Query 040588
Match_columns 252
No_of_seqs 264 out of 1900
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:48:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5l_A Trp repressor binding p 100.0 4.3E-32 1.5E-36 225.4 19.6 197 44-246 3-200 (200)
2 3b6i_A Flavoprotein WRBA; flav 100.0 7.2E-31 2.5E-35 217.7 23.0 195 46-246 1-198 (198)
3 2zki_A 199AA long hypothetical 100.0 2.3E-30 7.9E-35 215.1 19.4 194 46-248 4-198 (199)
4 1ydg_A Trp repressor binding p 100.0 3.5E-30 1.2E-34 216.2 17.3 194 45-248 5-204 (211)
5 3d7n_A Flavodoxin, WRBA-like p 100.0 8.4E-30 2.9E-34 211.7 17.2 184 45-249 5-192 (193)
6 2ark_A Flavodoxin; FMN, struct 100.0 4.7E-27 1.6E-31 194.2 18.8 167 46-248 4-172 (188)
7 3hly_A Flavodoxin-like domain; 99.9 1.7E-26 5.9E-31 186.6 16.2 147 47-246 1-147 (161)
8 3fni_A Putative diflavin flavo 99.9 7.4E-26 2.5E-30 182.7 15.6 146 46-244 4-150 (159)
9 5nul_A Flavodoxin; electron tr 99.9 9.1E-25 3.1E-29 171.3 12.9 135 49-239 1-137 (138)
10 1sqs_A Conserved hypothetical 99.9 2.1E-24 7.1E-29 185.1 14.3 169 46-244 1-180 (242)
11 3f6r_A Flavodoxin; FMN binding 99.9 1.9E-24 6.6E-29 171.4 12.7 143 46-240 1-147 (148)
12 2vzf_A NADH-dependent FMN redu 99.9 2.9E-24 9.8E-29 178.8 10.5 174 46-245 2-179 (197)
13 2q62_A ARSH; alpha/beta, flavo 99.9 1.1E-22 3.7E-27 175.3 19.3 185 40-248 28-215 (247)
14 2fzv_A Putative arsenical resi 99.9 8.2E-23 2.8E-27 178.5 17.3 181 44-247 56-239 (279)
15 2fz5_A Flavodoxin; alpha/beta 99.9 5.9E-23 2E-27 160.1 13.0 133 49-239 2-136 (137)
16 2q9u_A A-type flavoprotein; fl 99.9 5.9E-23 2E-27 188.2 14.9 156 45-251 255-413 (414)
17 1f4p_A Flavodoxin; electron tr 99.9 4.1E-23 1.4E-27 163.4 10.9 141 47-239 1-145 (147)
18 1rtt_A Conserved hypothetical 99.9 8.5E-23 2.9E-27 169.0 12.4 175 46-244 6-185 (193)
19 1rli_A Trp repressor binding p 99.9 1E-23 3.4E-28 172.6 6.4 166 46-239 3-183 (184)
20 3gfs_A FMN-dependent NADPH-azo 99.9 7.1E-23 2.4E-27 166.9 10.4 167 47-243 1-169 (174)
21 3fvw_A Putative NAD(P)H-depend 99.9 1.2E-22 4.2E-27 168.5 10.4 177 45-245 1-186 (192)
22 2ohh_A Type A flavoprotein FPR 99.9 1.7E-21 5.8E-26 177.6 14.7 150 44-242 254-403 (404)
23 4hs4_A Chromate reductase; tri 99.9 2.3E-21 8E-26 161.8 13.8 181 44-246 4-189 (199)
24 3k1y_A Oxidoreductase; structu 99.9 1.6E-21 5.5E-26 161.8 12.0 171 45-244 10-189 (191)
25 1t0i_A YLR011WP; FMN binding p 99.9 8.7E-22 3E-26 162.5 9.1 132 47-188 1-149 (191)
26 1czn_A Flavodoxin; FMN binding 99.9 1.7E-20 5.7E-25 151.8 16.0 162 47-240 1-166 (169)
27 1obo_A Flavodoxin; electron tr 99.9 3.5E-20 1.2E-24 149.9 17.1 163 47-241 2-167 (169)
28 2hpv_A FMN-dependent NADH-azor 99.9 9.4E-22 3.2E-26 164.3 8.1 170 46-239 1-206 (208)
29 4dik_A Flavoprotein; TM0755, e 99.8 5.7E-21 1.9E-25 175.7 13.4 144 46-237 265-408 (410)
30 3svl_A Protein YIEF; E. coli C 99.8 3.9E-21 1.3E-25 159.7 11.1 180 46-246 4-188 (193)
31 1ykg_A SIR-FP, sulfite reducta 99.8 6.1E-21 2.1E-25 154.7 11.3 150 43-244 6-156 (167)
32 1t5b_A Acyl carrier protein ph 99.8 6.4E-21 2.2E-25 157.8 11.4 142 46-189 1-171 (201)
33 3s2y_A Chromate reductase; ura 99.7 1.5E-22 5.3E-27 169.0 0.0 180 45-246 5-189 (199)
34 1e5d_A Rubredoxin\:oxygen oxid 99.8 4.8E-20 1.7E-24 167.8 15.5 148 46-244 252-399 (402)
35 1ycg_A Nitric oxide reductase; 99.8 4.6E-20 1.6E-24 167.8 14.2 145 46-241 251-396 (398)
36 3u7r_A NADPH-dependent FMN red 99.8 1.5E-19 5E-24 149.8 14.9 179 45-244 1-181 (190)
37 1ag9_A Flavodoxin; electron tr 99.8 3.4E-19 1.2E-23 145.4 15.8 163 47-242 1-168 (175)
38 2wc1_A Flavodoxin; electron tr 99.8 5.4E-20 1.9E-24 150.9 11.0 165 46-242 1-177 (182)
39 3klb_A Putative flavoprotein; 99.8 1.6E-19 5.6E-24 145.7 13.6 128 43-187 1-139 (162)
40 1yob_A Flavodoxin 2, flavodoxi 99.8 2.8E-19 9.5E-24 146.4 13.6 162 47-240 1-174 (179)
41 2hna_A Protein MIOC, flavodoxi 99.8 2.8E-21 9.5E-26 153.3 0.7 141 46-241 1-146 (147)
42 3lcm_A SMU.1420, putative oxid 99.8 7.1E-19 2.4E-23 146.2 13.2 139 47-188 1-159 (196)
43 4ici_A Putative flavoprotein; 99.8 9.1E-19 3.1E-23 142.7 13.4 128 43-187 10-148 (171)
44 1d4a_A DT-diaphorase, quinone 99.8 2.7E-19 9.4E-24 156.1 10.2 117 46-164 2-151 (273)
45 3r6w_A FMN-dependent NADH-azor 99.8 3.2E-19 1.1E-23 149.7 10.2 142 46-189 1-181 (212)
46 3f2v_A General stress protein 99.8 1.3E-18 4.5E-23 144.3 13.4 132 46-189 1-147 (192)
47 3edo_A Flavoprotein, putative 99.8 8.7E-19 3E-23 139.8 10.6 130 45-188 2-138 (151)
48 2fcr_A Flavodoxin; electron tr 99.8 3.6E-18 1.2E-22 139.0 14.4 161 48-240 1-170 (173)
49 3p0r_A Azoreductase; structura 99.8 2.5E-19 8.7E-24 150.6 6.2 142 45-188 3-179 (211)
50 1bvy_F Protein (cytochrome P45 99.8 1.3E-18 4.4E-23 144.3 9.6 148 43-242 18-167 (191)
51 2amj_A Modulator of drug activ 99.8 1.5E-17 5.1E-22 139.1 16.2 126 47-189 13-176 (204)
52 2bmv_A Flavodoxin; electron tr 99.8 4.3E-18 1.5E-22 137.2 11.3 154 46-239 1-161 (164)
53 3u7i_A FMN-dependent NADH-azor 99.7 3.1E-17 1.1E-21 139.1 13.7 173 45-241 3-213 (223)
54 3rpe_A MDAB, modulator of drug 99.7 4.3E-17 1.5E-21 137.6 14.4 127 46-189 25-189 (218)
55 3tem_A Ribosyldihydronicotinam 99.7 9.6E-18 3.3E-22 142.7 10.5 115 47-164 2-150 (228)
56 4gi5_A Quinone reductase; prot 99.7 3.9E-17 1.3E-21 142.7 9.7 124 39-164 15-178 (280)
57 3ha2_A NADPH-quinone reductase 99.6 3.6E-15 1.2E-19 122.1 13.6 122 47-189 1-139 (177)
58 3l9w_A Glutathione-regulated p 99.6 1.6E-15 5.5E-20 139.5 9.7 162 46-243 236-410 (413)
59 2bpo_A CPR, P450R, NADPH-cytoc 99.6 2.6E-14 9E-19 139.0 14.0 151 45-244 48-201 (682)
60 3hr4_A Nitric oxide synthase, 99.5 5.5E-14 1.9E-18 118.5 13.4 119 46-189 40-159 (219)
61 2xod_A NRDI protein, NRDI; fla 99.4 4.9E-13 1.7E-17 102.0 8.3 115 49-238 1-117 (119)
62 3qe2_A CPR, P450R, NADPH--cyto 99.3 7.3E-12 2.5E-16 120.6 12.3 122 47-189 19-143 (618)
63 1tll_A Nitric-oxide synthase, 99.3 8.9E-11 3.1E-15 114.2 15.8 148 46-243 11-199 (688)
64 1rlj_A NRDI protein; flavoprot 99.0 1.2E-09 4E-14 85.7 7.4 121 46-240 8-130 (139)
65 3n3a_C Protein NRDI; ribonucle 98.6 4.8E-08 1.6E-12 77.3 6.7 88 113-239 56-150 (153)
66 2kyr_A Fructose-like phosphotr 96.7 0.003 1E-07 47.0 5.8 85 43-160 2-88 (111)
67 1e2b_A Enzyme IIB-cellobiose; 96.3 0.0076 2.6E-07 44.4 5.9 58 45-124 2-59 (106)
68 1tvm_A PTS system, galactitol- 96.3 0.0097 3.3E-07 44.3 6.3 59 45-126 20-80 (113)
69 2m1z_A LMO0427 protein; homolo 96.2 0.0085 2.9E-07 44.2 5.8 65 46-126 2-68 (106)
70 3nbm_A PTS system, lactose-spe 95.9 0.016 5.4E-07 42.9 6.0 83 44-160 4-86 (108)
71 2l2q_A PTS system, cellobiose- 95.2 0.019 6.4E-07 42.3 4.2 58 46-125 4-61 (109)
72 3czc_A RMPB; alpha/beta sandwi 94.8 0.021 7.1E-07 42.2 3.5 59 46-125 18-77 (110)
73 2r48_A Phosphotransferase syst 94.8 0.046 1.6E-06 40.2 5.3 81 46-160 2-84 (106)
74 2r4q_A Phosphotransferase syst 94.5 0.039 1.3E-06 40.6 4.3 81 46-160 2-84 (106)
75 1vkr_A Mannitol-specific PTS s 93.6 0.092 3.1E-06 39.7 4.8 38 44-82 11-49 (125)
76 2iuf_A Catalase; oxidoreductas 93.1 0.76 2.6E-05 44.3 11.4 123 14-160 497-640 (688)
77 3kkl_A Probable chaperone prot 91.5 0.52 1.8E-05 39.5 7.3 42 44-86 1-52 (244)
78 3rht_A (gatase1)-like protein; 89.3 0.34 1.2E-05 41.2 4.3 56 45-123 3-58 (259)
79 3ej6_A Catalase-3; heme, hydro 89.0 2.4 8.1E-05 40.9 10.3 122 14-160 505-638 (688)
80 3efe_A THIJ/PFPI family protei 88.6 0.71 2.4E-05 37.5 5.7 103 43-160 2-113 (212)
81 4gdh_A DJ-1, uncharacterized p 88.4 0.28 9.7E-06 39.5 3.1 41 43-86 1-41 (194)
82 4e5v_A Putative THUA-like prot 88.1 4.1 0.00014 34.8 10.4 80 44-141 2-83 (281)
83 3ttv_A Catalase HPII; heme ori 84.6 2.6 8.8E-05 41.0 7.9 122 22-162 577-702 (753)
84 4gud_A Imidazole glycerol phos 81.4 2.2 7.7E-05 34.2 5.4 45 47-122 3-47 (211)
85 2fgx_A Putative thioredoxin; N 81.1 3.2 0.00011 30.1 5.6 45 40-86 23-68 (107)
86 3n7t_A Macrophage binding prot 80.2 4.8 0.00016 33.6 7.1 40 46-86 9-58 (247)
87 2iuy_A Avigt4, glycosyltransfe 78.4 2.1 7.1E-05 36.4 4.5 42 44-86 1-57 (342)
88 3l3b_A ES1 family protein; ssg 78.2 5.2 0.00018 33.3 6.8 40 46-86 23-65 (242)
89 2gk3_A Putative cytoplasmic pr 77.6 2.9 9.9E-05 35.0 5.0 14 110-123 72-85 (256)
90 3qvo_A NMRA family protein; st 77.3 23 0.00078 28.3 10.4 30 111-142 84-113 (236)
91 1u9c_A APC35852; structural ge 76.9 8.6 0.00029 30.9 7.7 103 46-160 5-130 (224)
92 1sy7_A Catalase 1; heme oxidat 76.8 8.7 0.0003 37.2 8.6 129 15-160 501-636 (715)
93 1rw7_A YDR533CP; alpha-beta sa 76.4 6.6 0.00023 32.4 6.9 41 45-86 2-52 (243)
94 1t0b_A THUA-like protein; treh 76.1 16 0.00055 30.4 9.3 78 46-141 7-94 (252)
95 3m3p_A Glutamine amido transfe 75.0 4.5 0.00015 33.8 5.5 56 45-124 2-58 (250)
96 3c48_A Predicted glycosyltrans 74.6 2.4 8.2E-05 37.3 3.9 46 40-86 14-69 (438)
97 3ju3_A Probable 2-oxoacid ferr 74.4 4.3 0.00015 29.8 4.6 37 48-89 15-52 (118)
98 4huj_A Uncharacterized protein 74.3 3.2 0.00011 33.6 4.3 81 43-141 20-101 (220)
99 2vrn_A Protease I, DR1199; cys 74.0 8.8 0.0003 30.0 6.8 102 44-160 7-116 (190)
100 2rk3_A Protein DJ-1; parkinson 73.9 5.8 0.0002 31.4 5.7 100 45-160 2-107 (197)
101 2a9v_A GMP synthase; structura 73.3 4.9 0.00017 32.5 5.2 50 45-122 12-61 (212)
102 3s40_A Diacylglycerol kinase; 73.1 3.7 0.00013 35.1 4.6 41 45-86 7-49 (304)
103 3l4e_A Uncharacterized peptida 73.0 5.2 0.00018 32.4 5.2 64 47-136 28-96 (206)
104 1vhq_A Enhancing lycopene bios 72.9 9.9 0.00034 31.0 7.0 40 46-86 6-48 (232)
105 3doj_A AT3G25530, dehydrogenas 72.6 41 0.0014 28.4 11.2 125 38-190 13-140 (310)
106 3mc3_A DSRE/DSRF-like family p 72.3 7.1 0.00024 29.1 5.6 45 42-87 11-57 (134)
107 2gek_A Phosphatidylinositol ma 71.6 4.6 0.00016 34.8 4.9 46 41-87 15-63 (406)
108 3ot1_A 4-methyl-5(B-hydroxyeth 71.0 6.2 0.00021 31.6 5.3 101 45-161 8-113 (208)
109 4eg0_A D-alanine--D-alanine li 70.4 10 0.00036 32.1 6.9 42 44-86 11-55 (317)
110 2vpi_A GMP synthase; guanine m 69.2 5.6 0.00019 32.4 4.7 34 47-86 25-58 (218)
111 3uk7_A Class I glutamine amido 68.7 7.4 0.00025 34.4 5.7 38 45-85 11-48 (396)
112 2ab0_A YAJL; DJ-1/THIJ superfa 68.0 7.2 0.00025 31.1 5.1 96 46-160 2-107 (205)
113 1ka9_H Imidazole glycerol phos 68.0 8.5 0.00029 30.5 5.5 48 46-124 2-49 (200)
114 2ct6_A SH3 domain-binding glut 67.6 11 0.00037 27.0 5.5 45 41-86 2-48 (111)
115 1n57_A Chaperone HSP31, protei 67.2 29 0.00098 29.4 9.0 41 113-160 143-186 (291)
116 4e08_A DJ-1 beta; flavodoxin-l 67.0 11 0.00036 29.6 5.8 99 46-160 5-108 (190)
117 4hcj_A THIJ/PFPI domain protei 66.8 15 0.00051 28.8 6.6 80 66-160 26-109 (177)
118 3r5x_A D-alanine--D-alanine li 65.6 15 0.00051 30.8 6.9 40 46-86 3-45 (307)
119 3f5d_A Protein YDEA; unknow pr 65.6 11 0.00039 30.2 5.8 39 114-160 62-101 (206)
120 2x6q_A Trehalose-synthase TRET 64.3 9.9 0.00034 33.1 5.6 42 44-86 38-80 (416)
121 3k96_A Glycerol-3-phosphate de 64.1 28 0.00096 30.4 8.5 27 111-143 95-121 (356)
122 1fy2_A Aspartyl dipeptidase; s 62.3 13 0.00044 30.4 5.6 66 46-137 31-97 (229)
123 1qdl_B Protein (anthranilate s 62.0 21 0.0007 28.1 6.7 52 47-125 1-56 (195)
124 2pv7_A T-protein [includes: ch 61.8 27 0.00091 29.4 7.8 66 46-142 21-86 (298)
125 2h78_A Hibadh, 3-hydroxyisobut 61.7 42 0.0014 28.0 9.0 117 45-190 2-122 (302)
126 1o1y_A Conserved hypothetical 61.7 18 0.00062 29.6 6.5 53 47-123 13-65 (239)
127 3pdu_A 3-hydroxyisobutyrate de 61.4 48 0.0016 27.5 9.2 116 46-190 1-120 (287)
128 1oi4_A Hypothetical protein YH 60.8 14 0.00047 29.1 5.4 38 46-86 23-60 (193)
129 2nv0_A Glutamine amidotransfer 60.4 12 0.00039 29.5 4.9 12 112-123 35-46 (196)
130 3l7n_A Putative uncharacterize 58.5 15 0.00053 29.9 5.5 52 47-122 1-52 (236)
131 1wl8_A GMP synthase [glutamine 56.2 61 0.0021 25.0 8.5 31 49-85 3-33 (189)
132 3fse_A Two-domain protein cont 55.9 19 0.00064 31.9 5.8 100 45-160 9-113 (365)
133 3l18_A Intracellular protease 54.1 21 0.00073 27.0 5.3 94 47-160 3-103 (168)
134 3abi_A Putative uncharacterize 53.5 15 0.00052 32.0 4.9 29 110-140 72-100 (365)
135 2c92_A 6,7-dimethyl-8-ribityll 53.2 23 0.00079 27.6 5.3 41 46-87 17-59 (160)
136 2k8s_A Thioredoxin; dimer, str 52.4 37 0.0013 22.0 5.7 38 48-86 3-40 (80)
137 4gwg_A 6-phosphogluconate dehy 51.5 93 0.0032 28.4 10.0 123 45-191 3-129 (484)
138 3fro_A GLGA glycogen synthase; 50.8 14 0.00046 32.0 4.1 39 46-85 2-44 (439)
139 3g0o_A 3-hydroxyisobutyrate de 50.6 1.1E+02 0.0036 25.6 9.7 117 46-190 7-127 (303)
140 3cne_A Putative protease I; st 49.6 54 0.0018 24.9 7.1 41 113-160 64-112 (175)
141 3c24_A Putative oxidoreductase 49.6 36 0.0012 28.2 6.4 78 46-142 11-88 (286)
142 3ax6_A Phosphoribosylaminoimid 49.3 38 0.0013 29.3 6.8 34 46-86 1-34 (380)
143 2qv7_A Diacylglycerol kinase D 49.1 19 0.00067 30.9 4.8 40 45-85 23-64 (337)
144 3en0_A Cyanophycinase; serine 49.0 10 0.00035 32.5 2.9 64 43-123 53-118 (291)
145 4grd_A N5-CAIR mutase, phospho 47.8 37 0.0013 26.8 5.7 42 37-81 3-44 (173)
146 4ezb_A Uncharacterized conserv 47.4 57 0.0019 27.7 7.5 116 45-189 23-145 (317)
147 4dll_A 2-hydroxy-3-oxopropiona 47.1 80 0.0027 26.7 8.4 118 45-190 30-149 (320)
148 3ew7_A LMO0794 protein; Q8Y8U8 47.1 45 0.0015 25.8 6.4 31 111-141 57-90 (221)
149 3noq_A THIJ/PFPI family protei 46.9 30 0.001 28.1 5.4 86 45-142 4-94 (231)
150 3ojo_A CAP5O; rossmann fold, c 46.8 7.5 0.00026 35.3 1.8 105 2-124 264-383 (431)
151 1ejb_A Lumazine synthase; anal 45.2 55 0.0019 25.6 6.3 41 46-87 16-60 (168)
152 2raf_A Putative dinucleotide-b 45.2 60 0.0021 25.6 6.9 61 45-142 18-78 (209)
153 1yb4_A Tartronic semialdehyde 45.1 1.3E+02 0.0043 24.7 10.5 63 111-189 54-120 (295)
154 2iw1_A Lipopolysaccharide core 45.0 16 0.00055 30.8 3.6 38 47-85 1-40 (374)
155 2rcy_A Pyrroline carboxylate r 44.5 53 0.0018 26.6 6.6 16 111-126 54-69 (262)
156 1iow_A DD-ligase, DDLB, D-ALA\ 44.2 26 0.00088 29.0 4.7 40 46-86 2-44 (306)
157 2i0f_A 6,7-dimethyl-8-ribityll 44.1 42 0.0014 26.0 5.4 40 47-87 13-53 (157)
158 3uk7_A Class I glutamine amido 43.9 30 0.001 30.4 5.2 39 44-85 203-241 (396)
159 2iya_A OLEI, oleandomycin glyc 43.3 21 0.00072 31.2 4.2 40 44-85 10-49 (424)
160 1f0k_A MURG, UDP-N-acetylgluco 42.8 34 0.0012 28.8 5.3 38 47-86 7-44 (364)
161 1qv9_A F420-dependent methylen 42.2 99 0.0034 25.8 7.6 93 45-161 2-100 (283)
162 1gpw_B Amidotransferase HISH; 42.0 31 0.0011 27.0 4.6 46 47-124 1-51 (201)
163 3e8x_A Putative NAD-dependent 41.5 1.3E+02 0.0043 23.6 10.7 74 46-127 21-96 (236)
164 1w4r_A Thymidine kinase; type 41.2 41 0.0014 27.0 5.2 109 38-161 11-126 (195)
165 1di0_A Lumazine synthase; tran 41.1 28 0.00095 27.0 4.0 42 45-87 9-54 (158)
166 2khp_A Glutaredoxin; thioredox 41.0 59 0.002 21.4 5.5 36 46-86 4-40 (92)
167 1rzu_A Glycogen synthase 1; gl 40.8 27 0.00092 31.0 4.5 38 47-85 1-43 (485)
168 1t1v_A SH3BGRL3, SH3 domain-bi 40.6 44 0.0015 22.5 4.7 37 46-86 1-42 (93)
169 1e4e_A Vancomycin/teicoplanin 40.5 43 0.0015 28.6 5.6 40 46-86 3-45 (343)
170 3tri_A Pyrroline-5-carboxylate 40.1 40 0.0014 28.1 5.2 70 45-126 2-74 (280)
171 3ia7_A CALG4; glycosysltransfe 40.1 27 0.00093 29.8 4.3 39 44-84 2-40 (402)
172 1jx7_A Hypothetical protein YC 39.8 28 0.00097 24.5 3.7 40 46-86 1-44 (117)
173 2qzs_A Glycogen synthase; glyc 39.8 26 0.00088 31.1 4.2 38 47-85 1-43 (485)
174 2r60_A Glycosyl transferase, g 39.8 28 0.00096 31.1 4.5 40 46-86 7-60 (499)
175 3lkv_A Uncharacterized conserv 39.6 45 0.0015 27.9 5.5 40 46-86 140-179 (302)
176 4e21_A 6-phosphogluconate dehy 39.4 79 0.0027 27.5 7.2 116 46-191 22-141 (358)
177 2qs7_A Uncharacterized protein 38.9 44 0.0015 25.0 4.9 40 46-86 7-46 (144)
178 3nq4_A 6,7-dimethyl-8-ribityll 38.9 81 0.0028 24.3 6.3 40 47-87 13-57 (156)
