Query 040587
Match_columns 159
No_of_seqs 172 out of 810
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:50:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00025 photosystem II light 100.0 8.9E-42 1.9E-46 289.3 12.1 145 11-157 28-190 (262)
2 PLN00187 photosystem II light- 100.0 8.6E-36 1.9E-40 255.4 11.1 122 28-157 44-218 (286)
3 PLN00171 photosystem light-ha 100.0 3.4E-36 7.4E-41 261.1 7.9 135 23-157 95-256 (324)
4 PLN00098 light-harvesting comp 100.0 1.1E-32 2.4E-37 234.4 10.9 120 28-157 54-197 (267)
5 PLN00101 Photosystem I light-h 100.0 1.8E-32 3.9E-37 231.3 11.2 121 28-158 45-189 (250)
6 PLN00097 photosystem I light h 100.0 8.8E-32 1.9E-36 226.4 10.5 118 30-157 38-181 (244)
7 PLN00048 photosystem I light h 100.0 6.2E-31 1.3E-35 223.2 8.1 118 29-157 35-193 (262)
8 PLN00147 light-harvesting comp 100.0 3E-30 6.6E-35 218.0 10.1 115 25-142 34-152 (252)
9 PLN00099 light-harvesting comp 100.0 3.6E-30 7.7E-35 216.6 10.2 119 31-156 39-169 (243)
10 PLN00170 photosystem II light- 100.0 5.9E-30 1.3E-34 216.5 10.8 105 33-142 48-160 (255)
11 PLN00100 light-harvesting comp 100.0 2.3E-29 4.9E-34 212.0 10.9 112 21-142 20-135 (246)
12 PF00504 Chloroa_b-bind: Chlor 99.9 7.3E-24 1.6E-28 164.7 8.0 110 47-157 1-116 (156)
13 PLN00089 fucoxanthin-chlorophy 99.8 1.4E-19 3.1E-24 149.5 8.2 92 46-139 45-141 (209)
14 PLN00120 fucoxanthin-chlorophy 99.6 1.6E-15 3.4E-20 124.9 7.6 87 55-142 42-137 (202)
15 PLN00147 light-harvesting comp 99.5 1.7E-14 3.8E-19 122.3 4.1 51 48-98 172-222 (252)
16 PLN00048 photosystem I light h 99.4 5.3E-14 1.1E-18 120.0 3.5 46 53-98 187-232 (262)
17 PLN00089 fucoxanthin-chlorophy 99.4 1E-13 2.2E-18 114.8 3.6 46 53-98 153-199 (209)
18 PLN00025 photosystem II light 99.4 2.7E-13 5.8E-18 115.7 3.8 46 52-98 183-228 (262)
19 PF00504 Chloroa_b-bind: Chlor 99.4 1.9E-13 4.2E-18 106.2 2.4 48 50-97 107-154 (156)
20 PLN00187 photosystem II light- 99.4 3E-13 6.5E-18 116.6 3.6 47 52-98 211-257 (286)
21 PLN00099 light-harvesting comp 99.3 5.2E-13 1.1E-17 112.8 3.9 45 53-98 164-208 (243)
22 PLN00098 light-harvesting comp 99.3 1.7E-12 3.6E-17 111.1 4.1 47 52-98 190-237 (267)
23 PLN00171 photosystem light-ha 99.3 3.3E-12 7.1E-17 111.7 3.5 44 55-98 252-295 (324)
24 PLN00170 photosystem II light- 99.2 6.5E-12 1.4E-16 106.9 3.7 45 54-98 190-243 (255)
25 PLN00097 photosystem I light h 99.2 9.9E-12 2.2E-16 105.2 4.2 43 55-98 177-219 (244)
26 PLN00120 fucoxanthin-chlorophy 99.1 4.4E-11 9.5E-16 98.6 3.6 46 53-98 142-190 (202)
27 PLN00100 light-harvesting comp 99.1 4.2E-11 9E-16 101.6 3.0 40 54-98 143-182 (246)
28 PLN00101 Photosystem I light-h 99.0 1.3E-10 2.8E-15 98.8 3.3 40 54-98 183-222 (250)
29 PHA02337 putative high light i 96.8 0.0005 1.1E-08 42.7 1.1 21 77-97 3-23 (35)
30 PLN00014 light-harvesting-like 95.1 0.0092 2E-07 51.0 1.3 22 76-97 159-180 (250)
31 PLN00084 photosystem II subuni 89.8 0.13 2.9E-06 42.5 0.9 24 72-95 131-154 (214)
32 PHA00649 hypothetical protein 24.1 62 0.0013 23.4 1.9 30 68-98 31-67 (83)
No 1
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=8.9e-42 Score=289.33 Aligned_cols=145 Identities=70% Similarity=1.164 Sum_probs=124.3
Q ss_pred cccccccccCCCCCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhh
Q 040587 11 GCITMRKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLG 90 (159)
Q Consensus 11 ~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla 90 (159)
+|+++|+++++++ .+.+.||++||++|++|++.++|+||||++||||||||+||++|+++++|||++||+||||||||
T Consensus 28 ~~~~~~~~~~~~~--~~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa 105 (262)
