65
Query: 57 GDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAG 98
GDYGWDTA LSADPE F + REL++IHARWAMLG L C FKAG
Sbjct: 66 GDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAG 125
Query: 99 AQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
AQIFSEGGLDYL NPSL+HAQ+I+A A+QVILMG V GY GGP GE DPL
Sbjct: 126 AQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPL 179
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/146 (61%), Positives = 102/146 (69%), Gaps = 19/146 (13%)
Query: 26 SSGSQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
SSG ++YGP+R K+L P S P YLTGEFPGDYGWDTA LSADPE F + REL++IHA
Sbjct: 32 SSGVEFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 85 RWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
RWAMLG L C FKAGAQIFSEGGLDYL NPSL+HAQ+I+A A
Sbjct: 92 RWAMLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLA 151
Query: 127 IQVILMGAVGGYGTAGGPLGEVTDPL 152
+QVILMG + GY GGP GE DPL
Sbjct: 152 VQVILMGLIEGYRVNGGPAGEGLDPL 177
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/146 (61%), Positives = 102/146 (69%), Gaps = 19/146 (13%)
Query: 26 SSGSQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
SSG ++YGP+R K+L P S P YLTGEFPGDYGWDTA LSADPE F + REL++IHA
Sbjct: 32 SSGVEFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 85 RWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
RWAMLG L C FKAGAQIFSEGGLDYL NPSL+HAQ+I+A A
Sbjct: 92 RWAMLGALGCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLA 151
Query: 127 IQVILMGAVGGYGTAGGPLGEVTDPL 152
+QVILMG + GY GGP GE DPL
Sbjct: 152 VQVILMGLIEGYRVNGGPAGEGLDPL 177
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/146 (61%), Positives = 102/146 (69%), Gaps = 19/146 (13%)
Query: 26 SSGSQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
SSG ++YGP+R K+L P S P YLTGEFPGDYGWDTA LSADPE F + REL++IHA
Sbjct: 32 SSGVEFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 85 RWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
RWAMLG L C FKAGAQIFSEGGLDYL NPSL+HAQ+I+A A
Sbjct: 92 RWAMLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLA 151
Query: 127 IQVILMGAVGGYGTAGGPLGEVTDPL 152
+QVILMG + GY GGP GE DPL
Sbjct: 152 VQVILMGLIEGYRVNGGPAGEGLDPL 177
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 97/144 (67%), Gaps = 20/144 (13%)
Query: 27 SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
S WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FA+NR L+VIH RW
Sbjct: 45 SNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRW 104
Query: 87 AMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAI 127
AMLG L C FKAGAQIFSEGGLDYL NP+L+HAQSILAV
Sbjct: 105 AMLGALGCITPEVLQKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 164
Query: 128 QVILMGAVGGYGTAGGP-LGEVTD 150
QVILMG V GY G P +GE D
Sbjct: 165 QVILMGLVEGYRINGLPGVGEGND 188
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 171 bits (434), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/145 (62%), Positives = 98/145 (67%), Gaps = 18/145 (12%)
Query: 26 SSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
SSG+ WYGP+R K+L P S P YLTGEF GDYGWDTA LSADPE F + REL++IHAR
Sbjct: 35 SSGTSWYGPERAKWLGPFSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHAR 94
Query: 86 WAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAI 127
WAMLG L C FKAGAQIF EGGL+YL N SLIHAQSILA A
Sbjct: 95 WAMLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLAC 154
Query: 128 QVILMGAVGGYGTAGGPLGEVTDPL 152
QVILMG V GY GGP GE DPL
Sbjct: 155 QVILMGLVEGYRVNGGPAGEGLDPL 179
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/151 (60%), Positives = 99/151 (65%), Gaps = 20/151 (13%)
Query: 20 GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
G PK WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FAKNR L
Sbjct: 36 GTPKFTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRAL 95
Query: 80 KVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQS 120
+VIH RWAMLG L C FKAG+QIFSEGGLDYL NP+L+HAQS
Sbjct: 96 EVIHGRWAMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQS 155
Query: 121 ILAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
ILAV Q++LMG V G+ G P +GE D
Sbjct: 156 ILAVLGFQIVLMGLVEGFRINGLPDVGEGND 186
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 108/170 (63%), Gaps = 21/170 (12%)
Query: 2 LAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGW 61
+ + + K +MR+T + K + S WYGP+R ++L P SG P YLTGEFPGDYGW
Sbjct: 10 IGSQAVTTKKVTSMRRT--QKKSSAPDSVWYGPERPQFLGPFSGDCPSYLTGEFPGDYGW 67
Query: 62 DTACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIF 102
DTA LSADPE F + RE ++IHARWAMLG L C FKAG+QIF
Sbjct: 68 DTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILAKYGGVSFGESVWFKAGSQIF 127
Query: 103 SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
EGGLDYL N SL+HAQ ILA+ QV+LMGA+ Y GGPLGE DPL
Sbjct: 128 QEGGLDYLGNSSLVHAQYILAILGCQVLLMGAIEAYRVNGGPLGEGLDPL 177
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 97/144 (67%), Gaps = 20/144 (13%)
Query: 27 SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
S WYGPDR+KYL P S P YLTGEFPGDYGWDTA LSADPE FA+NR L+VIH RW
Sbjct: 45 SNDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRW 104
Query: 87 AMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAI 127
AMLG L C FKAGAQIFSEGGLDYL NP+L+HAQSILAV
Sbjct: 105 AMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 164
Query: 128 QVILMGAVGGYGTAGGP-LGEVTD 150
QVILMG V GY G P +GE D
Sbjct: 165 QVILMGLVEGYRINGLPGVGEGND 188
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 107/168 (63%), Gaps = 25/168 (14%)
Query: 10 KGCITMRKTAGKP-----KPVSSGS-QWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+ +T R A KP + V+ S +WYGP+R ++L P SG P YL GE+PGDYGWDT
Sbjct: 2 QAALTQRLAAVKPSGRATRQVTRASVEWYGPNRPQFLGPFSGSTPSYLKGEYPGDYGWDT 61
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSE 104
A LSADPE FA+ REL+VIHARWAMLG L C FKAGAQIF E
Sbjct: 62 AGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQE 121
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSI+AV Q+ LMG + GY GGP GE D L
Sbjct: 122 GGLDYLGNPSLIHAQSIVAVLLTQLTLMGLIEGYRVNGGPAGEGLDAL 169
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/153 (60%), Positives = 100/153 (65%), Gaps = 20/153 (13%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNR 77
+ G K + WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FAKNR
Sbjct: 32 SMGNGKYIMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNR 91
Query: 78 ELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHA 118
L+VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+L+HA
Sbjct: 92 ALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 151
Query: 119 QSILAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
QSILAV QV+LMG V G+ G P +GE D
Sbjct: 152 QSILAVLGFQVVLMGLVEGFRINGLPGVGEGND 184
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 97/144 (67%), Gaps = 20/144 (13%)
Query: 27 SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
S WYGPDR+KYL P S P YLTGEFPGDYGWDTA LSADPE FA+NR L+VIH RW
Sbjct: 45 SNDLWYGPDRLKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRW 104
Query: 87 AMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAI 127
AMLG L C FKAGAQIFSEGGLDYL NP+L+HAQSILAV
Sbjct: 105 AMLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 164
Query: 128 QVILMGAVGGYGTAGGP-LGEVTD 150
QVILMG V GY G P +GE D
Sbjct: 165 QVILMGLVEGYRINGLPGVGEGND 188
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/180 (52%), Positives = 107/180 (59%), Gaps = 29/180 (16%)
Query: 5 SEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
S + + + G K WYGPDRVKYL P S P YLTGEFPGDYGWDTA
Sbjct: 17 SRVSAASQLRNVASVGNGKLTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTA 76
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEG 105
LSADPE FA+NR L+VIH RWAMLG L C FKAGAQIFS+G
Sbjct: 77 GLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVNVNFKEPVWFKAGAQIFSQG 136
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGY------GTAGG----PLGEVTDPLSLS 155
GLDYL NP+L+HAQSILAV QV+LMGAV G+ G G P G+ DPL L+
Sbjct: 137 GLDYLGNPNLVHAQSILAVLGFQVLLMGAVEGFRINGLDGVGNGNDLYPGGQYFDPLGLA 196
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 99/142 (69%), Gaps = 18/142 (12%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
S +YGPDR +L PLSG P YLTGEFPGDYGWD+A LSADPE F + REL++IHARWAM
Sbjct: 50 SAFYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAM 109
Query: 89 LGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVI 130
LG L C FKAGAQIF+EGGLDYL NP L+HAQSILA A+QVI
Sbjct: 110 LGALGCITPELLAKNGTPIVEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSILATLAVQVI 169
Query: 131 LMGAVGGYGTAGGPLGEVTDPL 152
LMGA+ GY GGP GE D L
Sbjct: 170 LMGAIEGYRVNGGPAGEGLDKL 191
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 101/165 (61%), Gaps = 29/165 (17%)
Query: 20 GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
G PK WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FAKNR L
Sbjct: 36 GSPKYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRAL 95
Query: 80 KVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQS 120
+VIH RWAMLG C FKAG+QIFSEGGLDYL NP+L+HAQS
Sbjct: 96 EVIHGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQS 155
Query: 121 ILAVWAIQVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
ILAV QVILMG V G+ G P G+ DPL L+
Sbjct: 156 ILAVLGFQVILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLA 200
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 107/167 (64%), Gaps = 29/167 (17%)
Query: 15 MRKTAGKPKPVSSGS---------QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTA 64
+R T+ +P PV S + +WYGPDR K+L P S G P YLTGEFPGDYGWDTA
Sbjct: 9 VRSTSVRPTPVGSRAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTA 68
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEG 105
LSADPE F + REL++IHARWAMLG L C FKAGAQIF+EG
Sbjct: 69 GLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEG 128
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GL+YL N +L+HAQSI+A A QV++MG Y GGPLGE DPL
Sbjct: 129 GLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL 175
>gi|515616|emb|CAA43802.1| LHC II Type III chlorophyll a /b binding protein [Brassica napus]
Length = 202
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 103/167 (61%), Gaps = 29/167 (17%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNR 77
+ G PK WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FAKNR
Sbjct: 34 SLGSPKYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNR 93
Query: 78 ELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHA 118
L+VIH RWAMLG L C FKAG+QIFSEGGLDYL NP+L+HA
Sbjct: 94 ALEVIHGRWAMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 153
Query: 119 QSILAVWAIQVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
QSILAV QVILMG V G+ G P G+ DPL L+
Sbjct: 154 QSILAVLGFQVILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLA 200
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 101/165 (61%), Gaps = 29/165 (17%)
Query: 20 GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
G PK WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FAKNR L
Sbjct: 36 GSPKYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRAL 95
Query: 80 KVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQS 120
+VIH RWAMLG C FKAG+QIFSEGGLDYL NP+L+HAQS
Sbjct: 96 EVIHGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQS 155
Query: 121 ILAVWAIQVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
ILAV QVILMG V G+ G P G+ DPL L+
Sbjct: 156 ILAVLGFQVILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLA 200
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 101/165 (61%), Gaps = 29/165 (17%)
Query: 20 GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
G PK WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FAKNR L
Sbjct: 36 GSPKYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRAL 95
Query: 80 KVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQS 120
+VIH RWAMLG C FKAG+QIFSEGGLDYL NP+L+HAQS
Sbjct: 96 EVIHGRWAMLGAFGCITPEVLQKWVRVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQS 155
Query: 121 ILAVWAIQVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
ILAV QVILMG V G+ G P G+ DPL L+
Sbjct: 156 ILAVLGFQVILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLA 200
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 102/167 (61%), Gaps = 22/167 (13%)
Query: 6 EIHGKGCITMRKTA--GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+ G +R+ G K WYGPDRVKYL P S P YLTGEFPGDYGWDT
Sbjct: 24 QTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDT 83
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSE 104
A LSADPE FA+NR L+VIH RWAMLG C FKAGAQIFSE
Sbjct: 84 AGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSE 143
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
GGLDYL NP+L+HAQSILAV QV+LMG V GY G P +GE D
Sbjct: 144 GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGEGND 190
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 99/142 (69%), Gaps = 18/142 (12%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
SQ+YGP+R +L PLSG AP YLTGEFPGDYGWD+A LS+DPE F + REL++IHARWAM
Sbjct: 51 SQFYGPERALWLGPLSGSAPSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAM 110
Query: 89 LGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVI 130
LG L C FKAGAQIF EGGLDYL NP L+HAQSILA A QVI
Sbjct: 111 LGALGCVTPELLAKNGTPIAEPVWFKAGAQIFQEGGLDYLGNPGLVHAQSILATLACQVI 170
Query: 131 LMGAVGGYGTAGGPLGEVTDPL 152
LMGA+ G+ GGP GE D L
Sbjct: 171 LMGAIEGFRVNGGPAGEGLDKL 192
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/144 (62%), Positives = 99/144 (68%), Gaps = 19/144 (13%)
Query: 28 GSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
G +WYGP+R K+L P S A P YLTGEFPGDYGWDTA LSADPE F + REL++IHARW
Sbjct: 34 GIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 87 AMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQ 128
AMLG L C FKAGAQIF EGGLDYL NPSL+HAQ+I+A A Q
Sbjct: 94 AMLGALGCVTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQ 153
Query: 129 VILMGAVGGYGTAGGPLGEVTDPL 152
VILMG V GY GGP GE DPL
Sbjct: 154 VILMGLVEGYRVNGGPAGEGLDPL 177
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 102/167 (61%), Gaps = 22/167 (13%)
Query: 6 EIHGKGCITMRKTA--GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+ G +R+ G K WYGPDRVKYL P S P YLTGEFPGDYGWDT
Sbjct: 24 QTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDT 83
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSE 104
A LSADPE FA+NR L+VIH RWAMLG C FKAGAQIFSE
Sbjct: 84 AGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSE 143
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
GGLDYL NP+L+HAQSILAV QV+LMG V GY G P +GE D
Sbjct: 144 GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGEGND 190
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/162 (56%), Positives = 104/162 (64%), Gaps = 25/162 (15%)
Query: 13 ITMRKTAGKPKPVSSGSQ----WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
+ R+T KP S S WYGP+R +L +G P YLTGEFPGDYGWDTA LSA
Sbjct: 22 VEARRTV---KPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSA 78
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE F + REL++IHARWAMLG L C FKAGAQIF EGGLDYL
Sbjct: 79 DPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYL 138
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+L+HAQSILA+ QV+LMGA+ GY GGPLGE D L
Sbjct: 139 GNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKL 180
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 101/167 (60%), Gaps = 29/167 (17%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNR 77
+ G K WYGPDRVKYL P S P YL GEFPGDYGWDTA LSADPE FAKNR
Sbjct: 36 SMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNR 95
Query: 78 ELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHA 118
L+VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+L+HA
Sbjct: 96 ALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 155
Query: 119 QSILAVWAIQVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
QSILAV QVILMG V GY G P G+ DPL L+
Sbjct: 156 QSILAVLGFQVILMGLVEGYRINGLDGVGEGNDLYPGGQYFDPLGLA 202
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 101/167 (60%), Gaps = 29/167 (17%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNR 77
+ G K WYGPDRVKYL P S P YL GEFPGDYGWDTA LSADPE FAKNR
Sbjct: 37 SMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNR 96
Query: 78 ELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHA 118
L+VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+L+HA
Sbjct: 97 ALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 156
Query: 119 QSILAVWAIQVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
QSILAV QVILMG V GY G P G+ DPL L+
Sbjct: 157 QSILAVLGFQVILMGLVEGYRINGLDGVGEGNDLYPGGQYFDPLGLA 203
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/154 (59%), Positives = 99/154 (64%), Gaps = 29/154 (18%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FA+NR L+VIH RWAMLG
Sbjct: 51 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 110
Query: 91 VLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVIL 131
L C FKAGAQIFSEGGLDYL NP+L+HAQSILAV QVIL
Sbjct: 111 ALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVIL 170
Query: 132 MGAVGGYGTAG----------GPLGEVTDPLSLS 155
MG V G+ G P G+ DPL L+
Sbjct: 171 MGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLA 204
>gi|397789264|gb|AFO67221.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 152
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/131 (67%), Positives = 95/131 (72%), Gaps = 19/131 (14%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++SE+ G G I+MRKT KP SSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWD
Sbjct: 23 SSSELFGNGRISMRKTGKKPV-ASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 81
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAGAQIFSE
Sbjct: 82 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 141
Query: 105 GGLDYLENPSL 115
GGLDYL NPSL
Sbjct: 142 GGLDYLGNPSL 152
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 98/160 (61%), Gaps = 21/160 (13%)
Query: 6 EIHGKGCITMRKTA--GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+ G +R+ G K WYGPDRVKYL P S P YLTGEFPGDYGWDT
Sbjct: 24 QTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDT 83
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSE 104
A LSADPE FA+NR L+VIH RWAMLG C FKAGAQIFSE
Sbjct: 84 AGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSE 143
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGP 144
GGLDYL NP+L+HAQSILAV QV+LMG V GY G P
Sbjct: 144 GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP 183
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/154 (59%), Positives = 99/154 (64%), Gaps = 29/154 (18%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FA+NR L+VIH RWAMLG
Sbjct: 50 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
Query: 91 VLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVIL 131
L C FKAGAQIFSEGGLDYL NP+L+HAQSILAV QVIL
Sbjct: 110 ALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVIL 169
Query: 132 MGAVGGYGTAG----------GPLGEVTDPLSLS 155
MG V G+ G P G+ DPL L+
Sbjct: 170 MGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLA 203
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/151 (59%), Positives = 98/151 (64%), Gaps = 20/151 (13%)
Query: 20 GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
G K WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FAKNR L
Sbjct: 36 GTSKFTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRAL 95
Query: 80 KVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQS 120
+VIH RWAMLG L C FKAG+QIFSEGGLDYL NP+L+HAQS
Sbjct: 96 EVIHGRWAMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQS 155
Query: 121 ILAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
ILAV Q++LMG V G+ G P +GE D
Sbjct: 156 ILAVLGFQIVLMGLVEGFRINGLPDVGEGND 186
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 101/165 (61%), Gaps = 29/165 (17%)
Query: 20 GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
G K S WYGPDRVKYL P S P YL GEFPGDYGWDTA LSADPE FA+NR L
Sbjct: 35 GNGKFTMSNELWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRAL 94
Query: 80 KVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQS 120
+VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+L+HAQS
Sbjct: 95 EVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQS 154
Query: 121 ILAVWAIQVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
ILAV QV+LMG V G+ G P G+ DPL L+
Sbjct: 155 ILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLA 199
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 98/160 (61%), Gaps = 21/160 (13%)
Query: 6 EIHGKGCITMRKTA--GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+ G +R+ G K WYGPDRVKYL P S P YLTGEFPGDYGWDT
Sbjct: 19 QTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDT 78
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSE 104
A LSADPE FA+NR L+VIH RWAMLG C FKAGAQIFSE
Sbjct: 79 AGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSE 138
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGP 144
GGLDYL NP+L+HAQSILAV QV+LMG V GY G P
Sbjct: 139 GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLP 178
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 96/144 (66%), Gaps = 20/144 (13%)
Query: 27 SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
S WYGPDRVKYL P S P YLTGEF GDYGWDTA LSADPE FA+NR L+VIH RW
Sbjct: 45 SNDLWYGPDRVKYLGPFSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRW 104
Query: 87 AMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAI 127
AMLG L C FKAGAQIFSEGGLDYL NP+L+HAQSILAV
Sbjct: 105 AMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 164
Query: 128 QVILMGAVGGYGTAGGP-LGEVTD 150
QVILMG V GY G P +GE D
Sbjct: 165 QVILMGLVEGYRINGLPGVGEGND 188
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/160 (56%), Positives = 100/160 (62%), Gaps = 21/160 (13%)
Query: 6 EIHGKGCITMRK--TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
+ G T+R + G K WYGPDRVKYL P S P YLTGEFPGDYGWDT
Sbjct: 25 QTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDT 84
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSE 104
A LSADPE FAKNR L+VIH RWAMLG L C FKAG+QIFSE
Sbjct: 85 AGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSE 144
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGP 144
GGLDYL NP+L+HAQSILAV QV+LMG V G+ G P
Sbjct: 145 GGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLP 184
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/154 (59%), Positives = 99/154 (64%), Gaps = 29/154 (18%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FA+NR L+VIH RWAMLG
Sbjct: 54 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 113
Query: 91 VLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVIL 131
L C FKAGAQIFSEGGLDYL NP+L+HAQSILAV QVIL
Sbjct: 114 ALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVIL 173
Query: 132 MGAVGGYGTAG----------GPLGEVTDPLSLS 155
MG V G+ G P G+ DPL L+
Sbjct: 174 MGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLA 207
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/153 (58%), Positives = 99/153 (64%), Gaps = 20/153 (13%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNR 77
+ G K + WYGPDRVKYL P S P YL GEFPGDYGWDTA LSADPE FA+NR
Sbjct: 37 SMGNGKYIMGNELWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNR 96
Query: 78 ELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHA 118
L+VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+L+HA
Sbjct: 97 ALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 156
Query: 119 QSILAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
QSILAV QV+LMG V G+ G P +GE D
Sbjct: 157 QSILAVLGFQVVLMGLVEGFRINGLPGVGEGND 189
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/162 (56%), Positives = 104/162 (64%), Gaps = 25/162 (15%)
Query: 13 ITMRKTAGKPKPVSSGSQ----WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
+ R+T KP S S WYGP+R +L +G P YLTGEFPGDYGWDTA LSA
Sbjct: 22 VEARRTV---KPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSA 78
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE F + REL++IHARWAMLG L C FKAGAQIF EGGLDYL
Sbjct: 79 DPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYL 138
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NP+L+HAQSILA+ QV+LMGA+ GY GGPLGE D L
Sbjct: 139 GNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKL 180
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/158 (58%), Positives = 104/158 (65%), Gaps = 22/158 (13%)
Query: 12 CITMRKTA-GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
MR+T GK P S WYG DR K+L P SG P YL+GE+PGDYGWDTA LSADP
Sbjct: 2 TTVMRRTVKGKTTPTS---MWYGEDRPKWLGPFSGNTPSYLSGEYPGDYGWDTAGLSADP 58
Query: 71 EIFAKNRELKVIHARWAMLGVLCCF------------------KAGAQIFSEGGLDYLEN 112
E FAK RE++VIHARWAMLG L C KAGAQIF+ GGLDYL N
Sbjct: 59 ETFAKYREIEVIHARWAMLGALGCLTPELLAKNGVSFGEAVWWKAGAQIFAPGGLDYLGN 118
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
PSL+HAQSI+A+ A QV+LMGA+ GY GGP GE D
Sbjct: 119 PSLVHAQSIIAILASQVLLMGAIEGYRVYGGPGGEGLD 156
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 100/146 (68%), Gaps = 19/146 (13%)
Query: 26 SSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
SSG +WYGP+R K+L P S A P YLTGEFPGDYGWDTA LSADPE F + REL++IHA
Sbjct: 32 SSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 85 RWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
RWAMLG L C FKAGAQIF EGGLDYL N SL+HAQ+I+A A
Sbjct: 92 RWAMLGALGCVTPKLLSKNGVQFSEALWFKAGAQIFQEGGLDYLGNLSLVHAQNIVATLA 151
Query: 127 IQVILMGAVGGYGTAGGPLGEVTDPL 152
QVILMG V GY GGP GE DPL
Sbjct: 152 CQVILMGLVEGYRVNGGPAGEGLDPL 177
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 102/167 (61%), Gaps = 29/167 (17%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNR 77
+ G K S WYGPDRVKYL P S P YL GEFPGDYGWDTA LSADPE FAKNR
Sbjct: 38 SMGSGKYSMSNELWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNR 97
Query: 78 ELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHA 118
L+VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+L+HA
Sbjct: 98 ALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 157
Query: 119 QSILAVWAIQVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
QSILAV QV+LMG V G+ G P G+ DPL L+
Sbjct: 158 QSILAVLGFQVVLMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLA 204
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 112/178 (62%), Gaps = 29/178 (16%)
Query: 2 LAASEIHGKGCITMRKTAGKPKPVSSGSQ-------WYGPDRVKYLDPLSGGA-PFYLTG 53
+A++ + ++ R+T PK S G Q WYGPDR K+L P S GA P YL G
Sbjct: 1 MASALLSNSFVVSARRTVSSPK--SKGKQVTRASIEWYGPDRPKFLGPYSDGATPSYLKG 58
Query: 54 EFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------- 94
E+PGDYGWDTA LSADPE F++ RE++VIH+RWA+LG L
Sbjct: 59 EYPGDYGWDTAGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVW 118
Query: 95 FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
FKAGAQIFS GL+YL NPSL+HAQSI+A A QVIL+G GY GGP GE+TDPL
Sbjct: 119 FKAGAQIFSADGLNYLGNPSLVHAQSIIATVATQVILLGLAEGYRVNGGPAGEITDPL 176
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/140 (64%), Positives = 96/140 (68%), Gaps = 20/140 (14%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FAKNR L+VIH RWAMLG
Sbjct: 6 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 65
Query: 91 VLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVIL 131
L C FKAGAQIFSEGGLDYL NP+L+HAQSILAV QV+L
Sbjct: 66 ALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 125
Query: 132 MGAVGGYGTAGGP-LGEVTD 150
MG V G+ G P +GE D
Sbjct: 126 MGLVEGFRINGLPGVGEGND 145
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 89/144 (61%), Positives = 100/144 (69%), Gaps = 19/144 (13%)
Query: 28 GSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
G ++YGP+R K+L P S A P YLTGEFPGDYGWDTA LSADPE F + REL++IHARW
Sbjct: 34 GVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 87 AMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQ 128
AMLG L C FKAGAQIFSEGGLDYL NPSL+HAQ+I+A A Q
Sbjct: 94 AMLGALGCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQ 153
Query: 129 VILMGAVGGYGTAGGPLGEVTDPL 152
VILMG + GY GGP GE DPL
Sbjct: 154 VILMGLIEGYRVNGGPAGEGLDPL 177
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 99/154 (64%), Gaps = 29/154 (18%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FA+NR L+VIH RWAMLG
Sbjct: 48 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 107
Query: 91 VLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVIL 131
L C FKAGAQIFSEGGLDYL NP+L+HAQSILAV QV+L
Sbjct: 108 ALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 167
Query: 132 MGAVGGYGTAG----------GPLGEVTDPLSLS 155
MG V G+ G P G+ DPL L+
Sbjct: 168 MGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLA 201
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 99/154 (64%), Gaps = 29/154 (18%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FAKNR L+VIH RWAMLG
Sbjct: 46 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 105
Query: 91 VLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVIL 131
L C FKAG+QIFSEGGLDYL NP+L+HAQSILAV QV+L
Sbjct: 106 ALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 165
Query: 132 MGAVGGYGTAG----------GPLGEVTDPLSLS 155
MG V G+ G P G+ DPL L+
Sbjct: 166 MGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLA 199
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 99/154 (64%), Gaps = 29/154 (18%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FAKNR L+VIH RWAMLG
Sbjct: 48 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 107
Query: 91 VLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVIL 131
L C FKAG+QIFSEGGLDYL NP+L+HAQSILAV QV+L
Sbjct: 108 ALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 167
Query: 132 MGAVGGYGTAG----------GPLGEVTDPLSLS 155
MG V G+ G P G+ DPL L+
Sbjct: 168 MGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLA 201
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/145 (61%), Positives = 98/145 (67%), Gaps = 18/145 (12%)
Query: 26 SSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
S G+++YGP+R K+L P S P YLTGEF GDYGWDTA LSADPE F + REL++IHAR
Sbjct: 34 SKGTEFYGPNRAKWLGPFSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHAR 93
Query: 86 WAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAI 127
WAMLG L C FKAGAQIF EGGL+YL N SLIHAQSILA A
Sbjct: 94 WAMLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLAC 153
Query: 128 QVILMGAVGGYGTAGGPLGEVTDPL 152
QVILMG V GY GGP GE DPL
Sbjct: 154 QVILMGLVEGYRVNGGPAGEGLDPL 178
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/151 (58%), Positives = 98/151 (64%), Gaps = 20/151 (13%)
Query: 20 GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
G + S WYGPDRVKYL P S P YL GEFPGDYGWDTA LSADPE FAKNR L
Sbjct: 36 GSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRAL 95
Query: 80 KVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQS 120
+VIH RWAMLG L C FKAG+QIFS+GGLDYL NP+L+HAQS
Sbjct: 96 EVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQS 155
Query: 121 ILAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
ILAV QV+LMG V G+ G P +GE D
Sbjct: 156 ILAVLGFQVVLMGLVEGFRINGLPGVGEGND 186
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 99/154 (64%), Gaps = 29/154 (18%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FA+NR L+VIH RWAMLG
Sbjct: 13 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 72
Query: 91 VLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVIL 131
L C FKAGAQIFSEGGLDYL NP+L+HAQSILAV QV+L
Sbjct: 73 ALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 132
Query: 132 MGAVGGYGTAG----------GPLGEVTDPLSLS 155
MG V G+ G P G+ DPL L+
Sbjct: 133 MGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLA 166
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 101/153 (66%), Gaps = 24/153 (15%)
Query: 16 RKTAGKPKPVSSGSQ-----WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
RK A + + V ++ WYGPDRVK+L P S P YL GEFPGDYGWDTA LSADP
Sbjct: 25 RKNALRDRSVQCQAKVSMDLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAGLSADP 84
Query: 71 EIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLE 111
E FA+NR L++IH RWAMLG L C FKAG+QIFS+GGLDYL
Sbjct: 85 EAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLG 144
Query: 112 NPSLIHAQSILAVWAIQVILMGAVGGYGTAGGP 144
NP+L+HAQSILA+WA QVILMG V GY G P
Sbjct: 145 NPNLVHAQSILAIWACQVILMGLVEGYRINGLP 177
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 102/156 (65%), Gaps = 20/156 (12%)
Query: 17 KTAGKPKPVSSGSQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
K++G P S WYGPDR K+L P S G P YLTGEFPGDYGWDTA LSADPE F +
Sbjct: 38 KSSGSTAPQLSSWPWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKR 97
Query: 76 NRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLI 116
REL++IHARWAMLG L C FKAGAQIF+EGGL+YL N +L+
Sbjct: 98 YRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLV 157
Query: 117 HAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
HAQSI+A A QV++MG Y GGPLGE DPL
Sbjct: 158 HAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL 193
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 21/172 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDY 59
++A S + T+ A + P + +WYGPDR K+L P S G P YLTGEFPGDY
Sbjct: 3 AIAKSAVRSSVRPTVASRAARVVP-RAAIEWYGPDRPKFLGPFSEGDVPSYLTGEFPGDY 61
Query: 60 GWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQ 100
GWDTA LSADPE F + REL++IHARWAMLG L C FKAGAQ
Sbjct: 62 GWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQ 121
Query: 101 IFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
IF+EGGL+YL N +L+HAQSI+A A QV++MG Y GGPLGE DPL
Sbjct: 122 IFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL 173
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/142 (60%), Positives = 97/142 (68%), Gaps = 19/142 (13%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L P S G P YLTGEFPGDYGWDTA LSADPE F + REL++IHARWAM
Sbjct: 31 EWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAM 90
Query: 89 LGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVI 130
LG L C FKAGAQIF+EGGL+YL N +LIHAQSI+A A QV+
Sbjct: 91 LGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVV 150
Query: 131 LMGAVGGYGTAGGPLGEVTDPL 152
+MG Y GGPLGE DPL
Sbjct: 151 VMGLAEAYRANGGPLGEGLDPL 172
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 104/160 (65%), Gaps = 21/160 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPE 71
+T+ A + P + +WYGPDR K+L P S G P YLTGEFPGDYGWDTA LSADPE
Sbjct: 16 VTVASRAARVVP-RAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPE 74
