Query 040587
Match_columns 159
No_of_seqs 172 out of 810
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 15:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 3.4E-43 1.2E-47 291.9 8.4 142 16-157 1-160 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 1.7E-34 6E-39 241.5 3.6 120 30-157 5-177 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 5.6E-32 1.9E-36 229.0 2.1 118 30-157 58-199 (269)
4 2wsc_4 Chlorophyll A-B binding 100.0 1.2E-31 4.1E-36 225.0 -2.8 119 29-157 45-188 (251)
5 2wsc_3 LHCA3, type II chloroph 100.0 1.8E-30 6.3E-35 220.4 2.3 116 31-157 51-207 (276)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 5.6E-29 1.9E-33 207.9 7.8 115 36-157 45-171 (241)
7 3pl9_A Chlorophyll A-B binding 99.3 4.8E-13 1.6E-17 111.9 2.2 44 54-98 172-215 (243)
8 2wsc_3 LHCA3, type II chloroph 99.3 2.6E-13 8.8E-18 115.2 0.1 47 52-98 200-246 (276)
9 2bhw_A Chlorophyll A-B binding 99.3 1.5E-12 5.2E-17 107.9 4.0 47 51-98 152-198 (232)
10 2wsc_2 LHCA2, type II chloroph 99.2 1.7E-12 5.8E-17 109.9 -0.4 46 52-97 192-238 (269)
11 2wsc_1 AT3G54890, LHCA1; photo 99.2 2.4E-12 8.1E-17 107.5 -0.6 46 52-98 164-209 (241)
12 2wsc_4 Chlorophyll A-B binding 98.8 6.5E-10 2.2E-14 93.1 -0.8 38 54-97 183-220 (251)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=3.4e-43 Score=291.91 Aligned_cols=142 Identities=72% Similarity=1.158 Sum_probs=117.1
Q ss_pred ccccCCCCCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhh
Q 040587 16 RKTAGKPKPVSSGSQWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCF 95 (159)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~ 95 (159)
||+++++++++++++||++||++|+++++.+.|+||||++||||||||+||++|+|+++|||++|||||||||||++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~l 80 (232)
T 2bhw_A 1 RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSV 80 (232)
T ss_dssp ---------CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhh
Confidence 57778888888899999999999999887789999999999999999999999999999999999999999999999997
Q ss_pred hcCc-----------ccc-------cCCCcCcCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCc
Q 040587 96 KAGA-----------QIF-------SEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPLSLSWW 157 (159)
Q Consensus 96 ~~g~-----------~~f-------~~g~l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~gp~g~~~D~~YPGg~ 157 (159)
+++. .|+ ..++++|+++|...++|.+.+++++|+++||++|.+|++++|.++..|+.|||+.
T Consensus 81 v~E~l~~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~ 160 (232)
T 2bhw_A 81 FPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGS 160 (232)
T ss_dssp HHHHHHTTTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTT
T ss_pred hHHHhccCCcCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcc
Confidence 6442 122 2334567777877778888899999999999999999998888777899999974
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.7e-34 Score=241.46 Aligned_cols=120 Identities=28% Similarity=0.399 Sum_probs=61.7
Q ss_pred CccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHH-------------------------------------
Q 040587 30 QWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEI------------------------------------- 72 (159)
Q Consensus 30 ~~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~------------------------------------- 72 (159)
++++++|++|++. .++|+||||++||||||||+||++|||.