T PLN00025 28 GRVTMRKTVAKAA--GSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLG 105 (262)
T ss_pred cchhhchhhcccc--cccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHH
Confidence 5777777533332 24678999999999998877899999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCc-----------ccc-------cCCCcCcCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 040587 91 VLCCFKAGA-----------QIF-------SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPL 152 (159)
Q Consensus 91 ~~G~~~~g~-----------~~f-------~~g~l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~gp~g~~~D~~ 152 (159)
++|+++++. .|| ..++++|++++.++|+|++.+++++|+++||++|.+|++++|.++..|+.
T Consensus 106 ~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~ 185 (262)
T PLN00025 106 ALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPL 185 (262)
T ss_pred HhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCc
Confidence 999975431 133 34457899999888989999999999999999999999988888888999
Q ss_pred CCCCc
Q 040587 153 SLSWW 157 (159)
Q Consensus 153 YPGg~ 157 (159)
|||+.
T Consensus 186 yPG~~ 190 (262)
T PLN00025 186 YPGGS 190 (262)
T ss_pred CCccc
Confidence 99975
No 2
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=8.6e-36 Score=255.36 Aligned_cols=122 Identities=30% Similarity=0.419 Sum_probs=100.9
Q ss_pred CCCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHH-----------------------------------
Q 040587 28 GSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI----------------------------------- 72 (159)
Q Consensus 28 ~~~~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~----------------------------------- 72 (159)
.+++|+++|++|++. .++|+||||++||||||||+||++|||.
T Consensus 44 ~~~~~~~~r~~w~p~--~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (286)
T PLN00187 44 KSSKVGADRPLWFPG--AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPF 121 (286)
T ss_pred CccCCCCCccccCCC--CCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhccccccccccccccccccccc
Confidence 567999999999963 3899999999999999999999999986
Q ss_pred --------HHHHHHHHHhhhchhhhhhhhhhhcC----cccccCCCc------CcCCCCchhhhhHHHHHHHHHHHHHHH
Q 040587 73 --------FAKNRELKVIHARWAMLGVLCCFKAG----AQIFSEGGL------DYLENPSLIHAQSILAVWAIQVILMGA 134 (159)
Q Consensus 73 --------~~~~r~~El~hGR~AMla~~G~~~~g----~~~f~~g~l------~ylg~p~~~~a~~i~~l~~~qv~lmG~ 134 (159)
++||||+||+||||||||++||++++ ..||.++.. +|++++..+ ++.+++++|+++||+
T Consensus 122 ~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~G~~W~~aG~~~~~~g~~y~g~~~p~---~~~~l~~iqvllmG~ 198 (286)
T PLN00187 122 QPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDAGKVELVDGSSYLGQPLPF---SITTLIWIEVLVIGY 198 (286)
T ss_pred CcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhccCCcccccccccccccccccccccch---hHHHHHHHHHHHHHH
Confidence 69999999999999999999997654 356766543 355555322 467889999999999
Q ss_pred HHhhccCCCCCCCCCCCCCCCCc
Q 040587 135 VGGYGTAGGPLGEVTDPLSLSWW 157 (159)
Q Consensus 135 ~E~~R~~~gp~g~~~D~~YPGg~ 157 (159)
+|.+|+.+. +..|+.|||+.
T Consensus 199 ~E~~R~~~~---~~~~~~yPGg~ 218 (286)
T PLN00187 199 IEFQRNAEL---DPEKRLYPGGK 218 (286)
T ss_pred HHhhhccCC---CCCCCCCCccc
Confidence 999998752 23588999973
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=3.4e-36 Score=261.13 Aligned_cols=135 Identities=36% Similarity=0.538 Sum_probs=109.3
Q ss_pred CCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcCc---
Q 040587 23 KPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGA--- 99 (159)
Q Consensus 23 ~~~~~~~~~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g~--- 99 (159)
.+++..+.||+++|++|+|+.+.++|+||||++||||||||+||++|+++++|||++|||||||||||++|+++++.
