Query 040588
Match_columns 252
No_of_seqs 264 out of 1900
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:50:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03767 NAD(P)H:quinone oxido 100.0 2.6E-36 5.7E-41 254.1 22.8 198 46-246 1-200 (200)
2 TIGR01755 flav_wrbA NAD(P)H:qu 100.0 2.3E-36 5E-41 253.8 22.2 196 47-244 1-197 (197)
3 KOG3135 1,4-benzoquinone reduc 100.0 1.6E-34 3.4E-39 228.7 19.7 201 46-247 1-203 (203)
4 COG0655 WrbA Multimeric flavod 100.0 3.6E-27 7.7E-32 199.5 18.1 195 47-245 1-206 (207)
5 PRK05569 flavodoxin; Provision 99.9 1.2E-25 2.6E-30 178.8 16.6 138 46-238 1-140 (141)
6 PRK06756 flavodoxin; Provision 99.9 2.7E-25 5.9E-30 178.4 16.3 146 46-241 1-147 (148)
7 PRK05568 flavodoxin; Provision 99.9 4.1E-25 8.9E-30 175.8 15.9 139 46-239 1-141 (142)
8 PRK06703 flavodoxin; Provision 99.9 1.5E-23 3.2E-28 168.8 15.9 148 46-244 1-150 (151)
9 PRK06242 flavodoxin; Provision 99.9 1.3E-23 2.9E-28 168.5 13.9 147 47-240 1-149 (150)
10 PRK11921 metallo-beta-lactamas 99.9 3.7E-23 8.1E-28 190.8 15.4 149 42-241 243-393 (394)
11 TIGR01753 flav_short flavodoxi 99.9 8.9E-23 1.9E-27 161.3 15.2 138 49-238 1-140 (140)
12 PRK05452 anaerobic nitric oxid 99.9 1.4E-22 3.1E-27 190.8 16.4 148 43-242 248-397 (479)
13 PRK07308 flavodoxin; Validated 99.9 4.6E-22 9.9E-27 159.3 15.6 144 46-240 1-145 (146)
14 PF03358 FMN_red: NADPH-depend 99.9 1.7E-22 3.6E-27 162.4 12.3 139 47-190 1-143 (152)
15 PRK10569 NAD(P)H-dependent FMN 99.8 5E-20 1.1E-24 153.9 16.1 171 47-243 1-174 (191)
16 PRK09267 flavodoxin FldA; Vali 99.8 1.3E-19 2.8E-24 148.5 17.8 157 46-239 1-165 (169)
17 COG0426 FpaA Uncharacterized f 99.8 7.5E-20 1.6E-24 165.2 13.4 147 42-239 242-388 (388)
18 PRK00170 azoreductase; Reviewe 99.8 1.3E-18 2.8E-23 146.0 13.2 141 46-188 1-170 (201)
19 TIGR03566 FMN_reduc_MsuE FMN r 99.8 2.2E-18 4.8E-23 141.9 14.1 169 48-242 1-172 (174)
20 TIGR03567 FMN_reduc_SsuE FMN r 99.8 2.9E-18 6.3E-23 140.9 14.1 167 48-239 1-170 (171)
21 PRK09271 flavodoxin; Provision 99.8 4.4E-18 9.5E-23 138.4 14.9 143 47-241 1-147 (160)
22 PRK01355 azoreductase; Reviewe 99.8 7.3E-18 1.6E-22 141.8 13.9 142 46-188 1-164 (199)
23 PRK12359 flavodoxin FldB; Prov 99.8 6.2E-17 1.3E-21 132.8 18.1 115 47-189 1-118 (172)
24 TIGR01752 flav_long flavodoxin 99.8 3E-17 6.4E-22 134.4 15.9 114 48-189 1-117 (167)
25 PRK09739 hypothetical protein; 99.7 3.5E-18 7.6E-23 143.6 8.9 117 45-164 2-132 (199)
26 TIGR01754 flav_RNR ribonucleot 99.7 7.3E-17 1.6E-21 128.3 13.1 108 47-181 1-112 (140)
27 PF12682 Flavodoxin_4: Flavodo 99.7 5.1E-17 1.1E-21 131.6 10.8 117 48-179 1-128 (156)
28 PRK07116 flavodoxin; Provision 99.7 1.3E-16 2.8E-21 129.7 10.3 121 45-178 1-130 (160)
29 TIGR02690 resist_ArsH arsenica 99.7 1.5E-15 3.3E-20 128.9 16.8 176 46-245 26-204 (219)
30 PRK06934 flavodoxin; Provision 99.7 1.4E-16 3E-21 135.2 10.4 123 44-179 33-184 (221)
31 PRK11104 hemG protoporphyrinog 99.7 1.4E-16 3E-21 131.7 10.0 88 47-162 1-88 (177)
32 PRK13556 azoreductase; Provisi 99.7 6E-16 1.3E-20 131.0 12.6 142 46-188 1-176 (208)
33 PRK09004 FMN-binding protein M 99.6 7E-15 1.5E-19 117.8 13.7 118 46-189 1-119 (146)
34 COG0716 FldA Flavodoxins [Ener 99.6 1.3E-14 2.9E-19 116.8 14.4 148 46-240 1-150 (151)
35 PF12724 Flavodoxin_5: Flavodo 99.6 2.2E-15 4.7E-20 120.3 9.0 87 50-164 1-87 (143)
36 PF12641 Flavodoxin_3: Flavodo 99.6 4.1E-14 9E-19 114.8 14.7 146 50-235 1-160 (160)
37 PF02525 Flavodoxin_2: Flavodo 99.6 4.1E-15 8.8E-20 124.8 8.0 141 47-189 1-173 (199)
38 PF00258 Flavodoxin_1: Flavodo 99.6 1.8E-14 3.8E-19 114.5 10.7 119 51-189 1-124 (143)
39 PRK08105 flavodoxin; Provision 99.5 1.4E-13 3.1E-18 110.6 13.8 120 46-189 1-121 (149)
40 PRK13555 azoreductase; Provisi 99.5 3.3E-13 7.2E-18 114.2 16.4 138 46-185 1-173 (208)
41 COG4635 HemG Flavodoxin [Energ 99.5 4.2E-14 9.2E-19 112.2 7.3 112 47-185 1-114 (175)
42 PRK04930 glutathione-regulated 99.5 6.9E-13 1.5E-17 110.0 13.7 133 44-189 3-150 (184)
43 COG0431 Predicted flavoprotein 99.5 8.2E-13 1.8E-17 109.8 14.0 134 47-190 1-137 (184)
44 PRK05723 flavodoxin; Provision 99.3 3.8E-11 8.2E-16 96.7 14.3 118 47-189 1-122 (151)
45 PRK00871 glutathione-regulated 99.3 2.1E-11 4.5E-16 100.5 11.2 128 49-189 2-142 (176)
46 COG2249 MdaB Putative NADPH-qu 99.3 1.1E-11 2.4E-16 103.2 8.9 112 47-163 1-124 (189)
47 COG1182 AcpD Acyl carrier prot 99.2 2.5E-10 5.4E-15 94.7 12.9 142 46-187 1-172 (202)
48 PRK10953 cysJ sulfite reductas 99.2 2.4E-10 5.3E-15 110.6 14.8 122 44-188 59-181 (600)
49 TIGR01931 cysJ sulfite reducta 99.1 8.3E-10 1.8E-14 107.1 14.2 120 46-188 58-178 (597)
50 KOG4530 Predicted flavoprotein 99.1 8.4E-10 1.8E-14 87.7 10.4 134 44-186 8-149 (199)
51 PRK03600 nrdI ribonucleotide r 98.9 4.4E-08 9.6E-13 77.3 11.9 79 47-164 1-84 (134)
52 TIGR00333 nrdI ribonucleoside- 98.6 6.4E-07 1.4E-11 69.7 10.2 71 51-161 1-72 (125)
53 PRK02551 flavoprotein NrdI; Pr 98.2 3.1E-05 6.8E-10 62.4 11.9 115 46-187 1-127 (154)
54 KOG1159 NADP-dependent flavopr 98.2 1.2E-05 2.6E-10 74.6 9.8 119 47-187 1-121 (574)
55 PF07972 Flavodoxin_NdrI: NrdI 97.2 0.00094 2E-08 51.7 6.3 100 51-187 1-105 (122)
56 COG1780 NrdI Protein involved 97.0 0.018 3.9E-07 45.1 11.2 80 48-165 2-86 (141)
57 COG0369 CysJ Sulfite reductase 96.1 0.015 3.2E-07 56.6 7.0 120 45-187 46-166 (587)
58 PRK10310 PTS system galactitol 95.9 0.018 3.9E-07 42.4 5.2 37 48-85 4-40 (94)
59 COG1440 CelA Phosphotransferas 95.2 0.19 4.1E-06 37.4 8.1 87 46-166 1-89 (102)
60 PRK10499 PTS system N,N'-diace 94.8 0.58 1.2E-05 35.2 10.2 98 46-181 3-102 (106)
61 PRK10427 putative PTS system f 94.6 0.2 4.3E-06 38.3 7.4 64 46-125 2-67 (114)
62 TIGR00853 pts-lac PTS system, 94.5 0.079 1.7E-06 39.1 4.8 59 45-125 2-60 (95)
63 PF02302 PTS_IIB: PTS system, 94.2 0.17 3.6E-06 36.4 5.9 59 48-127 1-59 (90)
64 PRK09590 celB cellobiose phosp 93.9 0.11 2.5E-06 39.0 4.6 38 46-85 1-38 (104)
65 COG1445 FrwB Phosphotransferas 93.7 0.34 7.3E-06 37.3 6.8 64 46-125 1-66 (122)
66 KOG1160 Fe-S oxidoreductase [E 93.4 0.78 1.7E-05 42.9 9.9 93 46-163 46-143 (601)
67 cd05565 PTS_IIB_lactose PTS_II 92.7 0.2 4.4E-06 37.3 4.2 78 48-159 2-79 (99)
68 COG3414 SgaB Phosphotransferas 92.0 0.48 1E-05 34.9 5.5 39 46-85 1-41 (93)
69 PRK13143 hisH imidazole glycer 91.5 0.92 2E-05 37.9 7.4 47 47-124 1-47 (200)
70 cd05566 PTS_IIB_galactitol PTS 90.8 0.61 1.3E-05 33.4 5.0 35 47-82 1-35 (89)
71 cd05564 PTS_IIB_chitobiose_lic 90.0 0.64 1.4E-05 34.2 4.6 36 48-85 1-36 (96)
72 PRK09548 PTS system ascorbate- 89.5 0.91 2E-05 44.3 6.3 51 32-83 492-542 (602)
73 PF06283 ThuA: Trehalose utili 88.6 3.2 7E-05 34.9 8.6 72 48-141 1-78 (217)
74 PRK06490 glutamine amidotransf 88.3 3.7 8.1E-05 35.4 8.8 37 44-85 5-41 (239)
75 cd05567 PTS_IIB_mannitol PTS_I 88.1 1.4 3E-05 31.6 5.2 36 47-83 1-36 (87)
76 PRK10712 PTS system fructose-s 87.8 2.2 4.7E-05 41.6 7.7 67 43-125 100-168 (563)
77 PRK11404 putative PTS system 87.3 2.3 4.9E-05 40.7 7.4 62 45-122 2-65 (482)
78 PRK07053 glutamine amidotransf 87.0 3.7 8E-05 35.3 8.0 57 45-125 1-58 (234)
79 cd00133 PTS_IIB PTS_IIB: subun 86.6 2.2 4.7E-05 29.3 5.4 30 48-78 1-30 (84)
80 PRK08250 glutamine amidotransf 86.2 5.1 0.00011 34.4 8.5 55 47-125 1-56 (235)
81 PRK13146 hisH imidazole glycer 84.8 2.4 5.2E-05 35.7 5.7 49 46-123 1-49 (209)
82 cd05563 PTS_IIB_ascorbate PTS_ 82.7 3.7 8E-05 29.1 5.2 31 48-79 1-31 (86)
83 PRK01175 phosphoribosylformylg 81.8 14 0.00029 32.5 9.3 56 45-124 2-57 (261)
84 TIGR00829 FRU PTS system, fruc 80.3 8 0.00017 27.8 6.2 58 52-125 3-62 (85)
85 cd05568 PTS_IIB_bgl_like PTS_I 80.2 4.3 9.3E-05 28.4 4.7 27 47-73 1-27 (85)
86 PRK06895 putative anthranilate 77.2 24 0.00053 28.9 9.1 52 47-125 2-54 (190)
87 PRK13608 diacylglycerol glucos 77.2 3.7 8.1E-05 37.7 4.6 41 45-87 4-48 (391)
88 PF09314 DUF1972: Domain of un 75.4 46 0.001 27.6 11.1 72 46-138 1-77 (185)
89 PRK13170 hisH imidazole glycer 73.7 9.6 0.00021 31.7 5.8 44 47-121 1-44 (196)
90 PRK09065 glutamine amidotransf 73.5 34 0.00074 29.3 9.3 58 46-124 1-64 (237)
91 cd05569 PTS_IIB_fructose PTS_I 73.5 17 0.00036 26.6 6.4 60 50-125 2-63 (96)
92 PRK11914 diacylglycerol kinase 72.9 6.1 0.00013 35.0 4.7 41 44-85 6-48 (306)
93 PRK05928 hemD uroporphyrinogen 72.6 9.8 0.00021 32.0 5.7 26 110-142 47-72 (249)
94 PRK04155 chaperone protein Hch 69.9 32 0.0007 30.6 8.5 39 47-86 50-100 (287)
95 PRK14571 D-alanyl-alanine synt 69.8 18 0.0004 31.8 7.1 39 47-86 1-42 (299)
96 CHL00188 hisH imidazole glycer 69.3 21 0.00045 30.1 6.9 49 46-125 1-49 (210)
97 KOG3179 Predicted glutamine sy 68.5 64 0.0014 27.5 9.3 59 46-126 4-70 (245)
98 TIGR01737 FGAM_synth_I phospho 67.5 37 0.0008 28.9 8.2 49 47-124 1-49 (227)
99 PRK11780 isoprenoid biosynthes 66.7 24 0.00051 30.0 6.8 38 46-86 1-43 (217)
100 PLN02404 6,7-dimethyl-8-ribity 66.6 15 0.00033 29.1 5.2 40 47-87 8-51 (141)
101 PRK10017 colanic acid biosynth 66.6 38 0.00082 31.9 8.7 48 110-163 112-159 (426)
102 PF01695 IstB_IS21: IstB-like 65.6 8.1 0.00017 31.6 3.6 69 47-123 47-116 (178)
103 PRK09765 PTS system 2-O-a-mann 65.6 22 0.00047 35.3 7.2 63 47-125 164-228 (631)
104 COG0118 HisH Glutamine amidotr 65.0 20 0.00043 30.2 5.8 59 46-138 1-59 (204)
105 PF00885 DMRL_synthase: 6,7-di 63.9 16 0.00035 29.0 4.9 71 45-131 2-78 (144)
106 COG2910 Putative NADH-flavin r 63.8 51 0.0011 27.7 7.8 86 47-142 1-89 (211)
107 PF13380 CoA_binding_2: CoA bi 63.7 27 0.00059 26.4 6.0 106 48-189 2-108 (116)
108 COG3340 PepE Peptidase E [Amin 63.1 14 0.0003 31.5 4.5 68 35-124 25-93 (224)
109 PRK10125 putative glycosyl tra 62.9 16 0.00035 33.8 5.5 40 47-87 1-41 (405)
110 PF13192 Thioredoxin_3: Thiore 61.7 21 0.00045 24.6 4.7 38 47-86 1-38 (76)
111 PF03446 NAD_binding_2: NAD bi 61.4 51 0.0011 26.2 7.5 117 46-191 1-120 (163)
112 COG2984 ABC-type uncharacteriz 60.6 15 0.00033 33.1 4.6 97 24-140 134-234 (322)
113 PRK03619 phosphoribosylformylg 60.6 59 0.0013 27.5 8.1 48 47-123 1-49 (219)
114 cd04962 GT1_like_5 This family 60.2 8.5 0.00018 34.1 3.0 38 47-85 1-38 (371)
115 PRK01372 ddl D-alanine--D-alan 59.6 42 0.00092 29.4 7.4 42 44-86 2-46 (304)
116 PRK13054 lipid kinase; Reviewe 59.0 25 0.00053 31.1 5.8 40 44-85 1-40 (300)
117 PRK13527 glutamine amidotransf 58.8 26 0.00056 29.0 5.5 34 67-124 19-52 (200)
118 PRK13609 diacylglycerol glucos 58.5 15 0.00032 33.3 4.4 39 46-85 4-43 (380)
119 PRK05788 cobalamin biosynthesi 58.4 19 0.00041 32.5 4.9 60 45-125 2-61 (315)
120 cd03825 GT1_wcfI_like This fam 58.0 15 0.00032 32.3 4.2 39 47-86 1-40 (365)
121 COG1597 LCB5 Sphingosine kinas 57.5 27 0.00058 31.2 5.7 42 45-87 1-44 (301)
122 cd03142 GATase1_ThuA Type 1 gl 57.5 72 0.0016 27.1 8.0 70 48-142 15-86 (215)
123 PRK13059 putative lipid kinase 57.2 27 0.00058 30.9 5.7 40 46-86 1-42 (295)
124 COG0287 TyrA Prephenate dehydr 56.9 34 0.00073 30.3 6.2 61 62-126 13-75 (279)
125 PRK05637 anthranilate synthase 56.8 45 0.00098 28.0 6.7 34 46-85 1-34 (208)
126 PRK13337 putative lipid kinase 56.6 31 0.00068 30.5 6.0 40 46-86 1-42 (304)
127 PRK02645 ppnK inorganic polyph 56.1 22 0.00048 31.8 4.9 39 44-83 1-39 (305)
128 PRK09212 pyruvate dehydrogenas 56.1 44 0.00096 30.2 6.9 75 48-140 203-278 (327)
129 COG2454 Uncharacterized conser 55.2 22 0.00048 29.9 4.4 72 47-135 129-200 (211)
130 cd01748 GATase1_IGP_Synthase T 55.1 42 0.00092 27.6 6.2 44 50-124 2-45 (198)
131 PRK11199 tyrA bifunctional cho 55.1 27 0.00058 32.1 5.5 65 36-126 89-153 (374)
132 PRK11574 oxidative-stress-resi 54.7 62 0.0013 26.4 7.2 99 46-160 2-107 (196)
133 COG1810 Uncharacterized protei 54.4 1.1E+02 0.0023 26.3 8.4 21 46-68 1-21 (224)
134 PRK13055 putative lipid kinase 54.1 35 0.00076 30.8 6.0 39 46-85 2-42 (334)
135 PRK05282 (alpha)-aspartyl dipe 54.0 24 0.00052 30.4 4.6 56 46-123 31-87 (233)
136 PRK12419 riboflavin synthase s 51.9 52 0.0011 26.6 5.9 68 46-130 10-84 (158)
137 TIGR00412 redox_disulf_2 small 51.7 32 0.0007 23.6 4.3 35 51-86 4-38 (76)
138 PRK00061 ribH 6,7-dimethyl-8-r 51.5 51 0.0011 26.5 5.8 42 45-87 11-56 (154)
139 cd03805 GT1_ALG2_like This fam 51.1 22 0.00047 31.9 4.2 38 47-85 1-39 (392)
140 cd03802 GT1_AviGT4_like This f 50.9 27 0.00058 30.3 4.6 40 47-87 1-47 (335)
141 PRK14619 NAD(P)H-dependent gly 50.8 1.8E+02 0.0038 25.7 11.5 63 47-141 5-67 (308)
142 PRK08939 primosomal protein Dn 50.7 16 0.00034 32.8 3.1 68 47-122 156-224 (306)
143 COG1587 HemD Uroporphyrinogen- 50.4 57 0.0012 28.0 6.5 73 46-143 123-196 (248)
144 PRK07765 para-aminobenzoate sy 49.9 76 0.0016 26.7 7.0 55 47-124 1-56 (214)
145 PRK11559 garR tartronate semia 49.8 1.6E+02 0.0036 25.6 9.5 69 111-191 54-122 (296)
146 cd01741 GATase1_1 Subgroup of 49.8 99 0.0022 25.0 7.6 14 111-124 42-55 (188)
147 TIGR01019 sucCoAalpha succinyl 49.7 1.8E+02 0.0039 25.8 9.6 64 110-190 55-121 (286)
148 CHL00144 odpB pyruvate dehydro 48.4 64 0.0014 29.1 6.7 75 48-140 203-278 (327)
149 PLN02832 glutamine amidotransf 47.7 1E+02 0.0022 26.8 7.5 14 110-123 33-46 (248)
150 PF04392 ABC_sub_bind: ABC tra 47.7 35 0.00075 29.9 4.8 41 46-87 131-171 (294)
151 PLN02683 pyruvate dehydrogenas 45.1 89 0.0019 28.6 7.2 75 48-140 230-305 (356)
152 PF01866 Diphthamide_syn: Puta 44.7 67 0.0014 28.7 6.2 59 47-124 210-270 (307)
153 PLN02335 anthranilate synthase 44.6 96 0.0021 26.2 6.9 37 43-85 15-51 (222)
154 PF01113 DapB_N: Dihydrodipico 44.5 1.2E+02 0.0027 22.9 6.9 39 111-163 63-101 (124)
155 TIGR01692 HIBADH 3-hydroxyisob 43.8 2E+02 0.0044 25.0 9.1 107 63-191 7-116 (288)
156 cd03132 GATase1_catalase Type 43.8 1.4E+02 0.0031 22.7 7.5 97 47-160 2-103 (142)
157 TIGR00114 lumazine-synth 6,7-d 43.7 56 0.0012 25.8 4.9 40 47-87 1-44 (138)
158 PF13730 HTH_36: Helix-turn-he 43.7 8.9 0.00019 24.5 0.3 16 3-18 20-35 (55)
159 PTZ00182 3-methyl-2-oxobutanat 43.6 85 0.0018 28.8 6.8 75 47-139 234-309 (355)
160 PRK10834 vancomycin high tempe 43.0 56 0.0012 28.3 5.2 62 118-184 48-111 (239)
161 PRK08727 hypothetical protein; 42.8 1.1E+02 0.0024 25.9 7.1 58 48-122 42-100 (233)
162 cd01750 GATase1_CobQ Type 1 gl 42.4 1.4E+02 0.0031 24.5 7.5 47 49-125 1-47 (194)
163 PRK12490 6-phosphogluconate de 42.3 2.4E+02 0.0051 24.8 9.3 61 116-192 60-121 (299)
164 PRK02261 methylaspartate mutas 42.3 1.6E+02 0.0035 22.9 10.8 78 47-143 2-80 (137)
165 PRK06455 riboflavin synthase; 41.8 49 0.0011 26.7 4.3 39 46-87 1-41 (155)
166 PRK06545 prephenate dehydrogen 41.8 2.7E+02 0.0059 25.3 9.9 72 62-142 10-81 (359)
167 PRK13141 hisH imidazole glycer 41.8 73 0.0016 26.3 5.7 45 49-124 2-46 (205)
168 PRK00726 murG undecaprenyldiph 41.5 36 0.00079 30.3 4.1 39 46-86 1-39 (357)
169 PF00763 THF_DHG_CYH: Tetrahyd 41.4 1.3E+02 0.0028 22.7 6.5 71 47-129 30-101 (117)
170 PF00117 GATase: Glutamine ami 41.3 1.9E+02 0.0041 23.3 8.3 64 55-142 5-69 (192)
171 PLN02617 imidazole glycerol ph 41.2 1.2E+02 0.0026 29.5 7.7 47 46-123 6-52 (538)
172 PRK13566 anthranilate synthase 41.2 2.2E+02 0.0048 28.9 9.7 35 46-86 526-560 (720)
173 cd03129 GAT1_Peptidase_E_like 40.8 1.7E+02 0.0037 24.2 7.8 69 46-136 29-97 (210)
174 PF00289 CPSase_L_chain: Carba 40.8 94 0.002 23.3 5.6 103 47-189 3-105 (110)
175 PRK00861 putative lipid kinase 40.6 72 0.0016 28.1 5.8 39 46-86 2-42 (300)
176 PF13344 Hydrolase_6: Haloacid 40.6 30 0.00064 25.4 2.8 55 115-186 4-58 (101)
177 PF08357 SEFIR: SEFIR domain; 40.6 46 0.00099 25.9 4.0 68 47-126 1-70 (150)
178 PLN02871 UDP-sulfoquinovose:DA 40.4 68 0.0015 30.0 5.9 52 34-86 46-101 (465)
179 COG1484 DnaC DNA replication p 40.4 26 0.00055 30.5 2.8 69 47-123 105-175 (254)
180 PRK11200 grxA glutaredoxin 1; 40.2 90 0.002 21.6 5.2 40 47-86 1-40 (85)
181 COG1587 HemD Uroporphyrinogen- 40.0 1.3E+02 0.0028 25.7 7.1 42 110-159 45-86 (248)
182 PF02780 Transketolase_C: Tran 39.4 45 0.00097 25.1 3.7 38 47-88 10-47 (124)
183 PRK05395 3-dehydroquinate dehy 39.3 46 0.00099 26.6 3.7 79 46-141 1-92 (146)
184 PF01220 DHquinase_II: Dehydro 39.2 25 0.00054 27.9 2.2 77 47-141 1-91 (140)
185 PRK05642 DNA replication initi 39.0 34 0.00073 29.2 3.3 38 47-86 45-83 (234)
186 cd03146 GAT1_Peptidase_E Type 39.0 2E+02 0.0043 24.0 7.9 57 46-123 31-88 (212)
187 TIGR01815 TrpE-clade3 anthrani 39.0 2.1E+02 0.0045 29.0 9.2 36 44-85 514-549 (717)
188 PRK09599 6-phosphogluconate de 39.0 2.4E+02 0.0053 24.7 8.9 63 115-192 59-121 (301)
189 PRK06893 DNA replication initi 38.9 1.2E+02 0.0025 25.7 6.6 36 48-85 40-76 (229)
190 PRK08116 hypothetical protein; 38.8 69 0.0015 28.0 5.3 37 48-86 115-152 (268)
191 cd01452 VWA_26S_proteasome_sub 38.7 53 0.0011 27.3 4.2 40 47-87 108-147 (187)
192 cd04124 RabL2 RabL2 subfamily. 38.5 1.8E+02 0.004 22.4 7.9 46 110-160 67-112 (161)
193 PRK05678 succinyl-CoA syntheta 38.2 2.9E+02 0.0063 24.6 9.5 64 110-190 57-123 (291)
194 smart00177 ARF ARF-like small 37.8 2E+02 0.0044 22.7 8.0 22 46-67 13-34 (175)
195 PRK13525 glutamine amidotransf 37.8 66 0.0014 26.5 4.7 47 46-124 1-47 (189)
196 COG0078 ArgF Ornithine carbamo 37.0 2.9E+02 0.0063 24.9 8.8 87 110-236 113-204 (310)
197 PRK12377 putative replication 36.9 1.4E+02 0.0031 25.8 6.8 69 48-123 102-171 (248)
198 TIGR02069 cyanophycinase cyano 36.6 1.1E+02 0.0023 26.6 6.0 68 40-123 22-90 (250)
199 TIGR01133 murG undecaprenyldip 36.4 51 0.0011 29.0 4.2 35 47-83 1-35 (348)
200 COG1763 MobB Molybdopterin-gua 36.0 73 0.0016 25.8 4.6 38 46-85 1-39 (161)
201 cd01740 GATase1_FGAR_AT Type 1 35.7 2.1E+02 0.0045 24.4 7.7 31 75-124 22-52 (238)
202 CHL00197 carA carbamoyl-phosph 35.5 78 0.0017 29.4 5.2 30 47-84 193-222 (382)
203 COG1927 Mtd Coenzyme F420-depe 35.4 2.9E+02 0.0062 23.7 10.2 92 48-160 4-95 (277)
204 PRK10712 PTS system fructose-s 35.4 62 0.0013 31.7 4.7 33 47-80 1-35 (563)
205 PRK11538 ribosome-associated p 35.3 1.1E+02 0.0024 22.8 5.2 53 60-141 3-55 (105)
206 COG4551 Predicted protein tyro 35.2 21 0.00045 26.3 1.1 40 109-160 44-83 (109)
207 PF01820 Dala_Dala_lig_N: D-al 35.0 98 0.0021 23.3 5.0 40 47-87 1-43 (117)
208 PF11965 DUF3479: Domain of un 34.8 1.1E+02 0.0024 24.9 5.4 77 47-139 1-80 (164)
209 PRK01966 ddl D-alanyl-alanine 34.6 88 0.0019 28.1 5.4 41 45-86 2-45 (333)
210 PF01210 NAD_Gly3P_dh_N: NAD-d 34.5 24 0.00053 28.0 1.6 27 111-143 65-91 (157)
211 COG3360 Uncharacterized conser 34.4 63 0.0014 22.3 3.3 27 47-73 7-33 (71)
212 PF09960 DUF2194: Uncharacteri 33.7 1.5E+02 0.0032 29.2 7.0 77 45-140 52-128 (585)
213 PRK11892 pyruvate dehydrogenas 33.5 1.6E+02 0.0034 28.1 7.1 75 48-140 342-417 (464)
214 cd03820 GT1_amsD_like This fam 33.4 72 0.0016 27.0 4.5 39 48-87 1-41 (348)
215 PRK06526 transposase; Provisio 33.3 80 0.0017 27.4 4.7 73 47-127 98-171 (254)
216 PF03575 Peptidase_S51: Peptid 33.2 32 0.0007 27.2 2.1 40 65-122 3-42 (154)
217 PRK14189 bifunctional 5,10-met 33.2 3.5E+02 0.0076 24.0 10.7 41 47-88 33-73 (285)
218 cd06388 PBP1_iGluR_AMPA_GluR4 32.8 86 0.0019 28.6 5.1 37 47-86 125-161 (371)
219 PF00781 DAGK_cat: Diacylglyce 32.7 1.8E+02 0.0039 21.9 6.2 36 48-86 1-38 (130)
220 COG0512 PabA Anthranilate/para 32.7 2.6E+02 0.0057 23.4 7.4 68 46-138 1-72 (191)
221 TIGR01855 IMP_synth_hisH imida 32.5 1.1E+02 0.0024 25.2 5.2 44 50-124 2-45 (196)
222 COG3019 Predicted metal-bindin 32.5 2.4E+02 0.0052 22.5 6.7 77 39-133 17-94 (149)
223 PRK00074 guaA GMP synthase; Re 32.4 1.5E+02 0.0033 28.6 6.8 34 46-85 3-36 (511)
224 TIGR00888 guaA_Nterm GMP synth 32.0 2.3E+02 0.005 22.9 7.1 25 56-85 7-31 (188)
225 PRK14194 bifunctional 5,10-met 32.0 3.8E+02 0.0082 24.1 13.3 41 46-87 33-73 (301)
226 cd03030 GRX_SH3BGR Glutaredoxi 31.9 1.1E+02 0.0023 22.3 4.5 36 50-86 2-40 (92)
227 TIGR00872 gnd_rel 6-phosphoglu 31.8 3.6E+02 0.0077 23.7 8.8 108 63-191 11-119 (298)
228 PRK14569 D-alanyl-alanine synt 31.3 96 0.0021 27.3 5.0 40 45-85 2-44 (296)
229 COG2242 CobL Precorrin-6B meth 31.3 2.4E+02 0.0053 23.5 7.0 66 104-188 92-158 (187)
230 cd05212 NAD_bind_m-THF_DH_Cycl 31.3 94 0.002 24.4 4.4 54 47-126 29-82 (140)
231 PLN02948 phosphoribosylaminoim 31.3 1.6E+02 0.0034 28.9 6.8 46 35-87 11-56 (577)
232 TIGR02717 AcCoA-syn-alpha acet 31.2 4.5E+02 0.0098 24.7 11.7 63 115-190 64-128 (447)
233 PF00819 Myotoxins: Myotoxin; 31.1 11 0.00025 22.6 -0.6 10 3-12 7-16 (43)
234 PRK06444 prephenate dehydrogen 30.7 82 0.0018 26.3 4.2 28 47-80 1-28 (197)
235 PRK01231 ppnK inorganic polyph 30.7 92 0.002 27.7 4.7 37 46-83 4-40 (295)
236 PRK06851 hypothetical protein; 30.5 1.3E+02 0.0027 27.9 5.7 55 24-86 197-252 (367)
237 TIGR00322 diphth2_R diphthamid 30.5 1.1E+02 0.0024 27.8 5.3 41 47-88 233-274 (332)
238 PF04127 DFP: DNA / pantothena 30.3 40 0.00087 27.9 2.2 83 47-131 4-98 (185)
239 PRK05752 uroporphyrinogen-III 30.1 75 0.0016 27.2 4.0 26 110-142 50-75 (255)
240 cd04951 GT1_WbdM_like This fam 29.9 90 0.0019 27.1 4.6 38 48-86 1-39 (360)
241 PRK15083 PTS system mannitol-s 29.7 86 0.0019 31.1 4.8 38 46-84 378-416 (639)
242 PRK13181 hisH imidazole glycer 29.6 1.6E+02 0.0035 24.1 5.9 45 49-124 2-46 (199)
243 PRK15005 universal stress prot 29.5 1E+02 0.0023 23.2 4.4 40 46-86 2-42 (144)
244 PRK10307 putative glycosyl tra 29.5 69 0.0015 29.2 3.9 38 47-85 1-41 (412)
245 PF13439 Glyco_transf_4: Glyco 29.5 55 0.0012 25.0 2.9 30 56-86 10-39 (177)
246 cd04955 GT1_like_6 This family 29.4 74 0.0016 27.7 4.0 38 48-86 1-42 (363)
247 PRK03708 ppnK inorganic polyph 29.4 96 0.0021 27.3 4.6 36 47-83 1-36 (277)
248 PRK08903 DnaA regulatory inact 29.3 92 0.002 26.0 4.4 72 13-86 4-80 (227)
249 PF09651 Cas_APE2256: CRISPR-a 29.2 1E+02 0.0022 24.0 4.3 37 49-86 24-60 (136)
250 cd06259 YdcF-like YdcF-like. Y 29.1 1.6E+02 0.0034 22.7 5.4 63 118-184 3-65 (150)
251 COG1004 Ugd Predicted UDP-gluc 28.9 11 0.00024 35.0 -1.4 116 1-124 256-385 (414)
252 PRK08181 transposase; Validate 28.9 51 0.0011 28.9 2.8 69 48-124 107-176 (269)
253 PF13458 Peripla_BP_6: Peripla 28.4 3.9E+02 0.0085 23.1 8.7 88 46-160 135-225 (343)
254 PRK00094 gpsA NAD(P)H-dependen 28.3 3.3E+02 0.007 23.8 8.0 25 112-142 68-92 (325)
255 PF07881 Fucose_iso_N1: L-fuco 28.3 1.4E+02 0.003 24.5 4.9 69 47-129 4-90 (171)
256 PRK06217 hypothetical protein; 28.3 63 0.0014 26.1 3.1 26 46-72 1-26 (183)
257 PRK06851 hypothetical protein; 28.1 1.5E+02 0.0033 27.4 5.8 53 25-85 14-67 (367)
258 COG0394 Wzb Protein-tyrosine-p 28.0 68 0.0015 25.2 3.1 26 45-73 1-28 (139)
259 cd04121 Rab40 Rab40 subfamily. 27.9 3.3E+02 0.0072 22.1 7.5 45 111-160 74-118 (189)
260 cd03145 GAT1_cyanophycinase Ty 27.8 1.6E+02 0.0034 24.7 5.5 64 44-123 27-91 (217)
261 PRK07119 2-ketoisovalerate fer 27.7 1.1E+02 0.0024 27.9 4.9 38 47-89 247-285 (352)
262 cd04106 Rab23_lke Rab23-like s 27.5 2.7E+02 0.006 21.0 6.7 45 111-160 70-114 (162)
263 PRK08084 DNA replication initi 27.2 76 0.0017 27.0 3.5 37 48-86 46-83 (235)
264 PLN02958 diacylglycerol kinase 27.2 1.3E+02 0.0029 28.7 5.5 40 45-85 110-152 (481)
265 cd01743 GATase1_Anthranilate_S 27.0 94 0.002 25.1 3.9 32 75-125 21-53 (184)
266 PRK06835 DNA replication prote 27.0 2.4E+02 0.0051 25.6 6.8 69 48-122 184-253 (329)
267 cd03812 GT1_CapH_like This fam 26.8 3.7E+02 0.008 23.2 8.0 39 48-87 1-40 (358)
268 PRK08818 prephenate dehydrogen 26.8 1.1E+02 0.0024 28.3 4.6 16 111-126 47-62 (370)
269 PRK06975 bifunctional uroporph 26.7 1.8E+02 0.0039 29.0 6.5 27 110-143 50-76 (656)
270 cd03067 PDI_b_PDIR_N PDIb fami 26.7 1.7E+02 0.0037 22.1 4.7 41 45-87 18-61 (112)
271 PRK07952 DNA replication prote 26.6 2.3E+02 0.005 24.4 6.4 72 48-125 100-172 (244)
272 PRK14167 bifunctional 5,10-met 26.6 4.1E+02 0.0088 23.8 8.1 42 46-88 31-72 (297)
273 PRK14169 bifunctional 5,10-met 26.5 4.6E+02 0.0099 23.3 8.4 41 47-88 31-71 (282)
274 PRK14098 glycogen synthase; Pr 26.4 1.1E+02 0.0025 29.0 4.9 41 43-84 2-47 (489)
275 cd03141 GATase1_Hsp31_like Typ 26.3 95 0.0021 26.1 3.9 41 113-160 88-131 (221)
276 PRK10474 putative PTS system f 26.3 1.8E+02 0.004 20.7 4.9 47 63-125 2-48 (88)
277 cd03795 GT1_like_4 This family 26.3 96 0.0021 26.9 4.1 39 48-87 1-42 (357)
278 PF01380 SIS: SIS domain SIS d 26.1 2E+02 0.0044 21.1 5.4 35 47-83 53-87 (131)
279 COG2210 Peroxiredoxin family p 26.0 1.7E+02 0.0037 23.1 4.9 38 46-84 2-39 (137)
280 cd01866 Rab2 Rab2 subfamily. 26.0 2.9E+02 0.0063 21.3 6.6 47 110-160 71-117 (168)
281 cd01080 NAD_bind_m-THF_DH_Cycl 26.0 1.1E+02 0.0024 24.8 4.1 18 110-127 82-99 (168)
282 PRK13302 putative L-aspartate 25.9 4.4E+02 0.0096 22.9 10.3 60 113-191 65-125 (271)
283 PRK14866 hypothetical protein; 25.8 1.8E+02 0.004 27.7 6.0 25 47-71 1-25 (451)
284 PRK14186 bifunctional 5,10-met 25.8 4.5E+02 0.0097 23.5 8.2 41 46-87 32-72 (297)
285 PRK11249 katE hydroperoxidase 25.4 5.7E+02 0.012 26.1 9.6 51 30-85 582-633 (752)
286 COG0693 ThiJ Putative intracel 25.4 2.4E+02 0.0053 22.6 6.1 41 113-160 64-107 (188)
287 PF03721 UDPG_MGDP_dh_N: UDP-g 25.4 2.3E+02 0.0049 23.2 5.9 37 49-86 114-152 (185)
288 cd03147 GATase1_Ydr533c_like T 25.2 85 0.0018 26.8 3.4 42 112-160 91-135 (231)
289 PF06554 Olfactory_mark: Olfac 25.2 71 0.0015 25.0 2.6 16 228-243 109-124 (151)
290 PLN00223 ADP-ribosylation fact 25.2 3.5E+02 0.0076 21.5 7.4 24 44-67 15-38 (181)
291 COG1736 DPH2 Diphthamide synth 25.2 1.8E+02 0.0039 26.7 5.6 41 47-88 238-279 (347)
292 cd03148 GATase1_EcHsp31_like T 25.1 86 0.0019 26.8 3.4 30 113-142 94-126 (232)
293 PRK10792 bifunctional 5,10-met 25.0 4.9E+02 0.011 23.1 8.6 42 46-88 33-74 (285)
294 PRK11880 pyrroline-5-carboxyla 25.0 4.3E+02 0.0093 22.4 8.0 15 112-126 59-73 (267)
295 PLN02234 1-deoxy-D-xylulose-5- 25.0 4.8E+02 0.01 26.1 9.0 75 48-140 546-620 (641)
296 PRK05665 amidotransferase; Pro 24.9 4.4E+02 0.0096 22.5 9.7 14 112-125 54-68 (240)
297 PLN03071 GTP-binding nuclear p 24.9 4E+02 0.0087 22.0 8.9 108 44-160 11-125 (219)
298 PF12743 ESR1_C: Oestrogen-typ 24.8 59 0.0013 20.3 1.7 13 32-44 11-23 (43)
299 COG5012 Predicted cobalamin bi 24.7 3.4E+02 0.0075 23.3 6.9 83 50-155 106-189 (227)
300 PRK14568 vanB D-alanine--D-lac 24.6 1.6E+02 0.0036 26.4 5.4 41 45-86 2-45 (343)
301 PRK14188 bifunctional 5,10-met 24.5 4.8E+02 0.01 23.3 8.2 42 46-88 32-73 (296)
302 cd06389 PBP1_iGluR_AMPA_GluR2 24.4 2.7E+02 0.0059 25.2 6.8 36 47-85 119-154 (370)
303 PRK08367 porA pyruvate ferredo 23.8 5.1E+02 0.011 24.1 8.5 68 49-135 265-332 (394)
304 cd03130 GATase1_CobB Type 1 gl 23.8 1.8E+02 0.004 23.9 5.1 11 113-123 38-48 (198)
305 PF09822 ABC_transp_aux: ABC-t 23.6 3.8E+02 0.0082 23.0 7.3 69 111-188 192-266 (271)
306 PF00496 SBP_bac_5: Bacterial 23.6 2E+02 0.0044 25.4 5.8 72 48-138 295-367 (374)
307 COG0240 GpsA Glycerol-3-phosph 23.5 5.7E+02 0.012 23.3 9.8 17 111-127 67-83 (329)
308 cd06578 HemD Uroporphyrinogen- 23.4 2.8E+02 0.006 22.7 6.3 26 110-142 44-69 (239)
309 PLN02204 diacylglycerol kinase 23.4 2.1E+02 0.0044 28.4 6.0 81 44-138 157-239 (601)
310 PRK02649 ppnK inorganic polyph 23.2 1.4E+02 0.003 26.8 4.5 36 46-82 1-36 (305)
311 cd03823 GT1_ExpE7_like This fa 23.1 1.2E+02 0.0025 26.0 4.0 39 48-87 1-43 (359)
312 PLN02225 1-deoxy-D-xylulose-5- 23.1 3E+02 0.0065 27.8 7.1 75 48-140 569-643 (701)
313 PF02595 Gly_kinase: Glycerate 23.0 1.2E+02 0.0026 28.2 4.1 40 47-86 1-43 (377)
314 PRK14077 pnk inorganic polypho 22.9 1.5E+02 0.0032 26.4 4.5 35 46-82 10-44 (287)
315 PF13460 NAD_binding_10: NADH( 22.7 1.8E+02 0.004 22.8 4.9 32 110-142 55-86 (183)
316 cd01965 Nitrogenase_MoFe_beta_ 22.5 5.5E+02 0.012 23.8 8.6 111 60-188 66-187 (428)
317 PRK14180 bifunctional 5,10-met 22.4 5.5E+02 0.012 22.8 8.2 42 46-88 31-72 (282)
318 PRK14190 bifunctional 5,10-met 22.2 5.3E+02 0.012 22.9 7.9 41 47-88 33-73 (284)
319 PF11382 DUF3186: Protein of u 22.2 2.4E+02 0.0053 25.2 5.9 51 135-189 66-116 (308)
320 COG3828 Uncharacterized protei 22.2 51 0.0011 27.8 1.4 37 44-81 1-38 (239)
321 PF02288 Dehydratase_MU: Dehyd 22.2 79 0.0017 24.0 2.4 35 51-86 6-40 (112)
322 TIGR03682 arCOG04112 arCOG0411 22.0 2E+02 0.0043 25.8 5.3 41 47-88 213-254 (308)
323 PF13507 GATase_5: CobB/CobQ-l 21.9 1.1E+02 0.0023 26.9 3.4 54 47-124 2-55 (259)
324 cd03808 GT1_cap1E_like This fa 21.9 1.6E+02 0.0034 25.0 4.6 38 48-87 1-38 (359)
325 cd03807 GT1_WbnK_like This fam 21.9 4.8E+02 0.01 22.0 7.7 38 48-86 1-39 (365)
326 cd01968 Nitrogenase_NifE_I Nit 21.9 5.9E+02 0.013 23.4 8.7 112 58-188 69-189 (410)
327 TIGR01501 MthylAspMutase methy 21.6 4E+02 0.0086 20.8 10.5 104 54-184 7-111 (134)
328 PRK08655 prephenate dehydrogen 21.5 2E+02 0.0043 27.1 5.4 79 47-142 1-79 (437)
329 TIGR00147 lipid kinase, YegS/R 21.4 1.7E+02 0.0038 25.4 4.8 40 46-86 1-42 (293)
330 KOG2728 Uncharacterized conser 21.4 1.2E+02 0.0025 26.7 3.4 34 124-163 8-41 (302)
331 cd03140 GATase1_PfpI_3 Type 1 21.4 1.4E+02 0.0031 23.6 4.0 40 114-160 59-99 (170)
332 PRK13626 transcriptional regul 21.3 2.4E+02 0.0051 27.3 6.0 37 48-85 404-440 (552)
333 PRK06701 short chain dehydroge 21.2 3.3E+02 0.0071 23.6 6.5 71 9-85 4-79 (290)
334 PLN02605 monogalactosyldiacylg 21.2 1.3E+02 0.0028 27.3 4.0 38 49-87 1-41 (382)
335 cd01974 Nitrogenase_MoFe_beta 21.2 5E+02 0.011 24.2 8.1 117 49-187 63-191 (435)
336 cd06380 PBP1_iGluR_AMPA N-term 21.1 5.9E+02 0.013 22.7 8.4 36 46-84 126-163 (382)
337 COG0386 BtuE Glutathione perox 21.0 2.2E+02 0.0047 23.1 4.6 42 149-190 22-64 (162)
338 PHA03075 glutaredoxin-like pro 20.9 1.7E+02 0.0037 22.5 3.9 34 46-84 1-35 (123)
339 PRK00207 sulfur transfer compl 20.9 1.7E+02 0.0036 22.5 4.0 39 47-86 1-42 (128)
340 cd02973 TRX_GRX_like Thioredox 20.9 2.3E+02 0.005 18.2 4.3 38 49-86 3-40 (67)
341 PF02882 THF_DHG_CYH_C: Tetrah 20.8 1.5E+02 0.0033 23.9 3.9 55 46-127 36-91 (160)
342 cd04147 Ras_dva Ras-dva subfam 20.7 4.5E+02 0.0097 21.1 8.1 47 111-160 66-112 (198)
343 cd06386 PBP1_NPR_C_like Ligand 20.5 4.1E+02 0.0088 24.1 7.2 37 47-84 138-176 (387)
344 cd03811 GT1_WabH_like This fam 20.4 1.3E+02 0.0029 25.3 3.8 39 48-87 1-40 (353)
345 PRK14172 bifunctional 5,10-met 20.4 6.1E+02 0.013 22.5 8.3 42 46-88 32-73 (278)
346 PRK08118 topology modulation p 20.3 1.2E+02 0.0025 24.3 3.2 26 46-72 1-26 (167)
347 TIGR00873 gnd 6-phosphoglucona 20.2 7.6E+02 0.016 23.5 11.9 113 63-192 10-125 (467)
348 PRK14166 bifunctional 5,10-met 20.2 6.2E+02 0.013 22.5 8.1 41 46-87 30-70 (282)
349 COG0518 GuaA GMP synthase - Gl 20.2 3.6E+02 0.0078 22.5 6.2 22 46-68 1-22 (198)
350 cd01971 Nitrogenase_VnfN_like 20.1 7.1E+02 0.015 23.1 9.0 113 58-187 69-190 (427)
351 PRK14176 bifunctional 5,10-met 20.1 5.8E+02 0.013 22.7 7.7 42 46-88 38-79 (287)
352 TIGR03294 FrhG coenzyme F420 h 20.0 2E+02 0.0043 24.5 4.7 44 112-164 47-90 (228)
No 1
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=100.00 E-value=2.6e-36 Score=254.05 Aligned_cols=198 Identities=44% Similarity=0.741 Sum_probs=167.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCC-CCCCcccchhhhhccCeEEEecc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQK-GIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~-~d~~~~~~~~~l~~aD~II~gsP 124 (252)
||||+|||+|++|||++||++|++++++..|++++++++.+..|..+.....|... .+++. ..+++.+||+||||||
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVA--TPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCcc--CHHHHHhCCEEEEEec
Confidence 57999999999999999999999999753589999999987666555543333321 12222 2688999999999999
Q ss_pred ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCC
Q 040588 125 TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLR 204 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 204 (252)
+|+|+++++||.|+|++..+|....+.+|++++|+++||.+|+.+.++.++...+.++||.+++.++.+ ...+..+.++
T Consensus 79 ty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~~~~~-~~~~~~~~~~ 157 (200)
T PRK03767 79 TRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLPYAF-QGQMDVDEVT 157 (200)
T ss_pred ccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCCCCcc-cccccccccc
Confidence 999999999999999998888766799999999999999888888899999999999999999987753 3333445677
Q ss_pred CCCccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 040588 205 GGSPYGAGVFSG-DGTRKPTETELALAEHQGKYMAAIVKKFSH 246 (252)
Q Consensus 205 ~~~~~G~~~~~~-~~~~~pde~~l~~a~~~g~~la~~~~~l~~ 246 (252)
+|++||+.++.+ +++.+|+++|++.|+.+|+|+|+++++|++
T Consensus 158 ~g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~~ 200 (200)
T PRK03767 158 GGSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLAG 200 (200)
T ss_pred CCcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999998876 677899999999999999999999999874
No 2
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=100.00 E-value=2.3e-36 Score=253.80 Aligned_cols=196 Identities=46% Similarity=0.818 Sum_probs=169.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
+||+|||+|++|||++||++|++++++..|++++++++.+..+..|+.+..|.. +++.+.++.+++.+||+||||||+|
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~aD~ii~GSPty 79 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKT-DQTAPVATPQELADYDAIIFGTPTR 79 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCc-ccCCccCCHHHHHHCCEEEEEeccc
Confidence 489999999999999999999999986238999999998877777776655542 3333444457899999999999999
Q ss_pred CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCCCC
Q 040588 127 FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGG 206 (252)
Q Consensus 127 ~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~ 206 (252)
+++++++||.|+|++..+|....+.||++++|+++||.+|+.+.++.++...|.++||.+|+.+|. |...+.++.++++
T Consensus 80 ~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~~~~-~~~~~~~~~~~gg 158 (197)
T TIGR01755 80 FGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPLPYA-AQEQMGVDEVRGG 158 (197)
T ss_pred ccCccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCCCcc-cccccccccccCC
Confidence 999999999999999888876679999999999999988889889999999999999999998775 3445556677899
Q ss_pred CccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040588 207 SPYGAGVFSG-DGTRKPTETELALAEHQGKYMAAIVKKF 244 (252)
Q Consensus 207 ~~~G~~~~~~-~~~~~pde~~l~~a~~~g~~la~~~~~l 244 (252)
.+||+.++.+ +++.+|++.|++.|+.+|+|+|+++++|
T Consensus 159 ~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 159 SPYGATTIAGGDGSRQPSAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred CCcceeeEcCCCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999886 6778999999999999999999999875
No 3
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=228.70 Aligned_cols=201 Identities=61% Similarity=1.019 Sum_probs=188.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|.||.||++|.+|+-..||+++.++++. .|-+++++.+.+.++++.+.+...+.+..+.|.++.+.|.+||+++||.|+
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~-a~geA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PT 79 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIES-AGGEATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPT 79 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhc-cCCeeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccc
Confidence 5699999999999999999999999998 566999999999999999988888888788999989999999999999999
Q ss_pred cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCcc-CCCccccccCCC
Q 040588 126 RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYT-FGTEMFGMDSLR 204 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~-~~~~~~~~~~~~ 204 (252)
.+|++|+++|.|+|....+|..+.|.||++++|.|.|+.+|++|.+...-...|.+|||++|+.+|. ++++++++++++
T Consensus 80 RfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGmifVPlGYkn~~a~m~~me~V~ 159 (203)
T KOG3135|consen 80 RFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGMIFVPLGYKNFGAEMFEMEEVH 159 (203)
T ss_pred cccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcceEEEecccchhhhhhhhhhccc
Confidence 9999999999999999999999999999999999999888899999888889999999999999998 568899999999
Q ss_pred CCCccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 040588 205 GGSPYGAGVFSG-DGTRKPTETELALAEHQGKYMAAIVKKFSHP 247 (252)
Q Consensus 205 ~~~~~G~~~~~~-~~~~~pde~~l~~a~~~g~~la~~~~~l~~~ 247 (252)
+|++||++++++ ||.+.|++.+|+.++-.|+.+++.+++|+++
T Consensus 160 Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~~~ 203 (203)
T KOG3135|consen 160 GGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFAEIVKKLKGP 203 (203)
T ss_pred CCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhcCC
Confidence 999999999999 9999999999999999999999999999864
No 4
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.95 E-value=3.6e-27 Score=199.53 Aligned_cols=195 Identities=34% Similarity=0.542 Sum_probs=156.1
Q ss_pred ceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcc------cCCCCCCCCcccchhhhhccCe
Q 040588 47 LKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQM------KVPQKGIEVPVIAVDDLVHADG 118 (252)
Q Consensus 47 ~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~------~~~~~~d~~~~~~~~~l~~aD~ 118 (252)
|||+.|.+|+ +|||.+|++++++++++ .|+|++++++.+.....|..+. .|..++|++.++ .++|.+||+
T Consensus 1 mki~~I~gs~r~~G~t~~l~~~~~~g~~~-~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i-~~~l~~aD~ 78 (207)
T COG0655 1 MKILGINGSPRSNGNTAKLAEAVLEGAEE-AGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEI-YEKLLEADG 78 (207)
T ss_pred CeeeEEEecCCCCCcHHHHHHHHHHHHHH-cCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHH-HHHHHHCCE
Confidence 5777777775 69999999999999999 8999999999987433333322 377777778887 899999999
Q ss_pred EEEeccccCCCchHHHHHHHHh-hhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCcc
Q 040588 119 LLFGFPTRFGSMASQMKAFFDS-TFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEM 197 (252)
Q Consensus 119 II~gsP~y~g~~~~~~k~fld~-l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~ 197 (252)
||||||||+|+++++||.|||| +..+|....+++|+++.|++.+..+|+++.++..+...+.+++|.+++.++.. .+
T Consensus 79 iI~gsPvy~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v~~~~~~--~~ 156 (207)
T COG0655 79 IIFGSPVYFGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVVGLGYGN--AV 156 (207)
T ss_pred EEEeCCeecCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEecccccc--cc
Confidence 9999999999999999999999 77788777899999999999998888887789999999999999999876652 11
Q ss_pred cc--ccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 040588 198 FG--MDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFS 245 (252)
Q Consensus 198 ~~--~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l~ 245 (252)
.. .+....+.++|....+...-.++.+.+++.++.+++++++.+.+++
T Consensus 157 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T COG0655 157 VGSGVDLIKGGDPYGAVTQDEEDLSRPSALGLKMARLLGKIVAENAAKLK 206 (207)
T ss_pred cCcccccccCCCCcccceeccccccccchHHHHHHHHHHHHHHHHHHhhc
Confidence 11 1234567777776665422223777888889999998888877664
No 5
>PRK05569 flavodoxin; Provisional
Probab=99.94 E-value=1.2e-25 Score=178.77 Aligned_cols=138 Identities=25% Similarity=0.339 Sum_probs=115.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|+||+|||+|++|||++||++|++++++ .|++++++++.+. ...++.+||+|||||||
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~-~g~~v~~~~~~~~---------------------~~~~~~~~d~iilgsPt 58 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKE-AGAEVTIKHVADA---------------------KVEDVLEADAVAFGSPS 58 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHh-CCCeEEEEECCcC---------------------CHHHHhhCCEEEEECCC
Confidence 5799999999999999999999999988 7899999998764 24578899999999999
Q ss_pred cCCCc--hHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCC
Q 040588 126 RFGSM--ASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSL 203 (252)
Q Consensus 126 y~g~~--~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~ 203 (252)
|++++ |+.++.|+|++... .++||++++|+|+||..+. ++..+.+.+...|+.+++. +.