T Consensus 5 ~~~~~~r~~w~pg--~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (243)
T 3pl9_A 5 SGFSTDRPLWYPG--AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQP 82 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCC--CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccccc
Confidence 4667899999963 4899999999999999999999999873
Q ss_pred ------HHHHHHHHHhhhchhhhhhhhhhhcCc----ccccC------CCcCcCCCCchhhhhHHHHHHHHHHHHHHHHH
Q 040587 73 ------FAKNRELKVIHARWAMLGVLCCFKAGA----QIFSE------GGLDYLENPSLIHAQSILAVWAIQVILMGAVG 136 (159)
Q Consensus 73 ------~~~~r~~El~hGR~AMla~~G~~~~g~----~~f~~------g~l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E 136 (159)
++|||++|||||||||||++|+++++. .||.+ ++++|++++.. +++++++++|+++||++|
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~---~~i~~l~~~qv~lmG~~E 159 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLP---FSMTTLIWIEVLVIGYIE 159 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEEC---CCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccc---hhhHHHHHHHHHHHHHHH
Confidence 789999999999999999999987543 45543 24567776653 357788999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCc
Q 040587 137 GYGTAGGPLGEVTDPLSLSWW 157 (159)
Q Consensus 137 ~~R~~~gp~g~~~D~~YPGg~ 157 (159)
.+|+++-. ..++.|||+.
T Consensus 160 ~~R~~~~~---~~~~~~PG~~ 177 (243)
T 3pl9_A 160 FQRNAELD---TEKRLYPGGT 177 (243)
T ss_dssp HHHHSCCC---TTTTTCCCGG
T ss_pred HHhhcccC---CccccCCCcc
Confidence 99998622 2356899974
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.97 E-value=5.6e-32 Score=229.05 Aligned_cols=118 Identities=27% Similarity=0.499 Sum_probs=59.9
Q ss_pred CccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcCc----------
Q 040587 30 QWYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGA---------- 99 (159)
Q Consensus 30 ~~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g~---------- 99 (159)
.+|++||++|++. .++|+||||++||||||||+||++|+|+++|||++|||||||||||++|+++++.
T Consensus 58 ~~~~~~r~~wlpg--~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p 135 (269)
T 2wsc_2 58 TVAEPDRPLWFPG--STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTP 135 (269)
T ss_dssp --------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCC
T ss_pred cccCCCcccccCC--CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCc
Confidence 4799999999964 4899999999999999999999999999999999999999999999999986542
Q ss_pred ccccCCCcCcCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCC----CCCC----------CCCCCCCCCCc
Q 040587 100 QIFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG----GPLG----------EVTDPLSLSWW 157 (159)
Q Consensus 100 ~~f~~g~l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~----gp~g----------~~~D~~YPGg~ 157 (159)
.|+..+..+|+.++ ++++++|+++||++|.+|+++ |..+ +..|..|||+.
T Consensus 136 ~w~~aG~~~~~~~~--------~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~ 199 (269)
T 2wsc_2 136 SWYTAGEQEYFTDT--------TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGL 199 (269)
T ss_dssp CCCSTTSSSSCCCT--------TSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCS
T ss_pred cccccchhhhhcch--------HHHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCCCCc
Confidence 12333333333322 356788999999999999864 2221 23577899974
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.96 E-value=1.2e-31 Score=225.01 Aligned_cols=119 Identities=24% Similarity=0.364 Sum_probs=61.8
Q ss_pred CCccCC-CCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcCcc-------
Q 040587 29 SQWYGP-DRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGAQ------- 100 (159)
Q Consensus 29 ~~~~~~-~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g~~------- 100 (159)
..+|+| ||++|++. .++|.||||++||||||||+||++|+|+++++|++||+||||||||++|+++++..
T Consensus 45 ~~~~~~~~r~~~~pg--~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~ 122 (251)
T 2wsc_4 45 ASFKVEAKKGEWLPG--LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122 (251)
T ss_dssp --------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSC
T ss_pred ccccCcchhhhccCC--CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccC
Confidence 359999 89999964 38999999999999999999999999999999999999999999999999876531
Q ss_pred ---cccCCCcCcCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCC----CCCC----------CCCCCCCCCCc
Q 040587 101 ---IFSEGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG----GPLG----------EVTDPLSLSWW 157 (159)
Q Consensus 101 ---~f~~g~l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~----gp~g----------~~~D~~YPGg~ 157 (159)
|+.++..+|++++ ++++++|+++||++|.+|+.+ |+.+ +..|+.|||+.