T Consensus 95 ~~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~ 174 (324)
T PLN00171 95 QKARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDL 174 (324)
T ss_pred HhhcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhcc
Confidence 56777889999999999988766899999999999999999999999999999999999999999999999986543
Q ss_pred ---------ccccCCC-------cCcCCCCchh--hhhHHHHHHHHHHHHHHHHHhhccCC----CCCC--CCCCCCCCC
Q 040587 100 ---------QIFSEGG-------LDYLENPSLI--HAQSILAVWAIQVILMGAVGGYGTAG----GPLG--EVTDPLSLS 155 (159)
Q Consensus 100 ---------~~f~~g~-------l~ylg~p~~~--~a~~i~~l~~~qv~lmG~~E~~R~~~----gp~g--~~~D~~YPG 155 (159)
.||.++. ++|++.|... +.|.+.+++++|+++|+++|++|+.+ ++.+ ..+|..|||
T Consensus 175 ~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gYPG 254 (324)
T PLN00171 175 FGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPG 254 (324)
T ss_pred CCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccCCc
Confidence 1333332 3455555321 23667789999999999999999876 2222 356899999
Q ss_pred Cc
Q 040587 156 WW 157 (159)
Q Consensus 156 g~ 157 (159)
|.
T Consensus 255 G~ 256 (324)
T PLN00171 255 GA 256 (324)
T ss_pred cc
Confidence 74
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.98 E-value=1.1e-32 Score=234.36 Aligned_cols=120 Identities=28% Similarity=0.493 Sum_probs=95.8
Q ss_pred CCCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcCc--------
Q 040587 28 GSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGA-------- 99 (159)
Q Consensus 28 ~~~~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g~-------- 99 (159)
...+|+++|++|+|. .++|+||||++||||||||++|++|+++++|||++|||||||||||++|+++++.
T Consensus 54 ~~~~~~~~r~~w~Pg--~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 54 VCEPLPPDRPLWFPG--SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred ccccCCCCccccCCC--CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 446899999999964 3899999999999999999999999999999999999999999999999987553
Q ss_pred --ccccCCCcCcCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCC--CCC--C----------CCCCCCCCCCc
Q 040587 100 --QIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG--GPL--G----------EVTDPLSLSWW 157 (159)
Q Consensus 100 --~~f~~g~l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~--gp~--g----------~~~D~~YPGg~ 157 (159)
.||.++..+|++++ .+++++|+++||++|++|+++ .|. + ...|+.|||+.
T Consensus 132 ~~~w~~Ag~~~~~~~~--------~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~ 197 (267)
T PLN00098 132 NFSWYDAGAREYFADP--------TTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGL 197 (267)
T ss_pred ccccccccchhhccCc--------hHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCc
Confidence 23444444444433 356788999999999999865 121 1 12367899975
No 5
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.98 E-value=1.8e-32 Score=231.32 Aligned_cols=121 Identities=25% Similarity=0.334 Sum_probs=97.1
Q ss_pred CCCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcCc--------
Q 040587 28 GSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGA-------- 99 (159)
Q Consensus 28 ~~~~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g~-------- 99 (159)
.+.++.++|++|++ + .++|+||||++||||||||+||++|+++++|||++||+||||||||++|+++++.
T Consensus 45 ~~~~~~~~r~~W~P-~-~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~ 122 (250)
T PLN00101 45 RSFKVEAKKGEWLP-G-LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122 (250)
T ss_pred ccccccccccccCC-C-CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcC
Confidence 45788999999995 4 3899999999999999999999999999999999999999999999999976543
Q ss_pred --ccccCCCcCcCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCC--CCCC------------CCCCCCCCCCcC
Q 040587 100 --QIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG--GPLG------------EVTDPLSLSWWQ 158 (159)
Q Consensus 100 --~~f~~g~l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~--gp~g------------~~~D~~YPGg~~ 158 (159)
.|+..+..+|++.+ .+++++|+++||++|++|+++ .|.+ +..|+.||||.+
T Consensus 123 ~p~w~~ag~~~~~~~~--------~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~F 189 (250)
T PLN00101 123 APQWYDAGKAEYFASS--------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIF 189 (250)
T ss_pred CCccccccchhhcccc--------hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCCCcc
Confidence 24444444444322 467889999999999999875 2321 134788999853
No 6
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.97 E-value=8.8e-32 Score=226.44 Aligned_cols=118 Identities=27% Similarity=0.354 Sum_probs=93.0
Q ss_pred CccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcCc----------
Q 040587 30 QWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGA---------- 99 (159)
Q Consensus 30 ~~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g~---------- 99 (159)
.-.+++|++|+|. .++|+||||++||||||||++|++|+++++|||++||+||||||||++|+++++.