T Consensus 59 y~~~~~~~~~~~~~~~~l~~~----~~~~K~v~~f~t~g~~~~~---~~~~~~~~l~~~g~~~~~~-~~----------- 119 (141)
T PRK05569 59 MDNNNIEQEEMAPFLDQFKLT----PNENKKCILFGSYGWDNGE---FMKLWKDRMKDYGFNVIGD-LA----------- 119 (141)
T ss_pred cCCCcCChHHHHHHHHHhhcc----CcCCCEEEEEeCCCCCCCc---HHHHHHHHHHHCCCeEeee-EE-----------
Confidence 99885 36899999998642 4689999999999985332 4567778888899998764 21
Q ss_pred CCCCccccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 040588 204 RGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMA 238 (252)
Q Consensus 204 ~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la 238 (252)
+ +..|+++++++|+++|++|+
T Consensus 120 ----------~----~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 120 ----------V----NESPNKEELNSAKELGKKLA 140 (141)
T ss_pred ----------E----ccCCCHHHHHHHHHHHHHHh
Confidence 1 24699999999999999986
No 6
>PRK06756 flavodoxin; Provisional
Probab=99.94 E-value=2.7e-25 Score=178.35 Aligned_cols=146 Identities=20% Similarity=0.232 Sum_probs=122.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||||+|||+|++|||++||+.|++++++ .|++++++++.+.. ...++.+||+||||+|+
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~-~g~~v~~~~~~~~~--------------------~~~~~~~~d~vi~gspt 59 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRE-TENEIEVIDIMDSP--------------------EASILEQYDGIILGAYT 59 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhh-cCCeEEEeehhccC--------------------CHHHHhcCCeEEEEeCC
Confidence 6899999999999999999999999988 89999999886531 14568899999999999
Q ss_pred cC-CCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCC
Q 040588 126 RF-GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLR 204 (252)
Q Consensus 126 y~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 204 (252)
|+ |.+|..++.|++.+.. ..++||++++|+++++..++...++..+.+.|...|+.+++.+..
T Consensus 60 ~~~g~~p~~~~~fl~~l~~----~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~------------ 123 (148)
T PRK06756 60 WGDGDLPDDFLDFYDAMDS----IDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLK------------ 123 (148)
T ss_pred CCCCCCcHHHHHHHHHHhc----CCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeE------------
Confidence 96 7788889999998754 267999999999977644445567889999999999999876432
Q ss_pred CCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040588 205 GGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIV 241 (252)
Q Consensus 205 ~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~ 241 (252)
+ +.+|+++++++++++|++|++.+
T Consensus 124 ---------~----~~~p~~~d~~~~~~~~~~~~~~~ 147 (148)
T PRK06756 124 ---------V----ELTPEDEDVEKCLQFGAEFVKHL 147 (148)
T ss_pred ---------E----ecCCCHHHHHHHHHHHHHHHHhc
Confidence 1 35799999999999999998753
No 7
>PRK05568 flavodoxin; Provisional
Probab=99.93 E-value=4.1e-25 Score=175.80 Aligned_cols=139 Identities=25% Similarity=0.326 Sum_probs=116.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|+|++|||+|++|||++||++|++++++ .|++++++++.+. ...++.+||.||||+|+
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~-~g~~v~~~~~~~~---------------------~~~~~~~~d~iilgsp~ 58 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKE-NGAEVKLLNVSEA---------------------SVDDVKGADVVALGSPA 58 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHH-CCCeEEEEECCCC---------------------CHHHHHhCCEEEEECCc
Confidence 6789999999999999999999999988 8999999998864 14578999999999999
Q ss_pred cCCCch--HHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCC
Q 040588 126 RFGSMA--SQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSL 203 (252)
Q Consensus 126 y~g~~~--~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~ 203 (252)
|+++++ +.++.|++++.. .+++|++++|+++||..+ .+...+...+...|+.+++.++.
T Consensus 59 y~~~~~~~~~~~~f~~~~~~-----~~~~k~~~~f~t~G~~~~---~~~~~~~~~l~~~g~~~~~~~~~----------- 119 (142)
T PRK05568 59 MGDEVLEEGEMEPFVESISS-----LVKGKKLVLFGSYGWGDG---EWMRDWVERMEGYGANLVNEGLI----------- 119 (142)
T ss_pred cCcccccchhHHHHHHHhhh-----hhCCCEEEEEEccCCCCC---hHHHHHHHHHHHCCCEEeCCcEE-----------
Confidence 999874 689999999753 468999999999988432 24667778888899999876432
Q ss_pred CCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 040588 204 RGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAA 239 (252)
Q Consensus 204 ~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~ 239 (252)
+ +..|+++++++|+++|++|++
T Consensus 120 ----------~----~~~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 120 ----------V----NNTPEGEGIEKCKALGEALAK 141 (142)
T ss_pred ----------E----ecCCCHHHHHHHHHHHHHHHh
Confidence 1 246999999999999999874
No 8
>PRK06703 flavodoxin; Provisional
Probab=99.91 E-value=1.5e-23 Score=168.78 Aligned_cols=148 Identities=21% Similarity=0.226 Sum_probs=122.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|||++|+|+|++|||+++|+.|++++.+ .|++++++++.+. ...++.++|.||||+||
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~viigspt 58 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDA-FDHEVVLQEMDGM---------------------DAEELLAYDGIILGSYT 58 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-cCCceEEEehhhC---------------------CHHHHhcCCcEEEEECC
Confidence 6899999999999999999999999988 8899999888764 13468899999999999
Q ss_pred c-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCC
Q 040588 126 R-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLR 204 (252)
Q Consensus 126 y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 204 (252)
| .|.+|..++.|++.+.. ..+++|++++|++++|..+....+...+.+.|...|+.+++....
T Consensus 59 ~~~g~~p~~~~~f~~~l~~----~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~------------ 122 (151)
T PRK06703 59 WGDGDLPYEAEDFHEDLEN----IDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLK------------ 122 (151)
T ss_pred CCCCcCcHHHHHHHHHHhc----CCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeE------------
Confidence 9 58888899999998753 257899999999987743333446777889999999999875432
Q ss_pred CCCccccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHh
Q 040588 205 GGSPYGAGVFSGDGTRKPT-ETELALAEHQGKYMAAIVKKF 244 (252)
Q Consensus 205 ~~~~~G~~~~~~~~~~~pd-e~~l~~a~~~g~~la~~~~~l 244 (252)
+ +..|+ ++++++|++++++|+++++++
T Consensus 123 ---------~----~~~p~~~~~~~~~~~~~~~~~~~~~~~ 150 (151)
T PRK06703 123 ---------I----ELAPETDEDVEKCSNFAIAFAEKFAQM 150 (151)
T ss_pred ---------E----ecCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 1 24575 799999999999999887765
No 9
>PRK06242 flavodoxin; Provisional
Probab=99.91 E-value=1.3e-23 Score=168.49 Aligned_cols=147 Identities=19% Similarity=0.217 Sum_probs=112.4
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 47 LKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 47 ~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||++|||+|+ +|||+++|+.|++++. ++++++.+. ...++.+||.||||+|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~------~~~~~i~~~---------------------~~~~~~~~d~ii~g~pv 53 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD------AEVIDPGDV---------------------NPEDLSEYDLIGFGSGI 53 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC------cEEecHHHC---------------------CcccHhHCCEEEEeCch
Confidence 7899999998 7999999999999984 356666542 13568899999999999
Q ss_pred cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCCC
Q 040588 126 RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRG 205 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~~ 205 (252)
|++++++.++.|++++. .++||++++|+|+||..++ .+..+...+...|+.+++..... +
T Consensus 54 y~~~~~~~~~~fl~~~~------~~~~k~~~~f~t~g~~~~~---~~~~l~~~l~~~g~~~~~~~~~~-----------g 113 (150)
T PRK06242 54 YFGKFHKSLLKLIEKLP------PVSGKKAFIFSTSGLPFLK---YHKALKKKLKEKGFEIVGEFSCK-----------G 113 (150)
T ss_pred hcCCcCHHHHHHHHhhh------hhcCCeEEEEECCCCCcch---HHHHHHHHHHHCCCEEEEEEecC-----------C
Confidence 99999999999999974 3579999999999986433 26778888899999998752211 1
Q ss_pred CCccccceecC-CCCCCCCHHHHHHHHHHHHHHHHH
Q 040588 206 GSPYGAGVFSG-DGTRKPTETELALAEHQGKYMAAI 240 (252)
Q Consensus 206 ~~~~G~~~~~~-~~~~~pde~~l~~a~~~g~~la~~ 240 (252)
...++...+.+ ..+.+|+++++++|+++|++|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~p~~~d~~~~~~~gk~l~~~ 149 (150)
T PRK06242 114 FDTFGPFKLIGGINKGHPNEKDLENAKEFAENLKKK 149 (150)
T ss_pred cccccchhhcCCccCCCcCHHHHHHHHHHHHHHhhc
Confidence 11122211111 234689999999999999999753
No 10
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.90 E-value=3.7e-23 Score=190.75 Aligned_cols=149 Identities=18% Similarity=0.250 Sum_probs=124.0
Q ss_pred CCCCCceEEEEEeCCchhHHHHHHHHHHhcc--ccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeE
Q 040588 42 STTGQLKIFIIFYSMYGHVEILARRMKKGVD--SIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGL 119 (252)
Q Consensus 42 ~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~--~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~I 119 (252)
.+..++||+|||+|++|||++||++|+++++ + .|++++++++.+..+ .++ ..++.+||+|
T Consensus 243 ~~~~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~-~g~~v~~~~~~~~~~----------------~~i-~~~~~~~d~i 304 (394)
T PRK11921 243 ANYQENQVTILYDTMWNSTRRMAEAIAEGIKKAN-KDVTVKLYNSAKSDK----------------NDI-ITEVFKSKAI 304 (394)
T ss_pred hcCCcCcEEEEEECCchHHHHHHHHHHHHHhhcC-CCCeEEEEECCCCCH----------------HHH-HHHHHhCCEE
Confidence 4456789999999999999999999999998 5 789999999987521 122 4567789999
Q ss_pred EEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCcccc
Q 040588 120 LFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFG 199 (252)
Q Consensus 120 I~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~ 199 (252)
|||||||++++.+.++.|++.+..+ .++||++++|+|+||. | .++..+.+.|...|+.+++.+..
T Consensus 305 i~GspT~~~~~~~~~~~~l~~l~~~----~~~~K~~a~FGsygw~-g---~a~~~~~~~l~~~g~~~v~~~~~------- 369 (394)
T PRK11921 305 LVGSSTINRGILSSTAAILEEIKGL----GFKNKKAAAFGSYGWS-G---ESVKIITERLKKAGFEIVNDGIR------- 369 (394)
T ss_pred EEECCCcCccccHHHHHHHHHhhcc----CcCCCEEEEEecCCCc-c---HHHHHHHHHHHHCCCEEccCcEE-------
Confidence 9999999999888999999988653 6899999999999984 2 25678889999999999875432
Q ss_pred ccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040588 200 MDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIV 241 (252)
Q Consensus 200 ~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~ 241 (252)
+ +..|+++++++|+++|++|++.+
T Consensus 370 --------------~----~~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 370 --------------E----LWNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred --------------E----EeCCCHHHHHHHHHHHHHHHHhh
Confidence 1 24699999999999999998654
No 11
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.90 E-value=8.9e-23 Score=161.33 Aligned_cols=138 Identities=23% Similarity=0.317 Sum_probs=114.7
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCC
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFG 128 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g 128 (252)
|+|||+|++|||+++|++|++++.+ .|++++++++.+. ...++.++|.||||+|||++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~iilgspty~~ 58 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKE-AGAEVDLLEVADA---------------------DAEDLLSYDAVLLGCSTWGD 58 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHh-cCCeEEEEEcccC---------------------CHHHHhcCCEEEEEcCCCCC
Confidence 6899999999999999999999988 8999999998764 24567889999999999985
Q ss_pred C-ch-HHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCCCC
Q 040588 129 S-MA-SQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGG 206 (252)
Q Consensus 129 ~-~~-~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~ 206 (252)
. +| +.++.|++++.. ..++||++++|+++||... ...+...+...|..+|+.++..+..
T Consensus 59 g~~p~~~~~~f~~~l~~----~~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~-------------- 119 (140)
T TIGR01753 59 EDLEQDDFEPFFEELED----IDLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLK-------------- 119 (140)
T ss_pred CCCCcchHHHHHHHhhh----CCCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCee--------------
Confidence 4 76 799999999764 2478999999999887532 3457788889999999999875432
Q ss_pred CccccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 040588 207 SPYGAGVFSGDGTRKPTETELALAEHQGKYMA 238 (252)
Q Consensus 207 ~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la 238 (252)
+ +..|++++++++++++++|+
T Consensus 120 -------~----~~~p~~~~~~~~~~~~~~l~ 140 (140)
T TIGR01753 120 -------V----DGDPEEEDLDKCREFAKDLA 140 (140)
T ss_pred -------e----ecCCCHHHHHHHHHHHHHhC
Confidence 1 24699999999999999874
No 12
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.89 E-value=1.4e-22 Score=190.77 Aligned_cols=148 Identities=20% Similarity=0.291 Sum_probs=122.5
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHHHhccccC--CceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEE
Q 040588 43 TTGQLKIFIIFYSMYGHVEILARRMKKGVDSID--GVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLL 120 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~--G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II 120 (252)
...++||+|||+|++|||++||++|++++++ . |++++++++.+..+ .++ ..++.+||+||
T Consensus 248 ~~~~~kv~IvY~S~~GnTe~mA~~ia~gl~~-~g~gv~v~~~~v~~~~~----------------~~i-~~~~~~ad~vi 309 (479)
T PRK05452 248 DYQEDRITIFYDTMSNNTRMMADAIAQGIAE-VDPRVAVKIFNVARSDK----------------NEI-LTNVFRSKGVL 309 (479)
T ss_pred ccCcCcEEEEEECCccHHHHHHHHHHHHHHh-hCCCceEEEEECCCCCH----------------HHH-HhHHhhCCEEE
Confidence 3457899999999999999999999999986 4 67899999987521 122 45667899999
Q ss_pred EeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccc
Q 040588 121 FGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGM 200 (252)
Q Consensus 121 ~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~ 200 (252)
||||||++.+.++|+.|++.+..+ .++||++++|+||||.+ + ++..+.+.|...|+.++. ++.
T Consensus 310 lGspT~~~~~~p~~~~fl~~l~~~----~l~gK~~~vFGSygw~g-~---a~~~~~~~l~~~g~~~~~-~l~-------- 372 (479)
T PRK05452 310 VGSSTMNNVMMPKIAGLLEEITGL----RFRNKRASAFGSHGWSG-G---AVDRLSTRLQDAGFEMSL-SLK-------- 372 (479)
T ss_pred EECCccCCcchHHHHHHHHHhhcc----CcCCCEEEEEECCCcCc-H---HHHHHHHHHHHCCCEEec-cEE--------
Confidence 999999999999999999998753 58999999999999942 2 467888889999999864 222
Q ss_pred cCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040588 201 DSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVK 242 (252)
Q Consensus 201 ~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~ 242 (252)
+ +..|+++++++|++||++|++.++
T Consensus 373 -------------~----~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 373 -------------A----KWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred -------------E----EecCCHHHHHHHHHHHHHHHHHHh
Confidence 1 356999999999999999998776
No 13
>PRK07308 flavodoxin; Validated
Probab=99.89 E-value=4.6e-22 Score=159.28 Aligned_cols=144 Identities=17% Similarity=0.102 Sum_probs=117.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|+|+.|+|+|++|||+++|++|++++.+ .|++++++++.+. ...++.++|.||||+||
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~-~g~~~~~~~~~~~---------------------~~~~l~~~d~vi~g~~t 58 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRE-LGHDVDVDECTTV---------------------DASDFEDADIAIVATYT 58 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHh-CCCceEEEecccC---------------------CHhHhccCCEEEEEeCc
Confidence 5689999999999999999999999988 7889998888764 13567899999999999
Q ss_pred cC-CCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCC
Q 040588 126 RF-GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLR 204 (252)
Q Consensus 126 y~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 204 (252)
|. |.+|..++.|++.+... .++||++++|+++....++...+...+.+.|...|+.++.....
T Consensus 59 ~g~G~~p~~~~~fl~~l~~~----~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~------------ 122 (146)
T PRK07308 59 YGDGELPDEIVDFYEDLADL----DLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVK------------ 122 (146)
T ss_pred cCCCCCCHHHHHHHHHHhcC----CCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEE------------
Confidence 97 88999999999998653 57899999999954333333456778888888899988765332
Q ss_pred CCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 040588 205 GGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAI 240 (252)
Q Consensus 205 ~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~ 240 (252)
+ +..|++++++.|+++|++|++.
T Consensus 123 ---------~----~~~p~~~~~~~~~~~~~~l~~~ 145 (146)
T PRK07308 123 ---------V----DLAAEDEDIERLEAFAEELAAK 145 (146)
T ss_pred ---------E----eCCCCHHHHHHHHHHHHHHHhh
Confidence 1 3469999999999999999753
No 14
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=99.89 E-value=1.7e-22 Score=162.37 Aligned_cols=139 Identities=27% Similarity=0.375 Sum_probs=112.0
Q ss_pred ceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcc-cC-CCCCCCCcccchhhhhccCeEEEe
Q 040588 47 LKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQM-KV-PQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 47 ~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~-~~-~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
|||+||++|+ .|||+++++++++.+++ .|++++++++.+. +..++.+. .| +...|++.++ .+++.+||+|||+
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~-~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~-~~~l~~aD~iI~~ 77 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEE-AGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQEL-YDKLKEADGIIFA 77 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHH-TTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHH-HHHHHHSSEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHH-cCCEEEEEecccc-chhhcccccccccCCcHHHHHH-HhceecCCeEEEe
Confidence 7999999996 59999999999999998 7999999999997 33344322 22 2234566666 7999999999999
Q ss_pred ccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 040588 123 FPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 123 sP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
||+|++++|+.||+||||+.. +....+++|++++++++|+..++ ..+..++...+..+||.+++..
T Consensus 78 sP~y~~~~s~~lK~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~~~ 143 (152)
T PF03358_consen 78 SPVYNGSVSGQLKNFLDRLSC-WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVPSG 143 (152)
T ss_dssp EEEBTTBE-HHHHHHHHTHHH-THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEECCS
T ss_pred ecEEcCcCChhhhHHHHHhcc-ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcCCc
Confidence 999999999999999999864 33457899999999887764444 4578889999999999999874
No 15
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=99.85 E-value=5e-20 Score=153.92 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=125.6
Q ss_pred ceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 47 LKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 47 ~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
|||++|++|+ .++|.++++.+++.+.+ .|++++++++.+..+..|.. |....+++..+ .+.+.+||+|||+||
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~-~g~ev~~idL~~l~~~~~~~---~~~~~~~~~~~-~~~i~~AD~iIi~tP 75 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNG-LGVEVYHWNLQNFAPEDLLY---ARFDSPALKTF-TEQLAQADGLIVATP 75 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHh-CCCEEEEEEccCCChHHHHh---ccCCCHHHHHH-HHHHHHCCEEEEECC
Confidence 6999999997 58999999999999998 79999999999764444443 22212344444 688999999999999
Q ss_pred ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHH-HHHHHHHHHcCcEEecCCccCCCccccccCC
Q 040588 125 TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTA-WTAITQLAHHGMVYVPIGYTFGTEMFGMDSL 203 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l-~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~ 203 (252)
+||+++|+.+|+|||++.. ..|.||++++++++|.. ++. ..+ ..++..+...|+.+++.+.... +
T Consensus 76 ~Y~~s~pg~LKn~iD~l~~----~~l~~K~v~iiat~G~~-~~~-~~~~~~lr~~l~~l~a~~~~~~~~~~------~-- 141 (191)
T PRK10569 76 VYKASFSGALKTLLDLLPE----RALEHKVVLPLATGGSV-AHM-LAVDYALKPVLSALKAQEILHGVFAD------D-- 141 (191)
T ss_pred ccCCCCCHHHHHHHHhCCh----hhhCCCEEEEEEecCCc-hhH-HHHHHHHHHHHHHcCCeecCceEEEe------c--
Confidence 9999999999999999853 46899999999987653 332 344 4667788888988776543210 0
Q ss_pred CCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040588 204 RGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKK 243 (252)
Q Consensus 204 ~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~ 243 (252)
.... .+ +.+...|++..++.+.+.+++++.+..
T Consensus 142 ---~~~~--~~--d~~~~~d~~~~~rl~~~~~~~~~~~~~ 174 (191)
T PRK10569 142 ---SQVI--DY--HHQPQFTPNLQTRLDEALETFWQALHR 174 (191)
T ss_pred ---hhhh--cc--ccccccCHHHHHHHHHHHHHHHHHHcc
Confidence 0000 01 122345899999999999999877654
No 16
>PRK09267 flavodoxin FldA; Validated
Probab=99.84 E-value=1.3e-19 Score=148.46 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=113.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||||+|+|+|.+|||+++|+.|++.+.+ .+++++++.+. ...++.+||.||||+||
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~---~~~~~~~~~~~---------------------~~~~l~~~d~vi~g~pt 56 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK---DVADVVDIAKA---------------------SKEDFEAYDLLILGIPT 56 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC---CceEEEEhhhC---------------------CHhhHhhCCEEEEEecC
Confidence 6899999999999999999999999964 36788887653 13568899999999999
Q ss_pred cC-CCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCCh---HHHHHHHHHHHHHcCcEEecC----CccCCCcc
Q 040588 126 RF-GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQ---ETTAWTAITQLAHHGMVYVPI----GYTFGTEM 197 (252)
Q Consensus 126 y~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~---~~~l~~l~~~l~~~G~~vv~~----~~~~~~~~ 197 (252)
|+ |.+|+.++.|++++.. ..++||++++|++++.. +.. ...+..+.+.+.++|+.+++. +|.+
T Consensus 57 ~~~G~~~~~~~~fl~~~~~----~~l~~k~vaifg~g~~~-~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~---- 127 (169)
T PRK09267 57 WGYGELQCDWDDFLPELEE----IDFSGKKVALFGLGDQE-DYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTF---- 127 (169)
T ss_pred cCCCCCCHHHHHHHHHHhc----CCCCCCEEEEEecCCCC-cchHHHHHHHHHHHHHHHHCCCEEECccCCCCccc----
Confidence 95 8889999999998743 26789999999986542 222 345777888899999999987 4432
Q ss_pred ccccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 040588 198 FGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAA 239 (252)
Q Consensus 198 ~~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~ 239 (252)
+...+++.+.++|.. . +.+..++..+ ++.+++.+.|..
T Consensus 128 ~~~~~~~~~~~~g~~-~--d~~~~~~~td-~~i~~w~~~i~~ 165 (169)
T PRK09267 128 EASKAVDDGKFVGLA-L--DEDNQSELTD-ERIEAWVKQIKP 165 (169)
T ss_pred cccceeeCCEEEEEE-e--cCCCchhhhH-HHHHHHHHHHHH
Confidence 111233445555543 2 2333455555 666666666553
No 17
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.83 E-value=7.5e-20 Score=165.20 Aligned_cols=147 Identities=25% Similarity=0.373 Sum_probs=123.5
Q ss_pred CCCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE
Q 040588 42 STTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 42 ~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
.++...||+|+|.|++|||++||++|++++.+ .|++|+++++.+. +.+++ .+++.+|++||+
T Consensus 242 ~~~~~~~V~l~Y~smyg~T~~ma~aiaegl~~-~gv~v~~~~~~~~----------------~~~eI-~~~i~~a~~~vv 303 (388)
T COG0426 242 EGQPKGKVDLIYDSMYGNTEKMAQAIAEGLMK-EGVDVEVINLEDA----------------DPSEI-VEEILDAKGLVV 303 (388)
T ss_pred ccCCcceEEEEEecccCCHHHHHHHHHHHhhh-cCCceEEEEcccC----------------CHHHH-HHHHhhcceEEE
Confidence 33444489999999999999999999999999 9999999999875 34556 789999999999
Q ss_pred eccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCcccccc
Q 040588 122 GFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMD 201 (252)
Q Consensus 122 gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~ 201 (252)
||||+++.+++++..+|-.+..+ ..++|.+++|+|+||.+ + ++..+.+.|...|+.+....+.
T Consensus 304 GsPT~~~~~~p~i~~~l~~v~~~----~~~~k~~~vfgS~GW~g-~---av~~i~~~l~~~g~~~~~~~i~--------- 366 (388)
T COG0426 304 GSPTINGGAHPPIQTALGYVLAL----APKNKLAGVFGSYGWSG-E---AVDLIEEKLKDLGFEFGFDGIE--------- 366 (388)
T ss_pred ecCcccCCCCchHHHHHHHHHhc----cCcCceEEEEeccCCCC-c---chHHHHHHHHhcCcEEeccceE---------
Confidence 99999999999999999887653 67889999999999953 3 4567788888889988654322
Q ss_pred CCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 040588 202 SLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAA 239 (252)
Q Consensus 202 ~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~ 239 (252)
+ +.+|+++++++|+++|+.||+
T Consensus 367 ------------v----k~~P~~~~l~~c~e~g~~la~ 388 (388)
T COG0426 367 ------------V----KFRPTEEDLKKCEEAGRDLAQ 388 (388)
T ss_pred ------------E----EecCCHHHHHHHHHHHHHhcC
Confidence 1 468999999999999999874
No 18
>PRK00170 azoreductase; Reviewed
Probab=99.79 E-value=1.3e-18 Score=146.04 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=101.1
Q ss_pred CceEEEEEeCC--c-hhHHHHHHHHHHhccccC--CceEEEEECCCCC-CH---HHHhc-ccCC---C-----CCCCCcc
Q 040588 46 QLKIFIIFYSM--Y-GHVEILARRMKKGVDSID--GVEGVLYRVPETL-PA---EVLEQ-MKVP---Q-----KGIEVPV 107 (252)
Q Consensus 46 ~~kIlIIy~S~--~-GnT~~la~~i~~~l~~~~--G~ev~l~~l~~~~-p~---~~~~~-~~~~---~-----~~d~~~~ 107 (252)
|||||+|++|+ . |+|.++++.+++++++ . |.++++++|.+.. |. .++.+ ..+. . ..+++.+
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~-~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 79 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKE-AHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDE 79 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 78999999996 5 9999999999999987 6 8899999998763 31 11111 1111 0 0234555
Q ss_pred cchhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhh-----h----hccCCCCcEEEEEeeCCCCCC--hHHHHHHHH
Q 040588 108 IAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLW-----E----QQRLAGVPAGFFVSTGTQGGG--QETTAWTAI 176 (252)
Q Consensus 108 ~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~-----~----~~~l~gK~~~if~s~G~~~g~--~~~~l~~l~ 176 (252)
+ .++|.+||+|||+||+||+++|+.||+||||+.... . .+.++||++.+++++|+.... .......+.
T Consensus 80 l-~~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~ 158 (201)
T PRK00170 80 L-LEEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLK 158 (201)
T ss_pred H-HHHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHH
Confidence 5 788999999999999999999999999999975321 0 135799999999987753221 133445566
Q ss_pred HHHHHcCcEEec
Q 040588 177 TQLAHHGMVYVP 188 (252)
Q Consensus 177 ~~l~~~G~~vv~ 188 (252)
..+...|+..+.
T Consensus 159 ~~~~~~G~~~~~ 170 (201)
T PRK00170 159 TFLGFIGITDVE 170 (201)
T ss_pred HHHHhcCCCceE
Confidence 666667877654
No 19
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=99.79 E-value=2.2e-18 Score=141.91 Aligned_cols=169 Identities=17% Similarity=0.131 Sum_probs=117.3
Q ss_pred eEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCC-CCCCCcccchhhhhccCeEEEecc
Q 040588 48 KIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQ-KGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 48 kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~-~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
||++|.+|+ .|+|.++++.+++.+.+..|++++++++.+..| |+....|.. ..+++..+ .+.+.+||+|||+||
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~--~~~~~~~~~~~~~~~~~~-~~~i~~AD~iIi~tP 77 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLADLAP--SLGGALWRSQLPPDAERI-LQAIESADLLVVGSP 77 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcCh--hhccccccCCCCHHHHHH-HHHHHHCCEEEEECC
Confidence 799999996 699999999999998532588999999987533 222111111 12334444 788999999999999
Q ss_pred ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCC
Q 040588 125 TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLR 204 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 204 (252)
+||+++|+.||+|||++.. ..|.||++++++++|...++ ......+...+...|+.+++.....
T Consensus 78 ~Y~~s~~~~LKn~lD~~~~----~~l~~K~~~~v~~~g~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~----------- 141 (174)
T TIGR03566 78 VYRGSYTGLFKHLFDLVDP----NALIGKPVLLAATGGSERHA-LMVEHQLRPLFGFFQALTLPTGVYA----------- 141 (174)
T ss_pred cCcCcCcHHHHHHHHhcCH----hHhCCCEEEEEEecCCccch-HHHHHHHHHHHHHhCcccccceEEE-----------
Confidence 9999999999999999753 36899999988886653322 2233446667777787766532110
Q ss_pred CCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040588 205 GGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVK 242 (252)
Q Consensus 205 ~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~ 242 (252)
....+. ++. ..|++..++++.+.+.+++.+.
T Consensus 142 -----~~~~~~-~g~-l~d~~~~~~l~~~~~~~~~~~~ 172 (174)
T TIGR03566 142 -----SDADFA-DYR-LASEALRARIALAVDRAAPLLA 172 (174)
T ss_pred -----Ehhhhc-ccc-ccCHHHHHHHHHHHHHHHHHhc
Confidence 000121 222 3578888888888888887764
No 20
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=99.79 E-value=2.9e-18 Score=140.88 Aligned_cols=167 Identities=16% Similarity=0.117 Sum_probs=114.4
Q ss_pred eEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 48 KIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 48 kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||++|.+|+ .++|.++++.+.+.+++ .|.+++++++.+.....|.. |....+++..+ .+.+.+||+|||+||+
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~-~~~~~~~idl~~l~~~~~~~---~~~~~~~~~~l-~~~i~~AD~iI~~sP~ 75 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQE-QGVEVDHLSVRDLPAEDLLF---ARFDSPAIKAA-TAQVAQADGVVVATPV 75 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHH-CCCeEEEEEecCCChHHhhh---cCCCCHHHHHH-HHHHHHCCEEEEECCc
Confidence 699999996 68999999999999987 78899999998753222222 22122345554 7889999999999999
Q ss_pred cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHH-HHHHHHHHHcCcEEecCCccCCCccccccCCC
Q 040588 126 RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTA-WTAITQLAHHGMVYVPIGYTFGTEMFGMDSLR 204 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l-~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 204 (252)
||+++|+.+|+|||++.. ..+.+|++++++++|.. +... .+ ..|...|...|+.++...+.....
T Consensus 76 Y~~sip~~LK~~iD~~~~----~~l~~K~v~~~~~gg~~-~~~~-~~~~~l~~~l~~l~~~~~~~~v~~~~~-------- 141 (171)
T TIGR03567 76 YKASYSGVLKALLDLLPQ----RALRGKVVLPIATGGSI-AHLL-AIDYALKPVLSALGARHILPGVFALDS-------- 141 (171)
T ss_pred ccCCCCHHHHHHHHhCCh----hhhCCCEEEEEEcCCch-hHHH-HHHHHHHHHHHHcCCccccceEEEEhh--------
Confidence 999999999999999853 36899999988776543 2222 23 356777878888544332211000
Q ss_pred CCCccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 040588 205 GGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAA 239 (252)
Q Consensus 205 ~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~ 239 (252)
...+..+|....|++.++++++++++++.
T Consensus 142 ------~~~~d~~g~~~~d~~~~~~l~~~~~~~~~ 170 (171)
T TIGR03567 142 ------QIERDEDGTLQLDEEIKERLDEALEDLVQ 170 (171)
T ss_pred ------HhccccCCccccCHHHHHHHHHHHHHHHh
Confidence 00121122211577778888888877753
No 21
>PRK09271 flavodoxin; Provisional
Probab=99.78 E-value=4.4e-18 Score=138.38 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=103.0
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|||+|+|+|++|||++||+.|++++++ .|++++++++.+.. +..+ ..++.++|+||||||||
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~-~g~~v~~~~~~~~~----------------~~~~-~~~~~~~d~vilgt~T~ 62 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEE-AGHEVDWVETDVQT----------------LAEY-PLDPEDYDLYLLGTWTD 62 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHh-CCCeeEEEeccccc----------------cccc-ccCcccCCEEEEECccc
Confidence 699999999999999999999999988 89999888876531 1122 34677899999999999
Q ss_pred CCC-chHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCC--hHHHHHHHHHHHHHcCcEEecCCccCCCccccccCC
Q 040588 127 FGS-MASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGG--QETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSL 203 (252)
Q Consensus 127 ~g~-~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~--~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~ 203 (252)
+++ +|..++.|++.+... ..++|++++|++++...++ .-.+...+...|... + ..+.
T Consensus 63 ~~G~~p~~~~~f~~~l~~~----~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-~----~~l~----------- 122 (160)
T PRK09271 63 NAGRTPPEMKRFIAELAET----IGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-Y----PRLK----------- 122 (160)
T ss_pred CCCcCCHHHHHHHHHHHHH----hccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-C----Ccee-----------
Confidence 644 577899999988642 3478999999997432121 113556666665421 1 1111
Q ss_pred CCCCccccceecCCCCCCCCH-HHHHHHHHHHHHHHHHH
Q 040588 204 RGGSPYGAGVFSGDGTRKPTE-TELALAEHQGKYMAAIV 241 (252)
Q Consensus 204 ~~~~~~G~~~~~~~~~~~pde-~~l~~a~~~g~~la~~~ 241 (252)
+ +..|++ .|++.++++++++++.+
T Consensus 123 ----------~----~~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 123 ----------I----EQMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred ----------e----ecCCccchhHHHHHHHHHHHHHHh
Confidence 1 234654 57899999999988776
No 22
>PRK01355 azoreductase; Reviewed
Probab=99.77 E-value=7.3e-18 Score=141.78 Aligned_cols=142 Identities=15% Similarity=0.120 Sum_probs=103.2
Q ss_pred CceEEEEEeCCc----hhHHHHHHHHHHhcccc-CCceEEEEECCCCCCHHHHh---cccCCCCCCCCcccchhhhhccC
Q 040588 46 QLKIFIIFYSMY----GHVEILARRMKKGVDSI-DGVEGVLYRVPETLPAEVLE---QMKVPQKGIEVPVIAVDDLVHAD 117 (252)
Q Consensus 46 ~~kIlIIy~S~~----GnT~~la~~i~~~l~~~-~G~ev~l~~l~~~~p~~~~~---~~~~~~~~d~~~~~~~~~l~~aD 117 (252)
|||||+|.+|+. |+|.++++++++++++. .+.++++++|.+...+.|+. ...|....+++..+ .+.+.+||
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~AD 79 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKY-INQLKSVD 79 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHH-HHHHHhCC
Confidence 789999999974 88999999999999861 25789999998763222221 11233334555555 78999999
Q ss_pred eEEEeccccCCCchHHHHHHHHhhhhh---h-----h----hccCCCCcEEEEEeeCCCCCCh--HHHHHHHHHHHHHcC
Q 040588 118 GLLFGFPTRFGSMASQMKAFFDSTFHL---W-----E----QQRLAGVPAGFFVSTGTQGGGQ--ETTAWTAITQLAHHG 183 (252)
Q Consensus 118 ~II~gsP~y~g~~~~~~k~fld~l~~~---~-----~----~~~l~gK~~~if~s~G~~~g~~--~~~l~~l~~~l~~~G 183 (252)
+|||+||+||+++|++||+||||+... + . .+.++||++.+++|+|...+.. ......+...+...|
T Consensus 80 ~iV~~sP~y~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 80 KVVISCPMTNFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEEcCccccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 999999999999999999999997531 0 0 1347899999999988643222 234555666777778
Q ss_pred cEEec
Q 040588 184 MVYVP 188 (252)
Q Consensus 184 ~~vv~ 188 (252)
+..+.
T Consensus 160 ~~~~~ 164 (199)
T PRK01355 160 AKVVD 164 (199)
T ss_pred CCcee
Confidence 77654
No 23
>PRK12359 flavodoxin FldB; Provisional
Probab=99.76 E-value=6.2e-17 Score=132.82 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=93.2
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|||+|+|+|.+|||+.+|+.|++.+.. ..++++++.+. ...++.+||.||||+|||
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~---~~v~v~~i~~~---------------------~~~~l~~yD~iIlG~pTw 56 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGE---ELVDLHNLKDD---------------------PPKLMEQYDVLILGIPTW 56 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCC---CeEEEEEcccC---------------------ChhHHccCCEEEEEeccc
Confidence 799999999999999999999999843 24788888764 256788999999999998
Q ss_pred -CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCC-CCC-hHHHHHHHHHHHHHcCcEEecC
Q 040588 127 -FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQ-GGG-QETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 127 -~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~-~g~-~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
.|.++..+..|++.+.. ..|+||++++|+++.+. .+. ...++..+.+.|...|..+++.
T Consensus 57 ~~Gel~~d~~~~~~~l~~----~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~ 118 (172)
T PRK12359 57 DFGEIQEDWEAVWDQLDD----LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGY 118 (172)
T ss_pred CCCcCcHHHHHHHHHHhh----CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEee
Confidence 67788899999988754 36899999999987652 222 1345678888998899999985
No 24
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.76 E-value=3e-17 Score=134.42 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=92.5
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc-
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR- 126 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y- 126 (252)
||+|+|+|.+|||+++|++|++.+.+ .+++++++.+. ...++.++|.||||+|||
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~---~~~~i~~~~~~---------------------~~~~l~~~d~ii~gspty~ 56 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE---DDVDVFNIAKA---------------------SKEDLNAYDKLILGTPTWG 56 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC---CceEEEEcccC---------------------CHhHHhhCCEEEEEecCCC
Confidence 68999999999999999999999964 35788888764 145788999999999999
Q ss_pred CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCC-CC-ChHHHHHHHHHHHHHcCcEEecC
Q 040588 127 FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQ-GG-GQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 127 ~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~-~g-~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
+|.+|..++.|++.+.. ..++||++++|++++.. .+ ....++..+.+.|...|+.+++.
T Consensus 57 ~g~~p~~~~~fl~~l~~----~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~ 117 (167)
T TIGR01752 57 VGELQEDWEDFLPTLEE----LDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGF 117 (167)
T ss_pred CCcCcHHHHHHHHHhhc----CCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEce
Confidence 67788899999998753 25789999999986542 11 22345788889999999999986
No 25
>PRK09739 hypothetical protein; Provisional
Probab=99.75 E-value=3.5e-18 Score=143.63 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=88.6
Q ss_pred CCceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcc--------cCCCCCCCCcccchhhhh
Q 040588 45 GQLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQM--------KVPQKGIEVPVIAVDDLV 114 (252)
Q Consensus 45 ~~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~--------~~~~~~d~~~~~~~~~l~ 114 (252)
.|||||+|++|+ .|+|..+++.+++++++ .|.++++++|.+.....|..+. .|. ..+++..+ .+++.
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~-~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~-~~~l~ 78 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQE-RGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKR-YSPEVHQL-YSELL 78 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHH-CCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCC-CCHHHHHH-HHHHH
Confidence 489999999997 58899999999999998 7889999999875322232211 121 12344444 68899
Q ss_pred ccCeEEEeccccCCCchHHHHHHHHhhhhh-hh---hccCCCCcEEEEEeeCCC
Q 040588 115 HADGLLFGFPTRFGSMASQMKAFFDSTFHL-WE---QQRLAGVPAGFFVSTGTQ 164 (252)
Q Consensus 115 ~aD~II~gsP~y~g~~~~~~k~fld~l~~~-~~---~~~l~gK~~~if~s~G~~ 164 (252)
+||.|||++|+||+++|+.+|+|||++... |. ...+.+|++.++++.|+.
T Consensus 79 ~AD~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~ 132 (199)
T PRK09739 79 EHDALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGS 132 (199)
T ss_pred hCCEEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCC
Confidence 999999999999999999999999997421 11 134788998888876653
No 26
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.73 E-value=7.3e-17 Score=128.29 Aligned_cols=108 Identities=20% Similarity=0.159 Sum_probs=81.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEE-EEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGV-LYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~-l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||++|||+|.+|||++||+.|++.+.+ .|++++ ++++.+.. .. ..++.+||.||||+|+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~-~g~~v~~~~~~~~~~------------------~~-~~~~~~~d~iilgs~t 60 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQK-DGHEVDILHRIGTLA------------------DA-PLDPENYDLVFLGTWT 60 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhh-CCeeEEecccccccc------------------cC-cCChhhCCEEEEEcCe
Confidence 699999999999999999999999987 788877 44444310 01 3457789999999999
Q ss_pred c-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCC--hHHHHHHHHHHHHH
Q 040588 126 R-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGG--QETTAWTAITQLAH 181 (252)
Q Consensus 126 y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~--~~~~l~~l~~~l~~ 181 (252)
| +|.+|..++.|++.+. .++|++++|++++...++ .-.++..+.+.|..
T Consensus 61 ~~~g~~p~~~~~fl~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~ 112 (140)
T TIGR01754 61 WERGRTPDEMKDFIAELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGS 112 (140)
T ss_pred eCCCcCCHHHHHHHHHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcC
Confidence 8 6678889999999863 378999999998532221 12456677776643
No 27
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=99.72 E-value=5.1e-17 Score=131.55 Aligned_cols=117 Identities=19% Similarity=0.373 Sum_probs=71.6
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC--CCCHHHHhcccC------CC-CCCCCcccc--hhhhhcc
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE--TLPAEVLEQMKV------PQ-KGIEVPVIA--VDDLVHA 116 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~--~~p~~~~~~~~~------~~-~~d~~~~~~--~~~l~~a 116 (252)
|+||||||.+|||+++|+.|++.+. + ++++|.. ..|........+ .. .....|++. ..++.+|
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~g----a--di~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~Y 74 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTG----A--DIFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDY 74 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-------EEEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-
T ss_pred CEEEEEECCCchHHHHHHHHHHHHC----C--CEEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccC
Confidence 7999999999999999999998774 3 4455442 233200000000 01 112233332 3588999
Q ss_pred CeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHH
Q 040588 117 DGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQL 179 (252)
Q Consensus 117 D~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l 179 (252)
|.||||+|+||+++|++|..||++. .++||.++.|+|+|+. +...++..|.+.+
T Consensus 75 D~I~lG~PvW~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs--~~~~~~~~l~~~~ 128 (156)
T PF12682_consen 75 DTIFLGTPVWWGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGS--GFGNSLEDLKKLC 128 (156)
T ss_dssp SEEEEEEEEETTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS----CHHHHHHHHHH-
T ss_pred CEEEEechHHcCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCC--ChhHHHHHHHHHC
Confidence 9999999999999999999999985 5899999999998763 3345666676554
No 28
>PRK07116 flavodoxin; Provisional
Probab=99.69 E-value=1.3e-16 Score=129.69 Aligned_cols=121 Identities=16% Similarity=0.247 Sum_probs=78.4
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHH---Hhc-cc--CC-CCCCCCccc--chhhhhc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEV---LEQ-MK--VP-QKGIEVPVI--AVDDLVH 115 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~---~~~-~~--~~-~~~d~~~~~--~~~~l~~ 115 (252)
.|||++|||+|.+|||+++|+.|++.+.. .. .++.....+ +... ... .+ +. ......+.+ ...++.+
T Consensus 1 ~m~k~lIvY~S~tGnT~~iA~~Ia~~l~~-d~--~~i~~~~~y-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 76 (160)
T PRK07116 1 ANNKTLVAYFSATGTTKKVAEKLAEVTGA-DL--FEIKPEQPY-TAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAE 76 (160)
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHhcC-Ce--EEEeeCCCC-CcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHh
Confidence 37899999999999999999999999964 21 122222211 1000 000 00 00 000011111 1356889
Q ss_pred cCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHH
Q 040588 116 ADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQ 178 (252)
Q Consensus 116 aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~ 178 (252)
||.||||+|+|++++|+.++.|++++ .+.+|++++|+|+|+... ..+...+...