T Consensus 123 ~p~w~~aG~~~~~~~~--------~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~ 188 (251)
T 2wsc_4 123 VPKWYAAGKEEYFASS--------STLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI 188 (251)
T ss_dssp CCCCSCCCSSSCSSCS--------SCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCT
T ss_pred CccccccchHhhhccc--------hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCCCCc
Confidence 3333444454433 345678899999999999753 3322 12245799974
No 5
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.96 E-value=1.8e-30 Score=220.43 Aligned_cols=116 Identities=27% Similarity=0.418 Sum_probs=57.3
Q ss_pred ccCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHH------HHHHHHHHhhhchhhhhhhhhhhcCcc----
Q 040587 31 WYGPDRVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIF------AKNRELKVIHARWAMLGVLCCFKAGAQ---- 100 (159)
Q Consensus 31 ~~~~~r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~------~~~r~~El~hGR~AMla~~G~~~~g~~---- 100 (159)
.||+||++|+| . .+.|+||||++||||||||+|| +|++++ +++|++||+||||||||++|++.++..
T Consensus 51 ~~g~~R~~wlP-~-~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g 127 (276)
T 2wsc_3 51 KQGSDRPLWFA-S-KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG 127 (276)
T ss_dssp -------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCC
T ss_pred ccCCCccccCC-C-CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccc
Confidence 39999999995 3 4899999999999999999999 688889 999999999999999999999875431
Q ss_pred ---------ccc------CCCcCcCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCC----CCCC------------CCC
Q 040587 101 ---------IFS------EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAG----GPLG------------EVT 149 (159)
Q Consensus 101 ---------~f~------~g~l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~----gp~g------------~~~ 149 (159)
|+. ++..+|++++ .+++++|+++||++|.+|+++ |+.+ +..
T Consensus 128 ~~~~~~p~~w~~~g~ip~aG~~~~~~~~--------~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~ 199 (276)
T 2wsc_3 128 LIPQETALPWFRTGFIPPAGTYNYWADS--------YTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSG 199 (276)
T ss_dssp CCCCSSCCSSSSCCCC-----CCCSCCC--------CSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCS
T ss_pred cccccCcchhhhhhcccchhHHHHhccc--------hHHHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccc
Confidence 221 1111222222 346788999999999999763 2221 245
Q ss_pred CCCCCCCc
Q 040587 150 DPLSLSWW 157 (159)
Q Consensus 150 D~~YPGg~ 157 (159)
|+.|||+.
T Consensus 200 d~~yPG~~ 207 (276)
T 2wsc_3 200 EPAYPGGP 207 (276)
T ss_dssp SCTTTSSS
T ss_pred cccCCCcc
Confidence 77899974
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.95 E-value=5.6e-29 Score=207.87 Aligned_cols=115 Identities=25% Similarity=0.394 Sum_probs=77.9
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcCc----ccc--------c
Q 040587 36 RVKYLDPLSGGAPFYLTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAGA----QIF--------S 103 (159)
Q Consensus 36 r~~~~~~~~~~~p~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g~----~~f--------~ 103 (159)
|..|++. .+.|+||+|++||||||||+||++|+|+++|||++|||||||||||++|+++++. .|+ +
T Consensus 45 ~~~w~P~--~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~ 122 (241)
T 2wsc_1 45 AAHWMPG--EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALP 122 (241)
T ss_dssp ------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCS
T ss_pred ccccCCC--CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccC
Confidence 5678853 3789999999999999999999999999999999999999999999999987654 122 2
Q ss_pred CCCcCcCCCCchhhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCc
Q 040587 104 EGGLDYLENPSLIHAQSILAVWAIQVILMGAVGGYGTAGGPLGEVTDPLSLSWW 157 (159)
Q Consensus 104 ~g~l~ylg~p~~~~a~~i~~l~~~qv~lmG~~E~~R~~~gp~g~~~D~~YPGg~ 157 (159)
.+..+|++++. +.+.+++++++|+++||++|.+|..+. +..|+.||||.