T Consensus 38 ~~~~~~R~~w~Pg--~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p 115 (244)
T PLN00097 38 VAAAADRPTWLPG--KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLP 115 (244)
T ss_pred cccCCCCcccCCC--CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCC
Confidence 3456899999963 3899999999999999999999999999999999999999999999999986543
Q ss_pred ccccCCCcC-cCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCC--CCC-------------CCCCCCCCCCCc
Q 040587 100 QIFSEGGLD-YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG--GPL-------------GEVTDPLSLSWW 157 (159)
Q Consensus 100 ~~f~~g~l~-ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~--gp~-------------g~~~D~~YPGg~ 157 (159)
.||.++..+ |+. ...+++.+|+++||++|++|+++ .|. .+..|+.||||.
T Consensus 116 ~W~~Ag~~~~~~~--------~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~ 181 (244)
T PLN00097 116 NWIDAAKWDGYWA--------GAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGL 181 (244)
T ss_pred ccccCCcchhccc--------cchhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCC
Confidence 234443332 221 12467889999999999999875 221 123577899975
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.97 E-value=6.2e-31 Score=223.24 Aligned_cols=118 Identities=29% Similarity=0.423 Sum_probs=89.9
Q ss_pred CCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHH------HHHHHHHHHHhhhchhhhhhhhhhhcCc---
Q 040587 29 SQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPE------IFAKNRELKVIHARWAMLGVLCCFKAGA--- 99 (159)
Q Consensus 29 ~~~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~------~~~~~r~~El~hGR~AMla~~G~~~~g~--- 99 (159)
...++++|++|++. .++|+||||++||||||||+||+ |++ +.+++|++||+||||||||++||++++.
T Consensus 35 ~~~~~~~r~~w~p~--~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~ 111 (262)
T PLN00048 35 PAKQGADRQLWFAS--KQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGK 111 (262)
T ss_pred CCCCCCCCceecCC--CCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhcc
Confidence 45779999999953 48999999999999999999997 333 5789999999999999999999976542
Q ss_pred ----------ccccCCC------cCcCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCC--CCC--C------------C
Q 040587 100 ----------QIFSEGG------LDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG--GPL--G------------E 147 (159)
Q Consensus 100 ----------~~f~~g~------l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~--gp~--g------------~ 147 (159)
.||.++. .+|++++ .+++++|+++||++|++|+++ .|. + .
T Consensus 112 ~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p--------~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~ 183 (262)
T PLN00048 112 AGLIPQETALPWFQSGVIPPAGTYDYWADP--------YTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGG 183 (262)
T ss_pred CCccccccccccccccccccccccccccch--------hHHHHHHHHHhhheeeeccccccCCCcccccccccchhcccc
Confidence 1333332 2233322 367889999999999999876 221 1 1
Q ss_pred CCCCCCCCCc
Q 040587 148 VTDPLSLSWW 157 (159)
Q Consensus 148 ~~D~~YPGg~ 157 (159)
..|+.|||+.
T Consensus 184 ~~d~~yPG~~ 193 (262)
T PLN00048 184 SGNPAYPGGP 193 (262)
T ss_pred cccccccccc
Confidence 2378999974
No 8
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.96 E-value=3e-30 Score=218.01 Aligned_cols=115 Identities=23% Similarity=0.329 Sum_probs=87.6
Q ss_pred CCCCCCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcCcccccC
Q 040587 25 VSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSE 104 (159)
Q Consensus 25 ~~~~~~~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g~~~f~~ 104 (159)
+......++++|++|+|.. ++|+||||++||||||||++|++|++++++||++|||||||||||++|+++++..-+.