179 3dhn_A NAD-dependent epimerase 38.8 42 0.0014 26.2 5.0 33 46-84 4-36 (227)
180 4fzr_A SSFS6; structural genom 38.7 17 0.00059 31.4 2.8 39 44-84 13-51 (398)
181 1ego_A Glutaredoxin; electron 38.7 30 0.001 22.4 3.5 39 47-85 1-39 (85)
182 3oti_A CALG3; calicheamicin, T 38.5 18 0.00063 31.3 2.9 43 40-84 13-56 (398)
183 3uow_A GMP synthetase; structu 38.3 58 0.002 30.3 6.5 37 43-85 4-40 (556)
184 2lci_A Protein OR36; structura 38.2 1E+02 0.0035 21.7 10.4 104 47-186 1-104 (134)
185 1nbw_B Glycerol dehydratase re 38.0 31 0.0011 25.3 3.7 36 50-86 8-43 (117)
186 3qha_A Putative oxidoreductase 37.9 1.7E+02 0.0059 24.2 11.1 114 47-190 16-130 (296)
187 3i12_A D-alanine-D-alanine lig 37.8 49 0.0017 28.6 5.6 41 45-86 2-45 (364)
188 3k3p_A D-alanine--D-alanine li 37.7 46 0.0016 29.3 5.5 41 45-86 36-79 (383)
189 2c1l_A Restriction endonucleas 37.7 49 0.0017 28.0 5.1 35 48-87 66-103 (358)
190 1w85_B Pyruvate dehydrogenase 37.4 39 0.0013 28.9 4.8 75 48-140 203-278 (324)
191 2l17_A Synarsc, arsenate reduc 37.3 25 0.00084 26.1 3.1 27 44-73 2-30 (134)
192 3b1f_A Putative prephenate deh 37.0 94 0.0032 25.5 7.1 25 112-142 63-87 (290)
193 1jvn_A Glutamine, bifunctional 36.9 40 0.0014 31.4 5.1 52 44-124 2-53 (555)
194 1gpm_A GMP synthetase, XMP ami 36.6 45 0.0015 30.8 5.4 33 46-85 7-40 (525)
195 2ew2_A 2-dehydropantoate 2-red 36.5 46 0.0016 27.5 5.1 24 113-142 72-95 (316)
196 3mw8_A Uroporphyrinogen-III sy 36.1 12 0.00042 30.3 1.3 26 110-142 45-70 (240)
197 2i87_A D-alanine-D-alanine lig 36.1 46 0.0016 28.7 5.1 41 45-86 2-45 (364)
198 1gwn_A RHO-related GTP-binding 35.6 1.4E+02 0.0048 23.0 7.6 45 111-160 95-140 (205)
199 3ic4_A Glutaredoxin (GRX-1); s 35.4 37 0.0013 22.5 3.6 35 46-86 11-46 (92)
200 3ius_A Uncharacterized conserv 35.3 1.3E+02 0.0046 24.1 7.8 86 45-142 4-89 (286)
201 2djj_A PDI, protein disulfide- 35.2 1.1E+02 0.0036 20.9 7.2 43 29-71 8-51 (121)
202 3pnx_A Putative sulfurtransfer 35.1 62 0.0021 25.0 5.2 42 43-85 1-42 (160)
203 3llv_A Exopolyphosphatase-rela 35.0 29 0.001 25.2 3.2 33 46-85 6-38 (141)
204 2p5s_A RAS and EF-hand domain 34.7 96 0.0033 23.5 6.4 47 110-160 95-141 (199)
205 3h5l_A Putative branched-chain 34.2 2.2E+02 0.0075 24.3 9.9 76 46-142 164-241 (419)
206 3rsc_A CALG2; TDP, enediyne, s 34.0 24 0.00081 30.6 2.9 41 42-84 16-56 (415)
207 3e5n_A D-alanine-D-alanine lig 33.8 61 0.0021 28.4 5.6 41 45-86 21-64 (386)
208 3ups_A Iojap-like protein; PSI 33.1 77 0.0026 23.8 5.2 55 59-142 18-72 (136)
209 3soz_A ORF 245 protein, cytopl 32.8 22 0.00075 29.7 2.3 45 64-124 35-79 (248)
210 2ozl_B PDHE1-B, pyruvate dehyd 32.8 54 0.0019 28.4 5.0 36 48-87 218-253 (341)
211 3se7_A VANA; alpha-beta struct 32.6 68 0.0023 27.4 5.6 41 45-86 2-45 (346)
212 4got_A Methionine-binding lipo 32.2 68 0.0023 26.7 5.3 40 46-87 4-43 (249)
213 3l6d_A Putative oxidoreductase 32.1 2E+02 0.0067 24.0 8.4 117 45-190 8-126 (306)
214 2obx_A DMRL synthase 1, 6,7-di 31.9 64 0.0022 24.9 4.7 40 47-87 12-55 (157)
215 1q7r_A Predicted amidotransfer 31.6 96 0.0033 24.6 6.1 12 112-123 57-68 (219)
216 1r7h_A NRDH-redoxin; thioredox 31.4 91 0.0031 19.2 4.9 34 47-86 1-35 (75)
217 3ggo_A Prephenate dehydrogenas 31.0 1.6E+02 0.0056 24.8 7.8 71 45-126 32-105 (314)
218 4ffl_A PYLC; amino acid, biosy 31.0 56 0.0019 28.0 4.8 34 46-86 1-34 (363)
219 3tqi_A GMP synthase [glutamine 30.9 87 0.003 28.9 6.3 32 47-84 11-42 (527)
220 3otg_A CALG1; calicheamicin, T 30.7 31 0.0011 29.7 3.1 42 42-85 16-57 (412)
221 2dj3_A Protein disulfide-isome 30.6 1.2E+02 0.0042 21.1 6.0 60 26-85 5-66 (133)
222 1ehi_A LMDDL2, D-alanine:D-lac 30.3 54 0.0018 28.5 4.6 40 46-86 3-46 (377)
223 2iss_D Glutamine amidotransfer 30.1 1E+02 0.0035 24.1 6.0 46 46-123 20-65 (208)
224 2vns_A Metalloreductase steap3 30.1 38 0.0013 26.9 3.3 68 45-126 27-94 (215)
225 1umd_B E1-beta, 2-OXO acid deh 30.0 47 0.0016 28.4 4.1 75 48-140 204-279 (324)
226 4es6_A Uroporphyrinogen-III sy 29.9 22 0.00075 29.1 1.9 26 111-143 54-79 (254)
227 2d1p_B TUSC, hypothetical UPF0 29.8 59 0.002 23.3 4.1 40 46-87 1-43 (119)
228 3r6d_A NAD-dependent epimerase 29.7 1.9E+02 0.0065 22.2 12.0 28 111-142 69-96 (221)
229 1hqk_A 6,7-dimethyl-8-ribityll 29.7 1E+02 0.0035 23.6 5.5 40 47-87 13-56 (154)
230 3oy2_A Glycosyltransferase B73 29.6 76 0.0026 27.1 5.5 38 47-86 1-40 (413)
231 3d54_D Phosphoribosylformylgly 29.6 67 0.0023 25.1 4.8 34 45-83 1-34 (213)
232 1kjq_A GART 2, phosphoribosylg 29.4 86 0.0029 26.9 5.8 35 45-86 10-44 (391)
233 2gf9_A RAS-related protein RAB 29.4 1.7E+02 0.006 21.6 8.9 47 110-160 89-135 (189)
234 3t1o_A Gliding protein MGLA; G 29.3 1.7E+02 0.0058 21.5 7.9 26 46-72 14-39 (198)
235 1c2y_A Protein (lumazine synth 29.2 61 0.0021 25.0 4.2 40 47-87 14-56 (156)
236 3re1_A Uroporphyrinogen-III sy 29.2 20 0.00068 29.8 1.5 26 111-143 62-87 (269)
237 1u0t_A Inorganic polyphosphate 29.0 48 0.0016 28.1 4.0 36 46-82 4-39 (307)
238 1u6t_A SH3 domain-binding glut 29.0 81 0.0028 23.1 4.7 37 49-86 1-40 (121)
239 3r75_A Anthranilate/para-amino 29.0 2.1E+02 0.0073 27.1 8.8 52 46-126 446-498 (645)
240 2iyf_A OLED, oleandomycin glyc 28.9 29 0.001 30.2 2.7 40 44-85 5-44 (430)
241 3tqt_A D-alanine--D-alanine li 28.9 88 0.003 27.3 5.8 42 45-87 3-47 (372)
242 3rh0_A Arsenate reductase; oxi 28.8 49 0.0017 25.1 3.6 35 44-80 18-52 (148)
243 2h2w_A Homoserine O-succinyltr 28.5 2.1E+02 0.0071 24.5 7.9 88 45-142 46-144 (312)
244 3bc1_A RAS-related protein RAB 28.4 1.5E+02 0.0052 21.7 6.5 47 111-160 89-135 (195)
245 2klx_A Glutaredoxin; thioredox 28.3 57 0.0019 21.4 3.5 35 46-85 4-39 (89)
246 2dwc_A PH0318, 433AA long hypo 28.1 80 0.0027 27.7 5.4 35 45-86 18-52 (433)
247 2ywj_A Glutamine amidotransfer 28.0 81 0.0028 24.1 4.9 12 112-123 34-45 (186)
248 2qgz_A Helicase loader, putati 27.9 72 0.0025 26.9 4.9 69 47-123 152-222 (308)
249 1rvv_A Riboflavin synthase; tr 27.6 1E+02 0.0036 23.6 5.3 40 47-87 13-56 (154)
250 1wwj_A Circadian clock protein 26.9 1.7E+02 0.0058 21.0 5.9 71 49-143 9-82 (105)
251 4f3y_A DHPR, dihydrodipicolina 26.7 1.5E+02 0.0051 24.7 6.6 53 113-183 71-123 (272)
252 3ic5_A Putative saccharopine d 26.5 46 0.0016 22.7 2.9 16 111-126 65-80 (118)
253 3k5i_A Phosphoribosyl-aminoimi 26.5 70 0.0024 28.1 4.7 33 46-86 24-56 (403)
254 2hy5_B Intracellular sulfur ox 26.5 94 0.0032 23.0 4.8 41 46-87 5-47 (136)
255 3okp_A GDP-mannose-dependent a 26.4 60 0.002 27.3 4.1 40 45-87 3-45 (394)
256 3pdi_A Nitrogenase MOFE cofact 26.4 2.7E+02 0.0094 25.1 8.8 36 148-191 328-363 (483)
257 3q3j_B RHO-related GTP-binding 26.3 2.2E+02 0.0076 21.8 7.8 46 110-160 93-139 (214)
258 3mos_A Transketolase, TK; thia 26.3 84 0.0029 29.6 5.4 75 48-140 500-576 (616)
259 3orq_A N5-carboxyaminoimidazol 26.3 1.2E+02 0.004 26.2 6.1 35 45-86 11-45 (377)
260 1h75_A Glutaredoxin-like prote 26.1 1.2E+02 0.0043 19.0 4.9 35 47-86 1-35 (81)
261 2an1_A Putative kinase; struct 26.0 40 0.0014 28.2 2.9 36 46-82 5-40 (292)
262 3fz4_A Putative arsenate reduc 25.6 1.1E+02 0.0037 22.0 4.9 34 50-87 5-38 (120)
263 2izz_A Pyrroline-5-carboxylate 25.4 1.9E+02 0.0067 24.2 7.3 26 111-142 80-105 (322)
264 2x0d_A WSAF; GT4 family, trans 25.3 1E+02 0.0034 27.1 5.5 40 45-86 45-89 (413)
265 3fwz_A Inner membrane protein 25.3 66 0.0023 23.4 3.7 15 112-126 68-82 (140)
266 4bas_A ADP-ribosylation factor 25.3 1.6E+02 0.0055 21.9 6.2 50 111-160 82-135 (199)
267 3pef_A 6-phosphogluconate dehy 24.9 2.8E+02 0.0096 22.5 9.0 116 47-190 2-120 (287)
268 1jay_A Coenzyme F420H2:NADP+ o 24.9 70 0.0024 24.8 4.0 26 111-142 60-85 (212)
269 3lvu_A ABC transporter, peripl 24.8 71 0.0024 25.7 4.2 37 48-85 129-165 (258)
270 3p2a_A Thioredoxin 2, putative 24.7 62 0.0021 23.4 3.5 57 26-84 36-93 (148)
271 1lss_A TRK system potassium up 24.6 70 0.0024 22.6 3.7 14 113-126 67-80 (140)
272 3ff4_A Uncharacterized protein 24.1 2E+02 0.007 20.7 6.2 106 45-188 3-110 (122)
273 3exr_A RMPD (hexulose-6-phosph 23.9 38 0.0013 27.4 2.3 31 115-145 189-220 (221)
274 3con_A GTPase NRAS; structural 23.8 2.2E+02 0.0075 21.0 7.9 47 111-160 88-134 (190)
275 2iz1_A 6-phosphogluconate dehy 23.6 2.6E+02 0.0089 25.1 8.1 59 115-189 68-127 (474)
276 1a9x_B Carbamoyl phosphate syn 23.4 97 0.0033 27.4 4.9 32 46-85 190-221 (379)
277 2g2q_A Glutaredoxin-2; thiored 23.4 1.3E+02 0.0044 22.2 4.7 35 46-85 1-36 (124)
278 1zbd_A Rabphilin-3A; G protein 23.3 2.2E+02 0.0075 21.3 6.7 47 110-160 75-121 (203)
279 2yfk_A Aspartate/ornithine car 23.3 4E+02 0.014 23.8 9.0 38 150-187 186-223 (418)
280 2vdj_A Homoserine O-succinyltr 23.2 3.1E+02 0.011 23.2 8.0 87 46-142 35-132 (301)
281 3msz_A Glutaredoxin 1; alpha-b 23.2 1.5E+02 0.0051 18.9 5.0 34 47-85 4-37 (89)
282 3m2p_A UDP-N-acetylglucosamine 22.9 2E+02 0.0068 23.5 6.7 72 46-126 2-73 (311)
283 2i2c_A Probable inorganic poly 22.9 86 0.003 26.0 4.4 31 47-79 1-31 (272)
284 2p4q_A 6-phosphogluconate dehy 22.9 3.2E+02 0.011 24.8 8.5 60 115-190 74-134 (497)
285 2p6p_A Glycosyl transferase; X 22.8 71 0.0024 27.1 3.9 37 47-85 1-37 (384)
286 3qsg_A NAD-binding phosphogluc 22.8 3.3E+02 0.011 22.6 10.4 117 45-190 23-144 (312)
287 3ewn_A THIJ/PFPI family protei 22.8 2.3E+02 0.0078 23.1 7.0 88 46-142 23-114 (253)
288 3ry3_A Putative solute-binding 22.5 1.7E+02 0.006 26.4 6.7 37 48-85 361-397 (528)
289 3h4t_A Glycosyltransferase GTF 22.4 74 0.0025 27.6 4.1 37 47-85 1-37 (404)
290 3tsa_A SPNG, NDP-rhamnosyltran 22.4 50 0.0017 28.2 2.9 36 47-84 2-37 (391)
291 3lft_A Uncharacterized protein 22.3 1.2E+02 0.0042 24.6 5.2 39 46-85 133-171 (295)
292 3eeq_A Putative cobalamin bios 22.1 84 0.0029 27.3 4.2 55 48-125 10-64 (336)
293 3jvi_A Protein tyrosine phosph 22.0 46 0.0016 25.5 2.3 29 43-72 1-29 (161)
294 2vxo_A GMP synthase [glutamine 22.0 1.6E+02 0.0055 28.2 6.5 33 46-85 29-62 (697)
295 2z04_A Phosphoribosylaminoimid 21.9 78 0.0027 27.0 4.0 34 46-86 1-34 (365)
296 3q2o_A Phosphoribosylaminoimid 21.7 1.7E+02 0.0059 25.1 6.3 34 46-86 14-47 (389)
297 1fo5_A Thioredoxin; disulfide 21.7 71 0.0024 20.2 3.0 39 48-86 5-44 (85)
298 4amg_A Snogd; transferase, pol 21.6 55 0.0019 27.9 2.9 37 46-84 22-58 (400)
299 3u80_A 3-dehydroquinate dehydr 21.6 1.1E+02 0.0039 23.4 4.3 76 45-137 3-91 (151)
300 3ot5_A UDP-N-acetylglucosamine 21.6 72 0.0025 28.0 3.8 46 35-82 16-62 (403)
301 2qh8_A Uncharacterized protein 21.5 1.4E+02 0.0049 24.4 5.5 39 46-85 140-178 (302)
302 2bfd_B 2-oxoisovalerate dehydr 21.4 71 0.0024 27.6 3.6 37 48-88 221-258 (342)
303 2g5c_A Prephenate dehydrogenas 21.3 1.9E+02 0.0065 23.4 6.2 16 111-126 57-73 (281)
304 2qpq_A Protein BUG27; alpha/be 21.3 62 0.0021 27.4 3.2 36 50-85 12-47 (301)
305 3cwc_A Putative glycerate kina 21.2 72 0.0025 28.4 3.6 41 46-86 3-46 (383)
306 4e4t_A Phosphoribosylaminoimid 21.2 1.3E+02 0.0044 26.5 5.4 20 222-241 258-277 (419)
307 2id1_A Hypothetical protein; a 21.1 1.1E+02 0.0037 22.8 4.1 54 60-142 3-56 (130)
308 4etm_A LMPTP, low molecular we 21.1 60 0.0021 25.2 2.8 25 44-71 16-42 (173)
309 3lwz_A 3-dehydroquinate dehydr 21.0 79 0.0027 24.3 3.3 77 46-140 7-97 (153)
310 3bk2_A RNAse J, metal dependen 20.9 4.8E+02 0.017 23.8 10.1 70 113-188 303-372 (562)
311 4fu0_A D-alanine--D-alanine li 20.6 1.5E+02 0.0052 25.3 5.6 41 45-86 2-45 (357)
312 1f35_A Olfactory marker protei 20.5 63 0.0022 24.3 2.6 16 228-243 119-134 (162)
313 1v98_A Thioredoxin; oxidoreduc 20.5 1.4E+02 0.0046 21.2 4.6 57 26-84 31-88 (140)
314 3pam_A Transmembrane protein; 20.4 1.5E+02 0.005 23.8 5.2 35 48-85 130-164 (259)
315 3gra_A Transcriptional regulat 20.3 49 0.0017 26.1 2.2 40 113-160 69-109 (202)
316 2a33_A Hypothetical protein; s 20.3 77 0.0026 25.6 3.4 31 46-77 13-46 (215)
317 3ec2_A DNA replication protein 20.2 95 0.0033 23.3 3.8 75 47-129 38-114 (180)
318 3gt0_A Pyrroline-5-carboxylate 20.1 79 0.0027 25.4 3.5 79 46-142 2-84 (247)
319 2ckk_A KIN17; beta barrel, rib 20.0 23 0.00077 26.4 0.1 33 31-63 59-91 (127)
No 1
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=100.00 E-value=4.3e-32 Score=225.39 Aligned_cols=197 Identities=36% Similarity=0.591 Sum_probs=145.9
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
+.||||+|||+|++|||+++|++|++++++ .|++++++++.+. +..|..+..|. +++..+....+++.+||+|||||
T Consensus 3 M~M~kilii~~S~~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~aD~ii~gs 79 (200)
T 2a5l_A 3 MSSPYILVLYYSRHGATAEMARQIARGVEQ-GGFEARVRTVPAV-STECEAVAPDI-PAEGALYATLEDLKNCAGLALGS 79 (200)
T ss_dssp --CCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEBCCCE-EC--------------CCBCCHHHHHTCSEEEEEE
T ss_pred CCcceEEEEEeCCCChHHHHHHHHHHHHhh-CCCEEEEEEhhhc-cchhhhhcccc-ccccCchhhHHHHHHCCEEEEEc
Confidence 457899999999999999999999999998 7999999999886 33455444454 22222222367899999999999
Q ss_pred cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCC
Q 040588 124 PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSL 203 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~ 203 (252)
|+|++++|+++|+|||++...|....++||++++|+++|+..++.+.++.++...|..+|+.+++..+.. +.. .+.+
T Consensus 80 P~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~--~~~~ 156 (200)
T 2a5l_A 80 PTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIPYSE-PAL--LETR 156 (200)
T ss_dssp ECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCCCC------------
T ss_pred ChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCC-ccc--cccc
Confidence 9999999999999999998776656789999999999998766766788999999999999999865431 000 0112
Q ss_pred CCCCccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 040588 204 RGGSPYGAGVFSG-DGTRKPTETELALAEHQGKYMAAIVKKFSH 246 (252)
Q Consensus 204 ~~~~~~G~~~~~~-~~~~~pde~~l~~a~~~g~~la~~~~~l~~ 246 (252)
..+.+++.+.+.+ +++..|+++++++|+++|++|++.+++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~~ 200 (200)
T 2a5l_A 157 GGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS 200 (200)
T ss_dssp ---CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 2345566655543 445689999999999999999999988763
No 2
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.98 E-value=7.2e-31 Score=217.68 Aligned_cols=195 Identities=46% Similarity=0.814 Sum_probs=153.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhc--ccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQ--MKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~--~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
||||+|||+|++|||+++|++|++++++..|++++++++.+..+ .|..+ ..|.. .+ +....+++.+||+|||||
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~-~~~~~~~~~~~~-~~--~~~~~~~l~~aD~ii~gs 76 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMP-PQLFEKAGGKTQ-TA--PVATPQELADYDAIIFGT 76 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSC-HHHHHHTTCCCC-CS--CBCCGGGGGGCSEEEEEE
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCc-hhhhhhcccccc-cC--chhhHHHHHHCCEEEEEe
Confidence 68999999999999999999999999752488999999998744 33321 22331 11 111257899999999999
Q ss_pred cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCC
Q 040588 124 PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSL 203 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~ 203 (252)
|+|++++|++||+|||++..+|....++||++++|+++||. ++.+.++..+...+..+||.+++.++.. +.......+
T Consensus 77 P~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~~~~~~-~~~~~~~~~ 154 (198)
T 3b6i_A 77 PTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVPIGYAA-QELFDVSQV 154 (198)
T ss_dssp EEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECCCTTCS-GGGGCCSSC
T ss_pred ChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEECCCCCc-ccccccccc