T Consensus 77 ~D~Iiig~Pv~~~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~~--g~~~~~~~~~ 130 (160)
T PRK07116 77 YDVIFLGFPIWWYVAPRIINTFLESY-------DFSGKTVIPFATSGGSGI--GNAEKELKKS 130 (160)
T ss_pred CCEEEEECChhccccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCCc--CcHHHHHHHH
Confidence 99999999999999999999999874 578999999999766432 2244555554
No 29
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=99.69 E-value=1.5e-15 Score=128.91 Aligned_cols=176 Identities=12% Similarity=0.084 Sum_probs=123.3
Q ss_pred CceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 46 QLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
++||++|.+|. ..+++++++++++.+.+ .|++++++++.+. |...... . .......+ .+.+.+||+|||+|
T Consensus 26 ~~kI~~I~GSlR~~S~n~~la~~~~~~~~~-~g~~v~~idl~~l-Pl~~~d~--~--~~p~v~~l-~~~v~~ADgvii~T 98 (219)
T TIGR02690 26 IPRILLLYGSLRERSYSRLLAEEAARLLGC-EGRETRIFDPPGL-PLPDAAH--A--DHPKVREL-RQLSEWSEGQVWCS 98 (219)
T ss_pred CCEEEEEECCCCCcchHHHHHHHHHHHHhh-cCCEEEEeCcccC-CCCCcCc--c--cCHHHHHH-HHHHHhCCEEEEeC
Confidence 57999999995 56789999999999987 6999999999764 2100000 0 00011122 56789999999999
Q ss_pred cccCCCchHHHHHHHHhhhhhhhh-ccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccC
Q 040588 124 PTRFGSMASQMKAFFDSTFHLWEQ-QRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDS 202 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~~~~-~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~ 202 (252)
|.|++++|+.+|++||.+...|.. ..|.+|++++++++|+. + ...++..|...|...++.+++....+.
T Consensus 99 PEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~-~-g~ra~~~LR~vl~~l~a~v~p~~v~i~-------- 168 (219)
T TIGR02690 99 PERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGS-Q-SFNAVNILRRLGRWMRMPTIPNQSSVA-------- 168 (219)
T ss_pred CccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcH-h-HHHHHHHHHHHHHHCCCccccchhhhh--------
Confidence 999999999999999998764431 24899999988765442 2 334678888899999999887632210
Q ss_pred CCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 040588 203 LRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFS 245 (252)
Q Consensus 203 ~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l~ 245 (252)
.....+..+|. ..|++..+....+.+.+.++++..+
T Consensus 169 ------~a~~~fd~~G~-l~d~~~~~~l~~~l~~~~~~~~~~~ 204 (219)
T TIGR02690 169 ------KAFDEFDEAGR-MKPSDYYDRVVDVMEELTKFTLLTR 204 (219)
T ss_pred ------hhHhhcCcCCC-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 00111222232 4677778888888888888776543
No 30
>PRK06934 flavodoxin; Provisional
Probab=99.69 E-value=1.4e-16 Score=135.18 Aligned_cols=123 Identities=15% Similarity=0.276 Sum_probs=85.0
Q ss_pred CCCceEEEEEeCCc------------------------hhHHHHHHHHHHhccccCCceEEEEECCCCCCH---HHHhcc
Q 040588 44 TGQLKIFIIFYSMY------------------------GHVEILARRMKKGVDSIDGVEGVLYRVPETLPA---EVLEQM 96 (252)
Q Consensus 44 ~~~~kIlIIy~S~~------------------------GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~---~~~~~~ 96 (252)
....||||+|+|+. |||+++|+.|++.+.. ++..+...+.++. .+....
T Consensus 33 ~~~~k~Lv~yfs~~~~~~~~~~~~~~~~s~~~~~~~~~GnTk~vAe~Ia~~~ga----Dl~eI~~~~~Y~~~yd~~~~~a 108 (221)
T PRK06934 33 RNARRVLIVYFSQPEDVKLEGVDGVSGASILQKNGEVLGSTQYVAQIIQEETGG----DLFRIETVKPYPRQHDPLLKYA 108 (221)
T ss_pred ccCCceEEEEEeccCCcccccccccccccccccCCCCCCHHHHHHHHHHHHHCC----CEEEEEEccccCCCCchhhhHH
Confidence 44579999999976 8999999999998743 4444444333221 122111
Q ss_pred cCCCCCCCCccc--chhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHH
Q 040588 97 KVPQKGIEVPVI--AVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWT 174 (252)
Q Consensus 97 ~~~~~~d~~~~~--~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~ 174 (252)
......+..|++ ...++.+||.|+||+|+||+.+|++|+.||++. .+.||.++.|+|+|+. +.+.++..
T Consensus 109 ~~E~~~~~~P~L~~~~~dl~~YD~I~IG~PIWwg~~P~~V~tFLe~~-------d~~GK~I~pF~T~ggs--g~g~s~~~ 179 (221)
T PRK06934 109 EQEVKEGGRPEMREKIQNLADYDQIFIGYPIWWYKMPMVMYSFFEQH-------DFSGKTLIPFTTHGGS--RFSDSLRE 179 (221)
T ss_pred HHhhhcCCCHHHHHHHHhHHhCCEEEEEcchhhccccHHHHHHHHhc-------CCCCCEEEEEEecCCC--CccchHHH
Confidence 111111223333 147899999999999999999999999999985 6899999999998653 33345666
Q ss_pred HHHHH
Q 040588 175 AITQL 179 (252)
Q Consensus 175 l~~~l 179 (252)
|.+.+
T Consensus 180 i~~l~ 184 (221)
T PRK06934 180 IKRLQ 184 (221)
T ss_pred HHHHc
Confidence 66554
No 31
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.69 E-value=1.4e-16 Score=131.67 Aligned_cols=88 Identities=20% Similarity=0.378 Sum_probs=77.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
||++|||+|.+|||+++|+.|++.+.+ |++++++++.+. ...++.+||.||||+|+|
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~--g~~v~~~~~~~~---------------------~~~~l~~yD~vIlGspi~ 57 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE--GIQCDVVNLHRI---------------------EEPDLSDYDRVVIGASIR 57 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC--CCeEEEEEhhhc---------------------CccCHHHCCEEEEECccc
Confidence 699999999999999999999999974 788999988763 134688999999999999
Q ss_pred CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeC
Q 040588 127 FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTG 162 (252)
Q Consensus 127 ~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G 162 (252)
+|.+++.++.|+++.. ..|++|++++|+++.
T Consensus 58 ~G~~~~~~~~fl~~~~-----~~l~~K~v~~F~v~l 88 (177)
T PRK11104 58 YGHFHSALYKFVKKHA-----TQLNQMPSAFFSVNL 88 (177)
T ss_pred cCCcCHHHHHHHHHHH-----HHhCCCeEEEEEech
Confidence 9999999999998864 268999999999864
No 32
>PRK13556 azoreductase; Provisional
Probab=99.67 E-value=6e-16 Score=130.98 Aligned_cols=142 Identities=11% Similarity=0.096 Sum_probs=99.0
Q ss_pred CceEEEEEeCC----chhHHHHHHHHHHhcccc-CCceEEEEECCCC-CCH-HH--Hh-c---c-cCCCC------CCCC
Q 040588 46 QLKIFIIFYSM----YGHVEILARRMKKGVDSI-DGVEGVLYRVPET-LPA-EV--LE-Q---M-KVPQK------GIEV 105 (252)
Q Consensus 46 ~~kIlIIy~S~----~GnT~~la~~i~~~l~~~-~G~ev~l~~l~~~-~p~-~~--~~-~---~-~~~~~------~d~~ 105 (252)
|||||+|++|+ .++|..+++++++.+++. .|.+|++++|.+. .|. .| .. + . .|... .++.
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 78999999996 378999999999999761 2789999999865 332 11 01 0 1 12211 1122
Q ss_pred cccchhhhhccCeEEEeccccCCCchHHHHHHHHhhhhh-h----h----hccCCCCcEEEEEeeCCCCC-C----hHHH
Q 040588 106 PVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHL-W----E----QQRLAGVPAGFFVSTGTQGG-G----QETT 171 (252)
Q Consensus 106 ~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~-~----~----~~~l~gK~~~if~s~G~~~g-~----~~~~ 171 (252)
..+ .+++.+||.|||++|.||+++|+.||+|||++... + . .+.+.+|++.+++++|+... + ....
T Consensus 81 ~~~-~~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKY-LNQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHH-HHHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 233 58899999999999999999999999999998643 1 1 13578999999988766431 1 1123
Q ss_pred HHHHHHHHHHcCcEEec
Q 040588 172 AWTAITQLAHHGMVYVP 188 (252)
Q Consensus 172 l~~l~~~l~~~G~~vv~ 188 (252)
...+...+...|+..+.
T Consensus 160 ~~~l~~il~~~G~~~~~ 176 (208)
T PRK13556 160 VKYVASMMGFFGVTNME 176 (208)
T ss_pred HHHHHHHHHhcCCCcee
Confidence 44666677777876654
No 33
>PRK09004 FMN-binding protein MioC; Provisional
Probab=99.63 E-value=7e-15 Score=117.84 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=95.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|+||+|+|+|.+|||+.+|+.|++.+.+ .|.++++++..+ .+++.++|.|||++||
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~-~g~~~~~~~~~~-----------------------~~~l~~~~~li~~~sT 56 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEE-AGFSTETLHGPL-----------------------LDDLSASGLWLIVTST 56 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHH-cCCceEEeccCC-----------------------HHHhccCCeEEEEECC
Confidence 6799999999999999999999999988 888888766532 4567789999999999
Q ss_pred c-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 040588 126 R-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 126 y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
| .|.+|...+.|++.+... ...++|+++++|+.+.+.....-.....+.+.|...|...+..
T Consensus 57 ~G~Ge~p~~~~~f~~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~ 119 (146)
T PRK09004 57 HGAGDLPDNLQPFFEELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGE 119 (146)
T ss_pred CCCCCCChhHHHHHHHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeec
Confidence 9 789999999999987541 2358999999999876643222235677888899999988754
No 34
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.62 E-value=1.3e-14 Score=116.79 Aligned_cols=148 Identities=22% Similarity=0.190 Sum_probs=104.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||||+|||+|.+|||+.||+.|++.+.+ .+.++++...... ....+.++|.+++|+|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~-~~~~~~~~~~~~~---------------------~~~~~~~~d~~~~g~~t 58 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGA-DGFEVDIDIRPGI---------------------KDDLLESYDELLLGTPT 58 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhcc-CCceEEEeecCCc---------------------chhhhccCCEEEEEeCC
Confidence 7999999999999999999999999998 7777744333321 12233689999999999
Q ss_pred cCCC-chHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCC-hHHHHHHHHHHHHHcCcEEecCCccCCCccccccCC
Q 040588 126 RFGS-MASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGG-QETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSL 203 (252)
Q Consensus 126 y~g~-~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~-~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~ 203 (252)
|..+ .+..+..|++.+.. ..+++|++++|+++.+.... --.....+...+...|...++..-.
T Consensus 59 ~~~ge~~~~~~~f~~~~~~----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~----------- 123 (151)
T COG0716 59 WGAGELPDDWYDFIEELEP----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILET----------- 123 (151)
T ss_pred CCCCcCCccHHHHHHHhcc----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccc-----------
Confidence 9654 56689999998875 36899999999984432222 1234566777777777533322100
Q ss_pred CCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 040588 204 RGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAI 240 (252)
Q Consensus 204 ~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~ 240 (252)
.+. .+ +..|++++.++++.+++++...
T Consensus 124 -----~~~-~~----~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 124 -----LGY-IF----DASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred -----cce-ec----cCCCCCccHHHHHHHHHHHHhh
Confidence 000 01 2358888999999999988753
No 35
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.61 E-value=2.2e-15 Score=120.28 Aligned_cols=87 Identities=21% Similarity=0.419 Sum_probs=72.1
Q ss_pred EEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCCC
Q 040588 50 FIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGS 129 (252)
Q Consensus 50 lIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g~ 129 (252)
||||+|.+|||+++|+.|++.+.+ . ++.+++.+.. . ...++.+||.||||+|+|.|.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~-~---~~~v~~~~~~------------------~-~~~~~~~yD~vi~gspiy~g~ 57 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGE-E---GELVDLEKVE------------------E-DEPDLSDYDAVIFGSPIYAGR 57 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhh-h---ccEEEHHhhh------------------h-cccccccCCEEEEEEEEECCc
Confidence 699999999999999999999986 3 3445554320 0 145789999999999999999
Q ss_pred chHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCC
Q 040588 130 MASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQ 164 (252)
Q Consensus 130 ~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~ 164 (252)
+++.++.|+++... .+++|++++|+++++.
T Consensus 58 ~~~~~~~fi~~~~~-----~l~~k~v~~f~~~~~~ 87 (143)
T PF12724_consen 58 IPGEMREFIKKNKD-----NLKNKKVALFSVGGSS 87 (143)
T ss_pred CCHHHHHHHHHHHH-----HHcCCcEEEEEEeCCC
Confidence 99999999998753 6789999999998874
No 36
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=99.59 E-value=4.1e-14 Score=114.82 Aligned_cols=146 Identities=19% Similarity=0.266 Sum_probs=94.7
Q ss_pred EEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCCC
Q 040588 50 FIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGS 129 (252)
Q Consensus 50 lIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g~ 129 (252)
+|+|+|.+|||++||++|++.+.. .+++.+.+. ...+.+||.|++|+++|.|+
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~-----~~~~~~~~~----------------------~~~~~~yD~i~lG~w~d~G~ 53 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA-----KDIVSVEEP----------------------PEDLEDYDLIFLGFWIDKGT 53 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----ceeEecccc----------------------ccCCCCCCEEEEEcCccCCC
Confidence 689999999999999999999953 466777653 22288999999999999999
Q ss_pred chHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHH---HHHHHHHHHHHcCcEEecCCccCCCcccccc-----
Q 040588 130 MASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQET---TAWTAITQLAHHGMVYVPIGYTFGTEMFGMD----- 201 (252)
Q Consensus 130 ~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~---~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~----- 201 (252)
++..++.||.+ ++||.+++|+|.|... ..+. .+..+...+ ..+..+++. |. |.+-+...
T Consensus 54 ~d~~~~~fl~~---------l~~KkV~lF~T~G~~~-~s~~~~~~~~~~~~~~-~~~~~~lg~-f~-CqGk~~~~~~e~~ 120 (160)
T PF12641_consen 54 PDKDMKEFLKK---------LKGKKVALFGTAGAGP-DSEYAKKILKNVEALL-PKGNEILGT-FM-CQGKMDPKVIEKY 120 (160)
T ss_pred CCHHHHHHHHH---------ccCCeEEEEEecCCCC-chHHHHHHHHHHHHhh-ccCCeecce-EE-eCCcCCHHHHHHH
Confidence 99999999986 4789999999987632 2221 233333333 345666664 22 22211100
Q ss_pred -CC-CCCCccccc--eecC--CCCCCCCHHHHHHHHHHHH
Q 040588 202 -SL-RGGSPYGAG--VFSG--DGTRKPTETELALAEHQGK 235 (252)
Q Consensus 202 -~~-~~~~~~G~~--~~~~--~~~~~pde~~l~~a~~~g~ 235 (252)
.. ......... .... ....+||++|++.|+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~a~~HPde~Dl~~a~~~~k 160 (160)
T PF12641_consen 121 KKMLPKNPPHAMTPERLARFDEAASHPDEEDLQNAKAFFK 160 (160)
T ss_pred HhccCCCCCCcccHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 00 000011000 0000 2346899999999988753
No 37
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=99.58 E-value=4.1e-15 Score=124.79 Aligned_cols=141 Identities=24% Similarity=0.294 Sum_probs=97.8
Q ss_pred ceEEEEEeCCc---hhHHHHHHHHHHhccccCC-ceEEEEECCCC-CC---HHHHhc---ccCCCCCCCCcccchhhhhc
Q 040588 47 LKIFIIFYSMY---GHVEILARRMKKGVDSIDG-VEGVLYRVPET-LP---AEVLEQ---MKVPQKGIEVPVIAVDDLVH 115 (252)
Q Consensus 47 ~kIlIIy~S~~---GnT~~la~~i~~~l~~~~G-~ev~l~~l~~~-~p---~~~~~~---~~~~~~~d~~~~~~~~~l~~ 115 (252)
||||||++|+. ++|..|++.+++++++ .+ .++++++|.+. .| ..|+.+ .......+...+. .+++.+
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~-~~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~-~~~l~~ 78 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQE-AGPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQ-IEELLW 78 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHH-HTTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHH-HHHHHH
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHH-cCCCEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHH-HHHHHH
Confidence 79999999975 5799999999999998 78 89999999986 22 122211 0000000111111 378999
Q ss_pred cCeEEEeccccCCCchHHHHHHHHhhhhh-h----------hhccCCCCcEEEEEeeCCCC---------C-ChHHHHHH
Q 040588 116 ADGLLFGFPTRFGSMASQMKAFFDSTFHL-W----------EQQRLAGVPAGFFVSTGTQG---------G-GQETTAWT 174 (252)
Q Consensus 116 aD~II~gsP~y~g~~~~~~k~fld~l~~~-~----------~~~~l~gK~~~if~s~G~~~---------g-~~~~~l~~ 174 (252)
||.|||++|+||+++|+.||.|||++... + ..+.|+||++.+++|+|+.. + ..+..+..
T Consensus 79 AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~ 158 (199)
T PF02525_consen 79 ADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPY 158 (199)
T ss_dssp SSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHH
T ss_pred cCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHH
Confidence 99999999999999999999999997321 1 13578999999999988751 0 12344556
Q ss_pred HHHHHHHcCcEEecC
Q 040588 175 AITQLAHHGMVYVPI 189 (252)
Q Consensus 175 l~~~l~~~G~~vv~~ 189 (252)
+...+...|+..+..
T Consensus 159 ~~~~~~~~G~~~~~~ 173 (199)
T PF02525_consen 159 LRGILKFCGIKDVES 173 (199)
T ss_dssp HHHHHHHTTEEEEEE
T ss_pred HHHHHHhCCCceeeE
Confidence 777788889988864
No 38
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.57 E-value=1.8e-14 Score=114.45 Aligned_cols=119 Identities=26% Similarity=0.299 Sum_probs=91.6
Q ss_pred EEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccC-CC
Q 040588 51 IIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRF-GS 129 (252)
Q Consensus 51 IIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~-g~ 129 (252)
|+|+|++|||+++|+.|++++++ .|++++++++.+... ...++.+++.+||++|||+ |.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~-~g~~~~~~~~~~~~~-------------------~~~~~~~~~~~i~~~sT~~~g~ 60 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRE-RGVEVRVVDLDDFDD-------------------SPSDLSEYDLLIFGVSTYGEGE 60 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHH-TTSEEEEEEGGGSCH-------------------HHHHHCTTSEEEEEEEEETTTE
T ss_pred CEEECCchhHHHHHHHHHHHHHH-cCCceeeechhhhhh-------------------hhhhhhhhceeeEeecccCCCc
Confidence 79999999999999999999998 899999999987521 0357889999999999997 54
Q ss_pred chHHHHHHHHhhhhhh----hhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 040588 130 MASQMKAFFDSTFHLW----EQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 130 ~~~~~k~fld~l~~~~----~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
+|..++.++..+...+ ....++++.+++|+.+.+..++.-.+.+.+.+.|...|+.++..
T Consensus 61 ~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~ 124 (143)
T PF00258_consen 61 PPDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGP 124 (143)
T ss_dssp ESGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESS
T ss_pred chhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEEC
Confidence 6655444444433322 12468999999999876644332246788999999999999875
No 39
>PRK08105 flavodoxin; Provisional
Probab=99.55 E-value=1.4e-13 Score=110.57 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=94.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|.||+|+|+|.+|||+.+|+.|++.+.+ .|.+++++++.+.. .....++|.|||++||
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~-~g~~~~~~~~~~~~---------------------~~~~~~~~~vi~~~sT 58 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTA-QGHEVTLFEDPELS---------------------DWQPYQDELVLVVTST 58 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHh-CCCceEEechhhCC---------------------chhcccCCeEEEEECC
Confidence 6789999999999999999999999988 89998888775421 1123457999999999
Q ss_pred c-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 040588 126 R-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 126 y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
| .|.+|..+..|++.+... ...++|+.+++|+.++......-.....+.+.|..+|...+..
T Consensus 59 ~G~Ge~p~~~~~f~~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~ 121 (149)
T PRK08105 59 TGQGDLPDSIVPLFQALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGE 121 (149)
T ss_pred CCCCCCChhHHHHHHHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 9 788999999999887642 1268999999999876532112235677888899999988764
No 40
>PRK13555 azoreductase; Provisional
Probab=99.54 E-value=3.3e-13 Score=114.20 Aligned_cols=138 Identities=11% Similarity=0.054 Sum_probs=93.0
Q ss_pred CceEEEEEeCCc----hhHHHHHHHHHHhccccCC--ceEEEEECCCCCCHH----HHhcccCC-C---CC-------CC
Q 040588 46 QLKIFIIFYSMY----GHVEILARRMKKGVDSIDG--VEGVLYRVPETLPAE----VLEQMKVP-Q---KG-------IE 104 (252)
Q Consensus 46 ~~kIlIIy~S~~----GnT~~la~~i~~~l~~~~G--~ev~l~~l~~~~p~~----~~~~~~~~-~---~~-------d~ 104 (252)
|+|||+|+.|+. +.|..+++.+++++++ .+ .+|+.++|.+...+. .+...... . .. ..
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~-~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~ 79 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKE-ANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVAT 79 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHH
Confidence 689999999963 6799999999999987 44 799999998763211 11110000 0 00 01
Q ss_pred CcccchhhhhccCeEEEeccccCCCchHHHHHHHHhhhhh-h--------hhccCCCCcEEEEEeeCCCCCCh-----HH
Q 040588 105 VPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHL-W--------EQQRLAGVPAGFFVSTGTQGGGQ-----ET 170 (252)
Q Consensus 105 ~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~-~--------~~~~l~gK~~~if~s~G~~~g~~-----~~ 170 (252)
...+ .+.+.+||.|||++|.||+++|+.+|+|||++... + ..+.++||++.++++.|+...+. ..
T Consensus 80 ~~~~-~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~ 158 (208)
T PRK13555 80 VDQY-LNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEM 158 (208)
T ss_pred HHHH-HHHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhh
Confidence 1122 57899999999999999999999999999997532 0 01358999999998876643221 11
Q ss_pred HHHHHHHHHHHcCcE
Q 040588 171 TAWTAITQLAHHGMV 185 (252)
Q Consensus 171 ~l~~l~~~l~~~G~~ 185 (252)
....+...|...|+.
T Consensus 159 ~~~yl~~il~~~Gi~ 173 (208)
T PRK13555 159 AVNYVTTVLGFWGIT 173 (208)
T ss_pred HHHHHHHHHHhcCCC
Confidence 224555555555554
No 41
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=99.51 E-value=4.2e-14 Score=112.19 Aligned_cols=112 Identities=16% Similarity=0.249 Sum_probs=90.0
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
||+||+|+|++|+|+++|+.|+..+++ .|.+|++.++... ...++.+||.||||+|+|
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e-~g~qvdi~dl~~~---------------------~~~~l~~ydavVIgAsI~ 58 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRE-SGIQVDIQDLHAV---------------------EEPALEDYDAVVIGASIR 58 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhh-cCCeeeeeehhhh---------------------hccChhhCceEEEecchh
Confidence 799999999999999999999999999 8999999998763 124789999999999999
Q ss_pred CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCCh--HHHHHHHHHHHHHcCcE
Q 040588 127 FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQ--ETTAWTAITQLAHHGMV 185 (252)
Q Consensus 127 ~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~--~~~l~~l~~~l~~~G~~ 185 (252)
.+.....++.|+.+... .|..|+.++|++.-...-.. ..+-..+.++|+..-+.
T Consensus 59 ~~h~~~~~~~Fv~k~~e-----~L~~kP~A~f~vnl~a~k~k~~~e~~~yv~kfl~~~~Wq 114 (175)
T COG4635 59 YGHFHEAVQSFVKKHAE-----ALSTKPSAFFSVNLTARKEKRTPETNSYVRKFLMKSPWQ 114 (175)
T ss_pred hhhhHHHHHHHHHHHHH-----HHhcCCceEEEeehhhcccccCchHHHHHHHHHhcCCCc
Confidence 99999999999998764 68999999998853321110 12334666777665554
No 42
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=99.49 E-value=6.9e-13 Score=109.96 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=85.8
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
+.|||||||++|++......-+.+.+.++ ...++++.+|....|.. ..|... ..+.+.+||.|||.+
T Consensus 3 ~~~~kiLiI~aHP~~~~S~~n~~l~~~~~--~~~~v~~~DL~~~~p~~----------~~d~~~-eq~~l~~aD~iV~~f 69 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSVANRVLLKPAQ--QLEHVTVHDLYAHYPDF----------FIDIPH-EQALLREHDVIVFQH 69 (184)
T ss_pred CCCCEEEEEECCCCcccCHHHHHHHHHHH--cCCceEEEECcccCCCC----------CCCHHH-HHHHHHhCCEEEEEc
Confidence 45799999999986432112222333333 23468888988764310 112222 257899999999999
Q ss_pred cccCCCchHHHHHHHHhhhhh-hh----hccCCCCcEEEEEeeCCCCC-----Ch-----HHHHHHHHHHHHHcCcEEec
Q 040588 124 PTRFGSMASQMKAFFDSTFHL-WE----QQRLAGVPAGFFVSTGTQGG-----GQ-----ETTAWTAITQLAHHGMVYVP 188 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~-~~----~~~l~gK~~~if~s~G~~~g-----~~-----~~~l~~l~~~l~~~G~~vv~ 188 (252)
|+||+++|+.||.|+|++... |. ...++||++.+++|.|+... +. +..+..+...+...||.+++
T Consensus 70 Pl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~ 149 (184)
T PRK04930 70 PLYTYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLS 149 (184)
T ss_pred CccccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcC
Confidence 999999999999999997532 21 13589999999888765321 11 11233344455567888876
Q ss_pred C
Q 040588 189 I 189 (252)
Q Consensus 189 ~ 189 (252)
.
T Consensus 150 ~ 150 (184)
T PRK04930 150 P 150 (184)
T ss_pred c
Confidence 4
No 43
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=99.49 E-value=8.2e-13 Score=109.80 Aligned_cols=134 Identities=25% Similarity=0.260 Sum_probs=95.0
Q ss_pred ceEEEEEeCC--chhHHHHHHHHHHhccccCC-ceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 47 LKIFIIFYSM--YGHVEILARRMKKGVDSIDG-VEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 47 ~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G-~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
|||++|++|. ...|+.+++.+.+.+.+ .+ .++..+++....+...... +.. ......+ .+.+.++|++||+|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~-~~~~~~~~~~~~lP~~~~d~~~--~~~-p~~v~~~-~~~i~~aD~li~~t 75 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPA-GGEVEVEFDDLDLPLYNEDLEA--DGL-PPAVQAL-REAIAAADGLIIAT 75 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcc-cCceEEEecccccCCCCcchhh--ccC-CHHHHHH-HHHHHhCCEEEEEC
Confidence 6999999995 57799999999999987 44 3333333322111100000 000 0011222 57889999999999
Q ss_pred cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 040588 124 PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
|+|++++|+.+|+.||.+.. ..+.+|++++++++++.. +...+..+++..+...++..++.+
T Consensus 76 PeYn~s~pg~lKnaiD~l~~----~~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~~~ 137 (184)
T COG0431 76 PEYNGSYPGALKNAIDWLSR----EALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIPAG 137 (184)
T ss_pred CccCCCCCHHHHHHHHhCCH----hHhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceecccc
Confidence 99999999999999999875 258999999998877643 334567788888888999988764
No 44
>PRK05723 flavodoxin; Provisional
Probab=99.34 E-value=3.8e-11 Score=96.71 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=88.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhc--cCeEEEecc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVH--ADGLLFGFP 124 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~--aD~II~gsP 124 (252)
|||.|+|+|.+|||+.+|+.|++.+.+ .|.+++++...+ ..++.+ .|.|||+++
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~-~g~~~~~~~~~~-----------------------~~~~~~~~~~~li~~~s 56 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKA-AGFEAWHNPRAS-----------------------LQDLQAFAPEALLAVTS 56 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHH-CCCceeecCcCC-----------------------HhHHHhCCCCeEEEEEC
Confidence 689999999999999999999999987 787776533211 223333 499999999
Q ss_pred cc-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCC-hHHHHHHHHHHHHHcCcEEecC
Q 040588 125 TR-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGG-QETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 125 ~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~-~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
|| .|.+|.....|++.+... ....|+|+++++|+.+...++. .-.+...+.+.|...|...+..
T Consensus 57 T~G~Ge~Pd~~~~f~~~L~~~-~~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~ 122 (151)
T PRK05723 57 TTGMGELPDNLMPLYSAIRDQ-LPAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQP 122 (151)
T ss_pred CCCCCCCchhHHHHHHHHHhc-CccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeec
Confidence 99 577999999998887532 1126899999999987654322 2235777888898888877653
No 45
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=99.31 E-value=2.1e-11 Score=100.46 Aligned_cols=128 Identities=20% Similarity=0.311 Sum_probs=81.1
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCC
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFG 128 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g 128 (252)
||||+++++......-+++.+.+.+ . .+|++++|.+..|.. ..|... ..+.+.+||.|||.+|+||+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~-~-~~v~v~dL~~~~p~~----------~~dv~~-eq~~l~~aD~iV~~fP~~w~ 68 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQART-L-EGVEIRSLYQLYPDF----------NIDIAA-EQEALSRADLIVWQHPMQWY 68 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHh-c-CCeEEEEChhhcCCc----------chhHHH-HHHHHHhCCEEEEEcChhhc
Confidence 9999999864322233333333332 1 258888887754310 112222 26789999999999999999
Q ss_pred CchHHHHHHHHhhhhh-hh----hccCCCCcEEEEEeeCCCC-----CCh---HHHHHHHHHHHHHcCcEEecC
Q 040588 129 SMASQMKAFFDSTFHL-WE----QQRLAGVPAGFFVSTGTQG-----GGQ---ETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 129 ~~~~~~k~fld~l~~~-~~----~~~l~gK~~~if~s~G~~~-----g~~---~~~l~~l~~~l~~~G~~vv~~ 189 (252)
++|+.+|.|+|++... |. ...++||++.++.|.|+.. ++. +..+..+...+...||..++.
T Consensus 69 ~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~ 142 (176)
T PRK00871 69 SIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPP 142 (176)
T ss_pred cccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcce
Confidence 9999999999997531 21 1358999888777766531 111 112344555556678887654
No 46
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=99.29 E-value=1.1e-11 Score=103.20 Aligned_cols=112 Identities=24% Similarity=0.312 Sum_probs=82.4
Q ss_pred ceEEEEEeCCc-hhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCC--CCCCCcccchhhhhccCeEEEec
Q 040588 47 LKIFIIFYSMY-GHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQ--KGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 47 ~kIlIIy~S~~-GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~--~~d~~~~~~~~~l~~aD~II~gs 123 (252)
|||||||+.+. +-|..+++.+++.+++ .+.++...++....-. +.. .+.. ...|+.. ..+.|.+||.|||..
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~-~~~~v~~~dl~~~~fd-~~~--~~~d~~~~~Dv~~-E~e~l~~AD~ivlqf 75 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNE-AGHEVALKDLYALGFD-PYL--TYPDGEFPIDVKA-EQEKLLWADVIVLQF 75 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHH-cchHHHhhhhhhhcCC-cee--ecCccCCCCCHHH-HHHHHHhcceEEEEc
Confidence 79999999997 7789999999999998 7887776665543100 000 0111 1123332 268899999999999
Q ss_pred cccCCCchHHHHHHHHhhhhh-hh---h-----ccCCCCcEEEEEeeCC
Q 040588 124 PTRFGSMASQMKAFFDSTFHL-WE---Q-----QRLAGVPAGFFVSTGT 163 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~-~~---~-----~~l~gK~~~if~s~G~ 163 (252)
|+||+++|+.+|.||||.... |. . +.|+||.+.+++|.|.
T Consensus 76 PlwW~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~ 124 (189)
T COG2249 76 PLWWYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGA 124 (189)
T ss_pred CchhccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCC
Confidence 999999999999999997432 11 1 4689999999999876
No 47
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=99.22 E-value=2.5e-10 Score=94.70 Aligned_cols=142 Identities=17% Similarity=0.109 Sum_probs=96.6
Q ss_pred CceEEEEEeCCc---hhHHHHHHHHHHhccc-cCCceEEEEECCCC-CCH---HHHhccc--CCCC-CC------CCccc
Q 040588 46 QLKIFIIFYSMY---GHVEILARRMKKGVDS-IDGVEGVLYRVPET-LPA---EVLEQMK--VPQK-GI------EVPVI 108 (252)
Q Consensus 46 ~~kIlIIy~S~~---GnT~~la~~i~~~l~~-~~G~ev~l~~l~~~-~p~---~~~~~~~--~~~~-~d------~~~~~ 108 (252)
|+|||+|-.|+. +.|.++++++.+..++ +.+.++...+|... .|. ......+ +... .. +..+-
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 789999999974 5699999999999976 24567777888765 332 1221111 1110 01 01111
Q ss_pred chhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhh---------hhccCCCCcEEEEEeeCCCCCCh----HHHHHHH
Q 040588 109 AVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLW---------EQQRLAGVPAGFFVSTGTQGGGQ----ETTAWTA 175 (252)
Q Consensus 109 ~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~---------~~~~l~gK~~~if~s~G~~~g~~----~~~l~~l 175 (252)
..+++..||.+||++|.|+.++|+++|+|||++..-- ..+.+.||++.++.+.|+..++. +....+|
T Consensus 81 l~~ef~aAD~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~YL 160 (202)
T COG1182 81 LLEEFLAADKVVIAAPMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPYL 160 (202)
T ss_pred HHHHHHhcCeEEEEecccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHHH
Confidence 2678999999999999999999999999999985311 12567899999999988765543 3345566
Q ss_pred HHHHHHcCcEEe
Q 040588 176 ITQLAHHGMVYV 187 (252)
Q Consensus 176 ~~~l~~~G~~vv 187 (252)
+..|.-.|+.-+
T Consensus 161 r~ilgF~Gitd~ 172 (202)
T COG1182 161 RTILGFLGITDV 172 (202)
T ss_pred HHHhhhcCCCcc
Confidence 666655566433
No 48
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.22 E-value=2.4e-10 Score=110.59 Aligned_cols=122 Identities=14% Similarity=0.062 Sum_probs=98.4
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
..|.+|+|+|+|.+|||+.+|+.+++.+++ .|.+++++++.+. ...++.+++.|||++
T Consensus 59 ~~~~~v~IlygSqTGnae~lA~~la~~l~~-~g~~~~v~~~~d~---------------------~~~~L~~~~~vl~v~ 116 (600)
T PRK10953 59 AEMPGITLISASQTGNARRVAEQLRDDLLA-AKLNVNLVNAGDY---------------------KFKQIAQEKLLIVVT 116 (600)
T ss_pred CCCCeEEEEEEcCchHHHHHHHHHHHHHHh-CCCCcEEechHhC---------------------CHhHhccCCeEEEEE
Confidence 457899999999999999999999999988 8999998888764 256788899999999
Q ss_pred ccc-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEec
Q 040588 124 PTR-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVP 188 (252)
Q Consensus 124 P~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~ 188 (252)
+|| .|.+|..++.|.+.+... ....|.|+.+++|+.+.+.....-.+.+.+.+.|...|...+.
T Consensus 117 ST~G~Ge~Pdna~~F~~~L~~~-~~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~ 181 (600)
T PRK10953 117 STQGEGEPPEEAVALHKFLFSK-KAPKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLL 181 (600)
T ss_pred CCCCCCCCChhHHHHHHHHhhC-cCcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 999 799999999998877431 1135899999999987664322223567788888888887764
No 49
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.13 E-value=8.3e-10 Score=107.07 Aligned_cols=120 Identities=15% Similarity=0.101 Sum_probs=96.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
.++|+|+|+|.+|||+.+|+.|++.+++ .|.++++.++.++ ...++.+++.|||+++|
T Consensus 58 ~~~i~IlygSqTGnae~~A~~l~~~l~~-~g~~~~v~~~~d~---------------------~~~~l~~~~~li~v~ST 115 (597)
T TIGR01931 58 EKRVTILYGSQTGNARRLAKRLAEKLEA-AGFSVRLSSADDY---------------------KFKQLKKERLLLLVIST 115 (597)
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHh-CCCccEEechHHC---------------------CHhhcccCceEEEEeCC
Confidence 5789999999999999999999999988 8999999888764 25667889999999999
Q ss_pred c-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEec
Q 040588 126 R-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVP 188 (252)
Q Consensus 126 y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~ 188 (252)
| .|.+|..++.|++.+...- ...|+|+.+++|+.+.+.....-.+...+.+.|...|...+.
T Consensus 116 ~GeGe~Pdna~~F~~~L~~~~-~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~ 178 (597)
T TIGR01931 116 QGEGEPPEEAISFHKFLHSKK-APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLL 178 (597)
T ss_pred CCCCcCCHHHHHHHHHHHhCC-CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEee
Confidence 8 7889999999988774321 135899999999986654322223467788888888987764
No 50
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=99.10 E-value=8.4e-10 Score=87.66 Aligned_cols=134 Identities=19% Similarity=0.165 Sum_probs=83.6
Q ss_pred CCCceEEEEEeCC--chhHHHHHHHHHHhccc-cCCceEEEEECCCCCCHHHHhcccCCCC-CCC-Cc---ccchhhhhc
Q 040588 44 TGQLKIFIIFYSM--YGHVEILARRMKKGVDS-IDGVEGVLYRVPETLPAEVLEQMKVPQK-GIE-VP---VIAVDDLVH 115 (252)
Q Consensus 44 ~~~~kIlIIy~S~--~GnT~~la~~i~~~l~~-~~G~ev~l~~l~~~~p~~~~~~~~~~~~-~d~-~~---~~~~~~l~~ 115 (252)
...+||++|-+|. ..-+-.+|.++.+--++ ..|.+++.+++.+. |....+...-+++ -|. .+ +.-...+.+
T Consensus 8 k~~~kv~~imGSvR~kr~cp~ia~~v~e~~ke~~~~l~ie~vDls~l-PL~~~D~e~~pi~~vd~y~~~~t~aw~~ki~~ 86 (199)
T KOG4530|consen 8 KPLIKVAAIMGSVRKKRFCPGIARAVIELTKESVPGLQIEYVDLSPL-PLINTDLEVNPIKSVDEYYPPVTEAWRQKILE 86 (199)
T ss_pred hhhHHHHHHhhhhhhcccCHHHHHHHHHhhhccCCCCceEEEeccCC-ccccCCcccCccccccccCcHHHHHHHHHHhh
Confidence 3457999999995 33344566666654443 35788999999874 2100000000011 011 11 111467899
Q ss_pred cCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEE
Q 040588 116 ADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVY 186 (252)
Q Consensus 116 aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~v 186 (252)
+|.|+|.||-|++++|+++|+.||+++. .|.||++.+++ ||+ +||.. .-.++++...-..|.+
T Consensus 87 aD~ivFvtPqYN~gypA~LKNAlD~lyh-----eW~gKPalivS-yGG-hGGg~-c~~qL~~v~~fLkm~v 149 (199)
T KOG4530|consen 87 ADSIVFVTPQYNFGYPAPLKNALDWLYH-----EWAGKPALIVS-YGG-HGGGR-CQYQLRQVGVFLKMHV 149 (199)
T ss_pred cceEEEecccccCCCchHHHHHHHHhhh-----hhcCCceEEEE-ecC-CCCch-HHHHHHHHHhhheeee
Confidence 9999999999999999999999999985 68899987665 555 34433 2334444444445554
No 51
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=98.87 E-value=4.4e-08 Score=77.26 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=54.8
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|.++|+|+|.+|||+++++.+... .+.+.+.+. +.+...+-+||.+|||
T Consensus 1 ~~~~I~Y~S~TGNt~~f~~kl~~~--------~~~i~i~~~-----------------------~~~~~~~~~~lv~PTy 49 (134)
T PRK03600 1 MMMLVYFSSKTGNTHRFVQKLGLP--------ATRIPINER-----------------------ERLEVDEPYILITPTY 49 (134)
T ss_pred CcEEEEEECCChhHHHHHHHhCCc--------ceEEecCCC-----------------------ccccCCCCEEEEEecc
Confidence 468899999999999887776322 234555421 1244578899999999
Q ss_pred C-----CCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCC
Q 040588 127 F-----GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQ 164 (252)
Q Consensus 127 ~-----g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~ 164 (252)
. |.+|..++.||+... ......++|++ |.+
T Consensus 50 ~~g~~~G~vP~~v~~Fl~~~~-------n~~~~~gV~gs-Gnr 84 (134)
T PRK03600 50 GGGGTAGAVPKQVIRFLNDEH-------NRKLLRGVIAS-GNR 84 (134)
T ss_pred CCCCcCCcccHHHHHHHhccc-------cCCcEEEEEEe-cCc
Confidence 7 489999999998742 12345666665 443
No 52
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=98.58 E-value=6.4e-07 Score=69.73 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=50.7
Q ss_pred EEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc-CCC
Q 040588 51 IIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR-FGS 129 (252)
Q Consensus 51 IIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y-~g~ 129 (252)
|+|.|.+|||+.+++. .|.++..+.+.+. ....+ ++|.|+| |++| .|.
T Consensus 1 IvY~S~TGNte~fv~~--------lg~~~~~i~~~~~---------------------d~~~~-~~~~vli-TyT~G~G~ 49 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEK--------LGFQHIRIPVDET---------------------DDIHV-DQEFVLI-TYTGGFGA 49 (125)
T ss_pred CEEEcccccHHHHHHH--------cCCCcEEeecCCc---------------------chhhc-CCCEEEE-ecCCCCCc
Confidence 6899999999999443 2445554555432 12234 8999988 9999 466
Q ss_pred chHHHHHHHHhhhhhhhhccCCCCcEEEEEee
Q 040588 130 MASQMKAFFDSTFHLWEQQRLAGVPAGFFVST 161 (252)
Q Consensus 130 ~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~ 161 (252)
+|.++..|++.+. ++..++|+|+
T Consensus 50 vP~~~~~Fle~~~---------n~~~gV~gSG 72 (125)
T TIGR00333 50 VPKQTISFLNKKH---------NLLRGVAASG 72 (125)
T ss_pred CCHHHHHHHHhhh---------hcEEEEEEcC
Confidence 9999999998753 2778888864
No 53
>PRK02551 flavoprotein NrdI; Provisional
Probab=98.21 E-value=3.1e-05 Score=62.38 Aligned_cols=115 Identities=15% Similarity=0.199 Sum_probs=66.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccc-cCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDS-IDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~-~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
|.++.|+|.|.+|||++.++.+...+.+ ..+..+..+++.+..++ ..+.+..-.-.|+-+|
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~------------------~~~~~~~~~p~vli~p 62 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHE------------------TTDFFPETEPFVAFLP 62 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCc------------------cccccccCCCEEEEEe
Confidence 5679999999999999999998766532 01233344554433110 0111344577889999
Q ss_pred cc-CCC----------chHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEe
Q 040588 125 TR-FGS----------MASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYV 187 (252)
Q Consensus 125 ~y-~g~----------~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv 187 (252)
|| .|. +|.++..|+..- ..+....++|++ |++. ..+.....-...-.+.++.++
T Consensus 63 TY~~gG~~~~~~~~~~vp~~v~dFL~~~-------~N~~~~~gVigs-GNrN-fg~~F~~aa~~ia~~~~vP~L 127 (154)
T PRK02551 63 TYLEGGNGIDNGDVEILTTPLGDFIAYH-------DNAKRCLGIIGS-GNRN-FNNQYCLTAKQYAKRFGFPML 127 (154)
T ss_pred eecCCCCCcccCccccchHHHHHHHcch-------hhhhheEEEEee-cccH-HHHHHHHHHHHHHHHcCCCEE
Confidence 99 555 688888888431 223456777775 4543 222222222333344555554
No 54
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=98.17 E-value=1.2e-05 Score=74.61 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=91.2
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|+|+|+|+|.+|+..-+|+.|..++.. .|..+.+..+.++ ++++|.+.+.|||...|-
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r-~~~~~~V~s~Dey---------------------d~~~ll~~~~vvFVcSTT 58 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHR-RGLQCLVMSMDEY---------------------DVEKLLDERLVVFVCSTT 58 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHh-ccCCceEeecccc---------------------CHhHhccCceEEEEEecC
Confidence 689999999999999999999999988 7888888888775 367788889988887776
Q ss_pred -CCCchHHHHHHHHhhhhh-hhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEe
Q 040588 127 -FGSMASQMKAFFDSTFHL-WEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYV 187 (252)
Q Consensus 127 -~g~~~~~~k~fld~l~~~-~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv 187 (252)
-|.+|.-|+.|..-+... .....|++-..|+++-+.+.......+.+-+...|...|..-+
T Consensus 59 GqGe~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~ 121 (574)
T KOG1159|consen 59 GQGEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSV 121 (574)
T ss_pred CCCCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccc
Confidence 688999999887654321 1123467788899988766443333456778888888887654
No 55
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=97.25 E-value=0.00094 Score=51.75 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=49.5
Q ss_pred EEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCCC-
Q 040588 51 IIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGS- 129 (252)
Q Consensus 51 IIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g~- 129 (252)
|+|.|.+|||++.++.+...+.. ..+.+.+. .+.+.-.+-.|+-+|||...
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~------~~i~~~~~----------------------~~~~~~~ep~vLitpTy~~G~ 52 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPA------IRIPIREI----------------------SPDLEVDEPFVLITPTYGFGE 52 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SE------EEE-SSCT----------------------TSTS--SS-EEEEEE-BTTTB
T ss_pred CEEECCCcCHHHHHHHHcccchh------cccccccc----------------------cccccCCCCEEEEecccCCCC
Confidence 68999999999999888654432 22333321 12233456788999999644
Q ss_pred ----chHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEe
Q 040588 130 ----MASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYV 187 (252)
Q Consensus 130 ----~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv 187 (252)
+|.++..||+.-. -+....++++| |+++-+ ......-.....+.+..++
T Consensus 53 ~~~~vp~~v~~FL~~~~-------N~~~l~GVigS-GNrNfg-~~f~~aa~~ia~ky~VPll 105 (122)
T PF07972_consen 53 NDGGVPKQVIRFLENPD-------NRKLLRGVIGS-GNRNFG-DNFCLAADKIAEKYGVPLL 105 (122)
T ss_dssp SSTSS-HHHHHHHHSHH-------HGGGEEEEEEE-E-GGGG-GGTTHHHHHHHHHHT--EE
T ss_pred CCCCCCHHHHHHHHHHH-------HHhhheeEEec-CCcHHH-HHHHHHHHHHHHHcCCCEE
Confidence 8999999999421 12234566665 554322 1112222233344566555
No 56
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.018 Score=45.13 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=50.0
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRF 127 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~ 127 (252)
.++++|.|.+|||++-++.+. +.+ +++.... ..+.+.-.+-.|+-+|||.
T Consensus 2 ~~~v~f~S~SgNt~RFv~kL~--~~~--------~~I~~~~--------------------~~~~~~v~epyvlitpTyg 51 (141)
T COG1780 2 MLLVYFSSLSGNTHRFVEKLG--LPA--------VRIPLNR--------------------EEDPIEVDEPYVLITPTYG 51 (141)
T ss_pred ceEEEEEecCccHHHHHHHhC--CCc--------eeccccc--------------------ccCCccCCCCeEEEecccc
Confidence 367788889999999888774 221 2222110 0122344577899999997
Q ss_pred CC-----chHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCC
Q 040588 128 GS-----MASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQG 165 (252)
Q Consensus 128 g~-----~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~ 165 (252)
+. +|.++-.||..- .-+.+.-+++++ |+.+
T Consensus 52 ~G~~~~~Vp~~vi~FLn~~-------~Nr~~~rGViaS-GN~N 86 (141)
T COG1780 52 GGGTVGAVPKQVIRFLNNE-------HNRALCRGVIAS-GNRN 86 (141)
T ss_pred CCCccCccCHHHHHHhccc-------cchhheEEEEec-CCcc
Confidence 65 899999999531 123345566665 5543
No 57
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.015 Score=56.59 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=79.9
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhc-cCeEEEec
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVH-ADGLLFGF 123 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~-aD~II~gs 123 (252)
...+++|+|+|.+||.+.+|+.+++.+.. .|..+.+.++.++.+ .++.+ =..+++.+
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~-~g~~~~~~~~~~~~~---------------------~~~~~~~~~~~i~s 103 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEA-AGLQVLVASLDDYKP---------------------KDIAEERLLLFVVS 103 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHh-cCCceeecchhhcCh---------------------hhHHhhhceEEEEc
Confidence 45679999999999999999999999988 788888888877532 22222 35667777
Q ss_pred cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEe
Q 040588 124 PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYV 187 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv 187 (252)
....|.+|..+..|.+-+... ....|.+-..++++.+.+.......+-+.+...+..+|-..+
T Consensus 104 t~geGe~p~na~~f~~~l~~~-~a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l 166 (587)
T COG0369 104 TQGEGEPPDNAVAFHEFLKGK-KAPKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRL 166 (587)
T ss_pred cccCCCCCCchHHHHHHhccc-ccccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccc
Confidence 777899999999998876542 112455556666665433211111223445555666555443
No 58
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=95.95 E-value=0.018 Score=42.45 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=32.1
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|||++++|.-|.+..++..+.+.+++ .|.++++....