T Consensus 34 ~~~~~~~~~~~R~~wlP~~--~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~- 110 (252)
T PLN00147 34 SGGINPVVAQERPTWLPGL--DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVT- 110 (252)
T ss_pred cccCcccCCCCccccCCCC--CCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccC-
Confidence 3334568899999999643 8999999999999999999999999999999999999999999999999876542111
Q ss_pred CCc---C-cCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 040587 105 GGL---D-YLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG 142 (159)
Q Consensus 105 g~l---~-ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~ 142 (159)
+.+ . |......++..+.++++++|+++||++|.+|+.+
T Consensus 111 g~~~~p~w~~ag~~~~~~~~~~~~~~~q~~~mG~~E~~R~~~ 152 (252)
T PLN00147 111 GIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAETKRYMD 152 (252)
T ss_pred CCcCCcchhhcccchhccccchHHHHHHHHHHHHHHHHhhcc
Confidence 100 0 1111111222334678899999999999999754
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.96 E-value=3.6e-30 Score=216.62 Aligned_cols=119 Identities=25% Similarity=0.358 Sum_probs=93.9
Q ss_pred ccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcCc----ccccC--
Q 040587 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGA----QIFSE-- 104 (159)
Q Consensus 31 ~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g~----~~f~~-- 104 (159)
-...+|..|+| + .++|+||||++||||||||++|++++++++|||++|||||||||||++|+++++. .|+.+
T Consensus 39 ~~~~~~~~w~P-~-~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~ 116 (243)
T PLN00099 39 SRVTMSADWMP-G-QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 116 (243)
T ss_pred ccccccccccC-C-CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccc
Confidence 45677889995 4 3899999999999999999999999999999999999999999999999988654 23332
Q ss_pred ------CCcCcCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 040587 105 ------GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPLSLSW 156 (159)
Q Consensus 105 ------g~l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~gp~g~~~D~~YPGg 156 (159)
+..+|++++. ....+++++++|+++||++|.+|+... +..+..|||+
T Consensus 117 ~~~~~~g~~~~~g~~~--~~~~l~~~~~iqvl~ig~~E~~r~~~~---~~~~~~yPGd 169 (243)
T PLN00099 117 WAAIPGGQATYLGNPV--PWGTLPTILAIEFLAIAFVEHQRSMEK---DPEKKKYPGG 169 (243)
T ss_pred hhccCcchhhhccCcc--chhhHHHHHHHHHHHHHHHHHHhhccC---CCCCCcCCCC
Confidence 2334555543 234577889999999999999997542 1235679996
No 10
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.96 E-value=5.9e-30 Score=216.53 Aligned_cols=105 Identities=30% Similarity=0.486 Sum_probs=85.5
Q ss_pred CCCCccccCCCC----CCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhc----CcccccC
Q 040587 33 GPDRVKYLDPLS----GGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKA----GAQIFSE 104 (159)
Q Consensus 33 ~~~r~~~~~~~~----~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~----g~~~f~~ 104 (159)
..+|.+|++... ..+|+||||++||||||||++|++|++++++||++||+||||||||++||+++ +..||.+
T Consensus 48 ~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~a 127 (255)
T PLN00170 48 AQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA 127 (255)
T ss_pred cCCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhhC
Confidence 467889996431 24799999999999999999999999999999999999999999999999754 4467776
Q ss_pred CCcCcCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 040587 105 GGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG 142 (159)
Q Consensus 105 g~l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~ 142 (159)
+...+. +...++.+++++|+++||++|.+|+++
T Consensus 128 G~~~~~-----~~p~~~~~l~~~q~~lmg~~E~~R~~~ 160 (255)
T PLN00170 128 GADPGA-----IAPFSFGSLLGTQLLLMGWVESKRWVD 160 (255)
T ss_pred Cccccc-----cCccchHHHHHHHHHHhhhhhheeecc
Confidence 643221 111245688999999999999999876
No 11
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.96 E-value=2.3e-29 Score=212.03 Aligned_cols=112 Identities=25% Similarity=0.394 Sum_probs=89.3
Q ss_pred CCCCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcCcc
Q 040587 21 KPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQ 100 (159)
Q Consensus 21 ~~~~~~~~~~~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g~~ 100 (159)
|+...++...--..+|++|++ +. ++|+||||++||||||||++|++|+++++++|++|||||||||||++|+++++..