Confidence 99999999999999999987765557899999999999986 5677788999999999999999876531 111111124
Q ss_pred CCCCccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 040588 204 RGGSPYGAGVFSG-DGTRKPTETELALAEHQGKYMAAIVKKFSH 246 (252)
Q Consensus 204 ~~~~~~G~~~~~~-~~~~~pde~~l~~a~~~g~~la~~~~~l~~ 246 (252)
+++.+||.+.+.+ +++..|+++++++|+++|++|++.++++++
T Consensus 155 ~g~~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~la~~~~~~~~ 198 (198)
T 3b6i_A 155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198 (198)
T ss_dssp CCCBTTBCEEECCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcceecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5667788877754 455689999999999999999999998763
No 3
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=2.3e-30 Score=215.12 Aligned_cols=194 Identities=37% Similarity=0.634 Sum_probs=149.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcc-cCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQM-KVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~-~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
||||+|||+| +|||+++|++|++++++ .|++++++++.+. .+.|..+. .|... |.......+++.+||+||||||
T Consensus 4 mmkilii~~S-~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~~~~-d~~~~~~~~~l~~aD~ii~gsP 79 (199)
T 2zki_A 4 KPNILVLFYG-YGSIVELAKEIGKGAEE-AGAEVKIRRVRET-LPPEFQSRIPFDKV-KDIPEVTLDDMRWADGFAIGSP 79 (199)
T ss_dssp CCEEEEEECC-SSHHHHHHHHHHHHHHH-HSCEEEEEECCCC-SCGGGGTTCCGGGS-TTSCBCCHHHHHHCSEEEEEEE
T ss_pred CcEEEEEEeC-ccHHHHHHHHHHHHHHh-CCCEEEEEehhHh-CChhhhhccCCCcc-cccccccHHHHHhCCEEEEECC
Confidence 6899999999 99999999999999988 7999999999987 33454332 34422 1111112578999999999999
Q ss_pred ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCC
Q 040588 125 TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLR 204 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 204 (252)
+||+++|++||+|||++..+|....++||++++|+++|+..++.+.++..+...+..+||.+++..+..+ ..+. ..+
T Consensus 80 ~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~~~~~~-~~~~--~~~ 156 (199)
T 2zki_A 80 TRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPIGYGIP-ELFQ--TTT 156 (199)
T ss_dssp CBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCCTTCST-HHHH--CSS
T ss_pred ccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCCCcCCc-cccc--ccc
Confidence 9999999999999999987776567899999999999987566666888999999999999998765311 0000 012
Q ss_pred CCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040588 205 GGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFSHPN 248 (252)
Q Consensus 205 ~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l~~~~ 248 (252)
.+.+||...+.+. ..|+++++++|+++|++|++.++++++.+
T Consensus 157 ~~~~~~~~~~~~~--~~~~~~~~~~a~~~g~~l~~~~~~l~~~~ 198 (199)
T 2zki_A 157 GGGPYGATHLGSK--EELDEMERKIARFQGKRITEVAKAIKCCN 198 (199)
T ss_dssp SCCSSCCCCBSSC--SSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCcceeeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555433211 17899999999999999999999998765
No 4
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.97 E-value=3.5e-30 Score=216.25 Aligned_cols=194 Identities=31% Similarity=0.403 Sum_probs=151.0
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcc-cCCCC----CCCC-cccchhhhhccCe
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQM-KVPQK----GIEV-PVIAVDDLVHADG 118 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~-~~~~~----~d~~-~~~~~~~l~~aD~ 118 (252)
.||||+|||+|++|||++||++|++++++ .|++++++++.+. ...|..+. .|+.. .+++ ..+ .+++.+||+
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~l~~aD~ 81 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRA-AGAEVRLLKVRET-APQDVIDGQDAWKANIEAMKDVPEAT-PADLEWAEA 81 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEECCCC-SCHHHHTTCHHHHHHHHHTTTSCBCC-HHHHHHCSE
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhc-CCCEEEEEecccc-ccchhhhcccccccccccccchhHHH-HHHHHHCCE
Confidence 47899999999999999999999999998 8999999999987 33343321 11110 0133 233 688999999
Q ss_pred EEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccc
Q 040588 119 LLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMF 198 (252)
Q Consensus 119 II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~ 198 (252)
||||||+||+++|++||+|||++..+|....++||++++|+++|+..++.+.++..+...+..+||.+++.++.. +.+
T Consensus 82 ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~-~~~- 159 (211)
T 1ydg_A 82 IVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTD-EVI- 159 (211)
T ss_dssp EEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCCTTCS-HHH-
T ss_pred EEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCCCCCC-hhh-
Confidence 999999999999999999999998777666789999999999998766666788999999999999999875430 000
Q ss_pred cccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040588 199 GMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFSHPN 248 (252)
Q Consensus 199 ~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l~~~~ 248 (252)
..+++..||...+.+ ...|+++++++|+++|++|++.+++++.++
T Consensus 160 ---~~~~~~~~g~~~~~~--~~~p~~~~~~~a~~~g~~l~~~~~~~~~~~ 204 (211)
T 1ydg_A 160 ---FKSGGNPYGASVTAN--GQPLLENDRASIRHQVRRQVELTAKLLEGG 204 (211)
T ss_dssp ---HHTTCCSSSCEEECC--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---ccCCCCCccceeecC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 012344566554421 146899999999999999999999987654
No 5
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.97 E-value=8.4e-30 Score=211.74 Aligned_cols=184 Identities=21% Similarity=0.283 Sum_probs=134.6
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.||||+|||+|++|||++||++|++++++ +.+++.+. +++++...+++.+||+||||+|
T Consensus 5 ~~~kiliiy~S~~GnT~~lA~~ia~~l~~------~~~~v~~~---------------~~~~~~~~~~l~~~D~ii~gsP 63 (193)
T 3d7n_A 5 SSSNTVVVYHSGYGHTHRMAEAVAEGAEA------TLHAIDAE---------------GNLSEDGWAALDAADAIIFGTP 63 (193)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTC------EEEECCTT---------------SCCCHHHHHHHHHCSEEEEEEE
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHhhh------cceEeeec---------------CCCCHhHHHHHHHCCEEEEEeC
Confidence 47899999999999999999999999975 34555542 1233212578999999999999
Q ss_pred ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCc--cccccC
Q 040588 125 TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTE--MFGMDS 202 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~--~~~~~~ 202 (252)
+|++++|+++|.|||++..+|....++||++++|+++|+.+++.+.++.++...|.++||.+++..+..+.. ......
T Consensus 64 ~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~vg~~~~~~~~~~~~~~~~ 143 (193)
T 3d7n_A 64 TYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVSLGIKPSNLKSSVRNDA 143 (193)
T ss_dssp EETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEECCCC--------------
T ss_pred ccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEeCCccCcccccccccccC
Confidence 999999999999999998777666789999999999988766677889999999999999999876542100 000011
Q ss_pred CCCCCccccceecC-CC-CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 040588 203 LRGGSPYGAGVFSG-DG-TRKPTETELALAEHQGKYMAAIVKKFSHPND 249 (252)
Q Consensus 203 ~~~~~~~G~~~~~~-~~-~~~pde~~l~~a~~~g~~la~~~~~l~~~~~ 249 (252)
.+.+.++|..++.+ ++ +..||+++++.|+++|++|++.+++|++.++
T Consensus 144 ~~~g~~~g~~~~~~~~~~~~~~d~~~l~~a~~~G~~la~~~~~l~~~~~ 192 (193)
T 3d7n_A 144 NRMGSYIAPMAQSDADAAPEEMSVGDLETARLYGARVANVARQHKSTER 192 (193)
T ss_dssp -----CCSCEEEC-------CCCHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCCCcceeeEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 12355577666653 32 2238999999999999999999999987653
No 6
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.95 E-value=4.7e-27 Score=194.17 Aligned_cols=167 Identities=31% Similarity=0.481 Sum_probs=133.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||||+|||+|++|||+++|++|++++++..|++++++++.+. ..+++.+||+||||+|+
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~---------------------~~~~l~~aD~ii~gsP~ 62 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA---------------------TKEDVLWADGLAVGSPT 62 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC---------------------CHHHHHHCSEEEEEEEC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC---------------------CHHHHHhCCEEEEEeCc
Confidence 789999999999999999999999997424789999999864 25678999999999999
Q ss_pred cCCCchHHHHHHHHhhhh-hhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCC
Q 040588 126 RFGSMASQMKAFFDSTFH-LWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLR 204 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~-~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 204 (252)
|++++|+.+|.|||++.. .| ..++||++++|+++|++.++...++..+...|..+||.+++.+...+..
T Consensus 63 y~g~~~~~lk~fld~~~~~~~--~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~-------- 132 (188)
T 2ark_A 63 NMGLVSWKMKRFFDDVLGDLW--GEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGVTDYVGKK-------- 132 (188)
T ss_dssp BTTBCCHHHHHHHHHTGGGTT--TSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEECCEEEEEETT--------
T ss_pred cCCcCCHHHHHHHHHHhhhhH--HHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCCcEEeCCCcccccc--------
Confidence 999999999999999864 22 3689999999999876566666778889999999999998753211000
Q ss_pred CCCccccceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhcCCC
Q 040588 205 GGSPYGAGVFSGDGTRKPT-ETELALAEHQGKYMAAIVKKFSHPN 248 (252)
Q Consensus 205 ~~~~~G~~~~~~~~~~~pd-e~~l~~a~~~g~~la~~~~~l~~~~ 248 (252)
....+|... ...|+ ++++++|+++|++|++.+++++++.
T Consensus 133 ~~~~~g~~~-----~~~p~~~~~~~~~~~~g~~la~~~~~~~~g~ 172 (188)
T 2ark_A 133 FTLHYGAVV-----AGEPRSEEEKEACRRLGRRLAEWVAIFVDGR 172 (188)
T ss_dssp EEESSSEEE-----ESSCCSHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ccCCCccee-----ecCCCcHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 001123221 24688 9999999999999999999998643
No 7
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.94 E-value=1.7e-26 Score=186.63 Aligned_cols=147 Identities=18% Similarity=0.269 Sum_probs=120.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|||+|+|+|++|||+++|+.|++++.+ .|++++++++.+..+ .++ ..++.+||+||||+|||
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~~~----------------~~~-~~~~~~~d~ii~Gspty 62 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVK-TGVAVEMVDLRAVDP----------------QEL-IEAVSSARGIVLGTPPS 62 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHH-TTCCEEEEETTTCCH----------------HHH-HHHHHHCSEEEEECCBS
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHh-CCCeEEEEECCCCCH----------------HHH-HHHHHhCCEEEEEcCCc
Confidence 799999999999999999999999988 899999999987521 222 45678999999999999
Q ss_pred CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCCCC
Q 040588 127 FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGG 206 (252)
Q Consensus 127 ~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~ 206 (252)
++.+|. +.|++++.. ..++||++++|+++||. +. ++..+.+.|...|+.+++.++.
T Consensus 63 ~g~~p~--~~fl~~l~~----~~l~gk~v~~fgs~g~~-g~---a~~~l~~~l~~~G~~~v~~~~~-------------- 118 (161)
T 3hly_A 63 QPSEAV--ATALSTIFA----AAHNKQAIGLFDSYGGD-DE---PIDALLAQFRNLGLHTAFPPIR-------------- 118 (161)
T ss_dssp SCCHHH--HHHHHHHHH----HCCTTSEEEEECCCCSS-BC---CHHHHHHHHHHTTCEESSSCBC--------------
T ss_pred CCchhH--HHHHHHHHh----hhhCCCEEEEEEcCCCC-cH---HHHHHHHHHHHCCCEEecCceE--------------
Confidence 987664 999998754 25899999999999884 32 4678888999999999865432
Q ss_pred CccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 040588 207 SPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFSH 246 (252)
Q Consensus 207 ~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l~~ 246 (252)
.+.+|+++++++|++||++|++.+++.+.
T Consensus 119 -----------~~~~P~~~dl~~~~~~g~~la~~l~~~~~ 147 (161)
T 3hly_A 119 -----------VKDQPTEAIYQQCEESGTDLGQWLTRADA 147 (161)
T ss_dssp -----------CCSSCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred -----------EeeCCCHHHHHHHHHHHHHHHHHHHhhhH
Confidence 13579999999999999999998876443
No 8
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.94 E-value=7.4e-26 Score=182.68 Aligned_cols=146 Identities=16% Similarity=0.225 Sum_probs=120.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC-CCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET-LPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~-~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.+||+|||+|++|||++||++|++++++ .|++++++++.+. .+ .++ ..++.+||+||||||
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~-~g~~v~~~~~~~~~~~----------------~~~-~~~~~~~d~ii~Gsp 65 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITK-TGVGVDVVDLGAAVDL----------------QEL-RELVGRCTGLVIGMS 65 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHH-TTCEEEEEESSSCCCH----------------HHH-HHHHHTEEEEEEECC
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHH-CCCeEEEEECcCcCCH----------------HHH-HHHHHhCCEEEEEcC
Confidence 3689999999999999999999999988 8999999999864 22 222 467888999999999
Q ss_pred ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCC
Q 040588 125 TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLR 204 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 204 (252)
||+|.+| ++.|++++.. ..++||++++|+++||..+ ++..|.+.|...|+.+++.++.
T Consensus 66 ty~g~~p--~~~~l~~l~~----~~~~~k~va~fgs~g~~~~----a~~~l~~~l~~~G~~~v~~~~~------------ 123 (159)
T 3fni_A 66 PAASAAS--IQGALSTILG----SVNEKQAVGIFETGGGDDE----PIDPLLSKFRNLGLTTAFPAIR------------ 123 (159)
T ss_dssp BTTSHHH--HHHHHHHHHH----HCCTTSEEEEECCSSSCBC----CHHHHHHHHHHTTCEESSSCBC------------
T ss_pred cCCCCcc--HHHHHHHHHh----hcccCCEEEEEEcCCCCcH----HHHHHHHHHHHCCCEEecCceE------------
Confidence 9999866 5999998754 2579999999999988532 3667888899999999875432
Q ss_pred CCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040588 205 GGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKF 244 (252)
Q Consensus 205 ~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l 244 (252)
.+.+|+++++++|++||++|++.+++-
T Consensus 124 -------------~~~~P~~~dl~~~~~~g~~la~~~~~~ 150 (159)
T 3fni_A 124 -------------IKQTPTENTYKLCEEAGTDLGQWVTRD 150 (159)
T ss_dssp -------------CSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------EEeCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 135799999999999999999887653
No 9
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.92 E-value=9.1e-25 Score=171.34 Aligned_cols=135 Identities=21% Similarity=0.324 Sum_probs=115.2
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCC
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFG 128 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g 128 (252)
|+|+|+|++|||+++|+.|++++++ .|++++++++.+. ...++.++|.||||+|||++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~iiig~pty~~ 58 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIE-SGKDVNTINVSDV---------------------NIDELLNEDILILGCSAMTD 58 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHH-TTCCCEEEEGGGC---------------------CHHHHTTCSEEEEEECCBTT
T ss_pred CEEEEECCCchHHHHHHHHHHHHHH-CCCeEEEEEhhhC---------------------CHHHHhhCCEEEEEcCccCC
Confidence 6899999999999999999999998 8999999999864 24678899999999999999
Q ss_pred CchH--HHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCCCC
Q 040588 129 SMAS--QMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGG 206 (252)
Q Consensus 129 ~~~~--~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~ 206 (252)
++++ .++.|++++.. .++||++++|+++||.. + .++..+.+.|..+|+.+++.++.