Query: 72 IFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLEN 112
F + REL++IHARWAMLG L C FKAGAQIF+EGGL+YL N
Sbjct: 75 TFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGN 134
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
+L+HAQSI+A A QV++MG Y GGPLGE DPL
Sbjct: 135 ENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPL 174
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/160 (56%), Positives = 105/160 (65%), Gaps = 25/160 (15%)
Query: 16 RKTAGKPKPVSSGSQ-----WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
RK A + + V ++ WYGPDRVK+L P S P YL GEFPGDYGWDTA LSADP
Sbjct: 25 RKNALRGRSVQCQAKVSMDLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAGLSADP 84
Query: 71 EIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLE 111
E FA+NR L++IH RWAMLG L C FKAG+QIFS+GGLDYL
Sbjct: 85 EAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLG 144
Query: 112 NPSLIHAQSILAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
NP+L+HAQSILA+WA QVILMG V GY G P +GE D
Sbjct: 145 NPNLVHAQSILAIWACQVILMGLVEGYRINGLPDVGEGGD 184
>gi|149941244|emb|CAO02554.1| putative LHCII type III chlorophyll a/b binding protein [Vigna
unguiculata]
Length = 211
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/167 (55%), Positives = 101/167 (60%), Gaps = 29/167 (17%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNR 77
+ G K S WYGPDRVKYL P S P YL GEFPGDYGWDTA LSADPE FAKNR
Sbjct: 38 SMGTGKYTMSNDLWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNR 97
Query: 78 ELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHA 118
L+VIH RWA+LG L C FKAGAQIFSEGGLDYL NP+L+HA
Sbjct: 98 ALEVIHGRWALLGALGCITPEVLGKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHA 157
Query: 119 QSILAVWAIQVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
QSILAV QV+LMG G+ G P G+ DPL L+
Sbjct: 158 QSILAVLGFQVVLMGLAEGFRINGLDGVGEGNNLYPXGQYFDPLGLA 204
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/165 (55%), Positives = 101/165 (61%), Gaps = 29/165 (17%)
Query: 20 GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
G K S WYGPDRVKYL P S P YL GEFPGDYGWDTA LSADPE FAKNR L
Sbjct: 35 GTGKYTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRAL 94
Query: 80 KVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQS 120
+VIH RWAMLG L C FKAG+QIF+EGGLDYL NP+L+HAQS
Sbjct: 95 EVIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQS 154
Query: 121 ILAVWAIQVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
ILAV QV+LMG V G+ G P G+ DPL L+
Sbjct: 155 ILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLA 199
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/158 (57%), Positives = 99/158 (62%), Gaps = 29/158 (18%)
Query: 27 SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
S WYGPDRVKYL P S P YL GEFPGDYGWDTA LSADPE FA+NR L+VIH RW
Sbjct: 44 SKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRW 103
Query: 87 AMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAI 127
AMLG L C FKAGAQIFS+GGLDYL NP+L+HAQSILAV
Sbjct: 104 AMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGF 163
Query: 128 QVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
QV+LMG V GY G P G+ DPL L+
Sbjct: 164 QVVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLA 201
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/162 (55%), Positives = 103/162 (63%), Gaps = 25/162 (15%)
Query: 13 ITMRKTAGKPKPVSSGSQ----WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
+ R+T KP S S WYGP+R +L +G P YLTGEFPGDYGWDTA LSA
Sbjct: 15 VEARRTV---KPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSA 71
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
DPE F + REL++IHARWAMLG L C FKAGAQIF EGGLDYL
Sbjct: 72 DPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYL 131
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
N +L+HAQSILA+ QV+LMGA+ GY GGPLGE D L
Sbjct: 132 GNSNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKL 173
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/158 (57%), Positives = 100/158 (63%), Gaps = 29/158 (18%)
Query: 27 SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
S WYGPDRVKYL P S P YL+GEFPGDYGWDTA LSADPE FA+NR L+VIH RW
Sbjct: 45 SNELWYGPDRVKYLGPFSAQTPSYLSGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRW 104
Query: 87 AMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAI 127
AMLG L C FKAGAQIFSEGGLDYL NP+L+HAQSILAV
Sbjct: 105 AMLGALGCVFPEVLQKWVGVEFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGS 164
Query: 128 QVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
QV+LMG V G+ G P G+ DPL L+
Sbjct: 165 QVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLA 202
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/158 (57%), Positives = 99/158 (62%), Gaps = 29/158 (18%)
Query: 27 SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
S WYGPDRVKYL P S P YL GEFPGDYGWDTA LSADPE FA+NR L+VIH RW
Sbjct: 44 SKELWYGPDRVKYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRW 103
Query: 87 AMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAI 127
AMLG L C FKAGAQIFS+GGLDYL NP+L+HAQSILAV
Sbjct: 104 AMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGF 163
Query: 128 QVILMGAVGGYGTAG----------GPLGEVTDPLSLS 155
QV+LMG V GY G P G+ DPL L+
Sbjct: 164 QVVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLA 201
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 97/143 (67%), Gaps = 20/143 (13%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L P S G P YLTGEFPGDYGWDTA LSADPE F + REL++IHARWAM
Sbjct: 32 EWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAM 91
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAGAQIF+EGGL+YL N +L+HAQSI+A A QV
Sbjct: 92 LGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQV 151
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
++MG Y GGPLGE DPL
Sbjct: 152 VVMGLAEAYRANGGPLGEGLDPL 174
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 97/143 (67%), Gaps = 20/143 (13%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L P S G P YLTGEFPGDYGWDTA LSADPE F + REL++IHARWAM
Sbjct: 32 EWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAM 91
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAGAQIF+EGGL+YL N +L+HAQSI+A A QV
Sbjct: 92 LGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQV 151
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
++MG Y GGPLGE DPL
Sbjct: 152 VVMGLAEAYRANGGPLGEGLDPL 174
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/139 (63%), Positives = 98/139 (70%), Gaps = 22/139 (15%)
Query: 15 MRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
MR+T K V S WYGPDR KYL P S P YLTGEFPGDYGW+TA +SADPE FA
Sbjct: 1 MRRTV---KSVPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFA 56
Query: 75 KNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLI 116
+NREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NP+L+
Sbjct: 57 RNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLV 116
Query: 117 HAQSILAVWAIQVILMGAV 135
HAQSILA+WA QV+LMG V
Sbjct: 117 HAQSILAIWACQVVLMGFV 135
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 96/140 (68%), Gaps = 18/140 (12%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
+YGPDR +L PLSG P YLTGEFPGDYGWD+A LSADPE F + REL++IHARWAMLG
Sbjct: 46 FYGPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAMLG 105
Query: 91 VLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILM 132
L C FKAGAQIF EGGLDYL N LIHAQSILA A+QVILM
Sbjct: 106 ALGCVTPELLAKNGTPIAEPVWFKAGAQIFQEGGLDYLGNAGLIHAQSILATLAVQVILM 165
Query: 133 GAVGGYGTAGGPLGEVTDPL 152
GA+ GY GGP GE D L
Sbjct: 166 GAIEGYRVNGGPAGEGLDKL 185
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/142 (60%), Positives = 97/142 (68%), Gaps = 19/142 (13%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L P S G P YLTGEFPGDYGWDTA LSADPE F + REL++IHARWAM
Sbjct: 31 EWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAM 90
Query: 89 LGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVI 130
LG L C FKAGAQIF+EGGL+YL N +LIHAQSI+A A QV+
Sbjct: 91 LGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVV 150
Query: 131 LMGAVGGYGTAGGPLGEVTDPL 152
+MG Y GGPLGE DPL
Sbjct: 151 VMGLAEAYRANGGPLGEGLDPL 172
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 98/154 (63%), Gaps = 29/154 (18%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYGPDRVKYL P S P YL GEFPGDYGWDTA LSADPE FA+NR L+VIH RWAMLG
Sbjct: 50 WYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
Query: 91 VLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVIL 131
L C FKAG+QIFSEGGLDYL NP+L+HAQSILAV QV+L
Sbjct: 110 ALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLL 169
Query: 132 MGAVGGYGTAG----------GPLGEVTDPLSLS 155
MG V G+ G P G+ DPL L+
Sbjct: 170 MGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLA 203
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/150 (59%), Positives = 98/150 (65%), Gaps = 21/150 (14%)
Query: 22 PKPVSSGSQ-WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELK 80
P + GS WYGPDRVKYL P S P YLTGEFPGDYGWDTA LSADPE FAKNR L+
Sbjct: 36 PGKFTMGSDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALE 95
Query: 81 VIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSI 121
VIH RWAMLG C FKAG+QIF+EGGLDYL NP+L+HAQSI
Sbjct: 96 VIHGRWAMLGAFGCITPEVLEKWVKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSI 155
Query: 122 LAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
LAV QV+LMG V + G P +GE D
Sbjct: 156 LAVLGFQVVLMGLVESFRINGLPGVGEGND 185
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 88/146 (60%), Positives = 100/146 (68%), Gaps = 19/146 (13%)
Query: 26 SSGSQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
SSG ++YGP+R K+L P S P YLTGEFPGDYGWDTA LSADPE F + REL++IHA
Sbjct: 23 SSGVEFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHA 82
Query: 85 RWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
RWAMLG L FKAGAQIF EGGL+YL NPSLIHAQ+I+A A
Sbjct: 83 RWAMLGALGIVTPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLA 142
Query: 127 IQVILMGAVGGYGTAGGPLGEVTDPL 152
+QVIL+G V GY GGP GE DPL
Sbjct: 143 VQVILLGLVEGYRVNGGPAGEGLDPL 168
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 97/142 (68%), Gaps = 19/142 (13%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L P S G P YLTGEFPGDYGWDTA LSADPE F + REL++IHARWAM
Sbjct: 28 EWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAM 87
Query: 89 LGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVI 130
LG L C FKAG+QIF+EGGL+YL N +L+HAQSI+A A QV+
Sbjct: 88 LGALGCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAFQVV 147
Query: 131 LMGAVGGYGTAGGPLGEVTDPL 152
+MG Y GGPLGE DPL
Sbjct: 148 VMGLAEAYRANGGPLGEGLDPL 169
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/143 (60%), Positives = 96/143 (67%), Gaps = 20/143 (13%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L P S G P YLTGEFPGDYGWDTA LSADPE F RE ++IHARWAM
Sbjct: 11 EWYGPDRPKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAM 70
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAG+QIF EGGLDYL NPSL+HAQSILA+ QV
Sbjct: 71 LGALGCVTPEILAKYAGVSCGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQV 130
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
+LMG + Y GGPLGE DPL
Sbjct: 131 VLMGLIEAYRVNGGPLGEGLDPL 153
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/168 (54%), Positives = 104/168 (61%), Gaps = 20/168 (11%)
Query: 5 SEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDT 63
S + G T K V + +WYGPDR K+L P S GA P YLTGEFPGDYGWDT
Sbjct: 7 SVLVGATAKTALVKGNKRVSVQAAVEWYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDT 66
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSE 104
A LSADPE F K RE ++IHARWAMLG L C F+AGAQIF +
Sbjct: 67 AGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKD 126
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL +P+LIHAQSI A+ QVILMG + GY GGP GE DPL
Sbjct: 127 GGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGLDPL 174
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 99/152 (65%), Gaps = 19/152 (12%)
Query: 20 GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
G+ + + ++YGPDR K+L P S P YLTGEFPGDYGWDTA LSADPE FA REL
Sbjct: 23 GQKQVTRAAVEFYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFASYREL 82
Query: 80 KVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQS 120
++IHARWAMLG L C FKAGAQIF++GGLDYL N SL+HAQS
Sbjct: 83 ELIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSSLVHAQS 142
Query: 121 ILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
ILA+ QV+LMG + GGPLGE D L
Sbjct: 143 ILAILGCQVVLMGGAEAFRVNGGPLGEDLDKL 174
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 99/148 (66%), Gaps = 20/148 (13%)
Query: 25 VSSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIH 83
V + +WYGPDR K+L P S GA P YLTGEFPGDYGWDTA LSADPE F K RE ++IH
Sbjct: 24 VQAAVEWYGPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIH 83
Query: 84 ARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAV 124
ARWAMLG L C F+AGAQIF +GGLDYL +P+LIHAQSI A+
Sbjct: 84 ARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAI 143
Query: 125 WAIQVILMGAVGGYGTAGGPLGEVTDPL 152
QVILMG + GY GGP GE DPL
Sbjct: 144 VISQVILMGLIEGYRVNGGPAGEGLDPL 171
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 97/142 (68%), Gaps = 19/142 (13%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L P S G P YLTGEFPGDYGWDTA LSADPE F + REL++IHARWAM
Sbjct: 11 EWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAM 70
Query: 89 LGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVI 130
LG L C FKAG+QIF+EGGL+YL N +L+HAQSI+A A QV+
Sbjct: 71 LGALGCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAFQVV 130
Query: 131 LMGAVGGYGTAGGPLGEVTDPL 152
+MG Y GGPLGE DPL
Sbjct: 131 VMGLAEAYRANGGPLGEGLDPL 152
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 99/147 (67%), Gaps = 19/147 (12%)
Query: 25 VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
++ ++YGPDR K+L P S P YLTGEFPGDYGWDTA LSADPE FA+ RE++VIHA
Sbjct: 26 IARAVEFYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYREIEVIHA 85
Query: 85 RWAMLGVLCC---------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
RWAMLG L C FKAGAQIFSEGGLDYL NPSL+HAQSI+A A+QV
Sbjct: 86 RWAMLGALGCITPELIGGDIAEPVWFKAGAQIFSEGGLDYLGNPSLVHAQSIIATLAVQV 145
Query: 130 ILMGAVGGYGTAG----GPLGEVTDPL 152
ILMG + AG G GE D L
Sbjct: 146 ILMGQAEAFRAAGYVVPGGFGEDLDNL 172
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 95/143 (66%), Gaps = 20/143 (13%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L P S G P YLTGEFPGDYGWDTA LSADPE F RE ++IHARWAM
Sbjct: 27 EWYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAM 86
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAG+QIF EGGLDYL N +LIHAQSILA+ QV
Sbjct: 87 LGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSNLIHAQSILAILGCQV 146
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
+LMG + Y GGPLGE DPL
Sbjct: 147 VLMGLIEAYRVNGGPLGEGLDPL 169
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 95/144 (65%), Gaps = 20/144 (13%)
Query: 30 QWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR +L P S GA P YLTGEFPGDYGWDT LSADP FA RE +VIHARWAM
Sbjct: 126 EWYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAM 185
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAG+QIF+EGGLDYL NPSL+HAQSILA+ A QV
Sbjct: 186 LGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQV 245
Query: 130 ILMGAVGGYGTAGGPLGEVTDPLS 153
ILMG Y GGP GE D ++
Sbjct: 246 ILMGGAEAYRVNGGPAGEGLDAIN 269
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 95/144 (65%), Gaps = 20/144 (13%)
Query: 30 QWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR +L P S GA P YLTGEFPGDYGWDT LSADP FA RE +VIHARWAM
Sbjct: 127 EWYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAM 186
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAG+QIF+EGGLDYL NPSL+HAQSILA+ A QV
Sbjct: 187 LGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQV 246
Query: 130 ILMGAVGGYGTAGGPLGEVTDPLS 153
ILMG Y GGP GE D ++
Sbjct: 247 ILMGGAEAYRVNGGPAGEGLDAIN 270
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 97/148 (65%), Gaps = 20/148 (13%)
Query: 25 VSSGSQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIH 83
V + +WYGPDR K+L P S G P YLTG+FPGDYGWDTA LSADPE F RE ++IH
Sbjct: 21 VRNAVEWYGPDRAKWLGPFSEGDVPSYLTGQFPGDYGWDTAGLSADPETFKAYREQELIH 80
Query: 84 ARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAV 124
ARWAMLG L C FKAG+QIF EGGLDYL NPSL+HAQSILA+
Sbjct: 81 ARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAI 140
Query: 125 WAIQVILMGAVGGYGTAGGPLGEVTDPL 152
QV+LMG + Y GGPLGE D L
Sbjct: 141 LGCQVVLMGLIEAYRVNGGPLGEGLDVL 168
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/143 (60%), Positives = 95/143 (66%), Gaps = 20/143 (13%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L P S G P YLTGEFPGDYGWDTA LSADPE F RE ++IHARWAM
Sbjct: 26 EWYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAM 85
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAG+QIF EGGLDYL NPSL+HAQSILA+ QV
Sbjct: 86 LGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQV 145
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
+LMG + Y GGPLGE D L
Sbjct: 146 VLMGLIEAYRVNGGPLGEGLDVL 168
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 104/161 (64%), Gaps = 21/161 (13%)
Query: 13 ITMRKTAG-KPKPVSSG-SQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSAD 69
+ M TAG K P S + WYGP+R K+L P S G P YLTGEFPGDYGWDTA L+AD
Sbjct: 119 VAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAAD 178
Query: 70 PEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLE 111
P FAK RE ++IHARWAMLG L FKAGAQIFSEGGLDYL
Sbjct: 179 PITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLG 238
Query: 112 NPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
N +L+HAQSILA+ A QV+LMG Y GGPLGE +D L
Sbjct: 239 NSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDAL 279
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 104/161 (64%), Gaps = 21/161 (13%)
Query: 13 ITMRKTAG-KPKPVSSG-SQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSAD 69
+ M TAG K P S + WYGP+R K+L P S G P YLTGEFPGDYGWDTA L+AD
Sbjct: 359 VAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAAD 418
Query: 70 PEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLE 111
P FAK RE ++IHARWAMLG L FKAGAQIFSEGGLDYL
Sbjct: 419 PITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLG 478
Query: 112 NPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
N +L+HAQSILA+ A QV+LMG Y GGPLGE +D L
Sbjct: 479 NSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDAL 519
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
+L+HAQSILA+ A QV+LMG Y GGPLGE +D L
Sbjct: 1 NLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDAL 39
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 105/168 (62%), Gaps = 21/168 (12%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
A ++ K T+ + A + K + S +YGPDRV +L P + P YLTGE+PGDYGWDT
Sbjct: 19 AQKVEAKKINTVVE-ARRTKSATPDSPFYGPDRVTFLGPFTD-VPSYLTGEYPGDYGWDT 76
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSE 104
LSADPE FA RE++++HARWAMLG L C FKAG QIF E
Sbjct: 77 VGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQIFQE 136
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSL+HAQSI+A IQ +LMG V GY GGPLGE D +
Sbjct: 137 GGLDYLGNPSLVHAQSIIATVFIQALLMGLVEGYRVGGGPLGEAGDKM 184
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 88/117 (75%), Gaps = 18/117 (15%)
Query: 54 EFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------F 95
EFPGDYGWDTA LSADPE F+KNREL+VIH+RWAMLG L C F
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWF 60
Query: 96 KAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
KAG+QIFSEGGLDYL NPSL+HAQSIL VWA QVILMGAV GY AGGPLGEV DPL
Sbjct: 61 KAGSQIFSEGGLDYLGNPSLVHAQSILTVWATQVILMGAVEGYRIAGGPLGEVVDPL 117
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 94/144 (65%), Gaps = 20/144 (13%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR +L P S G P YLTGEFPGDYGWDT LSADP FA RE +VIHARWAM
Sbjct: 127 EWYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAM 186
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAG+QIF+EGGLDYL NPSL+HAQSILA+ A QV
Sbjct: 187 LGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQV 246
Query: 130 ILMGAVGGYGTAGGPLGEVTDPLS 153
ILMG Y GGP GE D ++
Sbjct: 247 ILMGGAEAYRVNGGPAGEGLDAIN 270
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 104/161 (64%), Gaps = 21/161 (13%)
Query: 13 ITMRKTAG-KPKPVSSG-SQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSAD 69
+ M TAG K P S + WYGP+R K+L P S G P YLTGEFPGDYGWDTA L+AD
Sbjct: 102 VAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAAD 161
Query: 70 PEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLE 111
P FAK RE ++IHARWAMLG L FKAGAQIFSEGGLDYL
Sbjct: 162 PITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLG 221
Query: 112 NPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
N +L+HAQSILA+ A QV+LMG Y GGPLGE +D L
Sbjct: 222 NSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDAL 262
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 103/161 (63%), Gaps = 21/161 (13%)
Query: 13 ITMRKTAG-KPKPVSSG-SQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSAD 69
+ M TAG K P S + WYGP+R K+L P S P YLTGEFPGDYGWDTA L+AD
Sbjct: 342 VAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAAD 401
Query: 70 PEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLE 111
P FAK RE ++IHARWAMLG L FKAGAQIFSEGGLDYL
Sbjct: 402 PITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLG 461
Query: 112 NPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
N +L+HAQSILA+ A QV+LMG Y GGPLGE +D L
Sbjct: 462 NSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDAL 502
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 103/161 (63%), Gaps = 21/161 (13%)
Query: 13 ITMRKTAG-KPKPVSSG-SQWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSAD 69
+ M TAG K P S + WYGP+R K+L P S P YLTGEFPGDYGWDTA L+AD
Sbjct: 582 VAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAAD 641
Query: 70 PEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLE 111
P FAK RE ++IHARWAMLG L FKAGAQIFSEGGLDYL
Sbjct: 642 PITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLG 701
Query: 112 NPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
N +L+HAQSILA+ A QV+LMG Y GGPLGE +D L
Sbjct: 702 NSNLVHAQSILAILAFQVVLMGLAEAYRVNGGPLGEDSDAL 742
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 95/144 (65%), Gaps = 20/144 (13%)
Query: 30 QWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR +L P S GA P YLTGEFPGDYGWDT LSADP FA RE +VIHARWAM
Sbjct: 111 EWYGPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAM 170
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAG+QIF+EGGLDYL NPSLIHAQSILA+ A QV
Sbjct: 171 LGALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLIHAQSILAILACQV 230
Query: 130 ILMGAVGGYGTAGGPLGEVTDPLS 153
+LMG Y GGP GE D ++
Sbjct: 231 VLMGGAEAYRVNGGPAGEGLDAIN 254
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/154 (58%), Positives = 97/154 (62%), Gaps = 29/154 (18%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYGPDRVKYL P S P YLTGEFPG+YGWDTA LSADPE FAKNR L+VIH RWAMLG
Sbjct: 3 WYGPDRVKYLGPFSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 62
Query: 91 VLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVIL 131
C FKAG+QIFSEGGLDYL NP+L+HAQSILAV QVIL
Sbjct: 63 AFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVIL 122
Query: 132 MGAVGGYGTAG----------GPLGEVTDPLSLS 155
MG V G G P G+ DPL L+
Sbjct: 123 MGLVEGLRINGLDGVGEGNDLYPGGQYFDPLGLA 156
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 94/144 (65%), Gaps = 20/144 (13%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR +L P S G P YLTGEFPGDYGWDT LSADP FA RE +VIHARWAM
Sbjct: 114 EWYGPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAM 173
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAG+QIF+EGGLDYL NPSL+HAQSILA+ A QV
Sbjct: 174 LGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQV 233
Query: 130 ILMGAVGGYGTAGGPLGEVTDPLS 153
ILMG Y GGP GE D ++
Sbjct: 234 ILMGGAEAYRVNGGPAGEGLDAIN 257
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 99/159 (62%), Gaps = 20/159 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
I A + K + S +YGPDRV +L P + P YLTGE+PGDYGWDT LSADPE
Sbjct: 27 INTVVEARRTKSATPDSPFYGPDRVTFLGPFTD-VPSYLTGEYPGDYGWDTVGLSADPET 85
Query: 73 FAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENP 113
FA RE++++HARWAMLG L C FKAG QIF EGGLDYL NP
Sbjct: 86 FAAYREIELMHARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQIFQEGGLDYLGNP 145
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SL+HAQSI+A IQ +LMG V GY GGPLGE D +
Sbjct: 146 SLVHAQSIIATVFIQALLMGLVEGYRVGGGPLGEAGDKM 184
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 97/142 (68%), Gaps = 19/142 (13%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
++YGP+R K+L P S P YLTGEFPGDYGWDTA LSADPE F + REL++IHARWAM
Sbjct: 36 EFYGPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAM 95
Query: 89 LGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVI 130
LG L FKAGAQIF EGGL+YL NPSLIHAQ+I+A A+QV+
Sbjct: 96 LGALGIVTPELLQKNGVQFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVV 155
Query: 131 LMGAVGGYGTAGGPLGEVTDPL 152
L+G V GY GGP GE DPL
Sbjct: 156 LLGLVEGYRVNGGPAGEGLDPL 177
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 97/145 (66%), Gaps = 9/145 (6%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 36 ITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 73 FAKNREL-----KVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAI 127
FA L +++ G FKAGAQIFSEGGLDYL NP+LIHAQSILA+WA
Sbjct: 92 FAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAS 151
Query: 128 QVILMGAVGGYGTAGGPLGEVTDPL 152
QV+LMG + GY GGPLGE DPL
Sbjct: 152 QVVLMGLIEGYRVGGGPLGEGLDPL 176
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/158 (55%), Positives = 100/158 (63%), Gaps = 19/158 (12%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+ R+T K + S WYGPDR KYL LSG P YLTGEF GDYGWDTA LSADPE
Sbjct: 25 VEARRTV-KGASSAPDSVWYGPDRPKYLGWLSGETPAYLTGEFAGDYGWDTAGLSADPET 83
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
F + REL++IHARWAMLG L C FKAGAQIF +GGL+YL N +
Sbjct: 84 FKRYRELELIHARWAMLGALGCITPELLANNGTPIAEPVWFKAGAQIFQDGGLNYLGNEN 143
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L+HAQSI+ +QVILMG V GY GGP GE D L
Sbjct: 144 LVHAQSIIVTLLVQVILMGTVEGYRVNGGPAGEGLDKL 181
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/143 (58%), Positives = 94/143 (65%), Gaps = 20/143 (13%)
Query: 30 QWYGPDRVKYLDPL-SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L P G P YLTGEFPGDYGWDTA LSADPE F RE ++IHARWAM
Sbjct: 26 EWYGPDRAKWLGPFFEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAM 85
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAG+QIF EGGLDYL NPSL+HAQSILA+ QV
Sbjct: 86 LGALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQV 145
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
+LMG + Y GGPLG+ D L
Sbjct: 146 VLMGLIEAYRVNGGPLGKGLDVL 168
>gi|449515811|ref|XP_004164941.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like,
partial [Cucumis sativus]
Length = 149
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 91/129 (70%), Gaps = 20/129 (15%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
++ E+ G +TMRK+A K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWD
Sbjct: 23 SSPELFGNSRVTMRKSATKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWD 80
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+QIFSE
Sbjct: 81 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSE 140
Query: 105 GGLDYLENP 113
GGLDYL NP
Sbjct: 141 GGLDYLGNP 149
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 94/143 (65%), Gaps = 20/143 (13%)
Query: 30 QWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR +L P S GA P YL GEFPGDYGWDTA LSADPE F RE ++IHARWAM
Sbjct: 7 EWYGPDRALWLGPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAM 66
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAG+QIF EGGLDYL NPSL+HAQSILA+ QV
Sbjct: 67 LGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQV 126
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
+LMG + Y GGPLGE D L
Sbjct: 127 VLMGLIEAYRVNGGPLGEGLDTL 149
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 106/166 (63%), Gaps = 24/166 (14%)
Query: 11 GCITMRKTA----GKPKPVSSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTAC 65
G +T++++A + + +WYGP+R K+L P S GA P YLTGEFPGDYGWDTA
Sbjct: 7 GNVTIQRSAVVNVARNVGAKAADEWYGPNRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAG 66
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGG 106
LSADPE F K RE ++IHAR+AMLG L C F+AGAQIF EGG
Sbjct: 67 LSADPETFKKYRETELIHARFAMLGALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGG 126
Query: 107 LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
LDYL +P+LIHAQSI A+ QV+LMG V GY GGP GE D L
Sbjct: 127 LDYLGSPALIHAQSIGAIVISQVVLMGLVEGYRVNGGPAGEGLDSL 172
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 100/155 (64%), Gaps = 23/155 (14%)
Query: 21 KPKPVSSGSQWYGPDRVKYLDPLSGG-APFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
K KP S S WYGPDR K+L P S G P YLTGEFPGDYGWDT+ LSADPE F + R +
Sbjct: 26 KAKPSKSDSVWYGPDRPKFLGPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTV 85
Query: 80 KVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQS 120
+VIHARWAMLG L C FKAGAQIF++GGL+YL NP L+HAQS
Sbjct: 86 EVIHARWAMLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHAQS 145
Query: 121 ILAVWAIQVILMGAVGGYGTAG-GP--LGEVTDPL 152
I+A +QV+LMGAV Y G GP GE D L
Sbjct: 146 IVATLVVQVLLMGAVEIYRANGEGPSGFGEGQDNL 180
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/116 (70%), Positives = 87/116 (75%), Gaps = 19/116 (16%)
Query: 56 PGDYGWDTAC-LSADPEIFAKNRELKVIHARWAMLGVLCC------------------FK 96
PGDYGWDT+ LSADPE FAKNREL+VIH+RWAMLG L C FK
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFK 60
Query: 97 AGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
AGAQIFSEGGLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 61 AGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 116
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 99/156 (63%), Gaps = 20/156 (12%)
Query: 17 KTAGKPKPVSSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAK 75
KTA P + G ++YGP+R K+L P S A P Y +FPGDYGWDTA LSADPE F +
Sbjct: 26 KTAASRPPPAPGIEFYGPNRAKWLGPYSENATPAYRLAKFPGDYGWDTAGLSADPETFKR 85
Query: 76 NRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIH 117
REL++IHARWAMLG L C FKAGAQIFSEGGLDYL NPSL+H
Sbjct: 86 YRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 145
Query: 118 AQSILA-VWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
AQ+I +VILMG V GY GGP GE DPL
Sbjct: 146 AQNIRRHPGRFKVILMGLVEGYRVNGGPAGEGLDPL 181
>gi|117661756|gb|ABK55666.1| chloroplast chlorophyll a/b-binding protein [Cucumis sativus]
Length = 137
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/115 (69%), Positives = 87/115 (75%), Gaps = 18/115 (15%)
Query: 56 PGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKA 97
PGDYGWDTA LSADPE FAKNREL+VIH+RWAMLG L C FKA
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKA 60
Query: 98 GAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
G+QIFSEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEVT P+
Sbjct: 61 GSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTVPI 115
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/145 (58%), Positives = 96/145 (66%), Gaps = 22/145 (15%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L P S G P YLTGEF GDYGWDTA LSADP+ FAK RE++VIHARWAM
Sbjct: 28 EWYGPDRPKFLGPFSEGDTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAM 87
Query: 89 LGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVI 130
LG L C FKAGAQIF +GGL+YL N +L+HAQSILA A+QV+
Sbjct: 88 LGALGCITPELLAKNGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVL 147
Query: 131 LMGAVGGY---GTAGGPLGEVTDPL 152
LMGA Y G A G GE D L
Sbjct: 148 LMGAAESYRANGGAPGGFGEDLDSL 172
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 86/118 (72%), Gaps = 18/118 (15%)
Query: 53 GEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------ 94
GEFPGDYGWDTA LSADPE FAKNRE +VIH+RWAMLG L C
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVW 60
Query: 95 FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
FKAGAQIFSEGGLDYL NP+LIHAQSILA+WA QV+LMG V GY GGPLGE DPL
Sbjct: 61 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPL 118
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 107/172 (62%), Gaps = 21/172 (12%)
Query: 1 SLAASEIHGKGCITMRKTAGK-PKPVSSGS-QWYGPDRVKYLDPLSGGAPFYLTGEFPGD 58
++ A G T+GK K V+ + ++YGP+R YL P + +P YL GE+PGD
Sbjct: 4 TMMAKTFLGASLAKAVPTSGKGTKQVTRAAIEFYGPNRAGYLGPFTK-SPSYLNGEYPGD 62
Query: 59 YGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF------------------KAGAQ 100
YGWDTA LSADPE FA+ RE++VIHARWAMLG L C KAG+Q
Sbjct: 63 YGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSFGEAVWWKAGSQ 122
Query: 101 IFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
IF+ GGLDYL NPSLIHAQSI+A+ QV+LMG + GY GGP GE D L
Sbjct: 123 IFAPGGLDYLGNPSLIHAQSIIAIVFSQVLLMGLIEGYRVNGGPAGEGLDAL 174
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 104/168 (61%), Gaps = 19/168 (11%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
A++ K ++++ + K S +YGP+R +L LSG P YL GEFPGDYGWDT
Sbjct: 13 AAKAGRKTTVSVQARRTQAKKAVPESPFYGPNRPLFLGGLSGEPPAYLNGEFPGDYGWDT 72
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAGAQIFSE 104
A LSADPE F + R+L++IHARWA+LG L C FK GA+IF E
Sbjct: 73 AGLSADPETFKRYRQLELIHARWALLGALGCVVPELLARNGVAMPADGVWFKVGAEIFKE 132
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGL+YL N +L+HAQSI+A +Q++LMG GY GGPLGE DPL
Sbjct: 133 GGLNYLGNENLVHAQSIVATLLVQLVLMGWAEGYRINGGPLGEGLDPL 180
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 84/113 (74%), Gaps = 18/113 (15%)
Query: 58 DYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGA 99
DYGWDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS 60
Query: 100 QIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
QIFSEGGLDYL NPSL+HAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 61 QIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPL 113
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 104/173 (60%), Gaps = 30/173 (17%)
Query: 10 KGCITMRKTAGKPKPVSSGS--------QWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYG 60
+ R T G +P GS ++YGPDR K+L P S GA P YL GEFPGDYG