T Consensus 20 ~~~~~~~~~~~~~~~r~~W~P-~~-~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~ 97 (246)
T PLN00100 20 VSTTRRPRVRVAARARPMWYP-GA-TAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAV 97 (246)
T ss_pred cccccccccccccCCCcccCC-CC-CCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHh
Confidence 333344444556788999995 43 8999999999999999999999999999999999999999999999999887642
Q ss_pred ----cccCCCcCcCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 040587 101 ----IFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG 142 (159)
Q Consensus 101 ----~f~~g~l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~ 142 (159)
|+.++...|. .++++++++|+++||++|.+|+.+
T Consensus 98 ~~P~w~~ag~~~~~--------~~~~~l~~iqill~g~~E~~r~~~ 135 (246)
T PLN00100 98 GLPKFWEAGAEKYG--------LDLQTLVLIQVVVMAVLEAARYRG 135 (246)
T ss_pred cccchhhcchhhhc--------cchhHHHHHHHHHHHHHhhhcccc
Confidence 3333332221 123577889999999999999876
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.90 E-value=7.3e-24 Score=164.72 Aligned_cols=110 Identities=33% Similarity=0.450 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcCcccccCCCcCcCCCCchhhhh--HHH-H
Q 040587 47 APFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLENPSLIHAQ--SIL-A 123 (159)
Q Consensus 47 ~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g~~~f~~g~l~ylg~p~~~~a~--~i~-~ 123 (159)
+|++|||+++||+||||++|++++ +++|+|++||||||+||||++|+++++...-.++...+.+.+...++. +++ .
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGGIPVPAA 79 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTSSSSHSH
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhhhhhhhH
Confidence 589999999999999999999888 899999999999999999999998865421111111111222111111 133 3
Q ss_pred HHHHHHHHHHHHHhhccCCCCCC---CCCCCCCCCCc
Q 040587 124 VWAIQVILMGAVGGYGTAGGPLG---EVTDPLSLSWW 157 (159)
Q Consensus 124 l~~~qv~lmG~~E~~R~~~gp~g---~~~D~~YPGg~ 157 (159)
.++..+++||++|.+|....+.. ...+..|||..
T Consensus 80 ~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~ 116 (156)
T PF00504_consen 80 GWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDL 116 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSS
T ss_pred HHHHHHHHHhHhhhhhcccccCCcccccccccCcccc
Confidence 45566778999999987653211 13467888863
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.80 E-value=1.4e-19 Score=149.53 Aligned_cols=92 Identities=25% Similarity=0.296 Sum_probs=66.6
Q ss_pred CCCCCCCCCCCCCCCCCccccCC-CHHHHHHHHHHHHhhhchhhhhhhhhhhcCcccccCCCc-CcCCCCchhhh-hHHH
Q 040587 46 GAPFYLTGEFPGDYGWDTACLSA-DPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGL-DYLENPSLIHA-QSIL 122 (159)
Q Consensus 46 ~~p~~l~G~~pGd~gfDPlgl~~-~~~~~~~~r~~El~hGR~AMla~~G~~~~g~~~f~~g~l-~ylg~p~~~~a-~~i~ 122 (159)
..|..|+|+ .||++|||+||++ ++++++|+|++|||||||||||++|+++++...++ +.+ ++.+.+..+++ +.++
T Consensus 45 ~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~p-G~~~~~~~~p~~~~a~~~~~ 122 (209)
T PLN00089 45 AKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIP-GEAYSFAAIPKTIDAHDALL 122 (209)
T ss_pred cCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CccccccccccHHHHHHhhc
Confidence 335579999 9999999999984 67889999999999999999999999987653232 222 33344544433 2333
Q ss_pred HH-HHHHHH-HHHHHHhhc
Q 040587 123 AV-WAIQVI-LMGAVGGYG 139 (159)
Q Consensus 123 ~l-~~~qv~-lmG~~E~~R 139 (159)
.. +++|++ +||++|...