T Consensus 59 g~~p~~~~~~fl~~l~~-----~l~~k~~~~f~t~g~~~-~--~a~~~l~~~l~~~G~~~v~~~~~-------------- 116 (138)
T 5nul_A 59 EVLEESEFEPFIEEIST-----KISGKKVALFGSYGWGD-G--KWMRDFEERMNGYGCVVVETPLI-------------- 116 (138)
T ss_dssp TBCCTTTHHHHHHHHGG-----GCTTCEEEEEEEESSSC-S--HHHHHHHHHHHHTTCEECSCCEE--------------
T ss_pred CCCChHHHHHHHHHHHh-----hcCCCEEEEEEecCCCC-C--hHHHHHHHHHHHCCCEEECCceE--------------
Confidence 8654 79999999863 38999999999999853 2 46788999999999999875432
Q ss_pred CccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 040588 207 SPYGAGVFSGDGTRKPTETELALAEHQGKYMAA 239 (252)
Q Consensus 207 ~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~ 239 (252)
+ +.+|++++ ++|++||++|++
T Consensus 117 -------~----~~~p~~~d-~~~~~~~~~l~~ 137 (138)
T 5nul_A 117 -------V----QNEPDEAE-QDCIEFGKKIAN 137 (138)
T ss_dssp -------E----ESSCGGGH-HHHHHHHHHHHT
T ss_pred -------E----ecCCCHHH-HHHHHHHHHHhc
Confidence 1 24799999 999999999975
No 10
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=99.92 E-value=2.1e-24 Score=185.10 Aligned_cols=169 Identities=13% Similarity=0.018 Sum_probs=131.0
Q ss_pred CceEEEEEeCCc--hhHHHHHHHHHHhccccC-CceEEEEECCCCCCHHHH-------hcccCCCCC-CCCcccchhhhh
Q 040588 46 QLKIFIIFYSMY--GHVEILARRMKKGVDSID-GVEGVLYRVPETLPAEVL-------EQMKVPQKG-IEVPVIAVDDLV 114 (252)
Q Consensus 46 ~~kIlIIy~S~~--GnT~~la~~i~~~l~~~~-G~ev~l~~l~~~~p~~~~-------~~~~~~~~~-d~~~~~~~~~l~ 114 (252)
||||||||+|+. |||++|++++++++++ . |++++++++.+..+..|. ....|.... +++..+ .+++.
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~-~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~-~~~l~ 78 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISS-RNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVI-KKELL 78 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHH-HSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHH-hcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHH-HHHHH
Confidence 689999999984 9999999999999987 6 899999999987443232 223455431 556665 78899
Q ss_pred ccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCC
Q 040588 115 HADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFG 194 (252)
Q Consensus 115 ~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~ 194 (252)
+||+|||+||+||+++|+.||+|||++...+....++||++++|+|+|+.+ ...++..+...+...|+.+++....
T Consensus 79 ~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~g--~~~~~~~l~~~l~~~G~~~v~~~~~-- 154 (242)
T 1sqs_A 79 ESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESNG--SDNVSEYLRDIFSYMGGQILHQVSI-- 154 (242)
T ss_dssp HCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSCC--SCCHHHHHHHHHHHTTCEEEEEEEE--
T ss_pred HCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCCc--hhhHHHHHHHHHHHCCCeeeeEEEE--
Confidence 999999999999999999999999998643323368999999999988742 2246778888898999999864210
Q ss_pred CccccccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040588 195 TEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKF 244 (252)
Q Consensus 195 ~~~~~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l 244 (252)
+. .++++++++++++|++|++.+++.
T Consensus 155 -------------------~~-----~~~~~~~~~~~~~~~~la~~i~~~ 180 (242)
T 1sqs_A 155 -------------------TN-----SLKDIAEAQLMEATYKIEDVLEGK 180 (242)
T ss_dssp -------------------EG-----GGGGGHHHHHHHHHHHHHHHHTTC
T ss_pred -------------------ec-----cCChHHHHHHHHHHHHHHHHHhcC
Confidence 11 123468999999999999987653
No 11
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.91 E-value=1.9e-24 Score=171.42 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=117.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhh-ccCeEEEecc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLV-HADGLLFGFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~-~aD~II~gsP 124 (252)
||||+|+|+|++|||+++|+.|++++.+ .|++++++++.+. ...++. ++|.||||+|
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~~d~ii~g~p 58 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAA-GGHEVTLLNAADA---------------------SAENLADGYDAVLFGCS 58 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHT-TTCEEEEEETTTB---------------------CCTTTTTTCSEEEEEEC
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-CCCeEEEEehhhC---------------------CHhHhcccCCEEEEEec
Confidence 6899999999999999999999999998 8999999999874 134567 9999999999
Q ss_pred ccC---CCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCcccccc
Q 040588 125 TRF---GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMD 201 (252)
Q Consensus 125 ~y~---g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~ 201 (252)
||+ |.+|+.++.|++++.. ..+++|++++|+++....++...+...+.+.|...|+.+++....
T Consensus 59 ty~~~~G~~p~~~~~fl~~l~~----~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~--------- 125 (148)
T 3f6r_A 59 AWGMEDLEMQDDFLSLFEEFDR----IGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLK--------- 125 (148)
T ss_dssp EECSSSCEECHHHHHHHTTGGG----TCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEE---------
T ss_pred ccCCCCCCCcHHHHHHHHHhhc----cCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceE---------
Confidence 998 6999999999999764 268999999999843322333346788999999999999865322
Q ss_pred CCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 040588 202 SLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAI 240 (252)
Q Consensus 202 ~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~ 240 (252)
+ +..|++ +++++++|+++|++.
T Consensus 126 ------------~----~~~p~~-~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 126 ------------M----EGDASN-DPEAVASFAEDVLKQ 147 (148)
T ss_dssp ------------E----ESSGGG-CHHHHHHHHHHHHHT
T ss_pred ------------e----ecCcch-HHHHHHHHHHHHHhh
Confidence 1 245888 999999999998763
No 12
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.91 E-value=2.9e-24 Score=178.75 Aligned_cols=174 Identities=17% Similarity=0.096 Sum_probs=129.6
Q ss_pred CceEEEEEeCC--chhHHHHHHHHHHh-ccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 46 QLKIFIIFYSM--YGHVEILARRMKKG-VDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 46 ~~kIlIIy~S~--~GnT~~la~~i~~~-l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
||||+|||+|+ +|||+++|+.++++ +++ .|++++++++.+.....|..+ |. ..+++..+ .+++.+||+|||+
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~-~g~~v~~~dl~~~~~~~~~~~--~~-~~~~~~~~-~~~i~~aD~ii~~ 76 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLAR-SDSQGRHIHVIDLDPKALLRG--DL-SNAKLKEA-VDATCNADGLIVA 76 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHH-SSEEEEEEEGGGSCHHHHHHT--CT-TSHHHHHH-HHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHH-CCCeEEEEEccccCchhhccc--cc-CcHHHHHH-HHHHHHCCEEEEE
Confidence 68999999997 79999999999999 987 799999999987644444432 22 22334444 5789999999999
Q ss_pred ccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHH-HHHHHHHHcCcEEecCCccCCCcccccc
Q 040588 123 FPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAW-TAITQLAHHGMVYVPIGYTFGTEMFGMD 201 (252)
Q Consensus 123 sP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~-~l~~~l~~~G~~vv~~~~~~~~~~~~~~ 201 (252)
||+|++++|+.+|+|||++.. ..++||++++|+++|+. ++. .++. .+...|...|+.+++.+....
T Consensus 77 sP~y~~~~p~~lK~~ld~l~~----~~~~gK~~~~~~tgg~~-~~~-~a~~~~l~~~l~~~g~~~v~~~v~~~------- 143 (197)
T 2vzf_A 77 TPIYKASYTGLLKAFLDILPQ----FALAGKAALPLATGGSP-AHV-LALDYGLRPVLHSMGVRHVVQSFFLV------- 143 (197)
T ss_dssp EECBTTBCCHHHHHHHTTSCT----TTTTTCEEEEEEEESSG-GGG-GHHHHTHHHHHHTTTCSEECCCEEEE-------
T ss_pred eCccCCCCCHHHHHHHHhccc----cccCCCEEEEEEECCCc-chh-hHHHHHHHHHHHHcCCEeccceEEEe-------
Confidence 999999999999999999853 36899999999997764 222 2453 688888889999987533210
Q ss_pred CCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 040588 202 SLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFS 245 (252)
Q Consensus 202 ~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l~ 245 (252)
...+ .+..++. .++++++++++++++++++.+++.+
T Consensus 144 ----~~~~---~~~~~g~-~~d~~~~~~l~~~~~~l~~~i~~~~ 179 (197)
T 2vzf_A 144 ----QSQF---SVVDGKL-AVEDDVASQLNNAIDHFRLSLSSEP 179 (197)
T ss_dssp ----SCCC--------CC-CSCHHHHHHHHHHHHHHHHTCCCCG
T ss_pred ----chhh---cccCCCC-cCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 0000 0111222 6899999999999999998765544
No 13
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=99.90 E-value=1.1e-22 Score=175.29 Aligned_cols=185 Identities=14% Similarity=0.111 Sum_probs=137.2
Q ss_pred CCCCCCCceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccC
Q 040588 40 TTSTTGQLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHAD 117 (252)
Q Consensus 40 ~~~~~~~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD 117 (252)
-..++.||||+||++|+ .|+|++|++++++++++ .|+++++++|.+.... .. +....+++..+ .++|.+||
T Consensus 28 ~~~~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~-~g~eve~idL~~~pl~-~~----d~~~~d~~~~l-~~~i~~AD 100 (247)
T 2q62_A 28 PAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEF-FGAEVKVFDPSGLPLP-DA----APVSHPKVQEL-RELSIWSE 100 (247)
T ss_dssp CCCCCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHH-TTCEEEECCCTTCCCT-TS----SCTTSHHHHHH-HHHHHHCS
T ss_pred hhccCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhh-CCCEEEEEEhhcCCCC-cC----CCCCCHHHHHH-HHHHHHCC
Confidence 34456689999999997 59999999999999988 8999999999885211 10 00011234444 68899999
Q ss_pred eEEEeccccCCCchHHHHHHHHhhhhhhh-hccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCc
Q 040588 118 GLLFGFPTRFGSMASQMKAFFDSTFHLWE-QQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTE 196 (252)
Q Consensus 118 ~II~gsP~y~g~~~~~~k~fld~l~~~~~-~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~ 196 (252)
+|||+||+||+++|+.||+|||++...|. ...++||++++++++|+. |+. .++..+...+...||.+++..+.+.
T Consensus 101 ~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg~-~a~~~Lr~~l~~lg~~~v~~~v~i~-- 176 (247)
T 2q62_A 101 GQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QSF-NAVNQMRILGRWMRMITIPNQSSVA-- 176 (247)
T ss_dssp EEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECSCCEEES--
T ss_pred EEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cHH-HHHHHHHHHHHHCCCEEeCCEEEEe--
Confidence 99999999999999999999999976543 135899999999998875 333 4677888899999999886533210
Q ss_pred cccccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040588 197 MFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFSHPN 248 (252)
Q Consensus 197 ~~~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l~~~~ 248 (252)
..+. .+..++. ..+++.+++++.++++|++++++++..+
T Consensus 177 ----------~~~~--~fd~~g~-l~d~~~~~~l~~~~~~l~~~~~~l~~~r 215 (247)
T 2q62_A 177 ----------KAFQ--EFDANGR-MKPSSYYDRVVDVMEELVKFTLLTRDCS 215 (247)
T ss_dssp ----------SGGG--GBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred ----------cchh--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0011 1211222 2467788999999999999999987643
No 14
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=99.90 E-value=8.2e-23 Score=178.52 Aligned_cols=181 Identities=12% Similarity=0.102 Sum_probs=134.7
Q ss_pred CCCceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE
Q 040588 44 TGQLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 44 ~~~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
..||||++||+|+ .|+|++|++++++++++ .|++++++++.+.....+. .. ...+++.++ .++|.+||+|||
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~-~G~eveiidL~dlpl~~~d---~~-~~~d~v~~l-~e~I~~ADgiV~ 129 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQF-FGAETRIFDPSDLPLPDQV---QS-DDHPAVKEL-RALSEWSEGQVW 129 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHH-TTCEEEEBCCTTCCCTTTS---GG-GCCHHHHHH-HHHHHHCSEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhh-CCCEEEEEehhcCCCCccC---cc-CCCHHHHHH-HHHHHHCCeEEE
Confidence 4578999999997 59999999999999988 8999999999886221110 00 112234444 688999999999
Q ss_pred eccccCCCchHHHHHHHHhhhhhhh-hccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccc
Q 040588 122 GFPTRFGSMASQMKAFFDSTFHLWE-QQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGM 200 (252)
Q Consensus 122 gsP~y~g~~~~~~k~fld~l~~~~~-~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~ 200 (252)
+||+||+++|+.||+|||++...|. ...++||++++++++|+. |+. .++..+...+...||.+++..+.+.
T Consensus 130 aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv~~~v~v~------ 201 (279)
T 2fzv_A 130 CSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTIPNQSSIA------ 201 (279)
T ss_dssp EEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECSCCEEET------
T ss_pred EcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEeCCEEEEe------
Confidence 9999999999999999999976543 235899999999998875 333 4677888899999999986543210
Q ss_pred cCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 040588 201 DSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFSHP 247 (252)
Q Consensus 201 ~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l~~~ 247 (252)
..+. .+..++. ..+++.+++++.+++++++++++++..
T Consensus 202 ------~~~~--~fd~~G~-l~d~~~~~~l~~~~~~l~~~~~~l~~~ 239 (279)
T 2fzv_A 202 ------KAFQ--EFDAAGR-MKPSPYYDRIADVMEELVRFTALVRPH 239 (279)
T ss_dssp ------TGGG--TBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred ------cccc--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 1221222 246678899999999999999887753
No 15
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.89 E-value=5.9e-23 Score=160.09 Aligned_cols=133 Identities=22% Similarity=0.309 Sum_probs=111.6
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCC
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFG 128 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g 128 (252)
|+|+|+|++|||+++|+.|++++++ .|++++++++.+. ..+++.+||.||||+|+|++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~vi~g~p~y~~ 59 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKA-AGADVESVRFEDT---------------------NVDDVASKDVILLGCPAMGS 59 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHH-TTCCEEEEETTSC---------------------CHHHHHTCSEEEEECCCBTT
T ss_pred EEEEEECCCChHHHHHHHHHHHHHh-CCCeEEEEEcccC---------------------CHHHHhcCCEEEEEccccCC
Confidence 7999999999999999999999988 7899999998864 24678899999999999999
Q ss_pred CchHH--HHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCCCC
Q 040588 129 SMASQ--MKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGG 206 (252)
Q Consensus 129 ~~~~~--~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~ 206 (252)
+++++ ++.|+|++.. .++||++++|+|+|+..+ .+...+...|...|+.+++ .+.
T Consensus 60 ~~~~~~~~~~fl~~l~~-----~l~~k~~~~~~t~g~~~~---~~~~~l~~~l~~~g~~~~~-~~~-------------- 116 (137)
T 2fz5_A 60 EELEDSVVEPFFTDLAP-----KLKGKKVGLFGSYGWGSG---EWMDAWKQRTEDTGATVIG-TAI-------------- 116 (137)
T ss_dssp TBCCHHHHHHHHHHHGG-----GCSSCEEEEEEEESSCCS---HHHHHHHHHHHHTTCEEEE-EEE--------------
T ss_pred CCCCHHHHHHHHHHhhh-----hcCCCEEEEEEecCCCCc---hHHHHHHHHHHHCCCEEcC-cEE--------------
Confidence 99998 9999999853 689999999999987422 4678888999999999884 221
Q ss_pred CccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 040588 207 SPYGAGVFSGDGTRKPTETELALAEHQGKYMAA 239 (252)
Q Consensus 207 ~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~ 239 (252)
. ...|++ +++++++|+++++
T Consensus 117 -------~----~g~~~~--~~~~~~~~~~l~~ 136 (137)
T 2fz5_A 117 -------V----NEMPDN--APECKELGEAAAK 136 (137)
T ss_dssp -------E----ESSSSS--CTHHHHHHHHHHT
T ss_pred -------E----eeCCCh--HHHHHHHHHHHhc
Confidence 1 124655 8999999999874
No 16
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.89 E-value=5.9e-23 Score=188.24 Aligned_cols=156 Identities=22% Similarity=0.224 Sum_probs=128.5
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.||||+|+|+|++|||+++|++|++++.+ .|++++++++.+.. ...+ .+++.+||+||||+|
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~-~g~~v~~~~l~~~~----------------~~~~-~~~l~~~D~iiigsP 316 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARS-TGCETVLLEMTSSD----------------ITKV-ALHTYDSGAVAFASP 316 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEEGGGCC----------------HHHH-HHHHHTCSEEEEECC
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHh-CCCeEEEEEcCcCC----------------HHHH-HHHHHhCCEEEEEcC
Confidence 47899999999999999999999999988 78999999997642 1122 468899999999999
Q ss_pred ccCCCchHHHHHHHHhhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHH-cCcEEecCC-ccCCCcccccc
Q 040588 125 TRFGSMASQMKAFFDSTFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAH-HGMVYVPIG-YTFGTEMFGMD 201 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~-~G~~vv~~~-~~~~~~~~~~~ 201 (252)
+|++++|+.+|+|+|++... .+ +||++++|+++|+. ++ +...+...|.. +|+.+++.+ +.
T Consensus 317 ~y~~~~~~~~k~fld~l~~~----~~~~~K~~~~~~t~g~~-~~---a~~~l~~~l~~~~g~~~~~~~~~~--------- 379 (414)
T 2q9u_A 317 TLNNTMMPSVAAALNYVRGL----TLIKGKPAFAFGAFGWS-NR---AVPDIVAELRDGCKADVYDEKGIT--------- 379 (414)
T ss_dssp CBTTBCCHHHHHHHHHHHHH----TTTTTSBEEEEEEESSS-CC---HHHHHHHHHHHTSCCBCCCSSCEE---------
T ss_pred ccCcCchHHHHHHHHHHHhh----cccCCCEEEEEEecCCC-ch---hHHHHHHHHHhhcCcEEccCccEE---------
Confidence 99999999999999998643 45 89999999999885 33 35678888888 899887643 21
Q ss_pred CCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 040588 202 SLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFSHPNDSR 251 (252)
Q Consensus 202 ~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l~~~~~~~ 251 (252)
. ...|+++++++|+++|+++++.+++++..++++
T Consensus 380 ------------~----~~~p~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 413 (414)
T 2q9u_A 380 ------------F----KFNYTEELLEQAYNAGVDLGKRAIAYCEKNAPK 413 (414)
T ss_dssp ------------E----ESCCCHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred ------------E----eeCCCHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 1 146899999999999999999998887666553
No 17
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.89 E-value=4.1e-23 Score=163.43 Aligned_cols=141 Identities=17% Similarity=0.116 Sum_probs=114.7
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhc-cCeEEEeccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVH-ADGLLFGFPT 125 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~-aD~II~gsP~ 125 (252)
|||+|+|+|++|||+++|+.|++++.+ .|++++++++.+. ...++.+ +|.|||++|+
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~~d~ii~~~p~ 58 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELAD-AGYEVDSRDAASV---------------------EAGGLFEGFDLVLLGCST 58 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHH-HTCEEEEEEGGGC---------------------CSTTTTTTCSEEEEEECE
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHh-cCCeeEEEehhhC---------------------CHHHhcCcCCEEEEEeCC
Confidence 699999999999999999999999987 7899999998764 1345778 9999999999
Q ss_pred c-CCC--chHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccC
Q 040588 126 R-FGS--MASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDS 202 (252)
Q Consensus 126 y-~g~--~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~ 202 (252)
| +|. +|+.++.|++++.. ..+++|++++|+++++..++...+...+...|..+|+.+++.+..
T Consensus 59 y~~g~~~~p~~~~~fl~~l~~----~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~---------- 124 (147)
T 1f4p_A 59 WGDDSIELQDDFIPLFDSLEE----TGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLR---------- 124 (147)
T ss_dssp ECSSSCEECTTTHHHHHTGGG----SCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEE----------
T ss_pred CCCCCcCCChhHHHHHHHHHh----cccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccc----------
Confidence 9 567 79999999999864 268899999999965533444567889999999999998864321
Q ss_pred CCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 040588 203 LRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAA 239 (252)
Q Consensus 203 ~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~ 239 (252)
+ +..|++ +++++++++++|++
T Consensus 125 -----------~----~~~p~~-~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 125 -----------I----DGDPRA-ARDDIVGWAHDVRG 145 (147)
T ss_dssp -----------E----ESCGGG-GHHHHHHHHHHHHT
T ss_pred -----------c----ccCchh-HHHHHHHHHHHHHh
Confidence 1 124665 88899999999875
No 18
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=99.89 E-value=8.5e-23 Score=169.03 Aligned_cols=175 Identities=19% Similarity=0.127 Sum_probs=124.3
Q ss_pred CceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCH--HHHhcccCCCCCCCCcccchhhhhccCeEEE
Q 040588 46 QLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPA--EVLEQMKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 46 ~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~--~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
+|||+|||+|+ +|||+++|++++++++ .|++++++++.+. |. .|.. |....+++..+ .+++.+||+|||
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~--~g~~v~~~dl~~~-p~~~~~~~---~~~~~~~~~~~-~~~l~~aD~ii~ 78 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIGLVP--PGMSIELADISGI-PLYNEDVY---ALGFPPAVERF-REQIRAADALLF 78 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHTTCC--TTCEEEECCCTTC-CCCCHHHH---TTCCCHHHHHH-HHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHhcc--CCCeEEEEeHHHC-CCCCcccc---ccCCCHHHHHH-HHHHHhCCEEEE
Confidence 47999999997 4999999999999997 4889999999873 32 2222 22222344444 678999999999
Q ss_pred eccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecC-CccCCCccccc
Q 040588 122 GFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPI-GYTFGTEMFGM 200 (252)
Q Consensus 122 gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~-~~~~~~~~~~~ 200 (252)
+||+||+++|+.+|+|||++...+. ..++||++++|+++|+..++ ..++..+...+...|+.+++. .+...