Sbjct: 2 QATAATRATFGLSRPAVRGSRQVTRASVEFYGPDRAKWLGPFSDGAVPSYLKGEFPGDYG 61
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC--------------------FKAGAQ 100
WD+A LSADPE FA+ RE++VIHARWAMLG L C FKAGA
Sbjct: 62 WDSAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGAS 121
Query: 101 IFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
IFS+ GL+YL NPSLIHAQSI+AV Q+++MGA Y AG GP+ D L
Sbjct: 122 IFSDDGLNYLGNPSLIHAQSIVAVLLTQLVIMGAAEAYRYAGEGPVETSGDSL 174
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 84/113 (74%), Gaps = 18/113 (15%)
Query: 58 DYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGA 99
DYGWDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS 60
Query: 100 QIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
QIFSEGGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 61 QIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 113
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 84/117 (71%), Gaps = 18/117 (15%)
Query: 54 EFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------F 95
FPGDYGWDTA LSADPE FAKNREL+VIH RWAMLG L C F
Sbjct: 2 RFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWF 61
Query: 96 KAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
KAGAQIFSEGGLDYL NP+LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 62 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPL 118
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 84/113 (74%), Gaps = 18/113 (15%)
Query: 58 DYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGA 99
DYGWDTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLARNGVKFGEAVWFKAGS 60
Query: 100 QIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
QIFSEGGLDYL NP+LIHAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 61 QIFSEGGLDYLGNPTLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 113
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 94/150 (62%), Gaps = 20/150 (13%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+ R+T K + S WYGPDR +L LSG P YLTGEFPGDYGWDTA SADP
Sbjct: 24 VNARRTVKPSKGSTPDSAWYGPDRPLFLGSLSGEPPSYLTGEFPGDYGWDTAGFSADPTT 83
Query: 73 FAKNRELKVIHARWAMLGVLCC--------------------FKAGAQIFSEGGLDYLEN 112
FA+ R ++VIHARWA+LG L FKAG++IF EGGL+YL N
Sbjct: 84 FARYRTIEVIHARWALLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGN 143
Query: 113 PSLIHAQSILAVWAIQVILMGAVGGYGTAG 142
P+LIHAQSILA A+QVI+MGA G+ G
Sbjct: 144 PNLIHAQSILATLAVQVIVMGAAEGFRANG 173
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/128 (63%), Positives = 87/128 (67%), Gaps = 20/128 (15%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPE-IFAKNRELKVIHARWAML 89
WYGPDRVKYL P S P Y TGEFPGDYGWDTA LSADPE FAKN L+VI+ RWAML
Sbjct: 47 WYGPDRVKYLGPFSVQTPSYPTGEFPGDYGWDTAGLSADPEKAFAKNIALEVIYGRWAML 106
Query: 90 GVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVI 130
G C FKAG+QIFSEGGLDYL NP+L+HAQSILAV QVI
Sbjct: 107 GAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVI 166
Query: 131 LMGAVGGY 138
LMG V G+
Sbjct: 167 LMGLVEGF 174
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 99/157 (63%), Gaps = 32/157 (20%)
Query: 30 QWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAML 89
++YGPDR K+L P + + YLTGEFPGDYGWDTA LSADP+ F++ RE++VIHARWAML
Sbjct: 28 EFYGPDRAKFLGPFTPESD-YLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAML 86
Query: 90 GVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVIL 131
G L C FKAGAQIF +GGL+YL N +L+HAQSILA A+QVIL
Sbjct: 87 GALGCITPELLAKNGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVIL 146
Query: 132 MGAVGGYGTAGG-------------PLGEVTDPLSLS 155
MGA Y GG P G+ DPL L+
Sbjct: 147 MGAAEAYRANGGAPGGFGEDLDSLYPGGKFFDPLGLA 183
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 89/139 (64%), Gaps = 17/139 (12%)
Query: 30 QWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAML 89
+WYG +R KYL P P YLTGEFPGDYGWD+A LSADP F RE +VIHARWAML
Sbjct: 88 EWYGENRPKYLGPFQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAML 147
Query: 90 GVLCC----------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMG 133
G L C FKAG IF E G+DYL NP+L+HAQS LAV ++QV+LMG
Sbjct: 148 GALGCIFPELLNSAGFNLPVWFKAGGTIF-ENGIDYLGNPNLVHAQSALAVLSVQVVLMG 206
Query: 134 AVGGYGTAGGPLGEVTDPL 152
A Y GGPLGE D L
Sbjct: 207 ASEAYRFNGGPLGEPADVL 225
>gi|225690800|gb|ACO06086.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 215
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/132 (61%), Positives = 88/132 (66%), Gaps = 22/132 (16%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLEN 112
E FAKNREL+VIH+RWAMLG L C FKAG QIF EGGLDYL +
Sbjct: 87 ETFAKNRELEVIHSRWAMLGALGCVFPEILCKNGLKFGEAVWFKAGPQIFFEGGLDYLGH 146
Query: 113 PSLIHAQSILAV 124
P+L+HAQS L +
Sbjct: 147 PNLVHAQSFLPI 158
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 89/131 (67%), Gaps = 11/131 (8%)
Query: 20 GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
GKP SGS WYGPDRVKYL P SG P YLTGEFPGDYGWDTA LSADPE FAKNREL
Sbjct: 12 GKP----SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 67
Query: 80 KVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYG 139
+VIH RWAMLG L C ++ S G+ + E A+WA QVILMGAV GY
Sbjct: 68 EVIHCRWAMLGALGC--VFPELLSRNGVKFGE-----AVWFKAAIWACQVILMGAVEGYR 120
Query: 140 TAGGPLGEVTD 150
GGPLGEV +
Sbjct: 121 IGGGPLGEVKE 131
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 93/141 (65%), Gaps = 20/141 (14%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
++YGPDR K+L P S P YLTGEFPGDYGWDTA LSADP+ FA+ RE+++IHARWA+
Sbjct: 32 EFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWAL 91
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L FKAGAQIF++GGL+YL N SLIHAQSI+A A+QV
Sbjct: 92 LGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQV 151
Query: 130 ILMGAVGGYGTAGGPLGEVTD 150
+LMG Y GG G + D
Sbjct: 152 VLMGLAEAYRANGGSEGFLDD 172
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/137 (56%), Positives = 91/137 (66%), Gaps = 20/137 (14%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L P S G P YLTGEFPGDYGWDTA LSADP FA+ RE+++IHARWAM
Sbjct: 27 EWYGPDRPKFLGPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAM 86
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAGA IF++ GL+YL NP+LIHAQSILA A QV
Sbjct: 87 LGALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAFQV 146
Query: 130 ILMGAVGGYGTAGGPLG 146
++MGA + GG G
Sbjct: 147 VVMGAAESFRFNGGAPG 163
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 93/141 (65%), Gaps = 20/141 (14%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
++YGPDR K+L P S P YLTGEFPGDYGWDTA LSADP+ FA+ RE+++IHARWA+
Sbjct: 32 EFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWAL 91
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L FKAGAQIF++GGL+YL N SLIHAQSI+A A+QV
Sbjct: 92 LGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQV 151
Query: 130 ILMGAVGGYGTAGGPLGEVTD 150
+LMG Y GG G + D
Sbjct: 152 VLMGLAEAYRANGGSEGFLDD 172
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 92/144 (63%), Gaps = 20/144 (13%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
SQWYGPDR K+L PL+G P YLTGE PGDYGWDTA L ADP A+ RE +VIHARWAM
Sbjct: 150 SQWYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAM 209
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L +KAGAQIFS GL+YL NPSLIHAQS++ + +
Sbjct: 210 LGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTL 269
Query: 130 ILMGAVGGYGTAGG-PLGEVTDPL 152
+MGAV GY GG PLG+ D L
Sbjct: 270 AIMGAVEGYRYGGGWPLGDDLDRL 293
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 92/144 (63%), Gaps = 20/144 (13%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
SQWYGPDR K+L PL+G P YLTGE PGDYGWDTA L ADP A+ RE +VIHARWAM
Sbjct: 150 SQWYGPDRAKWLGPLTGQVPAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAM 209
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L +KAGAQIFS GL+YL NPSLIHAQS++ + +
Sbjct: 210 LGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTL 269
Query: 130 ILMGAVGGYGTAGG-PLGEVTDPL 152
+MGAV GY GG PLG+ D L
Sbjct: 270 AIMGAVEGYRYGGGWPLGDDLDRL 293
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 92/141 (65%), Gaps = 20/141 (14%)
Query: 30 QWYGPDRVKYLDPLS-GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
++YGPDR K+L P S P YLTGEFPGDYGWDTA LSADP+ FA+ RE+++IHARWA+
Sbjct: 32 EFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWAL 91
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L FKAGAQIF+ GGL+YL N SLIHAQSI+A A+QV
Sbjct: 92 LGALGILTPELLSQYAGVQFGEPVWFKAGAQIFAAGGLNYLGNESLIHAQSIIATLAVQV 151
Query: 130 ILMGAVGGYGTAGGPLGEVTD 150
+LMG Y GG G + D
Sbjct: 152 VLMGLAEAYRANGGSEGFLDD 172
>gi|116785674|gb|ABK23816.1| unknown [Picea sitchensis]
Length = 166
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 82/123 (66%), Gaps = 22/123 (17%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 36 ITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+
Sbjct: 92 FAKNRELEVIHCRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPN 151
Query: 115 LIH 117
LIH
Sbjct: 152 LIH 154
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 89/136 (65%), Gaps = 15/136 (11%)
Query: 30 QWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
WYGP R K+L P S GA P YLTGEFPGDYGWDTA LSADP+ FA+ RE++VIHARWAM
Sbjct: 37 SWYGPSRPKFLGPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAM 96
Query: 89 LGVLCC--------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGA 134
LG L C F AGA IFS+ GL YL P LI+A+SI+A +QVILM
Sbjct: 97 LGALGCVVPELLDGTNHIAWFNAGATIFSDDGLQYLGIPGLINAKSIVATLIVQVILMSY 156
Query: 135 VGGYGTAGGPLGEVTD 150
V GY GGP G D
Sbjct: 157 VEGYRVNGGPAGTGLD 172
>gi|169261106|gb|ACA52201.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata subsp.
hookeri]
Length = 119
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 75/90 (83%), Gaps = 1/90 (1%)
Query: 6 EIHGKGCITMRKTAGKPKP-VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
E+ G ITMRKTAGK KP VSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWDTA
Sbjct: 25 EVLTTGGITMRKTAGKAKPAVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTA 84
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC 94
LSADPE FAKNREL+VIH+RWAMLG L C
Sbjct: 85 GLSADPETFAKNRELEVIHSRWAMLGALGC 114
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 95/155 (61%), Gaps = 20/155 (12%)
Query: 17 KTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKN 76
K G + + ++YGPDR +L P + +P YL GEFPGDYGWDTA LSADPE FA+
Sbjct: 17 KGQGNKQVTRAAIEFYGPDRAGFLGPFTE-SPSYLKGEFPGDYGWDTAGLSADPETFARY 75
Query: 77 RELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHA 118
RE++VIHARWAMLG L C FKAGAQIF GL+YL NPSL+HA
Sbjct: 76 REIEVIHARWAMLGALGCVTPELLAKNGVSFGEAVWFKAGAQIFGSDGLNYLGNPSLVHA 135
Query: 119 QSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
QSI+A A QVILMG Y G GP E D L
Sbjct: 136 QSIIATLACQVILMGGAEAYRANGEGPGVEGLDSL 170
>gi|169261108|gb|ACA52202.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 118
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 75/90 (83%), Gaps = 1/90 (1%)
Query: 6 EIHGKGCITMRKTAGKPKP-VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
E+ G ITMRKTAGK KP VSSGS WYGPDRVKYL P SG AP YLTGEFPGDYGWDTA
Sbjct: 12 EVLTTGGITMRKTAGKAKPAVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTA 71
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVLCC 94
LSADPE FAKNREL+VIH+RWAMLG L C
Sbjct: 72 GLSADPETFAKNRELEVIHSRWAMLGALGC 101
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 93/152 (61%), Gaps = 20/152 (13%)
Query: 20 GKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNREL 79
G + + ++YGPDR +L P + P YL GEFPGDYGWDTA LSADPE FA+ RE+
Sbjct: 25 GNRQVTRAAIEFYGPDRATFLGPFTD-TPSYLNGEFPGDYGWDTAGLSADPETFARYREI 83
Query: 80 KVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSI 121
+VIHARWAMLG L C FKAGAQIF GL+YL N SL+HAQSI
Sbjct: 84 EVIHARWAMLGALGCVTPELLAKNGVSFGEAVWFKAGAQIFGSDGLNYLGNSSLVHAQSI 143
Query: 122 LAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
+A A QVILMG Y AG GP E D L
Sbjct: 144 IATLACQVILMGGAEAYRAAGEGPGLEGLDSL 175
>gi|193872610|gb|ACF23033.1| ST140, partial [Eutrema halophilum]
Length = 141
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 77/122 (63%), Positives = 84/122 (68%), Gaps = 19/122 (15%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G +TMRKT KPK SGS WYG DRVKYL P SG P YLTGEFPG+YG
Sbjct: 21 SPAASEVLGSGRVTMRKTVAKPK-GPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGNYG 79
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIF 102
WDTA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QIF
Sbjct: 80 WDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGKAVWFKAGSQIF 139
Query: 103 SE 104
SE
Sbjct: 140 SE 141
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/140 (56%), Positives = 91/140 (65%), Gaps = 12/140 (8%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 36 ITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILM 132
FAKNREL+VIH RWAMLG L C ++ ++ G+ + E A A+WA QV+LM
Sbjct: 92 FAKNRELEVIHCRWAMLGALGC--VFPELLAKTGVKFGE------AVWFKAIWASQVVLM 143
Query: 133 GAVGGYGTAGGPLGEVTDPL 152
G + GY GGPLGE DPL
Sbjct: 144 GLIEGYRVGGGPLGEGLDPL 163
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/109 (70%), Positives = 80/109 (73%), Gaps = 18/109 (16%)
Query: 62 DTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFS 103
DTA LSADPE FAKNREL+VIH RWAMLG L C FKAG+QIFS
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFS 60
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
EGGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 61 EGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPL 109
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 82/114 (71%), Gaps = 18/114 (15%)
Query: 57 GDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAG 98
GDYGWDTA LSADPE FA+NREL+VIH+RWAMLG L C FKAG
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGEAVWFKAG 60
Query: 99 AQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
AQIFSEGGLDYL NP+L+HAQSILA+WA QV+LMG V GY GGPLGE D +
Sbjct: 61 AQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKV 114
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/108 (70%), Positives = 80/108 (74%), Gaps = 18/108 (16%)
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH RWAMLG L C FKAGAQIFSE
Sbjct: 2 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 61
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDPL
Sbjct: 62 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPL 109
>gi|302856917|ref|XP_002959743.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
gi|300254465|gb|EFJ39192.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
Length = 179
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/123 (61%), Positives = 85/123 (69%), Gaps = 19/123 (15%)
Query: 26 SSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
SSG +WYGP+R K+L P S A P YLTGEFPGDYGWDTA LSADPE F + REL++IHA
Sbjct: 32 SSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHA 91
Query: 85 RWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
RWAMLG L C FKAGAQIF EGGLDYL N SL+HAQ+I+A A
Sbjct: 92 RWAMLGALGCVTPKLLSKNGVQFSEALWFKAGAQIFQEGGLDYLGNLSLVHAQNIVATLA 151
Query: 127 IQV 129
QV
Sbjct: 152 CQV 154
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 101/166 (60%), Gaps = 26/166 (15%)
Query: 13 ITMR---KTAGKPKPVSSGS-QWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLS 67
IT R K+A K V+ S ++YGPDR K+L P S GA P YL GEFPGDYGWDTA LS
Sbjct: 14 ITARQSTKSAKARKQVTRASVEFYGPDRAKFLGPFSEGAVPSYLKGEFPGDYGWDTAGLS 73
Query: 68 ADPEIFAKNRELKVIHARWAMLGVLCC--------------------FKAGAQIFSEGGL 107
ADPE FA+ RE+++IH+RWA+LG L FKAGA IF + GL
Sbjct: 74 ADPETFARYREIELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDDGL 133
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
+YL NP LIHAQSI+A Q++L+G Y AG GP+ D L
Sbjct: 134 NYLGNPQLIHAQSIVATLLAQIVLVGTAEAYRYAGEGPVDTSGDKL 179
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 89/180 (49%), Positives = 102/180 (56%), Gaps = 37/180 (20%)
Query: 6 EIHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
++ G+G ITMRKT G+ +P + SGS WYGPDRV YL PLSG P YLTGEFPGDYGWDTA
Sbjct: 20 DVFGEGRITMRKTGGRARPTAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTA 79
Query: 65 CLSADPEIFAKNRELKVIHARWAMLGVL------CC-------------FKAGAQIFSEG 105
LSADPE FAKNREL+VIH RWAMLGV C FK GA +
Sbjct: 80 GLSADPETFAKNRELEVIHCRWAMLGVAGFIIPEACNKFGANCGPEAVWFKTGALLLDGN 139
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGG--------------PLGEVTDP 151
L+Y N I ILAV A +V+L+G Y G PLG +DP
Sbjct: 140 TLNYFGNS--IPINLILAVIA-EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDP 196
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 91/147 (61%), Gaps = 22/147 (14%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
RK+A K +S QWYGPDR K+L PL+G P YLTGE PGDYGWDTA L +DP A+
Sbjct: 85 RKSAPKSDNLS---QWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLAR 141
Query: 76 NRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLI 116
RE +VIHARWAMLG L +KAGAQIFS GL+YL NPSLI
Sbjct: 142 YREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLI 201
Query: 117 HAQSILAVWAIQVILMGAVGGYGTAGG 143
HAQS++ + + +MGAV Y GG
Sbjct: 202 HAQSVVLTFLSTLAIMGAVEAYRYGGG 228
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 91/142 (64%), Gaps = 17/142 (11%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
RK+A K +S QWYGPDR K+L PL+G P YLTGE PGDYGWDTA L +DP A+
Sbjct: 320 RKSAPKSDNLS---QWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLAR 376
Query: 76 NRELKVIHARWAML---------GV-----LCCFKAGAQIFSEGGLDYLENPSLIHAQSI 121
RE +VIHARWAML GV +KAGAQIFS GL+YL NPSLIHAQS+
Sbjct: 377 YREAEVIHARWAMLVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSV 436
Query: 122 LAVWAIQVILMGAVGGYGTAGG 143
+ + + +MGAV Y GG
Sbjct: 437 VLTFLSTLAIMGAVEAYRYGGG 458
>gi|93359558|gb|ABF13305.1| chloroplast chlorophyll a/b binding protein [Phaseolus vulgaris]
Length = 134
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 80/120 (66%), Gaps = 19/120 (15%)
Query: 42 PLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------- 94
P S P YL GEFPGDYGWDTA LSADPE FAKNR L+VIH RWAMLG L C
Sbjct: 1 PFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 60
Query: 95 ------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG 142
FKAGAQIFSEGGLDYL NP+L+HAQSILAV QV+LMG V G+ G
Sbjct: 61 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVVGFRING 120
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 90/147 (61%), Gaps = 20/147 (13%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
RK PK + SQWYGPDR K+L PL+G P YLTGE PGDYGWDTA L +DP A+
Sbjct: 120 RKAKAAPK-SDNLSQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLAR 178
Query: 76 NRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLI 116
RE +VIHARWAMLG L +KAGAQIFS GL+YL NPSLI
Sbjct: 179 YREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLI 238
Query: 117 HAQSILAVWAIQVILMGAVGGYGTAGG 143
HAQS++ + + +MGAV Y GG
Sbjct: 239 HAQSVVLTFLSTLAIMGAVEAYRYGGG 265
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 85/134 (63%), Gaps = 19/134 (14%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
SQWYGPDR K+L PL+G P YLTGE PGDYGWDTA L +DP A+ RE +VIHARWAM
Sbjct: 593 SQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAM 652
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L +KAGAQIFS GL+YL NPSLIHAQS++ + +
Sbjct: 653 LGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTL 712
Query: 130 ILMGAVGGYGTAGG 143
+MGAV Y GG
Sbjct: 713 AIMGAVEAYRYGGG 726
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 91/150 (60%), Gaps = 21/150 (14%)
Query: 24 PVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIH 83
P S ++ YGPDRVK+L +G P YLTGE PGDYGWDTA L ADP A+ R +VIH
Sbjct: 830 PFSPLNKLYGPDRVKWLGGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIH 889
Query: 84 ARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAV 124
RWAMLGVL C FKAGAQIFSE GL+YL P LIHAQS++
Sbjct: 890 GRWAMLGVLGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHAQSVVLT 949
Query: 125 WAIQVILMGAVGGYGTAG--GPLGEVTDPL 152
+ ++LMGAV Y +AG G G DPL
Sbjct: 950 FLSTLVLMGAVEAYRSAGSVGDFGADLDPL 979
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 99/168 (58%), Gaps = 30/168 (17%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKN 76
T+G ++GS+WYGP+R K+L PLSGGA P YL GE+ GDYG+DTA L+ADP++F +
Sbjct: 346 TSGFAMFAATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRY 405
Query: 77 RELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIH 117
R+ ++ + RWAMLGVL C FK GA I + G +DYL NP LIH
Sbjct: 406 RDAELQNGRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIH 465
Query: 118 AQSILAVWAIQVILMGAVGGYGTAG-GPLGE---------VTDPLSLS 155
A ++L ++++ A + AG GPLG+ V DPL LS
Sbjct: 466 ASNLLLTLVLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLS 513
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 91/146 (62%), Gaps = 15/146 (10%)
Query: 21 KPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELK 80
K K S S WYG DR YL + +P YL GEFPGDYGWDTA LSADPE F++ RE++
Sbjct: 56 KAKSASGASFWYGADRPGYLGAFTR-SPSYLNGEFPGDYGWDTAGLSADPETFSRYREIE 114
Query: 81 VIHARWAMLGVLCC--------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
VIHARWAMLG L F AGA IF G+ YL P LI+A++I+A A
Sbjct: 115 VIHARWAMLGALGIVVPELLDQTNHVAWFDAGATIFGPKGIQYLGVPGLINAKNIIATVA 174
Query: 127 IQVILMGAVGGYGTAGGPLGEVTDPL 152
+QVILMGA+ GY GGP GE D +
Sbjct: 175 VQVILMGAIEGYRVNGGPAGEGLDKV 200
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 91/147 (61%), Gaps = 22/147 (14%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
RK+A K +S QWYGPDR K+L PL+G P YLTGE PGDYGWDTA L +DP A+
Sbjct: 33 RKSAPKSDNLS---QWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLAR 89
Query: 76 NRELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLI 116
RE +VIHARWAMLG L +KAGAQIFS GL+YL NPSLI
Sbjct: 90 YREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLI 149
Query: 117 HAQSILAVWAIQVILMGAVGGYGTAGG 143
HAQS++ + + +MGAV Y GG
Sbjct: 150 HAQSVVLTFLSTLAIMGAVEAYRYGGG 176
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 56/77 (72%), Gaps = 3/77 (3%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
RK+A K +S QWYGPDR K+L PL+G P YLTGE PGDYGWDTA L +DP A+
Sbjct: 268 RKSAPKSDNLS---QWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLAR 324
Query: 76 NRELKVIHARWAMLGVL 92
RE +VIHARWAMLG L
Sbjct: 325 YREAEVIHARWAMLGAL 341
>gi|449527935|ref|XP_004170963.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like, partial [Cucumis sativus]
Length = 117
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDT 63
A EI G TMRKTA K VSSGS WYGPDRVKYL P SG P YLTGEFPGDYGWDT
Sbjct: 24 APEIQGNAKFTMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 81
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
A LSADPE FAKNREL+VIH+RWAMLG L C
Sbjct: 82 AGLSADPETFAKNRELEVIHSRWAMLGALGC 112
>gi|222641394|gb|EEE69526.1| hypothetical protein OsJ_28989 [Oryza sativa Japonica Group]
Length = 225
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/122 (61%), Positives = 82/122 (67%), Gaps = 19/122 (15%)
Query: 4 ASEIHGKGCITMRKTAGKPKPV-SSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
+S + G+ ITMRKTA KPKP SSGS WYG DRV YL PLSG P YLTGEFPGDYGWD
Sbjct: 16 SSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWD 75
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSE 104
TA LSADPE FAKNREL+VIH+RWAMLG L C FKAG+Q+
Sbjct: 76 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQVLQG 135
Query: 105 GG 106
G
Sbjct: 136 RG 137
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 93/164 (56%), Gaps = 37/164 (22%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
SQWYGPDR K+L PL+G P YLTGE PGDYGWDTA L +DP A+ RE +VIHARWAM
Sbjct: 389 SQWYGPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAM 448
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L +KAGAQIFS GL+YL NPSLIHAQS++ + +
Sbjct: 449 LGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTL 508
Query: 130 ILMGAVGGYGTAGG------------------PLGEVTDPLSLS 155
+MGAV Y GG PLG DP +L+
Sbjct: 509 AIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALA 552
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 99/168 (58%), Gaps = 30/168 (17%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTACLSADPEIFAKN 76
T+G ++GS+WYGP+R K+L PLSGGA P YL GE+ GDYG+DTA L+ADP++F +
Sbjct: 142 TSGFAMFAATGSKWYGPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRY 201
Query: 77 RELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIH 117
R+ ++ + RWAMLGVL C FK GA I + G +DYL NP LIH
Sbjct: 202 RDAELQNGRWAMLGVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIH 261
Query: 118 AQSILAVWAIQVILMGAVGGYGTAG-GPLGE---------VTDPLSLS 155
A ++L ++++ A + AG GPLG+ V DPL LS
Sbjct: 262 ASNLLLTLVLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLS 309
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 18/79 (22%)
Query: 95 FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGG----------- 143
+KAGAQIFS GL+YL NPSLIHAQS++ + + +MGAV Y GG
Sbjct: 13 YKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTL 72
Query: 144 -------PLGEVTDPLSLS 155
PLG DP +L+
Sbjct: 73 YPGGPFDPLGLANDPDALA 91
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 98/173 (56%), Gaps = 23/173 (13%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S AASE+ G G ITMRK + P SGS WYG DRVKYL P SG P YLTGEFPGDYG
Sbjct: 21 SPAASEVFGTGRITMRKASKPTGP--SGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC----------FKAGAQIFSEGGLDYL 110
WDTA LSADPE FA+NREL+VIH+RWAMLG L C K G ++ +G L
Sbjct: 79 WDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWVQGWFTDL 138
Query: 111 EN---------PSLIHAQSILAVWAIQVILMGAV--GGYGTAGGPLGEVTDPL 152
+ PSL+HAQ + G++ GPLGE D L
Sbjct: 139 QRRRIGPTWATPSLVHAQEHFSHLGYSSYPHGSLLRATRVPGNGPLGEAEDLL 191
>gi|693924|gb|AAA80595.1| chlorophyll a/b binding protein, partial [Solanum tuberosum]
Length = 135
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 72/94 (76%), Gaps = 2/94 (2%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
S +ASEI G G ITMRK K P S S WYGPDRVKYL P SG +P YLTGEFPGDYG
Sbjct: 21 SPSASEITGNGRITMRKAVAKSAP--SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 78
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
WDTA LSADPE FAKNREL+VIH RWAMLG L C
Sbjct: 79 WDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 112
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/134 (58%), Positives = 85/134 (63%), Gaps = 29/134 (21%)
Query: 51 LTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC---------------- 94
LTGEFPGDYGWDTA LSADPE FAKNR L+VIH RWAMLG L C
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 95 ---FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG--------- 142
FKAGAQIFSEGGLDYL NP+L+HAQSILAV QV+LMG V G+ G
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNN 120
Query: 143 -GPLGEVTDPLSLS 155
P G+ DPL L+
Sbjct: 121 LYPGGQYFDPLGLA 134
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 89/144 (61%), Gaps = 21/144 (14%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+Q+YGPD D L P TGEFPGDYGWDTA LSADPE F + REL++IHAR +
Sbjct: 55 NQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGL 113
Query: 89 LGVLCC--------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQ 128
LG L FKAGA IF +GGL+YL NPSLIHAQ+I+A A+Q
Sbjct: 114 LGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQ 173
Query: 129 VILMGAVGGYGTAGGPLGEVTDPL 152
V+LMG V GY GGP GE DPL
Sbjct: 174 VVLMGLVEGYRVNGGPAGEGLDPL 197
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 81/121 (66%), Gaps = 19/121 (15%)
Query: 51 LTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC---------------- 94
LTGEFPGDYGWDTA LSADPE F K RE ++IHARWAMLG L C
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 95 ---FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDP 151
F+AGAQIF +GGLDYL +P+LIHAQSI A+ QVILMG + GY GGP GE DP
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGLDP 120
Query: 152 L 152
L
Sbjct: 121 L 121
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 79/111 (71%), Gaps = 18/111 (16%)
Query: 60 GWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQI 101
GWDTA LSADPE FA+NREL+VIH+RWAMLG L C FKAG+QI
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQI 60
Query: 102 FSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
FSEGGLDYL NP+LIHAQSILA+WA QV+LMG + GY GGPLGE D +
Sbjct: 61 FSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKV 111
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/119 (58%), Positives = 78/119 (65%), Gaps = 18/119 (15%)
Query: 42 PLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF------ 95
PLS P YL GEFPGDYGWDTA LSADPE FA+ RE++VIHARWAMLG L C
Sbjct: 6 PLSSATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLS 65
Query: 96 ------------KAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG 142
KAGAQI S GLDYL P+L+HAQSI+A A+QVILMG+ Y AG
Sbjct: 66 QNGFTFQEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAAG 124
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/102 (68%), Positives = 75/102 (73%), Gaps = 18/102 (17%)
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
D E FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 1 DTETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYL 60
Query: 111 ENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
NPSLIHAQSILA+WA QV+LMGAV GY AGGPLGE+TDPL
Sbjct: 61 GNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPL 102
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 82/124 (66%), Gaps = 12/124 (9%)
Query: 15 MRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
MR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE FA
Sbjct: 1 MRRTVKS----TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA 56
Query: 75 KNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGA 134
KNREL+VIH RWAMLG L C +I S+ G+ + E A ILA+WA QV+LMG
Sbjct: 57 KNRELEVIHCRWAMLGALGC--VFPEILSKNGVKFGE------AVCILAIWACQVVLMGF 108
Query: 135 VGGY 138
V GY
Sbjct: 109 VEGY 112
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 93/175 (53%), Gaps = 38/175 (21%)
Query: 19 AGKPKPVSSGSQWYGPDRVKYLDPLSGG-APFYLTGEFPGDYGWDTACLSADPEIFAKNR 77
AG K + SQWYGPDR K+L P S P YL GE PGDYGWD+A L ADP + R
Sbjct: 213 AGGSKAPAGLSQWYGPDRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYR 272
Query: 78 ELKVIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHA 118
E ++IH RWAMLG L FKAGAQIFSEGGLDYL + L+HA
Sbjct: 273 EAELIHGRWAMLGALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHA 332
Query: 119 QSILAVWAIQVILMGAVGGYGTAGG------------------PLGEVTDPLSLS 155
QSIL + QV+LMGA Y T G PLG DP +L+
Sbjct: 333 QSILLILGTQVLLMGAAEAYRTGNGLGNFGKDLDSLYPGGPFDPLGLANDPDTLA 387
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 88/147 (59%), Gaps = 23/147 (15%)
Query: 29 SQWYGPDRVKYLDPLSG-GAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWA 87
S WYGP+R K+L P S P YLTGE PGDYGWDTA L ADP + RE ++IH RWA
Sbjct: 466 SAWYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWA 525
Query: 88 MLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQ 128
MLG + C FKAGAQIFS GL+Y P+LIHA+S+LA+ A Q
Sbjct: 526 MLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQ 585
Query: 129 VILMGAVGGY---GTAGGPLGEVTDPL 152
V+LMGAV Y TA G GE D L
Sbjct: 586 VLLMGAVEAYRAGNTAPGQFGEDLDRL 612
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 76/127 (59%), Gaps = 22/127 (17%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------- 94
P YLTGE PGDYGWDTA L ADP + RE ++IH RWAMLG + C
Sbjct: 2 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 61
Query: 95 ------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGY---GTAGGPL 145
FKAGAQIFS GL+Y P+LIHA+S+LA+ A QV+LMGAV Y TA G
Sbjct: 62 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQF 121
Query: 146 GEVTDPL 152
GE D L
Sbjct: 122 GEDLDRL 128
>gi|414881721|tpg|DAA58852.1| TPA: chlorophyll a-b binding protein 2, mRNA [Zea mays]
Length = 311
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 67/82 (81%)
Query: 5 SEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTA 64
++ G+G ITMRKTA KPKP +SGS WYG DRV YL PLSG P YLTGEFPGDYGWDTA
Sbjct: 22 RDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTA 81
Query: 65 CLSADPEIFAKNRELKVIHARW 86
LSADPE FAKNREL+VIH RW
Sbjct: 82 GLSADPETFAKNRELEVIHCRW 103
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 88/147 (59%), Gaps = 23/147 (15%)
Query: 29 SQWYGPDRVKYLDPLSG-GAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWA 87
S WYGP+R K+L P S P YLTGE PGDYGWDTA L ADP + RE ++IH RWA
Sbjct: 239 SAWYGPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWA 298
Query: 88 MLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQ 128
MLG + C FKAGAQIFS GL+Y P+LIHA+S+LA+ A Q
Sbjct: 299 MLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQ 358
Query: 129 VILMGAVGGY---GTAGGPLGEVTDPL 152
V+LMGAV Y TA G GE D L
Sbjct: 359 VLLMGAVEAYRAGNTAPGQFGEDLDRL 385
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 84/160 (52%), Gaps = 38/160 (23%)
Query: 34 PDRVKYLDPLSGG-APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
PDR K+L P S P YL GE PGDYGWD+A L ADP + RE ++IH RWAMLG L
Sbjct: 1 PDRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGAL 60
Query: 93 CC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMG 133
FKAGAQIFSEGGLDYL + L+HAQSIL + QV+LMG
Sbjct: 61 GVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMG 120
Query: 134 AVGGYGTAGG------------------PLGEVTDPLSLS 155
A Y T G PLG DP +L+
Sbjct: 121 AAEAYRTGNGLGNFGKDLDSLYPGGPFDPLGLANDPDTLA 160
>gi|210162116|gb|ACJ09656.1| putative chloroplast light harvesting chlorophyll a/b binding
protein [Cupressus sempervirens]
Length = 169
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 104/153 (67%), Gaps = 25/153 (16%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
+TMRK A +S S WYGPDRV YL+P SG P YLTGEFPGDY WDTA L ADPE
Sbjct: 4 VTMRK-ATTVSVSASTSPWYGPDRVLYLEP-SGEPPSYLTGEFPGDY-WDTARL-ADPET 59
Query: 73 FAKNRELKVIHARWAMLGVLCC---------FKA----GAQIFSEGGLDYLENPSLIHAQ 119
AKNREL+VIH R +MLG L C F+A GAQI GLDYL PSL+HAQ
Sbjct: 60 -AKNRELEVIHCR-SMLGALGCVELLARNGVFEAVWFNGAQI--SVGLDYL--PSLVHAQ 113
Query: 120 SILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SILA+ + QVILMGAV GY A GPLG VTDP+
Sbjct: 114 SILAI-SCQVILMGAVEGYRIASGPLG-VTDPI 144
>gi|428230868|gb|AFY99056.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 107
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/100 (66%), Positives = 74/100 (74%), Gaps = 18/100 (18%)
Query: 57 GDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAG 98
GDYGWDTA LSADPE FAKNREL+VIH+RWAMLG L C FKAG