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~~ 40 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCR 40 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEec
Confidence 79999999999888889999999998 89888877643
No 59
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=95.15 E-value=0.19 Score=37.44 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=61.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|+||++++.+ .=+|..|+..+.+.+++ .|.++++.-+.+. ++ .+.+.++|.+++|
T Consensus 1 Mk~IlLvC~a-GmSTSlLV~Km~~aA~~-kg~~~~I~A~s~~-------------------e~-~~~~~~~DvvLlG--- 55 (102)
T COG1440 1 MKKILLVCAA-GMSTSLLVTKMKKAAES-KGKDVTIEAYSET-------------------EL-SEYIDNADVVLLG--- 55 (102)
T ss_pred CceEEEEecC-CCcHHHHHHHHHHHHHh-CCCceEEEEechh-------------------HH-HHhhhcCCEEEEC---
Confidence 6789988854 44677899999999988 8888887766653 11 4567799999987
Q ss_pred cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe--eCCCCC
Q 040588 126 RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS--TGTQGG 166 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s--~G~~~g 166 (252)
|+++-.++.+... ..-+|+++.++-+ ||...|
T Consensus 56 ------PQv~y~~~~~~~~---~~~~giPV~vI~~~dYG~mnG 89 (102)
T COG1440 56 ------PQVRYMLKQLKEA---AEEKGIPVEVIDMLDYGMMNG 89 (102)
T ss_pred ------hHHHHHHHHHHHH---hcccCCCeEEeCHHHccCcCc
Confidence 4566666665432 1336779988865 666544
No 60
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=94.80 E-value=0.58 Score=35.25 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=59.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|+|||+++++.-| |..|++.+.+..++ .|+++++-..... .. .....++|.|+++
T Consensus 3 ~kkIllvC~~G~s-TSll~~km~~~~~~-~gi~~~V~A~~~~-------------------~~-~~~~~~~DviLl~--- 57 (106)
T PRK10499 3 KKHIYLFCSAGMS-TSLLVSKMRAQAEK-YEVPVIIEAFPET-------------------LA-GEKGQNADVVLLG--- 57 (106)
T ss_pred CCEEEEECCCCcc-HHHHHHHHHHHHHH-CCCCEEEEEeecc-------------------hh-hccccCCCEEEEC---
Confidence 5689999976544 45788888888877 7887776543321 01 2345678977764
Q ss_pred cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe--eCCCCCChHHHHHHHHHHHHH
Q 040588 126 RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS--TGTQGGGQETTAWTAITQLAH 181 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s--~G~~~g~~~~~l~~l~~~l~~ 181 (252)
|+++..++.+.. ...++++.++-. ||.. +.+..+....+.+.+
T Consensus 58 ------Pqi~~~~~~i~~-----~~~~~pV~~I~~~~Yg~~--dg~~vl~~a~~~~~~ 102 (106)
T PRK10499 58 ------PQIAYMLPEIQR-----LLPNKPVEVIDSLLYGKV--DGLGVLKAAVAAIKK 102 (106)
T ss_pred ------HHHHHHHHHHHh-----hcCCCCEEEEChHhhhcC--CHHHHHHHHHHHHHH
Confidence 566666666542 233467777754 5653 334456666555544
No 61
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=94.64 E-value=0.2 Score=38.34 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=44.5
Q ss_pred CceEEEEEeCCch--hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 46 QLKIFIIFYSMYG--HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~G--nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
|||+++|-.++.| +|...++++.+..++ .|.++.+ +.+... .-.+.++.+++..+|.||+..
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~-~G~~i~V-E~qg~~--------------g~~~~lt~~~i~~Ad~VIia~ 65 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQL-EKWGVKI-ETQGAL--------------GTENRLTDEDIRRADVVLLIT 65 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHH-CCCeEEE-EecCCc--------------CcCCCCCHHHHHhCCEEEEEe
Confidence 5899999988876 577777888888887 7877653 222210 001123468899999999996
Q ss_pred cc
Q 040588 124 PT 125 (252)
Q Consensus 124 P~ 125 (252)
-+
T Consensus 66 d~ 67 (114)
T PRK10427 66 DI 67 (114)
T ss_pred cC
Confidence 55
No 62
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=94.50 E-value=0.079 Score=39.13 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=41.6
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.++|||+++++.-+ |..+++.+.+.+++ .|.++++....-. ++ .+.+.++|.|+++..
T Consensus 2 ~~~~ILl~C~~G~s-SS~l~~k~~~~~~~-~gi~~~v~a~~~~-------------------~~-~~~~~~~Dvill~pq 59 (95)
T TIGR00853 2 NETNILLLCAAGMS-TSLLVNKMNKAAEE-YGVPVKIAAGSYG-------------------AA-GEKLDDADVVLLAPQ 59 (95)
T ss_pred CccEEEEECCCchh-HHHHHHHHHHHHHH-CCCcEEEEEecHH-------------------HH-HhhcCCCCEEEECch
Confidence 35789999998755 44799999999998 8988776655421 11 334567897776644
Q ss_pred c
Q 040588 125 T 125 (252)
Q Consensus 125 ~ 125 (252)
+
T Consensus 60 i 60 (95)
T TIGR00853 60 V 60 (95)
T ss_pred H
Confidence 4
No 63
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=94.20 E-value=0.17 Score=36.36 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=43.7
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRF 127 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~ 127 (252)
||+++++|.-|++..+++.+.+.+++ .|++++....... .......+||.|+++..+=+
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~-~gi~~~~~~~~~~--------------------~~~~~~~~~D~il~~~~i~~ 59 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKE-LGIEVEVSAGSIL--------------------EVEEIADDADLILLTPQIAY 59 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHH-TTECEEEEEEETT--------------------THHHHHTT-SEEEEEESSGG
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHh-ccCceEEEEeccc--------------------ccccccCCCcEEEEcCccch
Confidence 79999999989888888999999998 8888776665421 01234556999988877643
No 64
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=93.91 E-value=0.11 Score=38.98 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=30.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|+|||+++++.-+++ .+++.+.+.+++ .|.++++....
T Consensus 1 MkkILlvCg~G~STS-lla~k~k~~~~e-~gi~~~i~a~~ 38 (104)
T PRK09590 1 MKKALIICAAGMSSS-MMAKKTTEYLKE-QGKDIEVDAIT 38 (104)
T ss_pred CcEEEEECCCchHHH-HHHHHHHHHHHH-CCCceEEEEec
Confidence 578999998876544 999999999988 88887765543
No 65
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=93.69 E-value=0.34 Score=37.28 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=46.3
Q ss_pred CceEEEEEeCCch--hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 46 QLKIFIIFYSMYG--HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~G--nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
++||+.|-.-++| +|.+.|++|.+...+ .|.++.+-.=... .--+.++.+++..||+|||++
T Consensus 1 ~~~IVAVTACPtGIAHTyMAAeaLe~~A~~-~g~~IKVETqGs~---------------G~eN~LT~edI~~Ad~VI~Aa 64 (122)
T COG1445 1 MKKIVAVTACPTGIAHTYMAAEALEKAAKK-LGVEIKVETQGAV---------------GIENRLTAEDIAAADVVILAA 64 (122)
T ss_pred CccEEEEecCCchHHHHHHHHHHHHHHHHH-cCCeEEEEcCCcc---------------cccCcCCHHHHHhCCEEEEEe
Confidence 4688988888988 799999999998888 8887665221110 001234578999999999997
Q ss_pred cc
Q 040588 124 PT 125 (252)
Q Consensus 124 P~ 125 (252)
=+
T Consensus 65 D~ 66 (122)
T COG1445 65 DI 66 (122)
T ss_pred cc
Confidence 54
No 66
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=93.43 E-value=0.78 Score=42.93 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=63.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
+.+--|+|.|.+|..++.|+.+.+.+.+ ....+.++++. +.+ .++-+.-.+++..|.
T Consensus 46 ~~~~~vfy~s~~GtA~~~A~~~~e~~~s-ld~~~~llnl~-y~~---------------------~d~pen~~~~lv~~~ 102 (601)
T KOG1160|consen 46 LIKSKVFYSSLTGTAKKAAKSVHEKLKS-LDELPKLLNLD-YSD---------------------FDVPENALYFLVLPS 102 (601)
T ss_pred CccceEEEEeccchHHHHHHHHHHHHHh-cccchhhcCCC-CCc---------------------cCCCcceEEEEEecc
Confidence 4455789999999999999999999987 55455666665 321 123345677888888
Q ss_pred cCCCchHHHHHHHHhhhhhh-----hhccCCCCcEEEEEeeCC
Q 040588 126 RFGSMASQMKAFFDSTFHLW-----EQQRLAGVPAGFFVSTGT 163 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~~~-----~~~~l~gK~~~if~s~G~ 163 (252)
|.+..| +.-|+..+..-. ....|+|-+.++|+.+..
T Consensus 103 ~~~~~~--~d~~~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~ 143 (601)
T KOG1160|consen 103 YDIDPP--LDYFLQWLEESANDFRVGSFPLRGLVYAVFGLGDS 143 (601)
T ss_pred cCCCCc--HHHHHHHHHhhhhccccCCccccCceEEEEeccch
Confidence 888876 455555553211 123567878888887544
No 67
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=92.65 E-value=0.2 Score=37.30 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=51.4
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRF 127 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~ 127 (252)
||++++++. -+|..+++.+.+.+++ .|.++++...... ++ .+.+.++|.|+++.
T Consensus 2 ~Ill~C~~G-aSSs~la~km~~~a~~-~gi~~~i~a~~~~-------------------e~-~~~~~~~Dvill~P---- 55 (99)
T cd05565 2 NVLVLCAGG-GTSGLLANALNKGAKE-RGVPLEAAAGAYG-------------------SH-YDMIPDYDLVILAP---- 55 (99)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHHH-CCCcEEEEEeeHH-------------------HH-HHhccCCCEEEEcC----
Confidence 688888554 6778899999999999 8998887655432 12 45677899666653
Q ss_pred CCchHHHHHHHHhhhhhhhhccCCCCcEEEEE
Q 040588 128 GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFV 159 (252)
Q Consensus 128 g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~ 159 (252)
+++..++.+... -.-.|+++.++-
T Consensus 56 -----Qv~~~~~~i~~~---~~~~~ipv~~I~ 79 (99)
T cd05565 56 -----QMASYYDELKKD---TDRLGIKLVTTT 79 (99)
T ss_pred -----hHHHHHHHHHHH---hhhcCCCEEEeC
Confidence 344455554421 112467887764
No 68
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=92.04 E-value=0.48 Score=34.89 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=31.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCc--eEEEEECC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGV--EGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~--ev~l~~l~ 85 (252)
|+|||.++++.=|++-.+...+.+.+++ .|+ +++...+.
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~-~gi~~~~~~~~v~ 41 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKE-LGIDVDVEQCAVD 41 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHH-cCCCceeeeEEec
Confidence 6799999999999999999999999998 787 44444444
No 69
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=91.46 E-value=0.92 Score=37.91 Aligned_cols=47 Identities=23% Similarity=0.496 Sum_probs=32.8
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
|||+||-+. +||+..+++++.+ .|++++++. . ..++.++|+||++.+
T Consensus 1 ~~~~v~~~~-~~~~~~~~~~l~~-----~G~~~~~~~--~-----------------------~~~~~~~d~iii~G~ 47 (200)
T PRK13143 1 MMIVIIDYG-VGNLRSVSKALER-----AGAEVVITS--D-----------------------PEEILDADGIVLPGV 47 (200)
T ss_pred CeEEEEECC-CccHHHHHHHHHH-----CCCeEEEEC--C-----------------------HHHHccCCEEEECCC
Confidence 688888765 7888777666644 566777653 1 235678999999774
No 70
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=90.84 E-value=0.61 Score=33.44 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=28.9
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEE
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLY 82 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~ 82 (252)
.||++++++..|.+..++..+.+.+.+ .+..+++.
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~-~~i~~~v~ 35 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKE-NGIDVKVE 35 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEE
Confidence 379999999999999999999999977 66654443
No 71
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=89.97 E-value=0.64 Score=34.23 Aligned_cols=36 Identities=28% Similarity=0.535 Sum_probs=28.1
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|||+++++.-+.+ .+++.+.+.+++ .|.++++....
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~-~~~~~~v~~~~ 36 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEK-RGIDAEIEAVP 36 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHH-CCCceEEEEec
Confidence 6899998876555 689999999998 78877665544
No 72
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=89.48 E-value=0.91 Score=44.25 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=39.3
Q ss_pred cccccccCCCCCCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEE
Q 040588 32 NLDQNQLTTTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYR 83 (252)
Q Consensus 32 ~~~~~~~~~~~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~ 83 (252)
|-++....+.....+|||+++++|.-|.+-.++..+.+.+++ .|.++++.+
T Consensus 492 ~~~~~~~~~~~~~k~mKILvaCGsGiGTStmva~kIkk~Lke-~GI~veV~~ 542 (602)
T PRK09548 492 NAVQKLISKQDGGKPVRILAVCGQGQGSSMMMKMKIKKYLDK-RGIPIIMDS 542 (602)
T ss_pred CchhhhhhhhccCcccEEEEECCCCchHHHHHHHHHHHHHHH-cCCCeEEEE
Confidence 333333444555668899999999999999999999999999 898766443
No 73
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=88.65 E-value=3.2 Score=34.89 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=40.5
Q ss_pred eEEEEEeCCch----hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 48 KIFIIFYSMYG----HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 48 kIlIIy~S~~G----nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
|||||++...| .-....+.+++.+++..+.++++.+=.+ .+..+.|.+||+||+-+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~--------------------~~~~~~L~~~Dvvv~~~ 60 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPD--------------------DLTPENLKGYDVVVFYN 60 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGG--------------------CTSHHCHCT-SEEEEE-
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcc--------------------cCChhHhcCCCEEEEEC
Confidence 79999988422 2235566666666622576666533211 12346799999999976
Q ss_pred cccCC-Cc-hHHHHHHHHhh
Q 040588 124 PTRFG-SM-ASQMKAFFDST 141 (252)
Q Consensus 124 P~y~g-~~-~~~~k~fld~l 141 (252)
-. + .+ ..+.+.|.+.+
T Consensus 61 ~~--~~~l~~~~~~al~~~v 78 (217)
T PF06283_consen 61 TG--GDELTDEQRAALRDYV 78 (217)
T ss_dssp SS--CCGS-HHHHHHHHHHH
T ss_pred CC--CCcCCHHHHHHHHHHH
Confidence 65 3 23 45556666554
No 74
>PRK06490 glutamine amidotransferase; Provisional
Probab=88.28 E-value=3.7 Score=35.38 Aligned_cols=37 Identities=8% Similarity=0.089 Sum_probs=28.0
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
..||||++|-.+..++...+++.+.+ .|.++++++..
T Consensus 5 ~~~~~vlvi~h~~~~~~g~l~~~l~~-----~g~~~~v~~~~ 41 (239)
T PRK06490 5 RDKRPVLIVLHQERSTPGRVGQLLQE-----RGYPLDIRRPR 41 (239)
T ss_pred CCCceEEEEecCCCCCChHHHHHHHH-----CCCceEEEecc
Confidence 35789999999988888777776652 46678887754
No 75
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=88.14 E-value=1.4 Score=31.63 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=29.2
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEE
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYR 83 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~ 83 (252)
+||+++++|.-|.+..++..+.+.+.+ .+..+++..
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~-~~~~~~v~~ 36 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKK-AGLEIPVTN 36 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEEE
Confidence 489999999999998889999999987 666555443
No 76
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=87.83 E-value=2.2 Score=41.59 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=46.6
Q ss_pred CCCCceEEEEEeCCch--hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEE
Q 040588 43 TTGQLKIFIIFYSMYG--HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLL 120 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~G--nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II 120 (252)
....+|++.|-.+++| +|...++++.+.+++ .|.++.+ +.+... .-.+.++.+++.++|.||
T Consensus 100 ~~~~~kivaVtacptGiAht~mAAeaL~~aA~~-~G~~i~V-Etqg~~--------------g~~n~lt~~~i~~Ad~VI 163 (563)
T PRK10712 100 ASGPKRVVAVTACPTGVAHTFMAAEAIETEAKK-RGWWVKV-ETRGSV--------------GAGNAITPEEVAAADLVI 163 (563)
T ss_pred ccccccEEEEecCCCchhHHHHHHHHHHHHHHH-CCCeEEE-EecCCc--------------ccCCCCCHHHHHhCCEEE
Confidence 4456899999988887 677788999888888 7877654 222210 001123468899999999
Q ss_pred Eeccc
Q 040588 121 FGFPT 125 (252)
Q Consensus 121 ~gsP~ 125 (252)
+..-+
T Consensus 164 ia~d~ 168 (563)
T PRK10712 164 VAADI 168 (563)
T ss_pred EecCC
Confidence 98654
No 77
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=87.27 E-value=2.3 Score=40.67 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=43.3
Q ss_pred CCceEEEEEeCCch--hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 45 GQLKIFIIFYSMYG--HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 45 ~~~kIlIIy~S~~G--nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
+.||+++|-.+++| +|...++++.+.+++ .|.++++ +.+... .-.+.++.+++.+||.||+.
T Consensus 2 ~~~kivaVtacp~GiAht~mAaeaL~~aA~~-~G~~i~V-Etqg~~--------------g~~~~lt~~~i~~Ad~VIia 65 (482)
T PRK11404 2 SSLRIVAITNCPAGIAHTYMVAEALEQKARS-LGHTIKV-ETQGSS--------------GVENRLSSEEIAAADYVILA 65 (482)
T ss_pred CcceEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEE-EecCCc--------------cCCCCCCHHHHHhCCEEEEe
Confidence 45799999998877 577777888888888 7877654 222210 00112346889999999999
No 78
>PRK07053 glutamine amidotransferase; Provisional
Probab=86.98 E-value=3.7 Score=35.28 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=37.3
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE-ec
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF-GF 123 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~-gs 123 (252)
+||+|+||-.++.-+-..+++.+. + .|.++++++..+. +. ...++.++|+||+ |+
T Consensus 1 ~m~~ilviqh~~~e~~g~i~~~L~----~-~g~~~~v~~~~~~----------------~~---~~~~~~~~d~lii~Gg 56 (234)
T PRK07053 1 MMKTAVAIRHVAFEDLGSFEQVLG----A-RGYRVRYVDVGVD----------------DL---ETLDALEPDLLVVLGG 56 (234)
T ss_pred CCceEEEEECCCCCCChHHHHHHH----H-CCCeEEEEecCCC----------------cc---CCCCccCCCEEEECCC
Confidence 478899999998655555555553 3 5778888887532 11 1234567898877 66
Q ss_pred cc
Q 040588 124 PT 125 (252)
Q Consensus 124 P~ 125 (252)
|.
T Consensus 57 p~ 58 (234)
T PRK07053 57 PI 58 (234)
T ss_pred CC
Confidence 64
No 79
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=86.63 E-value=2.2 Score=29.31 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=25.4
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCce
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVE 78 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~e 78 (252)
||++++.+..|.+..+++.+.+.+.+ .+..
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~-~~~~ 30 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKE-LGIE 30 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHH-CCCe
Confidence 58888888889999999999999987 6654
No 80
>PRK08250 glutamine amidotransferase; Provisional
Probab=86.20 E-value=5.1 Score=34.40 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=33.8
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE-eccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF-GFPT 125 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~-gsP~ 125 (252)
|||+||.....-....+...+ ++ .|++++++++.... . + ..++.++|+||+ |+|-
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~----~~-~g~~~~~~~~~~g~---------------~---~-p~~~~~~d~vii~GGp~ 56 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWA----EN-RGYDISYSRVYAGE---------------A---L-PENADGFDLLIVMGGPQ 56 (235)
T ss_pred CeEEEEecCCCCCchHHHHHH----HH-CCCeEEEEEccCCC---------------C---C-CCCccccCEEEECCCCC
Confidence 689999988753333444444 23 57788887765321 0 1 235678999877 6764
No 81
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=84.84 E-value=2.4 Score=35.73 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=32.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
||||+||.+. .||...+++++.+ .|+++++..+++ .+++.++|+|||..
T Consensus 1 ~~~~~iid~g-~gn~~s~~~al~~-----~g~~~~v~~~~~-----------------------~~~l~~~d~lIlpG 49 (209)
T PRK13146 1 MMTVAIIDYG-SGNLRSAAKALER-----AGAGADVVVTAD-----------------------PDAVAAADRVVLPG 49 (209)
T ss_pred CCeEEEEECC-CChHHHHHHHHHH-----cCCCccEEEECC-----------------------HHHhcCCCEEEECC
Confidence 6789888764 5777777766654 344333333332 46688999999965
No 82
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=82.70 E-value=3.7 Score=29.06 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=26.2
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceE
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEG 79 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev 79 (252)
||++++++..|.+..+...+.+.+.+ .+...
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~-~~i~~ 31 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKE-LGIEA 31 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHH-CCCcE
Confidence 58999999999999999999999976 66543
No 83
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=81.75 E-value=14 Score=32.45 Aligned_cols=56 Identities=9% Similarity=0.056 Sum_probs=36.0
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.+|||+|+-+..+.+-..+++ .+++ .|++++++.+.+.. . ....+.++|+|||..-
T Consensus 2 ~~~kvaVl~~pG~n~d~e~~~----Al~~-aG~~v~~v~~~~~~------------------~-~~~~l~~~DgLvipGG 57 (261)
T PRK01175 2 ESIRVAVLRMEGTNCEDETVK----AFRR-LGVEPEYVHINDLA------------------A-ERKSVSDYDCLVIPGG 57 (261)
T ss_pred CCCEEEEEeCCCCCCHHHHHH----HHHH-CCCcEEEEeecccc------------------c-cccchhhCCEEEECCC
Confidence 457899988765554444443 4444 57788888776421 0 1245788999988765
No 84
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=80.34 E-value=8 Score=27.79 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=37.2
Q ss_pred EEeCCch--hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 52 IFYSMYG--HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 52 Iy~S~~G--nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|-.++.| +|...++.+.+..++ .|.++.+ +.+... .-.+.++.+++.++|.||+..-+
T Consensus 3 vtacp~G~Aht~lAae~L~~aA~~-~G~~i~V-E~qg~~--------------g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 3 VTACPTGIAHTFMAAEALEKAAKK-RGWEVKV-ETQGSV--------------GAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred EecCCCcHHHHHHHHHHHHHHHHH-CCCeEEE-EecCCc--------------CccCCCCHHHHHhCCEEEEeccC
Confidence 4445555 677778888888887 8887654 222210 00112346889999999998655
No 85
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=80.23 E-value=4.3 Score=28.35 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDS 73 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~ 73 (252)
.|+++++++..|.+..++..+.+.+.+
T Consensus 1 ~kilivC~~G~~~s~~l~~~l~~~~~~ 27 (85)
T cd05568 1 KKALVVCPSGIGTSRLLKSKLKKLFPE 27 (85)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHCCC
Confidence 379999999999999999999999975
No 86
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=77.22 E-value=24 Score=28.94 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=32.8
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEE-Eeccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLL-FGFPT 125 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II-~gsP~ 125 (252)
||||||-.-. ..|.-+++.+.+ .|+++++++..+. ..+++.++|+|| .|.|-
T Consensus 2 ~~iliid~~d-sf~~~i~~~l~~-----~g~~~~v~~~~~~---------------------~~~~l~~~d~iIi~gGp~ 54 (190)
T PRK06895 2 TKLLIINNHD-SFTFNLVDLIRK-----LGVPMQVVNVEDL---------------------DLDEVENFSHILISPGPD 54 (190)
T ss_pred cEEEEEeCCC-chHHHHHHHHHH-----cCCcEEEEECCcc---------------------ChhHhccCCEEEECCCCC
Confidence 7899988442 223336655543 4678888886542 134567899998 55774
No 87
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=77.21 E-value=3.7 Score=37.72 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=30.7
Q ss_pred CCceEEEEEeCC-chhHHHHHHHHHHhccccCC---ceEEEEECCCC
Q 040588 45 GQLKIFIIFYSM-YGHVEILARRMKKGVDSIDG---VEGVLYRVPET 87 (252)
Q Consensus 45 ~~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G---~ev~l~~l~~~ 87 (252)
.||||||++.|- .|+ .+.|++|.+.+++ .+ ++++++|+-+.
T Consensus 4 ~~~~vlil~~~~G~GH-~~aA~al~~~~~~-~~~~~~~~~~~D~~~~ 48 (391)
T PRK13608 4 QNKKILIITGSFGNGH-MQVTQSIVNQLND-MNLDHLSVIEHDLFME 48 (391)
T ss_pred CCceEEEEECCCCchH-HHHHHHHHHHHHh-hCCCCceEEEeehHHh
Confidence 468999999885 566 6799999999976 33 56777776543
No 88
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=75.38 E-value=46 Score=27.61 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=47.9
Q ss_pred CceEEEEEeC-----CchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEE
Q 040588 46 QLKIFIIFYS-----MYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLL 120 (252)
Q Consensus 46 ~~kIlIIy~S-----~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II 120 (252)
|+||.||= | .+|--|..++.+...+.+ .|.+++++...+..+ . ...+-..++.+-
T Consensus 1 mkkIaIiG-trGIPa~YGGfET~ve~L~~~l~~-~g~~v~Vyc~~~~~~-----------------~-~~~~y~gv~l~~ 60 (185)
T PF09314_consen 1 MKKIAIIG-TRGIPARYGGFETFVEELAPRLVS-KGIDVTVYCRSDYYP-----------------Y-KEFEYNGVRLVY 60 (185)
T ss_pred CceEEEEe-CCCCCcccCcHHHHHHHHHHHHhc-CCceEEEEEccCCCC-----------------C-CCcccCCeEEEE
Confidence 56777764 4 379999999999999988 799999987765421 0 133445667777
Q ss_pred EeccccCCCchHHHHHHH
Q 040588 121 FGFPTRFGSMASQMKAFF 138 (252)
Q Consensus 121 ~gsP~y~g~~~~~~k~fl 138 (252)
+..|. .|.....+-.++
T Consensus 61 i~~~~-~g~~~si~yd~~ 77 (185)
T PF09314_consen 61 IPAPK-NGSAESIIYDFL 77 (185)
T ss_pred eCCCC-CCchHHHHHHHH
Confidence 77764 444444444443
No 89
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=73.75 E-value=9.6 Score=31.67 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=30.0
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
|||+||-+- .||...+++++.+ .|+++++++ + .+++.++|+||+
T Consensus 1 m~i~iid~g-~gn~~s~~~~l~~-----~g~~~~~v~--~-----------------------~~~~~~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTG-CANLSSVKFAIER-----LGYEPVVSR--D-----------------------PDVILAADKLFL 44 (196)
T ss_pred CeEEEEeCC-CchHHHHHHHHHH-----CCCeEEEEC--C-----------------------HHHhCCCCEEEE
Confidence 688888754 5788877775543 466666653 2 345677899998
No 90
>PRK09065 glutamine amidotransferase; Provisional
Probab=73.53 E-value=34 Score=29.30 Aligned_cols=58 Identities=10% Similarity=-0.008 Sum_probs=32.9
Q ss_pred CceEEEEEe-CCchhHH----HHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEE
Q 040588 46 QLKIFIIFY-SMYGHVE----ILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLL 120 (252)
Q Consensus 46 ~~kIlIIy~-S~~GnT~----~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II 120 (252)
|+||+|+-. ++.-..+ ...+.+...+.. .+.+++++++.+.. ...++.++|+||
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------------~~p~~~~~dgvv 59 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGL-AEQPVVVVRVFAGE--------------------PLPAPDDFAGVI 59 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhcc-CCceEEEEeccCCC--------------------CCCChhhcCEEE
Confidence 567877743 3211111 134444455555 67888888887531 123567789887
Q ss_pred Ee-cc
Q 040588 121 FG-FP 124 (252)
Q Consensus 121 ~g-sP 124 (252)
+. +|
T Consensus 60 i~Gg~ 64 (237)
T PRK09065 60 ITGSW 64 (237)
T ss_pred EeCCC
Confidence 76 55
No 91
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=73.47 E-value=17 Score=26.62 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=38.0
Q ss_pred EEEEeCCch--hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 50 FIIFYSMYG--HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 50 lIIy~S~~G--nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
++|...++| +|..+++.+.+.+++ .|.++.+..-...- -...++.+++.++|.||+..-+
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~-~g~~~~ve~~~~~g---------------~~~~l~~~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKK-LGWEIKVETQGSLG---------------IENELTAEDIAEADAVILAADV 63 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecCcC---------------ccCcCCHHHHhhCCEEEEecCC
Confidence 344444544 677778888888888 89876654322210 0112234789999999998765
No 92
>PRK11914 diacylglycerol kinase; Reviewed
Probab=72.89 E-value=6.1 Score=35.05 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=30.3
Q ss_pred CCCceEEEEEeC--CchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 44 TGQLKIFIIFYS--MYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 44 ~~~~kIlIIy~S--~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
.+|+|+++||-. ..|...+..+.+.+.+++ .|.+++++...
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~ 48 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGT 48 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeC
Confidence 457899999854 456677888888888887 78777765543
No 93
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=72.62 E-value=9.8 Score=32.03 Aligned_cols=26 Identities=12% Similarity=0.071 Sum_probs=19.0
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
...+.++|.|||.||. .++.|++.+.
T Consensus 47 ~~~~~~~d~iiftS~~-------av~~~~~~~~ 72 (249)
T PRK05928 47 QLAALGADWVIFTSKN-------AVEFLLSALK 72 (249)
T ss_pred HhhCCCCCEEEEECHH-------HHHHHHHHHH
Confidence 3567889999999975 4566666553
No 94
>PRK04155 chaperone protein HchA; Provisional
Probab=69.87 E-value=32 Score=30.56 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=23.8
Q ss_pred ceEEEEEeCCc------hh---H-HHHHHHH--HHhccccCCceEEEEECCC
Q 040588 47 LKIFIIFYSMY------GH---V-EILARRM--KKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S~~------Gn---T-~~la~~i--~~~l~~~~G~ev~l~~l~~ 86 (252)
+|||||-.|.. |. | -...|.+ ...+++ +|++|++..+..
T Consensus 50 kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~-AG~eVdiAS~~G 100 (287)
T PRK04155 50 KKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHK-AGFEFDVATLSG 100 (287)
T ss_pred CeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 39999987631 22 1 1122222 456666 899999998754
No 95
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=69.84 E-value=18 Score=31.78 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=30.5
Q ss_pred ceEEEEEeCC---chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 47 LKIFIIFYSM---YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S~---~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|||.|+++-. +--+-+-++.+++.+++ .|.++++++..+
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~i~~al~~-~g~~~~~i~~~~ 42 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGERVKKALEK-LGYEVTVFDVDE 42 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHHHHHHHHH-cCCeEEEEccCc
Confidence 5899999764 34466778888888888 899999998764
No 96
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=69.30 E-value=21 Score=30.14 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=32.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||||.||-+. .||-..+++++.. .|+++.+++. .+++.++|+||+..|-
T Consensus 1 ~~~v~iid~~-~GN~~sl~~al~~-----~g~~v~vv~~-------------------------~~~l~~~d~iIlPG~g 49 (210)
T CHL00188 1 MMKIGIIDYS-MGNLHSVSRAIQQ-----AGQQPCIINS-------------------------ESELAQVHALVLPGVG 49 (210)
T ss_pred CcEEEEEEcC-CccHHHHHHHHHH-----cCCcEEEEcC-------------------------HHHhhhCCEEEECCCC
Confidence 6788777654 6787777766654 4667766632 2345679999987753
No 97
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=68.54 E-value=64 Score=27.45 Aligned_cols=59 Identities=24% Similarity=0.341 Sum_probs=40.8
Q ss_pred CceEEEEEeCC--------chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccC
Q 040588 46 QLKIFIIFYSM--------YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHAD 117 (252)
Q Consensus 46 ~~kIlIIy~S~--------~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD 117 (252)
.+|++|++... +|+= ++.+...+.+ .|.+.+++++.+- ++|. .+++..||
T Consensus 4 ~kr~Alf~at~dsefvk~~yGgy---~nvfvsllg~-ege~wd~frV~~g----------------efP~--~~Dl~ky~ 61 (245)
T KOG3179|consen 4 QKRIALFLATPDSEFVKKAYGGY---FNVFVSLLGD-EGEQWDLFRVIDG----------------EFPQ--EEDLEKYD 61 (245)
T ss_pred ceeEEEEecCCchhhhhhhhcCH---HHHHHHHhcc-cCceeEEEEEecC----------------CCCC--hhhhhhhc
Confidence 36788888764 3443 3344455555 6788899998763 3443 57889999
Q ss_pred eEEEecccc
Q 040588 118 GLLFGFPTR 126 (252)
Q Consensus 118 ~II~gsP~y 126 (252)
++||....|
T Consensus 62 gfvIsGS~~ 70 (245)
T KOG3179|consen 62 GFVISGSKH 70 (245)
T ss_pred eEEEeCCcc
Confidence 999987776
No 98
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=67.47 E-value=37 Score=28.86 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=29.0
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
|||+|+-+-..-+...+++++. + .|++++++...+ ..+.++|+|||..-
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~----~-~G~~~~~i~~~~------------------------~~l~~~d~lilpGG 49 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALR----L-LGVDAEIVWYED------------------------GSLPDYDGVVLPGG 49 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHH----H-CCCeEEEEecCC------------------------CCCCCCCEEEECCC
Confidence 5888877643222334555544 3 577777774432 12567999988764
No 99
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=66.70 E-value=24 Score=30.00 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=24.3
Q ss_pred CceEEEEEeCC---chhHHHHHH--HHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSM---YGHVEILAR--RMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~---~GnT~~la~--~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+||+||-.|. .|. ...| .-...+++ .|+++++.....
T Consensus 1 ~kkVlills~~~~~dG~--e~~E~~~P~~~L~~-aG~~V~~aSp~~ 43 (217)
T PRK11780 1 MKKIAVILSGCGVYDGS--EIHEAVLTLLALDR-AGAEAVCFAPDI 43 (217)
T ss_pred CCEEEEEEccCCCCCCE--ehhHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 56899888652 343 2333 23466666 799999988644
No 100
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=66.58 E-value=15 Score=29.08 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=31.1
Q ss_pred ceEEEEEeCCc-hhHHHHHHHHHHhccccCCce---EEEEECCCC
Q 040588 47 LKIFIIFYSMY-GHVEILARRMKKGVDSIDGVE---GVLYRVPET 87 (252)
Q Consensus 47 ~kIlIIy~S~~-GnT~~la~~i~~~l~~~~G~e---v~l~~l~~~ 87 (252)
.||+||..+-+ --|+.|.+...+.+.+ .|++ ++++.++-.
T Consensus 8 ~ri~IV~s~fn~~I~~~Ll~ga~~~l~~-~gv~~~~i~v~~VPGa 51 (141)
T PLN02404 8 LRFGVVVARFNEIITKNLLEGALETFKR-YSVKEENIDVVWVPGS 51 (141)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHH-cCCCccceEEEEcCcH
Confidence 59999997754 4589999999999987 7874 677777654
No 101
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=66.57 E-value=38 Score=31.86 Aligned_cols=48 Identities=15% Similarity=-0.012 Sum_probs=31.7
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCC
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGT 163 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~ 163 (252)
...+.+||++|.|.-..+....+. +.|+-.+. ..+.||++.+++.+-+
T Consensus 112 ~~~l~~aDlvI~gGG~lfqD~y~~-~~~~y~l~-----A~l~gkpv~l~gqsiG 159 (426)
T PRK10017 112 VRLLSGYDAIIQVGGSFFVDLYGV-PQFEHALC-----AFMAKKPLYMIGHSVG 159 (426)
T ss_pred HHHHHhCCEEEECCCCccccCccc-HHHHHHHH-----HHHcCCCEEEECCcCC
Confidence 356899999999998887765443 33332111 2467899888876544
No 102
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=65.61 E-value=8.1 Score=31.65 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=40.0
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 47 LKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 47 ~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
.+-++++|++ +|.|. +|.+|+..+-+ .|..|.++...+. +...+-...+...... ...+..+|.+||-=
T Consensus 47 ~~~l~l~G~~G~GKTh-La~ai~~~~~~-~g~~v~f~~~~~L-----~~~l~~~~~~~~~~~~-~~~l~~~dlLilDD 116 (178)
T PF01695_consen 47 GENLILYGPPGTGKTH-LAVAIANEAIR-KGYSVLFITASDL-----LDELKQSRSDGSYEEL-LKRLKRVDLLILDD 116 (178)
T ss_dssp --EEEEEESTTSSHHH-HHHHHHHHHHH-TT--EEEEEHHHH-----HHHHHCCHCCTTHCHH-HHHHHTSSCEEEET
T ss_pred CeEEEEEhhHhHHHHH-HHHHHHHHhcc-CCcceeEeecCce-----eccccccccccchhhh-cCccccccEecccc
Confidence 3458888875 79996 56666666655 6888888887653 1111101111122233 67889999999864
No 103
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=65.61 E-value=22 Score=35.26 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=43.2
Q ss_pred ceEEEEEeCCch--hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 47 LKIFIIFYSMYG--HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 47 ~kIlIIy~S~~G--nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
+|+++|-.+++| +|...++++.+.+++ .|.++.+ +.+... .-.+.++.+++.+||.||+..-
T Consensus 164 ~~i~avtacp~G~aht~mAae~L~~aA~~-~g~~i~v-E~~g~~--------------g~~~~lt~~~i~~Ad~Viia~d 227 (631)
T PRK09765 164 PTIVCVTACPAGIAHTYMAAEYLEKAGRK-LGVNVYV-EKQGAN--------------GIEGRLTADQLNSATACIFAAE 227 (631)
T ss_pred ceEEEEEeCCCcchHHHHHHHHHHHHHHH-CCCeEEE-EecCCc--------------CCCCCCCHHHHHhCCEEEEeec
Confidence 579988888876 677788888888888 7877654 222210 0011234688999999999865
Q ss_pred c
Q 040588 125 T 125 (252)
Q Consensus 125 ~ 125 (252)
+
T Consensus 228 ~ 228 (631)
T PRK09765 228 V 228 (631)
T ss_pred C
Confidence 4
No 104
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=65.00 E-value=20 Score=30.23 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=35.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||+|+||-+- .||-+.+.+++.+ .|+++.+.+ +.+++..||.||+-.
T Consensus 1 m~~i~IIDyg-~GNL~Sv~~Aler-----~G~~~~vs~-------------------------d~~~i~~AD~liLPG-- 47 (204)
T COG0118 1 MMMVAIIDYG-SGNLRSVKKALER-----LGAEVVVSR-------------------------DPEEILKADKLILPG-- 47 (204)
T ss_pred CCEEEEEEcC-cchHHHHHHHHHH-----cCCeeEEec-------------------------CHHHHhhCCEEEecC--
Confidence 5777777543 5777766655533 455555422 257789999999843
Q ss_pred cCCCchHHHHHHH
Q 040588 126 RFGSMASQMKAFF 138 (252)
Q Consensus 126 y~g~~~~~~k~fl 138 (252)
-|..+..|+.+-
T Consensus 48 -VGaf~~am~~L~ 59 (204)
T COG0118 48 -VGAFGAAMANLR 59 (204)
T ss_pred -CCCHHHHHHHHH
Confidence 355555555443
No 105
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=63.95 E-value=16 Score=29.02 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=46.2
Q ss_pred CCceEEEEEeCCc-hhHHHHHHHHHHhccccCCc---eEEEEECCCCCCHHHHhcccCCCCCCCCcccc--hhhhhccCe
Q 040588 45 GQLKIFIIFYSMY-GHVEILARRMKKGVDSIDGV---EGVLYRVPETLPAEVLEQMKVPQKGIEVPVIA--VDDLVHADG 118 (252)
Q Consensus 45 ~~~kIlIIy~S~~-GnT~~la~~i~~~l~~~~G~---ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~--~~~l~~aD~ 118 (252)
...||+||...-+ -.|+.|++...+.+.+ .|+ .++++.++-.. ++|... .-+-..+|+
T Consensus 2 ~~~ri~IV~s~~n~~i~~~ll~~a~~~l~~-~g~~~~~i~~~~VPGa~---------------ElP~a~~~l~~~~~~Da 65 (144)
T PF00885_consen 2 SGLRIAIVVSRFNEEITDRLLEGALEELKR-HGVAEENIEVIRVPGAF---------------ELPLAAKRLAESGRYDA 65 (144)
T ss_dssp TTEEEEEEEESTTHHHHHHHHHHHHHHHHH-TTTTGGCEEEEEESSGG---------------GHHHHHHHHHHCSTESE
T ss_pred CCCEEEEEEEeccHHHHHHHHHHHHHHHHH-cCCCccceEEEEcCCHH---------------HHHHHHHHHhcccCccE
Confidence 4568999997754 4689999999999988 777 78899987652 111110 112245898
Q ss_pred EEEeccccCCCch
Q 040588 119 LLFGFPTRFGSMA 131 (252)
Q Consensus 119 II~gsP~y~g~~~ 131 (252)
||.-.-++-|..+
T Consensus 66 vi~lG~VI~G~T~ 78 (144)
T PF00885_consen 66 VIALGCVIRGETD 78 (144)
T ss_dssp EEEEEEEE--SST
T ss_pred EEEeccccCCCch
Confidence 8877666665543
No 106
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=63.81 E-value=51 Score=27.70 Aligned_cols=86 Identities=19% Similarity=0.098 Sum_probs=44.1
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC-CCHHHHhcccCCCCCCCCcccc--hhhhhccCeEEEec
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET-LPAEVLEQMKVPQKGIEVPVIA--VDDLVHADGLLFGF 123 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~-~p~~~~~~~~~~~~~d~~~~~~--~~~l~~aD~II~gs 123 (252)
|||.||-.|.. +-..|++++.. .|.+|+-+-=... .+. ....|..+. |+-+.+ .+++...|+||-+.
T Consensus 1 mKIaiIgAsG~-----~Gs~i~~EA~~-RGHeVTAivRn~~K~~~---~~~~~i~q~-Difd~~~~a~~l~g~DaVIsA~ 70 (211)
T COG2910 1 MKIAIIGASGK-----AGSRILKEALK-RGHEVTAIVRNASKLAA---RQGVTILQK-DIFDLTSLASDLAGHDAVISAF 70 (211)
T ss_pred CeEEEEecCch-----hHHHHHHHHHh-CCCeeEEEEeChHhccc---cccceeecc-cccChhhhHhhhcCCceEEEec
Confidence 79999998853 22344444444 5667664431111 110 011122222 222222 37889999999998
Q ss_pred cccCCCchHHHHHHHHhhh
Q 040588 124 PTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~ 142 (252)
-.|+..--.....-++.+.
T Consensus 71 ~~~~~~~~~~~~k~~~~li 89 (211)
T COG2910 71 GAGASDNDELHSKSIEALI 89 (211)
T ss_pred cCCCCChhHHHHHHHHHHH
Confidence 8886444332333344443
No 107
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=63.68 E-value=27 Score=26.36 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=50.3
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhh-hccCeEEEecccc
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDL-VHADGLLFGFPTR 126 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l-~~aD~II~gsP~y 126 (252)
+|+||=.|.+- .+.+..+.+.+.+ .|.++..++.+..... ...| ++. ..++ ..-|.+++..|-
T Consensus 2 siAVvGaS~~~--~~~g~~v~~~l~~-~G~~v~~Vnp~~~~i~----G~~~------y~s--l~e~p~~iDlavv~~~~- 65 (116)
T PF13380_consen 2 SIAVVGASDNP--GKFGYRVLRNLKA-AGYEVYPVNPKGGEIL----GIKC------YPS--LAEIPEPIDLAVVCVPP- 65 (116)
T ss_dssp EEEEET--SST--TSHHHHHHHHHHH-TT-EEEEESTTCSEET----TEE-------BSS--GGGCSST-SEEEE-S-H-
T ss_pred EEEEEcccCCC--CChHHHHHHHHHh-CCCEEEEECCCceEEC----cEEe------ecc--ccCCCCCCCEEEEEcCH-
Confidence 56777777531 1234444444444 5666666655432100 0011 111 2223 578999998874
Q ss_pred CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 040588 127 FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 127 ~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
..+-.+++.+.. .|-..++|.++ . .-.++.+.+..+|+.+++.
T Consensus 66 -----~~~~~~v~~~~~-------~g~~~v~~~~g-~-------~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 66 -----DKVPEIVDEAAA-------LGVKAVWLQPG-A-------ESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -----HHHHHHHHHHHH-------HT-SEEEE-TT-S---------HHHHHHHHHTT-EEEES
T ss_pred -----HHHHHHHHHHHH-------cCCCEEEEEcc-h-------HHHHHHHHHHHcCCEEEeC
Confidence 555666666542 24455555542 1 1245677788899999975
No 108
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=63.14 E-value=14 Score=31.54 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=47.2
Q ss_pred ccccCCCCCCCCceEE-EEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhh
Q 040588 35 QNQLTTTSTTGQLKIF-IIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDL 113 (252)
Q Consensus 35 ~~~~~~~~~~~~~kIl-IIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l 113 (252)
+||+.-. .++|+ |-+.|......-..+...+.+++ .|++++-+++.... ...+ ...+
T Consensus 25 ~n~l~g~----~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~-lg~~v~~L~l~~~~----------------~~~I-e~~l 82 (224)
T COG3340 25 ANFLQGK----RKTIAFIPTASVDSEDDFYVEKVRNALAK-LGLEVSELHLSKPP----------------LAAI-ENKL 82 (224)
T ss_pred HHHhcCC----CceEEEEecCccccchHHHHHHHHHHHHH-cCCeeeeeeccCCC----------------HHHH-HHhh
Confidence 4565432 34665 66777777777788888999988 89888877776531 1222 4567
Q ss_pred hccCeEEEecc
Q 040588 114 VHADGLLFGFP 124 (252)
Q Consensus 114 ~~aD~II~gsP 124 (252)
.++|.|++|.-
T Consensus 83 ~~~d~IyVgGG 93 (224)
T COG3340 83 MKADIIYVGGG 93 (224)
T ss_pred hhccEEEECCc
Confidence 78999999853
No 109
>PRK10125 putative glycosyl transferase; Provisional
Probab=62.94 E-value=16 Score=33.83 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=34.6
Q ss_pred ceEEEEEeC-CchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 47 LKIFIIFYS-MYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 47 ~kIlIIy~S-~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
||||-|..+ ..|.|++++..+++.+.+ .|.++.+......
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~-~G~~~~i~~~~~~ 41 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQ-QGLASHFVYGYGK 41 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHh-cCCeEEEEEecCC
Confidence 689877755 579999999999999988 8999999988764
No 110
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=61.65 E-value=21 Score=24.58 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=30.0
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+|-+ +++.-.++..+.+.+.+.+.+ .|++++++++.+
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~~~-~~i~~ei~~~~~ 38 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAAEE-LGIEVEIIDIED 38 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHHHH-TTEEEEEEETTT
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHHHh-cCCeEEEEEccC
Confidence 57777 766678888888888888877 688999999843
No 111
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=61.44 E-value=51 Score=26.21 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=62.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcc-cCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQM-KVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~-~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
||||.+|=. | .|...+++.+.+ .|.++..++............. .... . ..+-+.++|.||+..|
T Consensus 1 m~~Ig~IGl---G---~mG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~g~~~~~------s-~~e~~~~~dvvi~~v~ 66 (163)
T PF03446_consen 1 MMKIGFIGL---G---NMGSAMARNLAK-AGYEVTVYDRSPEKAEALAEAGAEVAD------S-PAEAAEQADVVILCVP 66 (163)
T ss_dssp -BEEEEE-----S---HHHHHHHHHHHH-TTTEEEEEESSHHHHHHHHHTTEEEES------S-HHHHHHHBSEEEE-SS
T ss_pred CCEEEEEch---H---HHHHHHHHHHHh-cCCeEEeeccchhhhhhhHHhhhhhhh------h-hhhHhhcccceEeecc
Confidence 567776642 3 244444555454 6888999886532111111110 0000 0 1344678899999887
Q ss_pred ccCCCchHHHHHHHHh--hhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCc
Q 040588 125 TRFGSMASQMKAFFDS--TFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGY 191 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~--l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~ 191 (252)
- +..++..+.. +.. ...+|+.+.-.+|. . -.....+.+.+..+|..+++.+.
T Consensus 67 ~-----~~~v~~v~~~~~i~~----~l~~g~iiid~sT~-----~-p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 67 D-----DDAVEAVLFGENILA----GLRPGKIIIDMSTI-----S-PETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp S-----HHHHHHHHHCTTHGG----GS-TTEEEEE-SS--------HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred c-----chhhhhhhhhhHHhh----ccccceEEEecCCc-----c-hhhhhhhhhhhhhccceeeeeee
Confidence 5 4567777776 322 12345544333332 1 23567888888999999988654
No 112
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=60.59 E-value=15 Score=33.09 Aligned_cols=97 Identities=22% Similarity=0.235 Sum_probs=58.4
Q ss_pred CCCCCCCccccccc---cCCCCCCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCC
Q 040588 24 SNPDGVSSNLDQNQ---LTTTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQ 100 (252)
Q Consensus 24 ~~~~~~~~~~~~~~---~~~~~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~ 100 (252)
-|--|||.-++-+| |.+..--.-++|-++|.|..-|...+++.+.+.++. .|.++....+....
T Consensus 134 ~NvTGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~-~Gl~vve~~v~~~n------------ 200 (322)
T COG2984 134 GNVTGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARK-AGLEVVEAAVTSVN------------ 200 (322)
T ss_pred CceeecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHH-CCCEEEEEecCccc------------
Confidence 46666666554333 222222233567777777778999999999999998 89888777765531
Q ss_pred CCCCCcccchhhh-hccCeEEEeccccCCCchHHHHHHHHh
Q 040588 101 KGIEVPVIAVDDL-VHADGLLFGFPTRFGSMASQMKAFFDS 140 (252)
Q Consensus 101 ~~d~~~~~~~~~l-~~aD~II~gsP~y~g~~~~~~k~fld~ 140 (252)
+++.. ...+ ...|.|++ |+++-..+ .+..++..