T Consensus 123 ~~g~~~Qi~~~ig~~E~~~ 141 (209)
T PLN00089 123 KSGAMIQIFAWIGFVDLAV 141 (209)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 33 356776 699999653
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.61 E-value=1.6e-15 Score=124.90 Aligned_cols=87 Identities=25% Similarity=0.337 Sum_probs=60.9
Q ss_pred CCCCCCCCccccC--CCHHHHHHHHHHHHhhhchhhhhhhhhhhcCcccccCCCcCcCC-----CCchhhh-hHHHHHHH
Q 040587 55 FPGDYGWDTACLS--ADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQIFSEGGLDYLE-----NPSLIHA-QSILAVWA 126 (159)
Q Consensus 55 ~pGd~gfDPlgl~--~~~~~~~~~r~~El~hGR~AMla~~G~~~~g~~~f~~g~l~ylg-----~p~~~~a-~~i~~l~~ 126 (159)
-|..+ |||++|+ .|+++++++|++|||||||||||++|++++...+..++.+++.+ .|..+.+ +.++...+
T Consensus 42 ~p~g~-fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~ 120 (202)
T PLN00120 42 APLGF-FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGL 120 (202)
T ss_pred CCCCC-CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHH
Confidence 34444 9999996 58999999999999999999999999998765222233333222 2222222 44566667
Q ss_pred HHHH-HHHHHHhhccCC
Q 040587 127 IQVI-LMGAVGGYGTAG 142 (159)
Q Consensus 127 ~qv~-lmG~~E~~R~~~ 142 (159)
+|++ +||++|.++...
T Consensus 121 ~qi~~~ig~~E~~~~~~ 137 (202)
T PLN00120 121 LQILAFIGFLELAVMKD 137 (202)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 7865 699999876543
No 15
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.49 E-value=1.7e-14 Score=122.34 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 48 PFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 48 p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
+..+++.+|||++|||+||++|++++++++.+||+||||||+|++|++++.
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~ 222 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQA 222 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445667799999999999999999999999999999999999999998754
No 16
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.44 E-value=5.3e-14 Score=119.98 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=43.2
Q ss_pred CCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 53 GEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 53 G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
..+|||++|||+||++|+|+++++|++||+||||||+|++||+++.
T Consensus 187 ~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~ 232 (262)
T PLN00048 187 PAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQA 232 (262)
T ss_pred cccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhh
Confidence 3599999999999999999999999999999999999999998754
No 17
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.41 E-value=1e-13 Score=114.77 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=42.3
Q ss_pred CCCCCCCCCCcccc-CCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 53 GEFPGDYGWDTACL-SADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 53 G~~pGd~gfDPlgl-~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
+++|||+||||++| .+|+++++++|.+||+||||||+|++|++..+
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~ 199 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGS 199 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 46899999999999 47999999999999999999999999998754
No 18
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.38 E-value=2.7e-13 Score=115.71 Aligned_cols=46 Identities=26% Similarity=0.488 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 52 TGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 52 ~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
|..+|||+ |||+||++|+++++++|.+||+||||||+|++|++++.
T Consensus 183 d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~ 228 (262)
T PLN00025 183 DPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 228 (262)
T ss_pred cCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Confidence 55799999 99999999999999999999999999999999998654
No 19
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.37 E-value=1.9e-13 Score=106.22 Aligned_cols=48 Identities=29% Similarity=0.395 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhc
Q 040587 50 YLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKA 97 (159)
Q Consensus 50 ~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~ 97 (159)
..++.+|||++|||+++.+|++..++++.+||+|||+||+|++|++++
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~ 154 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQ 154 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467789999999999999999999999999999999999999999864
No 20
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.37 E-value=3e-13 Score=116.62 Aligned_cols=47 Identities=30% Similarity=0.338 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 52 TGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 52 ~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
+..+|||++|||+||++|+++++++|++||+||||||+|++||+++.
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~ 257 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQA 257 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999998754
No 21
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.35 E-value=5.2e-13 Score=112.85 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=41.9
Q ss_pred CCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 53 GEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 53 G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
..+||| +|||+||++|+++++++|.+||||||+||+|++|++++.
T Consensus 164 ~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~ 208 (243)
T PLN00099 164 KKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQ 208 (243)
T ss_pred CcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 469999 899999999999999999999999999999999998754
No 22
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.30 E-value=1.7e-12 Score=111.12 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCccccC-CCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 52 TGEFPGDYGWDTACLS-ADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 52 ~G~~pGd~gfDPlgl~-~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
|..+|||++|||++|. +|+++++++|.+||+|||+||+|++|++++.
T Consensus 190 d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~ 237 (267)
T PLN00098 190 DVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQA 237 (267)
T ss_pred CCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3468999999999996 5999999999999999999999999998653
No 23
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.25 E-value=3.3e-12 Score=111.75 Aligned_cols=44 Identities=27% Similarity=0.421 Sum_probs=39.7
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 55 FPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 55 ~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
+||+++|||+||++|+++++++|.+||+||||||+|++|++++.