Sbjct: 7 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG 66
Query: 99 AQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGY 138
+QIFSEGGLDYL NP+L+HAQSILA+WA QV+LMG + GY
Sbjct: 67 SQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGY 106
>gi|169261096|gb|ACA52196.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 109
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 67/83 (80%), Gaps = 3/83 (3%)
Query: 6 EIHGKGCITMRKTAGKPKPV---SSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
E+ G G +TMRKTAGK K SSGS WYGPDRVKYL P SG +P YLTGEFPGDYGWD
Sbjct: 27 EVLGTGKVTMRKTAGKTKQTKSASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 86
Query: 63 TACLSADPEIFAKNRELKVIHAR 85
TA LSADPE FAKNREL+VIH+R
Sbjct: 87 TAGLSADPETFAKNRELEVIHSR 109
>gi|308154410|gb|ADO15273.1| light harvesting complex from photosystem I type b [Oxytropis
splendens]
Length = 97
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 72/97 (74%), Gaps = 18/97 (18%)
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPS 114
FAKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NPS
Sbjct: 1 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS 60
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDP 151
L+HAQSILA+WA+QVILMGAV GY AGGPLGEV DP
Sbjct: 61 LVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDP 97
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 87/138 (63%), Gaps = 19/138 (13%)
Query: 34 PDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLC 93
P+R +L P +G P YL G GDYGWDT+ LS PE +NREL+++HARWAMLG L
Sbjct: 23 PERPLWLGPYTGATPSYLDGSLVGDYGWDTSGLSTTPEALLRNRELELLHARWAMLGALG 82
Query: 94 C-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGA 134
FKAGAQIFS GGLDYL NPSL+HAQSILA+ QV+LMG
Sbjct: 83 SLLPELLATYAGTPLLEPVWFKAGAQIFSPGGLDYLGNPSLVHAQSILAILGFQVLLMGL 142
Query: 135 VGGYGTAGGPLGEVTDPL 152
GY AGGPLGEV D L
Sbjct: 143 SEGYRLAGGPLGEVGDAL 160
>gi|145078729|tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Euglena gracilis]
Length = 244
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 85/141 (60%), Gaps = 19/141 (13%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
S WYGP+R +L PLS GAP +L GE PGDYG+D L+ P + R+ ++I+ RWAM
Sbjct: 102 SDWYGPNRKLFLGPLSDGAPEHLKGELPGDYGFDVLGLATQPTRLERYRQGEIINGRWAM 161
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG++ C FK GA +FSE GL+YL NPSLIHA+SI A+ ++
Sbjct: 162 LGIVGCIVPELLARNYGVPFPEPVWFKTGATVFSEEGLNYLGNPSLIHAKSIAAILVTEI 221
Query: 130 ILMGAVGGYGTAGGPLGEVTD 150
+ +GA + +GGPLG TD
Sbjct: 222 LFVGAAEAFRVSGGPLGPATD 242
>gi|308154406|gb|ADO15271.1| light harvesting complex from photosystem I type b [Oxytropis
campestris subsp. johannensis]
gi|308154408|gb|ADO15272.1| light harvesting complex from photosystem I type b [Oxytropis
maydelliana]
gi|308154412|gb|ADO15274.1| light harvesting complex from photosystem I type b [Oxytropis
arctobia]
Length = 96
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 71/96 (73%), Gaps = 18/96 (18%)
Query: 74 AKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSL 115
AKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NPSL
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL 60
Query: 116 IHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDP 151
+HAQSILA+WA+QVILMGAV GY AGGPLGEV DP
Sbjct: 61 VHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDP 96
>gi|222618804|gb|EEE54936.1| hypothetical protein OsJ_02493 [Oryza sativa Japonica Group]
Length = 207
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 92/150 (61%), Gaps = 36/150 (24%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
AA+++ G+G ITMRK+A KPKP +SGS W+ + G
Sbjct: 17 AAAKVFGEGRITMRKSAAKPKPAASGSPWWA-----------------MLGAL------- 52
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSIL 122
C+ PE+ A+N +K A W FKAG+QIFSEGGLDYL NPSLIHAQSIL
Sbjct: 53 -GCVF--PELLARN-GVKFGEAVW--------FKAGSQIFSEGGLDYLGNPSLIHAQSIL 100
Query: 123 AVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
A+WA+QV+LMGAV GY AGGPLGEV DPL
Sbjct: 101 AIWAVQVVLMGAVEGYRIAGGPLGEVVDPL 130
>gi|413933709|gb|AFW68260.1| hypothetical protein ZEAMMB73_510715 [Zea mays]
Length = 144
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/116 (60%), Positives = 74/116 (63%), Gaps = 22/116 (18%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T K P S WY PDR KYL P S YLTGEFPGDYGWDTA LSAD E
Sbjct: 30 ITMRRTV-KSAP---QSIWYDPDRPKYLAPFSEQTSSYLTGEFPGDYGWDTAGLSADHET 85
Query: 73 FAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYL 110
FA+NREL+VIH+ WAMLG L C FKAGAQIFSEGGLDYL
Sbjct: 86 FARNRELEVIHSWWAMLGALGCVFPEVLAKNDVKFGEVVWFKAGAQIFSEGGLDYL 141
>gi|212721622|ref|NP_001132387.1| light harvesting complex mesophyll7 [Zea mays]
gi|194694246|gb|ACF81207.1| unknown [Zea mays]
Length = 185
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 102/167 (61%), Gaps = 20/167 (11%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDY 59
++ +S G+ +TMRKTA K KP + SGS WYGPDRV YL PLSG P YLTGEFPGDY
Sbjct: 19 NVPSSSAFGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDY 78
Query: 60 GWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC-----FKAGAQIFSEGGLDYLENPS 114
GWDTA LSADPE FAKNREL+VIH+RWAMLG L C + F+E + L+N
Sbjct: 79 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLADDPEAFAELKVKELKNGR 138
Query: 115 LIHAQSILAVWAIQVILMGAVGGYGTAGGPL----GEVTDPLSLSWW 157
L A + + +Q I+ G GPL + DP++ + W
Sbjct: 139 L--AMFSMFGFFVQAIVTGK--------GPLENLADHIADPVNNNAW 175
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 78/127 (61%), Gaps = 29/127 (22%)
Query: 58 DYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAG 98
DYGWDTA LSADPE FA+NR L+VIH RWAMLG L C FKAG
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 99 AQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG----------GPLGEV 148
AQIFSEGGLDYL NP+L+HAQSILAV QV+LMG V G+ G P G+
Sbjct: 61 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQY 120
Query: 149 TDPLSLS 155
DPL L+
Sbjct: 121 FDPLGLA 127
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 78/127 (61%), Gaps = 29/127 (22%)
Query: 58 DYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC-------------------FKAG 98
DYGWDTA LSADPE FAKNR L+VIH RWAMLG L C FKAG
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 99 AQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG----------GPLGEV 148
AQIF+EGGLDYL NP+L+HAQSILAV QV++MG V G+ G P G+
Sbjct: 61 AQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVVMGLVEGFRINGLDGVGEGNDLYPGGQY 120
Query: 149 TDPLSLS 155
DPL L+
Sbjct: 121 FDPLGLA 127
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 87/144 (60%), Gaps = 21/144 (14%)
Query: 30 QWYGPDRVKYL-DPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L D G P YLTGE+PGDYGWD LS+DPE FA RE +++HARWAM
Sbjct: 124 EWYGPDRPKWLPDAFLAGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAM 183
Query: 89 LGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C FKAGA + ++ +DYL +P L+HA SI+A+ A QV
Sbjct: 184 LGALGCIFPEILAMNYGVGLEEPVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAAAQV 243
Query: 130 ILMGAVGGYGTAG-GPLGEVTDPL 152
+LMG Y +G P GE D +
Sbjct: 244 LLMGGAEAYRASGVAPNGEEFDKM 267
>gi|169261112|gb|ACA52204.1| chloroplast photosystem II type I chlorophyll A/B-binding protein
[Oenothera grandiflora]
Length = 103
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 59/76 (77%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G G +TMRK K +S S WYGPDRVKYL P SG AP YLTGEFPGDYGWDTA LSA
Sbjct: 28 GNGRVTMRKATPKKAAATSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSA 87
Query: 69 DPEIFAKNRELKVIHA 84
DPE FAKNREL+VIH+
Sbjct: 88 DPETFAKNRELEVIHS 103
>gi|9719392|gb|AAF97781.1| chlorophyll a/b-binding protein [Picea glauca]
Length = 151
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 61/82 (74%), Gaps = 4/82 (4%)
Query: 13 ITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI 72
ITMR+T + S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADPE
Sbjct: 36 ITMRRTVRS----APESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET 91
Query: 73 FAKNRELKVIHARWAMLGVLCC 94
FAKNREL+VIH+RWAMLG L C
Sbjct: 92 FAKNRELEVIHSRWAMLGALGC 113
>gi|108709620|gb|ABF97415.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 118
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 63/84 (75%), Gaps = 4/84 (4%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G ITMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSADP
Sbjct: 31 GRITMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP 86
Query: 71 EIFAKNRELKVIHARWAMLGVLCC 94
E FA+NREL+VIH+RWAMLG L C
Sbjct: 87 ETFARNRELEVIHSRWAMLGALGC 110
>gi|305377034|dbj|BAJ15880.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 96
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 66/93 (70%), Gaps = 18/93 (19%)
Query: 70 PEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLE 111
PE FAKNREL+VIH RWAMLG L C FKAG+QIFSEGGLDYL
Sbjct: 1 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLG 60
Query: 112 NPSLIHAQSILAVWAIQVILMGAVGGYGTAGGP 144
NPSLIHAQSILA+WA QVILMGAV GY AGGP
Sbjct: 61 NPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 93
>gi|16225450|gb|AAL15892.1|AF417304_1 putative chlorophyll-A-B-binding protein [Castanea sativa]
Length = 120
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 62/84 (73%), Gaps = 4/84 (4%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G +TMR+T K P S WYGPDR KYL P S P YLTGEFP DYGWDTA LSADP
Sbjct: 33 GRVTMRRTV-KSAPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPEDYGWDTAGLSADP 88
Query: 71 EIFAKNRELKVIHARWAMLGVLCC 94
E FAKNREL+VIH+RWAMLG L C
Sbjct: 89 ETFAKNRELEVIHSRWAMLGALGC 112
>gi|169261110|gb|ACA52203.1| chloroplast photosystem II type I chlorophyll A/B-binding protein
[Oenothera elata subsp. hookeri]
Length = 103
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 58/75 (77%)
Query: 10 KGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSAD 69
G +TMRK K +S S WYGPDRVKYL P SG AP YLTGEFPGDYGWDTA LSAD
Sbjct: 29 NGRVTMRKATPKKAAATSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSAD 88
Query: 70 PEIFAKNRELKVIHA 84
PE FAKNREL+VIH+
Sbjct: 89 PETFAKNRELEVIHS 103
>gi|22003726|gb|AAM88863.1|AF526508_1 A-B binding protein [Vicia faba]
Length = 136
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 63/86 (73%), Gaps = 4/86 (4%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
G+ TMR+T K P S WYGPDR KYL P S P YLTGEFPGDYGWDTA LSA
Sbjct: 28 GQSRFTMRRTV-KSAPESI---WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSA 83
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC 94
DPE FA+NREL+VIH+RWAMLG L C
Sbjct: 84 DPETFARNRELEVIHSRWAMLGALGC 109
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 79/154 (51%), Gaps = 51/154 (33%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYGPDRVKYL P S PF FA+NR L+VIH RWAMLG
Sbjct: 48 WYGPDRVKYLGPFSAQTPF----------------------AFARNRALEVIHGRWAMLG 85
Query: 91 VLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVIL 131
L C FKAGAQIFSEGGLDYL NP+L+HAQSILAV QV+L
Sbjct: 86 ALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 145
Query: 132 MGAVGGYGTAG----------GPLGEVTDPLSLS 155
MG V G+ G P G+ DPL L+
Sbjct: 146 MGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLA 179
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 74/124 (59%), Gaps = 20/124 (16%)
Query: 30 QWYGPDRVKYL-DPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+WYGPDR K+L D G P YLTGE+PGDYGWD LSADP+ FA RE +++HARWAM
Sbjct: 119 EWYGPDRPKWLPDAFLAGVPDYLTGEYPGDYGWDALGLSADPQNFANYREAELLHARWAM 178
Query: 89 LGVLCCF-------------------KAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
LG L C KAGA + + +DYL + IHA SI+A+ QV
Sbjct: 179 LGALGCVFPEVINSYYNGNIAEPVWWKAGALVLNGQSIDYLGSDKFIHASSIIAIAGAQV 238
Query: 130 ILMG 133
+LMG
Sbjct: 239 VLMG 242
>gi|210162154|gb|ACJ09675.1| putative chlorophyll a/b-binding protein [Cupressus sempervirens]
Length = 129
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/119 (58%), Positives = 76/119 (63%), Gaps = 18/119 (15%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WY DRV YL P+S P YLTGEF DYG DTA S D E AKNREL+VIH+R +ML
Sbjct: 14 WYEQDRVLYLTPMSE-PPSYLTGEFTSDYGCDTAS-STDTETCAKNRELEVIHSR-SMLS 70
Query: 91 VLCCFKAGAQ--------------IFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAV 135
L C A A +FSEGGLDYL SLIHAQSILA+WA QVILMGAV
Sbjct: 71 ALRCVVALATYGVSIVEAVWFAGALFSEGGLDYL-GSSLIHAQSILAIWACQVILMGAV 128
>gi|6440899|dbj|BAA78594.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 155
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 69/110 (62%), Gaps = 16/110 (14%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
+KT K +G++WYGPDR K+L P P YLTGEFPGDYGWDTA LSA ++ K
Sbjct: 47 KKTVSKKPSGPAGAEWYGPDRPKWLGPFFQNTPSYLTGEFPGDYGWDTAGLSATGDL-RK 105
Query: 76 NRELKVIHARWAMLGVLCC---------------FKAGAQIFSEGGLDYL 110
R ++VIH RW MLG L C FKAGAQIFSEGGLDYL
Sbjct: 106 YRTIEVIHGRWPMLGALGCLVPELIKGDIAEPVWFKAGAQIFSEGGLDYL 155
>gi|2570511|gb|AAB82141.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 304
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 51/69 (73%)
Query: 27 SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
S WYGPDRV YL P S P YL GEFPGDYGWDTA LSADPE FA+NR L+VIH RW
Sbjct: 44 SKELWYGPDRVNYLGPFSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRW 103
Query: 87 AMLGVLCCF 95
AMLG L C
Sbjct: 104 AMLGALGCI 112
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 61/90 (67%), Gaps = 18/90 (20%)
Query: 81 VIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSIL 122
VIH+RWAMLG L C FKAGAQIFSEGGLDYL NP+LIHAQSIL
Sbjct: 1 VIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIL 60
Query: 123 AVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
A+WA QV+LMG V GY GGPLGE DPL
Sbjct: 61 AIWATQVVLMGFVEGYRIGGGPLGEGLDPL 90
>gi|413946552|gb|AFW79201.1| light harvesting complex mesophyll7 [Zea mays]
Length = 244
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVS-SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDY 59
++ +S G+ +TMRKTA K KP + SGS WYGPDRV YL PLSG P YLTGEFPGDY
Sbjct: 19 NVPSSSAFGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDY 78
Query: 60 GWDTACLSADPEIFAKNRELKVIHA 84
GWDTA LSADPE FAKNREL+VIH+
Sbjct: 79 GWDTAGLSADPETFAKNRELEVIHS 103
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 63/83 (75%), Gaps = 9/83 (10%)
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
PE+ A+N +K A W FKAG+QIFSEGGLDYL NPSLIHAQSILA+WA+QV
Sbjct: 10 PELLARNG-VKFGEAVW--------FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQV 60
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
+LMGAV GY AGGPLGEV DPL
Sbjct: 61 VLMGAVEGYRVAGGPLGEVVDPL 83
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 62/83 (74%), Gaps = 9/83 (10%)
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
PE+ A+N +K A W FKAG+QIFSEGGLDYL NPSL+HAQSIL +WA QV
Sbjct: 10 PELLARNG-VKFGEAVW--------FKAGSQIFSEGGLDYLGNPSLVHAQSILVIWATQV 60
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
ILMGAV GY AGGPLGEVTDPL
Sbjct: 61 ILMGAVEGYRIAGGPLGEVTDPL 83
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 69/110 (62%), Gaps = 21/110 (19%)
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEG 105
A LSADP+ FA+ RE++VIHARWAMLG L C FKAGAQIF +G
Sbjct: 1 AGLSADPQTFARYREIEVIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFQDG 60
Query: 106 GLDYLENPSLIHAQSILAVWAIQVILMGAVGGY---GTAGGPLGEVTDPL 152
GL+YL N SL+HAQSILA A+QV+LMGA Y G A G GE D L
Sbjct: 61 GLNYLGNESLVHAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDLDSL 110
>gi|302143545|emb|CBI22106.3| unnamed protein product [Vitis vinifera]
Length = 147
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 71/136 (52%), Gaps = 41/136 (30%)
Query: 15 MRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
MRK+ K K VSSGS WYGPDRVKYL P S ADPE FA
Sbjct: 1 MRKSVAKSKAVSSGSPWYGPDRVKYLGPFS-----------------------ADPETFA 37
Query: 75 KNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGA 134
KNREL+VIH RWAMLG L C ++ S G+ + E VILMGA
Sbjct: 38 KNRELEVIHCRWAMLGALGC--VFPELLSRNGVKFGE----------------AVILMGA 79
Query: 135 VGGYGTAGGPLGEVTD 150
V GY AGGPLGEV +
Sbjct: 80 VEGYRIAGGPLGEVKE 95
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 62/83 (74%), Gaps = 9/83 (10%)
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
PE+ A+N +K A W FKAGAQIFSEGGLDYL NPSL+HAQSILA+WA QV
Sbjct: 6 PELLARNG-VKFGEAVW--------FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQV 56
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
+LMGAV GY AGGPLGEV DPL
Sbjct: 57 LLMGAVEGYRVAGGPLGEVVDPL 79
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 62/83 (74%), Gaps = 9/83 (10%)
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
PE+ A+N +K A W FKAG+QIFSEGGLDYL NPSL+HAQSILA+WA QV
Sbjct: 5 PELLARNG-VKFGEAVW--------FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 55
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
+LMGAV GY AGGPLGE+ DPL
Sbjct: 56 VLMGAVEGYRVAGGPLGEIVDPL 78
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 62/83 (74%), Gaps = 9/83 (10%)
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
PE+ A+N +K A W FKAG+QIFSEGGLDYL NPSLIHAQSILA+WA QV
Sbjct: 10 PELLARNG-VKFGEAVW--------FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 60
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
+LMGA+ GY AGGPLGEV DPL
Sbjct: 61 VLMGAIEGYRVAGGPLGEVVDPL 83
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 54/64 (84%)
Query: 89 LGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEV 148
G FKAG+QIFSEGGLDYL NPSLIHAQSILA+WA+QV+LMGAV GY AGGPLGEV
Sbjct: 4 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEV 63
Query: 149 TDPL 152
DPL
Sbjct: 64 VDPL 67
>gi|361068309|gb|AEW08466.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
Length = 83
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 59/83 (71%), Gaps = 18/83 (21%)
Query: 74 AKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSL 115
AKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NP+L
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 60
Query: 116 IHAQSILAVWAIQVILMGAVGGY 138
IHAQSILA+WA QV+LMG + GY
Sbjct: 61 IHAQSILAIWACQVVLMGLIEGY 83
>gi|89574390|gb|ABD77412.1| chloroplast chlorophyll a/b-binding protein [Zingiber officinale]
Length = 130
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 62/83 (74%), Gaps = 9/83 (10%)
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
PE+ ++N +K A W FKAG+QIFSEGGLDYL NPSLIHAQSILA+WA QV
Sbjct: 25 PELLSRNG-VKFGEAVW--------FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQV 75
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
+LMGAV GY AGGPLGEV DPL
Sbjct: 76 VLMGAVEGYRVAGGPLGEVVDPL 98
>gi|383145055|gb|AFG54073.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145056|gb|AFG54074.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145057|gb|AFG54075.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145058|gb|AFG54076.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145059|gb|AFG54077.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145060|gb|AFG54078.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145061|gb|AFG54079.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145062|gb|AFG54080.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145063|gb|AFG54081.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145064|gb|AFG54082.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145065|gb|AFG54083.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145066|gb|AFG54084.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145067|gb|AFG54085.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145068|gb|AFG54086.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145069|gb|AFG54087.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145070|gb|AFG54088.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145071|gb|AFG54089.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
gi|383145072|gb|AFG54090.1| Pinus taeda anonymous locus CL14Contig4_03 genomic sequence
Length = 83
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 59/83 (71%), Gaps = 18/83 (21%)
Query: 74 AKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENPSL 115
AKNREL+VIH+RWAMLG L C FKAGAQIFSEGGLDYL NP+L
Sbjct: 1 AKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL 60
Query: 116 IHAQSILAVWAIQVILMGAVGGY 138
IHAQSILA+WA QV+LMG + GY
Sbjct: 61 IHAQSILAIWACQVVLMGLIEGY 83
>gi|169261094|gb|ACA52195.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata
subsp. hookeri]
Length = 94
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 53/68 (77%), Gaps = 3/68 (4%)
Query: 6 EIHGKGCITMRKTAGKPKPV---SSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
E+ G G +TMRKTAGK K SSGS WYGPDRVKYL P SG +P YLTGEFPGDYGWD
Sbjct: 27 EVLGTGKVTMRKTAGKTKQTKSASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 86
Query: 63 TACLSADP 70
TA LSADP
Sbjct: 87 TAGLSADP 94
>gi|449479523|ref|XP_004155624.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 153
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/58 (82%), Positives = 53/58 (91%)
Query: 95 FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
FKAG+QIFSEGGLDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEVTDP+
Sbjct: 19 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI 76
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 84/167 (50%), Gaps = 37/167 (22%)
Query: 29 SQWYGPDRVKYLDPLSG--GAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
+ +YGP+R + P + P YL GE+PGDYG D L PE +AK R ++++ RW
Sbjct: 11 TAYYGPNRPLWKGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAKLRSQELMNGRW 70
Query: 87 AMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQ 128
AMLG+ C FK GAQIFSE G+DYL P I+A S++AV +Q
Sbjct: 71 AMLGITGCLVPELINSNPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFINAHSLVAVIVVQ 130
Query: 129 VILMGAVGGY----------------GTAGGPLGEVTDPLSLSWWQL 159
+LMG V Y G A PLG +DP S + ++
Sbjct: 131 ALLMG-VAEYARIKLSPEGNDAFYPGGKAFDPLGFSSDPESFAELKV 176
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 59/83 (71%), Gaps = 9/83 (10%)
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
PEI +KN +K A W FKAG+QIFSEGGLDYL NP+LIHAQSILA+WA QV
Sbjct: 10 PEILSKNG-VKFGEAVW--------FKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQV 60
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
+LMG + GY GGPLGE DPL
Sbjct: 61 VLMGFIEGYRIGGGPLGEGLDPL 83
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 58/83 (69%), Gaps = 9/83 (10%)
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
PE+ AK +K A W FKAGAQIFSEGGLDYL NP+LIHAQSILA+WA QV
Sbjct: 10 PELLAKTG-VKFGEAVW--------FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQV 60
Query: 130 ILMGAVGGYGTAGGPLGEVTDPL 152
+LMG + GY GGPLGE DPL
Sbjct: 61 VLMGLIEGYRVGGGPLGEGLDPL 83
>gi|115790|sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP
gi|169376|gb|AAA33776.1| chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 49/58 (84%)
Query: 95 FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
FKAGAQIFSEGGLDYL NP+LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 16 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPL 73
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 49/58 (84%)
Query: 95 FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
FKAG+QIFSEGGLDYL NP+LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 4 FKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPL 61
>gi|209778961|gb|ACI87791.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 124
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 49/58 (84%)
Query: 95 FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
FKAG+QIFSEGGLDYL NP+LIHAQSILA+WA QV+LMG + GY GGPLGE DPL
Sbjct: 9 FKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPL 66
>gi|169199|gb|AAA33703.1| Major Cab protein [Petunia x hybrida]
Length = 136
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/56 (82%), Positives = 48/56 (85%)
Query: 97 AGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
A +QIFSEG LDYL NPSLIHAQSILAVWA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 4 AVSQIFSEGELDYLGNPSLIHAQSILAVWACQVVLMGAVEGYRVAGGPLGEVIDPL 59
>gi|116783810|gb|ABK23091.1| unknown [Picea sitchensis]
Length = 110
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 8 HGKGCITMRKTAGKPK-PVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
HG+ +TMRK GK SS S WYGPDRV YL P SG P YLTGEFPGDYGWDTA L
Sbjct: 38 HGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 67 SADPEI 72
SADPE
Sbjct: 98 SADPET 103
>gi|1165248|gb|AAA85589.1| chlorophyll a/b binding protein of PS II, partial [Picea abies]
Length = 131
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 48/53 (90%)
Query: 100 QIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
QIFSEGGLDYL +P+L+HAQSILA+WA QVILMGA+ GY AGGPLGEVTDP+
Sbjct: 2 QIFSEGGLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI 54
>gi|86169487|gb|ABC86983.1| chlorophyll a/b binding protein [Brassica napus]
Length = 75
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 43/51 (84%)
Query: 44 SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
SG P YLTGEFPGDYGWDTA LSADPE FA+NREL+VIH RWAMLG L C
Sbjct: 1 SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGC 51
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/89 (56%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILA 123
CL+ PE+ +KN ++ A W FKAGAQIF EGGLDYL NPSL+HAQ+I+A
Sbjct: 2616 GCLT--PELLSKN-GVQFGEAVW--------FKAGAQIFQEGGLDYLGNPSLVHAQNIVA 2664
Query: 124 VWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
A QVILMG V GY GGP GE DPL
Sbjct: 2665 TLACQVILMGLVEGYRVNGGPAGEGLDPL 2693
>gi|169201|gb|AAA33704.1| Major Cab protein [Petunia x hybrida]
Length = 129
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 46/54 (85%)
Query: 99 AQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
+QIFSEG LDYL NPSL+HAQSILA WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 1 SQIFSEGELDYLGNPSLVHAQSILASWACQVVLMGAVEGYRVAGGPLGEVIDPL 54
>gi|8698905|gb|AAF78518.1|AF195221_1 chlorophyll a/b-binding protein [Pyrus pyrifolia]
Length = 79
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 55/76 (72%), Gaps = 9/76 (11%)
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
PE+ ++N +K A W FKAGAQIFSEGGL YL NPSL+HAQSILA+WA QV
Sbjct: 10 PELLSRN-GVKFGEAVW--------FKAGAQIFSEGGLGYLGNPSLVHAQSILAIWATQV 60
Query: 130 ILMGAVGGYGTAGGPL 145
+LMGAV GY AGGPL
Sbjct: 61 VLMGAVEGYRIAGGPL 76
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 20/123 (16%)
Query: 31 WYGPDRVKYLDPLSG--GAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
+YGP+R + P + P YL GE+PGDYG D L+ P +A+ R ++++ RWAM
Sbjct: 25 YYGPNRPLWKGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYARLRTQELMNGRWAM 84
Query: 89 LGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVI 130
LG+ C F GAQIFS+ G+DYL P I+A S+ AV +Q +
Sbjct: 85 LGITGCLTPELINSNSTPGFEPVWFNTGAQIFSDAGIDYLGVPGFINAHSLFAVIVVQAL 144
Query: 131 LMG 133
LMG
Sbjct: 145 LMG 147
>gi|357496383|ref|XP_003618480.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355493495|gb|AES74698.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 180
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 44/53 (83%)
Query: 100 QIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
QIFS+GGLDYL NPSL+HAQSILA+W + ILMGAV GY A GPLGEV DPL
Sbjct: 51 QIFSDGGLDYLGNPSLVHAQSILAIWVVLAILMGAVEGYRIADGPLGEVVDPL 103
>gi|192764699|gb|ACF05893.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764701|gb|ACF05894.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764703|gb|ACF05895.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764707|gb|ACF05897.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764709|gb|ACF05898.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764711|gb|ACF05899.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764713|gb|ACF05900.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764715|gb|ACF05901.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764717|gb|ACF05902.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764719|gb|ACF05903.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764721|gb|ACF05904.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764723|gb|ACF05905.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764727|gb|ACF05907.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764729|gb|ACF05908.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764731|gb|ACF05909.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764733|gb|ACF05910.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764735|gb|ACF05911.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764737|gb|ACF05912.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764739|gb|ACF05913.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764741|gb|ACF05914.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764743|gb|ACF05915.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764745|gb|ACF05916.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 111
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 55/90 (61%), Gaps = 20/90 (22%)
Query: 81 VIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSI 121
VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+L+HAQSI
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 60
Query: 122 LAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
LAV QV+LMG V G+ G P +GE D
Sbjct: 61 LAVLGFQVVLMGLVEGFRINGLPGVGEGND 90
>gi|305377032|dbj|BAJ15879.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 129
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 43/48 (89%)
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 5 GGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPL 52
>gi|305377030|dbj|BAJ15878.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 125
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/48 (87%), Positives = 43/48 (89%)
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
GGLDYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDPL
Sbjct: 1 GGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPL 48
>gi|55668304|gb|AAV54188.1| chloroplast major light-harvesting complex II protein m9
[Haematococcus pluvialis]
Length = 152
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 51/73 (69%)
Query: 80 KVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYG 139
+++ A G FKAGAQIF +GGL+YL NPSLIHAQ+I+A A+QVILMG V GY
Sbjct: 4 ELLAANGVSFGEPVWFKAGAQIFQDGGLNYLGNPSLIHAQNIVATLAVQVILMGLVEGYR 63
Query: 140 TAGGPLGEVTDPL 152
GGP GE DPL
Sbjct: 64 MNGGPAGEGLDPL 76
>gi|192764705|gb|ACF05896.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764725|gb|ACF05906.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 111
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 54/90 (60%), Gaps = 20/90 (22%)
Query: 81 VIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSI 121
VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+L+HAQSI
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 60
Query: 122 LAVWAIQVILMGAVGGYGTAGGP-LGEVTD 150
LAV QV+LMG V G G P +GE D
Sbjct: 61 LAVLGFQVVLMGLVEGSRINGLPGVGEGND 90
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 18/103 (17%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC------------ 94
AP +LTGE+PGD G+D L+ DPE FAKNR+ +V H RWAMLG++ C
Sbjct: 369 APAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLVGCLVPEVFGNLGIA 428
Query: 95 -----FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILM 132
++AGA + + G LDYL NP+L+HA ++ ++ ++L
Sbjct: 429 QLPAWYEAGA-VANTGSLDYLGNPNLVHASNVPLIFFTTLLLF 470
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 16/105 (15%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKA--------- 97
AP +LTGE+PGD G+D L+ DP FAK R+ +V H RWAMLG++ C
Sbjct: 160 APTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPEVFGNLGIA 219
Query: 98 -------GAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAV 135
A + + LDYL NP+L+HA ++ + ++LMG V
Sbjct: 220 QLPAWYDAATVANTSNLDYLGNPNLVHASNVSFIALSTLLLMGPV 264
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 83/182 (45%), Gaps = 49/182 (26%)
Query: 16 RKTAGKPKP--VSSGS--------QWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWD 62
+K A KPKP VSS S +WYGPDR YL D L P YLTGE PGDYG+D
Sbjct: 40 KKPAQKPKPAAVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYD 99
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVL------CC-------------FKAGAQIFS 103
L PE FAK + ++IHARWAMLG C FK GA +
Sbjct: 100 PFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLD 159
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGG--------------PLGEVT 149
L+Y N I ++AV A +VIL+G Y G PLG +
Sbjct: 160 GNTLNYFGNS--IPINLVVAVIA-EVILVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAS 216
Query: 150 DP 151
DP
Sbjct: 217 DP 218
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 83/182 (45%), Gaps = 49/182 (26%)
Query: 16 RKTAGKPKP--VSSGS--------QWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWD 62
+K A KPKP VSS S +WYGPDR YL D L P YLTGE PGDYG+D
Sbjct: 40 KKPAQKPKPAAVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYD 99
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVL------CC-------------FKAGAQIFS 103
L PE FAK + ++IHARWAMLG C FK GA +
Sbjct: 100 PFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLD 159
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGG--------------PLGEVT 149
L+Y N I ++AV A +V+L+G Y G PLG +
Sbjct: 160 GNTLNYFGNS--IPINLVVAVIA-EVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAS 216
Query: 150 DP 151
DP
Sbjct: 217 DP 218
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 81/182 (44%), Gaps = 49/182 (26%)
Query: 16 RKTAGKPKPVSSGS----------QWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWD 62
+K A KPKPV S +WYGPDR YL D L P YLTGE PGDYG+D
Sbjct: 39 KKPAQKPKPVPVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYD 98
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVL------CC-------------FKAGAQIFS 103
L PE FAK + ++IHARWAMLG C FK GA +
Sbjct: 99 PFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLD 158
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGG--------------PLGEVT 149
L+Y N I ++AV A +V+L+G Y G PLG +
Sbjct: 159 GNTLNYFGNS--IPINLVVAVIA-EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAS 215
Query: 150 DP 151
DP
Sbjct: 216 DP 217
>gi|356532722|ref|XP_003534920.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 125
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/45 (84%), Positives = 40/45 (88%)