T Consensus 201 ---di~~a-~~~l~g~~d~i~~--p~dn~i~s-~~~~l~~~ 234 (322)
T COG2984 201 ---DIPRA-VQALLGKVDVIYI--PTDNLIVS-AIESLLQV 234 (322)
T ss_pred ---ccHHH-HHHhcCCCcEEEE--ecchHHHH-HHHHHHHH
Confidence 22222 2233 55666654 66665554 34545443
No 113
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=60.55 E-value=59 Score=27.46 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=28.6
Q ss_pred ceEEEEEeCCchhHHH-HHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 47 LKIFIIFYSMYGHVEI-LARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~-la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
|||+||.+-. .|++. +++++.+ . .|+++..+...+ .++.++|+|||..
T Consensus 1 ~~v~Vl~~~G-~n~~~d~~~a~~~---~-~G~~~~~v~~~~------------------------~~l~~~D~lvipG 49 (219)
T PRK03619 1 MKVAVIVFPG-SNCDRDMARALRD---L-LGAEPEYVWHKE------------------------TDLDGVDAVVLPG 49 (219)
T ss_pred CEEEEEecCC-cChHHHHHHHHHh---c-CCCeEEEEecCc------------------------CCCCCCCEEEECC
Confidence 5788877654 44433 5555542 3 566766654322 2356889988875
No 114
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=60.16 E-value=8.5 Score=34.15 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=32.7
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|||+++..+..|.++..+..+++.+.+ .|.+|+++...
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~-~G~~v~v~~~~ 38 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALAR-RGHEVHFITSS 38 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHh-cCCceEEEecC
Confidence 689999887788888999999999998 89999988654
No 115
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=59.65 E-value=42 Score=29.36 Aligned_cols=42 Identities=7% Similarity=-0.096 Sum_probs=29.8
Q ss_pred CCCceEEEEEeCC---chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 44 TGQLKIFIIFYSM---YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 44 ~~~~kIlIIy~S~---~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+++++|.|++++. ....-.-++.+.+.+++ .|+++++++..+
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~-~g~~v~~i~~~~ 46 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALRE-AGYDAHPIDPGE 46 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHH-CCCEEEEEecCc
Confidence 3456899999774 23433455777788887 899999988664
No 116
>PRK13054 lipid kinase; Reviewed
Probab=58.98 E-value=25 Score=31.13 Aligned_cols=40 Identities=10% Similarity=-0.116 Sum_probs=25.1
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
++|||+++||-. .+...+....+.+.+.+ .|.+++++.-.
T Consensus 1 ~~~~~~~~i~N~-~~~~~~~~~~~~~~l~~-~g~~~~v~~t~ 40 (300)
T PRK13054 1 MTFPKSLLILNG-KSAGNEELREAVGLLRE-EGHTLHVRVTW 40 (300)
T ss_pred CCCceEEEEECC-CccchHHHHHHHHHHHH-cCCEEEEEEec
Confidence 357788888863 33334555556667777 78877765443
No 117
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=58.83 E-value=26 Score=29.04 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=21.9
Q ss_pred HHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 67 MKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 67 i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
+.+.+++ .|.+++++.+.+ .+++.++|+|||...
T Consensus 19 ~~~~l~~-~g~~~~~~~~~~-----------------------~~~l~~~d~iii~GG 52 (200)
T PRK13527 19 LKRALDE-LGIDGEVVEVRR-----------------------PGDLPDCDALIIPGG 52 (200)
T ss_pred HHHHHHh-cCCCeEEEEeCC-----------------------hHHhccCCEEEECCC
Confidence 3333444 577788777753 245678999988763
No 118
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=58.50 E-value=15 Score=33.26 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=28.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCce-EEEEECC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVE-GVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~e-v~l~~l~ 85 (252)
+|||||++.|-.+--...|+++++.+++ .|.+ +.+.+..
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~-~g~~~~~~~d~~ 43 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQ-KGIKDVIVCDLF 43 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHh-cCCCcEEEEEhH
Confidence 5799999988643345688999999987 6765 4444544
No 119
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=58.43 E-value=19 Score=32.47 Aligned_cols=60 Identities=23% Similarity=0.189 Sum_probs=38.8
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.+||+.||..|..| ..+|+.|++.+.. +++...... .+.+.+...+.+.+||++||...
T Consensus 2 ~~m~iaii~~t~~G--~~la~~l~~~l~~------~~~~~~~~~-------------~~~~~~~~~~~f~~~d~iIfI~A 60 (315)
T PRK05788 2 STMKIAIICATERG--RDLAERLKAKLKA------DCYTSEKLE-------------YEGFADAFEEAFGCYDALIFIMA 60 (315)
T ss_pred CcceEEEEEECccH--HHHHHHHHHhccc------ceecchhhc-------------cCCHHHHHHHHHhcCCeEEEEEC
Confidence 45899999999888 6789999888854 223222110 01122222466788999999876
Q ss_pred c
Q 040588 125 T 125 (252)
Q Consensus 125 ~ 125 (252)
+
T Consensus 61 ~ 61 (315)
T PRK05788 61 T 61 (315)
T ss_pred h
Confidence 5
No 120
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=58.03 E-value=15 Score=32.26 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=31.2
Q ss_pred ceEEEEEeCCc-hhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 47 LKIFIIFYSMY-GHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S~~-GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|||+++..+.. |..++.+..+++.+.+ .|.+++++....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~-~G~~v~v~~~~~ 40 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQA-AGVDSTMLVQEK 40 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHh-cCCceeEEEeec
Confidence 79999887753 7777888888899988 788888887554
No 121
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=57.51 E-value=27 Score=31.20 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=32.4
Q ss_pred CCceEEEEEeC--CchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 45 GQLKIFIIFYS--MYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 45 ~~~kIlIIy~S--~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
.|+|+.+||-- ..|.-++..+.+.+.+++ .|.+++.+.....
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~-~g~~~~~~~t~~~ 44 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLLREVEELLEE-AGHELSVRVTEEA 44 (301)
T ss_pred CCceEEEEEcccccccchhhHHHHHHHHHHh-cCCeEEEEEeecC
Confidence 36788888844 456788999999999998 8888877776553
No 122
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=57.45 E-value=72 Score=27.12 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=42.0
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE-ecccc
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF-GFPTR 126 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~-gsP~y 126 (252)
.|.-|| ++|-+..++. .+++ .|.+|++-.+.+.. ..++.+.|.++|+||+ +...
T Consensus 15 ~~~~~~--~~~~~~~~~~----~L~~-~gf~V~~~~~~d~~-----------------~~~~~~~L~~~D~lV~~~~~~- 69 (215)
T cd03142 15 AVAALY--PDGMHGTIAA----ALAE-YGFDVQTATLDEPE-----------------HGLTEEVLAETDVLLWWGHIA- 69 (215)
T ss_pred hhHhhC--cchHHHHHHH----HHHh-cCcEEEEEeccCcc-----------------ccCCHhHHhcCCEEEEeCCCC-
Confidence 355566 6776665554 4444 57888866555421 1123456899999998 4443
Q ss_pred CCCch-HHHHHHHHhhh
Q 040588 127 FGSMA-SQMKAFFDSTF 142 (252)
Q Consensus 127 ~g~~~-~~~k~fld~l~ 142 (252)
...++ .+.++|.+.+.
T Consensus 70 ~~~l~~eq~~~l~~~V~ 86 (215)
T cd03142 70 HDEVKDEIVERVHRRVL 86 (215)
T ss_pred cCcCCHHHHHHHHHHHH
Confidence 34454 47777777764
No 123
>PRK13059 putative lipid kinase; Reviewed
Probab=57.25 E-value=27 Score=30.87 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=28.8
Q ss_pred CceEEEEEeC--CchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYS--MYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S--~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+|+++||-. ..|...+..+.+.+.+.+ .|.++.++....
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~ 42 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISL 42 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccC
Confidence 5688888743 355666777888888887 788877766654
No 124
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=56.94 E-value=34 Score=30.28 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=35.3
Q ss_pred HHHHHHHHhccccCCceEEEEECCCCCCHHHHhcc-cCCCCCCCC-cccchhhhhccCeEEEecccc
Q 040588 62 ILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQM-KVPQKGIEV-PVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 62 ~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~-~~~~~~d~~-~~~~~~~l~~aD~II~gsP~y 126 (252)
.|...++..+++ .|..+.++...... ..+.... .+.. ++. .......+.++|.||++.|+.
T Consensus 13 liG~s~a~~l~~-~g~~v~i~g~d~~~-~~~~~a~~lgv~--d~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 13 LMGGSLARALKE-AGLVVRIIGRDRSA-ATLKAALELGVI--DELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred hHHHHHHHHHHH-cCCeEEEEeecCcH-HHHHHHhhcCcc--cccccchhhhhcccCCEEEEeccHH
Confidence 577778888887 78888888776531 1111111 1111 111 000135567799999999995
No 125
>PRK05637 anthranilate synthase component II; Provisional
Probab=56.76 E-value=45 Score=28.01 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=22.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|.||++|- ...|+|.-+++.+.+ .|++++++.-.
T Consensus 1 ~~~il~iD-~~dsf~~nl~~~l~~-----~g~~~~v~~~~ 34 (208)
T PRK05637 1 MTHVVLID-NHDSFVYNLVDAFAV-----AGYKCTVFRNT 34 (208)
T ss_pred CCEEEEEE-CCcCHHHHHHHHHHH-----CCCcEEEEeCC
Confidence 45777665 456888887777764 46677777653
No 126
>PRK13337 putative lipid kinase; Reviewed
Probab=56.59 E-value=31 Score=30.53 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=28.0
Q ss_pred CceEEEEEeCCch--hHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYG--HVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~G--nT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+|+++||-...| ...+..+.+.+.+.+ .|.+++++....
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~ 42 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTG 42 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecC
Confidence 5788888865544 445666777777877 788877776653
No 127
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.09 E-value=22 Score=31.81 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=31.0
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEE
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYR 83 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~ 83 (252)
+.|+|+++||-...+.+..+++.+.+.+++ .|+++.+..
T Consensus 1 ~~~kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~ 39 (305)
T PRK02645 1 MQLKQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGP 39 (305)
T ss_pred CCcCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 457789999987667777889999888877 788876654
No 128
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=56.06 E-value=44 Score=30.16 Aligned_cols=75 Identities=12% Similarity=0.219 Sum_probs=48.9
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc-
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR- 126 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y- 126 (252)
.++||. +|++...|..+++.+++ .|+++++++++...|. |...+ .+.+.+++.||+.-=-+
T Consensus 203 di~iva---~G~~~~~a~eAa~~L~~-~Gi~v~vi~~~~l~Pl-------------d~~~i-~~~~~~~~~vv~vEe~~~ 264 (327)
T PRK09212 203 DVTIVT---FSIQVKLALEAAELLEK-EGISVEVIDLRTLRPL-------------DTETI-IESVKKTNRLVVVEEGWP 264 (327)
T ss_pred CEEEEE---ccHHHHHHHHHHHHHHh-cCCcEEEEEEecCCCC-------------CHHHH-HHHHHhCCeEEEEcCCCC
Confidence 555554 56666666666666766 7899999999876442 11112 45567788777664433
Q ss_pred CCCchHHHHHHHHh
Q 040588 127 FGSMASQMKAFFDS 140 (252)
Q Consensus 127 ~g~~~~~~k~fld~ 140 (252)
.|++.+++..++..
T Consensus 265 ~gGlg~~la~~l~~ 278 (327)
T PRK09212 265 FAGVGAEIAALIMK 278 (327)
T ss_pred CCCHHHHHHHHHHH
Confidence 57788888888865
No 129
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=55.20 E-value=22 Score=29.92 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=48.0
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
..+.++|.++..++-.++..+.+.+++ .+++.+..-+... |+.....+.+..+|.+|+-+-.+
T Consensus 129 k~vi~L~d~~vs~SGel~~~i~~~mK~-~~I~g~~~lvk~~----------------D~eLk~~e~VaTsD~~IIdsv~~ 191 (211)
T COG2454 129 KSVIFLFDAPVSKSGELAGRIEEKMKS-LGIPGEASLVKNA----------------DFELKELEVVATSDSGIIDSVKR 191 (211)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHh-cCCCceeEeccCc----------------CHHHHhcCceeecCeeeeeehhH
Confidence 456777777777788889889888877 6776665555432 11111134567899999999766
Q ss_pred CCCchHHHH
Q 040588 127 FGSMASQMK 135 (252)
Q Consensus 127 ~g~~~~~~k 135 (252)
+-++|..+-
T Consensus 192 vVdi~~~i~ 200 (211)
T COG2454 192 VVDIPAEIM 200 (211)
T ss_pred HHhhHHHHH
Confidence 666665443
No 130
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=55.09 E-value=42 Score=27.59 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=28.5
Q ss_pred EEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 50 FIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 50 lIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
+||-+ ..||+..+++.+.+ .|+++++++. ..++.++|+||+..|
T Consensus 2 ~i~d~-g~~~~~~~~~~l~~-----~g~~v~v~~~-------------------------~~~l~~~d~iiipG~ 45 (198)
T cd01748 2 AIIDY-GMGNLRSVANALER-----LGAEVIITSD-------------------------PEEILSADKLILPGV 45 (198)
T ss_pred EEEeC-CCChHHHHHHHHHH-----CCCeEEEEcC-------------------------hHHhccCCEEEECCC
Confidence 44443 35777777766653 5777777652 224567999999776
No 131
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=55.06 E-value=27 Score=32.14 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=37.9
Q ss_pred cccCCCCCCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhc
Q 040588 36 NQLTTTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVH 115 (252)
Q Consensus 36 ~~~~~~~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~ 115 (252)
+++.|..+ .+++|.||-+.. .|...++..+.+ .|.++.+++..+.. .. .+.+.+
T Consensus 89 ~~~~~~~~-~~~~I~IiGG~G-----lmG~slA~~l~~-~G~~V~~~d~~~~~------------------~~-~~~~~~ 142 (374)
T PRK11199 89 KGFKTLNP-DLRPVVIVGGKG-----QLGRLFAKMLTL-SGYQVRILEQDDWD------------------RA-EDILAD 142 (374)
T ss_pred hcccccCc-ccceEEEEcCCC-----hhhHHHHHHHHH-CCCeEEEeCCCcch------------------hH-HHHHhc
Confidence 34444444 456788775331 233344444444 57788888764320 11 244678
Q ss_pred cCeEEEecccc
Q 040588 116 ADGLLFGFPTR 126 (252)
Q Consensus 116 aD~II~gsP~y 126 (252)
+|.||++.|+.
T Consensus 143 aDlVilavP~~ 153 (374)
T PRK11199 143 AGMVIVSVPIH 153 (374)
T ss_pred CCEEEEeCcHH
Confidence 99999999986
No 132
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=54.66 E-value=62 Score=26.40 Aligned_cols=99 Identities=9% Similarity=-0.013 Sum_probs=47.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC--CCHHHHhcccCCCCCCCCcccchhhh--hccCeEEE
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET--LPAEVLEQMKVPQKGIEVPVIAVDDL--VHADGLLF 121 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~--~p~~~~~~~~~~~~~d~~~~~~~~~l--~~aD~II~ 121 (252)
.+||+|+-+. |....=+-...+.+++ .|.++++..+... .+..+ ...-.... + ...+++ .++|+|++
T Consensus 2 ~~~~~il~~~--g~~~~e~~~p~~~l~~-ag~~v~~~s~~~~~~~~v~s--s~G~~v~~-d---~~l~~~~~~~~D~l~i 72 (196)
T PRK11574 2 SASALVCLAP--GSEETEAVTTIDLLVR-GGIKVTTASVASDGNLEITC--SRGVKLLA-D---APLVEVADGDFDVIVL 72 (196)
T ss_pred CceEEEEeCC--CcchhhHhHHHHHHHH-CCCeEEEEEccCCCCceEEc--CCCCEEeC-C---CCHHHCCCCCCCEEEE
Confidence 4678877753 3322222334455555 5777887776421 11000 00000000 1 112333 46899988
Q ss_pred eccc---cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 122 GFPT---RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 122 gsP~---y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
.... ....-.+.+..||.+.. -+||.++.+++
T Consensus 73 pGG~~~~~~~~~~~~l~~~L~~~~-------~~g~~v~aic~ 107 (196)
T PRK11574 73 PGGIKGAECFRDSPLLVETVRQFH-------RSGRIVAAICA 107 (196)
T ss_pred CCCCchhhhhhhCHHHHHHHHHHH-------HCCCEEEEECH
Confidence 5421 11222345677776653 27788877775
No 133
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.39 E-value=1.1e+02 Score=26.26 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=15.4
Q ss_pred CceEEEEEeCCchhHHHHHHHHH
Q 040588 46 QLKIFIIFYSMYGHVEILARRMK 68 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~ 68 (252)
||||++||.-.+|. ++.+.++
T Consensus 1 ~mki~vlt~g~yG~--R~~~nl~ 21 (224)
T COG1810 1 MMKILVLTDGEYGK--RAVNNLA 21 (224)
T ss_pred CcEEEEEeeccchH--HHHHhHh
Confidence 79999999877884 4555544
No 134
>PRK13055 putative lipid kinase; Reviewed
Probab=54.13 E-value=35 Score=30.78 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=28.2
Q ss_pred CceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|+|+++||-.. .|...+..+.+.+.+.+ .|.+++++...
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~ 42 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTT 42 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEee
Confidence 67899888554 44556777888888887 78887766544
No 135
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=54.00 E-value=24 Score=30.37 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=33.6
Q ss_pred CceEEEE-EeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 46 QLKIFII-FYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlII-y~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
.+||+.| +.|..+.-+...+.+.+.+++ .|++++.++..+. . .+.|.++|+|+++.
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~-lG~~v~~l~~~~d--------------------~-~~~l~~ad~I~v~G 87 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAP-LGIEVTGIHRVAD--------------------P-VAAIENAEAIFVGG 87 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHH-CCCEEEEeccchh--------------------h-HHHHhcCCEEEECC
Confidence 3566544 445444434444566666766 6777665554321 1 46789999999874
No 136
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=51.86 E-value=52 Score=26.64 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=43.5
Q ss_pred CceEEEEEeCCc-hhHHHHHHHHHHhccccCCc---eEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhh---hccCe
Q 040588 46 QLKIFIIFYSMY-GHVEILARRMKKGVDSIDGV---EGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDL---VHADG 118 (252)
Q Consensus 46 ~~kIlIIy~S~~-GnT~~la~~i~~~l~~~~G~---ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l---~~aD~ 118 (252)
..||+||..--+ --|+.|.+-..+.+.+ .|+ +++++.++-.. ++|.. .+.+ .+||+
T Consensus 10 ~~riaIV~srfn~~It~~Ll~gA~~~l~~-~G~~~~~i~v~~VPGA~---------------EiP~~-a~~l~~~~~yDa 72 (158)
T PRK12419 10 PQRIAFIQARWHADIVDQARKGFVAEIAA-RGGAASQVDIFDVPGAF---------------EIPLH-AQTLAKTGRYAA 72 (158)
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcHH---------------HHHHH-HHHHHhcCCCCE
Confidence 359999985544 4589999999999987 674 46777776541 11111 1222 35899
Q ss_pred EEEeccccCCCc
Q 040588 119 LLFGFPTRFGSM 130 (252)
Q Consensus 119 II~gsP~y~g~~ 130 (252)
||.-.-+.-|.-
T Consensus 73 iIaLG~VIrGeT 84 (158)
T PRK12419 73 IVAAALVVDGGI 84 (158)
T ss_pred EEEEEEEEcCCC
Confidence 887666655554
No 137
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=51.69 E-value=32 Score=23.63 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=26.9
Q ss_pred EEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 51 IIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 51 IIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
-+|++--++++.+...+.+.+++ .|.+++++++.+
T Consensus 4 ~~~a~~C~~C~~~~~~~~~~~~e-~~~~~~~~~v~~ 38 (76)
T TIGR00412 4 QIYGTGCANCQMTEKNVKKAVEE-LGIDAEFEKVTD 38 (76)
T ss_pred EEECCCCcCHHHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 34766678999888888777777 677888888874
No 138
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=51.47 E-value=51 Score=26.52 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=31.5
Q ss_pred CCceEEEEEeCCch-hHHHHHHHHHHhccccCC---ceEEEEECCCC
Q 040588 45 GQLKIFIIFYSMYG-HVEILARRMKKGVDSIDG---VEGVLYRVPET 87 (252)
Q Consensus 45 ~~~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G---~ev~l~~l~~~ 87 (252)
.+.||+||...-+- -|+.|.+...+.+++ .| .+++++.+.-.
T Consensus 11 ~~~riaIV~s~~n~~i~~~l~~ga~~~l~~-~gv~~~~i~v~~VPGa 56 (154)
T PRK00061 11 KGLRIGIVVARFNDFITDALLEGALDALKR-HGVSEENIDVVRVPGA 56 (154)
T ss_pred CCCEEEEEEecCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCCH
Confidence 34699999977554 488899999999987 67 45677777654
No 139
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=51.11 E-value=22 Score=31.94 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=30.3
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 47 LKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 47 ~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
||||+++-+. .|-.++++..+++.+.+ .|.+|+++...
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~-~G~~V~v~~~~ 39 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQS-RGHEVTIYTSH 39 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHh-CCCeEEEEcCC
Confidence 7899998774 46677788889999987 79999988653
No 140
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=50.86 E-value=27 Score=30.28 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=31.4
Q ss_pred ceEEEEEeC-------CchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 47 LKIFIIFYS-------MYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 47 ~kIlIIy~S-------~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
|||++|..+ ..|..++.+..+++.+.+ .|.+|.++.....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~-~g~~V~v~~~~~~ 47 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVA-RGHEVTLFASGDS 47 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHh-cCceEEEEecCCC
Confidence 699988754 357778888889999987 7999999876543
No 141
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=50.79 E-value=1.8e+02 Score=25.72 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=38.3
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|||.|| ++ |+ +...++..+.. .|.+|.+++-.... .+ .+.+.++|.||+..|.
T Consensus 5 m~I~ii-G~--G~---~G~~lA~~l~~-~G~~V~~~~r~~~~------------------~~-~~~~~~advvi~~vp~- 57 (308)
T PRK14619 5 KTIAIL-GA--GA---WGSTLAGLASA-NGHRVRVWSRRSGL------------------SL-AAVLADADVIVSAVSM- 57 (308)
T ss_pred CEEEEE-Cc--cH---HHHHHHHHHHH-CCCEEEEEeCCCCC------------------CH-HHHHhcCCEEEEECCh-
Confidence 577776 33 32 44455555554 67788877754321 11 3456789999999995
Q ss_pred CCCchHHHHHHHHhh
Q 040588 127 FGSMASQMKAFFDST 141 (252)
Q Consensus 127 ~g~~~~~~k~fld~l 141 (252)
..+..+++.+
T Consensus 58 -----~~~~~v~~~l 67 (308)
T PRK14619 58 -----KGVRPVAEQV 67 (308)
T ss_pred -----HHHHHHHHHH
Confidence 2455555554
No 142
>PRK08939 primosomal protein DnaI; Reviewed
Probab=50.75 E-value=16 Score=32.81 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=41.7
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 47 LKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 47 ~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
.+-+++||+. .|-|. |+.+|+..+.+ .|..+.++.+.+... .+.. ...+..+... ...+..+|.|||=
T Consensus 156 ~~gl~L~G~~G~GKTh-La~Aia~~l~~-~g~~v~~~~~~~l~~--~lk~---~~~~~~~~~~-l~~l~~~dlLiID 224 (306)
T PRK08939 156 VKGLYLYGDFGVGKSY-LLAAIANELAK-KGVSSTLLHFPEFIR--ELKN---SISDGSVKEK-IDAVKEAPVLMLD 224 (306)
T ss_pred CCeEEEECCCCCCHHH-HHHHHHHHHHH-cCCCEEEEEHHHHHH--HHHH---HHhcCcHHHH-HHHhcCCCEEEEe
Confidence 4678889875 79996 55677777766 788888888765310 0000 0011122232 5678899999964
No 143
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=50.39 E-value=57 Score=27.97 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=44.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcc-cchhhhhccCeEEEecc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPV-IAVDDLVHADGLLFGFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~-~~~~~l~~aD~II~gsP 124 (252)
.++|+++-+. .|. +.+.+.+.+ .|++++.+.+.+..|.. .+... .........|+|+|.||
T Consensus 123 ~~~vl~~~~~-~~r-----~~l~~~L~~-~G~~v~~~~~Y~~~~~~-----------~~~~~~~~~~~~~~~d~v~ftS~ 184 (248)
T COG1587 123 GKRVLILRGN-GGR-----EVLEEKLEE-RGAEVREVEVYRTEPPP-----------LDEATLIELLKLGEVDAVVFTSS 184 (248)
T ss_pred CCeEEEEcCC-Cch-----HHHHHHHHh-CCCEEEEEeeeeecCCC-----------ccHHHHHHHHHhCCCCEEEEeCH
Confidence 3577776643 333 566677777 78888888877653210 00000 01345678999999997
Q ss_pred ccCCCchHHHHHHHHhhhh
Q 040588 125 TRFGSMASQMKAFFDSTFH 143 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~l~~ 143 (252)
. .+++|++.+..
T Consensus 185 ~-------~v~~~~~~~~~ 196 (248)
T COG1587 185 S-------AVRALLALAPE 196 (248)
T ss_pred H-------HHHHHHHHccc
Confidence 5 57888877653
No 144
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=49.87 E-value=76 Score=26.70 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=32.0
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe-cc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG-FP 124 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g-sP 124 (252)
|+|+++.... .-|..+++.+ .+ .|++++++...... .+.. .+.+.++|+|||. .|
T Consensus 1 ~~ilv~d~~~-~~~~~~~~~l----~~-~G~~~~~~~~~~~~----------------~~~~-~~~~~~~dgliisGGp 56 (214)
T PRK07765 1 MRILVVDNYD-SFVFNLVQYL----GQ-LGVEAEVWRNDDPR----------------LADE-AAVAAQFDGVLLSPGP 56 (214)
T ss_pred CeEEEEECCC-cHHHHHHHHH----HH-cCCcEEEEECCCcC----------------HHHH-HHhhcCCCEEEECCCC
Confidence 5788888664 4444455544 33 57788887765311 1111 2235679999884 55
No 145
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=49.78 E-value=1.6e+02 Score=25.56 Aligned_cols=69 Identities=9% Similarity=0.069 Sum_probs=35.8
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
+.+.++|.||+..|.. ..++..+.....+ .....+|+. |...++. .......+.+.+...|+.++..+
T Consensus 54 e~~~~~d~vi~~vp~~-----~~~~~v~~~~~~~-~~~~~~g~i---iid~st~---~~~~~~~l~~~~~~~g~~~~d~p 121 (296)
T PRK11559 54 AVAEQCDVIITMLPNS-----PHVKEVALGENGI-IEGAKPGTV---VIDMSSI---APLASREIAAALKAKGIEMLDAP 121 (296)
T ss_pred HHHhcCCEEEEeCCCH-----HHHHHHHcCcchH-hhcCCCCcE---EEECCCC---CHHHHHHHHHHHHHcCCcEEEcC
Confidence 3457899999999973 3445444211000 001123343 3322221 12345567777777788777654
Q ss_pred c
Q 040588 191 Y 191 (252)
Q Consensus 191 ~ 191 (252)
.
T Consensus 122 v 122 (296)
T PRK11559 122 V 122 (296)
T ss_pred C
Confidence 3
No 146
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=49.75 E-value=99 Score=24.96 Aligned_cols=14 Identities=36% Similarity=0.245 Sum_probs=11.0
Q ss_pred hhhhccCeEEEecc
Q 040588 111 DDLVHADGLLFGFP 124 (252)
Q Consensus 111 ~~l~~aD~II~gsP 124 (252)
.++.++|+|||...
T Consensus 42 ~~~~~~dgvil~Gg 55 (188)
T cd01741 42 PDLDDYDGLVILGG 55 (188)
T ss_pred CCcccCCEEEECCC
Confidence 45788999999754
No 147
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=49.69 E-value=1.8e+02 Score=25.83 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=40.5
Q ss_pred hhhhhc---cCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEE
Q 040588 110 VDDLVH---ADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVY 186 (252)
Q Consensus 110 ~~~l~~---aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~v 186 (252)
..++.+ -|..|+..|- ..+...++.+.. +|-+.+++.+.|.. +...+.+.+....+|+.+
T Consensus 55 v~dlp~~~~~Dlavi~vpa------~~v~~~l~e~~~-------~Gvk~avIis~Gf~----e~~~~~l~~~a~~~giri 117 (286)
T TIGR01019 55 VKEAVEETGANASVIFVPA------PFAADAIFEAID-------AGIELIVCITEGIP----VHDMLKVKRYMEESGTRL 117 (286)
T ss_pred HHHHhhccCCCEEEEecCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEE
Confidence 445554 5999999983 334444444431 45556666665542 223356788888999999
Q ss_pred ecCC
Q 040588 187 VPIG 190 (252)
Q Consensus 187 v~~~ 190 (252)
+|+.
T Consensus 118 lGPN 121 (286)
T TIGR01019 118 IGPN 121 (286)
T ss_pred ECCC
Confidence 9873
No 148
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=48.36 E-value=64 Score=29.15 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=46.6
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc-c
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT-R 126 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~-y 126 (252)
.++||. +|++-..|..+++.|++ .|+++++++++...|. |...+ .+.+.+...||+.=-- .
T Consensus 203 ditiia---~G~~v~~al~Aa~~L~~-~Gi~~~VId~~~ikPl-------------D~~~i-~~~~~~t~~vv~vEE~~~ 264 (327)
T CHL00144 203 DITILT---YSRMRHHVLQAVKVLVE-KGYDPEIIDLISLKPL-------------DLGTI-SKSVKKTHKVLIVEECMK 264 (327)
T ss_pred CEEEEE---ccHHHHHHHHHHHHHHh-cCCCEEEEecCcCCCC-------------CHHHH-HHHHHhhCcEEEEECCCC
Confidence 566665 56666677777777777 7999999999876442 11111 3445566666655333 2
Q ss_pred CCCchHHHHHHHHh
Q 040588 127 FGSMASQMKAFFDS 140 (252)
Q Consensus 127 ~g~~~~~~k~fld~ 140 (252)
.|++-+.+..++-.
T Consensus 265 ~gGlG~~va~~l~e 278 (327)
T CHL00144 265 TGGIGAELIAQINE 278 (327)
T ss_pred CCCHHHHHHHHHHH
Confidence 56676666666643
No 149
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=47.71 E-value=1e+02 Score=26.84 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=11.3
Q ss_pred hhhhhccCeEEEec
Q 040588 110 VDDLVHADGLLFGF 123 (252)
Q Consensus 110 ~~~l~~aD~II~gs 123 (252)
.+++.++|+|||..
T Consensus 33 ~~~L~~~DgLILPG 46 (248)
T PLN02832 33 PEQLEGVSGLIIPG 46 (248)
T ss_pred HHHhccCCEEEeCC
Confidence 35677899999986
No 150
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=47.69 E-value=35 Score=29.94 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=29.3
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
.++|.++|.+...++....+.+.+.+++ .|+++..+.+.+.
T Consensus 131 ~k~igvl~~~~~~~~~~~~~~~~~~a~~-~g~~l~~~~v~~~ 171 (294)
T PF04392_consen 131 AKRIGVLYDPSEPNSVAQIEQLRKAAKK-LGIELVEIPVPSS 171 (294)
T ss_dssp --EEEEEEETT-HHHHHHHHHHHHHHHH-TT-EEEEEEESSG
T ss_pred CCEEEEEecCCCccHHHHHHHHHHHHHH-cCCEEEEEecCcH
Confidence 3678899988777778888888888877 7888877777653
No 151
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=45.06 E-value=89 Score=28.63 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=46.8
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc-
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR- 126 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y- 126 (252)
.++||. +|++-..|..+++.+++ .|+++++++++...|. |...+ .+.+.+++.||+.-=-+
T Consensus 230 dvtIia---~G~~v~~Al~Aa~~L~~-~GI~v~VId~~~ikPl-------------D~~~l-~~~~~~t~~vvtvEE~~~ 291 (356)
T PLN02683 230 DVTIVA---FSKMVGYALKAAEILAK-EGISAEVINLRSIRPL-------------DRDTI-NASVRKTNRLVTVEEGWP 291 (356)
T ss_pred CEEEEE---ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCcc-------------CHHHH-HHHHhhcCeEEEEeCCCc
Confidence 676665 56666677777777777 7999999999876442 11111 34455666666553322
Q ss_pred CCCchHHHHHHHHh
Q 040588 127 FGSMASQMKAFFDS 140 (252)
Q Consensus 127 ~g~~~~~~k~fld~ 140 (252)
.|++-+.+..++-.
T Consensus 292 ~GGlGs~Va~~l~e 305 (356)
T PLN02683 292 QHGVGAEICASVVE 305 (356)
T ss_pred CCCHHHHHHHHHHH
Confidence 46676666666644
No 152
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=44.68 E-value=67 Score=28.69 Aligned_cols=59 Identities=24% Similarity=0.266 Sum_probs=36.3
Q ss_pred ceEEEEEeCCch-hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE-ecc
Q 040588 47 LKIFIIFYSMYG-HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF-GFP 124 (252)
Q Consensus 47 ~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~-gsP 124 (252)
+++.||.+|..| +...+++.+.+.+++ +|-++-++.+.+..|. ....+.+.|++|+ +.|
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~-~gkk~y~~~~~~i~~~------------------kL~nf~eid~fV~~aCP 270 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKK-AGKKSYTLSVGEINPA------------------KLANFPEIDAFVQIACP 270 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHH-TT-EEEEEEESS--GG------------------GGTTS---SEEEE-S-T
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHH-cCCEEEEEEECCCCHH------------------HHhcCcccCEEEEecCC
Confidence 578899998755 456789999999998 8999989988876331 1345556777765 455
No 153
>PLN02335 anthranilate synthase
Probab=44.64 E-value=96 Score=26.25 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=25.0
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 43 TTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
..+..+||||- -..+.|..+++.+.+ .|++++++...
T Consensus 15 ~~~~~~ilviD-~~dsft~~i~~~L~~-----~g~~~~v~~~~ 51 (222)
T PLN02335 15 SKQNGPIIVID-NYDSFTYNLCQYMGE-----LGCHFEVYRND 51 (222)
T ss_pred cCccCcEEEEE-CCCCHHHHHHHHHHH-----CCCcEEEEECC
Confidence 34456899884 345677777777755 46778888653
No 154
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=44.51 E-value=1.2e+02 Score=22.86 Aligned_cols=39 Identities=13% Similarity=-0.059 Sum_probs=21.0
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCC
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGT 163 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~ 163 (252)
+.+.++|.||--| .|..+...++.+. +.++-.+++|.|+
T Consensus 63 ~~~~~~DVvIDfT------~p~~~~~~~~~~~--------~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 63 ELLEEADVVIDFT------NPDAVYDNLEYAL--------KHGVPLVIGTTGF 101 (124)
T ss_dssp HHTTH-SEEEEES-------HHHHHHHHHHHH--------HHT-EEEEE-SSS
T ss_pred HhcccCCEEEEcC------ChHHhHHHHHHHH--------hCCCCEEEECCCC
Confidence 3456699887665 4566666666643 2234456777666
No 155
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=43.79 E-value=2e+02 Score=25.03 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=54.7
Q ss_pred HHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCCCchHHHHHHH---H
Q 040588 63 LARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFF---D 139 (252)
Q Consensus 63 la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fl---d 139 (252)
|...++..+.+ .|.++.+++...... ..+....+.. .+ .. .+.+.++|.||+..|.. ..+...+ +
T Consensus 7 mG~~mA~~L~~-~G~~V~v~dr~~~~~-~~l~~~g~~~-~~---s~-~~~~~~advVil~vp~~-----~~~~~v~~g~~ 74 (288)
T TIGR01692 7 MGGPMAANLLK-AGHPVRVFDLFPDAV-EEAVAAGAQA-AA---SP-AEAAEGADRVITMLPAG-----QHVISVYSGDE 74 (288)
T ss_pred hHHHHHHHHHh-CCCeEEEEeCCHHHH-HHHHHcCCee-cC---CH-HHHHhcCCEEEEeCCCh-----HHHHHHHcCcc
Confidence 45556666655 677777776543210 0111111111 01 11 34567899999999973 2344444 2
Q ss_pred hhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCc
Q 040588 140 STFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGY 191 (252)
Q Consensus 140 ~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~ 191 (252)
.+.. ...+|+.+ ...++. . ..+.+.+.+.+..+|..+++.+.
T Consensus 75 ~l~~----~~~~g~~v---id~st~--~-p~~~~~~~~~~~~~g~~~vdaPv 116 (288)
T TIGR01692 75 GILP----KVAKGSLL---IDCSTI--D-PDSARKLAELAAAHGAVFMDAPV 116 (288)
T ss_pred hHhh----cCCCCCEE---EECCCC--C-HHHHHHHHHHHHHcCCcEEECCC
Confidence 2221 11234432 222221 2 23566777888888998887654
No 156
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=43.79 E-value=1.4e+02 Score=22.69 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=46.9
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhh--hhccCeEEEecc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDD--LVHADGLLFGFP 124 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~--l~~aD~II~gsP 124 (252)
+||.|+-+. |....-+-.+.+.++. .|.+++++..... +. .. .+... -.++...++ ..++|+||+...
T Consensus 2 ~~v~ill~~--g~~~~e~~~~~~~~~~-a~~~v~vvs~~~~-~v--~s--~~g~~--i~~~~~l~~~~~~~~D~liVpGg 71 (142)
T cd03132 2 RKVGILVAD--GVDAAELSALKAALKA-AGANVKVVAPTLG-GV--VD--SDGKT--LEVDQTYAGAPSVLFDAVVVPGG 71 (142)
T ss_pred CEEEEEEcC--CcCHHHHHHHHHHHHH-CCCEEEEEecCcC-ce--ec--CCCcE--EecceeecCCChhhcCEEEECCC
Confidence 467766644 3333334455566665 6788888876532 10 00 00000 000001222 236899888753
Q ss_pred ccCC---CchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 125 TRFG---SMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 125 ~y~g---~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
.... ...+.+..|+.+.. -++|+++.+++
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~-------~~~~~I~aic~ 103 (142)
T cd03132 72 AEAAFALAPSGRALHFVTEAF-------KHGKPIGAVGE 103 (142)
T ss_pred ccCHHHHccChHHHHHHHHHH-------hcCCeEEEcCc
Confidence 2211 22345666666543 26787776664
No 157
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=43.73 E-value=56 Score=25.76 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=29.6
Q ss_pred ceEEEEEeCCc-hhHHHHHHHHHHhccccCCce---EEEEECCCC
Q 040588 47 LKIFIIFYSMY-GHVEILARRMKKGVDSIDGVE---GVLYRVPET 87 (252)
Q Consensus 47 ~kIlIIy~S~~-GnT~~la~~i~~~l~~~~G~e---v~l~~l~~~ 87 (252)
+||+||...-+ --|+.|.+...+.+++ .|++ ++++.++-.
T Consensus 1 ~ri~IV~s~~n~~i~~~L~~ga~~~l~~-~g~~~~~i~v~~VPGa 44 (138)
T TIGR00114 1 VRVGIVIARFNRDITDMLLKGAIDALKR-LGAEVDNIDVIWVPGA 44 (138)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcH
Confidence 47889886654 4588999999888887 6765 457777654
No 158
>PF13730 HTH_36: Helix-turn-helix domain
Probab=43.68 E-value=8.9 Score=24.53 Aligned_cols=16 Identities=56% Similarity=1.200 Sum_probs=11.2
Q ss_pred CCCCCCcCccccccCC
Q 040588 3 KGGGCFPSKKKFAIDM 18 (252)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (252)
+.++||||.+..|-++
T Consensus 20 ~~~~~~pS~~~la~~~ 35 (55)
T PF13730_consen 20 KNGGCFPSQETLAKDL 35 (55)
T ss_pred CCCCCCcCHHHHHHHH
Confidence 4455999988777554
No 159
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=43.62 E-value=85 Score=28.76 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=42.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe-ccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG-FPT 125 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g-sP~ 125 (252)
.+++||. +|++...+..+++.+++ .|++++++++....|. |...+ .+.+..++.||+. --.
T Consensus 234 ~di~Iia---~Gs~~~~aleAa~~L~~-~Gi~v~vI~~~~l~Pl-------------d~e~i-~~~~~~~~~IvvvEE~~ 295 (355)
T PTZ00182 234 KDVTIVG---YGSQVHVALKAAEELAK-EGISCEVIDLRSLRPW-------------DRETI-VKSVKKTGRCVIVHEAP 295 (355)
T ss_pred CCEEEEE---eCHHHHHHHHHHHHHHh-CCCcEEEEEEeeCCCC-------------CHHHH-HHHHhcCCEEEEEEeCC
Confidence 3566655 45555556566666666 6889999999876441 00111 3445566665554 223
Q ss_pred cCCCchHHHHHHHH
Q 040588 126 RFGSMASQMKAFFD 139 (252)
Q Consensus 126 y~g~~~~~~k~fld 139 (252)
..|++...+..++-
T Consensus 296 ~~GGlG~~Va~~l~ 309 (355)
T PTZ00182 296 PTCGIGAEIAAQIM 309 (355)
T ss_pred CCCCHHHHHHHHHH
Confidence 34666666665553
No 160
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=42.96 E-value=56 Score=28.29 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=33.5
Q ss_pred eEEEeccccC--CCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCc
Q 040588 118 GLLFGFPTRF--GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGM 184 (252)
Q Consensus 118 ~II~gsP~y~--g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~ 184 (252)
+||+|+..|. +.++..++.=|+.-..++. .||...++.|+|....+. .-...|.+.|..+|.
T Consensus 48 ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk----~gk~~~ilvSGg~~~~~~-~Ea~~M~~yLi~~GV 111 (239)
T PRK10834 48 GVVLGTAKYYRTGVINQYYRYRIQGAINAYN----SGKVNYLLLSGDNALQSY-NEPMTMRKDLIAAGV 111 (239)
T ss_pred EEEcCCcccCCCCCcCHHHHHHHHHHHHHHH----hCCCCEEEEeCCCCCCCC-CHHHHHHHHHHHcCC
Confidence 5678887763 5566666665655443322 455555667766432111 123346666666554
No 161
>PRK08727 hypothetical protein; Validated
Probab=42.76 E-value=1.1e+02 Score=25.89 Aligned_cols=58 Identities=9% Similarity=0.073 Sum_probs=37.2
Q ss_pred eEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 48 KIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 48 kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
+.+++||.. +|.|. ++.++...+.+ .|..+..+.+.+... .+... .+.+..+|.||+=
T Consensus 42 ~~l~l~G~~G~GKTh-L~~a~~~~~~~-~~~~~~y~~~~~~~~--------------~~~~~-~~~l~~~dlLiID 100 (233)
T PRK08727 42 DWLYLSGPAGTGKTH-LALALCAAAEQ-AGRSSAYLPLQAAAG--------------RLRDA-LEALEGRSLVALD 100 (233)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHH-cCCcEEEEeHHHhhh--------------hHHHH-HHHHhcCCEEEEe
Confidence 457888764 89986 66677777766 677777777654311 01112 4566778888875
No 162
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=42.38 E-value=1.4e+02 Score=24.49 Aligned_cols=47 Identities=26% Similarity=0.245 Sum_probs=29.3
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|+|+-++..||...+... ++. .|+++++++..+ ++.++|+|||+...
T Consensus 1 ~~~~~y~~~gN~~~l~~~----~~~-~G~~~~~~~~~~-------------------------~~~~~d~lilpGg~ 47 (194)
T cd01750 1 IAVIRYPDISNFTDLDPL----ARE-PGVDVRYVEVPE-------------------------GLGDADLIILPGSK 47 (194)
T ss_pred CEeecCCCccCHHHHHHH----Hhc-CCceEEEEeCCC-------------------------CCCCCCEEEECCCc
Confidence 345555667887544333 333 577887777542 24578999987654
No 163
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=42.35 E-value=2.4e+02 Score=24.82 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=35.1
Q ss_pred cCeEEEeccccCCCchHHHHHHHHhhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCcc
Q 040588 116 ADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYT 192 (252)
Q Consensus 116 aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~ 192 (252)
+|.||+..|.. ..++..++.+.. .+ +|+.+ +-++... . .....+.+.+...|..+++.+..
T Consensus 60 advVi~~vp~~-----~~~~~v~~~i~~-----~l~~g~iv-id~st~~----~-~~~~~~~~~~~~~g~~~vdapV~ 121 (299)
T PRK12490 60 PRTIWVMVPAG-----EVTESVIKDLYP-----LLSPGDIV-VDGGNSR----Y-KDDLRRAEELAERGIHYVDCGTS 121 (299)
T ss_pred CCEEEEEecCc-----hHHHHHHHHHhc-----cCCCCCEE-EECCCCC----c-hhHHHHHHHHHHcCCeEEeCCCC
Confidence 69999999964 345555554432 23 34432 2222221 1 23556777788889888876543
No 164
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=42.25 E-value=1.6e+02 Score=22.88 Aligned_cols=78 Identities=8% Similarity=0.146 Sum_probs=41.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHH-HhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMK-KGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~-~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
++..|+.++..|....+...+. ..++. .|. +++++....|.+ ++ .+.+.+.+.=+++-..
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~--eVi~LG~~vp~e---------------~i-~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTE-AGF--EVINLGVMTSQE---------------EF-IDAAIETDADAILVSS 62 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHH-CCC--EEEECCCCCCHH---------------HH-HHHHHHcCCCEEEEcC
Confidence 3444555665544444443333 33444 674 567777554422 12 3444444444444444
Q ss_pred cCCCchHHHHHHHHhhhh
Q 040588 126 RFGSMASQMKAFFDSTFH 143 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~ 143 (252)
..+..-..++.+++.+..
T Consensus 63 ~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 63 LYGHGEIDCRGLREKCIE 80 (137)
T ss_pred ccccCHHHHHHHHHHHHh
Confidence 455666778889988764
No 165
>PRK06455 riboflavin synthase; Provisional
Probab=41.84 E-value=49 Score=26.71 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=25.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCC--ceEEEEECCCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDG--VEGVLYRVPET 87 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G--~ev~l~~l~~~ 87 (252)
|+||.||...-+- ..|.+...+.+++ .| +.++++.+.-.
T Consensus 1 ~~kigIV~s~fn~--~~L~~gAi~~L~~-~g~~~~I~v~~VPGa 41 (155)
T PRK06455 1 MMKIGIADTTFAR--VDMGSAAIDELRK-LDPSAKIIRYTVPGI 41 (155)
T ss_pred CcEEEEEEEecch--HHHHHHHHHHHHh-cCCCCceEEEECCCH
Confidence 6889998854332 3567777777765 34 56777777653
No 166
>PRK06545 prephenate dehydrogenase; Validated
Probab=41.82 E-value=2.7e+02 Score=25.27 Aligned_cols=72 Identities=8% Similarity=0.129 Sum_probs=37.9
Q ss_pred HHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCCCchHHHHHHHHhh
Q 040588 62 ILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDST 141 (252)
Q Consensus 62 ~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l 141 (252)
.|...++..+.+ .|.++.++..... .........+...+...... .+.+.++|.||++.|.. .+..++..+
T Consensus 10 liG~siA~~L~~-~G~~v~i~~~~~~-~~~~~~a~~~~~~~~~~~~~-~~~~~~aDlVilavP~~------~~~~vl~~l 80 (359)
T PRK06545 10 LIGGSLALAIKA-AGPDVFIIGYDPS-AAQLARALGFGVIDELAADL-QRAAAEADLIVLAVPVD------ATAALLAEL 80 (359)
T ss_pred HHHHHHHHHHHh-cCCCeEEEEeCCC-HHHHHHHhcCCCCcccccCH-HHHhcCCCEEEEeCCHH------HHHHHHHHH
Confidence 355666666666 6777888776542 11111111111111111111 23467899999999985 345555554
Q ss_pred h
Q 040588 142 F 142 (252)
Q Consensus 142 ~ 142 (252)
.
T Consensus 81 ~ 81 (359)
T PRK06545 81 A 81 (359)
T ss_pred h
Confidence 3
No 167
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=41.78 E-value=73 Score=26.33 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=28.5
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
|+||-+. .||...+++.+.+ .|++++++. + ..++.++|+||+..+
T Consensus 2 i~~~d~~-~~~~~~i~~~l~~-----~G~~v~~~~--~-----------------------~~~l~~~d~iiipG~ 46 (205)
T PRK13141 2 IAIIDYG-MGNLRSVEKALER-----LGAEAVITS--D-----------------------PEEILAADGVILPGV 46 (205)
T ss_pred EEEEEcC-CchHHHHHHHHHH-----CCCeEEEEC--C-----------------------HHHhccCCEEEECCC
Confidence 5555443 6777666666554 467777742 1 345678999999764
No 168
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=41.50 E-value=36 Score=30.31 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=27.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
||||+|+-....|... .+-.+++.+.+ .|.++.++-...
T Consensus 1 ~~~i~i~~~g~gG~~~-~~~~la~~L~~-~g~ev~vv~~~~ 39 (357)
T PRK00726 1 MKKILLAGGGTGGHVF-PALALAEELKK-RGWEVLYLGTAR 39 (357)
T ss_pred CcEEEEEcCcchHhhh-HHHHHHHHHHh-CCCEEEEEECCC
Confidence 6898887655567765 55677777777 788988876543
No 169
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=41.39 E-value=1.3e+02 Score=22.68 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=43.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCH-HHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPA-EVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~-~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
.+.++|.......+...++...+.+++ .|++++++.+.+.... +.... +. ....=.+-++|++-.|.