T Consensus 123 ~g~a~~~~~~~--~~~~~~~i~~iq~l~ig~~E~~r~~~~---~~~~~~yPgg~ 171 (241)
T 2wsc_1 123 GGQATYLGNPV--PWGTLPTILAIEFLAIAFVEHQRSMEK---DPEKKKYPGGA 171 (241)
T ss_dssp SCSSCCSSSCS--SSSSHHHHHHHHHHHTHHHHHHHTSCC---SSCCSSSCSCC
T ss_pred CcchhhhcCcc--hHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCCCCCCc
Confidence 23344555542 234677889999999999999998653 23466888864
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.30 E-value=4.8e-13 Score=111.91 Aligned_cols=44 Identities=32% Similarity=0.430 Sum_probs=41.3
Q ss_pred CCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 54 EFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 54 ~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
.+|||+ |||+||++|+++++++|++||+|||+||+|++|++++.
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~ 215 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQA 215 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 589999 99999999999999999999999999999999998653
No 8
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.29 E-value=2.6e-13 Score=115.25 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 52 TGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 52 ~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
|..+|||++|||++|++|+++++++|++||+|||+||+|++|++.++
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~ 246 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQA 246 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHH
Confidence 44689999999999998888899999999999999999999998754
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.28 E-value=1.5e-12 Score=107.87 Aligned_cols=47 Identities=28% Similarity=0.486 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 51 LTGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 51 l~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
.|..+|||+ |||++|++|+++++++|.+||+|||+||+|++|+++++
T Consensus 152 ~d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~ 198 (232)
T 2bhw_A 152 VDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 198 (232)
T ss_dssp SSSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHH
Confidence 345699999 99999999999999999999999999999999997654
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.18 E-value=1.7e-12 Score=109.88 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=41.4
Q ss_pred CCCCCCCCCCCccccC-CCHHHHHHHHHHHHhhhchhhhhhhhhhhc
Q 040587 52 TGEFPGDYGWDTACLS-ADPEIFAKNRELKVIHARWAMLGVLCCFKA 97 (159)
Q Consensus 52 ~G~~pGd~gfDPlgl~-~~~~~~~~~r~~El~hGR~AMla~~G~~~~ 97 (159)
|..+|||++|||+||+ .|+++++++|.+||+|||+||+|++|++.+
T Consensus 192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~ 238 (269)
T 2wsc_2 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQ 238 (269)
T ss_dssp SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHH
T ss_pred ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 4468999999999997 478889999999999999999999999754
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.16 E-value=2.4e-12 Score=107.49 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=42.0
Q ss_pred CCCCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhcC
Q 040587 52 TGEFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKAG 98 (159)
Q Consensus 52 ~G~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~g 98 (159)
++.+||| +|||+||++|+++++++|.+||+|||+||+|++|++.++
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~ 209 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQ 209 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGG
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhh
Confidence 4578999 599999999999999999999999999999999998765
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=98.76 E-value=6.5e-10 Score=93.14 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=34.0
Q ss_pred CCCCCCCCCccccCCCHHHHHHHHHHHHhhhchhhhhhhhhhhc
Q 040587 54 EFPGDYGWDTACLSADPEIFAKNRELKVIHARWAMLGVLCCFKA 97 (159)
Q Consensus 54 ~~pGd~gfDPlgl~~~~~~~~~~r~~El~hGR~AMla~~G~~~~ 97 (159)
.+|||+ |||+++.+ ++++|.+||+|||+ |+|++|++++
T Consensus 183 ~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQ 220 (251)
T 2wsc_4 183 GYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQ 220 (251)
T ss_dssp HSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHH
T ss_pred cCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHH
Confidence 489998 99999976 67789999999999 9999999764
Done!