Query: 108 DYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
DYL NPSLIHAQSILA+WA QVILMGAV GY AGGPLGEVTDP+
Sbjct: 4 DYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI 48
>gi|169197|gb|AAA33702.1| Major Cab protein [Petunia x hybrida]
Length = 125
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 41/48 (85%)
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
G LDYL NPSL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 1 GELDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPL 48
>gi|209778965|gb|ACI87793.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 106
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 62/103 (60%), Gaps = 20/103 (19%)
Query: 66 LSADPEIFAKNRELKVIHARWAMLGVLCCF----------KAGAQI------FSEGGLDY 109
LSADPE FA +REL+ IH+R AM+G L C + G + FSEGGLDY
Sbjct: 3 LSADPETFAMHRELE-IHSRRAMMGALGCVIPELLAIDGVRCGEAVWCKAAQFSEGGLDY 61
Query: 110 LENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
L +IHAQSILA+WA QV+L + GY GG LGE DPL
Sbjct: 62 LRY-VMIHAQSILAIWAFQVVL--RLIGYRVGGGRLGEGLDPL 101
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 82/182 (45%), Gaps = 49/182 (26%)
Query: 16 RKTAGKPKP--VSSGS--------QWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWD 62
+K A KPKP VSS S +WYGPDR YL D L P YLTGE PGDYG+D
Sbjct: 40 KKPAQKPKPSAVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYD 99
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVL------CC-------------FKAGAQIFS 103
L PE FAK + ++IHARWAMLG C FK GA +
Sbjct: 100 PFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLD 159
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGG--------------PLGEVT 149
L Y N I ++AV A +V+L+G Y G PLG +
Sbjct: 160 GNTLSYFGNS--IPINLVVAVIA-EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAS 216
Query: 150 DP 151
DP
Sbjct: 217 DP 218
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 72/142 (50%), Gaps = 24/142 (16%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
+WYGPDRV +L P YL GE GDYG+D L D E AK RE +++HAR
Sbjct: 47 DKWYGPDRVLFLPSGLYDRSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHAR 106
Query: 86 WAML---GVLCC---------------FKAGAQIFSEGGLDYLENPSLIHAQ--SILAVW 125
WAML G+L F+ GA++ + G L+Y P I + + AV
Sbjct: 107 WAMLAAAGILIPEGLQANGANIKGGVWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVI 166
Query: 126 AIQVILMGAVGGYGTAG-GPLG 146
AI+V LMGAV Y G GP G
Sbjct: 167 AIEVGLMGAVEFYRRNGTGPAG 188
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 72/142 (50%), Gaps = 24/142 (16%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
+WYGPDR +L P YL GE GDYG+D L DPE AK RE +++HAR
Sbjct: 50 DKWYGPDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHAR 109
Query: 86 WAML---GVLCC---------------FKAGAQIFSEGGLDYLENPSLIHAQ--SILAVW 125
WAML G+L F+ GA++ + G L+Y P I + + AV
Sbjct: 110 WAMLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVI 169
Query: 126 AIQVILMGAVGGYGTAG-GPLG 146
A++V LMGAV Y G GP G
Sbjct: 170 AVEVGLMGAVEFYRRNGTGPAG 191
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 72/142 (50%), Gaps = 24/142 (16%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
+WYGPDR +L P YL GE GDYG+D L DPE AK RE +++HAR
Sbjct: 20 DKWYGPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHAR 79
Query: 86 WAML---GVLCC---------------FKAGAQIFSEGGLDYLENPSLIHAQ--SILAVW 125
WAML G+L F+ GA++ + G L+Y P I + + AV
Sbjct: 80 WAMLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVI 139
Query: 126 AIQVILMGAVGGYGTAG-GPLG 146
A++V LMGAV Y G GP G
Sbjct: 140 AVEVGLMGAVEFYRRNGSGPAG 161
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 72/159 (45%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YLTGE PGDYG+D LS PE FAK + ++IHAR
Sbjct: 67 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHAR 126
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + G L+Y P I ILAV A
Sbjct: 127 WAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLILAVVA 184
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+++L+G Y G PLG DP
Sbjct: 185 -EIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDP 222
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 72/159 (45%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YLTGE PGDYG+D LS PE FAK + ++IHAR
Sbjct: 67 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHAR 126
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + G L+Y P I ILAV A
Sbjct: 127 WAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINFILAVVA 184
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+++L+G Y G PLG DP
Sbjct: 185 -EIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDP 222
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 75/164 (45%), Gaps = 37/164 (22%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
S WYG +R ++L PL P YLTGE PGDYG+D A LS DP F K +++HARWAM
Sbjct: 111 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 170
Query: 89 LGVLCCFKA------GAQIFSE-------------GGLDYLENPSLIHA--QSILAVWAI 127
L L GA F+E LDYL P L A Q ++ +
Sbjct: 171 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 230
Query: 128 QVILM--------------GAVGGY--GTAGGPLGEVTDPLSLS 155
Q ILM +G Y G P G + DPL+LS
Sbjct: 231 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLS 274
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 75/164 (45%), Gaps = 37/164 (22%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
S WYG +R ++L PL P YLTGE PGDYG+D A LS DP F K +++HARWAM
Sbjct: 111 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 170
Query: 89 LGVLCCFKA------GAQIFSE-------------GGLDYLENPSLIHA--QSILAVWAI 127
L L GA F+E LDYL P L A Q ++ +
Sbjct: 171 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 230
Query: 128 QVILM--------------GAVGGY--GTAGGPLGEVTDPLSLS 155
Q ILM +G Y G P G + DPL+LS
Sbjct: 231 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLS 274
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 67/141 (47%), Gaps = 24/141 (17%)
Query: 30 QWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
+WYGP RV +L P YLTG+ GDYG+D L DPE K R ++IHARW
Sbjct: 63 KWYGPSRVLFLPSGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRAFELIHARW 122
Query: 87 AMLGVLCC------------------FKAGAQIFSEGGLDYLENPSLIHAQ--SILAVWA 126
AML F+ GA++ + G L+Y P I + + A+ A
Sbjct: 123 AMLAAAGMIIPEGLAANGADIKGATWFETGAEMLNGGTLNYFAVPWAIVSNPLPLFAIVA 182
Query: 127 IQVILMGAVGGYGTAG-GPLG 146
++V LMGA Y G GP G
Sbjct: 183 VEVGLMGAAENYRRTGTGPKG 203
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 73/159 (45%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YLTGE PGDYG+D + LS PE F+K + ++IHAR
Sbjct: 69 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHAR 128
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + G L+Y P I I+AV A
Sbjct: 129 WAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLIVAVIA 186
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+++L+G Y G PLG DP
Sbjct: 187 -EIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDP 224
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 72/159 (45%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YLTGE PGDYG+D LS PE FAK + ++IHAR
Sbjct: 68 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHAR 127
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + G L+Y P I I+AV A
Sbjct: 128 WAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLIVAVVA 185
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+++L+G Y G PLG DP
Sbjct: 186 -EIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDP 223
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 72/159 (45%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YLTGE PGDYG+D LS PE FAK + ++IHAR
Sbjct: 71 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHAR 130
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + G L+Y P I I+AV A
Sbjct: 131 WAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLIVAVIA 188
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+++L+G Y G PLG DP
Sbjct: 189 -EIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDP 226
>gi|224034685|gb|ACN36418.1| unknown [Zea mays]
Length = 186
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 57/104 (54%), Gaps = 19/104 (18%)
Query: 16 RKTAGKPKP--VSSGS--------QWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWD 62
+K A KPKP VSS S +WYGPDR YL D L P YLTGE PGDYG+D
Sbjct: 40 KKPAQKPKPSAVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYD 99
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVL------CCFKAGAQ 100
L PE FAK + ++IHARWAMLG C K GA
Sbjct: 100 PFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGAN 143
>gi|914283|gb|AAB34067.1| light-harvesting complex b type 2, Lhcb2 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 130 aa]
Length = 130
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 44/54 (81%), Gaps = 1/54 (1%)
Query: 99 AQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
+QIFSEGGLDYL NP+L+HAQSILA+WA QV+LMG V GY AG P G + DPL
Sbjct: 1 SQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRIAGDPSGGL-DPL 53
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 73/164 (44%), Gaps = 37/164 (22%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
S WYG +R ++L P+S P YL+GE PGDYG+D A L+ DP F + +++HARWAM
Sbjct: 114 SFWYGEERPRWLGPISYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAM 173
Query: 89 LGVLCCF-------------------KAGAQIFSEGGLDYLENPSLIHA--QSILAVWAI 127
L L + G LDYL P L A Q +L +
Sbjct: 174 LAALGALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIAFC 233
Query: 128 QVILM--------------GAVGGY--GTAGGPLGEVTDPLSLS 155
Q ILM +G Y G P G + DPL+LS
Sbjct: 234 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGILFDPLNLS 277
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 64/128 (50%), Gaps = 24/128 (18%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YLTGE PGDYG+D LS PE FAK + ++IHAR
Sbjct: 72 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHAR 131
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + G L+Y N I ++AV A
Sbjct: 132 WAMLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNS--IPINLVVAVIA 189
Query: 127 IQVILMGA 134
V+L GA
Sbjct: 190 EVVLLGGA 197
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 72/159 (45%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YLTGE PGDYG+D LS PE F+K + ++IHAR
Sbjct: 69 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHAR 128
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + G L+Y P I I+AV A
Sbjct: 129 WAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLIVAVIA 186
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+++L+G Y G PLG DP
Sbjct: 187 -EIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDP 224
>gi|240064638|gb|ACS44644.1| putative chlorophyll a/b binding protein [Lemna minor]
Length = 49
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/39 (84%), Positives = 35/39 (89%)
Query: 56 PGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
PGDYGWDTA LSADPE FAKNREL+VIH+RWAMLG L C
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC 39
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 14 TMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIF 73
T + AGK + S WYG DR ++L P+S P YLTGE PGDYG+D A L DP
Sbjct: 91 TFKALAGKAR---KESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVAL 147
Query: 74 AKNRELKVIHARWAMLG 90
K +++HARWAML
Sbjct: 148 QKYFNFEILHARWAMLA 164
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 47/71 (66%), Gaps = 10/71 (14%)
Query: 95 FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG----------GP 144
FKAG+QIFSEGGLDYL NP+L+HAQSILAV QVILMG V G+ G P
Sbjct: 27 FKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNDLYP 86
Query: 145 LGEVTDPLSLS 155
G+ DPL L+
Sbjct: 87 GGQYFDPLGLA 97
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 78/176 (44%), Gaps = 37/176 (21%)
Query: 17 KTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKN 76
+ K + + S+WYG +R ++ P+ P YLTGE PGDYG+D A L D F K
Sbjct: 95 RFKAKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKY 154
Query: 77 RELKVIHARWAMLGVLCCF------KAGAQIFSE-------------GGLDYLENPSLIH 117
+++HARWAML L GA F+E LDYL P L
Sbjct: 155 FNFEILHARWAMLAALGALIPEVLDLTGAFHFAEPVWWRVGYSKLQGETLDYLGIPGLHV 214
Query: 118 A--QSILAVWAIQVILM--------------GAVGGY--GTAGGPLGEVTDPLSLS 155
A Q ++ + QV+LM +G Y G P G + DPL+LS
Sbjct: 215 AGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLS 270
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 42/64 (65%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
S W+G R +L PLS P +L+GE PGDYGWD A L DP + EL+++HARWAM
Sbjct: 121 SPWFGAARPLWLGPLSTQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWAM 180
Query: 89 LGVL 92
LG L
Sbjct: 181 LGAL 184
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 27 SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
S W+G DR K+L P+ P +L G FPGDYG+D A L DP F K +++HARW
Sbjct: 95 DASVWFGQDRPKWLGPIPYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARW 154
Query: 87 AMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSL--IHAQSILAVW 125
AML L ++ G LDYL P L + AQ IL +
Sbjct: 155 AMLAALGVVIPEVLEKFFGVKFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGILVIA 214
Query: 126 AIQVILM 132
Q +LM
Sbjct: 215 ICQFLLM 221
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 69/159 (43%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YL GE PGDYG+D LS PE F K + ++IHAR
Sbjct: 83 AKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHAR 142
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + G L Y + IH I AV A
Sbjct: 143 WAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFG--ASIHINLIAAVVA 200
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+VIL+G Y G PLG DP
Sbjct: 201 -EVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDP 238
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 59/128 (46%), Gaps = 21/128 (16%)
Query: 26 SSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
+ S WYG DR ++L P+ P YLTGE+PGDYG+D A L DP FA +++H R
Sbjct: 90 RNNSFWYGGDRPRWLGPVPYDYPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCR 149
Query: 86 WAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHA--QSILAV 124
WAML L +K G LDYL P A Q ++ +
Sbjct: 150 WAMLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVI 209
Query: 125 WAIQVILM 132
Q +LM
Sbjct: 210 AICQALLM 217
>gi|297740653|emb|CBI30835.3| unnamed protein product [Vitis vinifera]
Length = 148
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 48/99 (48%), Gaps = 42/99 (42%)
Query: 70 PEIFAKNRELKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLE 111
P FAKNREL+VIH RWAMLG L C FKAGAQIFSE
Sbjct: 22 PNTFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSE------- 74
Query: 112 NPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTD 150
VILMGAV GY AGGPLGEV +
Sbjct: 75 -----------------VILMGAVEGYRIAGGPLGEVKE 96
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 66/137 (48%), Gaps = 25/137 (18%)
Query: 29 SQWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L D L P YL GE PGDYG+D LS PE F K + ++IHAR
Sbjct: 68 AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHAR 127
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + L+Y N I I+AV A
Sbjct: 128 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLIVAVIA 185
Query: 127 IQVILMGAVGGYGTAGG 143
+V+L+G Y G
Sbjct: 186 -EVVLVGGAEYYRIING 201
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 27 SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
S W+G DR K+L P+ P +L G FPGDYG+D A L DP F K +++HARW
Sbjct: 95 DASVWFGQDRPKWLGPIPYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARW 154
Query: 87 AMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSL--IHAQSILAVW 125
AML L ++ G LDYL P L + AQ I+ +
Sbjct: 155 AMLAALGVVIPEVLEKFFGVNFAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVIA 214
Query: 126 AIQVILM 132
Q +LM
Sbjct: 215 ICQFLLM 221
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 60/129 (46%), Gaps = 21/129 (16%)
Query: 25 VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
V S WY R K+L P+ P +L GE PGDYG+D LS DP F + +++HA
Sbjct: 120 VRDESMWYREGRPKWLGPIPYDYPDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHA 179
Query: 85 RWAMLGVLCCF------KAGAQIFSE-------------GGLDYLENPSL--IHAQSILA 123
RWAML L + G FSE LDYL P L AQ IL
Sbjct: 180 RWAMLAALGVVIPELLDRFGGVQFSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILV 239
Query: 124 VWAIQVILM 132
+ QVILM
Sbjct: 240 IAFCQVILM 248
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 57/106 (53%), Gaps = 23/106 (21%)
Query: 16 RKTAGKPKPV---SSGS-------QWYGPDRVKYLDPLSG-----GAPFYLTGEFPGDYG 60
+K A K KP SSGS +WYGPDR +L L G P YL GE PGDYG
Sbjct: 40 KKPAQKAKPATASSSGSDIGDELAKWYGPDRRIFL--LEGLLDRSEVPEYLNGEVPGDYG 97
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVL------CCFKAGAQ 100
+D LS +P+ FA+ + ++IHARWAMLG C K GA
Sbjct: 98 YDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGAN 143
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 75/176 (42%), Gaps = 37/176 (21%)
Query: 17 KTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKN 76
+ K + + S+WYG +R ++ P+ P YLTGE PGDYG+D A L D F K
Sbjct: 92 RFKSKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKY 151
Query: 77 RELKVIHARWAMLGVLCCF-------------------KAGAQIFSEGGLDYLENPSLIH 117
+++HARWAML L + G L+YL P L
Sbjct: 152 FNFEILHARWAMLAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHV 211
Query: 118 A--QSILAVWAIQVILM--------------GAVGGY--GTAGGPLGEVTDPLSLS 155
A Q ++ + QV+LM +G Y G P G + DPL+LS
Sbjct: 212 AGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLS 267
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 69/159 (43%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YLTGE PGDYG+D LS PE FAK + ++IHAR
Sbjct: 70 AKWYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHAR 129
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + L+Y I I AV A
Sbjct: 130 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLIFAVVA 187
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+V+L+G Y G PLG DP
Sbjct: 188 -EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLANDP 225
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 54/104 (51%), Gaps = 19/104 (18%)
Query: 16 RKTAGKPKPVSSGS----------QWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWD 62
+K A K KP ++ S +WYGPDR +L P YL GE PGDYG+D
Sbjct: 40 KKPAQKAKPATASSSGSDIGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYD 99
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVL------CCFKAGAQ 100
LS +P+ FA+ + ++IHARWAMLG C K GA
Sbjct: 100 PFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNKFGAN 143
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%)
Query: 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
+ + S WYG +R ++L P+ P +LTGE+PGDYG+D A L DP FA +++
Sbjct: 93 RQARTASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEIL 152
Query: 83 HARWAMLGVL 92
H RWAML L
Sbjct: 153 HCRWAMLAAL 162
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%)
Query: 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
+ + S WYG +R ++L P+ P +LTGE+PGDYG+D A L DP FA +++
Sbjct: 93 RQARTASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEIL 152
Query: 83 HARWAMLGVL 92
H RWAML L
Sbjct: 153 HCRWAMLAAL 162
>gi|115776|sp|P14584.1|CB21_RAPSA RecName: Full=Chlorophyll a-b binding of LHCII type 1 protein;
AltName: Full=Chlorophyll a-b binding of LHCII type I
protein; Short=CAB; Short=LHCP
gi|21100|emb|CAA34640.1| chlorophyll a/b binding protein (124 AA) [Raphanus sativus]
Length = 124
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 107 LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG-GPLGEVTDPL 152
LDYL NPSL+HAQSILA+WA QVILMGAV GY AG GPLGE D L
Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLL 47
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 27 SGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
+ S WYG DR ++L P+ P +LTGE+PGDYG+D A L DP FA +++H RW
Sbjct: 90 NNSFWYGGDRPRWLGPVPYDYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRW 149
Query: 87 AMLGVL 92
AML L
Sbjct: 150 AMLAAL 155
>gi|414870050|tpg|DAA48607.1| TPA: hypothetical protein ZEAMMB73_891704 [Zea mays]
Length = 250
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 37/48 (77%)
Query: 95 FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG 142
FKAGAQIFSEGGLDYL NP+L+HA SIL V QV+LMG V G+ G
Sbjct: 34 FKAGAQIFSEGGLDYLGNPNLVHAHSILTVLGSQVVLMGLVEGFRVNG 81
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 64/127 (50%), Gaps = 25/127 (19%)
Query: 29 SQWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L D L P YLTGE PGDYG+D LS P+ F K + ++IHAR
Sbjct: 70 AKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHAR 129
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + L+Y I +LAV A
Sbjct: 130 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA 187
Query: 127 IQVILMG 133
+VIL+G
Sbjct: 188 -EVILVG 193
>gi|305855829|gb|ADM67755.1| putative Lhcb3 [Pieris japonica var. taiwanensis]
gi|305855831|gb|ADM67756.1| putative Lhcb3 [Rhododendron ovatum]
gi|305855833|gb|ADM67757.1| putative Lhcb3 [Rhododendron ellipticum]
gi|305855835|gb|ADM67758.1| putative Lhcb3 [Rhododendron mariesii]
gi|305855837|gb|ADM67759.1| putative Lhcb3 [Rhododendron nakaharae]
gi|305855839|gb|ADM67760.1| putative Lhcb3 [Rhododendron noriakianum]
gi|305855841|gb|ADM67761.1| putative Lhcb3 [Rhododendron kanehirai]
gi|305855843|gb|ADM67762.1| putative Lhcb3 [Rhododendron simsii]
gi|305855845|gb|ADM67763.1| putative Lhcb3 [Rhododendron oldhamii]
gi|305855849|gb|ADM67765.1| putative Lhcb3 [Rhododendron breviperulatum]
gi|305855853|gb|ADM67767.1| putative Lhcb3 [Rhododendron formosanum]
gi|338807936|gb|AEJ07692.1| putative Lhcb3 [Rhododendron simsii]
gi|338807940|gb|AEJ07694.1| putative Lhcb3 [Rhododendron seniavinii]
gi|338807944|gb|AEJ07696.1| putative Lhcb3 [Rhododendron simsii]
gi|338807946|gb|AEJ07697.1| putative Lhcb3 [Rhododendron scabrum]
Length = 66
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 40/63 (63%), Gaps = 19/63 (30%)
Query: 81 VIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSI 121
VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+L+HAQSI
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 60
Query: 122 LAV 124
LAV
Sbjct: 61 LAV 63
>gi|305855847|gb|ADM67764.1| putative Lhcb3 [Rhododendron rubropilosum]
gi|305855851|gb|ADM67766.1| putative Lhcb3 [Rhododendron kawakamii]
gi|305855855|gb|ADM67768.1| putative Lhcb3 [Rhododendron hyperythrum]
gi|305855857|gb|ADM67769.1| putative Lhcb3 [Rhododendron rubropunctatum]
gi|305855859|gb|ADM67770.1| putative Lhcb3 [Rhododendron morii]
gi|305855861|gb|ADM67771.1| putative Lhcb3 [Rhododendron pseudochrysanthum]
gi|338807938|gb|AEJ07693.1| putative Lhcb3 [Rhododendron chihsinianum]
gi|338807942|gb|AEJ07695.1| putative Lhcb3 [Rhododendron wiltonii]
Length = 66
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 40/63 (63%), Gaps = 19/63 (30%)
Query: 81 VIHARWAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSI 121
VIH RWAMLG L C FKAGAQIFSEGGLDYL NP+L+HAQSI
Sbjct: 1 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSI 60
Query: 122 LAV 124
LAV
Sbjct: 61 LAV 63
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 71/159 (44%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L D L P YLTGE PGDYG+D LS P+ F K + ++IHAR
Sbjct: 70 AKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHAR 129
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + L+Y I +LAV A
Sbjct: 130 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA 187
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+VIL+G + G PLG DP
Sbjct: 188 -EVILVGGAEYFRITNGLGFDDKLHPGGPFDPLGLAKDP 225
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 71/159 (44%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L D L P YL GE PGDYG+D L PE FAK + ++IHAR
Sbjct: 59 AKWYGPDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHAR 118
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + L+Y I ++AV A
Sbjct: 119 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVVAVIA 176
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+V+L+G Y G PLG +DP
Sbjct: 177 -EVVLLGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDP 214
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR YL P YLTGE PGDYG+D LS PE F + + ++IHAR
Sbjct: 46 AKWYGPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHAR 105
Query: 86 WAMLG 90
WAMLG
Sbjct: 106 WAMLG 110
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 67/159 (42%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YL GE PGDYG+D LS PE F K + ++IHAR
Sbjct: 83 AKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHAR 142
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + G L Y I+ ++A
Sbjct: 143 WAMLGAAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVV 199
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+VIL+G Y G PLG DP
Sbjct: 200 AEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDP 238
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 29 SQWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L D L P YL GE PGDYG+D LS PE FAK + ++IHAR
Sbjct: 65 AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHAR 124
Query: 86 WAMLG 90
WAMLG
Sbjct: 125 WAMLG 129
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 67/159 (42%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YL GE PGDYG+D LS PE F K + ++IHAR
Sbjct: 83 AKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHAR 142
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + G L Y I+ ++A
Sbjct: 143 WAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVV 199
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+VIL+G Y G PLG DP
Sbjct: 200 AEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDP 238
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 56/123 (45%), Gaps = 21/123 (17%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYG R ++L PL P +L GEFPGDYG+D A L DP FA +++H RWAML
Sbjct: 90 WYGGARPRWLGPLRYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLA 149
Query: 91 VLCC-------------------FKAGAQIFSEGGLDYLENPSLIHA--QSILAVWAIQV 129
L +K G LDYL P A Q I+ + QV
Sbjct: 150 ALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIVIAICQV 209
Query: 130 ILM 132
+LM
Sbjct: 210 LLM 212
>gi|159138449|gb|ABW89227.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/39 (84%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SLIHAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 1 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 39
>gi|159138421|gb|ABW89213.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138423|gb|ABW89214.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138425|gb|ABW89215.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138429|gb|ABW89217.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138433|gb|ABW89219.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138437|gb|ABW89221.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138439|gb|ABW89222.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138441|gb|ABW89223.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138443|gb|ABW89224.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138445|gb|ABW89225.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138447|gb|ABW89226.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138451|gb|ABW89228.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138453|gb|ABW89229.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138455|gb|ABW89230.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138457|gb|ABW89231.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/39 (84%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SLIHAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 1 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 39
>gi|159138427|gb|ABW89216.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138431|gb|ABW89218.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138435|gb|ABW89220.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/39 (84%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SLIHAQSILA+WA QVILMGAV GY AGGPLGEV DPL
Sbjct: 1 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPL 39
>gi|1064830|dbj|BAA11310.1| chlorophyl a/b binding protein [Ipomoea nil]
Length = 68
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 34/48 (70%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAP 48
S + EI G TMRKTAGKPKPVSSGS WYGPDRVKYL P AP
Sbjct: 21 SPSTPEITGNVNFTMRKTAGKPKPVSSGSPWYGPDRVKYLGPFFRAAP 68
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
T+ P ++WYGPDR +L P YL GE PGDYG+D LS PE F+
Sbjct: 52 TSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDFS 111
Query: 75 KNRELKVIHARWAMLGVL------CCFKAGAQ 100
K + ++IHARWAMLG C K GA
Sbjct: 112 KYQAYELIHARWAMLGAAGFIIPEACNKFGAN 143
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 66/159 (41%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YL GE PGDYG+D LS PE F K + ++IHAR
Sbjct: 58 AKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHAR 117
Query: 86 WAMLGV-------------------LCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG FK GA + G L Y I+ ++A
Sbjct: 118 WAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVV 174
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+VIL+G Y G PLG DP
Sbjct: 175 AEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDP 213
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Query: 29 SQWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L D L P YL GE GDYG+D L PE FAK + ++IHAR
Sbjct: 63 AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHAR 122
Query: 86 WAMLGVLCC-------------------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + L Y I +LAV
Sbjct: 123 WAMLGAAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFGKN--IPINLVLAVVG 180
Query: 127 IQVILMGAVGGYGTAGG 143
+V+L+G Y G
Sbjct: 181 -EVVLLGGAEYYRITNG 196
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR YL P YLTGE PGDYG+D LS PE F + + ++IHAR
Sbjct: 4 AKWYGPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHAR 63
Query: 86 WAMLG 90
WAMLG
Sbjct: 64 WAMLG 68
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YL GE PGDYG+D LS PE FAK + ++IHAR
Sbjct: 67 AKWYGPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHAR 126
Query: 86 WAMLG 90
WAMLG
Sbjct: 127 WAMLG 131
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
T+ P ++WYGPDR +L P YL GE PGDYG+D LS PE F+
Sbjct: 52 TSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFS 111
Query: 75 KNRELKVIHARWAMLGVL------CCFKAGAQ 100
K + ++IHARWAMLG C K GA
Sbjct: 112 KYQAYELIHARWAMLGAAGFIIPEACNKFGAN 143
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR YL P YL GE PGDYG+D L PE FAK + ++IHAR
Sbjct: 66 AKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHAR 125
Query: 86 WAMLG 90
WAMLG
Sbjct: 126 WAMLG 130
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 71/145 (48%), Gaps = 30/145 (20%)
Query: 29 SQWYGPDRVKYLDPLSGG------APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
+WYGP+R +L GG P YL GE GDYG+D L D E K R +++
Sbjct: 44 EKWYGPERKLFL---PGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELL 100
Query: 83 HARWAML---GVLCC---------------FKAGAQIFSEGGLDYLENP--SLIHAQSIL 122
HARWAML G+L F+ GA++ + G L+Y P + + +
Sbjct: 101 HARWAMLAAAGILIPEGLQANGADIKGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLA 160
Query: 123 AVWAIQVILMGAVGGYGTAG-GPLG 146
AV I+++L+GAV + G GP G
Sbjct: 161 AVTLIEIVLLGAVEKFRVDGTGPAG 185
>gi|62733871|gb|AAX95980.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864187|gb|ABA92339.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 245
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
T+ P ++WYGPDR +L P YL GE PGDYG+D LS PE F+
Sbjct: 52 TSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFS 111
Query: 75 KNRELKVIHARWAMLGVL------CCFKAGAQ 100
K + ++IHARWAMLG C K GA
Sbjct: 112 KYQAYELIHARWAMLGAAGFIIPEACNKFGAN 143
>gi|108864185|gb|ABG22425.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 186
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
T+ P ++WYGPDR +L P YL GE PGDYG+D LS PE F+
Sbjct: 52 TSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFS 111
Query: 75 KNRELKVIHARWAMLGVL------CCFKAGAQ 100
K + ++IHARWAMLG C K GA
Sbjct: 112 KYQAYELIHARWAMLGAAGFIIPEACNKFGAN 143
>gi|115821|sp|P14275.1|CB2C_SOLLC RecName: Full=Chlorophyll a-b binding protein 1C, chloroplastic;
AltName: Full=LHCII type I CAB-1C; Short=LHCP; Flags:
Precursor
Length = 265
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|115824|sp|P14277.1|CB2F_SOLLC RecName: Full=Chlorophyll a-b binding protein 3B, chloroplastic;
AltName: Full=LHCII type I CAB-3B; Short=LHCP; Flags:
Precursor
Length = 267
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 190
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQW 31
S ++SEI G G ITMRKTA KPKP SSGS W
Sbjct: 21 SPSSSEISGNGRITMRKTAAKPKPASSGSPW 51
>gi|82077|pir||F24039 chlorophyll a/b-binding protein 3B precursor - tomato (fragments)
gi|224931|prf||1204205F protein 3B,chlorophyll binding
Length = 167
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 52 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 90
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLD---------------PLSG 45
S ++SEI G G ITMRKTA KPKP SSGS W L ++G
Sbjct: 21 SPSSSEISGNGRITMRKTAAKPKPASSGSPWSLVHAQSILAIWACQVVLMGAVEGYRIAG 80
Query: 46 GA------PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGA 99
G P Y G F D L+ DPE FA+ + ++ + R AM + F A
Sbjct: 81 GPLGEVVDPLYPGGSF------DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF-VQA 133
Query: 100 QIFSEGGLDYLEN 112
+ +G L+ L +
Sbjct: 134 IVTGKGPLENLAD 146
>gi|115816|sp|P14274.1|CB2A_SOLLC RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type I CAB-1A; Short=LHCP; Flags:
Precursor
Length = 265
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 188
>gi|115823|sp|P14276.1|CB2E_SOLLC RecName: Full=Chlorophyll a-b binding protein 3A, chloroplastic;
AltName: Full=LHCII type I CAB-3A; Short=LHCP; Flags:
Precursor
Length = 267
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 190
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 23/29 (79%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQW 31
++SEI G G ITMRKTA KPKP SSGS W
Sbjct: 23 SSSEITGNGRITMRKTAAKPKPASSGSPW 51
>gi|82076|pir||E24039 chlorophyll a/b-binding protein 3A precursor - tomato (fragments)
gi|224930|prf||1204205E protein 3A,chlorophyll binding
Length = 167