T Consensus 30 P~Laii~vg~d~~S~~Y~~~k~k~~~~-~Gi~~~~~~l~~~~~~~el~~~---------i~--~lN~D~~V~GIlvq~PL 97 (117)
T PF00763_consen 30 PKLAIILVGDDPASISYVRSKQKAAEK-LGIEFELIELPEDISEEELLEL---------IE--KLNEDPSVHGILVQLPL 97 (117)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHH-HT-EEEEEEE-TTSSHHHHHHH---------HH--HHHH-TT-SEEEEESSS
T ss_pred cEEEEEecCCChhHHHHHHHHHHHHHH-cCCceEEEECCCCcCHHHHHHH---------HH--HHhCCCCCCEEEEcCCC
Confidence 467788877777778888899898888 8999999999765322 11100 00 01222456999999999
Q ss_pred cCCC
Q 040588 126 RFGS 129 (252)
Q Consensus 126 y~g~ 129 (252)
..+-
T Consensus 98 P~~i 101 (117)
T PF00763_consen 98 PKHI 101 (117)
T ss_dssp STTS
T ss_pred CCCc
Confidence 6443
No 170
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=41.27 E-value=1.9e+02 Score=23.27 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=37.7
Q ss_pred CCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe-ccccCCCchHH
Q 040588 55 SMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG-FPTRFGSMASQ 133 (252)
Q Consensus 55 S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g-sP~y~g~~~~~ 133 (252)
...++|..+.+++.+ .|++++++.+.... ... .+++.++|+||+. +|-.... ...
T Consensus 5 ~~~~~~~~l~~~l~~-----~~~~~~v~~~~~~~-----------------~~~-~~~~~~~d~iii~Gg~~~~~d-~~~ 60 (192)
T PF00117_consen 5 NGDSFTHSLVRALRE-----LGIDVEVVRVDSDF-----------------EEP-LEDLDDYDGIIISGGPGSPYD-IEG 60 (192)
T ss_dssp SSHTTHHHHHHHHHH-----TTEEEEEEETTGGH-----------------HHH-HHHTTTSSEEEEECESSSTTS-HHH
T ss_pred CCHHHHHHHHHHHHH-----CCCeEEEEECCCch-----------------hhh-hhhhcCCCEEEECCcCCcccc-ccc
Confidence 344567766665544 56789999987420 000 1257889998775 5554444 455
Q ss_pred HHHHHHhhh
Q 040588 134 MKAFFDSTF 142 (252)
Q Consensus 134 ~k~fld~l~ 142 (252)
.+.+++.+.
T Consensus 61 ~~~~i~~~~ 69 (192)
T PF00117_consen 61 LIELIREAR 69 (192)
T ss_dssp HHHHHHHHH
T ss_pred ccccccccc
Confidence 566666543
No 171
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=41.23 E-value=1.2e+02 Score=29.51 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=32.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
+.+|+||-+. .||...+++++.+ .|+++.+++ + ..++.++|+|||..
T Consensus 6 ~~~i~iiDyG-~GN~~sl~~al~~-----~G~~v~~v~--~-----------------------~~~l~~~D~lIlpG 52 (538)
T PLN02617 6 DSEVTLLDYG-AGNVRSVRNAIRH-----LGFTIKDVQ--T-----------------------PEDILNADRLIFPG 52 (538)
T ss_pred CCeEEEEECC-CCCHHHHHHHHHH-----CCCeEEEEC--C-----------------------hhhhccCCEEEECC
Confidence 4578877754 6888888877764 466665443 1 23567899999976
No 172
>PRK13566 anthranilate synthase; Provisional
Probab=41.15 E-value=2.2e+02 Score=28.85 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=24.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.+||+||-+- .+++..+++.+.+ .|++++++....
T Consensus 526 g~~IlvID~~-dsf~~~l~~~Lr~-----~G~~v~vv~~~~ 560 (720)
T PRK13566 526 GKRVLLVDHE-DSFVHTLANYFRQ-----TGAEVTTVRYGF 560 (720)
T ss_pred CCEEEEEECC-CchHHHHHHHHHH-----CCCEEEEEECCC
Confidence 3589888765 4667766666644 577888888754
No 173
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=40.85 E-value=1.7e+02 Score=24.18 Aligned_cols=69 Identities=22% Similarity=0.321 Sum_probs=40.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
..||++|=... +..+...+.+.+.+++ .|+++..+.+.+.. +-+++ .+.+.++|+|+|+.
T Consensus 29 ~~~i~~iptA~-~~~~~~~~~~~~~~~~-lG~~~~~~~~~~~~---------------~~~~~-~~~l~~ad~I~~~G-- 88 (210)
T cd03129 29 GARVLFIPTAS-GDRDEYGEEYRAAFER-LGVEVVHLLLIDTA---------------NDPDV-VARLLEADGIFVGG-- 88 (210)
T ss_pred CCeEEEEeCCC-CChHHHHHHHHHHHHH-cCCceEEEeccCCC---------------CCHHH-HHHHhhCCEEEEcC--
Confidence 45777764332 2244455666666766 67776655544310 11222 67899999999985
Q ss_pred cCCCchHHHHH
Q 040588 126 RFGSMASQMKA 136 (252)
Q Consensus 126 y~g~~~~~~k~ 136 (252)
|+.+-.++.
T Consensus 89 --G~~~~~~~~ 97 (210)
T cd03129 89 --GNQLRLLSV 97 (210)
T ss_pred --CcHHHHHHH
Confidence 554444444
No 174
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=40.77 E-value=94 Score=23.29 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=53.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
+||||+. .| -+|-.+.+.+++ .|+++-.++-.+.. .......+|.+++-.|.-
T Consensus 3 kkvLIan---rG---eia~r~~ra~r~-~Gi~tv~v~s~~d~--------------------~s~~~~~ad~~~~~~~~~ 55 (110)
T PF00289_consen 3 KKVLIAN---RG---EIAVRIIRALRE-LGIETVAVNSNPDT--------------------VSTHVDMADEAYFEPPGP 55 (110)
T ss_dssp SEEEESS----H---HHHHHHHHHHHH-TTSEEEEEEEGGGT--------------------TGHHHHHSSEEEEEESSS
T ss_pred CEEEEEC---CC---HHHHHHHHHHHH-hCCcceeccCchhc--------------------ccccccccccceecCcch
Confidence 5777765 22 236677777777 78887777654310 134567788887665333
Q ss_pred CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 040588 127 FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 127 ~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
...-.-.+...++-... . . +..+.++.+.-.+ -..+.+.+...|+.++|.
T Consensus 56 ~~~~yl~~e~I~~ia~~-------~-g---~~~i~pGyg~lse--~~~fa~~~~~~gi~fiGp 105 (110)
T PF00289_consen 56 SPESYLNIEAIIDIARK-------E-G---ADAIHPGYGFLSE--NAEFAEACEDAGIIFIGP 105 (110)
T ss_dssp GGGTTTSHHHHHHHHHH-------T-T---ESEEESTSSTTTT--HHHHHHHHHHTT-EESSS
T ss_pred hhhhhccHHHHhhHhhh-------h-c---CcccccccchhHH--HHHHHHHHHHCCCEEECc
Confidence 21111112333333221 1 2 2333333222233 346777777899999875
No 175
>PRK00861 putative lipid kinase; Reviewed
Probab=40.57 E-value=72 Score=28.06 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=24.7
Q ss_pred CceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+|+++|+-.. .|...+..+.+...+++ +.+++++....
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~--~~~~~~~~t~~ 42 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEP--EMDLDIYLTTP 42 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHh--cCceEEEEccC
Confidence 67888888544 45555666777777764 35666665443
No 176
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=40.57 E-value=30 Score=25.42 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=31.9
Q ss_pred ccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEE
Q 040588 115 HADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVY 186 (252)
Q Consensus 115 ~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~v 186 (252)
+.|+++.- ...+-+....+|+++.. .||++.+++..+.. +..++.+.|..+|+.+
T Consensus 4 D~dGvl~~----g~~~ipga~e~l~~L~~-------~g~~~~~lTNns~~------s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 4 DLDGVLYN----GNEPIPGAVEALDALRE-------RGKPVVFLTNNSSR------SREEYAKKLKKLGIPV 58 (101)
T ss_dssp ESTTTSEE----TTEE-TTHHHHHHHHHH-------TTSEEEEEES-SSS-------HHHHHHHHHHTTTT-
T ss_pred eCccEeEe----CCCcCcCHHHHHHHHHH-------cCCCEEEEeCCCCC------CHHHHHHHHHhcCcCC
Confidence 44555543 22233345788888753 68888877765432 2345667777888765
No 177
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=40.55 E-value=46 Score=25.88 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=37.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccC-CceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe-cc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSID-GVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG-FP 124 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~-G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g-sP 124 (252)
.||+|+|..-+-.=...+.++++-|++ . |++|.+ +.-+.... ...+-.... ...+.++|.||+. ||
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~-~~g~~V~l-D~~~~~~i---------~~~g~~~W~-~~~~~~ad~Vliv~S~ 68 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQ-NCGIDVIL-DQWELNEI---------ARQGPPRWM-ERQIREADKVLIVCSP 68 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHh-ccCCceee-cHHhhccc---------ccCCHHHHH-HHHHhcCCEEEEEecc
Confidence 479999966433334677788888887 5 887652 32221000 000111122 4568889988665 55
Q ss_pred cc
Q 040588 125 TR 126 (252)
Q Consensus 125 ~y 126 (252)
.+
T Consensus 69 ~~ 70 (150)
T PF08357_consen 69 GY 70 (150)
T ss_pred ch
Confidence 54
No 178
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=40.38 E-value=68 Score=30.02 Aligned_cols=52 Identities=15% Similarity=0.048 Sum_probs=34.5
Q ss_pred cccccCCCCCCCCceEEEEEe-CC---chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 34 DQNQLTTTSTTGQLKIFIIFY-SM---YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 34 ~~~~~~~~~~~~~~kIlIIy~-S~---~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+-.++++.+....|||+++.. ++ .|-++.....+++.+.+ .|.++.++-...
T Consensus 46 ~~~~~~~~~~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~-~G~eV~vlt~~~ 101 (465)
T PLN02871 46 PPPLLDTDSRSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLRE-MGDEVLVVTTDE 101 (465)
T ss_pred CcccccccccCCCceEEEEECCcCCcccccHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 334555666567789998754 32 24444555677788887 799999887544
No 179
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=40.37 E-value=26 Score=30.48 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=41.8
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCc-ccchhhhhccCeEEEec
Q 040588 47 LKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVP-VIAVDDLVHADGLLFGF 123 (252)
Q Consensus 47 ~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~-~~~~~~l~~aD~II~gs 123 (252)
.+=+++||.+ .|.|. ||-+|+..+.. .|..|.++.+.+.... +. ....+.... .+ ...+..+|.+||-=
T Consensus 105 ~~nl~l~G~~G~GKTh-La~Ai~~~l~~-~g~sv~f~~~~el~~~--Lk---~~~~~~~~~~~l-~~~l~~~dlLIiDD 175 (254)
T COG1484 105 GENLVLLGPPGVGKTH-LAIAIGNELLK-AGISVLFITAPDLLSK--LK---AAFDEGRLEEKL-LRELKKVDLLIIDD 175 (254)
T ss_pred CCcEEEECCCCCcHHH-HHHHHHHHHHH-cCCeEEEEEHHHHHHH--HH---HHHhcCchHHHH-HHHhhcCCEEEEec
Confidence 3567888876 79986 56677766666 7999999998775210 00 000000011 11 34589999999853
No 180
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=40.17 E-value=90 Score=21.63 Aligned_cols=40 Identities=8% Similarity=-0.109 Sum_probs=24.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+|.|.+.+.-+.++++.+.+.+-..+..+++.+.+++.+
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~ 40 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA 40 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCC
Confidence 4566655555677776666655543322367788888864
No 181
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=40.00 E-value=1.3e+02 Score=25.70 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=27.3
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEE
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFV 159 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~ 159 (252)
...+..||.|||-||. .++.|++++...... .++++++++++
T Consensus 45 l~~l~~~d~vvfTS~~-------av~~~~~~l~~~~~~-~~~~~~i~aVG 86 (248)
T COG1587 45 LEDLDSADWVVFTSPN-------AVRFFFEALKEQGLD-ALKNKKIAAVG 86 (248)
T ss_pred HhccccCCEEEEECHH-------HHHHHHHHHHhhccc-ccccCeEEEEc
Confidence 4566669999999985 567777776542211 34566666554
No 182
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=39.42 E-value=45 Score=25.13 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=27.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
.+++||. +|++-..|..+++.+++ .|+++++++++-..
T Consensus 10 ~di~iia---~G~~~~~al~A~~~L~~-~Gi~~~vi~~~~i~ 47 (124)
T PF02780_consen 10 ADITIIA---YGSMVEEALEAAEELEE-EGIKAGVIDLRTIK 47 (124)
T ss_dssp SSEEEEE---ETTHHHHHHHHHHHHHH-TTCEEEEEEEEEEE
T ss_pred CCEEEEe---ehHHHHHHHHHHHHHHH-cCCceeEEeeEEEe
Confidence 3566665 55666667777777777 79999999987653
No 183
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=39.29 E-value=46 Score=26.57 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=42.7
Q ss_pred CceEEEEEeCC-----------chhH--HHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhh
Q 040588 46 QLKIFIIFYSM-----------YGHV--EILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDD 112 (252)
Q Consensus 46 ~~kIlIIy~S~-----------~GnT--~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~ 112 (252)
||||+||.+-. ||++ +.+-+.+.+.+++ .|++++++.-... .+.. ..+ .+.
T Consensus 1 ~~~ilvlNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~-~g~~v~~~QSN~E--GelI------------d~I-~~a 64 (146)
T PRK05395 1 MMKILVLNGPNLNLLGTREPEIYGSTTLADIEALLEEEAAE-LGVELEFFQSNHE--GELI------------DRI-HEA 64 (146)
T ss_pred CCEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEeeCcH--HHHH------------HHH-Hhc
Confidence 57788887651 4543 4455666666666 7888888775432 0000 001 223
Q ss_pred hhccCeEEEeccccCCCchHHHHHHHHhh
Q 040588 113 LVHADGLLFGFPTRFGSMASQMKAFFDST 141 (252)
Q Consensus 113 l~~aD~II~gsP~y~g~~~~~~k~fld~l 141 (252)
..++|+|||=---|- ..+-.+...+..+
T Consensus 65 ~~~~dgiiINpga~T-HtSiAl~DAl~~~ 92 (146)
T PRK05395 65 RDGADGIIINPGAYT-HTSVALRDALAAV 92 (146)
T ss_pred ccCCcEEEECchHHH-HHHHHHHHHHHcC
Confidence 346788888655542 1233355555443
No 184
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=39.18 E-value=25 Score=27.89 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=44.0
Q ss_pred ceEEEEEeCC-----------chhH--HHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhh
Q 040588 47 LKIFIIFYSM-----------YGHV--EILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDL 113 (252)
Q Consensus 47 ~kIlIIy~S~-----------~GnT--~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l 113 (252)
|||+||.+-. +|++ +.+-+.+.+...+ .|++++++.-... .+.. ..+ .+..
T Consensus 1 m~IlvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~-~g~~v~~~QSN~E--Geli------------d~I-~~a~ 64 (140)
T PF01220_consen 1 MKILVINGPNLNLLGKREPEIYGTTTLEDIEQKCKETAAE-LGVEVEFFQSNHE--GELI------------DWI-HEAR 64 (140)
T ss_dssp EEEEEEE-TTGGGTTTSSHHHHTSSHHHHHHHHHHHHHHH-TTEEEEEEE-SSH--HHHH------------HHH-HHHT
T ss_pred CEEEEEcCCCcccccCCCCCcCCcCCHHHHHHHHHHHHHH-CCCeEEEEecCCH--HHHH------------HHH-HHHH
Confidence 7899998762 3552 4566677777777 7889888875532 0000 111 3445
Q ss_pred hccCeEEEecccc-CCCchHHHHHHHHhh
Q 040588 114 VHADGLLFGFPTR-FGSMASQMKAFFDST 141 (252)
Q Consensus 114 ~~aD~II~gsP~y-~g~~~~~~k~fld~l 141 (252)
.++|+||+=---| ..++ .+...|..+
T Consensus 65 ~~~dgiIINpga~thtS~--Ai~DAl~~~ 91 (140)
T PF01220_consen 65 DDVDGIIINPGAYTHTSI--AIRDALKAI 91 (140)
T ss_dssp CTTSEEEEE-GGGGHT-H--HHHHHHHCC
T ss_pred hhCCEEEEccchhccccH--HHHHHHHcC
Confidence 5689999977666 3333 455555443
No 185
>PRK05642 DNA replication initiation factor; Validated
Probab=39.05 E-value=34 Score=29.18 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=26.6
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 47 LKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.+.++|||+. .|.|. ++.++...+.+ .|..+-.+...+
T Consensus 45 ~~~l~l~G~~G~GKTH-Ll~a~~~~~~~-~~~~v~y~~~~~ 83 (234)
T PRK05642 45 ESLIYLWGKDGVGRSH-LLQAACLRFEQ-RGEPAVYLPLAE 83 (234)
T ss_pred CCeEEEECCCCCCHHH-HHHHHHHHHHh-CCCcEEEeeHHH
Confidence 3578889875 89997 57788777665 566666666544
No 186
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=39.02 E-value=2e+02 Score=23.98 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=37.3
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccC-CceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSID-GVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~-G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
..||++|=.. .+..+...+.+.+.+++ . |++++.+++.+. ++. .+.+.+||+|+|+-
T Consensus 31 ~~~i~~IptA-s~~~~~~~~~~~~a~~~-l~G~~~~~~~~~~~------------------~~~-~~~l~~ad~I~l~G 88 (212)
T cd03146 31 RPKVLFVPTA-SGDRDEYTARFYAAFES-LRGVEVSHLHLFDT------------------EDP-LDALLEADVIYVGG 88 (212)
T ss_pred CCeEEEECCC-CCCHHHHHHHHHHHHhh-ccCcEEEEEeccCc------------------ccH-HHHHhcCCEEEECC
Confidence 4567665533 22444566677777777 7 888877766431 111 57789999999986
No 187
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=39.01 E-value=2.1e+02 Score=28.99 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=25.0
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
...++|+||-+- .+++..+++.+.+ .|+++++++..
T Consensus 514 ~~~~~IlVID~g-ds~~~~l~~~L~~-----~G~~v~vv~~~ 549 (717)
T TIGR01815 514 GEGRRILLVDHE-DSFVHTLANYLRQ-----TGASVTTLRHS 549 (717)
T ss_pred CCCCEEEEEECC-ChhHHHHHHHHHH-----CCCeEEEEECC
Confidence 345689988755 5778777776654 47788877754
No 188
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=38.96 E-value=2.4e+02 Score=24.72 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=34.0
Q ss_pred ccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCcc
Q 040588 115 HADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYT 192 (252)
Q Consensus 115 ~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~ 192 (252)
++|.||+..|.. ..+...++.+.. .++...+ +...+. .... ....+.+.+...|..+++.+..
T Consensus 59 ~~dvvi~~v~~~-----~~~~~v~~~l~~-----~l~~g~i--vid~st--~~~~-~~~~~~~~~~~~g~~~~dapvs 121 (301)
T PRK09599 59 APRVVWLMVPAG-----EITDATIDELAP-----LLSPGDI--VIDGGN--SYYK-DDIRRAELLAEKGIHFVDVGTS 121 (301)
T ss_pred CCCEEEEEecCC-----cHHHHHHHHHHh-----hCCCCCE--EEeCCC--CChh-HHHHHHHHHHHcCCEEEeCCCC
Confidence 369999999862 234444444332 2322222 222222 1222 3455677888899998876543
No 189
>PRK06893 DNA replication initiation factor; Validated
Probab=38.88 E-value=1.2e+02 Score=25.68 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=25.8
Q ss_pred eEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 48 KIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 48 kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
..+++||.+ .|.|. ++.+++..+.. .+..+..+.+.
T Consensus 40 ~~l~l~G~~G~GKTh-L~~ai~~~~~~-~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSH-LLKAVSNHYLL-NQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHH-cCCCeEEeeHH
Confidence 467888875 79885 77788877755 56667666664
No 190
>PRK08116 hypothetical protein; Validated
Probab=38.79 E-value=69 Score=27.97 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=27.0
Q ss_pred eEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 48 KIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 48 kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.-+++||++ +|-|. +|.+|+..+.+ .|..+-++++.+
T Consensus 115 ~gl~l~G~~GtGKTh-La~aia~~l~~-~~~~v~~~~~~~ 152 (268)
T PRK08116 115 VGLLLWGSVGTGKTY-LAACIANELIE-KGVPVIFVNFPQ 152 (268)
T ss_pred ceEEEECCCCCCHHH-HHHHHHHHHHH-cCCeEEEEEHHH
Confidence 358889875 79985 67788888876 577776666554
No 191
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=38.66 E-value=53 Score=27.26 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=26.2
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
.+|+|+++|...+.+.-+..+++.+++ .|+.+.++-+.+.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk-~~I~v~vI~~G~~ 147 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKK-NNVSVDIINFGEI 147 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHH-cCCeEEEEEeCCC
Confidence 489999999844433334455556665 6777777777654
No 192
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=38.49 E-value=1.8e+02 Score=22.38 Aligned_cols=46 Identities=7% Similarity=0.083 Sum_probs=28.7
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
...+..+|++|+....-...-...++.|++.+.. ...++++.++++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~p~ivv~n 112 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELRE-----YRPEIPCIVVAN 112 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEE
Confidence 3457889999998775443333445666666542 234677777776
No 193
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=38.21 E-value=2.9e+02 Score=24.58 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=39.4
Q ss_pred hhhhhc---cCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEE
Q 040588 110 VDDLVH---ADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVY 186 (252)
Q Consensus 110 ~~~l~~---aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~v 186 (252)
..++.+ -|..|+..|- ..+...++.+.. +|-+.+++.|.|-. .+ ....+.+....+|+.+
T Consensus 57 v~dlp~~~~~DlAvi~vp~------~~v~~~l~e~~~-------~gvk~avI~s~Gf~---~~-~~~~l~~~a~~~girv 119 (291)
T PRK05678 57 VAEAVEATGANASVIYVPP------PFAADAILEAID-------AGIDLIVCITEGIP---VL-DMLEVKAYLERKKTRL 119 (291)
T ss_pred HHHHhhccCCCEEEEEcCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC---HH-HHHHHHHHHHHcCCEE
Confidence 345544 5999999993 334444444321 45556666665532 11 1236778888999999
Q ss_pred ecCC
Q 040588 187 VPIG 190 (252)
Q Consensus 187 v~~~ 190 (252)
+|+.
T Consensus 120 lGPN 123 (291)
T PRK05678 120 IGPN 123 (291)
T ss_pred ECCC
Confidence 9874
No 194
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=37.79 E-value=2e+02 Score=22.66 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=15.4
Q ss_pred CceEEEEEeCCchhHHHHHHHH
Q 040588 46 QLKIFIIFYSMYGHVEILARRM 67 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i 67 (252)
..||+++=.+..|.|..+...+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~ 34 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLK 34 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHh
Confidence 3577777767789988665554
No 195
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=37.78 E-value=66 Score=26.46 Aligned_cols=47 Identities=28% Similarity=0.329 Sum_probs=27.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
||||.|+... ||-....+++ +. .|+++..+. . .+++.++|+|||...
T Consensus 1 ~m~~~i~~~~--g~~~~~~~~l----~~-~g~~~~~~~--~-----------------------~~~l~~~dgiii~GG 47 (189)
T PRK13525 1 MMKIGVLALQ--GAVREHLAAL----EA-LGAEAVEVR--R-----------------------PEDLDEIDGLILPGG 47 (189)
T ss_pred CCEEEEEEcc--cCHHHHHHHH----HH-CCCEEEEeC--C-----------------------hhHhccCCEEEECCC
Confidence 6788888755 4333334443 33 455555543 2 235678999998764
No 196
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=37.04 E-value=2.9e+02 Score=24.93 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=49.0
Q ss_pred hhhhhccCeEEEeccccCCC----chHH-HHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCc
Q 040588 110 VDDLVHADGLLFGFPTRFGS----MASQ-MKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGM 184 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~----~~~~-~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~ 184 (252)
.+++.++.. .|+|||- -|-+ |-.++ .+... .+.++|++++.++-+ .....++.......||
T Consensus 113 ve~lA~~s~----VPViNgLtD~~HP~Q~LADl~-Ti~E~--~g~l~g~k~a~vGDg-------NNv~nSl~~~~a~~G~ 178 (310)
T COG0078 113 LEELAKYSG----VPVINGLTDEFHPCQALADLM-TIKEH--FGSLKGLKLAYVGDG-------NNVANSLLLAAAKLGM 178 (310)
T ss_pred HHHHHHhCC----CceEcccccccCcHHHHHHHH-HHHHh--cCcccCcEEEEEcCc-------chHHHHHHHHHHHhCC
Confidence 456666664 4888764 2322 22222 12211 134888888766543 2355677777778888
Q ss_pred EEecCCccCCCccccccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHH
Q 040588 185 VYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKY 236 (252)
Q Consensus 185 ~vv~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~ 236 (252)
.+.-. +| -...|+++-.+.|+++++.
T Consensus 179 dv~ia----~P----------------------k~~~p~~~~~~~a~~~a~~ 204 (310)
T COG0078 179 DVRIA----TP----------------------KGYEPDPEVVEKAKENAKE 204 (310)
T ss_pred eEEEE----CC----------------------CcCCcCHHHHHHHHHHHHh
Confidence 76311 00 0135788888888777653
No 197
>PRK12377 putative replication protein; Provisional
Probab=36.89 E-value=1.4e+02 Score=25.83 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=41.5
Q ss_pred eEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 48 KIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 48 kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
+-++++|.+ +|-|. +|.+|+..+.+ .|..|.++.+.+... ...... ........+ ...+.++|.|||-=
T Consensus 102 ~~l~l~G~~GtGKTh-La~AIa~~l~~-~g~~v~~i~~~~l~~-~l~~~~---~~~~~~~~~-l~~l~~~dLLiIDD 171 (248)
T PRK12377 102 TNFVFSGKPGTGKNH-LAAAIGNRLLA-KGRSVIVVTVPDVMS-RLHESY---DNGQSGEKF-LQELCKVDLLVLDE 171 (248)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHH-cCCCeEEEEHHHHHH-HHHHHH---hccchHHHH-HHHhcCCCEEEEcC
Confidence 467888865 79886 77788888876 688887777765311 000000 000011122 56778999999764
No 198
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=36.64 E-value=1.1e+02 Score=26.61 Aligned_cols=68 Identities=19% Similarity=0.108 Sum_probs=40.8
Q ss_pred CCCCCCCceEEEEEeCCchhHHHHHHHHHHhccccCCc-eEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCe
Q 040588 40 TTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGV-EGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADG 118 (252)
Q Consensus 40 ~~~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~-ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ 118 (252)
.-+|....||++|=.. .+.-+..++...+.++. .|+ +++.+++.+.. +.+-+++ .+.+.+||+
T Consensus 22 ~lag~~~~rI~~iptA-S~~~~~~~~~~~~~~~~-lG~~~v~~l~i~~r~-------------~a~~~~~-~~~l~~ad~ 85 (250)
T TIGR02069 22 SRAGGEDAIIVIITSA-SEEPREVGERYITIFSR-LGVKEVKILDVRERE-------------DASDENA-IALLSNATG 85 (250)
T ss_pred HHhCCCCceEEEEeCC-CCChHHHHHHHHHHHHH-cCCceeEEEecCChH-------------HccCHHH-HHHHhhCCE
Confidence 3445556788877632 23333456666677766 677 57888875310 0011222 567899999
Q ss_pred EEEec
Q 040588 119 LLFGF 123 (252)
Q Consensus 119 II~gs 123 (252)
|+|+.
T Consensus 86 I~~~G 90 (250)
T TIGR02069 86 IFFTG 90 (250)
T ss_pred EEEeC
Confidence 99984
No 199
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=36.37 E-value=51 Score=28.99 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=27.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEE
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYR 83 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~ 83 (252)
|||+|+-+...|+.. .+..+++.+.+ .|.++.++-
T Consensus 1 ~~i~~~~g~~~g~~~-~~~~La~~L~~-~g~eV~vv~ 35 (348)
T TIGR01133 1 KKVVLAAGGTGGHIF-PALAVAEELIK-RGVEVLWLG 35 (348)
T ss_pred CeEEEEeCccHHHHh-HHHHHHHHHHh-CCCEEEEEe
Confidence 589988888888877 66677788877 788888875
No 200
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=35.98 E-value=73 Score=25.79 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=27.5
Q ss_pred CceEEEEEeC-CchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFIIFYS-MYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S-~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
||+|+-|.++ .+|.|- +.+.|...+.+ .|..|-.+...
T Consensus 1 m~~Il~ivG~k~SGKTT-Lie~lv~~L~~-~G~rVa~iKH~ 39 (161)
T COG1763 1 MMKILGIVGYKNSGKTT-LIEKLVRKLKA-RGYRVATVKHA 39 (161)
T ss_pred CCcEEEEEecCCCChhh-HHHHHHHHHHh-CCcEEEEEEec
Confidence 6888866655 588885 67777788877 78777666544
No 201
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=35.69 E-value=2.1e+02 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=20.1
Q ss_pred CCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 75 DGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 75 ~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.|++++++.+.+... ...++.++|+|||..-
T Consensus 22 aG~~v~~v~~~~~~~-------------------~~~~l~~~d~liipGG 52 (238)
T cd01740 22 AGFEAEDVWHNDLLA-------------------GRKDLDDYDGVVLPGG 52 (238)
T ss_pred cCCCEEEEeccCCcc-------------------ccCCHhhCCEEEECCC
Confidence 577888887765210 1235778999988654
No 202
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=35.55 E-value=78 Score=29.41 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=18.7
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
+||++|-.|.. .-+++.+ ++ .|+++.++.-
T Consensus 193 ~~I~viD~g~k---~ni~~~L----~~-~G~~v~vvp~ 222 (382)
T CHL00197 193 LKIIVIDFGVK---YNILRRL----KS-FGCSITVVPA 222 (382)
T ss_pred CEEEEEECCcH---HHHHHHH----HH-CCCeEEEEcC
Confidence 68999987543 3344444 44 5777777753
No 203
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=35.42 E-value=2.9e+02 Score=23.70 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=51.3
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRF 127 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~ 127 (252)
||-+|-...-| |..+.+.+++....+.+++++++--.-...++|.... .. ..-+-.+.|.||++||--.
T Consensus 4 kig~ik~GniG-ts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaa--------v~--~~~e~~~pDfvi~isPNpa 72 (277)
T COG1927 4 KIGFIKCGNIG-TSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAA--------VT--EMLEEFNPDFVIYISPNPA 72 (277)
T ss_pred EEEEEEecccc-hHHHHHHHHHhhcccCCceEEEeccccccChHHHHHH--------HH--HHHHhcCCCEEEEeCCCCC
Confidence 45555422223 6678888888776657888887765443333333210 00 1223456899999999754
Q ss_pred CCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 128 GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 128 g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
.-=|...+..+.. .+.++.+++-
T Consensus 73 aPGP~kARE~l~~----------s~~PaiiigD 95 (277)
T COG1927 73 APGPKKAREILSD----------SDVPAIIIGD 95 (277)
T ss_pred CCCchHHHHHHhh----------cCCCEEEecC
Confidence 4334443433322 4677766654
No 204
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=35.35 E-value=62 Score=31.69 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=24.6
Q ss_pred ceEEEEEeCCch--hHHHHHHHHHHhccccCCceEE
Q 040588 47 LKIFIIFYSMYG--HVEILARRMKKGVDSIDGVEGV 80 (252)
Q Consensus 47 ~kIlIIy~S~~G--nT~~la~~i~~~l~~~~G~ev~ 80 (252)
||+++|-.+++| +|...++.+.+.+++ .|.++.
T Consensus 1 ~~ilavtacp~GiAht~mAaeaL~~AA~~-~G~~i~ 35 (563)
T PRK10712 1 MKTLLIIDANLGQARAYMAKTLLGAAAAK-AGLEII 35 (563)
T ss_pred CCeEEEecCCCcHHHHHHHHHHHHHHHHH-CCCccc
Confidence 578888888876 566666888888877 776653
No 205
>PRK11538 ribosome-associated protein; Provisional
Probab=35.28 E-value=1.1e+02 Score=22.79 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCCCchHHHHHHHH
Q 040588 60 VEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFD 139 (252)
Q Consensus 60 T~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld 139 (252)
++.+++.+++.+.+..+-++.++++++.. .-+|.+||+|-.= ..++++..+
T Consensus 3 ~~~~~~~i~~~l~dkKa~DI~vlDv~~~~-------------------------~~~Dy~VIatg~S----~rh~~aia~ 53 (105)
T PRK11538 3 GKALQDFVIDKIDDLKGQDIIALDVQGKS-------------------------SITDCMIICTGTS----SRHVMSIAD 53 (105)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCCC-------------------------cccCEEEEEEeCC----HHHHHHHHH
Confidence 46778888888877567789999998641 1368999998553 344555544
Q ss_pred hh
Q 040588 140 ST 141 (252)
Q Consensus 140 ~l 141 (252)
.+
T Consensus 54 ~v 55 (105)
T PRK11538 54 HV 55 (105)
T ss_pred HH
Confidence 44
No 206
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=35.22 E-value=21 Score=26.29 Aligned_cols=40 Identities=13% Similarity=-0.062 Sum_probs=21.9
Q ss_pred chhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 109 AVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 109 ~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
+.+.+.+||.|++---++-- .+..++. ..++||.+.+.-.
T Consensus 44 t~e~leWAdiIfVMEr~Hrq-------kL~krf~-----~~lk~kRviCLDI 83 (109)
T COG4551 44 TREQLEWADIIFVMERVHRQ-------KLQKRFK-----ASLKGKRVICLDI 83 (109)
T ss_pred cHHHhhhhhhhhhHHHHHHH-------HHHHHhh-----HHhcCCeEEEEeC
Confidence 36788999988753222211 1112222 2578898866654
No 207
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=35.05 E-value=98 Score=23.34 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=30.9
Q ss_pred ceEEEEEeCCc---hhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 47 LKIFIIFYSMY---GHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 47 ~kIlIIy~S~~---GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
|||.|||+-.+ --+-.=|..|.+.+.+ .+.++..+.+...
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~-~~y~v~~i~i~k~ 43 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDK-EKYEVIPIYIDKD 43 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHT-TTEEEEEEEETTT
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhh-hcceEEEEeecCC
Confidence 79999998753 3466777888888877 7788888887753
No 208
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=34.77 E-value=1.1e+02 Score=24.91 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=42.3
Q ss_pred ceEEEEEe-CC-chhHHHHHHHHHHhccccCCceEEEEECCCC-CCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 47 LKIFIIFY-SM-YGHVEILARRMKKGVDSIDGVEGVLYRVPET-LPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 47 ~kIlIIy~-S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~-~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
|||++|.. +. .+...+.++.+... .. .|.++.++...+. ..+ ..+..+ ..++..||.|| +|
T Consensus 1 ~r~V~vtld~~~~~al~~aa~~l~~~-~~-p~l~l~~~~~~el~~~~------------~~~~~~-~~aia~ADii~-~s 64 (164)
T PF11965_consen 1 MRFVIVTLDEHYNSALYRAAARLNRD-HC-PGLELSVFAAAELERDP------------EALEEC-EAAIARADIIF-GS 64 (164)
T ss_pred CEEEEEeCchhhhHHHHHHHHHHhhc-cC-CCeEEEEEeHHHhhcCh------------HHHHHH-HHHHHhCCEEE-ee
Confidence 46776663 22 45556666666555 22 5788999888765 111 111222 57888999654 55
Q ss_pred cccCCCchHHHHHHHH
Q 040588 124 PTRFGSMASQMKAFFD 139 (252)
Q Consensus 124 P~y~g~~~~~~k~fld 139 (252)
=++....-..+...++
T Consensus 65 mlF~ed~v~~l~~~L~ 80 (164)
T PF11965_consen 65 MLFIEDHVRPLLPALE 80 (164)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 5544443333343333
No 209
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=34.64 E-value=88 Score=28.08 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=31.6
Q ss_pred CCceEEEEEeCCc---hhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYSMY---GHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S~~---GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+++||+|+++..+ --+-+-++.+++.+.+ .|.++..+++..
T Consensus 2 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~-~~~~~~~~~~~~ 45 (333)
T PRK01966 2 MKMRVALLFGGRSAEHEVSLVSAKSVLKALDK-EKYEVVPIGITK 45 (333)
T ss_pred CCcEEEEEeCCCCCcchhhHHHHHHHHHHhcc-cCCEEEEEEECC
Confidence 4679999998753 3355677888888887 789999888875
No 210
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=34.50 E-value=24 Score=27.97 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=18.0
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhh
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFH 143 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~ 143 (252)
+.+.++|.||++.|.+. ++.+++++..
T Consensus 65 ~a~~~ad~IiiavPs~~------~~~~~~~l~~ 91 (157)
T PF01210_consen 65 EALEDADIIIIAVPSQA------HREVLEQLAP 91 (157)
T ss_dssp HHHTT-SEEEE-S-GGG------HHHHHHHHTT
T ss_pred HHhCcccEEEecccHHH------HHHHHHHHhh
Confidence 45788999999999974 4667777654
No 211
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=34.40 E-value=63 Score=22.29 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=23.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDS 73 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~ 73 (252)
+||.+|-.|+++-+..++++|++....
T Consensus 7 K~IelvGtSp~S~d~Ai~~Ai~RA~~t 33 (71)
T COG3360 7 KKIELVGTSPTSIDAAIANAIARAADT 33 (71)
T ss_pred EEEEEEecCCccHHHHHHHHHHHHHhh
Confidence 578899899999999999999887754
No 212
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=33.73 E-value=1.5e+02 Score=29.24 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=47.5
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
...+++++|.+..-.+..+.+.+.+.+.. .-.+++.+++.+.. .. ....+..+++|||..+
T Consensus 52 ~~~~l~~l~d~~~~~s~~~~~n~~kil~~-~K~~~~~id~~~~~-----------------~~-~~p~l~~Y~~vII~~~ 112 (585)
T PF09960_consen 52 EKEKLLILYDSNGELSMDIKENFKKILEY-MKIPYDTIDIAEFI-----------------KS-SIPSLSDYRGVIILTT 112 (585)
T ss_pred ccceEEEEECCCChHHHHHHHHHHHHHHH-hccccEeeeccccc-----------------cc-cCCcccceeEEEEEec
Confidence 34577788888765667777777777765 45567777776431 11 1455677888887766
Q ss_pred ccCCCchHHHHHHHHh
Q 040588 125 TRFGSMASQMKAFFDS 140 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~ 140 (252)
-...--...+++|...
T Consensus 113 ~l~~l~~~~i~~yV~~ 128 (585)
T PF09960_consen 113 DLDPLGNEAIMNYVEN 128 (585)
T ss_pred cccccChHHHHHHHHc
Confidence 5422222556666653
No 213
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=33.52 E-value=1.6e+02 Score=28.11 Aligned_cols=75 Identities=11% Similarity=0.164 Sum_probs=43.0
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc-
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR- 126 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y- 126 (252)
.++||. +|+.-..|..+++.|++ .|+++++++++...|. |...+ .+.+.+...||+.-=-|
T Consensus 342 DvtIva---~G~~v~~Al~Aa~~L~~-~GI~~~VIdl~tlkPl-------------D~~~i-~~sv~kt~~vvtvEE~~~ 403 (464)
T PRK11892 342 DVTIVS---FSIGMTYALKAAEELAK-EGIDAEVIDLRTIRPM-------------DTETI-VESVKKTNRLVTVEEGWP 403 (464)
T ss_pred CEEEEE---ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCcC-------------CHHHH-HHHHHhcCeEEEEeCCCc
Confidence 566665 45555566666666766 7999999999876441 11111 34455555555443222
Q ss_pred CCCchHHHHHHHHh
Q 040588 127 FGSMASQMKAFFDS 140 (252)
Q Consensus 127 ~g~~~~~~k~fld~ 140 (252)
.|++-..+..++-.
T Consensus 404 ~gGlG~~va~~l~e 417 (464)
T PRK11892 404 QSGVGAEIAARVME 417 (464)
T ss_pred CCcHHHHHHHHHHH
Confidence 45566666655543
No 214
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=33.40 E-value=72 Score=26.99 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=30.3
Q ss_pred eEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 48 KIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 48 kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
||+++..+. .|.+.+.+..+++.+.+ .|.+|.++.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 41 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAE-KGHEVTIISLDKG 41 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 577777664 47778888889999987 7899998876543
No 215
>PRK06526 transposase; Provisional
Probab=33.31 E-value=80 Score=27.40 Aligned_cols=73 Identities=10% Similarity=-0.022 Sum_probs=38.4
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 47 LKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 47 ~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
.+-++++|.+ +|.|. +|.+|...+.. .|..|.++...+.. ..+.... ........ ...+..+|.|||--.-
T Consensus 98 ~~nlll~Gp~GtGKTh-La~al~~~a~~-~g~~v~f~t~~~l~--~~l~~~~---~~~~~~~~-l~~l~~~dlLIIDD~g 169 (254)
T PRK06526 98 KENVVFLGPPGTGKTH-LAIGLGIRACQ-AGHRVLFATAAQWV--ARLAAAH---HAGRLQAE-LVKLGRYPLLIVDEVG 169 (254)
T ss_pred CceEEEEeCCCCchHH-HHHHHHHHHHH-CCCchhhhhHHHHH--HHHHHHH---hcCcHHHH-HHHhccCCEEEEcccc
Confidence 3457888775 79886 56666666555 57666554433210 0000000 00111111 4567789999997665
Q ss_pred cC
Q 040588 126 RF 127 (252)
Q Consensus 126 y~ 127 (252)
+.
T Consensus 170 ~~ 171 (254)
T PRK06526 170 YI 171 (254)
T ss_pred cC
Confidence 43
No 216
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=33.25 E-value=32 Score=27.15 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=26.9
Q ss_pred HHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 65 RRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 65 ~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
+.+.+.+++ .|++++.+++.+... .++ .+.|.+||+|+|+
T Consensus 3 ~~~~~~f~~-~g~~v~~l~~~~~~~----------------~~~-~~~i~~ad~I~~~ 42 (154)
T PF03575_consen 3 EKFRKAFRK-LGFEVDQLDLSDRND----------------ADI-LEAIREADAIFLG 42 (154)
T ss_dssp HHHHHHHHH-CT-EEEECCCTSCGH----------------HHH-HHHHHHSSEEEE-
T ss_pred HHHHHHHHH-CCCEEEEEeccCCCh----------------HHH-HHHHHhCCEEEEC
Confidence 566677777 788888877775311 122 6778999999987
No 217
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.16 E-value=3.5e+02 Score=24.05 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=34.0
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
.+.++|.....-.+...++...+.+++ .|++++++++.+..
T Consensus 33 p~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 73 (285)
T PRK14189 33 PGLAVILVGDNPASQVYVRNKVKACED-NGFHSLKDRYPADL 73 (285)
T ss_pred CeEEEEEeCCCchHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 577788877777778888999999988 89999999998653
No 218
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=32.81 E-value=86 Score=28.59 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=27.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+|+.|||.|.+|. ..++.+.+.+++ .|.++..+.+..
T Consensus 125 k~vaiiYd~~~~~--~~lq~l~~~~~~-~g~~v~~~~~~~ 161 (371)
T cd06388 125 NRFVFLYDTDRGY--SILQAIMEKAGQ-NGWQVSAICVEN 161 (371)
T ss_pred eEEEEEecCCccH--HHHHHHHHhhHh-cCCeeeeEEecc
Confidence 6899999888776 347888888877 787776655543
No 219
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=32.72 E-value=1.8e+02 Score=21.90 Aligned_cols=36 Identities=11% Similarity=0.326 Sum_probs=24.3
Q ss_pred eEEEEEeCCc--hhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 48 KIFIIFYSMY--GHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 48 kIlIIy~S~~--GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+++||-... +..+ .+.+.+.+.+ .+.+++++....
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~-~~~~~~~~~t~~ 38 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRA-AGIDYEVIETES 38 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHH-TTCEEEEEEESS
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHH-cCCceEEEEEec
Confidence 5778886543 4444 4777777777 677888777654
No 220
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=32.71 E-value=2.6e+02 Score=23.35 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=41.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe---
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG--- 122 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g--- 122 (252)
||+||+|- .-.+.|.-|++.+.+ .|+++.+++=.+. ... .-+-.+.|+||++
T Consensus 1 ~~~IL~ID-NyDSFtyNLv~yl~~-----lg~~v~V~rnd~~------------------~~~-~~~~~~pd~iviSPGP 55 (191)
T COG0512 1 MMMILLID-NYDSFTYNLVQYLRE-----LGAEVTVVRNDDI------------------SLE-LIEALKPDAIVISPGP 55 (191)
T ss_pred CceEEEEE-CccchHHHHHHHHHH-----cCCceEEEECCcc------------------CHH-HHhhcCCCEEEEcCCC
Confidence 56788775 346778888887765 3445665553211 111 1223458999995
Q ss_pred -ccccCCCchHHHHHHH
Q 040588 123 -FPTRFGSMASQMKAFF 138 (252)
Q Consensus 123 -sP~y~g~~~~~~k~fl 138 (252)
+|.-.|.....++.|-
T Consensus 56 G~P~d~G~~~~~i~~~~ 72 (191)
T COG0512 56 GTPKDAGISLELIRRFA 72 (191)
T ss_pred CChHHcchHHHHHHHhc
Confidence 6776666666666663
No 221
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=32.51 E-value=1.1e+02 Score=25.22 Aligned_cols=44 Identities=27% Similarity=0.313 Sum_probs=28.9
Q ss_pred EEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 50 FIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 50 lIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
+||.+ ..||...+++.+.+ .|+++++++- ..++.++|+||+..|
T Consensus 2 ~~~~~-~~gn~~~l~~~l~~-----~g~~v~v~~~-------------------------~~~l~~~d~lii~G~ 45 (196)
T TIGR01855 2 VIIDY-GVGNLGSVKRALKR-----VGAEPVVVKD-------------------------SKEAELADKLILPGV 45 (196)
T ss_pred EEEec-CCcHHHHHHHHHHH-----CCCcEEEEcC-------------------------HHHhccCCEEEECCC
Confidence 44543 46888877777654 4667776662 124567999999775
No 222
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=32.47 E-value=2.4e+02 Score=22.48 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=52.3
Q ss_pred CCCCCCCCceEEEEEeCCc-hhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccC
Q 040588 39 TTTSTTGQLKIFIIFYSMY-GHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHAD 117 (252)
Q Consensus 39 ~~~~~~~~~kIlIIy~S~~-GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD 117 (252)
+|..++....-+++|.|++ |.+..-++.+. + .|.+|......+... +.. .+. + +.++..|-
T Consensus 17 ~~~~~~a~~~~~~vyksPnCGCC~~w~~~mk----~-~Gf~Vk~~~~~d~~a---lK~--------~~g-I-p~e~~SCH 78 (149)
T COG3019 17 STGPAQAQATEMVVYKSPNCGCCDEWAQHMK----A-NGFEVKVVETDDFLA---LKR--------RLG-I-PYEMQSCH 78 (149)
T ss_pred cccchhcceeeEEEEeCCCCccHHHHHHHHH----h-CCcEEEEeecCcHHH---HHH--------hcC-C-Chhhcccc
Confidence 3444455556678899984 88887777664 3 688888887776421 000 011 2 56788899
Q ss_pred eEEEeccccCCCchHH
Q 040588 118 GLLFGFPTRFGSMASQ 133 (252)
Q Consensus 118 ~II~gsP~y~g~~~~~ 133 (252)
..||..-..-|.+|..
T Consensus 79 T~VI~Gy~vEGHVPa~ 94 (149)
T COG3019 79 TAVINGYYVEGHVPAE 94 (149)
T ss_pred EEEEcCEEEeccCCHH
Confidence 9999988889999864
No 223
>PRK00074 guaA GMP synthase; Reviewed
Probab=32.37 E-value=1.5e+02 Score=28.57 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=22.5
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
+.+|+||-+ ...+|..+++++.+ .|+.++++...
T Consensus 3 ~~~i~vlD~-Gsq~~~li~r~lre-----lg~~~~v~p~~ 36 (511)
T PRK00074 3 HDKILILDF-GSQYTQLIARRVRE-----LGVYSEIVPYD 36 (511)
T ss_pred CCEEEEEEC-CCCcHHHHHHHHHH-----CCCeEEEEECC
Confidence 456887765 45667777777655 46677777643
No 224
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=32.01 E-value=2.3e+02 Score=22.88 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=17.1
Q ss_pred CchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 56 MYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 56 ~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
..+||..+++++.+ .|++++++...
T Consensus 7 g~~~~~~l~~~l~~-----~g~~~~~~~~~ 31 (188)
T TIGR00888 7 GSQYTQLIARRLRE-----LGVYSELVPNT 31 (188)
T ss_pred CchHHHHHHHHHHH-----cCCEEEEEeCC
Confidence 45788877777733 46778777654
No 225
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.98 E-value=3.8e+02 Score=24.06 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=33.5
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
..+.++|.....-.+...++...+.+++ .|++++++++.+.
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 73 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEE-AGIRSLEHRLPAD 73 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 3577788877777778888888888888 8999999999865
No 226
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=31.91 E-value=1.1e+02 Score=22.26 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=25.5
Q ss_pred EEEEe-CCchh--HHHHHHHHHHhccccCCceEEEEECCC
Q 040588 50 FIIFY-SMYGH--VEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 50 lIIy~-S~~Gn--T~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
++||+ |.+|+ |++=.+.+..-|.. .+++.+.+++..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~-k~I~f~eiDI~~ 40 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEA-KKIEFEEVDISM 40 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHH-CCCceEEEecCC
Confidence 45565 46776 55556677777777 788999999874
No 227
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=31.76 E-value=3.6e+02 Score=23.69 Aligned_cols=108 Identities=11% Similarity=0.151 Sum_probs=52.3
Q ss_pred HHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 63 LARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 63 la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
|...++..+.+ .|.++.+++.....- ..+....... ..+..++ .+.+.++|.||+..|.- .+...++.+.