T Consensus 252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~ 295 (324)
T PLN00171 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA 295 (324)
T ss_pred CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 45555699999999999999999999999999999999998754
No 24
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.22 E-value=6.5e-12 Score=106.89 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=40.9
Q ss_pred CCCCCCCCCccccCC---------CHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 54 EFPGDYGWDTACLSA---------DPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 54 ~~pGd~gfDPlgl~~---------~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
-+||+..|||++|++ |+++++++|.+||||||+||+|++|++++.
T Consensus 190 ~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa 243 (255)
T PLN00170 190 GYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA 243 (255)
T ss_pred ccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee
Confidence 389987799999985 899999999999999999999999998753
No 25
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.21 E-value=9.9e-12 Score=105.21 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=38.5
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 55 FPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 55 ~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
|||.. |||+||++|+++++++|.+||||||+||+|++|++.+.
T Consensus 177 YPgg~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~ 219 (244)
T PLN00097 177 YPKGL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQA 219 (244)
T ss_pred CCCCC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Confidence 55543 99999999999999999999999999999999998643
No 26
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.11 E-value=4.4e-11 Score=98.65 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=35.5
Q ss_pred CCCCCCCCCC--ccccC-CCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 53 GEFPGDYGWD--TACLS-ADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 53 G~~pGd~gfD--Plgl~-~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
+++||||+++ ++||. .|+++.+++|.+||+|||+||+|++|++...
T Consensus 142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe 190 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHE 190 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788854322 33332 2789999999999999999999999998754
No 27
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.10 E-value=4.2e-11 Score=101.56 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=34.9
Q ss_pred CCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 54 EFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 54 ~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
..||||+|||+||++ +++|.+||+|||+||+|++|++++.
T Consensus 143 ~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~ 182 (246)
T PLN00100 143 GVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQY 182 (246)
T ss_pred CCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhh
Confidence 468999999999963 5788999999999999999997643
No 28
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.03 E-value=1.3e-10 Score=98.78 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=33.9
Q ss_pred CCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 54 EFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 54 ~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
.+||+. ||||||+++ ++++.+||||||+||+|++|++++.
T Consensus 183 ~YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~ 222 (250)
T PLN00101 183 GYPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQH 222 (250)
T ss_pred cCCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhhee
Confidence 377775 999999875 3778999999999999999997643
No 29
>PHA02337 putative high light inducible protein
Probab=96.82 E-value=0.0005 Score=42.74 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=17.8
Q ss_pred HHHHHhhhchhhhhhhhhhhc
Q 040587 77 RELKVIHARWAMLGVLCCFKA 97 (159)
Q Consensus 77 r~~El~hGR~AMla~~G~~~~ 97 (159)
..+|..|||+||+|++-.+.+
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~ 23 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGA 23 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHH
Confidence 368999999999999887653
No 30
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.13 E-value=0.0092 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.4
Q ss_pred HHHHHHhhhchhhhhhhhhhhc
Q 040587 76 NRELKVIHARWAMLGVLCCFKA 97 (159)
Q Consensus 76 ~r~~El~hGR~AMla~~G~~~~ 97 (159)
+.++|++|||+||+|++-.+..
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~ 180 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLV 180 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHH
Confidence 3568999999999999988653
No 31
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=89.84 E-value=0.13 Score=42.54 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhchhhhhhhhhh
Q 040587 72 IFAKNRELKVIHARWAMLGVLCCF 95 (159)
Q Consensus 72 ~~~~~r~~El~hGR~AMla~~G~~ 95 (159)
..+..+..|+.|||+||||++-.+
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~al 154 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAI 154 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHH
Confidence 455667789999999999876554
No 32
>PHA00649 hypothetical protein
Probab=24.13 E-value=62 Score=23.36 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHhhhch-------hhhhhhhhhhcC
Q 040587 68 ADPEIFAKNRELKVIHARW-------AMLGVLCCFKAG 98 (159)
Q Consensus 68 ~~~~~~~~~r~~El~hGR~-------AMla~~G~~~~g 98 (159)
.+|++.+.+| ..+.|+|- .||+++|.++.+
T Consensus 31 ~~P~~VEEFr-~D~~~~Rr~RKA~D~G~L~~VGL~~~~ 67 (83)
T PHA00649 31 DVPEQVEEFR-EDLRFGRRMRKAADHGFLALVGLVAVA 67 (83)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 5788888777 46777763 578888887643
Done!