T Consensus 79 ~sP~y~~~~p~~lK~~iD~~~~~~~-~~l~gK~~~~~~t~gg~~g~-~~~~~~l~~~l~~~g~~~~~~~~~~~~------ 150 (193)
T 1rtt_A 79 ATPEYNYSMAGVLKNAIDWASRPPE-QPFSGKPAAILGASAGRFGT-ARAQYHLRQTLVFLDVHPLNKPEVMIS------ 150 (193)
T ss_dssp ECCEETTEECHHHHHHHHHHTCSSS-CTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHHTCEECCSSCEEEC------
T ss_pred EccccccCcCHHHHHHHHHhccccC-cccCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHcCCEEcCCCeEEec------
Confidence 9999999999999999999864322 35899999999998654444 346788888898999999874 22210
Q ss_pred cCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040588 201 DSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKF 244 (252)
Q Consensus 201 ~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l 244 (252)
... ..+..++. ..+++..++++++++++++.+.+.
T Consensus 151 ------~~~--~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~ 185 (193)
T 1rtt_A 151 ------SAQ--NAFDAQGR-LLDDKARELIQQQLQALQLWVREG 185 (193)
T ss_dssp ------SGG--GTBCSTTC-BCCHHHHHHHHHHHHHHHC-----
T ss_pred ------chH--hhcCcCCC-cCCHHHHHHHHHHHHHHHHHHHHh
Confidence 000 01211222 346788899999999998776653
No 19
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=99.89 E-value=1e-23 Score=172.60 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=110.3
Q ss_pred CceEEEEEeCCc--hhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhccc-----CCCCCCCCcccchhhhhccCe
Q 040588 46 QLKIFIIFYSMY--GHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMK-----VPQKGIEVPVIAVDDLVHADG 118 (252)
Q Consensus 46 ~~kIlIIy~S~~--GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~-----~~~~~d~~~~~~~~~l~~aD~ 118 (252)
||||||||+|++ |||++||+++++++ +++.+++.+.....|..+.. |.. .+++..+ .+++.+||+
T Consensus 3 mMkilii~~S~r~~g~t~~la~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~l~~aD~ 74 (184)
T 1rli_A 3 AMKIAVINGGTRSGGNTDVLAEKAVQGF------DAEHIYLQKYPIQPIEDLRHAQGGFRPV-QDDYDSI-IERILQCHI 74 (184)
T ss_dssp --CEEEEESSCSSCCHHHHHHHHHHTTT------CCEEEEC------------------------CHHHH-HHHHHTCSE
T ss_pred CcEEEEEECCCCCCccHHHHHHHHHcCC------eEEEEEcCCCCCccCCccccccCCCCCC-CCCHHHH-HHHHHhCCE
Confidence 579999999974 99999999999876 35778887764444544332 222 2445544 678999999
Q ss_pred EEEeccccCCCchHHHHHHHHhhhhhhh-------hccCCCCcEEEEEeeCCCCC-ChHHHHHHHHHHHHHcCcEEecCC
Q 040588 119 LLFGFPTRFGSMASQMKAFFDSTFHLWE-------QQRLAGVPAGFFVSTGTQGG-GQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 119 II~gsP~y~g~~~~~~k~fld~l~~~~~-------~~~l~gK~~~if~s~G~~~g-~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
|||++|+||+++|+.||+|||++...+. ...++||++++|+++|+... +...++..+...+...|+.+++.-
T Consensus 75 ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~~~ 154 (184)
T 1rli_A 75 LIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGYV 154 (184)
T ss_dssp EEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccceEE
Confidence 9999999999999999999999764322 12578999999999877311 123357788888889999988631
Q ss_pred ccCCCccccccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 040588 191 YTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAA 239 (252)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~ 239 (252)
+. .| .. .+...++++.+++|+++|+++|.
T Consensus 155 ~~----------------~g---~~-~~~~~~~~~~l~~a~~lg~~~~~ 183 (184)
T 1rli_A 155 LG----------------EG---NR-PGDILRDHQALSAASRLLKRSDA 183 (184)
T ss_dssp EE----------------EC---SS-TTGGGGCHHHHHHHHHTTCCCCC
T ss_pred EE----------------cc---CC-cchhhcCHHHHHHHHHhhhhccc
Confidence 11 00 00 11223589999999999988763
No 20
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=99.88 E-value=7.1e-23 Score=166.90 Aligned_cols=167 Identities=13% Similarity=0.106 Sum_probs=120.4
Q ss_pred ceEEEEEeCCc--hhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 47 LKIFIIFYSMY--GHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 47 ~kIlIIy~S~~--GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
|||+|||+|++ |||+++|+.+++.+.+ +++++.+...+.|..+..|.. .+++..+ .+++.+||+|||+||
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~------~~i~l~~~~lp~~~~~~~~~~-~~~~~~~-~~~i~~aD~ii~~tP 72 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT------DLIDLSEFVLPVFNGEAEQSE-LLKVQEL-KQRVTKADAIVLLSP 72 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC------EEEETTTSCCCCCCCCHHHHT-CHHHHHH-HHHHHHCSSEEEEEE
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc------eEEeeecCCCCCCCChhhccC-cHHHHHH-HHHHHHCCEEEEEcC
Confidence 69999999986 9999999999999864 567776652211111111211 2334444 678999999999999
Q ss_pred ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCC
Q 040588 125 TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLR 204 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~ 204 (252)
+||+++|+.||+|||++.. ..++||++++|+++|+..|+ ..++..+...|...|+.+++.+....
T Consensus 73 ~y~~~~p~~lk~~lD~l~~----~~~~gK~~~~~~~sgg~~g~-~~a~~~l~~~l~~~g~~~v~~~v~i~---------- 137 (174)
T 3gfs_A 73 EYHSGMSGALKNALDFLSS----EQFKYKPVALLAVAGGGDGG-INALNNMRTVMRGVYANVIPKQLVLK---------- 137 (174)
T ss_dssp CSSSSCCHHHHHHHHTCCH----HHHTTCEEEEEEECCSTTCS-HHHHHHHHHHHHHTTCEEEEEEEEEC----------
T ss_pred CcCCCCCHHHHHHHHHhCH----hhhCCCcEEEEEECCCChhH-HHHHHHHHHHHHHcCCEEecceEEec----------
Confidence 9999999999999999864 36799999999876554343 34678899999999999987543210
Q ss_pred CCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040588 205 GGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKK 243 (252)
Q Consensus 205 ~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~ 243 (252)
...+.. ....++++..+.++++.+++++++++
T Consensus 138 ------~~~f~~-~~~~~~~~~~~~l~~~~~~l~~~~~~ 169 (174)
T 3gfs_A 138 ------PVHIDV-ENATVAENIKESIKELVEELSMFAKA 169 (174)
T ss_dssp ------GGGEET-TTTEECHHHHHHHHHHHHHHHHHHHC
T ss_pred ------hhhcCC-CCCccCHHHHHHHHHHHHHHHHHHHc
Confidence 111221 12457889999999999999988764
No 21
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=99.88 E-value=1.2e-22 Score=168.51 Aligned_cols=177 Identities=15% Similarity=0.101 Sum_probs=127.1
Q ss_pred CCceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhc-ccCCCCCCCCcccchhhhhccCeEEE
Q 040588 45 GQLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQ-MKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 45 ~~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~-~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
+||||+||++|+ .|+|++++++++++++ .|++++++++.+. |. +.+ ..|. ..+++..+ .+++.+||+|||
T Consensus 1 MM~kilii~gS~r~~s~t~~la~~~~~~~~--~~~~v~~~dl~~l-p~--~~~~~~~~-~~~~~~~~-~~~i~~AD~iV~ 73 (192)
T 3fvw_A 1 MSKRILFIVGSFSEGSFNRQLAKKAETIIG--DRAQVSYLSYDRV-PF--FNQDLETS-VHPEVAHA-REEVQEADAIWI 73 (192)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHHHHT--TSSEEEECCCSSC-CC--CCGGGTTS-CCHHHHHH-HHHHHHCSEEEE
T ss_pred CCCEEEEEEcCCCCCCHHHHHHHHHHHhcC--CCCEEEEEeCccC-CC--CCcccccC-CcHHHHHH-HHHHHhCCEEEE
Confidence 378999999997 6899999999999997 4889999999874 32 111 1232 22334444 789999999999
Q ss_pred eccccCCCchHHHHHHHHhhhhhh------hhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCC
Q 040588 122 GFPTRFGSMASQMKAFFDSTFHLW------EQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGT 195 (252)
Q Consensus 122 gsP~y~g~~~~~~k~fld~l~~~~------~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~ 195 (252)
+||+||+++|+.+|+|||++...+ ....|+||++++++++|+. | ...++..+...+...|+.+++.....
T Consensus 74 ~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~-g-~~~~~~~l~~~l~~~G~~~v~~~v~~-- 149 (192)
T 3fvw_A 74 FSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA-S-PEEVFEDYRSLLPFIRMHLVDQLTGV-- 149 (192)
T ss_dssp ECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCCCEEE--
T ss_pred ECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc-c-hhHHHHHHHHHHHHcCCeeecceeec--
Confidence 999999999999999999987532 1236899999999998773 2 23356778888889999998753221
Q ss_pred ccccccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 040588 196 EMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFS 245 (252)
Q Consensus 196 ~~~~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l~ 245 (252)
.+....+. ++...++++..++++.+.+++.+.+..|.
T Consensus 150 ------------~~~~~~f~-~g~~~~~~~~~~~l~~~~~~l~~~~~~~~ 186 (192)
T 3fvw_A 150 ------------PINSEAWS-TGILKVSAEKLAELSAQADALLSAIENLE 186 (192)
T ss_dssp ------------CCCTTHHH-HCCCCCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred ------------ccchhhcc-CCccccCHHHHHHHHHHHHHHHHHHHhhh
Confidence 00011121 24445689999999999999988876654
No 22
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.86 E-value=1.7e-21 Score=177.63 Aligned_cols=150 Identities=23% Similarity=0.248 Sum_probs=124.5
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
+..+|++|+|+|++|||+++|++|++++.+ .|++++++++.+.. .+.+ ..++.+||+|||||
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~-~g~~v~~~~~~~~~----------------~~~~-~~~l~~~d~iiigs 315 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMS-EGVDVRVYCLHEDD----------------RSEI-VKDILESGAIALGA 315 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHT-TTCEEEEEETTTSC----------------HHHH-HHHHHTCSEEEEEC
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHh-CCCeEEEEECCCCC----------------HHHH-HHHHHHCCEEEEEC
Confidence 456899999999999999999999999998 79999999998752 1122 56799999999999
Q ss_pred cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCC
Q 040588 124 PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSL 203 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~ 203 (252)
|+|++++|+.||+|||++...|... |+||++++|+++|+. ++ +...+...|...|+.+++. +.
T Consensus 316 P~y~~~~~~~~k~~ld~l~~~~~~~-l~~k~~~~~~~~g~~-~~---a~~~l~~~l~~~g~~~~~~-~~----------- 378 (404)
T 2ohh_A 316 PTIYDEPYPSVGDLLMYLRGLKFNR-TLTRKALVFGSMGGN-GG---ATGTMKELLAEAGFDVACE-EE----------- 378 (404)
T ss_dssp CEETTEECTHHHHHHHHHHHHCGGG-TCCEEEEEEEEESSS-CC---HHHHHHHHHHHTTEEEEEE-EE-----------
T ss_pred ccccccchHHHHHHHHHhhhccccc-cCCCEEEEEEecCCC-Ch---hHHHHHHHHHHCCCEEEeE-EE-----------
Confidence 9999999999999999987655444 799999999999885 33 3567888888999999864 21
Q ss_pred CCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040588 204 RGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVK 242 (252)
Q Consensus 204 ~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~ 242 (252)
. ...|+++++++++++++++++.++
T Consensus 379 ----------~----~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
T 2ohh_A 379 ----------V----YYVPTGDELDACFEAGRKLAAEIR 403 (404)
T ss_dssp ----------E----ESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ----------E----eeCCCHHHHHHHHHHHHHHHHHHh
Confidence 1 135889999999999999998763
No 23
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=99.86 E-value=2.3e-21 Score=161.82 Aligned_cols=181 Identities=16% Similarity=0.126 Sum_probs=130.3
Q ss_pred CCCceEEEEEeCC--chhHHHHHHHHHHhccccCCceEE-EEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEE
Q 040588 44 TGQLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGV-LYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLL 120 (252)
Q Consensus 44 ~~~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~-l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II 120 (252)
+..|||++|++|+ .++|+++++++++.+. .|++++ +++|.+. |........|.. .+++..+ .+++.+||+||
T Consensus 4 M~~mkIl~I~GS~r~~s~t~~la~~~~~~~~--~g~~v~~~idL~~l-P~~~~~~~~~~~-~~~~~~~-~~~i~~AD~iV 78 (199)
T 4hs4_A 4 TSPLHFVTLLGSLRKASFNAAVARALPEIAP--EGIAITPLGSIGTF-PHYSQDVQEEGF-PAPVLTM-AQQIATADAVV 78 (199)
T ss_dssp -CCEEEEEEECCCSTTCHHHHHHHHHHHHCC--TTEEEEECCCGGGS-CCCCHHHHHHCC-CHHHHHH-HHHHHHSSEEE
T ss_pred CCCCEEEEEEcCCCCCChHHHHHHHHHHHcc--CCCEEEEEEehhhc-CCCCccccccCC-CHHHHHH-HHHHHhCCEEE
Confidence 3457999999995 6899999999999996 488999 8898763 421111011211 2334444 78899999999
Q ss_pred EeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC-ccCCCcccc
Q 040588 121 FGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG-YTFGTEMFG 199 (252)
Q Consensus 121 ~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~-~~~~~~~~~ 199 (252)
|+||+||+++|+.+|+|||++.. +....|+||++++++++|+..|+. .+...++..|...|+.+++.+ +...
T Consensus 79 i~tP~Y~~s~p~~LK~~iD~~~~-~~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~~~~v~i~----- 151 (199)
T 4hs4_A 79 IVTPEYNYSVPGVLKNAIDWLSR-VSPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLNRPEAMIG----- 151 (199)
T ss_dssp EEECCBTTBCCHHHHHHHHHHTT-SSSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECCSSCEEEC-----
T ss_pred EEcCccCCCcCHHHHHHHHHhcc-cCCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcCCCeEEee-----
Confidence 99999999999999999999864 222468999999999976655554 467788889999999998742 2110
Q ss_pred ccCCCCCCccccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 040588 200 MDSLRGGSPYGAGVFSGD-GTRKPTETELALAEHQGKYMAAIVKKFSH 246 (252)
Q Consensus 200 ~~~~~~~~~~G~~~~~~~-~~~~pde~~l~~a~~~g~~la~~~~~l~~ 246 (252)
.. ...|..+ |. ..|++..++++.+.+++++++++++.
T Consensus 152 -------~~--~~~fd~~~g~-l~d~~~~~~l~~~~~~l~~~~~~~~~ 189 (199)
T 4hs4_A 152 -------QV--TGKVDAQTLE-LSDVATREFLARQLDALAALARTLSP 189 (199)
T ss_dssp -------SG--GGTBCSSSCC-BCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -------ch--hhhcCCcCCC-cCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 0113221 33 34788899999999999999988764
No 24
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=99.86 E-value=1.6e-21 Score=161.80 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=123.8
Q ss_pred CCceEEEEEeCC--chhHHHHHHHHHH----hccccC--CceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhcc
Q 040588 45 GQLKIFIIFYSM--YGHVEILARRMKK----GVDSID--GVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHA 116 (252)
Q Consensus 45 ~~~kIlIIy~S~--~GnT~~la~~i~~----~l~~~~--G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~a 116 (252)
-|.||++|.+|+ .|+|+++++++++ .+++ . |+++++++|.+..++.|..+.. ....+++..+ .+++.+|
T Consensus 10 ~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~-~~~g~eve~idL~d~~l~~~~~~~~-~~~~~~~~~~-~~~i~~A 86 (191)
T 3k1y_A 10 HMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSA-RGEALSVSTIELSELIPDLMTAMTT-RVHTTKLEEI-TSALSAS 86 (191)
T ss_dssp CSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEEEGGGCHHHHTTTTSS-SCCCHHHHHH-HHHHHHC
T ss_pred hhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHh-cCCCceEEEEEHHhCCCcccChhhc-CCCCHHHHHH-HHHHHHC
Confidence 367999999996 6899999999999 5554 4 7899999999864333332221 2223445555 7899999
Q ss_pred CeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHH-HHHHHHHcCcEEecCCccCCC
Q 040588 117 DGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWT-AITQLAHHGMVYVPIGYTFGT 195 (252)
Q Consensus 117 D~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~-l~~~l~~~G~~vv~~~~~~~~ 195 (252)
|+|||+||+||+++|+.||+|||++.. ..++||++++++++|+.. +.. .+.. +...|...|+.+++.....
T Consensus 87 D~ivi~sP~Y~~~~~~~lK~~iD~~~~----~~l~gK~~~~v~t~G~~~-~~~-~~~~~L~~il~~lg~~vv~~~v~~-- 158 (191)
T 3k1y_A 87 DGLVVATPVFKASYTGLFKMFFDILDT----DALTGMPTIIAATAGSAR-HSL-VLDYALRPLLSYMRAVVVPTGVFA-- 158 (191)
T ss_dssp SEEEEEEECBTTBSCHHHHHHHHHSCT----TTTTTCEEEEEEEESSST-TTT-HHHHTHHHHHHHTTCEECSCCEEE--
T ss_pred CEEEEEcCccCCcCcHHHHHHHHHhhh----hhcCCCEEEEEEeCCCcc-hhh-HHHHHHHHHHHHCCCEEcCcEEEe--
Confidence 999999999999999999999999864 478999999999987753 322 3334 7778888999998754321
Q ss_pred ccccccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040588 196 EMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKF 244 (252)
Q Consensus 196 ~~~~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l 244 (252)
....+.. . -+++..+++++++++++.++++-
T Consensus 159 --------------~~~~f~~--~--~~~~~~~rl~~~~~~~~~~~~~~ 189 (191)
T 3k1y_A 159 --------------ATEDFGG--P--EGAEFNKRIARAAGELASLIVEE 189 (191)
T ss_dssp --------------EGGGCSH--H--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------------chhhcCC--C--CCHHHHHHHHHHHHHHHHHHHhc
Confidence 0001110 0 14667777888888888877653
No 25
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=99.86 E-value=8.7e-22 Score=162.46 Aligned_cols=132 Identities=15% Similarity=0.091 Sum_probs=103.3
Q ss_pred ceEEEEEeCCc--hhHHHHHHHHHHhccccC------CceEEEEECCCCCCHHHHhcc---------cCCCCCCCCcccc
Q 040588 47 LKIFIIFYSMY--GHVEILARRMKKGVDSID------GVEGVLYRVPETLPAEVLEQM---------KVPQKGIEVPVIA 109 (252)
Q Consensus 47 ~kIlIIy~S~~--GnT~~la~~i~~~l~~~~------G~ev~l~~l~~~~p~~~~~~~---------~~~~~~d~~~~~~ 109 (252)
|||||||+|++ |||++|++.+++++++ . |++++++++.+...+.|..+. .|...++++..+
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~-~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIEN-SEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSW- 78 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHT-CTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHH-
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHH-hhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHH-
Confidence 69999999986 9999999999999987 4 789999998864222232221 233323334444
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEec
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVP 188 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~ 188 (252)
.+++.+||+|||+||+||+++|+.+|+|||++.. .++||++++|++ |+.+ + ..++..+...+...|+.+++
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~-----~l~gK~~~~~~~-G~~~-~-~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH-----EWHGKPALVVSY-GGHG-G-SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST-----TTTTCEEEEEEE-ETTT-T-HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh-----hcCCCEEEEEEe-CCcc-h-hhHHHHHHHHHHHCCCEEcc
Confidence 6889999999999999999999999999999863 578999998865 5533 3 34678888899999999987
No 26
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.85 E-value=1.7e-20 Score=151.82 Aligned_cols=162 Identities=14% Similarity=0.137 Sum_probs=117.3
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|||+|+|+|++|||+++|+.|++++.+ . ++++++++.+. ...++.+||.||||+|||
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~-~-~~v~~~~~~~~---------------------~~~~l~~~d~ii~g~pty 57 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGG-E-SIVDLNDIANA---------------------DASDLNAYDYLIIGCPTW 57 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTS-T-TTEEEEEGGGC---------------------CGGGGGGCSEEEEECCEE
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCc-c-cceEEEEhhhC---------------------CHhHHhhCCEEEEEeccc
Confidence 689999999999999999999999986 4 67889988753 145788999999999999
Q ss_pred C-CCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCccCCCcccc-ccC
Q 040588 127 F-GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQ-GG-GQETTAWTAITQLAHHGMVYVPIGYTFGTEMFG-MDS 202 (252)
Q Consensus 127 ~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~-~g-~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~-~~~ 202 (252)
+ |.+|+.++.|++++.. ..++||++++|++++.. .+ ....++..+...|...|+.+++.....+ ..|. ...