T Consensus 11 mG~~la~~L~~-~g~~V~~~dr~~~~~-~~l~~~g~~~-~~s~~~~-~~~~~~~dvIi~~vp~~------~~~~v~~~l~ 80 (298)
T TIGR00872 11 MGANIVRRLAK-RGHDCVGYDHDQDAV-KAMKEDRTTG-VANLREL-SQRLSAPRVVWVMVPHG------IVDAVLEELA 80 (298)
T ss_pred HHHHHHHHHHH-CCCEEEEEECCHHHH-HHHHHcCCcc-cCCHHHH-HhhcCCCCEEEEEcCch------HHHHHHHHHH
Confidence 44555555555 677887776543210 1111111110 0111111 23345689999999873 3455555543
Q ss_pred hhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCc
Q 040588 143 HLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGY 191 (252)
Q Consensus 143 ~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~ 191 (252)
. .+ +|+. +...++. ... ....+...+...|..+++.+.
T Consensus 81 ~-----~l~~g~i---vid~st~--~~~-~t~~~~~~~~~~g~~~vda~v 119 (298)
T TIGR00872 81 P-----TLEKGDI---VIDGGNS--YYK-DSLRRYKLLKEKGIHLLDCGT 119 (298)
T ss_pred h-----hCCCCCE---EEECCCC--Ccc-cHHHHHHHHHhcCCeEEecCC
Confidence 2 22 3443 2332221 111 233455567778988887654
No 228
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=31.35 E-value=96 Score=27.30 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=31.4
Q ss_pred CCceEEEEEeCC---chhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 45 GQLKIFIIFYSM---YGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 45 ~~~kIlIIy~S~---~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
.++||+|+++.. .--+.+-++++++.|++ .|.++..+++.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~-~g~~~~~~~~~ 44 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLIS-QGYDAVGVDAS 44 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHH-cCCEEEEEcCC
Confidence 367999999754 34567788899999988 89998888764
No 229
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=31.32 E-value=2.4e+02 Score=23.45 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=44.1
Q ss_pred CCcccchhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcC
Q 040588 104 EVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHG 183 (252)
Q Consensus 104 ~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G 183 (252)
+.|+. ..++.+.|+|++|.. ++++..+...++++. --|+.++-+.+- + ++..+.+.+.++|
T Consensus 92 ~Ap~~-L~~~~~~daiFIGGg---~~i~~ile~~~~~l~-------~ggrlV~naitl-------E-~~~~a~~~~~~~g 152 (187)
T COG2242 92 DAPEA-LPDLPSPDAIFIGGG---GNIEEILEAAWERLK-------PGGRLVANAITL-------E-TLAKALEALEQLG 152 (187)
T ss_pred cchHh-hcCCCCCCEEEECCC---CCHHHHHHHHHHHcC-------cCCeEEEEeecH-------H-HHHHHHHHHHHcC
Confidence 33443 455668999999987 888888888888764 245666555541 2 3455667778888
Q ss_pred c-EEec
Q 040588 184 M-VYVP 188 (252)
Q Consensus 184 ~-~vv~ 188 (252)
+ .++-
T Consensus 153 ~~ei~~ 158 (187)
T COG2242 153 GREIVQ 158 (187)
T ss_pred CceEEE
Confidence 8 5554
No 230
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=31.31 E-value=94 Score=24.43 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=34.1
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
++|+|+--|. .+.+.++..+.+ .|+.+.+.+-... .+ .+.+.+||.||.+++.-
T Consensus 29 k~v~VvGrs~-----~vG~pla~lL~~-~gatV~~~~~~t~-------------------~l-~~~v~~ADIVvsAtg~~ 82 (140)
T cd05212 29 KKVLVVGRSG-----IVGAPLQCLLQR-DGATVYSCDWKTI-------------------QL-QSKVHDADVVVVGSPKP 82 (140)
T ss_pred CEEEEECCCc-----hHHHHHHHHHHH-CCCEEEEeCCCCc-------------------CH-HHHHhhCCEEEEecCCC
Confidence 4787765553 334444444444 6778877764321 12 45689999999999876
No 231
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=31.26 E-value=1.6e+02 Score=28.94 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=30.8
Q ss_pred ccccCCCCCCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 35 QNQLTTTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 35 ~~~~~~~~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
.||..-..+..++||.||-++ +++..++..+++ .|.++.+++....
T Consensus 11 ~~~~~~~~~~~~k~IgIIGgG------qlg~mla~aA~~-lG~~Vi~ld~~~~ 56 (577)
T PLN02948 11 NRSVKPVHGVSETVVGVLGGG------QLGRMLCQAASQ-MGIKVKVLDPLED 56 (577)
T ss_pred CCCCccccCCCCCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 355555666777888888766 455555556666 7888888876543
No 232
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=31.22 E-value=4.5e+02 Score=24.73 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=37.9
Q ss_pred ccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCCh-HHH-HHHHHHHHHHcCcEEecCC
Q 040588 115 HADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQ-ETT-AWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 115 ~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~-~~~-l~~l~~~l~~~G~~vv~~~ 190 (252)
.-|.+|+..|- ..+...++.+.. .|-+.+++.+.|....+. ... -..+.+.....|+.++|..
T Consensus 64 ~~Dlavi~vp~------~~~~~~l~e~~~-------~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPn 128 (447)
T TIGR02717 64 PVDLAVIVVPA------KYVPQVVEECGE-------KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPN 128 (447)
T ss_pred CCCEEEEecCH------HHHHHHHHHHHh-------cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecC
Confidence 45999999983 444555555432 344455555555432221 122 3567788888999999863
No 233
>PF00819 Myotoxins: Myotoxin; InterPro: IPR000881 Myotoxins [, , ] are small basic peptides (42 to 45 residues) found in rattlesnake venom that cause severe muscle necrosis by a non-enzymatic mechanism. Myotoxins act extremely rapidly and serve two primary biological functions: limiting the flight of prey by causing instantaneous paralysis of the hind limbs and promoting rapid death by paralysis of the diaphragm. Myotoxins have a well-conserved structure containing six cysteines involved in three disulphide bridges.; GO: 0019871 sodium channel inhibitor activity, 0005576 extracellular region; PDB: 1H5O_A 1Z99_A.
Probab=31.10 E-value=11 Score=22.63 Aligned_cols=10 Identities=70% Similarity=1.517 Sum_probs=8.0
Q ss_pred CCCCCCcCcc
Q 040588 3 KGGGCFPSKK 12 (252)
Q Consensus 3 ~~~~~~~~~~ 12 (252)
|||-|||..+
T Consensus 7 kgghcfpk~~ 16 (43)
T PF00819_consen 7 KGGHCFPKEK 16 (43)
T ss_dssp CTEEEEECCC
T ss_pred cCCccCCcCc
Confidence 7889999655
No 234
>PRK06444 prephenate dehydrogenase; Provisional
Probab=30.70 E-value=82 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=17.2
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEE
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGV 80 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~ 80 (252)
|||.||=++ -+|.+.++.-+++ .|.+|.
T Consensus 1 ~~~~iiG~~-----G~mG~~~~~~~~~-~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKN-----GRLGRVLCSILDD-NGLGVY 28 (197)
T ss_pred CEEEEEecC-----CcHHHHHHHHHHh-CCCEEE
Confidence 577777643 2456666666766 676553
No 235
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.66 E-value=92 Score=27.75 Aligned_cols=37 Identities=24% Similarity=0.054 Sum_probs=30.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEE
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYR 83 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~ 83 (252)
|++|.|++-....+...+++.+.+-+++ .|+++.+..
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~ 40 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDE 40 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 5579999888788888999999998887 788876644
No 236
>PRK06851 hypothetical protein; Provisional
Probab=30.49 E-value=1.3e+02 Score=27.87 Aligned_cols=55 Identities=13% Similarity=0.227 Sum_probs=37.8
Q ss_pred CCCCCCCccccccccCCCCCCCCceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 24 SNPDGVSSNLDQNQLTTTSTTGQLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
..|.|.-+.++... +...|+.+|-+.+ +|.|. ++..+++.+.+ .|..|+++...-
T Consensus 197 ~Tp~G~~s~~~~l~------~~~~~~~~i~G~pG~GKst-l~~~i~~~a~~-~G~~v~~~hC~~ 252 (367)
T PRK06851 197 ITPKGAVDFVPSLT------EGVKNRYFLKGRPGTGKST-MLKKIAKAAEE-RGFDVEVYHCGF 252 (367)
T ss_pred cCCCcHHhhHHhHh------cccceEEEEeCCCCCcHHH-HHHHHHHHHHh-CCCeEEEEeCCC
Confidence 35778777666432 3446777777765 68775 56666666666 798999988763
No 237
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=30.48 E-value=1.1e+02 Score=27.78 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=33.5
Q ss_pred ceEEEEEeCCch-hHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 47 LKIFIIFYSMYG-HVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 47 ~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
.++-||.+|..| ++..+++.+.+.+++ .|.+..++-+.+..
T Consensus 233 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~-~gkk~y~i~~~~in 274 (332)
T TIGR00322 233 KKFGVVLSSKGGQGRLRLAKNLKKNLEE-AGKTVLIILLSNVS 274 (332)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHH-cCCcEEEEEeCCCC
Confidence 467888888765 577899999999998 89898888888754
No 238
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=30.29 E-value=40 Score=27.85 Aligned_cols=83 Identities=14% Similarity=0.104 Sum_probs=42.1
Q ss_pred ceEEEEEeCC-----------chhHHHHHHHHHHhccccCCceEEEEECCCCCC-HHHHhcccCCCCCCCCcccchhhhh
Q 040588 47 LKIFIIFYSM-----------YGHVEILARRMKKGVDSIDGVEGVLYRVPETLP-AEVLEQMKVPQKGIEVPVIAVDDLV 114 (252)
Q Consensus 47 ~kIlIIy~S~-----------~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p-~~~~~~~~~~~~~d~~~~~~~~~l~ 114 (252)
+||||--+.. +-+|-++..+|++.+.. .|++|.++.=....+ +....... .....+|-+...+.+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~-~Ga~V~li~g~~~~~~p~~~~~i~-v~sa~em~~~~~~~~~ 81 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAAR-RGAEVTLIHGPSSLPPPPGVKVIR-VESAEEMLEAVKELLP 81 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHH-TT-EEEEEE-TTS----TTEEEEE--SSHHHHHHHHHHHGG
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHH-CCCEEEEEecCccccccccceEEE-ecchhhhhhhhccccC
Confidence 4677766542 25577889999999988 899999988653321 11110000 0011122222245567
Q ss_pred ccCeEEEeccccCCCch
Q 040588 115 HADGLLFGFPTRFGSMA 131 (252)
Q Consensus 115 ~aD~II~gsP~y~g~~~ 131 (252)
++|.+|.+.-+=.+.+.
T Consensus 82 ~~Di~I~aAAVsDf~p~ 98 (185)
T PF04127_consen 82 SADIIIMAAAVSDFRPE 98 (185)
T ss_dssp GGSEEEE-SB--SEEES
T ss_pred cceeEEEecchhheeeh
Confidence 89999999777555543
No 239
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=30.07 E-value=75 Score=27.24 Aligned_cols=26 Identities=4% Similarity=-0.156 Sum_probs=19.3
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
...+.+||.|||.|+. .++.|++++.
T Consensus 50 l~~l~~~d~iifTS~n-------aV~~~~~~l~ 75 (255)
T PRK05752 50 LLELDRYCAVIVVSKP-------AARLGLELLD 75 (255)
T ss_pred HhcCCCCCEEEEECHH-------HHHHHHHHHH
Confidence 3567899999999974 4666776654
No 240
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=29.87 E-value=90 Score=27.11 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=30.0
Q ss_pred eEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 48 KIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 48 kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|||++..+. .|-.+..+..+++.+.+ .|.+++++....
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~ 39 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVA-KGHQVAIISLTG 39 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhccc-CCceEEEEEEeC
Confidence 578777653 57788889999999988 799999887643
No 241
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=29.67 E-value=86 Score=31.13 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=28.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCce-EEEEEC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVE-GVLYRV 84 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~e-v~l~~l 84 (252)
.+||+++++|..|.+..+...+.+.+++ .+.+ +++.+.
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~l~~-~~i~~i~i~~~ 416 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKKVQD-AGLSQISVTNS 416 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHHHHH-cCCCeeEEEEe
Confidence 4689999999999998888888888876 4543 555543
No 242
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.60 E-value=1.6e+02 Score=24.10 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=28.3
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
|+||-+ ..||...+++++. . .|++++++ .+ .+++.++|+||+..|
T Consensus 2 i~vid~-g~gn~~~~~~~l~----~-~g~~v~~~--~~-----------------------~~~l~~~d~lilpG~ 46 (199)
T PRK13181 2 IAIIDY-GAGNLRSVANALK----R-LGVEAVVS--SD-----------------------PEEIAGADKVILPGV 46 (199)
T ss_pred EEEEeC-CCChHHHHHHHHH----H-CCCcEEEE--cC-----------------------hHHhccCCEEEECCC
Confidence 555543 3577777776553 3 56777665 21 345678999999664
No 243
>PRK15005 universal stress protein F; Provisional
Probab=29.52 E-value=1e+02 Score=23.18 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=27.7
Q ss_pred CceEEEEE-eCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIF-YSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy-~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+++||+-+ +|....++++++...+-++. .++++.++.+-+
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~-~~~~l~ll~v~~ 42 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKI-DDAEVHFLTVIP 42 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhc-cCCeEEEEEEEc
Confidence 46788776 56666566777766666655 677888888764
No 244
>PRK10307 putative glycosyl transferase; Provisional
Probab=29.46 E-value=69 Score=29.20 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=28.7
Q ss_pred ceEEEEE--eCC-chhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 47 LKIFIIF--YSM-YGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 47 ~kIlIIy--~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|||++|. +.+ .|.++.....+++.+.+ .|.+|+++...
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~-~G~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAA-RGHEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHH-CCCeEEEEecC
Confidence 6899887 344 36566677788888888 89999998754
No 245
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=29.46 E-value=55 Score=24.98 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=24.2
Q ss_pred CchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 56 MYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 56 ~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
..|-.++.+..+++.+.+ .|.+++++....
T Consensus 10 ~~GG~e~~~~~l~~~l~~-~G~~v~v~~~~~ 39 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAK-RGHEVTVVSPGV 39 (177)
T ss_dssp SSSHHHHHHHHHHHHHHH-TT-EEEEEESS-
T ss_pred CCChHHHHHHHHHHHHHH-CCCEEEEEEcCC
Confidence 468889999999999998 899999996654
No 246
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=29.42 E-value=74 Score=27.75 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=30.2
Q ss_pred eEEEEEe----CCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 48 KIFIIFY----SMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 48 kIlIIy~----S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
||+||-. ...|-++..+..+++.+.+ .|.+|+++....
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~-~g~~v~v~~~~~ 42 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVA-RGHEVTVYCRSP 42 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHh-cCCCEEEEEccC
Confidence 6777732 2368899999999999998 899999987654
No 247
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.38 E-value=96 Score=27.33 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=29.2
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEE
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYR 83 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~ 83 (252)
|||.|++-.....+..+++.|.+-+++ .|+++.+..
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~ 36 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDS 36 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 688888877677888899999998887 788877753
No 248
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=29.26 E-value=92 Score=25.95 Aligned_cols=72 Identities=11% Similarity=0.185 Sum_probs=42.5
Q ss_pred ccccCCCCCCCCCCCCCCccccccc---cCCC-CCCCCceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 13 KFAIDMPEQDPSNPDGVSSNLDQNQ---LTTT-STTGQLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
...+|.|-+.|..-|.+...-++.. +... .+....+.+++||.+ +|.|. +|.+++..+.. .|..+..++..+
T Consensus 4 ql~~~~~~~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~-La~ai~~~~~~-~~~~~~~i~~~~ 80 (227)
T PRK08903 4 QLTLDLGPPPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSH-LLQALVADASY-GGRNARYLDAAS 80 (227)
T ss_pred ccccCCCCCChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHH-HHHHHHHHHHh-CCCcEEEEehHH
Confidence 3466788888777666542221111 1111 122334678889875 79886 77777777654 566677777654
No 249
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=29.21 E-value=1e+02 Score=23.98 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=29.2
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.++++.|-|...+..|+.+.+-+++ .|..+++..+.+
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~-~g~~v~~~~i~~ 60 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEE-KGINVEVVEIEG 60 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHH-TT-EEEEEE---
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeee
Confidence 6888899999999999999999988 788888877665
No 250
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=29.11 E-value=1.6e+02 Score=22.67 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=32.5
Q ss_pred eEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCc
Q 040588 118 GLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGM 184 (252)
Q Consensus 118 ~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~ 184 (252)
.||+|.+.+....++.++.=++.-..++. ++..--++.|+|...+....-...+.+.+...|.
T Consensus 3 IvVLG~~~~~~~~~~~~~~R~~~a~~l~~----~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv 65 (150)
T cd06259 3 IVVLGGGVNGDGPSPILAERLDAAAELYR----AGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGV 65 (150)
T ss_pred EEEeCCccCCCCCChHHHHHHHHHHHHHH----hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCC
Confidence 57899999877666544444444333322 2333334555554332111123456666666664
No 251
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=28.91 E-value=11 Score=35.05 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=56.7
Q ss_pred CCCCCCCCcCccccccCCCCCCCCCCCC----CCccccccc-----cCCCCCCCCceEEEEEe-CCchhHH----HHHHH
Q 040588 1 MGKGGGCFPSKKKFAIDMPEQDPSNPDG----VSSNLDQNQ-----LTTTSTTGQLKIFIIFY-SMYGHVE----ILARR 66 (252)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~~~~kIlIIy~-S~~GnT~----~la~~ 66 (252)
.|-||.|||..-+--+---++-|-.+.= +.+|-.|-. +.+..+ -.-|.+.||+ +..-||. .-+-.
T Consensus 256 ~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~~~~~~i~~~~~-l~Gk~iavlgLafKpnTDD~ReSpa~~ 334 (414)
T COG1004 256 FGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRKDKLAEKILNHLG-LKGKTIAVLGLAFKPNTDDMRESPALD 334 (414)
T ss_pred CCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcEEEEEEEeecCCCccchhchHHH
Confidence 4789999998765444333443333322 233333321 223333 2224444453 4333433 23455
Q ss_pred HHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 67 MKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 67 i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
|.+.|.+ .|++|..++-.-.. .......-.. -.... .+.+..+|+||+.+-
T Consensus 335 vi~~L~~-~Ga~V~aYDP~a~~--~~~~~~~~~~---~~~~~-~~~~~~aDaivi~te 385 (414)
T COG1004 335 IIKRLQE-KGAEVIAYDPVAME--NAFRNFPDVE---LESDA-EEALKGADAIVINTE 385 (414)
T ss_pred HHHHHHH-CCCEEEEECchhhH--HHHhcCCCce---EeCCH-HHHHhhCCEEEEecc
Confidence 6777777 89999888743221 0000000000 00111 345677999999874
No 252
>PRK08181 transposase; Validated
Probab=28.89 E-value=51 Score=28.93 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=39.3
Q ss_pred eEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 48 KIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 48 kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
+-++++|.+ +|.|. +|.+|+..+.+ .|..|..+...+... .+... ..+...... ...+..+|.|||-=.
T Consensus 107 ~nlll~Gp~GtGKTH-La~Aia~~a~~-~g~~v~f~~~~~L~~--~l~~a---~~~~~~~~~-l~~l~~~dLLIIDDl 176 (269)
T PRK08181 107 ANLLLFGPPGGGKSH-LAAAIGLALIE-NGWRVLFTRTTDLVQ--KLQVA---RRELQLESA-IAKLDKFDLLILDDL 176 (269)
T ss_pred ceEEEEecCCCcHHH-HHHHHHHHHHH-cCCceeeeeHHHHHH--HHHHH---HhCCcHHHH-HHHHhcCCEEEEecc
Confidence 447778775 89986 67777777765 677777666644210 00000 000111122 466788999996543
No 253
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=28.40 E-value=3.9e+02 Score=23.10 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=49.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceE-EEEECCCCCCHHHHhcccCCCCCCCCcccchhhhh--ccCeEEEe
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEG-VLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLV--HADGLLFG 122 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev-~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~--~aD~II~g 122 (252)
..||.|||.. +...+.+++.+.+.+++ .|.++ ..+.+.... .++..+ ...+. ..|.|++.
T Consensus 135 ~~~v~iv~~~-~~~g~~~~~~~~~~~~~-~G~~vv~~~~~~~~~--------------~d~~~~-~~~l~~~~~d~v~~~ 197 (343)
T PF13458_consen 135 AKKVAIVYPD-DPYGRSLAEAFRKALEA-AGGKVVGEIRYPPGD--------------TDFSAL-VQQLKSAGPDVVVLA 197 (343)
T ss_dssp TSEEEEEEES-SHHHHHHHHHHHHHHHH-TTCEEEEEEEE-TTS--------------SHHHHH-HHHHHHTTTSEEEEE
T ss_pred CcEEEEEecC-chhhhHHHHHHHHHHhh-cCceeccceeccccc--------------ccchHH-HHHHhhcCCCEEEEe
Confidence 4688888854 65667888999999988 78774 233333211 111111 34443 58887665
Q ss_pred ccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 123 FPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 123 sP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
+. ++.+..|+..+... .+..+.+.++.+
T Consensus 198 ~~------~~~~~~~~~~~~~~----~~~~~~~~~~~~ 225 (343)
T PF13458_consen 198 GD------PADAAAFLRQLRQL----GLKPPRIPLFGT 225 (343)
T ss_dssp ST------HHHHHHHHHHHHHT----TGCSCTEEEEEG
T ss_pred cc------chhHHHHHHHHHhh----ccccccceeecc
Confidence 53 34455555555421 345554555544
No 254
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=28.29 E-value=3.3e+02 Score=23.82 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=17.6
Q ss_pred hhhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 112 DLVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 112 ~l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
.+.++|.||+..|.+ .+..+++.+.
T Consensus 68 ~~~~~D~vi~~v~~~------~~~~v~~~l~ 92 (325)
T PRK00094 68 ALADADLILVAVPSQ------ALREVLKQLK 92 (325)
T ss_pred HHhCCCEEEEeCCHH------HHHHHHHHHH
Confidence 456899999999974 3555555543
No 255
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=28.28 E-value=1.4e+02 Score=24.47 Aligned_cols=69 Identities=14% Similarity=-0.013 Sum_probs=35.9
Q ss_pred ceEEEEEeC--C-ch-------hHHHHHHHHHHhcccc----CCceEEEEECCCCCCHHHHhcccCCCCCCCCccc--ch
Q 040588 47 LKIFIIFYS--M-YG-------HVEILARRMKKGVDSI----DGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVI--AV 110 (252)
Q Consensus 47 ~kIlIIy~S--~-~G-------nT~~la~~i~~~l~~~----~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~--~~ 110 (252)
.||-|+-.| + .| .|..+++.+++.+++. .|-+|+++-.....-. ..+. ..
T Consensus 4 pkIGIrp~iDGR~~gVresLe~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Igg--------------v~eAa~~a 69 (171)
T PF07881_consen 4 PKIGIRPTIDGRRGGVRESLEEQTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGG--------------VAEAAACA 69 (171)
T ss_dssp -EEEEEEB----TTTHHHHHHHHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-S--------------HHHHHHHH
T ss_pred CeEEEEEeecCCchhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccC--------------HHHHHHHH
Confidence 467777777 2 33 7888888888888761 3667777765543100 0000 02
Q ss_pred hhh--hccCeEEEeccccCCC
Q 040588 111 DDL--VHADGLLFGFPTRFGS 129 (252)
Q Consensus 111 ~~l--~~aD~II~gsP~y~g~ 129 (252)
+++ ...++.|+.+|+|.+.
T Consensus 70 e~f~~~~V~~titvtpcWcy~ 90 (171)
T PF07881_consen 70 EKFKREGVGVTITVTPCWCYG 90 (171)
T ss_dssp HHHHCCTEEEEEEEESS---H
T ss_pred HHHHHcCCCEEEEEEeeeecc
Confidence 333 4578899999999654
No 256
>PRK06217 hypothetical protein; Validated
Probab=28.28 E-value=63 Score=26.08 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=20.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhcc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVD 72 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~ 72 (252)
||||+|+=.|..|.|. +++.+++.+.
T Consensus 1 ~~~I~i~G~~GsGKST-la~~L~~~l~ 26 (183)
T PRK06217 1 MMRIHITGASGSGTTT-LGAALAERLD 26 (183)
T ss_pred CeEEEEECCCCCCHHH-HHHHHHHHcC
Confidence 6788888888889884 8888888764
No 257
>PRK06851 hypothetical protein; Provisional
Probab=28.12 E-value=1.5e+02 Score=27.36 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=37.5
Q ss_pred CCCCCCccccccccCCCCCCCCceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 25 NPDGVSSNLDQNQLTTTSTTGQLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
.+.|.-|.++++. ....++.||.+.+ +|.|. +++.|.+.+.+ .|.+|+.+...
T Consensus 14 T~~Gf~s~~~~~~------~~~~~~~il~G~pGtGKSt-l~~~i~~~~~~-~g~~Ve~~~~~ 67 (367)
T PRK06851 14 TARGFYSLYDSII------DGANRIFILKGGPGTGKST-LMKKIGEEFLE-KGYDVEFLHCS 67 (367)
T ss_pred CCCchhhhhhhhc------cccceEEEEECCCCCCHHH-HHHHHHHHHHH-cCCeEEEEEcC
Confidence 4677777777643 1256899999886 67775 55677777766 68888877654
No 258
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=28.02 E-value=68 Score=25.16 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=18.9
Q ss_pred CCceEEEEEeCCchhH--HHHHHHHHHhccc
Q 040588 45 GQLKIFIIFYSMYGHV--EILARRMKKGVDS 73 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT--~~la~~i~~~l~~ 73 (252)
+|+|||.|+ +||+ ..||+.+++.+..
T Consensus 1 ~~~kVLFVC---~gN~cRSpmAE~l~~~~~~ 28 (139)
T COG0394 1 MMMKVLFVC---TGNICRSPMAEALLRHLAP 28 (139)
T ss_pred CCceEEEEc---CCCcccCHHHHHHHHHhcc
Confidence 368999988 4443 4699999888754
No 259
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=27.92 E-value=3.3e+02 Score=22.10 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=31.9
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
..+.++|++||..-+-.-.-...++.|++.+.. ...+-++.++++
T Consensus 74 ~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~-----~~~~~piilVGN 118 (189)
T cd04121 74 SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE-----HAPGVPKILVGN 118 (189)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEE
Confidence 345799999999888776666677888888753 224556666665
No 260
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=27.76 E-value=1.6e+02 Score=24.74 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=36.5
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCc-eEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGV-EGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~-ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
....||++|-.. .+..+..++.+.+.+++ .|+ +++.+.+.+.. ..+-+++ .+.+.++|+|+|+
T Consensus 27 ~~~~~i~~iptA-~~~~~~~~~~~~~~~~~-lG~~~v~~~~~~~~~-------------~a~~~~~-~~~l~~ad~I~~~ 90 (217)
T cd03145 27 GAGARIVVIPAA-SEEPAEVGEEYRDVFER-LGAREVEVLVIDSRE-------------AANDPEV-VARLRDADGIFFT 90 (217)
T ss_pred CCCCcEEEEeCC-CcChhHHHHHHHHHHHH-cCCceeEEeccCChH-------------HcCCHHH-HHHHHhCCEEEEe
Confidence 344678766532 22245556666666666 576 46666665310 0011222 5679999999998
Q ss_pred c
Q 040588 123 F 123 (252)
Q Consensus 123 s 123 (252)
.
T Consensus 91 G 91 (217)
T cd03145 91 G 91 (217)
T ss_pred C
Confidence 4
No 261
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=27.74 E-value=1.1e+02 Score=27.93 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=22.6
Q ss_pred ceEEEEE-eCCchhHHHHHHHHHHhccccCCceEEEEECCCCCC
Q 040588 47 LKIFIIF-YSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLP 89 (252)
Q Consensus 47 ~kIlIIy-~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p 89 (252)
.+++||. +|..+ .+..+++.+++ .|+++.++++....|
T Consensus 247 ad~~iva~Gs~~~----~a~eA~~~L~~-~Gi~v~vi~~~~l~P 285 (352)
T PRK07119 247 AELVLVAYGTSAR----IAKSAVDMARE-EGIKVGLFRPITLWP 285 (352)
T ss_pred CCEEEEEcCccHH----HHHHHHHHHHH-cCCeEEEEeeceecC
Confidence 3455544 44444 44455555555 688889999876543
No 262
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=27.47 E-value=2.7e+02 Score=21.03 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=26.3
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
..+..+|++|+..-.-...-...+..|+..+.. ...+.++.++++
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~-----~~~~~p~iiv~n 114 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEA-----ECGDIPMVLVQT 114 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEE
Confidence 456789999988765443333444555554431 234567666665
No 263
>PRK08084 DNA replication initiation factor; Provisional
Probab=27.20 E-value=76 Score=26.95 Aligned_cols=37 Identities=8% Similarity=0.037 Sum_probs=26.5
Q ss_pred eEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 48 KIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 48 kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
..+++||.+ .|.|. ++.+++..+.+ .|..+..+.+.+
T Consensus 46 ~~l~l~Gp~G~GKTh-Ll~a~~~~~~~-~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSH-LLHAACAELSQ-RGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHh-CCCeEEEEEHHH
Confidence 478889875 79986 66677776665 576777777654
No 264
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=27.17 E-value=1.3e+02 Score=28.70 Aligned_cols=40 Identities=3% Similarity=0.026 Sum_probs=26.3
Q ss_pred CCceEEEEEe--CCchhHHHHH-HHHHHhccccCCceEEEEECC
Q 040588 45 GQLKIFIIFY--SMYGHVEILA-RRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 45 ~~~kIlIIy~--S~~GnT~~la-~~i~~~l~~~~G~ev~l~~l~ 85 (252)
.++|+++|+- |..|+..++. +.+...+++ .|++++++.-.
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~ 152 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETK 152 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEecc
Confidence 4678888774 4456666664 456667777 78887766544
No 265
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=27.01 E-value=94 Score=25.12 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=20.6
Q ss_pred CCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE-eccc
Q 040588 75 DGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF-GFPT 125 (252)
Q Consensus 75 ~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~-gsP~ 125 (252)
.|++++++...... + ...++.++|+||+ |.|-
T Consensus 21 ~G~~~~~~~~~~~~------------------~-~~~~~~~~dgvil~gG~~ 53 (184)
T cd01743 21 LGAEVVVVRNDEIT------------------L-EELELLNPDAIVISPGPG 53 (184)
T ss_pred cCCceEEEeCCCCC------------------H-HHHhhcCCCEEEECCCCC
Confidence 57788888875431 0 1235678999877 6663
No 266
>PRK06835 DNA replication protein DnaC; Validated
Probab=26.99 E-value=2.4e+02 Score=25.57 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=40.4
Q ss_pred eEEEEEeC-CchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 48 KIFIIFYS-MYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 48 kIlIIy~S-~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
+-+++||. .+|-|. ||.+|+..+.. .|..|..+...+... .+.... .....+.... ...+.++|.|||=
T Consensus 184 ~~Lll~G~~GtGKTh-La~aIa~~l~~-~g~~V~y~t~~~l~~--~l~~~~-~~~~~~~~~~-~~~l~~~DLLIID 253 (329)
T PRK06835 184 ENLLFYGNTGTGKTF-LSNCIAKELLD-RGKSVIYRTADELIE--ILREIR-FNNDKELEEV-YDLLINCDLLIID 253 (329)
T ss_pred CcEEEECCCCCcHHH-HHHHHHHHHHH-CCCeEEEEEHHHHHH--HHHHHH-hccchhHHHH-HHHhccCCEEEEe
Confidence 56888886 489997 77788887766 687777777655311 010000 0000111111 4677899999985
No 267
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=26.77 E-value=3.7e+02 Score=23.20 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=30.7
Q ss_pred eEEEEEeC-CchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 48 KIFIIFYS-MYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 48 kIlIIy~S-~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
||+++..+ ..|-.+..+..+++.+.+ .|.+++++.....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~-~~~~v~~i~~~~~ 40 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDR-SKIQFDFLVTSKE 40 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCc-cceEEEEEEeCCC
Confidence 67877766 367778888899999987 7899998887653
No 268
>PRK08818 prephenate dehydrogenase; Provisional
Probab=26.76 E-value=1.1e+02 Score=28.26 Aligned_cols=16 Identities=44% Similarity=0.553 Sum_probs=13.7
Q ss_pred hhhhccCeEEEecccc
Q 040588 111 DDLVHADGLLFGFPTR 126 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y 126 (252)
+.+.++|.||+++|+.
T Consensus 47 ~~v~~aDlVilavPv~ 62 (370)
T PRK08818 47 TLLQRADVLIFSAPIR 62 (370)
T ss_pred HHhcCCCEEEEeCCHH
Confidence 4578999999999984
No 269
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=26.74 E-value=1.8e+02 Score=29.02 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=19.8
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhhh
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFH 143 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~ 143 (252)
...+.+||.|||.||. .++.|++.+..
T Consensus 50 l~~L~~yd~iIFTS~n-------AV~~~~~~l~~ 76 (656)
T PRK06975 50 LARLSDYALVVFVSPN-------AVDRALARLDA 76 (656)
T ss_pred HHhCCCCCEEEEECHH-------HHHHHHHHHHh
Confidence 3567899999999975 46667766543
No 270
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=26.67 E-value=1.7e+02 Score=22.07 Aligned_cols=41 Identities=7% Similarity=0.150 Sum_probs=24.2
Q ss_pred CCceEEEEEeCCchh---HHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 45 GQLKIFIIFYSMYGH---VEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 45 ~~~kIlIIy~S~~Gn---T~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
...+|||+|.+.... .-++...+++.+.- .| .+-.++..+.
T Consensus 18 Tr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG-~g-T~~~vdCgd~ 61 (112)
T cd03067 18 TRNNVLVLYSKSAKSAEALLKLLSDVAQAVKG-QG-TIAWIDCGDS 61 (112)
T ss_pred hcCcEEEEEecchhhHHHHHHHHHHHHHHhcC-ce-eEEEEecCCh
Confidence 356899999875433 34445555555543 22 4567777763
No 271
>PRK07952 DNA replication protein DnaC; Validated
Probab=26.63 E-value=2.3e+02 Score=24.41 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=41.6
Q ss_pred eEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 48 KIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 48 kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
+.+++++.+ +|.|. ++.+|+..+.. .|..+-++.+.+... .+..... ..+.....+ ...+..+|.|||=-.-
T Consensus 100 ~~~~l~G~~GtGKTh-La~aia~~l~~-~g~~v~~it~~~l~~-~l~~~~~--~~~~~~~~~-l~~l~~~dlLvIDDig 172 (244)
T PRK07952 100 ASFIFSGKPGTGKNH-LAAAICNELLL-RGKSVLIITVADIMS-AMKDTFS--NSETSEEQL-LNDLSNVDLLVIDEIG 172 (244)
T ss_pred ceEEEECCCCCCHHH-HHHHHHHHHHh-cCCeEEEEEHHHHHH-HHHHHHh--hccccHHHH-HHHhccCCEEEEeCCC
Confidence 467888864 89986 66677777766 677887777655311 0000000 000011122 5667899999987543
No 272
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.60 E-value=4.1e+02 Score=23.80 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=35.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
..+.++|..+..--+...++...+.+++ .|++++++++.+..
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 72 (297)
T PRK14167 31 TPGLATVLMSDDPASETYVSMKQRDCEE-VGIEAIDVEIDPDA 72 (297)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 3578888888777788889999999988 89999999998753
No 273
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.54 E-value=4.6e+02 Score=23.29 Aligned_cols=41 Identities=17% Similarity=0.398 Sum_probs=34.0
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
.+.++|.....--+...++...+.+++ .|++++++++.+..
T Consensus 31 P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 71 (282)
T PRK14169 31 PTLAVVLVGSDPASEVYVRNKQRRAED-IGVRSLMFRLPEAT 71 (282)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 467788877777778888999999988 89999999998753
No 274
>PRK14098 glycogen synthase; Provisional
Probab=26.41 E-value=1.1e+02 Score=29.04 Aligned_cols=41 Identities=7% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCCCceEEEEEe-----CCchhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 43 TTGQLKIFIIFY-----SMYGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 43 ~~~~~kIlIIy~-----S~~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
+..|||||.|-. +.+|.-.-++..+-+.+.+ .|++|+++--
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~-~g~~v~v~~P 47 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEE-EGFEARIMMP 47 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHH-CCCeEEEEcC
Confidence 456699987762 3478777788889999988 8999987654
No 275
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=26.32 E-value=95 Score=26.13 Aligned_cols=41 Identities=7% Similarity=0.040 Sum_probs=26.1
Q ss_pred hhccCeEEEec---cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 113 LVHADGLLFGF---PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 113 l~~aD~II~gs---P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
+.+||+|||.. +.|...-...+..|+.++.. ++|+++.+++
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~-------~~k~iaaIC~ 131 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYE-------NGKVVAAVCH 131 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHH-------cCCEEEEEcc
Confidence 46899998874 34444455677888876542 4566655554
No 276
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=26.28 E-value=1.8e+02 Score=20.73 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 63 LARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 63 la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
.++.+.+..++ .|.++.+- ..... .--+.++.+++..+|.||+..-+
T Consensus 2 AAeaL~~aA~~-~G~~i~VE-tqg~~--------------g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 2 AAEALESAAKA-KGWEVKVE-TQGSI--------------GLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHHH-CCCeEEEE-ecCCc--------------CcCCCCCHHHHHhCCEEEEEecC
Confidence 35666666666 77776542 22210 00112346889999999998554
No 277
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=26.26 E-value=96 Score=26.88 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=30.6
Q ss_pred eEEEEE--eCC-chhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 48 KIFIIF--YSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 48 kIlIIy--~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
|||+|. +++ .|..+.++..+++.+.+ .|.+++++.....
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 42 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAA-RGIEVAVLCASPE 42 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHh-CCCceEEEecCCC
Confidence 577775 445 67778888999999988 7999999887654
No 278
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.14 E-value=2e+02 Score=21.12 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=25.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEE
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYR 83 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~ 83 (252)
.+-++|..|..|+|+.+.+.+. .+++ .|+.+-.+.
T Consensus 53 ~~d~vi~is~sg~~~~~~~~~~-~ak~-~g~~vi~iT 87 (131)
T PF01380_consen 53 PDDLVIIISYSGETRELIELLR-FAKE-RGAPVILIT 87 (131)
T ss_dssp TTEEEEEEESSSTTHHHHHHHH-HHHH-TTSEEEEEE
T ss_pred ccceeEeeeccccchhhhhhhH-HHHh-cCCeEEEEe
Confidence 3466677789999999998887 6666 677764444
No 279
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=26.00 E-value=1.7e+02 Score=23.08 Aligned_cols=38 Identities=21% Similarity=0.095 Sum_probs=29.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
.+|..||.+|.+-.--..|-.|+.++.+ .|.||.++.-
T Consensus 2 ~~k~~IIl~SG~~dk~~~a~iias~A~A-~G~EV~VF~T 39 (137)
T COG2210 2 DKKLGIILASGTLDKAYAALIIASGAAA-MGYEVTVFFT 39 (137)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEe
Confidence 4688899999776655566677778777 8999988764
No 280
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=26.00 E-value=2.9e+02 Score=21.35 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=28.8
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
...+..+|++||....-...--..+..|+..+... ..++.++.++++
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pvivv~n 117 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SNSNMTIMLIGN 117 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEE
Confidence 34567899999987765433334566666655421 234667777766
No 281
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=25.95 E-value=1.1e+02 Score=24.81 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=14.9
Q ss_pred hhhhhccCeEEEeccccC
Q 040588 110 VDDLVHADGLLFGFPTRF 127 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~ 127 (252)
.+.+.+||.||.+++.=.
T Consensus 82 ~~~l~~aDiVIsat~~~~ 99 (168)
T cd01080 82 KEHTKQADIVIVAVGKPG 99 (168)
T ss_pred HHHHhhCCEEEEcCCCCc
Confidence 567899999999998743
No 282
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=25.86 E-value=4.4e+02 Score=22.89 Aligned_cols=60 Identities=25% Similarity=0.292 Sum_probs=33.3
Q ss_pred hhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEE-ecCCc
Q 040588 113 LVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVY-VPIGY 191 (252)
Q Consensus 113 l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~v-v~~~~ 191 (252)
+.+.|+||+.+|... ...+..... -.||.+.+. +.+. . .....+.+.....|..+ ++.++
T Consensus 65 l~~~D~Vvi~tp~~~------h~e~~~~aL-------~aGk~Vi~~-s~ga----l-~~~~~L~~~A~~~g~~l~v~sGa 125 (271)
T PRK13302 65 ATHADIVVEAAPASV------LRAIVEPVL-------AAGKKAIVL-SVGA----L-LRNEDLIDLARQNGGQIIVPTGA 125 (271)
T ss_pred hcCCCEEEECCCcHH------HHHHHHHHH-------HcCCcEEEe-cchh----H-HhHHHHHHHHHHcCCEEEEcchH
Confidence 457899999999742 222222211 156766433 2221 1 12456777777888866 55444
No 283
>PRK14866 hypothetical protein; Provisional
Probab=25.80 E-value=1.8e+02 Score=27.65 Aligned_cols=25 Identities=8% Similarity=-0.002 Sum_probs=19.3
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGV 71 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l 71 (252)
|+++||+....--+.-|++.|.+-+
T Consensus 1 m~~~iv~S~~DpAS~ni~~~L~~l~ 25 (451)
T PRK14866 1 MMIAIVVSRADPASVHIREHLLELL 25 (451)
T ss_pred CeEEEEEeCCCchhhhHHHHHHHhc
Confidence 4688889777777777888888844
No 284
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.77 E-value=4.5e+02 Score=23.53 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=33.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
..+.++|.....-.+...++...+.+++ .|++++++++.+.
T Consensus 32 ~p~LaiI~vgdd~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (297)
T PRK14186 32 PPGLAVLRVGDDPASAVYVRNKEKACAR-VGIASFGKHLPAD 72 (297)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 3577888877777778888999999988 8999999999765
No 285
>PRK11249 katE hydroperoxidase II; Provisional
Probab=25.41 E-value=5.7e+02 Score=26.15 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=31.2
Q ss_pred CccccccccCCCCCC-CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 30 SSNLDQNQLTTTSTT-GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 30 ~~~~~~~~~~~~~~~-~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|..|.| +.+..+. ..+||.|+-+. |....-+..+.+.+.+ .|++++++...
T Consensus 582 s~als~--~~~~~~~~~gRKIaILVaD--G~d~~ev~~~~daL~~-AGa~V~VVSp~ 633 (752)
T PRK11249 582 DPALSL--YAIPDGDIKGRKVAILLND--GVDAADLLAILKALKA-KGVHAKLLYPR 633 (752)
T ss_pred Ccchhc--cCCCCCCccccEEEEEecC--CCCHHHHHHHHHHHHH-CCCEEEEEECC
Confidence 555654 3332222 34688877743 4444555567777777 78888888754
No 286
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=25.39 E-value=2.4e+02 Score=22.56 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=24.9
Q ss_pred hhccCeEEEeccccCCC--ch-HHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 113 LVHADGLLFGFPTRFGS--MA-SQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 113 l~~aD~II~gsP~y~g~--~~-~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
..+||+|++-.-.++-. .+ ..+..|+.++.. .||+++.++.
T Consensus 64 ~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~-------~~k~vaaIC~ 107 (188)
T COG0693 64 AADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYA-------NGKPVAAICH 107 (188)
T ss_pred HhHCCEEEECCCccchhhccCcHHHHHHHHHHHH-------cCCEEEEECh
Confidence 46999999876533211 11 556666666532 4777776665
No 287
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=25.36 E-value=2.3e+02 Score=23.19 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=16.7
Q ss_pred EEEEEeC--CchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 49 IFIIFYS--MYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 49 IlIIy~S--~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
-+||+-| +-|.|+.++..+++.... .+.++.+....+
T Consensus 114 ~lvV~~STvppGtt~~~~~~ile~~~~-~~~~f~la~~PE 152 (185)
T PF03721_consen 114 DLVVIESTVPPGTTEELLKPILEKRSG-KKEDFHLAYSPE 152 (185)
T ss_dssp EEEEESSSSSTTHHHHHHHHHHHHHCC-TTTCEEEEE---
T ss_pred ceEEEccEEEEeeehHhhhhhhhhhcc-cccCCeEEECCC
Confidence 3444444 246666566555555543 223444444433
No 288
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=25.24 E-value=85 Score=26.83 Aligned_cols=42 Identities=5% Similarity=-0.104 Sum_probs=26.6
Q ss_pred hhhccCeEEEec---cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 112 DLVHADGLLFGF---PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 112 ~l~~aD~II~gs---P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
+..+||+|+|-. |.+...-...++.++.++.. .||++++++.
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~-------~gK~iaAICh 135 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYA-------NGGVVAAVCH 135 (231)
T ss_pred CHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHH-------cCCEEEEECh
Confidence 467899998864 44544446667777776542 4566665554
No 289
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=25.22 E-value=71 Score=25.03 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 040588 228 ALAEHQGKYMAAIVKK 243 (252)
Q Consensus 228 ~~a~~~g~~la~~~~~ 243 (252)
+.|.+||+|||++++-
T Consensus 109 ADa~EFGERiaELAKi 124 (151)
T PF06554_consen 109 ADAQEFGERIAELAKI 124 (151)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4578999999999873
No 290
>PLN00223 ADP-ribosylation factor; Provisional
Probab=25.22 E-value=3.5e+02 Score=21.52 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=16.6
Q ss_pred CCCceEEEEEeCCchhHHHHHHHH
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRM 67 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i 67 (252)
+...||+++=.+..|.|..+.+..
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~ 38 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHc
Confidence 334578888778889987665443
No 291
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=25.18 E-value=1.8e+02 Score=26.67 Aligned_cols=41 Identities=27% Similarity=0.134 Sum_probs=34.1
Q ss_pred ceEEEEEeCCch-hHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 47 LKIFIIFYSMYG-HVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 47 ~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
.++-||-+|..| +...+++.+.+.+.+ .|.++-++-+.+..
T Consensus 238 ~~~giiv~tk~gQ~r~~~~~~l~k~~~~-~g~~~~li~~~~i~ 279 (347)
T COG1736 238 KSFGIIVSTKGGQRRLEVARELVKLLKE-AGKEVYLIVVDEIS 279 (347)
T ss_pred CeEEEEEecccccCcHHHHHHHHHHHHH-cCCceEEEEecCCC
Confidence 478899999766 578899999999998 88898888887653
No 292
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=25.05 E-value=86 Score=26.83 Aligned_cols=30 Identities=3% Similarity=-0.204 Sum_probs=20.1
Q ss_pred hhccCeEEEec---cccCCCchHHHHHHHHhhh
Q 040588 113 LVHADGLLFGF---PTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 113 l~~aD~II~gs---P~y~g~~~~~~k~fld~l~ 142 (252)
..+||+|++-. |.|...-...+..++.++.
T Consensus 94 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~ 126 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWAI 126 (232)
T ss_pred hhhceEEEECCCCCChhhcccCHHHHHHHHHHH
Confidence 46899998864 4555555566777776653
No 293
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.04 E-value=4.9e+02 Score=23.13 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=34.3
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
..+.++|......-+...++...+.+++ .|++++++++.+..
T Consensus 33 ~P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 74 (285)
T PRK10792 33 APGLAVVLVGSDPASQVYVASKRKACEE-VGFVSRSYDLPETT 74 (285)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 3577788777777788889999999988 89999999998653
No 294
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=25.04 E-value=4.3e+02 Score=22.44 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=12.3
Q ss_pred hhhccCeEEEecccc
Q 040588 112 DLVHADGLLFGFPTR 126 (252)
Q Consensus 112 ~l~~aD~II~gsP~y 126 (252)
.+.++|.||+++|.+
T Consensus 59 ~~~~advVil~v~~~ 73 (267)
T PRK11880 59 AAQEADVVVLAVKPQ 73 (267)
T ss_pred HHhcCCEEEEEcCHH
Confidence 357899999999865
No 295
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=25.03 E-value=4.8e+02 Score=26.09 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=44.5
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRF 127 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~ 127 (252)
+++||- +|+.-..|..+++.|++ .|+++++++++...|. |...+ .........||..==-.-
T Consensus 546 dvtIva---~G~~v~~Al~AA~~L~~-~GI~v~VId~rsikPl-------------D~~~i-~sl~k~~~~vVt~Ee~~~ 607 (641)
T PLN02234 546 RVALLG---YGSAVQRCLEAASMLSE-RGLKITVADARFCKPL-------------DVALI-RSLAKSHEVLITVEEGSI 607 (641)
T ss_pred CEEEEE---ecHHHHHHHHHHHHHHh-cCCCEEEEecCCcCCC-------------CHHHH-HHHHHhCCEEEEECCCCC
Confidence 565554 45555556666666666 6899999999865441 11111 223344555554422223
Q ss_pred CCchHHHHHHHHh
Q 040588 128 GSMASQMKAFFDS 140 (252)
Q Consensus 128 g~~~~~~k~fld~ 140 (252)
|++.+.+..++..