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 52 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 90
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 58/131 (44%), Gaps = 28/131 (21%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLD---------------PLSGGA 47
++SEI G G ITMRKTA KPKP SSGS W L ++GG
Sbjct: 23 SSSEITGNGRITMRKTAAKPKPASSGSPWSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 82
Query: 48 ------PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQI 101
P Y G F D L+ DPE FA+ + ++ + R AM + F A +
Sbjct: 83 LGEVVDPLYPGGSF------DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF-VQAIV 135
Query: 102 FSEGGLDYLEN 112
+G L+ L +
Sbjct: 136 TGKGPLENLAD 146
>gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precursor - tomato (fragments)
gi|224926|prf||1204205A protein 1A,chlorophyll binding
Length = 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 50 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 88
>gi|224928|prf||1204205C protein 1C,chlorophyll binding
Length = 165
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 50 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 88
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YL GE PGDYG+D LS PE FAK + ++IHAR
Sbjct: 71 AKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHAR 130
Query: 86 WAMLGV 91
WAMLG
Sbjct: 131 WAMLGA 136
>gi|914284|gb|AAB34068.1| light-harvesting complex b type 3, Lhcb3 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 132 aa]
Length = 132
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 43/67 (64%), Gaps = 10/67 (14%)
Query: 99 AQIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG----------GPLGEV 148
AQIFSEGGLDYL NP+L+HAQSILAV QVILMG V G+ G P G+
Sbjct: 1 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLPGVGEGGDLYPGGQY 60
Query: 149 TDPLSLS 155
DPL L+
Sbjct: 61 FDPLGLA 67
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 29 SQWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L D L P YL GE PGDYG+D LS P+ F K + ++IHAR
Sbjct: 66 AKWYGPDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHAR 125
Query: 86 WAMLGVL------CCFKAGAQ 100
WAMLG C K GA
Sbjct: 126 WAMLGAAGFIIPEACNKFGAN 146
>gi|170409|gb|AAA34150.1| chlorophyll a/b-binding protein Cab-1A, partial [Solanum
lycopersicum]
gi|170414|gb|AAA34152.1| chlorophyll a/b-binding protein Cab-1C, partial [Solanum
lycopersicum]
Length = 116
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 39
>gi|115822|sp|P10707.1|CB2D_SOLLC RecName: Full=Chlorophyll a-b binding protein 1D; AltName:
Full=LHCII type I CAB-1D; Short=LHCP
gi|170428|gb|AAA34158.1| chlorophyll a/b-binding protein Cab-1D, partial [Solanum
lycopersicum]
gi|224929|prf||1204205D protein 1D,chlorophyll binding
Length = 116
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 39
>gi|170421|gb|AAA34155.1| chlorophyll a/b-binding protein Cab-3A, partial [Solanum
lycopersicum]
gi|170426|gb|AAA34157.1| chlorophyll a/b-binding protein Cab-3B, partial [Solanum
lycopersicum]
Length = 116
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 114 SLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152
SL+HAQSILA+WA QV+LMGAV GY AGGPLGEV DPL
Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPL 39
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
S WYG +R K+L PLS P YL G PGDY +D L+ D + F + E +++HARWAM
Sbjct: 66 SPWYGEERPKWLGPLSYDYPAYLRGGAPGDYAYDPLQLAQDQDKFDQYFEFELLHARWAM 125
Query: 89 LGVL 92
LG L
Sbjct: 126 LGAL 129
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YL GE PG+YG+D LS PE FAK + ++IHAR
Sbjct: 66 AKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHAR 125
Query: 86 WAMLG 90
WAMLG
Sbjct: 126 WAMLG 130
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 66/159 (41%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YL GE PGDYG+D L PE F K + ++IHAR
Sbjct: 83 AKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHAR 142
Query: 86 WAMLGV-------------LCC------FKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG C FK GA + G L Y I+ ++A
Sbjct: 143 WAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPIN---LIAAVV 199
Query: 127 IQVILMGAVGGYGTAGG--------------PLGEVTDP 151
+VIL+G Y G PLG DP
Sbjct: 200 AEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDP 238
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 67/144 (46%), Gaps = 28/144 (19%)
Query: 29 SQWYGPDRVKYL-----DPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIH 83
+WYGP R +L DP P YL G GDYG+D L D K R ++IH
Sbjct: 91 DKWYGPSRALFLPGGLLDPSD--VPTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIH 148
Query: 84 ARWAML---GVLCC---------------FKAGAQIFSEGGLDYLENP--SLIHAQSILA 123
ARWAML G++ F+ GA++ + G L+Y P + + +
Sbjct: 149 ARWAMLAAAGIIIPEGLQANGAAIKGGTWFETGAEMLNGGTLNYFAVPWGIINNPLPLFL 208
Query: 124 VWAIQVILMGAVGGYGTAG-GPLG 146
V I+V L+GAV Y +G GP G
Sbjct: 209 VVVIEVALLGAVERYRQSGEGPPG 232
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARW 86
S WYG +R ++L P+ P YLTGE PGDYG+D A L DP F K +++HARW
Sbjct: 107 SLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARW 164
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 37/164 (22%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWA- 87
S WYG +R ++L P+ P YLTGE PGDYG+D A LS D F + +++HARWA
Sbjct: 105 SLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARWAM 164
Query: 88 ----------MLGVLCCF--------KAGAQIFSEGGLDYLENPSLIHA--QSILAVWAI 127
+L + F + G LDYL P L A Q +L +
Sbjct: 165 LAALGALAPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLVIAIC 224
Query: 128 QVILM--------------GAVGGY--GTAGGPLGEVTDPLSLS 155
Q +LM +G Y G P G + DPL+LS
Sbjct: 225 QALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLNLS 268
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
W+G R ++L P+ P +L GEFPGDYG+D A L DP FA +++H RWAML
Sbjct: 98 WFGEARPRWLGPIPYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLA 157
Query: 91 VL 92
L
Sbjct: 158 AL 159
>gi|224284808|gb|ACN40134.1| unknown [Picea sitchensis]
Length = 208
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YL GE PGDYG+D LS PE F K + ++IHAR
Sbjct: 83 AKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHAR 142
Query: 86 WAMLGV 91
WAMLG
Sbjct: 143 WAMLGA 148
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 70/159 (44%), Gaps = 39/159 (24%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYG R YL P YLTGE PGDYG+D LS P F K + ++IHAR
Sbjct: 56 AKWYGESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHAR 115
Query: 86 WAMLGV-------------------LCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWA 126
WAMLG FK GA + G L+Y + I +LAV A
Sbjct: 116 WAMLGAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFG--ANIPINLVLAVLA 173
Query: 127 IQVILMGAVGGYGTA----------GGPLGEVTDPLSLS 155
+VIL+G Y + GGP DPL L+
Sbjct: 174 -EVILVGGAEYYRSINNLGLDRLHPGGPF----DPLGLA 207
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 29 SQWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L D L P YL GE GDYG+D L PE FAK + ++IHAR
Sbjct: 60 AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHAR 119
Query: 86 WAMLG 90
WAMLG
Sbjct: 120 WAMLG 124
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 29 SQWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L D L P YL GE GDYG+D L PE FAK + ++IHAR
Sbjct: 60 AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHAR 119
Query: 86 WAMLG 90
WAMLG
Sbjct: 120 WAMLG 124
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 29 SQWYGPDRVKYL-DPL--SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L D L P YL GE GDYG+D L PE FAK + ++IHAR
Sbjct: 60 AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHAR 119
Query: 86 WAMLG 90
WAMLG
Sbjct: 120 WAMLG 124
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
S+WYG R + PL G +L GE GD G+D L DP FA+ RE++++HARWAM
Sbjct: 53 SKWYGASRPRLPGPLGGAQ--HLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAM 110
Query: 89 LGVLCCF 95
LG + C
Sbjct: 111 LGFVGCM 117
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 29 SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
++WYGPDR +L P YL GE PGDYG+D L PE F K + ++IHAR
Sbjct: 82 AKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHAR 141
Query: 86 WAMLG 90
WAMLG
Sbjct: 142 WAMLG 146
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 18/149 (12%)
Query: 15 MRKTAGKPKPVSSGSQWYGPDRVKYLDP----LSGGAPFYLTGEFPGDYGWDTACLSADP 70
+RK++GK S+WYGP+R YL ++ P YL G GDYG+D L D
Sbjct: 68 VRKSSGKRGDGVDLSKWYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDPLQLGKDG 127
Query: 71 EIFAKNRELKVIHARWAML---GVLCCFKAGAQ--IFSEGGLDYLE----NPSLIHAQSI 121
++ + R +VIHARWAML G++ G +++E G +L+ P ++ +
Sbjct: 128 KV-EQYRAAEVIHARWAMLAIPGIVIPEALGIPGGVWTETGKVFLDGEAGRPEILQNPYL 186
Query: 122 LAVWAIQVILMGAVGGY--GTAGGPLGEV 148
A AIQ+ L AV GY G A P G V
Sbjct: 187 FA--AIQIGLFAAVEGYRAGKAPAPDGFV 213
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 10 KGCITMRKTAGKPKPVSSG------SQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYG 60
K +T++KT K PV + S+WYGP R YL + P YL G+ GDYG
Sbjct: 40 KAPVTVKKTVKKAAPVKTTVKTADLSKWYGPQRKLYLPSGLLTTADIPSYLDGKLAGDYG 99
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+D L AD I + R +VIHARWAML V
Sbjct: 100 FDPLGLGADGAI-KQYRVAEVIHARWAMLAV 129
>gi|145078792|tpg|DAA05884.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Euglena gracilis]
Length = 295
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P YLTGEFPGD G+D A LSADPE F + R ++IH R AML V+
Sbjct: 95 PAYLTGEFPGDRGFDPAGLSADPETFDRMRIAEIIHGRVAMLAVVGAL 142
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 65/149 (43%), Gaps = 38/149 (25%)
Query: 29 SQWYGPDRVKYL----------DPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRE 78
+WYGPDR +L +PL L G PGDYG+D L+ D E +K +
Sbjct: 46 DKWYGPDRALFLPGGLMARDEINPL-------LNGTLPGDYGYDPLGLAKDAETLSKYQA 98
Query: 79 LKVIHARWAMLGVLCC------------------FKAGAQIFSEGGLDYLENP--SLIHA 118
+++HARWAML F+ GA + + G L++ P ++ +
Sbjct: 99 NELLHARWAMLAAAGAIIPEGLAANGADVKGATWFETGAAMLNGGTLNWFAVPIANISNP 158
Query: 119 QSILAVWAIQVILMGAVGGYGTAG-GPLG 146
+ V A V LMGA Y G GP G
Sbjct: 159 LPLFVVVAANVALMGAAENYRRTGEGPAG 187
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 17 KTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKN 76
KT S+WYGP R + PL G+ +L G GD G+D LS + FAK
Sbjct: 163 KTRAAHAEARRQSKWYGPSRPRLPGPL--GSAEHLIGAIAGDAGFDPLGLSKEQASFAKY 220
Query: 77 RELKVIHARWAMLGVLCCF 95
+E +++HARWAMLGV+ C
Sbjct: 221 QEAELLHARWAMLGVVGCL 239
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 18 TAGKPKPVSSGSQWYGPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFA 74
T+ P ++WYGPDR +L P YL GE PGDYG+D LS PE F+
Sbjct: 52 TSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFS 111
Query: 75 KNRELKVIHARWAML 89
K + ++IHARW +L
Sbjct: 112 KYQAYELIHARWVVL 126
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 19/144 (13%)
Query: 10 KGCITMRKTAGKPKPVSSG-SQWYGPDRVKYL-----DPLSGGAPFYLTGEFPGDYGWDT 63
K ++K++GKP ++WYG +R YL DP + P Y+ G GDYG+D
Sbjct: 60 KKAAPVKKSSGKPSQAGGDLAKWYGKNRRFYLPSGLLDPATD-VPSYMDGTLAGDYGFDP 118
Query: 64 ACLSADPEIFAKNRELKVIHARWAML---GVLCCFKAG--AQIFSEGGLDYLE----NPS 114
L AD +I R +VIHARWAML G++ G +++E G +L+ P
Sbjct: 119 LKLGADGKI-NDYRAAEVIHARWAMLAIPGIVIPEALGIPGGVWTETGKVFLDGEAGRPE 177
Query: 115 LIHAQSILAVWAIQVILMGAVGGY 138
++ I A IQ+ L AV GY
Sbjct: 178 ILQNPIIFA--GIQIALFAAVEGY 199
>gi|157965821|gb|ABW06947.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 926
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
P +LTGEFPGD G+D LS DP++FA+ R +V H R AMLG++ C
Sbjct: 18 PAHLTGEFPGDRGFDPLGLSKDPKVFARMRISEVFHGRLAMLGIVGC 64
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
P YLTGEFP D G+D A L+ADP+++ + R +V + R AML ++ C
Sbjct: 573 PAYLTGEFPADRGFDPAGLAADPKVYERMRVAEVFNGRLAMLAIVGC 619
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 16/92 (17%)
Query: 2 LAASEIHGKGCITMRKTAGK-PKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
A+ + G G + M T+GK +P+ W+ G AP YLTG++ GD G
Sbjct: 173 FTANILTGGGSVAMFSTSGKVDRPL-----WFP----------GGYAPSYLTGQYFGDRG 217
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
+D A L+ADP++F + R +V H R AML ++
Sbjct: 218 FDPAGLAADPKVFERMRVSEVYHGRLAMLAIV 249
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
P +LTGE+P D G+D L+ADP ++A+ R +V HAR +ML ++
Sbjct: 390 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIV 434
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
P +LTGE+P D G+D L+ADP ++A+ R +V HAR +ML ++
Sbjct: 763 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIV 807
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 33 GPDRVKYLDP---LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAML 89
GPDR +L P YL GE PGDYG+D LS PE F+K + ++IHARWAML
Sbjct: 6 GPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAML 65
Query: 90 GVL------CCFKAGAQ 100
G C K GA
Sbjct: 66 GAAGFIIPEACNKFGAN 82
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus
tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus
tauri]
Length = 242
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
S +YG +RVK+L L P +L G GD G+D L+A E + REL+++H RWAM
Sbjct: 29 SAFYGANRVKFLGDLEYEYPAHLDGTLCGDVGFDPLNLAAKSEDLERYRELELLHGRWAM 88
Query: 89 LGVL 92
LGV+
Sbjct: 89 LGVV 92
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 67/136 (49%), Gaps = 22/136 (16%)
Query: 29 SQWYGPDRVKYLDPLSGGA------PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
++WYGP+R YL GG P YL G GDYG+D L AD ++ R +++
Sbjct: 91 AKWYGPNRKLYL---PGGLLTKADLPSYLDGTLAGDYGFDPLGLGADGKV-KDYRVAEIL 146
Query: 83 HARWAMLGVLCCFKAGAQ-----IFSEGGLDYLENPSLIHAQSILAVW----AIQVILMG 133
HARWAML V A +++E G +L+ + SIL W AIQV+LMG
Sbjct: 147 HARWAMLAVPGVVIPEALNIPGGVWTETGKVFLDGET--GRDSILEFWPIYAAIQVVLMG 204
Query: 134 AVGGYGTAG-GPLGEV 148
+ G GP G V
Sbjct: 205 GAEKFRQDGVGPAGFV 220
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 69/136 (50%), Gaps = 22/136 (16%)
Query: 29 SQWYGPDRVKYLDPLSGGA------PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
++WYGPDR YL GG P YL G GDYG+D L AD I + R +VI
Sbjct: 100 AKWYGPDRKLYL---PGGLLTKADLPSYLDGTLAGDYGFDPLGLGADGAI-KQYRVAEVI 155
Query: 83 HARWAML---GVLCCFKAGAQ--IFSEGGLDYLE----NPSLIHAQSILAVWAIQVILMG 133
HARWAML GV+ G +++E G +L+ P + + A A+QV LM
Sbjct: 156 HARWAMLAIPGVVIPEALGLPGGVWTETGKVFLDGETGRPFFLENPIVFA--AVQVALMA 213
Query: 134 AVGGYGTAG-GPLGEV 148
V + ++G GP G V
Sbjct: 214 GVEQFRSSGEGPAGFV 229
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 10 KGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSAD 69
+G T T G+ ++ P+ + + + P +LTGEFPGD G+D LS D
Sbjct: 129 RGVSTRGSTRGQSTRGQRSTRGSAPEEERLVWFPNATPPDHLTGEFPGDRGFDPLGLSKD 188
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
P +F + R +V H R AMLG++ C FS+G L + +L L + A+QV
Sbjct: 189 PVVFERMRISEVFHGRLAMLGIVGCI-VPELFFSQGPWFDLSSFNLTR----LGLVALQV 243
Query: 130 I 130
I
Sbjct: 244 I 244
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +LTGE+P D G+D L+ADP+++A+ R +V H R AML ++ C
Sbjct: 544 PAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCI 591
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +LTGE+P D G+D L+ADP+++A+ R +V H R AML ++ C
Sbjct: 918 PAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCI 965
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+ G G + M +G+ S + P+ + AP +LTGE+ GD G+D A L
Sbjct: 327 LTGGGSVAMFAGSGRKSQKSDERPLWFPNTL---------APSWLTGEYYGDRGFDPAGL 377
Query: 67 SADPEIFAKNRELKVIHARWAMLGVL 92
+ADP+ F + R +V H R AML ++
Sbjct: 378 AADPDTFERMRIAEVYHGRLAMLAIV 403
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P YLTGE GD G+D A L+ADP F + + +V H R +ML ++ C
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCL 775
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL------CCFKAGAQ 100
P YL GE PGDYG+D LS PE F+K + ++IHARWAMLG C K GA
Sbjct: 3 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGAN 61
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 16/98 (16%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P YL G P DYG+D L +P+ A+ +E ++IHARWAMLGV AGA+I + G+
Sbjct: 46 PSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIHARWAMLGVSGA--AGAEIIT--GI 101
Query: 108 DYLENPSLIHAQS----------ILAVWAIQVILMGAV 135
+++E P + +Q + A+ AI+V +M V
Sbjct: 102 NWVEAP--VQSQQTYLGNTIPFPLPAIAAIEVFVMAYV 137
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 10 KGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSAD 69
+G T T G+ ++ P+ + + + P +LTGEFPGD G+D LS D
Sbjct: 129 RGVSTRGSTRGQSTRGQRSTRGNAPEEERLVWFPNATPPDHLTGEFPGDRGFDPLGLSTD 188
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQV 129
P +F + R +V H R AMLG++ C FS+G L +L L + A+QV
Sbjct: 189 PVVFERMRISEVFHGRLAMLGIVGCI-VPELFFSQGPWFDLSGFNLTR----LGLVALQV 243
Query: 130 I 130
I
Sbjct: 244 I 244
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +LTGE+P D G+D L+ADP+++A+ R +V H R AML ++ C
Sbjct: 544 PAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCI 591
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +LTGE+P D G+D L+ADP+++A+ R +V H R AML ++ C
Sbjct: 918 PAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCI 965
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+ G G + M +G+ S + P+ + AP +L GE+ GD G+D A L
Sbjct: 327 LTGGGSVAMFAASGRKSQKSDERPLWFPNTL---------APSWLNGEYYGDRGFDPAGL 377
Query: 67 SADPEIFAKNRELKVIHARWAMLGVL 92
+ADP+ F + R +V H R AML V+
Sbjct: 378 AADPDTFERMRIAEVYHGRLAMLAVV 403
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P YLTGE GD G+D A L+ADP F + + +V H R +ML ++ C
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCL 775
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 47/106 (44%), Gaps = 21/106 (19%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF------------ 95
P +L GEFPGDYG+D A L DP FA +++H RWAMLG L
Sbjct: 3 PEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGIVH 62
Query: 96 -------KAGAQIFSEGGLDYLENPSLIHA--QSILAVWAIQVILM 132
K G LDYL P L A Q I+ + Q +LM
Sbjct: 63 FVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIAICQALLM 108
>gi|157965833|gb|ABW06953.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 424
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
AP +LTGEFPGD G+D +A+PE F + R +V H R AMLGV C
Sbjct: 262 APPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGC 309
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+ G + M T G+ +PV W+ P YLTGEFP D G+D L
Sbjct: 54 VFGASPVAMFTTTGEKRPV-----WFP----------GATPPAYLTGEFPADRGFDPLGL 98
Query: 67 SADPEIFAKNRELKVIHARWAMLGVL 92
+ DP + + R +V H+R AMLGV+
Sbjct: 99 AKDPATYERMRSSEVFHSRLAMLGVV 124
>gi|157965831|gb|ABW06952.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 786
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
AP +LTGEFPGD G+D +A+PE F + R +V H R AMLGV C
Sbjct: 262 APPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGC 309
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
AP +LTGEFPGD G+D +A+PE F + R +V H R AMLGV C
Sbjct: 624 APPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGC 671
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+ G + M T G+ +PV W+ P YLTGEFP D G+D L
Sbjct: 54 VFGASPVAMFTTTGEKRPV-----WF----------PGATPPAYLTGEFPADRGFDPLGL 98
Query: 67 SADPEIFAKNRELKVIHARWAMLGVL 92
+ DP + + R +V H+R AMLGV+
Sbjct: 99 AKDPATYERMRSSEVFHSRLAMLGVV 124
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+ G + M T G+ +PV W+ P YLTGEFP D G+D L
Sbjct: 416 VFGASPVAMFTTTGEKRPV-----WF----------PGATPPAYLTGEFPADRGFDPLGL 460
Query: 67 SADPEIFAKNRELKVIHARWAMLGVL 92
+ DP + + R +V H+R AMLGV+
Sbjct: 461 AKDPATYERMRSSEVFHSRLAMLGVV 486
>gi|224108105|ref|XP_002314723.1| predicted protein [Populus trichocarpa]
gi|222863763|gb|EEF00894.1| predicted protein [Populus trichocarpa]
Length = 62
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 95 FKAGAQIFSEGGLDYLENPSLIHAQSILAVWAIQ 128
FKAGAQIFSEGGLD L NPSLIHAQSILA++ Q
Sbjct: 24 FKAGAQIFSEGGLDCLGNPSLIHAQSILAIFQAQ 57
>gi|226431242|gb|ACO55633.1| chloroplast photosystem II type I chlorophyll a/b-binding protein
[Arachis diogoi]
Length = 69
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLT 52
G G +TMRK A K VSSGS WYGPDRVKYL P SG P YLT
Sbjct: 28 GVGRVTMRKAATKQ--VSSGSPWYGPDRVKYLGPFSGEPPSYLT 69
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 42 PLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
P+ P +LTGE+PGDYG+D A L DP FA +++H RWAML L
Sbjct: 36 PVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAAL 86
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP YL GE GDYGWD L ADP R+ +++HARWAMLGV
Sbjct: 41 APDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGV 85
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 31 WYGPDRVKY-----LDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
WYGPDR KY LDP P Y+ GE GDYG+D L + K R +V+H R
Sbjct: 58 WYGPDRPKYLPTGLLDPAD--IPAYMNGELAGDYGYDPLGLGNKGGV-EKYRPYEVLHGR 114
Query: 86 WAMLGVL 92
WAMLGV+
Sbjct: 115 WAMLGVV 121
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP YL GE GDYGWD L A PE R+ +++HARWAML V
Sbjct: 53 APSYLNGELAGDYGWDPLGLGAKPEALKWYRQAELVHARWAMLAV 97
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 28/132 (21%)
Query: 26 SSGSQWYGPDRVKYLDP----LSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKV 81
S S+WYGP+R YL ++ P Y+ G GDYG+D L D +I A+ R +V
Sbjct: 103 SDKSKWYGPNRRLYLPAGLLDINTDVPSYMNGTLAGDYGFDPLQLGKDGKI-AQYRIAEV 161
Query: 82 IHARWAMLGVLCCFKAGA------------QIFSEGGL---DYLENPSLIHAQSILAVWA 126
HARWAML V A ++F +G + L NP L A
Sbjct: 162 QHARWAMLAVPGVVIPEALGVPGGNWTETGKVFLDGEAGRPEILGNPYLFT--------A 213
Query: 127 IQVILMGAVGGY 138
I+V L+ V GY
Sbjct: 214 IEVALLAGVEGY 225
>gi|157965827|gb|ABW06950.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 610
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
P YLTGEFP D G+D A L+ADP+++ + R +V + R AML ++ C
Sbjct: 259 PAYLTGEFPADRGFDPAGLAADPKVYERMRIAEVFNGRLAMLAIVGC 305
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
P +LTGE+P D G+D L+ADP ++A+ R +V HAR +ML ++
Sbjct: 76 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIV 120
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
P +LTGE+P D G+D L+ADP ++A+ R +V HAR +ML ++
Sbjct: 447 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIV 491
>gi|356552039|ref|XP_003544379.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein 4,
chloroplastic-like [Glycine max]
Length = 274
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%)
Query: 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90
WYG D +L +S P YLTGE PGDY +D L DP K +++HARW L
Sbjct: 71 WYGEDGPPWLGSISYKYPSYLTGEMPGDYDFDIVGLGQDPVELXKYFNFEILHARWVTLA 130
Query: 91 VLCC 94
+
Sbjct: 131 FVSA 134
>gi|192764595|gb|ACF05841.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAELIHGRWAMAAVVSIFVGQAW----SGI 90
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q+ILMG V
Sbjct: 91 PWFEACADPGAIAPFSFGSLLGTQLILMGWV 121
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 31 WYGPDRVKY-----LDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
WYGPDR KY LDP P Y+ GE GDYG+D L + K R +V+H R
Sbjct: 65 WYGPDRPKYLPTGLLDPAD--IPAYMNGELAGDYGYDPLGLGNKGGV-EKYRPYEVLHGR 121
Query: 86 WAMLGVL 92
WAMLGV+
Sbjct: 122 WAMLGVV 128
>gi|192764591|gb|ACF05839.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764593|gb|ACF05840.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVSIFVGQAW----SGI 90
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q+ILMG V
Sbjct: 91 PWFEAGADPGAIAPFSFGSLLGTQLILMGWV 121
>gi|19852123|gb|AAM00016.1|AF493613_1 chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 64
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Query: 30 QWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTAC 65
+WYGP+R K+L P S GA P YLTGE PGD+GWDTA
Sbjct: 28 EWYGPNRAKWLGPYSDGAVPSYLTGEQPGDHGWDTAA 64
>gi|157965823|gb|ABW06948.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 582
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
P YLTGEFP D G+D A L+ADP+++ + R +V + R AML ++ C
Sbjct: 229 PAYLTGEFPADRGFDPAGLAADPKVYERMRIAEVFNGRLAMLAIVGC 275
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
P +LTGE+P D G+D L+ADP ++A+ R +V HAR +ML ++
Sbjct: 46 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIV 90
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
P +LTGE+P D G+D L+ADP ++A+ R +V HAR ML ++
Sbjct: 419 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLCMLAIV 463
>gi|351728089|ref|NP_001236415.1| uncharacterized protein LOC100527463 [Glycine max]
gi|255632410|gb|ACU16555.1| unknown [Glycine max]
Length = 259
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM VL F A G+
Sbjct: 72 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGV 127
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P+ I S + Q+ILMG V
Sbjct: 128 PWFEAGADPNAIAPFSFGTLLGTQLILMGWV 158
>gi|356525886|ref|XP_003531552.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Glycine max]
Length = 261
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM VL F A G+
Sbjct: 73 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGV 128
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P+ I S + Q+ILMG V
Sbjct: 129 PWFEAGADPNAIAPFSFGTLLGTQLILMGWV 159
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 29/45 (64%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP YL GE GDYGWD L ADP R+ ++ HARWAMLGV
Sbjct: 29 APEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 73
>gi|255629343|gb|ACU15016.1| unknown [Glycine max]
Length = 247
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM VL F A G+
Sbjct: 73 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGV 128
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P+ I S + Q+ILMG V
Sbjct: 129 PWFEAGADPNAIAPFSFGTLLGTQLILMGWV 159
>gi|192764599|gb|ACF05843.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764603|gb|ACF05845.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAELIHGRWAMAAVVGIFVGQAW----SGI 90
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q+ILMG V
Sbjct: 91 PWFEAGADPGAIAPFSFGSLLGTQLILMGWV 121
>gi|192764577|gb|ACF05832.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAELIHGRWAMAAVVGIFVGQAW----SGI 90
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q+ILMG V
Sbjct: 91 PWFEACADPGAIAPFSFGSLLGTQLILMGWV 121
>gi|115833|sp|P27524.1|CB4A_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10A,
chloroplastic; Short=CAB-10A; Short=LHCP; Flags:
Precursor
gi|170394|gb|AAA34143.1| a-binding protein [Solanum lycopersicum]
Length = 256
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM VL F A G+
Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGI 123
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S + Q+ILMG V
Sbjct: 124 PWFEAGADPGAIAPFSFGTLLGTQLILMGWV 154
>gi|192764617|gb|ACF05852.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW----SGI 90
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q+ILMG V
Sbjct: 91 PWFEAGADPGAIAPFSFGSLLGTQLILMGWV 121
>gi|192764579|gb|ACF05833.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764581|gb|ACF05834.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764583|gb|ACF05835.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764585|gb|ACF05836.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764587|gb|ACF05837.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764589|gb|ACF05838.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764601|gb|ACF05844.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764605|gb|ACF05846.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764607|gb|ACF05847.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764609|gb|ACF05848.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764611|gb|ACF05849.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764613|gb|ACF05850.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764615|gb|ACF05851.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764619|gb|ACF05853.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764621|gb|ACF05854.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW----SGI 90
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q+ILMG V
Sbjct: 91 PWFEAGADPGAIAPFSFGSLLGTQLILMGWV 121
>gi|192764597|gb|ACF05842.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW----SGI 90
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q+ILMG V
Sbjct: 91 PWFEAGADPGAIAPFSFGSLLGTQLILMGWV 121
>gi|8954298|gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length = 258
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F A G+
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGV 125
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P+ I S ++ Q+ILMG V
Sbjct: 126 PWFEAGADPNAIAPFSFGSLLGTQLILMGWV 156
>gi|255585659|ref|XP_002533515.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526625|gb|EEF28871.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 256
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVIGIFVGQAW----SGI 123
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q+ILMG V
Sbjct: 124 PWFEAGADPGAIAPFSFGSLLGTQLILMGWV 154
>gi|192764575|gb|ACF05831.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW----SGI 90
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q+ILMG V
Sbjct: 91 PWFEACADPGAIAPFSFGSLLGTQLILMGWV 121
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 1 SLAASEIHGKG---------CITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYL 51
SL EI KG +T R A K VS+ + PDR + P +L
Sbjct: 12 SLPNREIRQKGFPDRTPTCLSLTRRTVAYATKGVSAVCEPLPPDRPLWFP--GSSPPEWL 69
Query: 52 TGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL----------CCFKAGAQI 101
G PGD+G+D L +DPE+ + +++HARWAML V +
Sbjct: 70 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFGILVPELLEKIGYIENFSW 129
Query: 102 FSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGG 137
+ G +Y +P+ ++ +Q+ LMG V G
Sbjct: 130 YDAGAREYFVDPT--------TLFVVQMGLMGWVEG 157
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 1 SLAASEIHGKG---------CITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYL 51
SL EI KG +T R A K VS+ + PDR + P +L
Sbjct: 12 SLPNREIRQKGFPERTPTCLSLTRRTIANATKGVSAVCEPLPPDRPLWFP--GSSPPEWL 69
Query: 52 TGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLE 111
G PGD+G+D L +DPE+ + +++H+RWAML V ++ G Y+E
Sbjct: 70 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILV--PELLERIG--YIE 125
Query: 112 NPSLIHAQSI------LAVWAIQVILMGAVGG 137
N S A + ++ +Q+ LMG V G
Sbjct: 126 NFSWYDAGTREYFVDPTTLFVVQMGLMGWVEG 157
>gi|413919930|gb|AFW59862.1| chlorophyll a/b-binding apoprotein CP24 Precursor [Zea mays]
Length = 248
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F A G+
Sbjct: 60 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGI 115
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +PS I S ++ Q++LMG V
Sbjct: 116 PWFEAGADPSAIAPFSFGSLLGTQLLLMGWV 146
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 1 SLAASEIHGKG---------CITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYL 51
SL EI KG +T R A K VS+ + PDR + P +L
Sbjct: 12 SLPNREIRQKGFPERTPTCLSLTRRTIANATKGVSAVCEPLPPDRPLWFP--GSSPPEWL 69
Query: 52 TGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLE 111
G PGD+G+D L +DPE+ + +++H+RWAML V ++ G Y+E
Sbjct: 70 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILV--PELLERIG--YIE 125
Query: 112 NPSLIHAQSI------LAVWAIQVILMGAVGG 137
N S A + ++ +Q+ LMG V G
Sbjct: 126 NFSWYDAGTREYFVDPTTLFVVQMGLMGWVEG 157
>gi|388506818|gb|AFK41475.1| unknown [Lotus japonicus]
Length = 260
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F A G+
Sbjct: 72 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGV 127
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P+ I S ++ Q+ILMG V
Sbjct: 128 PWFEAGADPNAIAPFSFGSLLGTQLILMGWV 158
>gi|224054274|ref|XP_002298178.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118486723|gb|ABK95197.1| unknown [Populus trichocarpa]
gi|222845436|gb|EEE82983.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM VL F A G+
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGI 124
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q++LMG V
Sbjct: 125 PWFEAGADPGAIAPFSFGSLLGTQLLLMGWV 155
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP YL G+ GDYGWD L ADP R+ ++ HARWAMLGV
Sbjct: 41 APEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 85
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 23/139 (16%)
Query: 9 GKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSA 68
GK + + T G VS+ + PDR + P +L G PGD+G+D L +
Sbjct: 68 GKAKVKLNATKGG---VSTVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGS 122
Query: 69 DPEIFAKNRELKVIHARWAMLGVLCC----------FKAGAQIFSEGGLDYLENPSLIHA 118
DPE+ + +++H+RWAML V F F G +Y +P+
Sbjct: 123 DPELLKWFAQAELMHSRWAMLAVAGILIPEWLESLGFIENYNWFDAGAREYFADPT---- 178
Query: 119 QSILAVWAIQVILMGAVGG 137
++ +Q++LMG V G
Sbjct: 179 ----TLFIVQLVLMGWVEG 193
>gi|195617280|gb|ACG30470.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|195639966|gb|ACG39451.1| chlorophyll a-b binding protein CP24 [Zea mays]
Length = 244
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F A G+
Sbjct: 56 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGI 111
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +PS I S ++ Q++LMG V
Sbjct: 112 PWFEAGADPSAIAPFSFGSLLGTQLLLMGWV 142
>gi|110377772|gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
Length = 257
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM VL F A G+
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGI 124
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q++LMG V
Sbjct: 125 PWFEAGADPGAIAPFSFGSLLGTQLLLMGWV 155
>gi|297850008|ref|XP_002892885.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
gi|297338727|gb|EFH69144.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM VL F Q +S G+
Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV--GQAWS--GV 123
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E P I S ++ Q++LMG V
Sbjct: 124 PWFEAGAQPEAIAPFSFGSLLGTQLLLMGWV 154
>gi|224070503|ref|XP_002303160.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118487218|gb|ABK95437.1| unknown [Populus trichocarpa]
gi|118489807|gb|ABK96703.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222840592|gb|EEE78139.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F Q +S G+
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV--GQAWS--GI 124
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q+ILMG V
Sbjct: 125 PWFEAGADPGAIAPFSFGSLLGTQLILMGWV 155
>gi|357445799|ref|XP_003593177.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
gi|355482225|gb|AES63428.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
Length = 261
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F A G+