T Consensus 58 ~~g~~p~~~~~f~~~l~~----~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g-~~~~~s~~ 132 (169)
T 1czn_A 58 NVGELQSDWEGIYDDLDS----VNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEG-YDFNESKA 132 (169)
T ss_dssp TTTEECHHHHHHGGGGGG----SCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTT-CCCSCCTT
T ss_pred CCCcCCHHHHHHHHHhhh----hccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCC-cceecchh
Confidence 8 6799999999998753 36899999999997663 33 3456788899999999999987411100 0000 000
Q ss_pred CCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 040588 203 LRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAI 240 (252)
Q Consensus 203 ~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~ 240 (252)
+..+...|. .+. ..++++.+.+++++|++.+.+.
T Consensus 133 ~~~~~~~gl-~~~---~~~~~~~~~~~~~~w~~~~~~~ 166 (169)
T 1czn_A 133 VRNNQFVGL-AID---EDNQPDLTKNRIKTWVSQLKSE 166 (169)
T ss_dssp EETTEESSE-EEC---TTTCGGGHHHHHHHHHHHHHHH
T ss_pred eeCCeeeee-eec---CCCccccCHHHHHHHHHHHHHH
Confidence 111111121 121 1346778899999999988654
No 27
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.85 E-value=3.5e-20 Score=149.94 Aligned_cols=163 Identities=17% Similarity=0.163 Sum_probs=115.8
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|||+|||+|++|||+++|+.|++++.+ . +++++++.+. ...++.+||.||||+|||
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~-~--~v~~~~~~~~---------------------~~~~l~~~d~ii~g~p~y 57 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGN-D--VVTLHDVSQA---------------------EVTDLNDYQYLIIGCPTL 57 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCT-T--TEEEEETTTC---------------------CGGGGGGCSEEEEEEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCc-C--CcEEEEcccC---------------------CHHHHhhCCEEEEEEeeC
Confidence 799999999999999999999999976 3 7888898764 145788999999999999
Q ss_pred C-CCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCC
Q 040588 127 F-GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQ-GG-GQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSL 203 (252)
Q Consensus 127 ~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~-~g-~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~ 203 (252)
+ |.+|..++.|++++.. ..++||++++|++++.. .+ ....++..+...|...|+.+++.....+..+..+..+
T Consensus 58 ~~g~~p~~~~~fl~~l~~----~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~ 133 (169)
T 1obo_A 58 NIGELQSDWEGLYSELDD----VDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKAL 133 (169)
T ss_dssp TTTEECHHHHHHHTTGGG----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTE
T ss_pred CCCcCCHHHHHHHHHhhh----cCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhh
Confidence 6 6788889999998764 36899999999997752 23 2446788999999999999987521111000000011
Q ss_pred CCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040588 204 RGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIV 241 (252)
Q Consensus 204 ~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~ 241 (252)
..+...|. .+ +...+++.+.+++++|++.+.+.+
T Consensus 134 ~~~~~~~l-~~---~~~~~~~~~~~~~~~w~~~~~~~l 167 (169)
T 1obo_A 134 RNGKFVGL-AL---DEDNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp ETTEESSE-EE---CTTTCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCceeeE-Ee---eCCCccccCHHHHHHHHHHHHHHh
Confidence 11111121 11 111346778899999998887654
No 28
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=99.85 E-value=9.4e-22 Score=164.34 Aligned_cols=170 Identities=16% Similarity=0.089 Sum_probs=117.7
Q ss_pred CceEEEEEeCCc----hhHHHHHHHHHHhccccCC--ceEEEEECC--CCCCHHHHhc-------------------ccC
Q 040588 46 QLKIFIIFYSMY----GHVEILARRMKKGVDSIDG--VEGVLYRVP--ETLPAEVLEQ-------------------MKV 98 (252)
Q Consensus 46 ~~kIlIIy~S~~----GnT~~la~~i~~~l~~~~G--~ev~l~~l~--~~~p~~~~~~-------------------~~~ 98 (252)
||||||||+|+. |+|.+|++++++++++ .| .++++++|. +...+.|..+ ..|
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~-~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 79 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRE-TNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQ 79 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHH-HCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHH-hCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHH
Confidence 689999999975 8999999999999987 56 899999998 6532222111 011
Q ss_pred CCCCCCCcccchhhhhccCeEEEeccccCCCchHHHHHHHHhhhhh---h------hhccCCCCcEEEEEeeCCCCCChH
Q 040588 99 PQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHL---W------EQQRLAGVPAGFFVSTGTQGGGQE 169 (252)
Q Consensus 99 ~~~~d~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~---~------~~~~l~gK~~~if~s~G~~~g~~~ 169 (252)
.. .+++..+ .+++.+||+|||++|+||+++|+.||+|||++... + ....++||++++|+|+|+..++..
T Consensus 80 ~~-~~~~~~~-~~~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~ 157 (208)
T 2hpv_A 80 QK-VARFNEL-TDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKD 157 (208)
T ss_dssp HH-HHHHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCS
T ss_pred hh-HHHHHHH-HHHHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcc
Confidence 11 1334444 67899999999999999999999999999997531 1 113579999999998876544323
Q ss_pred HHHHHHHHHHHHcCcEEecCCccCCCccccccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 040588 170 TTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAA 239 (252)
Q Consensus 170 ~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~ 239 (252)
.....+...+...|+.+++.-+. ++. +....-.++.++++++.++++++
T Consensus 158 ~~~~~l~~~~~~~G~~~~~~~~~----------------~~~-----~~~~~~~~~~l~~a~~~~~~l~~ 206 (208)
T 2hpv_A 158 FASQYIKAILNFIGVDQVDGLFI----------------EGI-----DHFPDRAEELLNTAMTKATEYGK 206 (208)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEE----------------ECT-----TTCGGGHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCeeeEEEE----------------ccc-----cCCHHHHHHHHHHHHHHHHHHHh
Confidence 34566777788889987753111 010 00001235677888888888765
No 29
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.85 E-value=5.7e-21 Score=175.68 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=116.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
..+|+|+|+|++|||++||++|++++.+ .|+++.++++.+.. ..+.+++ ..++.+||+|||||||
T Consensus 265 ~~~v~I~Y~S~yGnTe~mA~~ia~gl~~-~Gv~~~~~~~~d~~-------------~~~~s~i-~~~i~~~~~ivlGspT 329 (410)
T 4dik_A 265 KGKVTVIYDSMYGFVENVMKKAIDSLKE-KGFTPVVYKFSDEE-------------RPAISEI-LKDIPDSEALIFGVST 329 (410)
T ss_dssp TTEEEEEEECSSSHHHHHHHHHHHHHHH-TTCEEEEEEECSSC-------------CCCHHHH-HHHSTTCSEEEEEECC
T ss_pred ccceeeEEecccChHHHHHHHHHHHHHh-cCCceEEEEeccCC-------------CCCHHHH-HHHHHhCCeEEEEeCC
Confidence 3589999999999999999999999999 89999888877642 1234455 6789999999999999
Q ss_pred cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCCC
Q 040588 126 RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRG 205 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~~ 205 (252)
|++++.++|..|++.+..+ .++||++++|+||||.+ + ++..+.+.|...|+.+++....
T Consensus 330 ~~~~~~p~~~~~l~~l~~~----~~~~K~~~~FGSyGWsg-~---a~~~~~~~l~~~~~~~v~~~~~------------- 388 (410)
T 4dik_A 330 YEAEIHPLMRFTLLEIIDK----ANYEKPVLVFGVHGWAP-S---AERTAGELLKETKFRILSFTEI------------- 388 (410)
T ss_dssp TTSSSCHHHHHHHHHHHHH----CCCCCEEEEEEECCCCC-T---TSCCHHHHHTTSSCEEEEEEEE-------------
T ss_pred cCCcCCHHHHHHHHHHHhc----ccCCCEEEEEECCCCCc-H---HHHHHHHHHHHCCCEEECcEEE-------------
Confidence 9999999999999987653 67899999999999953 2 3567888889999999864321
Q ss_pred CCccccceecCCCCCCCCHHHHHHHHHHHHHH
Q 040588 206 GSPYGAGVFSGDGTRKPTETELALAEHQGKYM 237 (252)
Q Consensus 206 ~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~l 237 (252)
. ...++++++++|.+++++-
T Consensus 389 ---------~---~~~~de~~lee~~~~~~~~ 408 (410)
T 4dik_A 389 ---------K---GSNMDERKIEEAISLLKKE 408 (410)
T ss_dssp ---------C---STTCCHHHHHHHHHHHHHH
T ss_pred ---------E---CCCCCHHHHHHHHHHHHHh
Confidence 0 1357888888888887653
No 30
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=99.85 E-value=3.9e-21 Score=159.72 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=126.8
Q ss_pred CceEEEEEeCC--chhHHHHHHHHHHhccccCCceEE-EEECCCCCCHHHHhc-ccCCCCCCCCcccchhhhhccCeEEE
Q 040588 46 QLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGV-LYRVPETLPAEVLEQ-MKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 46 ~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~-l~~l~~~~p~~~~~~-~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
+|||++|++|+ .++|+++++++++.+ + .|++++ ++++.+. |..+... ..|.. .+++..+ .+.+.+||+|||
T Consensus 4 ~mkil~I~GS~r~~s~t~~l~~~~~~~~-~-~g~~v~~~idL~~l-P~~~~~~~~~~~~-~~~~~~l-~~~i~~AD~iv~ 78 (193)
T 3svl_A 4 KLQVVTLLGSLRKGSFNGMVARTLPKIA-P-ASMEVNALPSIADI-PLYDADVQQEEGF-PATVEAL-AEQIRQADGVVI 78 (193)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHGGGTS-C-TTEEEEECCCSTTC-CCCCHHHHHHTCS-CHHHHHH-HHHHHHSSEEEE
T ss_pred CCEEEEEEccCCCCCHHHHHHHHHHHHc-c-CCCEEEEEEeHHHC-CCCCcccccccCC-CHHHHHH-HHHHHHCCEEEE
Confidence 58999999996 689999999987755 4 689999 8899883 4211111 12322 2344454 789999999999
Q ss_pred eccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCcccccc
Q 040588 122 GFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMD 201 (252)
Q Consensus 122 gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~ 201 (252)
+||+||+++|+.+|+|||++.. +....++||++++++++|+..|+. .+..+++..|...|+.+++.+...
T Consensus 79 ~sP~y~~~~~~~lK~~iD~~~~-~~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~~~~~-------- 148 (193)
T 3svl_A 79 VTPEYNYSVPGGLKNAIDWLSR-LPDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNKPEFM-------- 148 (193)
T ss_dssp EECCBTTBCCHHHHHHHHHHHT-STTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCSSCEE--------
T ss_pred EecccCCCCCHHHHHHHHHHhh-cCccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCCCeEe--------
Confidence 9999999999999999999864 222468999999998865544443 467888889999999998643110
Q ss_pred CCCCCCccccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 040588 202 SLRGGSPYGAGVFSGD-GTRKPTETELALAEHQGKYMAAIVKKFSH 246 (252)
Q Consensus 202 ~~~~~~~~G~~~~~~~-~~~~pde~~l~~a~~~g~~la~~~~~l~~ 246 (252)
.+.. ...+..+ |. ..|++..+.++.+.++++.++++++.
T Consensus 149 ---~~~~--~~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~~ 188 (193)
T 3svl_A 149 ---GGVI--QNKVDPQTGE-VIDQGTLDHLTGQLTAFGEFIQRVKI 188 (193)
T ss_dssp ---ETTG--GGGEETTTTE-ECCHHHHHHHHHHHHHHHHHTC----
T ss_pred ---ecch--hhhcCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000 0113222 33 35788999999999999998877653
No 31
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.84 E-value=6.1e-21 Score=154.72 Aligned_cols=150 Identities=14% Similarity=0.025 Sum_probs=113.0
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 43 TTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
...|||++|+|+|++|||+++|+.|++++.+ .|++++++++.+. ...++.++|.||||
T Consensus 6 ~~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~ii~g 63 (167)
T 1ykg_A 6 AAEMPGITIISASQTGNARRVAEALRDDLLA-AKLNVKLVNAGDY---------------------KFKQIASEKLLIVV 63 (167)
T ss_dssp ------CEEEEECSSSHHHHHHHHHHHHHHH-HTCCCEEEEGGGC---------------------CGGGGGGCSEEEEE
T ss_pred CCCCCeEEEEEECCchHHHHHHHHHHHHHHH-CCCceEEeehhhC---------------------CHHHhccCCeEEEE
Confidence 3447899999999999999999999999987 6888999988753 24567889999999
Q ss_pred cccc-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCcccccc
Q 040588 123 FPTR-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMD 201 (252)
Q Consensus 123 sP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~ 201 (252)
+||| +|.+|..++.|++.+... ....+++|++++|++++...++...+...+.+.|...|+.++....
T Consensus 64 ~pt~g~G~~p~~~~~f~~~l~~~-~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~---------- 132 (167)
T 1ykg_A 64 TSTQGEGEPPEEAVALHKFLFSK-KAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRV---------- 132 (167)
T ss_dssp EECBGGGBCCGGGHHHHHHHTST-TCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCE----------
T ss_pred EcccCCCcCChhHHHHHHHHHhc-cccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecce----------
Confidence 9999 899999999999987531 0125789999999975432333345678899999999998875321
Q ss_pred CCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040588 202 SLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKF 244 (252)
Q Consensus 202 ~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l 244 (252)
..|+++.+.+++|+++|++.++..
T Consensus 133 -------------------~~d~~~~~~~~~w~~~l~~~l~~~ 156 (167)
T 1ykg_A 133 -------------------DADVEYQAAASEWRARVVDALKSR 156 (167)
T ss_dssp -------------------EECTTCHHHHHHHHHHHHHHHHTC
T ss_pred -------------------ecCCCcHHHHHHHHHHHHHHHHhh
Confidence 122346788899999998887653
No 32
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.84 E-value=6.4e-21 Score=157.81 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=103.2
Q ss_pred CceEEEEEeCCc---hhHHHHHHHHHHhccccCC--ceEEEEECCCC-CCH--HHHhc--ccCCCC-----CCC---Ccc
Q 040588 46 QLKIFIIFYSMY---GHVEILARRMKKGVDSIDG--VEGVLYRVPET-LPA--EVLEQ--MKVPQK-----GIE---VPV 107 (252)
Q Consensus 46 ~~kIlIIy~S~~---GnT~~la~~i~~~l~~~~G--~ev~l~~l~~~-~p~--~~~~~--~~~~~~-----~d~---~~~ 107 (252)
||||||||+|+. |||++|++.+++++++ .| ++++++++.+. .|. .|..+ ..|... .|+ +..
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~-~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 79 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWRE-KHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDE 79 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHH-HCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHH-hCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 689999999985 9999999999999987 55 89999999876 221 22211 112110 011 223
Q ss_pred cchhhhhccCeEEEeccccCCCchHHHHHHHHhhhhh-hh--------hccCCCCcEEEEEeeCCCCCCh--HHHHHHHH
Q 040588 108 IAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHL-WE--------QQRLAGVPAGFFVSTGTQGGGQ--ETTAWTAI 176 (252)
Q Consensus 108 ~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~-~~--------~~~l~gK~~~if~s~G~~~g~~--~~~l~~l~ 176 (252)
+ .+++.+||+|||++|+||+++|+.||+|||++... |. ...++||++++|+++|+..++. +.+...+.
T Consensus 80 ~-~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~ 158 (201)
T 1t5b_A 80 L-IAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLK 158 (201)
T ss_dssp H-HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHH
T ss_pred H-HHHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHH
Confidence 3 57899999999999999999999999999998632 10 1358999999999988753331 22456677
Q ss_pred HHHHHcCcEEecC
Q 040588 177 TQLAHHGMVYVPI 189 (252)
Q Consensus 177 ~~l~~~G~~vv~~ 189 (252)
..+...|+.+++.
T Consensus 159 ~~l~~~G~~~~~~ 171 (201)
T 1t5b_A 159 VFLGFIGITDVNF 171 (201)
T ss_dssp HHHHHTTCCCEEE
T ss_pred HHHhhcCcceeEE
Confidence 7888889988754
No 33
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=99.74 E-value=1.5e-22 Score=168.98 Aligned_cols=180 Identities=15% Similarity=0.138 Sum_probs=128.1
Q ss_pred CCceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEE-ECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE
Q 040588 45 GQLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLY-RVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 45 ~~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~-~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
.+|||++||+|+ .|+|+++++++++.+.+ |++++++ ++.+ +|..|.....|.. .+++..+ .+++.+||+|||
T Consensus 5 ~~mkIliI~gS~r~~s~t~~la~~~~~~~~~--g~~v~~i~dl~~-lp~~~~~~~~~~~-~~~~~~~-~~~i~~AD~iIi 79 (199)
T 3s2y_A 5 SPLHFVTLLGSLRKASFNAAVARALPEIAPE--GIAITPLGSIGT-FPHYSQDVQEEGF-PAPVLTM-AQQIATADAVVI 79 (199)
Confidence 457999999997 48999999999999975 8899999 9987 3432222222322 2445555 788999999999
Q ss_pred eccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecC-CccCCCccccc
Q 040588 122 GFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPI-GYTFGTEMFGM 200 (252)
Q Consensus 122 gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~-~~~~~~~~~~~ 200 (252)
+||+||+++|+.||+|||++...+.. .++||++++|+++|+..|+ ..+...++..|...|+.+++. .+.+.
T Consensus 80 ~tP~Y~~s~p~~lK~~iD~l~~~~~~-~l~gK~v~~v~tsgg~~g~-~~a~~~Lr~~l~~lg~~~v~~~~v~i~------ 151 (199)
T 3s2y_A 80 VTPEYNYSVPGVLKNAIDWLSRVSPQ-PLAGKPVALVTASPGMIGG-ARAQYHLRQSLVFLDAYVLNRPEAMIG------ 151 (199)
Confidence 99999999999999999998754322 5899999999976543343 235677888888899998865 32210
Q ss_pred cCCCCCCccccceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 040588 201 DSLRGGSPYGAGVFSGD-GTRKPTETELALAEHQGKYMAAIVKKFSH 246 (252)
Q Consensus 201 ~~~~~~~~~G~~~~~~~-~~~~pde~~l~~a~~~g~~la~~~~~l~~ 246 (252)
.. ...|..+ |. ..|++..+.++.+.+++++++++.+.
T Consensus 152 ------~~--~~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~~ 189 (199)
T 3s2y_A 152 ------QV--TGKVDAQTLE-LSDVATREFLARQLDALAALARTLSP 189 (199)
Confidence 00 0112222 32 33566778888888888888766543
No 34
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.83 E-value=4.8e-20 Score=167.85 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=123.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
.+||+|+|+|++|||+++|++|++++.+ .|++++++++.+.. ..++ .+++.+||+||||+|+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~-~g~~v~~~~~~~~~----------------~~~~-~~~~~~~d~ii~gsp~ 313 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRD-EGCTVKLMWCKACH----------------HSQI-MSEISDAGAVIVGSPT 313 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEETTTSC----------------HHHH-HHHHHTCSEEEEECCC
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHh-CCCeEEEEECCCCC----------------HHHH-HHHHHHCCEEEEECCc
Confidence 4799999999999999999999999987 78899999998642 1122 4678999999999999
Q ss_pred cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCCC
Q 040588 126 RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRG 205 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~~ 205 (252)
|++++++.++.|++++... .++||++++|+++|+. ..++..+...|...|+.+++.++.
T Consensus 314 ~~~~~~~~~~~~l~~l~~~----~l~~k~~~~f~t~g~~----~~a~~~l~~~l~~~G~~~~~~~~~------------- 372 (402)
T 1e5d_A 314 HNNGILPYVAGTLQYIKGL----RPQNKIGGAFGSFGWS----GESTKVLAEWLTGMGFDMPATPVK------------- 372 (402)
T ss_dssp BTTBCCHHHHHHHHHHHHT----CCCSCEEEEEEEESSS----CHHHHHHHHHHHHTTCBCCSCCEE-------------
T ss_pred cCCCchHHHHHHHHHhhhc----ccCCCEEEEEEcCCCc----cHHHHHHHHHHHHCCCEEecCceE-------------
Confidence 9999999999999998642 5799999999998763 235778889999999988764321
Q ss_pred CCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040588 206 GSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKF 244 (252)
Q Consensus 206 ~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l 244 (252)
+ ...|++++++.++++++++++.+++.