T Consensus 608 GG~Gs~Va~~l~e 620 (641)
T PLN02234 608 GGFGSHVVQFLAL 620 (641)
T ss_pred CcHHHHHHHHHHH
Confidence 8888888888865
No 296
>PRK05665 amidotransferase; Provisional
Probab=24.91 E-value=4.4e+02 Score=22.54 Aligned_cols=14 Identities=21% Similarity=0.062 Sum_probs=9.7
Q ss_pred hhhccCeEEEe-ccc
Q 040588 112 DLVHADGLLFG-FPT 125 (252)
Q Consensus 112 ~l~~aD~II~g-sP~ 125 (252)
++.++|+||+. +|-
T Consensus 54 ~~~~~dgiiitGs~~ 68 (240)
T PRK05665 54 DDEKFDAYLVTGSKA 68 (240)
T ss_pred CcccCCEEEECCCCC
Confidence 46679998775 553
No 297
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=24.88 E-value=4e+02 Score=22.05 Aligned_cols=108 Identities=9% Similarity=0.016 Sum_probs=50.9
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhcccc----CCceEEEEECC--CCC-CHHHHhcccCCCCCCCCcccchhhhhcc
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSI----DGVEGVLYRVP--ETL-PAEVLEQMKVPQKGIEVPVIAVDDLVHA 116 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~----~G~ev~l~~l~--~~~-p~~~~~~~~~~~~~d~~~~~~~~~l~~a 116 (252)
+...||+++=.+..|-|..+-+.+.....+. .|.++....+. ... ....+. +. ....+..+....+..+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~D---t~-G~~~~~~~~~~~~~~~ 86 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD---TA-GQEKFGGLRDGYYIHG 86 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEE---CC-CchhhhhhhHHHcccc
Confidence 4446888887778999987766554444320 12222222211 000 000000 00 0011111212346788
Q ss_pred CeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 117 DGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 117 D~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
|++||..-+-...-...++.|++.+.. ...+.++.++++
T Consensus 87 ~~~ilvfD~~~~~s~~~i~~w~~~i~~-----~~~~~piilvgN 125 (219)
T PLN03071 87 QCAIIMFDVTARLTYKNVPTWHRDLCR-----VCENIPIVLCGN 125 (219)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEE
Confidence 999987554443333445566666542 234566666665
No 298
>PF12743 ESR1_C: Oestrogen-type nuclear receptor final C-terminal ; InterPro: IPR024736 This entry represents C-terminal domain (also known as the F domain) of the estrogen-type receptors. The actual function of this domain is not known, but it is absent from all the other types of nuclear receptors. Oestrogen receptors modulate AP-1-dependent transcription [] through two distinct mechanisms: via protein-protein interactions on DNA; and via non-genomic actions. The mechanism used depends on the cellular localisation of the receptor. In addition to the more extensively studied cross-talk on DNA, additional non-genomic actions might be very important in target tissues in which membrane-associated ERs are found. These non-genomic actions probably contribute to the overall physiological responses mediated by ligand-bound ERs [] and might possibly be mediated via this C-terminal domain.
Probab=24.75 E-value=59 Score=20.33 Aligned_cols=13 Identities=54% Similarity=0.501 Sum_probs=8.5
Q ss_pred cccccccCCCCCC
Q 040588 32 NLDQNQLTTTSTT 44 (252)
Q Consensus 32 ~~~~~~~~~~~~~ 44 (252)
.-.||||||++.-
T Consensus 11 E~~qsqLtt~sts 23 (43)
T PF12743_consen 11 EDSQSQLTTASTS 23 (43)
T ss_pred cccccccccccCC
Confidence 4468999665543
No 299
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=24.70 E-value=3.4e+02 Score=23.29 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=50.1
Q ss_pred EEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe-ccccCC
Q 040588 50 FIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG-FPTRFG 128 (252)
Q Consensus 50 lIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g-sP~y~g 128 (252)
.+|.++..|...-+-+.+...+-+..| .++++|....|.+.+ .+...+-...+++ |-+.--
T Consensus 106 ~vVigtveGDvHdIGk~iV~~ml~~aG--fevidLG~dvP~e~f----------------ve~a~e~k~d~v~~SalMTt 167 (227)
T COG5012 106 KVVIGTVEGDVHDIGKNIVATMLEAAG--FEVIDLGRDVPVEEF----------------VEKAKELKPDLVSMSALMTT 167 (227)
T ss_pred eEEEEeecccHHHHHHHHHHHHHHhCC--cEEEecCCCCCHHHH----------------HHHHHHcCCcEEechHHHHH
Confidence 456677788888888777666544255 568899876554322 2333333344444 334445
Q ss_pred CchHHHHHHHHhhhhhhhhccCCCCcE
Q 040588 129 SMASQMKAFFDSTFHLWEQQRLAGVPA 155 (252)
Q Consensus 129 ~~~~~~k~fld~l~~~~~~~~l~gK~~ 155 (252)
+++. ++..++.+.. ..++++..
T Consensus 168 tm~~-~~~viE~L~e----eGiRd~v~ 189 (227)
T COG5012 168 TMIG-MKDVIELLKE----EGIRDKVI 189 (227)
T ss_pred HHHH-HHHHHHHHHH----cCCccCeE
Confidence 5555 8888888864 35677764
No 300
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=24.65 E-value=1.6e+02 Score=26.41 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=30.8
Q ss_pred CCceEEEEEeCCc---hhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYSMY---GHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S~~---GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+++||.|+|+-.+ --+-+=++.+++.+.+ .+.++..+++.+
T Consensus 2 ~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~-~~~~v~~i~i~~ 45 (343)
T PRK14568 2 NRIKVGILFGGCSEEHPVSVKSAIEVARNLDT-EKYEPFYIGITK 45 (343)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHHHHHhhcc-cCCeEEEEEECC
Confidence 3579999998653 3355667788888887 788898888765
No 301
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.54 E-value=4.8e+02 Score=23.30 Aligned_cols=42 Identities=10% Similarity=0.164 Sum_probs=34.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
..+.++|.......+...++...+.+++ .|++++++++.+..
T Consensus 32 ~p~La~i~vg~~~~s~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 73 (296)
T PRK14188 32 TPGLAVVLVGEDPASQVYVRSKGKQTKE-AGMASFEHKLPADT 73 (296)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 3578888877777778889999899988 89999999998653
No 302
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=24.36 E-value=2.7e+02 Score=25.21 Aligned_cols=36 Identities=11% Similarity=-0.035 Sum_probs=26.2
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
+|+.|||.|.+| ...++.+.+.+++ .|.++..+.+.
T Consensus 119 k~vailYdsd~g--l~~lq~l~~~~~~-~g~~V~~~~~~ 154 (370)
T cd06389 119 DKFAYLYDSDRG--LSTLQAVLDSAAE-KKWQVTAINVG 154 (370)
T ss_pred cEEEEEecCchH--HHHHHHHHHhhcc-CCceEEEEEee
Confidence 689999986544 5577888888887 78776655543
No 303
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=23.85 E-value=5.1e+02 Score=24.06 Aligned_cols=68 Identities=16% Similarity=0.075 Sum_probs=37.3
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCC
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFG 128 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g 128 (252)
++|.|+|..+..+..++ .+++ .|..+-+++++-..|... .++ .+.+..++.|++.-=.+..
T Consensus 265 viV~~GS~~~~~keav~----~LR~-~G~kVGllri~~~rPFP~-------------~~i-~~~l~~~k~ViVvE~n~s~ 325 (394)
T PRK08367 265 IFVTMGSLAGTLKEFVD----KLRE-EGYKVGAAKLTVYRPFPV-------------EEI-RALAKKAKVLAFLEKNISF 325 (394)
T ss_pred EEEEeCccHHHHHHHHH----HHHh-cCCcceeEEEeEecCCCH-------------HHH-HHHHccCCEEEEEeCCCCC
Confidence 45666666665555444 4455 677788888876543100 012 3446778888776444322
Q ss_pred CchHHHH
Q 040588 129 SMASQMK 135 (252)
Q Consensus 129 ~~~~~~k 135 (252)
+..++|.
T Consensus 326 g~~g~l~ 332 (394)
T PRK08367 326 GLGGAVF 332 (394)
T ss_pred CCCCcHH
Confidence 2344443
No 304
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=23.81 E-value=1.8e+02 Score=23.93 Aligned_cols=11 Identities=55% Similarity=0.718 Sum_probs=8.9
Q ss_pred hhccCeEEEec
Q 040588 113 LVHADGLLFGF 123 (252)
Q Consensus 113 l~~aD~II~gs 123 (252)
+.++|+|||..
T Consensus 38 l~~~D~lilPG 48 (198)
T cd03130 38 LPDADGLYLGG 48 (198)
T ss_pred CCCCCEEEECC
Confidence 44599999987
No 305
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=23.65 E-value=3.8e+02 Score=23.02 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=37.9
Q ss_pred hhh-hccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCC-CCh----HHHHHHHHHHHHHcCc
Q 040588 111 DDL-VHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQG-GGQ----ETTAWTAITQLAHHGM 184 (252)
Q Consensus 111 ~~l-~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~-g~~----~~~l~~l~~~l~~~G~ 184 (252)
..| .++|++|++.|.--.+ ..-...||+.. .+|-.+.++....... .+. ......|...|..+|+
T Consensus 192 ~~IP~~~d~Lvi~~P~~~ls--~~e~~~l~~yl-------~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~Gi 262 (271)
T PF09822_consen 192 EEIPDDADVLVIAGPKTDLS--EEELYALDQYL-------MNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYGI 262 (271)
T ss_pred cccCCCCCEEEEECCCCCCC--HHHHHHHHHHH-------HcCCeEEEEECCcccccccccccccccccCHHHHHHHcCC
Confidence 445 8899999999986443 33344444432 2444555555432111 000 0013357778888888
Q ss_pred EEec
Q 040588 185 VYVP 188 (252)
Q Consensus 185 ~vv~ 188 (252)
.+-.
T Consensus 263 ~~~~ 266 (271)
T PF09822_consen 263 RINP 266 (271)
T ss_pred EeCC
Confidence 7743
No 306
>PF00496 SBP_bac_5: Bacterial extracellular solute-binding proteins, family 5 Middle; InterPro: IPR000914 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into Gram-positive bacteria which are surrounded by a single membrane and therefore have no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families of clusters, which generally correlate with the nature of the solute bound. Family 5 currently includes periplasmic oligopeptide-binding proteins (oppA) of Gram-negative bacteria and homologous lipoproteins in Gram-positive bacteria (oppA, amiA or appA); periplasmic dipeptide-binding proteins of Escherichia coli (dppA) and Bacillus subtilis (dppE); periplasmic murein peptide-binding protein of E. coli (mppA); periplasmic peptide-binding proteins sapA of E. coli, Salmonella typhimurium and Haemophilus influenzae; periplasmic nickel-binding protein (nikA) of E. coli; haem-binding lipoprotein (hbpA or dppA) from H. influenzae; lipoprotein xP55 from Streptomyces lividans; and hypothetical proteins from H. influenzae (HI0213) and Rhizobium sp. (strain NGR234) symbiotic plasmid (y4tO and y4wM).; GO: 0005215 transporter activity, 0006810 transport; PDB: 1B51_A 1B0H_A 1QKA_A 1B9J_A 1B6H_A 1OLA_A 1B3L_C 1JEV_A 1B5H_A 1JET_A ....
Probab=23.58 E-value=2e+02 Score=25.44 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=47.1
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC-CCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE-TLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~-~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
.+++++.+.+--...+++.|++.+++ .|+++++..+.. .. . . ....-.++|..+.+.-..
T Consensus 295 ~~~~~~~~~~~~~~~~a~~l~~~l~~-~Gi~v~i~~~~~~~~----~------------~--~~~~~~~~d~~~~~~~~~ 355 (374)
T PF00496_consen 295 PLIILYTSDDPIWKAIAEALQEQLKK-IGIKVEIKPVDFNDT----Y------------D--KRLRAGDFDMALSGWSGD 355 (374)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHHHHH-TTEEEEEEEESHHHH----H------------H--HHHHCTSESEEEEEEESS
T ss_pred cccccccccccchHHHHHHHHHHHhh-cceeEEEEEeChHHH----H------------H--HHhhCCCcCEEEEecCCC
Confidence 36666766777778999999999999 899999887743 10 0 0 022335788888865444
Q ss_pred CCCchHHHHHHH
Q 040588 127 FGSMASQMKAFF 138 (252)
Q Consensus 127 ~g~~~~~~k~fl 138 (252)
....+..+..|+
T Consensus 356 ~~~~~~~~~~~~ 367 (374)
T PF00496_consen 356 YPDPYSFLYPFF 367 (374)
T ss_dssp SSSTHHHHHHHH
T ss_pred CCCHHHHHHHHc
Confidence 455555444443
No 307
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=23.45 E-value=5.7e+02 Score=23.30 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=13.3
Q ss_pred hhhhccCeEEEeccccC
Q 040588 111 DDLVHADGLLFGFPTRF 127 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~ 127 (252)
+.+..+|.||++.|+++
T Consensus 67 ~a~~~ad~iv~avPs~~ 83 (329)
T COG0240 67 EALDGADIIVIAVPSQA 83 (329)
T ss_pred HHHhcCCEEEEECChHH
Confidence 34556999999999864
No 308
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=23.45 E-value=2.8e+02 Score=22.66 Aligned_cols=26 Identities=35% Similarity=0.536 Sum_probs=18.1
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
...+..+|.|||.||. .++.|++.+.
T Consensus 44 ~~~~~~~~~iiftS~~-------av~~~~~~~~ 69 (239)
T cd06578 44 LADLDEYDWLIFTSPN-------AVEAFFEALE 69 (239)
T ss_pred HHhcCCCCEEEEECHH-------HHHHHHHHHH
Confidence 3455689999999994 4566665543
No 309
>PLN02204 diacylglycerol kinase
Probab=23.38 E-value=2.1e+02 Score=28.39 Aligned_cols=81 Identities=10% Similarity=0.003 Sum_probs=47.1
Q ss_pred CCCceEEEEEe--CCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE
Q 040588 44 TGQLKIFIIFY--SMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 44 ~~~~kIlIIy~--S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
..++++++|+- |..|+..+..+.++..++. ++++++++.-....- .. +-+..+...++..+|+||.
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~-a~i~~~v~~T~~agh--A~---------d~~~~~~~~~l~~~D~VVa 224 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIR-AKVKTKVIVTERAGH--AF---------DVMASISNKELKSYDGVIA 224 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHH-cCCeEEEEEecCcch--HH---------HHHHHHhhhhccCCCEEEE
Confidence 34567777764 3456777778888888877 788887766543210 00 0000000113567899987
Q ss_pred eccccCCCchHHHHHHH
Q 040588 122 GFPTRFGSMASQMKAFF 138 (252)
Q Consensus 122 gsP~y~g~~~~~~k~fl 138 (252)
..- .|.+...+..++
T Consensus 225 VGG--DGt~nEVlNGL~ 239 (601)
T PLN02204 225 VGG--DGFFNEILNGYL 239 (601)
T ss_pred EcC--ccHHHHHHHHHh
Confidence 754 255666666565
No 310
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.20 E-value=1.4e+02 Score=26.75 Aligned_cols=36 Identities=19% Similarity=0.067 Sum_probs=27.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEE
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLY 82 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~ 82 (252)
|+||.|++-...-.+..+++.+.+-+++ .|+++.+.
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~ 36 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRA 36 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEe
Confidence 5678888876665677888999888877 78877654
No 311
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=23.13 E-value=1.2e+02 Score=26.02 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=28.8
Q ss_pred eEEEEEeC--C--chhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 48 KIFIIFYS--M--YGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 48 kIlIIy~S--~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
||++|..+ + .|-.+..+..+++.+.+ .|.+|.++.....
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 43 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAK-RGHEVAVLTAGED 43 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHh-cCCceEEEeCCCC
Confidence 57777533 3 36678888888999987 7999999876543
No 312
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=23.07 E-value=3e+02 Score=27.84 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=48.0
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRF 127 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~ 127 (252)
+|+||- +|+.-..|..+++.+++ .|+++++++++...|. |...+ .+.+.+++.||..==-+.
T Consensus 569 dvtIia---~G~mv~~Al~AA~~L~~-~GI~vtVIdlr~ikPL-------------D~e~I-~~~~~k~~~vVTvEE~~~ 630 (701)
T PLN02225 569 DVALLG---YGAMVQNCLHAHSLLSK-LGLNVTVADARFCKPL-------------DIKLV-RDLCQNHKFLITVEEGCV 630 (701)
T ss_pred CEEEEe---ccHHHHHHHHHHHHHHh-cCCCEEEEecCCCCCC-------------CHHHH-HHHHhhcCeEEEEcCCCC
Confidence 565554 56666667777777777 7999999999876441 11111 344566777776633334
Q ss_pred CCchHHHHHHHHh
Q 040588 128 GSMASQMKAFFDS 140 (252)
Q Consensus 128 g~~~~~~k~fld~ 140 (252)
|++-+.+..++-.
T Consensus 631 GG~Gs~Va~~l~~ 643 (701)
T PLN02225 631 GGFGSHVAQFIAL 643 (701)
T ss_pred CchHHHHHHHHHh
Confidence 7777777777754
No 313
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=23.01 E-value=1.2e+02 Score=28.16 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=23.4
Q ss_pred ceEEEEEeCCch--hHHHHHHHHHHhcccc-CCceEEEEECCC
Q 040588 47 LKIFIIFYSMYG--HVEILARRMKKGVDSI-DGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S~~G--nT~~la~~i~~~l~~~-~G~ev~l~~l~~ 86 (252)
|||||.-.|-.| .+..++++|++++++. .++++..+.+.|
T Consensus 1 MkiliApDsFKgslsa~ea~~ai~~g~~~~~p~~~~~~~PlaD 43 (377)
T PF02595_consen 1 MKILIAPDSFKGSLSAAEAAEAIAEGIRRVFPDAEVVLIPLAD 43 (377)
T ss_dssp -EEEE----BTTTB-HHHHHHHHHHHHHCCSTTSEEEE----S
T ss_pred CeEEEEccCCCCCcCHHHHHHHHHHHHHHhccCcEEEEEecCC
Confidence 799999999655 4788999999999862 356777766665
No 314
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.91 E-value=1.5e+02 Score=26.39 Aligned_cols=35 Identities=17% Similarity=0.015 Sum_probs=26.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEE
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLY 82 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~ 82 (252)
++||.|++-... ....+++.+.+-+++ .|+++.+.
T Consensus 10 ~~~i~ii~~~~~-~~~~~~~~i~~~l~~-~g~~~~~~ 44 (287)
T PRK14077 10 IKKIGLVTRPNV-SLDKEILKLQKILSI-YKVEILLE 44 (287)
T ss_pred CCEEEEEeCCcH-HHHHHHHHHHHHHHH-CCCEEEEe
Confidence 567888886654 777888888888877 67776553
No 315
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=22.74 E-value=1.8e+02 Score=22.77 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=23.8
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
.+.+..+|.||...+..... ...++.+++-+.
T Consensus 55 ~~al~~~d~vi~~~~~~~~~-~~~~~~~~~a~~ 86 (183)
T PF13460_consen 55 KAALKGADAVIHAAGPPPKD-VDAAKNIIEAAK 86 (183)
T ss_dssp HHHHTTSSEEEECCHSTTTH-HHHHHHHHHHHH
T ss_pred hhhhhhcchhhhhhhhhccc-cccccccccccc
Confidence 45678899999999877665 455677777654
No 316
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.48 E-value=5.5e+02 Score=23.84 Aligned_cols=111 Identities=11% Similarity=0.037 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCC--CCCCCCcccchhhh-------hccCeEEEeccccCCCc
Q 040588 60 VEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVP--QKGIEVPVIAVDDL-------VHADGLLFGFPTRFGSM 130 (252)
Q Consensus 60 T~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~--~~~d~~~~~~~~~l-------~~aD~II~gsP~y~g~~ 130 (252)
.++|.+.|.+..+. .. -+++-|-.. |. ...||+..+ ..++ .....|.+-+|-|.++.
T Consensus 66 ~~~L~~~i~~~~~~-~~--p~~I~v~~t----------C~~~liGdDi~~v-~~~~~~~~~~~~~~~vi~v~tpgf~g~~ 131 (428)
T cd01965 66 EDNLIEALKNLLSR-YK--PDVIGVLTT----------CLTETIGDDVAGF-IKEFRAEGPEPADFPVVYASTPSFKGSH 131 (428)
T ss_pred HHHHHHHHHHHHHh-cC--CCEEEEECC----------cchhhcCCCHHHH-HHHHHhhccCCCCCeEEEeeCCCCCCcH
Confidence 57788888777754 22 233333322 22 112444433 3333 24557777789998876
Q ss_pred hHHHHHHHHhhhhhhhhcc--CCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEec
Q 040588 131 ASQMKAFFDSTFHLWEQQR--LAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVP 188 (252)
Q Consensus 131 ~~~~k~fld~l~~~~~~~~--l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~ 188 (252)
.......+..+...+.... -+.+.+-+++.+-.. .+ .+.++.+.|...|+.++.
T Consensus 132 ~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~-~~---d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 132 ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLT-PG---DVREIKRILEAFGLEPII 187 (428)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCC-cc---CHHHHHHHHHHcCCCEEE
Confidence 5554545544433221111 123345555422111 11 356888899999998764
No 317
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.38 E-value=5.5e+02 Score=22.77 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=34.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
..+.++|.......+...++...+.+++ .|++++++++.+..
T Consensus 31 ~P~La~I~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 72 (282)
T PRK14180 31 TPKLVAIIVGNDPASKTYVASKEKACAQ-VGIDSQVITLPEHT 72 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 3578888877777778888898899988 89999999998753
No 318
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.24 E-value=5.3e+02 Score=22.89 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=33.2
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
.+..+|......-+...++...+.+++ .|++++++++.+..
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 73 (284)
T PRK14190 33 PGLAVILVGDDPASHSYVRGKKKAAEK-VGIYSELYEFPADI 73 (284)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 467777776666777888888888888 89999999998753
No 319
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=22.22 E-value=2.4e+02 Score=25.18 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=35.2
Q ss_pred HHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 040588 135 KAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 135 k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
..|++.+.+....+.|.||.++++.+-+. .......+.+.+...|..+.+.
T Consensus 66 d~f~~~~~~~lv~g~L~g~~V~vV~~p~a----~~~~~~~v~~~L~~AGA~v~g~ 116 (308)
T PF11382_consen 66 DQFIAAVAPRLVAGRLTGRSVAVVTLPGA----DDEDVDAVRELLEQAGATVTGR 116 (308)
T ss_pred HHHHHHHHHHHhcCccCCCEEEEEEcCCC----ChHHHHHHHHHHHHCCCeEEEE
Confidence 44555544444457899999999987443 2234677888899999988764
No 320
>COG3828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.18 E-value=51 Score=27.77 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=25.4
Q ss_pred CCCceEEEEEeCCchhH-HHHHHHHHHhccccCCceEEE
Q 040588 44 TGQLKIFIIFYSMYGHV-EILARRMKKGVDSIDGVEGVL 81 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT-~~la~~i~~~l~~~~G~ev~l 81 (252)
++++|++|+|+--.|++ +..|..+..-+++ .|..|++
T Consensus 1 ~m~~kalIvwgGW~gHeP~~~ahi~~~~l~e-e~f~vev 38 (239)
T COG3828 1 QMEKKALIVWGGWRGHEPETRAHIIKGPLEE-EGFLVEV 38 (239)
T ss_pred CCCcceEEEEccccCCCchhcchhccCcChh-hceEEEe
Confidence 46789999999777775 5556666555665 6665554
No 321
>PF02288 Dehydratase_MU: Dehydratase medium subunit; InterPro: IPR003208 This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.; PDB: 2D0P_B 2D0O_D 1IWP_E 1MMF_B 1NBW_B 3AUJ_B 1UC5_B 1IWB_B 1EEX_E 1DIO_B ....
Probab=22.18 E-value=79 Score=23.99 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=24.8
Q ss_pred EEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 51 IIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 51 IIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.+|.+.+-....+.+.|..|++| +|+..+++...+
T Consensus 6 ~i~~~~~~~~~~~lrev~aGIEE-EGip~~~~~~~~ 40 (112)
T PF02288_consen 6 GIYVSKTIEGSDVLREVLAGIEE-EGIPYRVVRVSD 40 (112)
T ss_dssp CCCEECTTTCHHHHHHHHHHHHC-TT-EEEEEEECS
T ss_pred EEEecCCCcchhHHHHHHhHhcc-cCCCeEEEeecC
Confidence 34555433326789999999999 999998877654
No 322
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=22.04 E-value=2e+02 Score=25.82 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=33.0
Q ss_pred ceEEEEEeCCch-hHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 47 LKIFIIFYSMYG-HVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 47 ~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
+++-||.+|..| +...+++.+.+.+++ .|.+..++-+.+..
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~-~gkk~y~i~~~~in 254 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEE-LGKEALLILLDNIS 254 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHH-cCCeEEEEEeCCCC
Confidence 467888888755 467799999999988 89899888888754
No 323
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=21.92 E-value=1.1e+02 Score=26.85 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=29.3
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.||+|+.+-.+..=+.++.++ +. .|.+++.+.+.+... ....+.++|+|||..-
T Consensus 2 pkV~Vl~~pGtNce~e~~~A~----~~-aG~~~~~v~~~dl~~-------------------~~~~l~~~~~lvipGG 55 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERETAAAF----EN-AGFEPEIVHINDLLS-------------------GESDLDDFDGLVIPGG 55 (259)
T ss_dssp -EEEEEE-TTEEEHHHHHHHH----HC-TT-EEEEEECCHHHT-------------------TS--GCC-SEEEE-EE
T ss_pred CEEEEEECCCCCCHHHHHHHH----HH-cCCCceEEEEEeccc-------------------ccCchhhCcEEEECCc
Confidence 478888766544444455444 33 688888888876310 1346788999988643
No 324
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=21.91 E-value=1.6e+02 Score=24.97 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=27.2
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
||++|..+ .|........+++.+.+ .|.++.++.....
T Consensus 1 kIl~i~~~-~~g~~~~~~~l~~~L~~-~g~~v~~~~~~~~ 38 (359)
T cd03808 1 KILHIVTV-DGGLYSFRLPLIKALRA-AGYEVHVVAPPGD 38 (359)
T ss_pred CeeEEEec-chhHHHHHHHHHHHHHh-cCCeeEEEecCCC
Confidence 68888877 44445566677788876 7889988876543
No 325
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=21.87 E-value=4.8e+02 Score=21.99 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=28.1
Q ss_pred eEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 48 KIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 48 kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
||++|..+. .|-.+.++..+++.+.+ .|.+++++....
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~-~~~~v~~~~~~~ 39 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDR-DRFEHVVISLTD 39 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhh-ccceEEEEecCc
Confidence 577666553 46678888888888876 688888887654
No 326
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.87 E-value=5.9e+02 Score=23.44 Aligned_cols=112 Identities=12% Similarity=0.050 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCC--CCCCCCcccchhhhh---ccCeEEEeccccCCCchH
Q 040588 58 GHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVP--QKGIEVPVIAVDDLV---HADGLLFGFPTRFGSMAS 132 (252)
Q Consensus 58 GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~--~~~d~~~~~~~~~l~---~aD~II~gsP~y~g~~~~ 132 (252)
|..++|.++|.+..+. .. -+++-|-.. |. ...||+..+ ..++. +...|.+-+|-|.++...
T Consensus 69 Gg~~~L~~~i~~~~~~-~~--P~~i~v~~t----------C~~~~iGdDi~~v-~~~~~~~~~~~vi~v~t~gf~g~~~~ 134 (410)
T cd01968 69 GGEKKLYKAILEIIER-YH--PKAVFVYST----------CVVALIGDDIDAV-CKTASEKFGIPVIPVHSPGFVGNKNL 134 (410)
T ss_pred ccHHHHHHHHHHHHHh-CC--CCEEEEECC----------CchhhhccCHHHH-HHHHHHhhCCCEEEEECCCcccChhH
Confidence 4477888888888865 22 234443332 22 112444333 23232 566788889999887554
Q ss_pred HHHHHHHhhhhhhhhc----cCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEec
Q 040588 133 QMKAFFDSTFHLWEQQ----RLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVP 188 (252)
Q Consensus 133 ~~k~fld~l~~~~~~~----~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~ 188 (252)
-....++.+...+... .-..+.+-+++...+. + .+.++.+.|...|+.++.
T Consensus 135 G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~-~----d~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 135 GNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVA-G----ELWGVKPLLEKLGIRVLA 189 (410)
T ss_pred HHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCc-c----cHHHHHHHHHHcCCeEEE
Confidence 4444444443322111 1113456666644331 2 245788888899998763
No 327
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.63 E-value=4e+02 Score=20.80 Aligned_cols=104 Identities=10% Similarity=0.103 Sum_probs=54.5
Q ss_pred eCCchhHHHHHH-HHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCCCchH
Q 040588 54 YSMYGHVEILAR-RMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMAS 132 (252)
Q Consensus 54 ~S~~GnT~~la~-~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g~~~~ 132 (252)
++..|...-+.. .++..+++ .|. +++++.-..|.+. + .+...+.|.-++|-....+.--.
T Consensus 7 gtv~~D~HdiGk~iv~~~l~~-~Gf--eVi~LG~~v~~e~---------------~-v~aa~~~~adiVglS~l~~~~~~ 67 (134)
T TIGR01501 7 GVIGSDCHAVGNKILDHAFTN-AGF--NVVNLGVLSPQEE---------------F-IKAAIETKADAILVSSLYGHGEI 67 (134)
T ss_pred EEecCChhhHhHHHHHHHHHH-CCC--EEEECCCCCCHHH---------------H-HHHHHHcCCCEEEEecccccCHH
Confidence 454333333333 33344454 564 5678776543321 2 45566667766676666677777
Q ss_pred HHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCc
Q 040588 133 QMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGM 184 (252)
Q Consensus 133 ~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~ 184 (252)
.|+.+++++.. ..+.+++ +..+|...-..+ ........|...|+
T Consensus 68 ~~~~~~~~l~~----~gl~~~~---vivGG~~vi~~~-d~~~~~~~l~~~Gv 111 (134)
T TIGR01501 68 DCKGLRQKCDE----AGLEGIL---LYVGGNLVVGKQ-DFPDVEKRFKEMGF 111 (134)
T ss_pred HHHHHHHHHHH----CCCCCCE---EEecCCcCcChh-hhHHHHHHHHHcCC
Confidence 89999988864 2354543 333333111111 22334455666675
No 328
>PRK08655 prephenate dehydrogenase; Provisional
Probab=21.49 E-value=2e+02 Score=27.06 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=39.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|||+||-++ | .|...++..+.+ .|.++.+++..............+.. .... .+.+.++|.||++.|+.
T Consensus 1 MkI~IIGG~--G---~mG~slA~~L~~-~G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~-~e~~~~aDvVIlavp~~ 69 (437)
T PRK08655 1 MKISIIGGT--G---GLGKWFARFLKE-KGFEVIVTGRDPKKGKEVAKELGVEY----ANDN-IDAAKDADIVIISVPIN 69 (437)
T ss_pred CEEEEEecC--C---HHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHcCCee----ccCH-HHHhccCCEEEEecCHH
Confidence 577776432 2 345555555555 57777777643211101111111100 0011 34567899999999983
Q ss_pred CCCchHHHHHHHHhhh
Q 040588 127 FGSMASQMKAFFDSTF 142 (252)
Q Consensus 127 ~g~~~~~~k~fld~l~ 142 (252)
.+..+++.+.
T Consensus 70 ------~~~~vl~~l~ 79 (437)
T PRK08655 70 ------VTEDVIKEVA 79 (437)
T ss_pred ------HHHHHHHHHH
Confidence 3345555543
No 329
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=21.45 E-value=1.7e+02 Score=25.42 Aligned_cols=40 Identities=13% Similarity=-0.039 Sum_probs=28.3
Q ss_pred CceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+|+++|+-.. .+...+..+.+.+.+.+ .|.+++++....
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~ 42 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWE 42 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecC
Confidence 56888888654 44556777788888877 788877766543
No 330
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=21.43 E-value=1.2e+02 Score=26.72 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=23.6
Q ss_pred cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCC
Q 040588 124 PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGT 163 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~ 163 (252)
|.+.....+.++.|+++-. .++|+.+++++++|.
T Consensus 8 p~~~~d~~s~~~eFi~~q~------s~~~rrIVlVTSGGT 41 (302)
T KOG2728|consen 8 PESLDDPGSLIEEFIKLQA------SLQGRRIVLVTSGGT 41 (302)
T ss_pred cccccchhHHHHHHHHHHh------hccCceEEEEecCCe
Confidence 4455666677899999864 467777777776653
No 331
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=21.43 E-value=1.4e+02 Score=23.61 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=24.5
Q ss_pred hccCeEEEecc-ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 114 VHADGLLFGFP-TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 114 ~~aD~II~gsP-~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
.++|.||+... .+.....+.++.||.+... +++.++.+++
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~-------~~~~i~aic~ 99 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALK-------QGKPVAAICG 99 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHH-------cCCEEEEECh
Confidence 57898776543 3333344667888887642 5666665554
No 332
>PRK13626 transcriptional regulator SgrR; Provisional
Probab=21.29 E-value=2.4e+02 Score=27.29 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=26.9
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
++-+.|++.+...+.+|+.|++.+++ .|+++++..+.
T Consensus 404 ~l~l~~~~~~~~~~~~A~~iq~~l~~-~GI~v~i~~~~ 440 (552)
T PRK13626 404 SLTLTFYQDHSEHRVIAGIMQQLLAS-HGVTLEIQEID 440 (552)
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHH-hCcEEEEEEee
Confidence 34444544445667899999999998 79998875553
No 333
>PRK06701 short chain dehydrogenase; Provisional
Probab=21.22 E-value=3.3e+02 Score=23.56 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=41.8
Q ss_pred cCccccccCCCCCCCCCCCCCCccccccccCCC-----CCCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEE
Q 040588 9 PSKKKFAIDMPEQDPSNPDGVSSNLDQNQLTTT-----STTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYR 83 (252)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~ 83 (252)
|..|.|- .||.|......|+.+-+.-..-++. ++..+.|+++|.+...|--..+++.++ + .|.++.++.
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~iLItGasggIG~~la~~l~----~-~G~~V~l~~ 77 (290)
T PRK06701 4 PRQKPFP-PMPAQHQNKQPGIESLMNPLPQFEAPNYKGSGKLKGKVALITGGDSGIGRAVAVLFA----K-EGADIAIVY 77 (290)
T ss_pred CCCCCCC-CCcchhhccCcChhhhCCcccCCCccccccccCCCCCEEEEeCCCcHHHHHHHHHHH----H-CCCEEEEEe
Confidence 4455553 6898888888888877655422333 233334666777655554455555554 3 466766665
Q ss_pred CC
Q 040588 84 VP 85 (252)
Q Consensus 84 l~ 85 (252)
..
T Consensus 78 r~ 79 (290)
T PRK06701 78 LD 79 (290)
T ss_pred CC
Confidence 44
No 334
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=21.20 E-value=1.3e+02 Score=27.30 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=27.0
Q ss_pred EEEEEeCC-chhHHHHHHHHHHhcccc--CCceEEEEECCCC
Q 040588 49 IFIIFYSM-YGHVEILARRMKKGVDSI--DGVEGVLYRVPET 87 (252)
Q Consensus 49 IlIIy~S~-~GnT~~la~~i~~~l~~~--~G~ev~l~~l~~~ 87 (252)
|||++.|- .|+ ...|++|.+.+.+. .+++|+++|+-+.
T Consensus 1 ilils~~~G~GH-~~aa~al~~~~~~~~~~~~~v~~~d~~~~ 41 (382)
T PLN02605 1 VLILMSDTGGGH-RASAEAIKDAFQLEFGDEYQVFIVDLWKE 41 (382)
T ss_pred CEEEEEcCCcCh-HHHHHHHHHHHHhhcCCCeeEEEEehhhh
Confidence 68999885 566 67889999988641 2356777776543
No 335
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.20 E-value=5e+02 Score=24.25 Aligned_cols=117 Identities=11% Similarity=0.027 Sum_probs=62.9
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCC--CCCCCCcccchhhhh-------ccCeE
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVP--QKGIEVPVIAVDDLV-------HADGL 119 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~--~~~d~~~~~~~~~l~-------~aD~I 119 (252)
.-+||++ .++|.++|.+..+. .. -+++-|-.. |. ...||+..+ ..++. ....|
T Consensus 63 ~d~V~Gg----~~~L~~ai~~~~~~-~~--p~~I~v~tt----------C~~~iiGdDi~~v-~~~~~~~~~~~~~~~vi 124 (435)
T cd01974 63 DAAVFGG----QNNLIDGLKNAYAV-YK--PDMIAVSTT----------CMAEVIGDDLNAF-IKNAKNKGSIPADFPVP 124 (435)
T ss_pred CceEECc----HHHHHHHHHHHHHh-cC--CCEEEEeCC----------chHhhhhccHHHH-HHHHHHhccCCCCCeEE
Confidence 3466654 47788888877765 22 234444332 21 112343332 22221 45788
Q ss_pred EEeccccCCCchHHHHHHHHhhhhhhhhcc---CCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEe
Q 040588 120 LFGFPTRFGSMASQMKAFFDSTFHLWEQQR---LAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYV 187 (252)
Q Consensus 120 I~gsP~y~g~~~~~~k~fld~l~~~~~~~~---l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv 187 (252)
.+-+|-|.|+...-....++.+...+.... -+.+.+-+++ ++.. . ...+.++.+.|...|+.++
T Consensus 125 ~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~--~~~~-~-~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 125 FANTPSFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIP--GFDT-Y-AGNMREIKRLLELMGVDYT 191 (435)
T ss_pred EecCCCCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEEC--CCCC-C-cchHHHHHHHHHHcCCCEE
Confidence 888999998877666666666543221110 1222344443 2221 1 1136788899999999875
No 336
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=21.06 E-value=5.9e+02 Score=22.70 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=22.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCC--ceEEEEEC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDG--VEGVLYRV 84 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G--~ev~l~~l 84 (252)
-+||.|||.+..|. ..++.+.+.+++ .| +++.....
T Consensus 126 wk~vaii~~~~~~~--~~~~~~~~~~~~-~g~~i~v~~~~~ 163 (382)
T cd06380 126 WRKVVYLYDSDRGL--LRLQQLLDYLRE-KDNKWQVTARRV 163 (382)
T ss_pred CeEEEEEECCCcch--HHHHHHHHHHhc-cCCceEEEEEEe
Confidence 46899999776654 234456667766 56 55554433
No 337
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.97 E-value=2.2e+02 Score=23.13 Aligned_cols=42 Identities=10% Similarity=-0.007 Sum_probs=27.1
Q ss_pred cCCCCcEEEEEeeCCCC-CChHHHHHHHHHHHHHcCcEEecCC
Q 040588 149 RLAGVPAGFFVSTGTQG-GGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 149 ~l~gK~~~if~s~G~~~-g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
.++||++.++-|+.-.+ ..+-..++.|.+.....|+.|++.+
T Consensus 22 ~~~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~~Gf~VLgFP 64 (162)
T COG0386 22 DYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVLGFP 64 (162)
T ss_pred HhCCcEEEEEEcccccCCcHhHHHHHHHHHHHhhCCcEEEecc
Confidence 46888877765543211 1233457788888888888888754
No 338
>PHA03075 glutaredoxin-like protein; Provisional
Probab=20.92 E-value=1.7e+02 Score=22.47 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=21.4
Q ss_pred CceEEEEEeCCc-hhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 46 QLKIFIIFYSMY-GHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 46 ~~kIlIIy~S~~-GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
|+++||+++-+. |-++.+- .+.+.++. +.++.++
T Consensus 1 mK~tLILfGKP~C~vCe~~s-~~l~~led----eY~ilrV 35 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESIS-EALKELED----EYDILRV 35 (123)
T ss_pred CCceEEEeCCcccHHHHHHH-HHHHHhhc----cccEEEE
Confidence 678999999885 5555444 44466654 3444444
No 339
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=20.91 E-value=1.7e+02 Score=22.52 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=20.8
Q ss_pred ceEEEEEe-CCchhHH-HHHHHHHHhccccCCce-EEEEECCC
Q 040588 47 LKIFIIFY-SMYGHVE-ILARRMKKGVDSIDGVE-GVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~-S~~GnT~-~la~~i~~~l~~~~G~e-v~l~~l~~ 86 (252)
||++|+.- +|+|+.. .-|-.++..+.+ .|.+ +.++-..|
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~-~gh~v~~vFf~~D 42 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLA-EGHELVSVFFYQD 42 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHh-CCCCeeEEEEehH
Confidence 67876664 4675432 333334444444 4666 46666654
No 340
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=20.88 E-value=2.3e+02 Score=18.15 Aligned_cols=38 Identities=5% Similarity=-0.050 Sum_probs=19.4
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|.+.+.+.-+.+..+...+.+-..+..+++...+++.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~ 40 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE 40 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc
Confidence 44444444577766655554333321245666666543
No 341
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=20.83 E-value=1.5e+02 Score=23.89 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=31.4
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 46 QLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.++++||-.|. -|. -++.. +.. .|+.|++.+.... .+ .+.+.+||.||.+.+
T Consensus 36 Gk~v~VvGrs~~VG~--Pla~l----L~~-~~atVt~~h~~T~-------------------~l-~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGK--PLAML----LLN-KGATVTICHSKTK-------------------NL-QEITRRADIVVSAVG 88 (160)
T ss_dssp T-EEEEE-TTTTTHH--HHHHH----HHH-TT-EEEEE-TTSS-------------------SH-HHHHTTSSEEEE-SS
T ss_pred CCEEEEECCcCCCCh--HHHHH----HHh-CCCeEEeccCCCC-------------------cc-cceeeeccEEeeeec
Confidence 46889988775 343 22322 333 5777887765532 11 566789999999998
Q ss_pred ccC
Q 040588 125 TRF 127 (252)
Q Consensus 125 ~y~ 127 (252)
.-.
T Consensus 89 ~~~ 91 (160)
T PF02882_consen 89 KPN 91 (160)
T ss_dssp STT
T ss_pred ccc
Confidence 743
No 342
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=20.75 E-value=4.5e+02 Score=21.10 Aligned_cols=47 Identities=6% Similarity=0.050 Sum_probs=26.9
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
..+..+|++||..-.-...-...++.++.++... ....++++.++++
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~N 112 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEV---KEDKFVPIVVVGN 112 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCcEEEEEE
Confidence 3467899999976554332223455555554321 1224677777776
No 343
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=20.47 E-value=4.1e+02 Score=24.08 Aligned_cols=37 Identities=5% Similarity=0.098 Sum_probs=23.5
Q ss_pred ceEEEEEeCC-chhH-HHHHHHHHHhccccCCceEEEEEC
Q 040588 47 LKIFIIFYSM-YGHV-EILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 47 ~kIlIIy~S~-~GnT-~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
.+|.+||.+. +|.. ...++.+.+.+++ .|+++.....
T Consensus 138 ~~vaiiy~~~~~~~~~~~~~~~l~~~~~~-~gi~v~~~~~ 176 (387)
T cd06386 138 RSALLVYEDDKQERNCYFTLEGVHHVFQE-EGYHMSIYPF 176 (387)
T ss_pred eEEEEEEEcCCCCccceehHHHHHHHHHh-cCceEEEEec
Confidence 5788888643 3422 2247777777777 7877766544
No 344
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=20.39 E-value=1.3e+02 Score=25.31 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=29.5
Q ss_pred eEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 48 KIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 48 kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
||+++..+. .|.+...+..+++.+.+ .|.++.++.....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~-~g~~v~v~~~~~~ 40 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDK-RGYDVTLVVLRDE 40 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHh-cCceEEEEEcCCC
Confidence 678877774 56677788888888866 7889998876543
No 345
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.36 E-value=6.1e+02 Score=22.46 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=34.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
..+..+|......-+...++...+.+++ .|++++++++.+..
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 73 (278)
T PRK14172 32 IPKIASILVGNDGGSIYYMNNQEKVANS-LGIDFKKIKLDESI 73 (278)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 3577888877777778888888888888 89999999998653
No 346
>PRK08118 topology modulation protein; Reviewed
Probab=20.26 E-value=1.2e+02 Score=24.34 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=19.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhcc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVD 72 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~ 72 (252)
|+||+|+=.+..|.| .+|+.|.+.+.
T Consensus 1 m~rI~I~G~~GsGKS-Tlak~L~~~l~ 26 (167)
T PRK08118 1 MKKIILIGSGGSGKS-TLARQLGEKLN 26 (167)
T ss_pred CcEEEEECCCCCCHH-HHHHHHHHHhC
Confidence 578877766678887 48999988875
No 347
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=20.22 E-value=7.6e+02 Score=23.52 Aligned_cols=113 Identities=13% Similarity=0.197 Sum_probs=56.3
Q ss_pred HHHHHHHhccccCCceEEEEECCCCCCHHHHhccc-C--CCCCCCCcccchhhhhccCeEEEeccccCCCchHHHHHHHH
Q 040588 63 LARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMK-V--PQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFD 139 (252)
Q Consensus 63 la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~-~--~~~~d~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld 139 (252)
|...++..+.+ .|.+|.+++.....-........ . ....+...++ ...+..+|.||+..|. ...+...++
T Consensus 10 MG~~mA~nL~~-~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~-v~~l~~~dvIil~v~~-----~~~v~~Vi~ 82 (467)
T TIGR00873 10 MGSNLALNMAD-HGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEF-VQSLERPRKIMLMVKA-----GAPVDAVIN 82 (467)
T ss_pred HHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHH-HhhcCCCCEEEEECCC-----cHHHHHHHH
Confidence 55566666665 67788887764321111111100 0 0001111111 2344568999988776 244566666
Q ss_pred hhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCcc
Q 040588 140 STFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYT 192 (252)
Q Consensus 140 ~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~ 192 (252)
.+... .-+|+. +.-.++. ....+ ......+..+|+.+++.+..
T Consensus 83 ~l~~~----L~~g~i---IID~gns--~~~~t-~~~~~~l~~~gi~fvdapVs 125 (467)
T TIGR00873 83 QLLPL----LEKGDI---IIDGGNS--HYPDT-ERRYKELKAKGILFVGSGVS 125 (467)
T ss_pred HHHhh----CCCCCE---EEECCCc--CHHHH-HHHHHHHHhcCCEEEcCCCC
Confidence 55431 123443 3433331 22333 33455678889999987654
No 348
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.20 E-value=6.2e+02 Score=22.47 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=34.3
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
..+.++|.....-.+...++...+.+++ .|++++++++.+.
T Consensus 30 ~P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 70 (282)
T PRK14166 30 ESCLAVILVGDNPASQTYVKSKAKACEE-CGIKSLVYHLNEN 70 (282)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 3477788877777788889999999988 8999999999875
No 349
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=20.19 E-value=3.6e+02 Score=22.46 Aligned_cols=22 Identities=27% Similarity=0.470 Sum_probs=12.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHH
Q 040588 46 QLKIFIIFYSMYGHVEILARRMK 68 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~ 68 (252)
|.+|+|+.+-. -.|..+++.+.
T Consensus 1 ~~~ilIld~g~-q~~~li~r~~r 22 (198)
T COG0518 1 MRKILILDFGG-QYLGLIARRLR 22 (198)
T ss_pred CcEEEEEeCCC-cHhHHHHHHHH
Confidence 45788877432 23445555554
No 350
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=20.09 E-value=7.1e+02 Score=23.15 Aligned_cols=113 Identities=15% Similarity=0.015 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCC--CCCCCCcccchhhh--hccCeEEEeccccCCCchHH
Q 040588 58 GHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVP--QKGIEVPVIAVDDL--VHADGLLFGFPTRFGSMASQ 133 (252)
Q Consensus 58 GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~--~~~d~~~~~~~~~l--~~aD~II~gsP~y~g~~~~~ 133 (252)
|..++|.++|.+..+. .. -+++-+-.. |. ...||+..+ ..++ .....|.+-+|-|.++...-
T Consensus 69 Gg~~kL~~~I~~~~~~-~~--p~~I~V~tt----------C~~~~IGdDi~~v-~~~~~~~~~~vi~v~t~gf~g~~~~G 134 (427)
T cd01971 69 GGEDRLRELIKSTLSI-ID--ADLFVVLTG----------CIAEIIGDDVGAV-VSEFQEGGAPIVYLETGGFKGNNYAG 134 (427)
T ss_pred CCHHHHHHHHHHHHHh-CC--CCEEEEEcC----------CcHHHhhcCHHHH-HHHhhhcCCCEEEEECCCcCcccccH
Confidence 3468888888887764 22 334444332 21 112344333 3333 34678888899998876444
Q ss_pred ----HHHHHHhhhhhhhhcc-CCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEe
Q 040588 134 ----MKAFFDSTFHLWEQQR-LAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYV 187 (252)
Q Consensus 134 ----~k~fld~l~~~~~~~~-l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv 187 (252)
++.+++++.. ... -..+.+-+++............+.++.+.|...|+.+.
T Consensus 135 ~~~a~~al~~~~~~---~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~ 190 (427)
T cd01971 135 HEIVLKAIIDQYVG---QSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVN 190 (427)
T ss_pred HHHHHHHHHHHhcc---CCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEE
Confidence 4444444321 110 12234555553211100001135678888899998774
No 351
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.05 E-value=5.8e+02 Score=22.70 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=34.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETL 88 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~ 88 (252)
..+.++|.....--+...++...+.+++ .|++++++++.+..
T Consensus 38 ~P~Laii~vg~d~aS~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 79 (287)
T PRK14176 38 TPGLATILVGDDPASKMYVRLKHKACER-VGIRAEDQFLPADT 79 (287)
T ss_pred CCeEEEEEECCCcchHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 3477788777777778888899999988 89999999998753
No 352
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=20.02 E-value=2e+02 Score=24.55 Aligned_cols=44 Identities=11% Similarity=-0.013 Sum_probs=23.4
Q ss_pred hhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCC
Q 040588 112 DLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQ 164 (252)
Q Consensus 112 ~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~ 164 (252)
.+.++|.+++-.++=. .+..+++++..+ .-+-|.+..+++....
T Consensus 47 ~~~~~dil~VeG~i~~-----~~~~~~~~~~~~----~~~ak~vVA~GtCA~~ 90 (228)
T TIGR03294 47 EIPEMDVALVEGSVCL-----QDEHSLEEIKEL----REKAKVVVALGACAAT 90 (228)
T ss_pred cCCCccEEEEeCCCCC-----CccHHHHHHHHH----hccCCEEEEeeccccc
Confidence 3456898887766621 122244444321 2244667777776543
Done!