Sbjct: 73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGV 128
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P+ I S + Q+ILMG V
Sbjct: 129 PWFEAGADPNAIAPFSFGTLLGTQLILMGWV 159
>gi|157965819|gb|ABW06946.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 823
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +LTGE+P D G+D L+ADP+++A+ R +V H R AML ++ C
Sbjct: 286 PAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCI 333
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +LTGE+P D G+D L+ADP+++A+ R +V H R AML ++ C
Sbjct: 660 PAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCI 707
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+ G G + M +G+ W+ P+ + AP +LTGE+ GD G+D A L
Sbjct: 70 LTGGGSVAMFYASGRKTQSEDRPLWF-PNTL---------APSWLTGEYFGDRGFDPAGL 119
Query: 67 SADPEIFAKNRELKVIHARWAMLGVL 92
+ADPE F + R +V H R AML V+
Sbjct: 120 AADPETFERMRIAEVYHGRLAMLAVV 145
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P YLTGE GD G+D A L+ADP F + + +V H R +ML ++ C
Sbjct: 470 PRYLTGEAFGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCL 517
>gi|162461245|ref|NP_001105375.1| light harvesting chlorophyll a/b binding protein6 precursor [Zea
mays]
gi|733458|gb|AAA64416.1| chlorophyll a/b-binding apoprotein CP24 precursor [Zea mays]
Length = 247
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE VIH RWAM VL F A G+
Sbjct: 59 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREADVIHGRWAMAAVLGIFVGQAW----SGI 114
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P+ I S ++ Q++LMG V
Sbjct: 115 PWFEAGADPTRIAPFSFGSLLGTQLLLMGWV 145
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 12/96 (12%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +LTG P DYG+D L +P A+ +E ++IH+RWAMLGV AG + + G+
Sbjct: 47 PAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIHSRWAMLGVAGA--AGQEAIT--GV 102
Query: 108 DYLENP-----SLIHAQS---ILAVWAIQVILMGAV 135
++E P + + A+S + V AI+V +M V
Sbjct: 103 TWIEAPVQDSQTYLGAESPFPLPVVVAIEVFVMAFV 138
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 20/136 (14%)
Query: 12 CITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPE 71
C ++ K VSS + PDR + P +L G PGD+G+D L +DPE
Sbjct: 32 CQAVKVRVNATKGVSSVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPE 89
Query: 72 IFAKNRELKVIHARWAML---GVLCC-------FKAGAQIFSEGGLDYLENPSLIHAQSI 121
+ ++IH RWAML G+L F F G +Y +P+
Sbjct: 90 SLKWFAQAELIHGRWAMLAAAGILIPEWLERLGFIDNFNWFDAGTREYFADPT------- 142
Query: 122 LAVWAIQVILMGAVGG 137
++ +Q+ILMG + G
Sbjct: 143 -TLFVVQLILMGWIEG 157
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 20/136 (14%)
Query: 12 CITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPE 71
C ++ K VSS + PDR + P +L G PGD+G+D L +DPE
Sbjct: 32 CQAVKVRVNATKGVSSVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPE 89
Query: 72 IFAKNRELKVIHARWAML---GVLCC-------FKAGAQIFSEGGLDYLENPSLIHAQSI 121
+ ++IH RWAML G+L F F G +Y +P+
Sbjct: 90 SLKWFAQAELIHGRWAMLAAAGILIPEWLERLGFIDNFNWFDAGTREYFADPT------- 142
Query: 122 LAVWAIQVILMGAVGG 137
++ +Q+ILMG + G
Sbjct: 143 -TLFVVQLILMGWIEG 157
>gi|356512075|ref|XP_003524746.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein
CP24 10A, chloroplastic-like [Glycine max]
Length = 258
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 70 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW----SGV 125
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P+ I S ++ Q++LMG V
Sbjct: 126 PWFEAGADPNAIAPFSFGSLLGTQLLLMGWV 156
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
A + G G +R+ A +P S + PDR + P +L G PGD+G+D
Sbjct: 27 ARTSFLGAGRTKLREAAARPSFAVSAA---APDRPIWFP--GSVPPPWLDGSLPGDFGFD 81
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
L +DPE N + +++H RWAMLG F
Sbjct: 82 PFGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 114
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 32 YGPDRVKYLDPL------SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
YG R K+L G P YLTGE PGD GWD + A +I K RE ++IH R
Sbjct: 1240 YGERRKKFLPAALLNVTGQGVVPPYLTGEMPGDVGWDPLQMGAQRDIM-KLRERELIHGR 1298
Query: 86 WAMLGVL 92
WAML +
Sbjct: 1299 WAMLAAI 1305
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Mesostigma viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP +L G PGD+G+D L+ DP A+ RE +V++ RWAMLGV
Sbjct: 48 APAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGV 92
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP +L G+ P DYG+D L P+ A+ RE +++HARWAM+GV
Sbjct: 40 APAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMHARWAMMGV 84
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 24/127 (18%)
Query: 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM 88
S YG RVK+L P +L G GD G+D L D + REL+++HARWAM
Sbjct: 155 SSLYGARRVKFLGDAEYEYPAHLDGSLCGDAGFDPLGLGKDD--LPRMRELELLHARWAM 212
Query: 89 LGVLCC-------------------FKAG-AQIFSEGGLDY--LENPSLIHAQSILAVWA 126
LG++ +K G A++ S+ LDY L+ + I + A
Sbjct: 213 LGIVGVAVPELLERYGVADLGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAA 272
Query: 127 IQVILMG 133
QV+LMG
Sbjct: 273 CQVVLMG 279
>gi|270308992|dbj|BAI52949.1| light-harvesting complex II protein [Citrullus lanatus subsp.
vulgaris]
Length = 255
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 67 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW----SGI 122
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q++LMG V
Sbjct: 123 PWFEAGADPGAIAPFSFGSLLGTQLLLMGWV 153
>gi|449446427|ref|XP_004140973.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
gi|449497079|ref|XP_004160305.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
Length = 255
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 67 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW----SGI 122
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q++LMG V
Sbjct: 123 PWFEAGADPGAIAPFSFGSLLGTQLLLMGWV 153
>gi|50313237|gb|AAT74560.1| Lhcb6 protein [Brassica rapa subsp. pekinensis]
Length = 254
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F A G+
Sbjct: 66 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGV 121
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q++LMG V
Sbjct: 122 PWFEAGADPRAIAPFSFGSLLGTQLLLMGWV 152
>gi|356524850|ref|XP_003531041.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 1 [Glycine max]
gi|356524852|ref|XP_003531042.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 2 [Glycine max]
Length = 258
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 70 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW----SGV 125
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P+ I S ++ Q++LMG V
Sbjct: 126 PWFEAGADPNAIAPFSFGSLLGTQLLLMGWV 156
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 50 YLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
+L G PGDYG+D LSADPE+ + ++ HARWAMLGV C
Sbjct: 48 HLDGSLPGDYGFDPLSLSADPEMRQWMVQAELQHARWAMLGVAGC 92
>gi|255646598|gb|ACU23773.1| unknown [Glycine max]
Length = 258
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGDYG+D L DP RE ++IH RWAM V+ F A G+
Sbjct: 70 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAW----SGV 125
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P+ I S ++ Q++LMG V
Sbjct: 126 PWFEAGADPNAIAPFSFGSLLGTQLLLMGWV 156
>gi|312281533|dbj|BAJ33632.1| unnamed protein product [Thellungiella halophila]
Length = 258
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F A G+
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGV 125
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q++LMG V
Sbjct: 126 PWFEAGADPRAIAPFSFGSLLGTQLLLMGWV 156
>gi|115834|sp|P27525.1|CB4B_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10B,
chloroplastic; Short=CAB-10B; Short=LHCP; Flags:
Precursor
gi|170400|gb|AAA34146.1| chlorophyll b-binding protein [Solanum lycopersicum]
Length = 256
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F A G+
Sbjct: 68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGI 123
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q++LMG V
Sbjct: 124 PWFEAGADPGAIAPFSFGSLLGTQLLLMGWV 154
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L+ PE FA+ +E ++IH RWAML V
Sbjct: 55 PAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAV 98
>gi|157965825|gb|ABW06949.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 342
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 2 LAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGW 61
L+A+ + G G + M TAG+ DR P G AP +LTG+ GD G+
Sbjct: 140 LSANLLTGGGSLAMFSTAGQKT-----------DRRPLWFP-GGYAPSWLTGQHFGDRGF 187
Query: 62 DTACLSADPEIFAKNRELKVIHARWAMLGVL 92
D A L+ADP++F + R +V H R AML ++
Sbjct: 188 DPAGLAADPKVFERMRVSEVYHGRLAMLAIV 218
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 7 IHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACL 66
+ +GC+ AG K VS+ + GPDR + S P +L G PGD+G+D L
Sbjct: 41 VPTRGCL---HRAGAAKGVSAVCEPLGPDRPVWFPGTS--PPPWLDGSLPGDFGFDPLGL 95
Query: 67 SADPEIFAKNRELKVIHARWAMLGVLCC----------FKAGAQIFSEGGLDYLENP-SL 115
++PE + +++H+RWAML V F ++ G +Y +P +L
Sbjct: 96 GSEPETLRWFAQAELMHSRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREYFADPWTL 155
Query: 116 IHAQSILAVWA 126
AQ L WA
Sbjct: 156 FIAQMALMGWA 166
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%)
Query: 45 GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
G AP +L G PGD+G+D L ADPE A E + +HARWAML V
Sbjct: 46 GDAPAHLDGSLPGDFGFDPLGLGADPERLAWFAESERVHARWAMLAV 92
>gi|226501904|ref|NP_001141632.1| uncharacterized protein LOC100273752 [Zea mays]
gi|226531392|ref|NP_001148406.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|194705338|gb|ACF86753.1| unknown [Zea mays]
gi|195619056|gb|ACG31358.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|414584819|tpg|DAA35390.1| TPA: chlorophyll a-b binding protein CP24 isoform 1 [Zea mays]
gi|414584820|tpg|DAA35391.1| TPA: chlorophyll a-b binding protein CP24 isoform 2 [Zea mays]
Length = 253
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F A G+
Sbjct: 65 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGI 120
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q++LMG V
Sbjct: 121 PWFEAGADPGAIAPFSFGSLLGTQLLLMGWV 151
>gi|15218330|ref|NP_173034.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
gi|8927661|gb|AAF82152.1|AC034256_16 Identical to Lhcb6 protein from Arabidopsis thaliana gb|AF134130
and is a member of the Chlorophyll A-B binding proteins
PF|00504. ESTs gb|AI100562, gb|AI999227, gb|AA067457,
gb|BE037598, gb|BE039058, gb|BE038945, gb|BE038657,
gb|BE038604, gb|H76294, gb|H77256, gb|N65776, gb|N38000,
gb|R90377, gb|R90578, gb|R90082, gb|T44923, gb|T76598,
gb|T04144, gb|T43786, gb|T76834, gb|T04153, gb|T45475,
gb|T76179, gb|T46781, gb|T45938, gb|T45430, gb|W43165,
gb|Z18774 come from this gene [Arabidopsis thaliana]
gi|12083258|gb|AAG48788.1|AF332425_1 putative chlorophyll binding protein [Arabidopsis thaliana]
gi|17473665|gb|AAL38289.1| Lhcb6 protein [Arabidopsis thaliana]
gi|20148631|gb|AAM10206.1| chlorophyll A-B binding protein [Arabidopsis thaliana]
gi|332191248|gb|AEE29369.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
Length = 258
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F Q +S G+
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV--GQAWS--GV 125
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E P I S ++ Q++LMG V
Sbjct: 126 AWFEAGAQPDAIAPFSFGSLLGTQLLLMGWV 156
>gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6 protein [Arabidopsis thaliana]
Length = 258
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F Q +S G+
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV--GQAWS--GV 125
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E P I S ++ Q++LMG V
Sbjct: 126 AWFEAGAQPDAIAPFSFGSLLGTQLLLMGWV 156
>gi|242074752|ref|XP_002447312.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
gi|241938495|gb|EES11640.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
Length = 255
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F A G+
Sbjct: 67 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGI 122
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E +P I S ++ Q++LMG V
Sbjct: 123 PWFEAGADPGAIAPFSFGSLLGTQLLLMGWV 153
>gi|388505428|gb|AFK40780.1| unknown [Medicago truncatula]
Length = 230
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
K VS + PDR + P +L G PGD+G+D L +DPE+ + +++
Sbjct: 49 KGVSDVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELM 106
Query: 83 HARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSI------LAVWAIQVILMGAVG 136
HARWAMLGV +I + G Y++N S +A S+ ++ +Q+ LMG V
Sbjct: 107 HARWAMLGVSGILI--PEILEKIG--YVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVE 162
Query: 137 G 137
G
Sbjct: 163 G 163
>gi|303288868|ref|XP_003063722.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
gi|226454790|gb|EEH52095.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
Length = 1523
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 32 YGPDRVKYL-DPL------SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
YG R K+L D L S P YLTGE PGD GWD + A ++ K RE ++IH
Sbjct: 1316 YGTTRRKFLPDSLLASLGPSTVVPAYLTGELPGDVGWDPLQMGAQRDL-TKLRERELIHG 1374
Query: 85 RWAMLGVL 92
RWAML +
Sbjct: 1375 RWAMLAAV 1382
>gi|357163903|ref|XP_003579885.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Brachypodium distachyon]
Length = 256
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F Q +S G+
Sbjct: 68 PSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV--GQAYS--GV 123
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E P + S ++ Q++LMG V
Sbjct: 124 PWFEAGAQPGAVAPFSFGSLLGTQLLLMGWV 154
>gi|126251|sp|P08976.1|LH18_EUGGR RecName: Full=Light-harvesting complex I LH38 proteins; Contains:
RecName: Full=LH38 protein 1; Contains: RecName:
Full=LH38 protein 2; Contains: RecName: Full=LH38
protein 3; Flags: Precursor
gi|755729|emb|CAA31338.1| unnamed protein product [Euglena gracilis]
Length = 530
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCC 94
P LTGE+P D G+D L+ADP+++A+ R +V H R AML + C
Sbjct: 197 PALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGC 243
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
AP +L GE+ GD G+D A L+ADP+ F + R +V H R AML V+
Sbjct: 11 APSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVV 56
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P YLTGE GD G+D A L+ADP F + + +V H R +ML ++ C
Sbjct: 381 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCL 428
>gi|115458738|ref|NP_001052969.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|21740892|emb|CAD40888.1| OSJNBa0036B21.6 [Oryza sativa Japonica Group]
gi|113564540|dbj|BAF14883.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|125548549|gb|EAY94371.1| hypothetical protein OsI_16135 [Oryza sativa Indica Group]
gi|125548552|gb|EAY94374.1| hypothetical protein OsI_16138 [Oryza sativa Indica Group]
gi|215740813|dbj|BAG96969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F A G+
Sbjct: 64 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGV 119
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E P I S ++ Q++LMG V
Sbjct: 120 PWFEAGAQPEAIAPFSFGSLLGTQLLLMGWV 150
>gi|326487444|dbj|BAJ89706.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493456|dbj|BAJ85189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529461|dbj|BAK04677.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F Q +S G+
Sbjct: 67 PSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFI--GQAYS--GV 122
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E P + S ++ Q++LMG V
Sbjct: 123 PWFEAGAQPGAVAPFSFGSLLGTQLLLMGWV 153
>gi|543939|sp|P36494.1|CB4_SPIOL RecName: Full=Chlorophyll a-b binding protein CP24, chloroplastic;
Flags: Precursor
gi|437991|emb|CAA81105.1| 20 kDa protein of CP24 precursor protein [Spinacia oleracea]
Length = 261
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L DP RE ++IH RWAML VL F
Sbjct: 73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF 120
>gi|403241542|gb|AFR32945.1| light-harvesting complex photosystem II, partial [Selaginella
martensii]
Length = 226
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGDYG+D L DP RE ++IH RWAM VL F
Sbjct: 38 PSWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEIIHGRWAMAAVLGIF 85
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
K VS + PDR + P +L G PGD+G+D L +DPE+ + +++
Sbjct: 49 KGVSDVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELM 106
Query: 83 HARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSI------LAVWAIQVILMGAVG 136
HARWAMLGV +I + G Y++N S +A S+ ++ +Q+ LMG V
Sbjct: 107 HARWAMLGVSGILI--PEILEKIG--YVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVE 162
Query: 137 G 137
G
Sbjct: 163 G 163
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D LS+DPE N + +++H RWAMLG F
Sbjct: 61 PEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLGAAGIF 108
>gi|168009690|ref|XP_001757538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168009894|ref|XP_001757640.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691232|gb|EDQ77595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691334|gb|EDQ77697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 219
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFK----AGAQIFS 103
P +L G PGDYG+D L DP RE ++IH RWAM V+ F +G F
Sbjct: 31 PEWLDGSLPGDYGFDPLGLGRDPAALKWYREAELIHGRWAMAAVVGIFVGQGWSGVPWFE 90
Query: 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAV 135
G +P+ + S ++ Q++LMG V
Sbjct: 91 AGA-----DPAALAPFSFGSLLGTQLLLMGWV 117
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At
3.4 Angstrom Resolution
Length = 186
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D LS+DPE N + +++H+RWAMLG F
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIF 48
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 12/110 (10%)
Query: 34 PDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLC 93
PDR + P +L G PGD+G+D L +DPE+ + +++HARWAMLGV
Sbjct: 52 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSG 109
Query: 94 CFKAGAQIFSEGGLDYLENPSLIHA--QSILA----VWAIQVILMGAVGG 137
++ + G Y+EN S A Q A ++ +Q+ LMG V G
Sbjct: 110 ILI--PELLEKMG--YVENYSWYEAGTQEYFADPTTLFIVQLALMGWVEG 155
>gi|116309995|emb|CAH67022.1| H0523F07.10 [Oryza sativa Indica Group]
Length = 252
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L DP RE ++IH RWAM VL F A G+
Sbjct: 64 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW----SGV 119
Query: 108 DYLE---NPSLIHAQSILAVWAIQVILMGAV 135
+ E P I S ++ Q++LMG V
Sbjct: 120 PWFEAGAQPEAIAPFSSGSLLGTQLLLMGWV 150
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G P DYG+D L +DP++ A R+ +++H RWAM+GV
Sbjct: 9 PAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGV 52
>gi|126250|sp|P08975.1|LH15_EUGGR RecName: Full=Light-harvesting complex I LH35 proteins; Contains:
RecName: Full=LH35 protein 1; Contains: RecName:
Full=LH35 protein 2; Flags: Precursor
gi|18418|emb|CAA31337.1| unnamed protein product [Euglena gracilis]
Length = 331
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
P +LTGE+P D G+D ++ADP ++A+ R +V HAR +ML ++
Sbjct: 169 PAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIV 213
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D LS+DPE N + +++H RWAMLG F
Sbjct: 74 PPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIF 121
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L++DPE N++ +++H RWAMLG F
Sbjct: 75 PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIF 122
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D LS+DPE N + +++H RWAMLG F
Sbjct: 73 PPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIF 120
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D LS+DPE N + +++H RWAMLG F
Sbjct: 73 PPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIF 120
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGG 106
AP +L E PGDYG+D L DPE + ++ H RWAMLGV A +I + G
Sbjct: 8 APAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGA--AAPEILTNMG 65
Query: 107 LDYLEN 112
+ L N
Sbjct: 66 ISNLPN 71
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H+RWAMLG F
Sbjct: 75 PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIF 122
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 25 VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
VS+ + GPDR + P +L G PGD+G+D L +DPE+ + +++H+
Sbjct: 48 VSAVCEPLGPDRPLWFP--GSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHS 105
Query: 85 RWAMLGVLCC----------FKAGAQIFSEGGLDYLENP-SLIHAQSILAVWA 126
RWAML V F G DY +P +L +Q L WA
Sbjct: 106 RWAMLAVAGILVPEVLEKWGFMEDYSWIDAGARDYFADPWTLFVSQMALMGWA 158
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 25 VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
VS+ + GPDR + P +L G PGD+G+D L ++PE+ + +++H
Sbjct: 54 VSTVCEPLGPDRPIWFP--GSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHG 111
Query: 85 RWAML---GVLC--------CFKAGAQIFSEGGLDYLENP-SLIHAQSILAVWA 126
RWAML G+L AG F G +Y +P +L +Q L WA
Sbjct: 112 RWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREYFADPWTLFVSQMALMGWA 165
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 25 VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
VS+ + GPDR + P +L G PGD+G+D L ++PE+ + +++H
Sbjct: 54 VSTVCEPLGPDRPIWFP--GSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHG 111
Query: 85 RWAML---GVLC--------CFKAGAQIFSEGGLDYLENP-SLIHAQSILAVWA 126
RWAML G+L AG F G +Y +P +L +Q L WA
Sbjct: 112 RWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREYFADPWTLFVSQMALMGWA 165
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D LS+DP+ N + +++H RWAMLG F
Sbjct: 62 PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 25 VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
VS+ + GPDR + P +L G PGD+G+D L ++PE+ + +++H
Sbjct: 15 VSTVCEPLGPDRPIWFP--GSSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHG 72
Query: 85 RWAML---GVLC--------CFKAGAQIFSEGGLDYLENP-SLIHAQSILAVWA 126
RWAML G+L AG F G +Y +P +L +Q L WA
Sbjct: 73 RWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREYFADPWTLFVSQMALMGWA 126
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D LS+DP+ N + +++H RWAMLG F
Sbjct: 62 PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109
>gi|125605837|gb|EAZ44873.1| hypothetical protein OsJ_29513 [Oryza sativa Japonica Group]
Length = 241
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 25 VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
VS+ + GPDR + P +L G PGD+G+D L +DPE+ + +++H+
Sbjct: 13 VSAVCEPLGPDRPLWFP--GSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHS 70
Query: 85 RWAMLGVLCC----------FKAGAQIFSEGGLDYLENP-SLIHAQSILAVWA 126
RWAML V F G DY +P +L +Q L WA
Sbjct: 71 RWAMLAVAGILVPEVLEKWGFMEDYSWIDAGARDYFADPWTLFVSQMALMGWA 123
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L++DPE N++ +++H RWAMLG F
Sbjct: 76 PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIF 123
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
K VS + PDR + P +L G PG++G+D L +DPE+ + +++
Sbjct: 49 KGVSDVCEPLPPDRPLWFP--GSSPPEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELM 106
Query: 83 HARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQSI------LAVWAIQVILMGAVG 136
HARWAMLGV +I + G Y++N S +A S+ ++ +Q+ LMG V
Sbjct: 107 HARWAMLGVSGILI--PEILEKIG--YVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVE 162
Query: 137 G 137
G
Sbjct: 163 G 163
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 25 VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
VS+ + GPDR + P +L G PGD+G+D L +DPE+ + +++H+
Sbjct: 48 VSAVCEPLGPDRPLWFP--GSSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHS 105
Query: 85 RWAML---GVLCC-------FKAGAQIFSEGGLDYLENP-SLIHAQSILAVWA 126
RWAML G+L F G DY +P +L +Q L WA
Sbjct: 106 RWAMLAAAGILVPEVLEKWGFMEDYSWIDAGARDYFADPWTLFVSQMALMGWA 158
>gi|193872600|gb|ACF23028.1| ST49-6 [Eutrema halophilum]
Length = 215
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D LS+DP+ N + +++H RWAMLG F
Sbjct: 67 PEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIF 114
>gi|365268963|gb|AEW70714.1| light harvesting chlorophyll a-b binding protein 6 [Phyllostachys
edulis]
Length = 250
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGDYG+D L DP RE ++IH RWAM VL F
Sbjct: 62 PPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAVLGIF 109
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D LS+DP+ N + +++H RWAMLG F
Sbjct: 61 PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 108
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D LS+DP+ N + +++H RWAMLG F
Sbjct: 61 PEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIF 108
>gi|167966192|gb|ACA13177.1| chloroplast a/b binding protein cab-PhE11 [Phyllostachys edulis]
Length = 252
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGDYG+D L DP RE ++IH RWAM VL F
Sbjct: 64 PPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAVLGIF 111
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 15/89 (16%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWD 62
A + + + + AG +PV WY P AP +L G PGD+G+D
Sbjct: 19 ATTTRASRRSVVVSAEAGAERPV-----WY---------PGKAPAP-HLDGSLPGDFGFD 63
Query: 63 TACLSADPEIFAKNRELKVIHARWAMLGV 91
LSADPE+ + ++ HARWAMLGV
Sbjct: 64 PLSLSADPEMRKWMVQAELQHARWAMLGV 92
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP +L G PGD+G+D LS DPE+ + ++ HARWAMLGV
Sbjct: 43 APAHLDGSLPGDFGFDPLGLSVDPEMKKWMVQAELQHARWAMLGV 87
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 10 KGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSAD 69
G + +R+ S + PDR + P +L G PGD+G+D L +D
Sbjct: 32 SGRLLLRQAESSSARASFAVRAAAPDRPIWFP--GSTPPPWLDGSLPGDFGFDPLGLGSD 89
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCF 95
PE N + +++H RWAMLG F
Sbjct: 90 PESLRWNVQAELVHCRWAMLGAAGIF 115
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV--LCCFKAGAQIFSE 104
AP +L G PGD+G+D L ADPE +E ++++ARWAM+ V +C +I
Sbjct: 60 APAHLDGTLPGDFGFDPLGLGADPERLKYYQEAELMNARWAMMAVAGICT----TEILGI 115
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMG 133
GG + E + + I A+ A+Q +MG
Sbjct: 116 GG-PWYEAGAAEYDLPINALLAVQFPVMG 143
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
P +LTG GD G+D L PE A+ EL+++HARWAML V+
Sbjct: 188 PPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAMLAVV 232
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 33 GPDRVKY-----LDPLSGGAPFYLTGE--FPGDYGWDTACLSADPEIFAKNRELKVIHAR 85
GP+ +Y L+P+ YL G+ +PG +D LS D + FA+ + +++ H R
Sbjct: 299 GPEYARYVGIRSLEPVG----VYLPGDANYPGGAPFDPFGLSDDADRFARQKVIEIEHGR 354
Query: 86 WAMLGVLCCFKAGAQIFSEG 105
AM+ +L CF A A + EG
Sbjct: 355 LAMVAMLGCF-AQAIVTGEG 373
>gi|225447745|ref|XP_002263201.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Vitis vinifera]
gi|147804704|emb|CAN71620.1| hypothetical protein VITISV_015544 [Vitis vinifera]
Length = 257
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGDYG+D L DP RE ++IH RWAM V+ F
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 116
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H+RWAMLG F
Sbjct: 74 PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIF 121
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H+RWAMLG F
Sbjct: 74 PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIF 121
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IHARWAML V
Sbjct: 54 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAV 97
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP +L + PG+YG+D L DP + E +VIH RWAMLGV
Sbjct: 45 APAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGV 89
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D LS+DP+ N + +++H RWAMLG F
Sbjct: 62 PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLGAAGIF 109
>gi|296081542|emb|CBI20065.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGDYG+D L DP RE ++IH RWAM V+ F
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 116
>gi|302808848|ref|XP_002986118.1| light-harvesting complex [Selaginella moellendorffii]
gi|302815978|ref|XP_002989669.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142640|gb|EFJ09339.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146266|gb|EFJ12937.1| light-harvesting complex [Selaginella moellendorffii]
Length = 259
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 8 HGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGA----PFYLTGEFPGDYGWDT 63
+G + M KP S W L + GG P +L G PGDYG+D
Sbjct: 35 NGARVMAMATRKISAKPASGKKSW--------LPGVRGGGDLVDPEWLDGSLPGDYGFDP 86
Query: 64 ACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
L DP RE ++IH RWAM V+ F
Sbjct: 87 LGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 118
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV--LCCFKAGAQIFSE 104
AP YL G PGD+G+D LS P+ + ++ +ARWAMLGV + I +
Sbjct: 52 APSYLDGSLPGDFGYDPLSLSNSPDKLKWMVQAELQNARWAMLGVAGMLSVDLLQGILPD 111
Query: 105 GGLDYLENPSL--IHAQSILAVWAIQVILMGAV 135
+ + P L ++ +++ IQ+ILMG V
Sbjct: 112 NVPQWYDAPLLADVYPAEWKSLFIIQMILMGFV 144
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGG 106
AP +L GE PGDYG+D L +P+ + ++ H RWAMLGV A +I ++ G
Sbjct: 42 APQHLKGELPGDYGFDPLNLGKEPKDLEWYVQAELQHGRWAMLGVAGA--AAPEILTKMG 99
Query: 107 LDYLEN 112
+ L N
Sbjct: 100 ISDLPN 105
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 24/137 (17%)
Query: 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADP 70
G + + T G VSS + PDR + P +L G PGD+G+D L +DP
Sbjct: 33 GRVRLNATKG----VSSVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDP 86
Query: 71 EIFAKNRELKVIHARWAMLGVL------CC----FKAGAQIFSEGGLDYLENPSLIHAQS 120
E+ + +++H+RWAML V C F + G ++ +P+
Sbjct: 87 ELLRWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAQEFFADPT------ 140
Query: 121 ILAVWAIQVILMGAVGG 137
++ +Q+ LMG V G
Sbjct: 141 --TLFVVQLALMGWVEG 155
>gi|110224748|emb|CAL07974.1| chlorophyll a/b-binding protein, photosystem I [Platanus x
acerifolia]
Length = 167
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L A PE + +E ++IH RWAML V
Sbjct: 56 PPYLDGSAPGDFGFDPLLLGAVPENLERFKESELIHCRWAMLAV 99
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 2 LAASEIHGKGCITMRKTAGKP-KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYG 60
L AS G ++ R + K VSS + PDR + P +L G PGD+G
Sbjct: 29 LVASASPTGGRMSERLVVARAGKEVSSVCEPLPPDRPLWFP--GSAPPEWLDGSLPGDFG 86
Query: 61 WDTACLSADPEIFAKNRELKVIHARWAMLGVL------CC----FKAGAQIFSEGGLDYL 110
+D L +DP+ + ++IH+RWAML V C F + G +Y
Sbjct: 87 FDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGILIPECLERLGFIENFSWYEAGSREYF 146
Query: 111 -ENPSLIHAQSILAVWA 126
++ +L AQ +L WA
Sbjct: 147 ADSTTLFVAQMVLMGWA 163
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 10 KGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSAD 69
G + +R+ S + PDR + P +L G PGD+G+D L +D
Sbjct: 33 SGRLLLRQAESSSARASFAVRAAAPDRPIWFP--GSTPPPWLDGSLPGDFGFDPLGLGSD 90
Query: 70 PEIFAKNRELKVIHARWAMLGVLCCF 95
PE N + ++H RWAMLG F
Sbjct: 91 PESLRWNVQADLVHCRWAMLGAAGIF 116
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 32 YGPDRVKYLDPLSGGAPF--YLTGEFPGDYGWDTACL-SADPEIFAKNRELKVIHARWAM 88
YGP R K+L P G PF +L G GD G+D L S P + REL+++H RWAM
Sbjct: 176 YGPTRRKFL-PDGFGYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWAM 234
Query: 89 LGVL 92
LGV+
Sbjct: 235 LGVV 238
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
K VSS + PDR + P +L G PGD+G+D L +DP+ + ++I
Sbjct: 52 KEVSSVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELI 109
Query: 83 HARWAMLGVL------CC----FKAGAQIFSEGGLDYL-ENPSLIHAQSILAVWA 126
H+RWAML V C F + G +Y ++ +L AQ +L WA
Sbjct: 110 HSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWA 164
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IHARWAML V
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAV 54
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP +L + PG+YG+D L DP + E +VIH RWAMLGV
Sbjct: 9 APAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGV 53
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
K VSS + PDR + P +L G PGD+G+D L +DP+ + ++I
Sbjct: 52 KEVSSVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELI 109
Query: 83 HARWAMLGVL------CC----FKAGAQIFSEGGLDYL-ENPSLIHAQSILAVWA 126
H+RWAML V C F + G +Y ++ +L AQ +L WA
Sbjct: 110 HSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWA 164
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L++DPE N + +++H RWAMLG F
Sbjct: 75 PPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIF 122
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 75 PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIF 122
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 77 PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIF 124
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
K VSS + PDR + P +L G PGD+G+D L +DP+ + ++I
Sbjct: 52 KEVSSVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELI 109
Query: 83 HARWAMLGVL------CC----FKAGAQIFSEGGLDYL-ENPSLIHAQSILAVWA 126
H+RWAML V C F + G +Y ++ +L AQ +L WA
Sbjct: 110 HSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWA 164
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
R K VSS + PDR + P +L G PGD+G+D L +DPE+
Sbjct: 4 RVRLNATKGVSSVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPELLRW 61
Query: 76 NRELKVIHARWAMLGVLCCFKAGAQIFS-EGGLDYLENPSLIH--AQSILA----VWAIQ 128
+ +++H+RWAML V AG I L ++EN S AQ A ++ +Q
Sbjct: 62 FAQAELMHSRWAMLAV-----AGILIPECLERLGFIENFSWYDAGAQEFFADPTTLFVVQ 116
Query: 129 VILMGAVGG 137
+ LMG V G
Sbjct: 117 LALMGWVEG 125
>gi|218199895|gb|EEC82322.1| hypothetical protein OsI_26601 [Oryza sativa Indica Group]
Length = 432
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 68 PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 115
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 22/148 (14%)
Query: 2 LAASEIHGKGCITMRKTAGKPKPVSS------GSQWYGPDRVKYLDPLSGGAPFYLTGEF 55
LA G+ K AG KPVS+ G +WY P YL G
Sbjct: 15 LARKAFVGQAVKASAKPAGA-KPVSTVVRADLGKKWY----------TGAKPPAYLDGSM 63
Query: 56 PGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL-CCFKAGAQIFSEGGL-DYLENP 113
PGDYG+D + +PE+ ++ ++ + RWAM+GV F F L D+ E
Sbjct: 64 PGDYGYDPLRMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALTQFGISDLPDWYEAG 123
Query: 114 SLIHAQS---ILAVWAIQVILMGAVGGY 138
++ A S + + AI++ + V G+
Sbjct: 124 AVAQASSPFDLQTLIAIEIFVFATVEGF 151
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 74 PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIF 121
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 74 PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIF 121
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 74 PPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIF 121