T Consensus 373 --------~----~~~p~~~~~~~~~~~~~~l~~~l~~~ 399 (402)
T 1e5d_A 373 --------V----KNVPTHADYEQLKTMAQTIARALKAK 399 (402)
T ss_dssp --------E----ESSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------E----eeCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 1 13689999999999999999988653
No 35
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.83 E-value=4.6e-20 Score=167.76 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=120.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
.+|++|+|+|++|||+++|+++++++.+ .|++++++++.+.. ...+ .+++.+||+||||+|+
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~-~g~~v~~~~~~~~~----------------~~~~-~~~~~~~d~ii~g~p~ 312 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVA-GGCEVKLFKLSVSD----------------RNDV-IKEILDARAVLVGSPT 312 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEEGGGSC----------------HHHH-HHHHHHCSEEEEECCC
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHh-cCCeEEEEECCCCC----------------HHHH-HHHHHHCCEEEEECCc
Confidence 4799999999999999999999999987 78899999987542 1122 4678899999999999
Q ss_pred cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC-ccCCCccccccCCC
Q 040588 126 RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG-YTFGTEMFGMDSLR 204 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~-~~~~~~~~~~~~~~ 204 (252)
|++++++.+++||+++... .++||++++|+++||. ++ ++..+...|...|+.+++.+ +.
T Consensus 313 y~~~~~~~~~~~l~~l~~~----~~~~k~~~~~~s~g~~-~~---a~~~l~~~l~~~g~~~~~~~~~~------------ 372 (398)
T 1ycg_A 313 INNDILPVVSPLLDDLVGL----RPKNKVGLAFGAYGWG-GG---AQKILEERLKAAKIELIAEPGPT------------ 372 (398)
T ss_dssp BTTBCCGGGHHHHHHHHHH----CCSSCEEEEEEEESSS-CC---HHHHHHHHHHHTTCEESCSSCCE------------
T ss_pred cCccchHHHHHHHHHHhcc----ccCCCEEEEEEeCCCc-hH---HHHHHHHHHHHCCeEEecCceEE------------
Confidence 9999999999999998642 5799999999999873 33 46778889999999998753 32
Q ss_pred CCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040588 205 GGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIV 241 (252)
Q Consensus 205 ~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~ 241 (252)
+ ...|+++++++++++++++++.+
T Consensus 373 ---------~----~~~p~~~~~~~~~~~~~~l~~~~ 396 (398)
T 1ycg_A 373 ---------V----QWVPRGEDLQRCYELGRKIAARI 396 (398)
T ss_dssp ---------E----ESSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------E----ecCCCHHHHHHHHHHHHHHHHHH
Confidence 1 13588999999999999999875
No 36
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=99.82 E-value=1.5e-19 Score=149.84 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=124.7
Q ss_pred CCceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 45 GQLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 45 ~~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
+|+||+||.+|. .++++++|+++++.+. .+++++++++.+. |...... ... ..+....+ .+.+.+||+|||+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~--~~~~~~~idl~dL-P~~~~d~-~~~-~p~~~~~l-~~~i~~aD~~ii~ 74 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAE--GRLEFHLLHIGDL-PHYNDDL-WAD-APESVLRL-KDRIEHSDAVLAI 74 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHT--TTEEEEECCGGGS-CCCCGGG-GGG-CCHHHHHH-HHHHHTSSEEEEE
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhcc--CCCEEEEEecccC-CCCCCCc-ccC-CCHHHHHH-HHHHHhCCcEEEe
Confidence 456799999994 5678999999988776 4889999998873 3100000 000 00011122 5789999999999
Q ss_pred ccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccC
Q 040588 123 FPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDS 202 (252)
Q Consensus 123 sP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~ 202 (252)
||+|++++|+.+|++||.+...+....|.||++++++++++..|+. .+...++..|...|+.+++.+... +
T Consensus 75 tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~~~p~~~---i----- 145 (190)
T 3u7r_A 75 TPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMMSMPEAY---I----- 145 (190)
T ss_dssp CCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEECCCSCCE---E-----
T ss_pred chhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEccCCEEE---E-----
Confidence 9999999999999999998654444578999999998876655554 467788888889999888642110 0
Q ss_pred CCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040588 203 LRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKF 244 (252)
Q Consensus 203 ~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l 244 (252)
......+..+|. ..|++..+.++.+.+++++++++.
T Consensus 146 -----~~~~~~fd~~G~-l~de~~~~~l~~~~~~~~~~i~~~ 181 (190)
T 3u7r_A 146 -----QWHAEAYAADGS-VTDEKTAKFLQGFVDAFVDWIEKH 181 (190)
T ss_dssp -----ECCGGGBCTTSC-BCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----eccHhcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHc
Confidence 000111322332 357888899999999999998874
No 37
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.82 E-value=3.4e-19 Score=145.37 Aligned_cols=163 Identities=20% Similarity=0.185 Sum_probs=115.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|||+|||+|++|||+++|+.|++.+.+ . .++++++.+. ...++.+||.||||+|||
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~-~--~v~i~~~~~~---------------------~~~~l~~~d~ii~g~pt~ 56 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGK-D--VADVHDIAKS---------------------SKEDLEAYDILLLGIPTW 56 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCT-T--TEEEEEGGGC---------------------CHHHHHTCSEEEEECCEE
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhcc-C--ceEEEEcccC---------------------ChhHhhhCCEEEEEEeec
Confidence 699999999999999999999999976 3 5778887653 246788999999999997
Q ss_pred -CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCC-C-ChHHHHHHHHHHHHHcCcEEecCCccCCCcccc-ccC
Q 040588 127 -FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQG-G-GQETTAWTAITQLAHHGMVYVPIGYTFGTEMFG-MDS 202 (252)
Q Consensus 127 -~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~-g-~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~-~~~ 202 (252)
.|.+|..++.|++.+.. ..++||++++|++++..+ + ....++..+.+.|...|+.+++.....+ ..|. +..
T Consensus 57 ~~G~~p~~~~~f~~~l~~----~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g-~~~~~s~~ 131 (175)
T 1ag9_A 57 YYGEAQCDWDDFFPTLEE----IDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAG-YHFEASKG 131 (175)
T ss_dssp TTTEECHHHHHHHHHHTT----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTT-CCCSCCSC
T ss_pred CCCcChHHHHHHHhhhhh----cccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCC-cccccchh
Confidence 58899999999998753 368999999999965431 1 1235788899999999999987421111 0000 000
Q ss_pred CC-CCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040588 203 LR-GGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVK 242 (252)
Q Consensus 203 ~~-~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~ 242 (252)
+. .+.+.|. .+. ..++++.+.+++.+|++.|.+.+.
T Consensus 132 ~~~~~~~~gl-~~~---~~~~~~~~~~~i~~w~~~i~~~~~ 168 (175)
T 1ag9_A 132 LADDDHFVGL-AID---EDRQPELTAERVEKWVKQISEELH 168 (175)
T ss_dssp EEETTEESSE-EEC---TTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeCCeEEee-ecC---CCCcccccHHHHHHHHHHHHHHhh
Confidence 00 0111121 121 124667888999999999877653
No 38
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.82 E-value=5.4e-20 Score=150.89 Aligned_cols=165 Identities=19% Similarity=0.136 Sum_probs=114.5
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||||+|+|+|++|||+++|+.|++.+.+ . ++++++++.+. ...++.+||.||||+||
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~-~-~~v~~~~~~~~---------------------~~~~l~~~d~ii~g~pt 57 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDD-E-VMAKPLNVNRA---------------------DVADFMAYDFLILGTPT 57 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCT-T-TBCCCEEGGGC---------------------CHHHHHHCSEEEEEEEC
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhcc-c-CceEEEEcccC---------------------CHHHHhhCCeEEEEEee
Confidence 6899999999999999999999999976 4 56777777653 24678899999999999
Q ss_pred cC-CCch--------HHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCccCC
Q 040588 126 RF-GSMA--------SQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQ-GG-GQETTAWTAITQLAHHGMVYVPIGYTFG 194 (252)
Q Consensus 126 y~-g~~~--------~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~-~g-~~~~~l~~l~~~l~~~G~~vv~~~~~~~ 194 (252)
|+ |.+| ..++.|++++.. ..++||++++|++++.. .+ ....+...+...|...|+.+++.....+
T Consensus 58 y~~G~~pg~~~~~~~~~~~~f~~~l~~----~~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g 133 (182)
T 2wc1_A 58 LGDGQLPGLSANAASESWEEFLPRIAD----QDFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKG 133 (182)
T ss_dssp BTTTBCSSGGGTCSSCCHHHHGGGGTT----CCCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTT
T ss_pred CCCCCCCccccccchhHHHHHHHHhhh----ccCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCC
Confidence 99 8888 889999998764 36889999999997642 22 2234678899999999999987522111
Q ss_pred Ccccc-ccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040588 195 TEMFG-MDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVK 242 (252)
Q Consensus 195 ~~~~~-~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~ 242 (252)
..|. ...+..+.+.|. .. +. ...++.+.++++.|.+.|.+.+.
T Consensus 134 -~~~~~~~~~~~~~~~gl-~~--d~-~~~~~~~~~~~~~w~~~l~~~l~ 177 (182)
T 2wc1_A 134 -YGFEDSLAVVEGEFLGL-AL--DQ-DNQAALTPERLKGWLSLIAADFG 177 (182)
T ss_dssp -SCCSCCTTEETTEESSE-EE--CT-TTCGGGHHHHHHHHHHHTHHHHT
T ss_pred -cCcccchhhhcCceeee-ec--cC-CCCccccHHHHHHHHHHHHHHHh
Confidence 0011 001111111221 11 11 11224467888888888876553
No 39
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.82 E-value=1.6e-19 Score=145.73 Aligned_cols=128 Identities=17% Similarity=0.275 Sum_probs=89.9
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC--CCHHHHhc----ccCCC--CCC-CCccc--chh
Q 040588 43 TTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET--LPAEVLEQ----MKVPQ--KGI-EVPVI--AVD 111 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~--~p~~~~~~----~~~~~--~~d-~~~~~--~~~ 111 (252)
|+.|+||+|||+|++|||+++|+.|++.+.. +++++... .|...+.. .+|.. .++ ..|.+ ...
T Consensus 1 ~M~~~kilIvY~S~tG~T~~vA~~Ia~~l~~------~~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~ 74 (162)
T 3klb_A 1 GMNDRKILVAYFSCSGVTKAVAEKLAAITGA------DLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLF 74 (162)
T ss_dssp CGGGSCEEEEECCSSSHHHHHHHHHHHHHTC------EEEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCS
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHHhCC------CeEEEEeCCcCCccccchhhHHHHHHHHHhccccCcccccccc
Confidence 5668899999999999999999999999853 34554432 11100000 00000 000 12222 146
Q ss_pred hhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEe
Q 040588 112 DLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYV 187 (252)
Q Consensus 112 ~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv 187 (252)
++.+||.||||+|+|++++|+.++.||+++ .++||++++|+|+|+. +...++..+.+.+. +..++
T Consensus 75 ~l~~yd~iilG~P~~~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~--~~g~~~~~l~~~l~--~~~~~ 139 (162)
T 3klb_A 75 HPEKYEVLFVGFPVWWYIAPTIINTFLESY-------DFAGKIVVPFATSGGS--GIGNCEKNLHKAYP--DIVWK 139 (162)
T ss_dssp CGGGCSEEEEEEECBTTBCCHHHHHHHHTS-------CCTTCEEEEEEECSSC--CSHHHHHHHHHHCT--TSEEC
T ss_pred ChhhCCEEEEEcccccCCCCHHHHHHHHhc-------CCCCCEEEEEEEeCCC--CccHHHHHHHHHcC--CCEee
Confidence 789999999999999999999999999985 5799999999999884 33456777877764 56655
No 40
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.81 E-value=2.8e-19 Score=146.43 Aligned_cols=162 Identities=17% Similarity=0.113 Sum_probs=114.8
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|||+|+|+|++|||+++|+.|++++.+ +.+++++++.+. ...++.+||.||||+|||
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~--~~~v~~~~~~~~---------------------~~~~l~~~d~iilg~pt~ 57 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD--ETMSDALNVNRV---------------------SAEDFAQYQFLILGTPTL 57 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT--TTBCCCEEGGGC---------------------CHHHHHTCSEEEEEEECB
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC--CCceEEEEhhhC---------------------CHHHHhcCCEEEEEeccC
Confidence 589999999999999999999999975 456777777653 256788999999999999
Q ss_pred C-CCch--------HHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCccCCC
Q 040588 127 F-GSMA--------SQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQ-GG-GQETTAWTAITQLAHHGMVYVPIGYTFGT 195 (252)
Q Consensus 127 ~-g~~~--------~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~-~g-~~~~~l~~l~~~l~~~G~~vv~~~~~~~~ 195 (252)
+ |.+| ..++.|++++.. ..++||++++|++++.. .+ ....++..+.+.|...|+.+++.....+
T Consensus 58 ~~G~~pg~~~~~~~~~~~~fl~~l~~----~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g- 132 (179)
T 1yob_A 58 GEGELPGLSSDAENESWEEFLPKIEG----LDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDG- 132 (179)
T ss_dssp TTTBCSSGGGTCSSCCHHHHHHHHTT----CCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTT-
T ss_pred CCCcCCcccccccchHHHHHHHHhhh----cccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCC-
Confidence 9 8999 899999998753 36899999999996543 22 2345788899999999999987532211
Q ss_pred cccc-ccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 040588 196 EMFG-MDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAI 240 (252)
Q Consensus 196 ~~~~-~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~ 240 (252)
..|+ +..+..+.+.|. .+. . ..+++.+.++++++.+.+...
T Consensus 133 ~~~~~s~~~~~~~f~gl-~~d--~-~~~~~~~~~~i~~w~~~l~~~ 174 (179)
T 1yob_A 133 YEFESSEAVVDGKFVGL-ALD--L-DNQSGKTDERVAAWLAQIAPE 174 (179)
T ss_dssp CCCSCCTTBSSSSBSSE-EEC--T-TTCGGGHHHHHHHHHHHHGGG
T ss_pred CCcccchhhhcCceecc-ccC--C-CCCCcccHHHHHHHHHHHHHH
Confidence 1111 112222222232 121 1 124456788888888877543
No 41
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.80 E-value=2.8e-21 Score=153.26 Aligned_cols=141 Identities=16% Similarity=0.108 Sum_probs=106.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|||++|+|+|++|||+++|+.|++++.+ .|+++++++..+ ..++.++|.||||+||
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~-----------------------~~~l~~~d~vi~g~pt 56 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEE-AGFTTETLHGPL-----------------------LEDLPASGIWLVISST 56 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHH-TTCCEEEECCTT-----------------------SCSSCSEEEEEEECCT
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHH-CCCceEEecCCC-----------------------HHHcccCCeEEEEECc
Confidence 6899999999999999999999999987 788888775432 3456789999999999
Q ss_pred c-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe----eCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccc
Q 040588 126 R-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS----TGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGM 200 (252)
Q Consensus 126 y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s----~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~ 200 (252)
| +|.+|+.++.|++.+... ...+++|++++|++ ++|.. .+...+.+.|...|+.++......
T Consensus 57 ~g~g~~p~~~~~f~~~l~~~--~~~l~~~~~avfg~G~~~y~~~~----~a~~~l~~~l~~~G~~~~~~~~~~------- 123 (147)
T 2hna_A 57 HGAGDIPDNLSPFYEALQEQ--KPDLSAVRFGAIGIGSREYDTFC----GAIDKLEAELKNSGAKQTGETLKI------- 123 (147)
T ss_dssp TTTCCTTSSCHHHHHHHHHH--CCCTTEEEEEEESCCHHHHSCSS----SCTTHHHHHHHHHTCEECSSCBCC-------
T ss_pred cCCCCCChhHHHHHHHHHhh--ccccCCCEEEEEecccCCHHHHH----HHHHHHHHHHHHcCCeEeeeeEEE-------
Confidence 9 899999999999987531 11578899999984 33321 235567888888999888653321
Q ss_pred cCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040588 201 DSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIV 241 (252)
Q Consensus 201 ~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~ 241 (252)
+..|++++.+.++++++++++.+
T Consensus 124 ------------------d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 124 ------------------NILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp ------------------CCSSCCSSCSCCHHHHHHHHHHH
T ss_pred ------------------ecCCCCCcHHHHHHHHHHHHHHh
Confidence 12344556677788888887654
No 42
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=99.79 E-value=7.1e-19 Score=146.24 Aligned_cols=139 Identities=19% Similarity=0.198 Sum_probs=101.4
Q ss_pred ceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCC-----CCCCCcccchhhhhccCeE
Q 040588 47 LKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQ-----KGIEVPVIAVDDLVHADGL 119 (252)
Q Consensus 47 ~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~-----~~d~~~~~~~~~l~~aD~I 119 (252)
||||||++|+ .++|.+|++++++++ + .|.++++++|.+..+..|+.+..|.. ..+++..+ .++|.+||+|
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~-~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~l~~AD~i 77 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-S-KEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKY-RDLVTWADHL 77 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-C-TTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHH-HHHHHHCSEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-c-CCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHH-HHHHHhCCEE
Confidence 7999999997 578999999999999 6 79999999998764333544433321 23445554 7889999999
Q ss_pred EEeccccCCCchHHHHHHHHhhhhh-h--------hhccCCCCcEEEEEeeCCC--CC--ChHHHHHHHHHHHHHcCcEE
Q 040588 120 LFGFPTRFGSMASQMKAFFDSTFHL-W--------EQQRLAGVPAGFFVSTGTQ--GG--GQETTAWTAITQLAHHGMVY 186 (252)
Q Consensus 120 I~gsP~y~g~~~~~~k~fld~l~~~-~--------~~~~l~gK~~~if~s~G~~--~g--~~~~~l~~l~~~l~~~G~~v 186 (252)
||++|+||+++|+.||+|||++... | ..+.|+||++.+++|+|+. .. +.......+...+...|+..
T Consensus 78 V~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~~ 157 (196)
T 3lcm_A 78 IFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAISP 157 (196)
T ss_dssp EEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCCC
T ss_pred EEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCce
Confidence 9999999999999999999998532 1 0136899999999998875 10 00001134555566677766
Q ss_pred ec
Q 040588 187 VP 188 (252)
Q Consensus 187 v~ 188 (252)
++
T Consensus 158 ~~ 159 (196)
T 3lcm_A 158 VK 159 (196)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 43
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.79 E-value=9.1e-19 Score=142.67 Aligned_cols=128 Identities=16% Similarity=0.286 Sum_probs=88.1
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCC--CHHHHh----cccCC---CCCCCCccc--chh
Q 040588 43 TTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETL--PAEVLE----QMKVP---QKGIEVPVI--AVD 111 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~--p~~~~~----~~~~~---~~~d~~~~~--~~~ 111 (252)
.+.|||++|||+|.+|||+++|+.|++.+.. +++++.... +...+. ..+|. ...+..|.+ ...
T Consensus 10 ~~~~mkilIvY~S~tGnT~~vA~~Ia~~l~~------d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~ 83 (171)
T 4ici_A 10 KHSNSKILVAYFSATGTTARAAEKLGAAVGG------DLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKE 83 (171)
T ss_dssp ---CCCEEEEECCSSSHHHHHHHHHHHHHTC------EEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCT
T ss_pred ccCCCCEEEEEECCCChHHHHHHHHHHHhCC------CeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccc
Confidence 3557899999999999999999999999853 455655432 110000 00000 001112222 136
Q ss_pred hhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEe
Q 040588 112 DLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYV 187 (252)
Q Consensus 112 ~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv 187 (252)
++.+||.||||+|+|++++|+.++.||+++ .++||++++|+|+|+.. ...++..+.+.|. +..+.
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~--~g~a~~~l~~~l~--~~~~~ 148 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRIINTFIEGH-------SLKGKTVVPFATSGGSS--IGNSATVLKKTYP--DLNWK 148 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHHHHHHHHS-------CCTTSEEEEEEECSSCC--SHHHHHHHHHHST--TSEEC
T ss_pred cHhHCCEEEEecccccCCchHHHHHHHHHc-------CCCcCEEEEEEecCCCC--cchHHHHHHHHcC--CCeec
Confidence 789999999999999999999999999986 57899999999998742 3456777877764 45543
No 44
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=99.79 E-value=2.7e-19 Score=156.13 Aligned_cols=117 Identities=14% Similarity=0.150 Sum_probs=91.2
Q ss_pred CceEEEEEeCCc--hhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCC----------------------C
Q 040588 46 QLKIFIIFYSMY--GHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQ----------------------K 101 (252)
Q Consensus 46 ~~kIlIIy~S~~--GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~----------------------~ 101 (252)
||||||||+|+. |+|.+|++++++++++ .|.+|++++|.+.....|+.+..|.. .
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~-~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKK-KGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHL 80 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHH-TTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCB
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHh-CCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccC
Confidence 789999999974 7999999999999988 89999999999864323444433321 0
Q ss_pred CCCCcccchhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhh---------hccCCCCcEEEEEeeCCC
Q 040588 102 GIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWE---------QQRLAGVPAGFFVSTGTQ 164 (252)
Q Consensus 102 ~d~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~---------~~~l~gK~~~if~s~G~~ 164 (252)
.+++..+ .++|.+||+|||++|+||+++|+.||.|||++..... .+.++||++.+++|+|+.