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L++DPE N + +++H RWAMLG F
Sbjct: 86 PPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIF 133
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L +DPE N + +++H RWAMLG F ++ ++ G+
Sbjct: 58 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFI--PELLTKIGI 115
Query: 108 DYLENPSLIHA------QSILAVWAIQVILMG 133
L PS A ++ +++IL+G
Sbjct: 116 --LNTPSWYTAGEQEYFTDTTTLFVVELILIG 145
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 75 PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 122
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 40 LDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
LDP P YL G PGD+G+D L DPE + +++H+R+AMLGVL
Sbjct: 65 LDP-----PTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVL 112
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IHARWAML +
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAI 54
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
AP +L G PGD+G+D L +DPE+ + +++H RWAMLG F
Sbjct: 11 APEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIF 59
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL 107
P +L G PGD+G+D L +DPE N + +++H RWAMLG F ++ ++ G+
Sbjct: 63 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFI--PELLTKIGI 120
Query: 108 DYLENPSLIHA--QSILA----VWAIQVILMG 133
L PS A Q+ A ++ +++IL+G
Sbjct: 121 --LNTPSWYTAGEQTYFADTTTLFIVELILIG 150
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965,
partial [Zea mays]
Length = 273
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L+ PE F + +E +V H RWAML V
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAV 99
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 72 PPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 119
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 75 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 122
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 65 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 112
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L+ PE F + +E +V H RWAML V
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAV 99
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 86 PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 133
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G GDYG+D L A+PE R+ ++ +ARWAMLGV
Sbjct: 45 SPKYLDGNLAGDYGFDPMGLGANPERLTWYRQAELQNARWAMLGV 89
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L+ PE F + +E +V H RWAML V
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAV 99
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP +L G PGD+G+D L ADP+ +E ++++ARWAM+ V
Sbjct: 59 APAHLDGTLPGDFGFDPLGLGADPQRLKYYQEAELMNARWAMMAV 103
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L+ PE F + +E +V H RWAML V
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAV 95
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP +L + PG+YG+D L +P + E +VIH RWAMLGV
Sbjct: 45 APAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGV 89
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP +L + PG+YG+D L +P + E +VIH RWAMLGV
Sbjct: 41 APAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGV 85
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP +L + PG+YG+D L +P + E +VIH RWAMLGV
Sbjct: 45 APAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGV 89
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 60 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 107
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L+ PE F + +E +V H RWAML V
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAV 95
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas
reinhardtii]
Length = 239
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP +L + PG+YG+D L +P + E +VIH RWAMLGV
Sbjct: 45 APAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGV 89
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P YL G PGD+G+D L P+ + +E ++IH RWAML V C
Sbjct: 58 PAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCL 105
>gi|414590634|tpg|DAA41205.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
gi|414590635|tpg|DAA41206.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 196
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 65 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 112
>gi|414590633|tpg|DAA41204.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 199
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE N + +++H RWAMLG F
Sbjct: 65 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIF 112
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L GE PGD+G+D L A+P+ RE +++H+RWAM V
Sbjct: 38 PAHLKGELPGDFGFDPLGLGANPDSLKWFRESELVHSRWAMAAV 81
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 45 GGAPF-YLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFS 103
G AP +L G PGD+G+D LS+DP++ + ++ +ARWAMLGV GA + +
Sbjct: 45 GNAPRAWLDGSLPGDFGYDPLGLSSDPQVLKWMVQAELQNARWAMLGVAGML--GADLAN 102
Query: 104 EGGL----DYLENPSLIHAQSILAVWAIQVILMGAVGG 137
+ GL + E P + + + +Q++L V G
Sbjct: 103 KVGLPAAVQWYEAPLVDYQADWKTLLVVQLVLHAWVEG 140
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L+ PE F + +E +V H RWAML V
Sbjct: 60 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAV 103
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 45 GGAPF-YLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFS 103
G AP +L G PGD+G+D LS+DP++ + ++ +ARWAMLGV GA + +
Sbjct: 41 GNAPRAWLDGSLPGDFGYDPLGLSSDPQVLKWMVQAELQNARWAMLGVAGML--GADLAN 98
Query: 104 EGGL----DYLENPSLIHAQSILAVWAIQVILMGAVGG 137
+ GL + E P + + + +Q++L V G
Sbjct: 99 KVGLPAAVQWYEAPLVDYQADWKTLLVVQLVLHAWVEG 136
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G P D+G+D L +DPE N + +++H RWAMLG F
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIF 130
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
AP +L G PGD+G+D L ++PE+ + +++H RWAMLG F
Sbjct: 70 APEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIF 118
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L+ PE F + +E +V H RWAML V
Sbjct: 7 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAV 50
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAV 98
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G P D+G+D L +DPE N + +++H RWAMLG F
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIF 130
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G P D+G+D L +DPE N + +++H RWAMLG F
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIF 130
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAV 98
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 56 PSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV 99
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE+ + +++H RWAMLG F
Sbjct: 75 PEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIF 122
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 54 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 97
>gi|33772151|gb|AAQ54512.1| chlorophyll a/b-binding protein type I [Malus x domestica]
Length = 147
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 58 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV 101
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVI 82
KP++S S + ++L LS +P YL G PGD G+D L+ DPE + +++
Sbjct: 37 KPMTSSSFKVEAKKGEWLPGLS--SPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELV 94
Query: 83 HARWAMLGV 91
++RWAMLGV
Sbjct: 95 NSRWAMLGV 103
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 98
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 57 PPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAV 100
>gi|116785754|gb|ABK23846.1| unknown [Picea sitchensis]
Length = 161
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G P D+G+D L +DPE N + +++H RWAMLG F
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIF 130
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV 98
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 57 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV 100
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 98
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV 98
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 12 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAV 55
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGG 106
AP +L G P DYG+D L ADPE + +++H RWAMLG+ G ++ ++ G
Sbjct: 51 APAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMV--GPELLTKIG 108
Query: 107 LDYLEN 112
+ L N
Sbjct: 109 MADLPN 114
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 25 VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
VSS + PDR + P +L G PGD+G+D L +DPE + +++HA
Sbjct: 49 VSSVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHA 106
Query: 85 RWAMLGVLCC-----FKAGAQI-----FSEGGLDYLENP-SLIHAQSILAVW 125
RWAML V F++ I + G +Y +P +L+ AQ L W
Sbjct: 107 RWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGW 158
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 25 VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHA 84
VSS + PDR + P +L G PGD+G+D L +DPE + +++HA
Sbjct: 49 VSSVCEPLPPDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHA 106
Query: 85 RWAMLGVLCC-----FKAGAQI-----FSEGGLDYLENP-SLIHAQSILAVW 125
RWAML V F++ I + G +Y +P +L+ AQ L W
Sbjct: 107 RWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGW 158
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L+ PE F + +E ++ H RWAML V
Sbjct: 80 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCV 123
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAV 98
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 2 LAASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGW 61
LA S + G+ + A V+ ++W+ P + + P +L G PGD+G+
Sbjct: 21 LAPSSLSGRSGLPFCAYATTSGRVTMSAEWF-PGQPR---------PAHLDGSSPGDFGF 70
Query: 62 DTACLSADPEIFAKNRELKVIHARWAMLGV 91
D L+ PE F + +E ++ H RWAML V
Sbjct: 71 DPLGLATVPENFERFKESEIYHCRWAMLCV 100
>gi|303272113|ref|XP_003055418.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226463392|gb|EEH60670.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 254
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAM---LGVLCCFKAGAQIFSE 104
P YL G P DYG+D L A+PE +E ++++ RWAM G+L G F E
Sbjct: 51 PSYLDGTMPADYGFDPLRLGANPETLPYLQEAELMNGRWAMHATAGILFTDAVGLPKFWE 110
Query: 105 GGLDYLENPSLIHAQSILAVWAIQVILMG 133
G L + + + AIQV++MG
Sbjct: 111 AGEAALGD------WDLKTLVAIQVVVMG 133
>gi|170425|gb|AAA34156.1| chlorophyll a/b-binding protein Cab-3B, partial [Solanum
lycopersicum]
Length = 51
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 1 SLAASEIHGKGCITMRKTAGKPKPVSSGSQW 31
S ++SEI G G ITMRKTA KPKP SSGS W
Sbjct: 21 SPSSSEISGNGRITMRKTAAKPKPASSGSPW 51
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ARWAMLGV
Sbjct: 55 SPAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGV 99
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL------CCFKAG--- 98
P +L G PGD+G+D L +DPE + +++H RWAMLG C K G
Sbjct: 83 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELCTKLGILN 142
Query: 99 -AQIFSEGGLDYL-ENPSLIHAQSILAVWA 126
++ G L+Y + +L + I WA
Sbjct: 143 TPSWYTAGELEYFTDKTTLFVVEMIFLGWA 172
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE + +++H RWAMLG F
Sbjct: 76 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIF 123
>gi|51535748|dbj|BAD37764.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 147
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRV-KYLD 41
A++ + G+ IT+ K+A KPKP +SGS WYGP+RV ++ D
Sbjct: 39 ASTTLFGEARITIHKSAAKPKPSTSGSPWYGPNRVFRFAD 78
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YLTG PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 62 SPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 106
>gi|170420|gb|AAA34154.1| chlorophyll a/b-binding protein Cab-3A, partial [Solanum
lycopersicum]
Length = 51
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 23/29 (79%)
Query: 3 AASEIHGKGCITMRKTAGKPKPVSSGSQW 31
++SEI G G ITMRKTA KPKP SSGS W
Sbjct: 23 SSSEITGNGRITMRKTAAKPKPASSGSPW 51
>gi|412991092|emb|CCO15937.1| putative lycopene beta cyclase [Bathycoccus prasinos]
Length = 1593
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 17/127 (13%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGPDRVKYLDP----LSGG---APFYLTGEFP 56
+E G +M KT K +S + YG DR+K+L L G P +LTG P
Sbjct: 1363 TTEYWSNGSQSMVKTVVKNTGLSE-ADLYGNDRIKFLPKSIINLPGENVIVPPHLTGGLP 1421
Query: 57 GDYGWDTACLSADPEIFAKNRELKVIHARWAML---GVLC---CFKAGAQIFSEGGLDYL 110
GD G+D A ++ K RE ++I+ RWAML GVL FK G ++ EG +
Sbjct: 1422 GDIGFDPLKFGAQSDLL-KFRERELINGRWAMLAAIGVLLPEFLFKFG--LYGEGTDQHW 1478
Query: 111 ENPSLIH 117
+ +IH
Sbjct: 1479 WSTKIIH 1485
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L+ PE F + +E ++ H RWAML V
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCV 100
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21,
chloroplastic; AltName: Full=LHCI type I CAB-1B-21;
AltName: Full=LHCI-730 chlorophyll a/b binding protein;
AltName: Full=Light-harvesting complex I 21 kDa
protein; Flags: Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L+ PE F + +E ++ H RWAML V
Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCV 98
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YLTG PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 62 SPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 106
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YLTG PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 62 SPGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGV 106
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L PE F + +E +V H RWAML V
Sbjct: 57 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCV 100
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 62 SPAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGV 106
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV--LCCFKA 97
P YL G GDYG+D L +DPE +E ++++ARWAM+ V +C +A
Sbjct: 56 PDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAELMNARWAMMAVAGICTTEA 107
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor
[Micromonas sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor
[Micromonas sp. RCC299]
Length = 249
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGDYG+D L D A ++ +++HARWAMLGV
Sbjct: 51 PKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARWAMLGV 94
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D+ L P + +E ++IH RWAML V
Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAV 99
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE + +++H RWAMLG F
Sbjct: 77 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIF 124
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 62 SPMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGV 106
>gi|116783401|gb|ABK22927.1| unknown [Picea sitchensis]
Length = 126
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
P +L G PGD+G+D L PE + +E ++IH RWAML V+
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVV 101
>gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
gi|18539431|gb|AAL74386.1|AF359118_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
Length = 137
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G PGD+G+D L +DPE + +++H RWAMLG F
Sbjct: 30 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIF 77
>gi|87313173|gb|ABD37883.1| light-harvesting chlorophyll-a/b binding protein Lhca5.1
[Mesostigma viride]
Length = 195
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV-------LCCFKAGA 99
AP +L G PGDYG+D + P +++HARWAMLGV L G+
Sbjct: 63 APEWLNGSLPGDYGFDPVGFGSSPSSLRWMVHAELVHARWAMLGVAGVLGQELVHVTNGS 122
Query: 100 --QIFSEGGLDYL-ENPSLIHAQSIL 122
+ G + Y + P+LI IL
Sbjct: 123 IPHWYEAGKVSYFADTPTLIVVMHIL 148
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 57 PAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAV 100
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAV 100
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAV 100
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 61 SPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGV 105
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 40 LDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
LDP P YL G GDYG+D L DPE + +++HAR+AMLGV
Sbjct: 64 LDP-----PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVF 111
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L PE F + +E +V H RWAML V
Sbjct: 25 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCV 68
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 56 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAV 99
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
AP +L G PGDYG+D L+A+P + +++H RWAMLG F
Sbjct: 74 APKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIF 122
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 61 SPTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGV 105
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 40 LDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
LDP P YL G GDYG+D L DPE + +++HAR+AMLGV
Sbjct: 11 LDP-----PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVF 58
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 54 SPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGV 98
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
AP +L G PGDYG+D L+A+P + +++H RWAMLG F
Sbjct: 23 APKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIF 71
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + +++++RWAMLGV
Sbjct: 62 SPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 106
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L PE + +E ++IH RWAML V
Sbjct: 17 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAV 60
>gi|226856782|gb|ACO87368.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV+
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVV 46
>gi|226856796|gb|ACO87375.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV+
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVV 46
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L P + +E ++IH RWAML V
Sbjct: 56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAV 99
>gi|226856758|gb|ACO87356.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856760|gb|ACO87357.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856762|gb|ACO87358.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856764|gb|ACO87359.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856766|gb|ACO87360.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856768|gb|ACO87361.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar formosana]
gi|226856770|gb|ACO87362.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar formosana]
gi|226856774|gb|ACO87364.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar formosana]
gi|226856776|gb|ACO87365.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar formosana]
gi|226856778|gb|ACO87366.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856780|gb|ACO87367.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856784|gb|ACO87369.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856786|gb|ACO87370.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856788|gb|ACO87371.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856790|gb|ACO87372.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856792|gb|ACO87373.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856794|gb|ACO87374.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856798|gb|ACO87376.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar formosana]
gi|226856800|gb|ACO87377.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar formosana]
gi|226856802|gb|ACO87378.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar formosana]
gi|226856804|gb|ACO87379.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar formosana]
gi|226856806|gb|ACO87380.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856808|gb|ACO87381.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856810|gb|ACO87382.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856812|gb|ACO87383.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856814|gb|ACO87384.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856816|gb|ACO87385.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856818|gb|ACO87386.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856820|gb|ACO87387.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856822|gb|ACO87388.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856824|gb|ACO87389.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar acalycina]
gi|226856826|gb|ACO87390.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar acalycina]
gi|226856828|gb|ACO87391.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar acalycina]
gi|226856830|gb|ACO87392.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar acalycina]
gi|226856832|gb|ACO87393.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar acalycina]
Length = 148
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV+
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVV 46
>gi|226856772|gb|ACO87363.1| chloroplast chlorophyll a-b binding protein 4, partial
[Liquidambar formosana]
Length = 148
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL 92
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV+
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVV 46
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
R+ A KP S S + ++L L +P YL G PGD G+D L+ DPE
Sbjct: 32 REVAFKPMSSSPASFKVEAKKGEWLPGLP--SPAYLNGSLPGDNGFDPLGLAEDPENLKW 89
Query: 76 NRELKVIHARWAMLGV 91
+ ++++ RWAMLGV
Sbjct: 90 FVQAELVNGRWAMLGV 105
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 62 SPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGV 106
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L P + +E ++IH RWAML V
Sbjct: 56 PPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAV 99
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 55 SPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 99
>gi|30694148|ref|NP_850706.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645786|gb|AEE79307.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 164
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L P + +E ++IH RWAML V
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAV 98
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G+ PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 55 SPAYLDGKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGV 99
>gi|145079837|tpg|DAA05940.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Micromonas sp. CCMP490]
Length = 233
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 44 SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
S AP +L G PGD+G+D L ADP +E +++++RWAM+ V
Sbjct: 57 SAVAPPHLDGTLPGDFGFDPLGLGADPARLKYYQEAELMNSRWAMMAV 104
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 46 GAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 61 ASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGV 106
>gi|145332845|ref|NP_001078288.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645787|gb|AEE79308.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 213
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L P + +E ++IH RWAML V
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAV 98
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L P + +E ++IH RWAML V
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAV 98
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 55 SPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 99
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 55 SPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 99
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 55 SPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 99
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 55 SPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 99
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L P + +E ++IH RWAML V
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAV 98
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G P D+G+D L ++PE+ + +++H+RWAMLG F
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIF 120
>gi|30694146|ref|NP_850705.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645784|gb|AEE79305.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 207
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L P + +E ++IH RWAML V
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAV 98
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 50 YLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVL------CC----FKAGA 99
+L G PGD+G+D L +DP+ + ++IH+RWAML V C F
Sbjct: 78 WLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENF 137
Query: 100 QIFSEGGLDYL-ENPSLIHAQSILAVWA 126
+ G +Y ++ +L AQ +L WA
Sbjct: 138 SWYDAGSREYFADSTTLFVAQMVLMGWA 165
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 46 GAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 61 ASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGV 106
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
P +L G P D+G+D L ++PE+ + +++H+RWAMLG F
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIF 120
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At
3.4 Angstrom Resolution
Length = 187
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L P + +E ++IH RWAML V
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAV 50
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 61 SPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 105
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 61 SPSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 105
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 55 SPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGV 99
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 50 YLTGEFPGDYGWDTACLSADPEIFAKNREL--------KVIHARWAMLGVLCCF------ 95
YLTG PGD+GWD L+ + N + +VIH RWAMLG
Sbjct: 128 YLTGSLPGDFGWDPLHLADTNDQDRLNNAMSMEWLSYAEVIHGRWAMLGAAGALSPEVLG 187
Query: 96 KAGAQIFSEGGLDYLENPSLIHAQSILAV 124
KAG I E GL + + L + +++AV
Sbjct: 188 KAGV-IPKETGLTWFQAGGLDSSSNLIAV 215
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 55 SPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGV 99
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 55 SPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGV 99
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 63 SPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGV 107
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp.
lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 40 LDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
LDP P YL G+ GDYG+D L DPE + +++H+R+AMLGV
Sbjct: 53 LDP-----PPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGV 99
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G D L+ DPE + ++++ RWAMLGV
Sbjct: 61 SPSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGV 105
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DP+ + ++++ RWAMLGV
Sbjct: 61 SPTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGV 105
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 46 GAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 59 ASPAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGV 104
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 62/157 (39%), Gaps = 35/157 (22%)
Query: 4 ASEIHGKGCITMRKTAGKPKPVSSGSQWYGP------DRVKY--------------LDPL 43
A+ HG+ C + P P SS S P R ++ LDP
Sbjct: 4 AANAHGRVCTLSSR---PPAPFSSRSTVAMPGHHAESPRARFAVRAIAERATWLPGLDP- 59
Query: 44 SGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFS 103
P YL G PGDYG+D L PE + +++H R+AM GV G +
Sbjct: 60 ----PAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGIL--GTDLIR 113
Query: 104 EGGLDYL-----ENPSLIHAQSILAVWAIQVILMGAV 135
G+ L + + A++ +Q++LMG V
Sbjct: 114 VSGIGNLPVWFEAGATKFDFANTTALFFVQLLLMGFV 150
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 47 APFYLTGEFPGDYGWD------TACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
AP +L G PGD+G+D C +DPE + +++H RWAMLG F
Sbjct: 73 APEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWAMLGAAGIF 127
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 46 GAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWAMLGV
Sbjct: 61 ASPDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGV 106
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G GDYG+D L DPE + +++HAR+AMLG+
Sbjct: 69 SPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGI 113
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G GDYG+D L DPE + +++H+R+AMLGV
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGV 99
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G GDYG+D L DPE + +++H+R+AMLGV
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGV 99
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGD+G+D L+ PE + +E +V H RWAML V
Sbjct: 26 PVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCV 69
>gi|545253|gb|AAB29835.1| LHC II=32 kda photosystem II light-harvesting chlorophyll
a/b-protein complex {N-terminal} [Bryopsis
maxima=siphonous green algae, thylakoid membranes,
Peptide Chloroplast Partial, 39 aa]
Length = 39
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 30 QWYGPDRVKYLDPLSGGA-PFYLTGEFPGDYGWDTA 64
++YGPD +L P S A P YLTGEFPGDY WD+A
Sbjct: 2 EFYGPDYALWLGPYSEEAVPRYLTGEFPGDYXWDSA 37
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G GDYG+D L DPE + +++H+R+AMLGV
Sbjct: 48 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGV 91
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 46 GAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
+P YL G PGD G+D L+ DPE + ++++ RWA LGV
Sbjct: 61 ASPNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGV 106
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L GE PGD+G+D L A+ E +E +++H RWAM V
Sbjct: 39 PAHLKGELPGDFGFDPLGLGANAESLKWFKESELVHCRWAMAAV 82
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G GDYG+D L DPE + +++H+R+AMLGV
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGV 99
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P YL G PGD+G+D L PE + +E ++IH WAML V
Sbjct: 51 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAV 94
>gi|167997433|ref|XP_001751423.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697404|gb|EDQ83740.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 244
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 129 VILMGAVGGYGTAGGPLGEVTDPL 152
V+LMGAV GY AGGPLGEVTDP+
Sbjct: 144 VVLMGAVEGYRVAGGPLGEVTDPI 167
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP +L G PGDYG+D L D + + ++ HARWAMLGV
Sbjct: 45 APSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAELQHARWAMLGV 89
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
P +L G PGDYG+D L+ DP+ A E + + RWAM GV
Sbjct: 49 PAHLNGTLPGDYGYDPIGLATDPDRLAWFVEAERTNGRWAMAGV 92
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 20/132 (15%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
+T +S+ + GPDR + P +L G PGD+G+D ++PE
Sbjct: 48 HRTGATKSSLSTVCEPLGPDRPVWFP--GTAPPPWLDGSLPGDFGFDPLGFGSEPESLRW 105
Query: 76 NRELKVIHARWAMLGVLCC----------FKAGAQIFSEGGLDYLENPSLIHAQSILAVW 125
+ +++H RWAML V F ++ G +Y +P ++
Sbjct: 106 FAQAELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREYFADP--------WTLF 157
Query: 126 AIQVILMGAVGG 137
Q+ LMG V G
Sbjct: 158 VTQMALMGWVEG 169
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 20/132 (15%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
+T +S+ + GPDR + P +L G PGD+G+D ++PE
Sbjct: 48 HRTGATKSSLSTVCEPLGPDRPVWFP--GTAPPPWLDGSLPGDFGFDPLGFGSEPESLRW 105
Query: 76 NRELKVIHARWAMLGVLCC----------FKAGAQIFSEGGLDYLENPSLIHAQSILAVW 125
+ +++H RWAML V F ++ G +Y +P ++
Sbjct: 106 FAQAELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREYFADP--------WTLF 157
Query: 126 AIQVILMGAVGG 137
Q+ LMG V G
Sbjct: 158 VTQMALMGWVEG 169
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 15/100 (15%)
Query: 45 GGAPF-YLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV------LCCFKA 97
G AP +L G PGD+G+D L +DP++ ++ +++H R AM V KA
Sbjct: 51 GNAPAPHLDGSLPGDFGFDPLSLGSDPQLLKWFQQAELVHGRTAMTAVAGILFPAVATKA 110
Query: 98 GA----QIFSEGGLDYLENPSLIHAQSILAVWAIQVILMG 133
G Q + G + NP+ A A+ IQ+IL G
Sbjct: 111 GVVNIPQWYDAGSVWVQNNPNFPFA----ALLFIQIILTG 146
>gi|414876522|tpg|DAA53653.1| TPA: hypothetical protein ZEAMMB73_781826 [Zea mays]
Length = 136
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 54 EFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95
PGD+G+D L DP RE ++IH RWAM VL F
Sbjct: 88 RLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF 129
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 48/104 (46%), Gaps = 28/104 (26%)
Query: 39 YLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI---FAKNREL---KVIHARWAMLGV- 91
YL +S YL G PGD+G+D +S DPE F + L +VIH RWAMLGV
Sbjct: 86 YLMGVSDQNMTYLDGTLPGDFGFDPLGMS-DPEGQGGFVNPQWLAYSEVIHGRWAMLGVA 144
Query: 92 -------------------LCCFKAGAQIFSEGGLDYLENPSLI 116
L FK+GA I +G DY +P+ I
Sbjct: 145 GVVAPEVLGGMGIIPADTGLVWFKSGA-IPPQGTFDYWADPTTI 187
>gi|145346713|ref|XP_001417828.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144578056|gb|ABO96121.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 185
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGV 91
AP +L G GDYG+D L +DP +E ++++ARWAM+ V
Sbjct: 9 APAHLDGTVAGDYGFDPLGLGSDPTRLKYYQEAELMNARWAMMAV 53
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 20/132 (15%)
Query: 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAK 75
+T +S+ + GPDR + P +L G PGD+G+D ++PE
Sbjct: 45 HRTGATKSSLSTVCEPLGPDRPVWFP--GTAPPPWLDGSLPGDFGFDPLGFGSEPESLRW 102
Query: 76 NRELKVIHARWAMLGVLCC----------FKAGAQIFSEGGLDYLENPSLIHAQSILAVW 125
+ +++H RWAML V F ++ G +Y +P ++
Sbjct: 103 FAQAELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREYFADP--------WTLF 154
Query: 126 AIQVILMGAVGG 137
Q+ LMG V G
Sbjct: 155 VTQMALMGWVEG 166
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.139 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,039,813,854
Number of Sequences: 23463169
Number of extensions: 133774500
Number of successful extensions: 272796
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 270274
Number of HSP's gapped (non-prelim): 1691
length of query: 159
length of database: 8,064,228,071
effective HSP length: 121
effective length of query: 38
effective length of database: 9,520,151,918
effective search space: 361765772884
effective search space used: 361765772884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)