T Consensus 81 ~dd~~~~-~~~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~ 151 (273)
T 1d4a_A 81 SPDIVAE-QKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGS 151 (273)
T ss_dssp CHHHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSC
T ss_pred cHHHHHH-HHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCC
Confidence 1233333 5679999999999999999999999999999854211 246899999999998764
No 45
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=99.79 E-value=3.2e-19 Score=149.68 Aligned_cols=142 Identities=22% Similarity=0.164 Sum_probs=100.6
Q ss_pred CceEEEEEeCCc---hhHHHHHHHHHHhccccC--CceEEEEECCCC-CCH--HH-HhcccC-CCC------CC---CCc
Q 040588 46 QLKIFIIFYSMY---GHVEILARRMKKGVDSID--GVEGVLYRVPET-LPA--EV-LEQMKV-PQK------GI---EVP 106 (252)
Q Consensus 46 ~~kIlIIy~S~~---GnT~~la~~i~~~l~~~~--G~ev~l~~l~~~-~p~--~~-~~~~~~-~~~------~d---~~~ 106 (252)
|||||||++|+. |+|.+|++.+++++++ . |.++++++|.+. .|. .| ..+..| ... .+ .+.
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~-~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYRE-AHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSD 79 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHH-HCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHH
Confidence 789999999974 5799999999999987 5 889999999876 331 11 112122 110 00 123
Q ss_pred ccchhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhh-----h--------hccCCCCcEEEEEeeCC--CCCCh---
Q 040588 107 VIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLW-----E--------QQRLAGVPAGFFVSTGT--QGGGQ--- 168 (252)
Q Consensus 107 ~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~-----~--------~~~l~gK~~~if~s~G~--~~g~~--- 168 (252)
.+ .++|.+||+|||++|+||+++|+.||+|||++...- . .+.++||++.+++|+|. ..++.
T Consensus 80 ~~-~~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~ 158 (212)
T 3r6w_A 80 QL-VGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQ 158 (212)
T ss_dssp HH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTG
T ss_pred HH-HHHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCC
Confidence 33 578999999999999999999999999999984310 0 24689999999999873 21111
Q ss_pred --HHHHHHHHHHHHHcCcEEecC
Q 040588 169 --ETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 169 --~~~l~~l~~~l~~~G~~vv~~ 189 (252)
......+...|...|+..++.
T Consensus 159 ~~~~~~~~l~~~l~~~G~~~~~~ 181 (212)
T 3r6w_A 159 AMNHADPWLRTALGFIGIDEVTV 181 (212)
T ss_dssp GGCCSHHHHHHHHHHHTCCEEEE
T ss_pred chhhhHHHHHHHHHHCCCceeEE
Confidence 112455666777789988753
No 46
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=99.79 E-value=1.3e-18 Score=144.31 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=101.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|||||||++|+..++..+++++++++++ .|.++++++|.+..+. ..+++... .+++.+||+|||++|+
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~-~g~ev~~~dL~~~~~~----------~~~dv~~~-~~~l~~AD~iv~~~P~ 68 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQ-HTDRFTVHELYAVYPQ----------GKIDVAAE-QKLIETHDSLVWQFPI 68 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTT-CTTTEEEEEHHHHCTT----------CCCCHHHH-HHHHHTSSSEEEEEEC
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHh-CCCeEEEEEchhcCCC----------CchhHHHH-HHHHHhCCEEEEEcCh
Confidence 7899999999976655899999999988 7999999999865321 12344444 6899999999999999
Q ss_pred cCCCchHHHHHHHHhhhhh-hh----hccCCCCcEEEEEeeCCCC------C----ChHHHHHHHHHHHHHcCcEEecC
Q 040588 126 RFGSMASQMKAFFDSTFHL-WE----QQRLAGVPAGFFVSTGTQG------G----GQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~~-~~----~~~l~gK~~~if~s~G~~~------g----~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
||+++|+.||.||||+... |. ...|+||++.+++|.|+.. | ..+..+..+...+...||..++.
T Consensus 69 y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~ 147 (192)
T 3f2v_A 69 YWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPP 147 (192)
T ss_dssp BTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCC
T ss_pred hhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeee
Confidence 9999999999999997532 21 1368999999999988641 1 11233444667788889998864
No 47
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.78 E-value=8.7e-19 Score=139.78 Aligned_cols=130 Identities=24% Similarity=0.301 Sum_probs=84.5
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC-CCCHHHHhcc---cCCCCCC-CCccc--chhhhhccC
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE-TLPAEVLEQM---KVPQKGI-EVPVI--AVDDLVHAD 117 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~-~~p~~~~~~~---~~~~~~d-~~~~~--~~~~l~~aD 117 (252)
+|+||+|||+|++|||++||+.|++++.. +++..+.+.+ ..+..+..+. ......+ ..|.+ ...++.+||
T Consensus 2 M~~kilIvY~S~tGnT~~iA~~Ia~~l~~---~~~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d 78 (151)
T 3edo_A 2 MAKKTLILYYSWSGETKKMAEKINSEIKD---SELKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYD 78 (151)
T ss_dssp CCCCEEEEECCSSSHHHHHHHHHHHHSTT---CEEEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCS
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHhccC---CCEEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCC
Confidence 46799999999999999999999999853 2322222211 2221111100 0000000 12222 146789999
Q ss_pred eEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEec
Q 040588 118 GLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVP 188 (252)
Q Consensus 118 ~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~ 188 (252)
+||||+|+|++++|+.++.||+++. .+.+|++++|+++||. ...++..+.+.+. +..+++
T Consensus 79 ~iilG~P~~~g~~~~~~~~fl~~~~------~~~~k~~~~~t~gg~~---~g~~~~~l~~~~~--~~~~~~ 138 (151)
T 3edo_A 79 LILIGSPVWSGYPATPIKTLLDQMK------NYRGEVASFFTSAGTN---HKAYVSHFNEWAD--GLNVIG 138 (151)
T ss_dssp EEEEEEEEETTEECTHHHHHHHHTT------TCCSEEEEEEECSSCC---HHHHHHHHHHHTT--TSEEEE
T ss_pred EEEEEcceecccccHHHHHHHHhch------hcCCEEEEEEEeCCCC---CCcHHHHHHHHcC--CCeeec
Confidence 9999999999999999999999874 4677888888887763 2345666666653 555543
No 48
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.78 E-value=3.6e-18 Score=138.95 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=110.5
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRF 127 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~ 127 (252)
||+|+|+|++|||+++|+.|++++.+ . +++++++.+.. ...++.+||.||||+|||+
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~-~--~~~~~~~~~~~--------------------~~~~l~~~d~ii~g~pt~~ 57 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGA-K--ADAPIDVDDVT--------------------DPQALKDYDLLFLGAPTWN 57 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGG-G--BCCCEEGGGCS--------------------CGGGGGGCSEEEEEEECCS
T ss_pred CEEEEEECCCchHHHHHHHHHHHhcc-C--CcEEEehhhcC--------------------ChhHHccCCEEEEEEeecC
Confidence 68999999999999999999999976 2 56677765420 1456889999999999999
Q ss_pred -CCc----hHHHHHHH-HhhhhhhhhccCCCCcEEEEEeeCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCccCCCcccc
Q 040588 128 -GSM----ASQMKAFF-DSTFHLWEQQRLAGVPAGFFVSTGTQ-GG-GQETTAWTAITQLAHHGMVYVPIGYTFGTEMFG 199 (252)
Q Consensus 128 -g~~----~~~~k~fl-d~l~~~~~~~~l~gK~~~if~s~G~~-~g-~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~ 199 (252)
|.+ |..++.|+ +++.. ..++||++++|++++.. .+ ....++..+.+.|...|+.+++.....+ ..++
T Consensus 58 ~G~~~~~~p~~~~~fl~~~l~~----~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g-~~~~ 132 (173)
T 2fcr_A 58 TGADTERSGTSWDEFLYDKLPE----VDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDD-YDYE 132 (173)
T ss_dssp TTCSSCCSCSTHHHHHHHTGGG----CCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGG-SCCS
T ss_pred CCCcCccCcHHHHHHHHhhccc----cccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCC-cccc
Confidence 899 89999999 98753 36889999999997643 11 2234678899999999999987522110 0011
Q ss_pred -ccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 040588 200 -MDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAI 240 (252)
Q Consensus 200 -~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~ 240 (252)
+..+..+.+.|. .+.+ ...++.+.+++++|.+.+.+.
T Consensus 133 ~s~~~~~~~~~~l-~~~~---~~~~~~~~~~i~~w~~~i~~~ 170 (173)
T 2fcr_A 133 ESKSVRDGKFLGL-PLDM---VNDQIPMEKRVAGWVEAVVSE 170 (173)
T ss_dssp CCTTEETTEESSE-EEET---TTCSSCHHHHHHHHHHHHHHH
T ss_pred cchhhhCCeeeee-eecC---CCCccccHHHHHHHHHHHHHH
Confidence 011111222222 1211 113445677888888877654
No 49
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=99.77 E-value=2.5e-19 Score=150.64 Aligned_cols=142 Identities=11% Similarity=0.101 Sum_probs=101.1
Q ss_pred CCceEEEEEeCCc----hhHHHHHHHHHHhccccC--CceEEEEECCCC-CCH---HHHhcc-----cCCCC------CC
Q 040588 45 GQLKIFIIFYSMY----GHVEILARRMKKGVDSID--GVEGVLYRVPET-LPA---EVLEQM-----KVPQK------GI 103 (252)
Q Consensus 45 ~~~kIlIIy~S~~----GnT~~la~~i~~~l~~~~--G~ev~l~~l~~~-~p~---~~~~~~-----~~~~~------~d 103 (252)
+|||||+|++|+. ++|.+|++++++++++ . |.++++++|.+. .|. ..+... .+... .+
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~-~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKE-AHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVA 81 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHH-HCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHH
Confidence 4789999999965 7899999999999987 4 889999999875 231 111110 01100 12
Q ss_pred CCcccchhhhhccCeEEEeccccCCCchHHHHHHHHhhhhh-h--------hhccCCCCcEEEEEeeCCCCCCh-----H
Q 040588 104 EVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHL-W--------EQQRLAGVPAGFFVSTGTQGGGQ-----E 169 (252)
Q Consensus 104 ~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~-~--------~~~~l~gK~~~if~s~G~~~g~~-----~ 169 (252)
++..+ .+++.+||+|||++|+||+++|+.+|+|||++... + ..+.++||++.+++|+|+..++. .
T Consensus 82 ~~~~~-~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~ 160 (211)
T 3p0r_A 82 VADKY-LNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVE 160 (211)
T ss_dssp HHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGC
T ss_pred HHHHH-HHHHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchh
Confidence 33444 68899999999999999999999999999997532 1 02358999999999987754322 1
Q ss_pred HHHHHHHHHHHHcCcEEec
Q 040588 170 TTAWTAITQLAHHGMVYVP 188 (252)
Q Consensus 170 ~~l~~l~~~l~~~G~~vv~ 188 (252)
.....+...|...|+..+.
T Consensus 161 ~~~~~l~~~l~~~G~~~v~ 179 (211)
T 3p0r_A 161 MAVKYVASMMGFFGATNME 179 (211)
T ss_dssp BSHHHHHHHHHHTTCCSCE
T ss_pred HHHHHHHHHHHhCCCCeee
Confidence 1245566677777887654
No 50
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.76 E-value=1.3e-18 Score=144.30 Aligned_cols=148 Identities=15% Similarity=0.075 Sum_probs=111.5
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 43 TTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
...+|||+|+|+|++|||+++|+.|++++.+ .|++++++++.+. ..++.++|.||||
T Consensus 18 ~~~~~kv~IvY~S~tGnTe~~A~~ia~~l~~-~g~~v~v~~l~~~----------------------~~~l~~~d~vi~g 74 (191)
T 1bvy_F 18 NAHNTPLLVLYGSNMGTAEGTARDLADIAMS-KGFAPQVATLDSH----------------------AGNLPREGAVLIV 74 (191)
T ss_dssp ---CCCEEEEEECSSSHHHHHHHHHHHHHHT-TTCCCEEEEGGGS----------------------TTCCCSSSEEEEE
T ss_pred ccCCCeEEEEEECCChHHHHHHHHHHHHHHh-CCCceEEeeHHHh----------------------hhhhhhCCeEEEE
Confidence 3457899999999999999999999999987 7889999888752 2357789999999
Q ss_pred ccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCC-ChHHHHHHHHHHHHHcCcEEecCCccCCCcccccc
Q 040588 123 FPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGG-GQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMD 201 (252)
Q Consensus 123 sP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g-~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~ 201 (252)
+|||+|.+|..++.|++.+...- ...|+||++++|+++....+ ....+...+.+.|...|+.++.....
T Consensus 75 ~~Ty~G~~p~~~~~fl~~L~~~~-~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~--------- 144 (191)
T 1bvy_F 75 TASYNGHPPDNAKQFVDWLDQAS-ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGE--------- 144 (191)
T ss_dssp ECCBTTBCCTTTHHHHHHHHTCC-SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEE---------
T ss_pred EeecCCCcCHHHHHHHHHHHhcc-chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEE---------
Confidence 99999999999999999975321 12488999999997533222 12246778889999999877653211
Q ss_pred CCCCCCccccceecCCCCCCCCHHHHHH-HHHHHHHHHHHHH
Q 040588 202 SLRGGSPYGAGVFSGDGTRKPTETELAL-AEHQGKYMAAIVK 242 (252)
Q Consensus 202 ~~~~~~~~G~~~~~~~~~~~pde~~l~~-a~~~g~~la~~~~ 242 (252)
. +. +++++. +++|++.|.+.+.
T Consensus 145 ------------~----d~---~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 145 ------------A----DA---SDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp ------------E----ET---TSCHHHHHHHHHHHHHHHHH
T ss_pred ------------E----ec---CCChHHHHHHHHHHHHHHhc
Confidence 1 11 234555 8899999888775
No 51
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=99.76 E-value=1.5e-17 Score=139.15 Aligned_cols=126 Identities=15% Similarity=0.137 Sum_probs=98.7
Q ss_pred ceEEEEEeCCc------hhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEE
Q 040588 47 LKIFIIFYSMY------GHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLL 120 (252)
Q Consensus 47 ~kIlIIy~S~~------GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II 120 (252)
.|||||++|+. ++|++|++++++++++ .|.++++++|.+. +++..+ .++|.+||+||
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~-~g~~v~~~dL~~~---------------~d~~~~-~~~l~~AD~iV 75 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRD-LGHDVRIVRADSD---------------YDVKAE-VQNFLWADVVI 75 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHH-TTCEEEEEESSSC---------------CCHHHH-HHHHHHCSEEE
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHH-cCCEEEEEeCCcc---------------ccHHHH-HHHHHhCCEEE
Confidence 58999999987 8999999999999998 7999999999863 234444 78999999999
Q ss_pred EeccccCCCchHHHHHHHHhhhhh-hh-------------------hccCCCCcEEEEEeeCCCCC------------Ch
Q 040588 121 FGFPTRFGSMASQMKAFFDSTFHL-WE-------------------QQRLAGVPAGFFVSTGTQGG------------GQ 168 (252)
Q Consensus 121 ~gsP~y~g~~~~~~k~fld~l~~~-~~-------------------~~~l~gK~~~if~s~G~~~g------------~~ 168 (252)
|++|+||+++|+.||+||||+... |. ...++||++++++|+|+... ..
T Consensus 76 ~~~P~y~~s~pa~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~ 155 (204)
T 2amj_A 76 WQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGV 155 (204)
T ss_dssp EEEECBTTBCCHHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCH
T ss_pred EECCccccCCCHHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCH
Confidence 999999999999999999996432 22 13579999999999876421 11
Q ss_pred HHHHHHHHHHHHHcCcEEecC
Q 040588 169 ETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 169 ~~~l~~l~~~l~~~G~~vv~~ 189 (252)
...+..+...+...|+.+++.
T Consensus 156 ~~~l~~l~~~l~~~G~~~~~~ 176 (204)
T 2amj_A 156 DGVYLPFHKANQFLGMEPLPT 176 (204)
T ss_dssp HHHTHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHHHHHHHcCCeecce
Confidence 223334666778889988764
No 52
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.76 E-value=4.3e-18 Score=137.19 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=103.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
|||++|+|+|++|||+++|+.|++.+ |. ++++++.+. ...++.++|.||||+||
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l----g~-~~~~~~~~~---------------------~~~~l~~~d~ii~g~pt 54 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI----GN-AEVVDVAKA---------------------SKEQFNSFTKVILVAPT 54 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH----CS-EEEEEGGGC---------------------CHHHHTTCSEEEEEEEE
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc----CC-cEEEecccC---------------------CHhHHhhCCEEEEEECC
Confidence 68999999999999999999999998 34 788888653 24568899999999999
Q ss_pred cC-CCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCC-CCC-hHHHHHHHHHHHHHcCcEEecC----CccCCCccc
Q 040588 126 RF-GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQ-GGG-QETTAWTAITQLAHHGMVYVPI----GYTFGTEMF 198 (252)
Q Consensus 126 y~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~-~g~-~~~~l~~l~~~l~~~G~~vv~~----~~~~~~~~~ 198 (252)
|+ |.+|..++.|++.+.. ..+++|++++|+++... .++ ...+...+.+.|.. +.+++. +|.+.
T Consensus 55 ~~~g~~p~~~~~f~~~l~~----~~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~---- 124 (164)
T 2bmv_A 55 AGAGDLQTDWEDFLGTLEA----SDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFE---- 124 (164)
T ss_dssp ETTTEECHHHHHHHTTCCT----HHHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCS----
T ss_pred cCCCcCcHHHHHHHHHHhh----hhcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCcccc----
Confidence 96 6788889999998753 25788999999984331 221 22356777777765 666653 12100
Q ss_pred cccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 040588 199 GMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAA 239 (252)
Q Consensus 199 ~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~ 239 (252)
.+..+..+...+. .+ ...++++++.++++++++++.+
T Consensus 125 ~s~~~~~~~~~~l-~~---~~~~~~~~~~~~~~~w~~~l~~ 161 (164)
T 2bmv_A 125 ASKAVEGGKFVGL-VI---DEDNQDDLTDERISKWVEQVKG 161 (164)
T ss_dssp CCTTEETTEESSE-EE---CTTTCGGGHHHHHHHHHHHHTT
T ss_pred chhhhhcCcccCc-cC---CCCCccccCHHHHHHHHHHHHH
Confidence 0001111111111 11 1123446789999999988864
No 53
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=99.73 E-value=3.1e-17 Score=139.11 Aligned_cols=173 Identities=13% Similarity=0.068 Sum_probs=117.3
Q ss_pred CCceEEEEEeCCc-----hhHHHHHHHHHHhcccc-CCc-eEEEEECCCC-CCH---HHHhcccC-----CCC------C
Q 040588 45 GQLKIFIIFYSMY-----GHVEILARRMKKGVDSI-DGV-EGVLYRVPET-LPA---EVLEQMKV-----PQK------G 102 (252)
Q Consensus 45 ~~~kIlIIy~S~~-----GnT~~la~~i~~~l~~~-~G~-ev~l~~l~~~-~p~---~~~~~~~~-----~~~------~ 102 (252)
.|||||+|++|+. ++|.+|++++++++++. .|. ++++++|.+. .|. .|..+..+ ... .
T Consensus 3 ~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (223)
T 3u7i_A 3 AMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVT 82 (223)
T ss_dssp CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHH
Confidence 3799999999964 78999999999999762 257 9999999876 332 23222111 100 0
Q ss_pred CCCcccchhhhhccCeEEEeccccCCCchHHHHHHHHhhhhh---hh------hccC-CCCcEEEEEeeCCCCCCh----
Q 040588 103 IEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHL---WE------QQRL-AGVPAGFFVSTGTQGGGQ---- 168 (252)
Q Consensus 103 d~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~---~~------~~~l-~gK~~~if~s~G~~~g~~---- 168 (252)
+++..+ .+++.+||+|||++|+||+++|+.+|+|||++... |. .+.+ +||++.+++|.|+..++.
T Consensus 83 d~~~~l-~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~ 161 (223)
T 3u7i_A 83 ERMSEI-LQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYT 161 (223)
T ss_dssp HHHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHH
T ss_pred HHHHHH-HHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccc
Confidence 123334 68899999999999999999999999999997542 11 1346 899999999987754321
Q ss_pred --HHHHHHHHHHHHHcCcEEecCCccCCCccccccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040588 169 --ETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIV 241 (252)
Q Consensus 169 --~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~ 241 (252)
......+...|...|+..+..-+. .+. ...+.++.+++|++-++++++..
T Consensus 162 ~~~~~~~~l~~~l~~~G~~~~~~i~~----------------------~g~-~~~~~~~~~~~a~~~~~~~~~~f 213 (223)
T 3u7i_A 162 DVEYSHKYLKAMFNFLGIEDYQIVRA----------------------QGT-AVLDPTEVLQNAYKEVEEAASRL 213 (223)
T ss_dssp HTCHHHHHHHHHHHHHTCCEEEEEEE----------------------CCT-TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCceeEEEEE----------------------cCc-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 123455677777789987753211 010 11245677777777777666554
No 54
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=99.73 E-value=4.3e-17 Score=137.58 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=99.0
Q ss_pred CceEEEEEeCCc------hhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeE
Q 040588 46 QLKIFIIFYSMY------GHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGL 119 (252)
Q Consensus 46 ~~kIlIIy~S~~------GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~I 119 (252)
|||||||++|+. ++|+.|++++++.+++ .|.+++++++.+. +|+... .+.+.+||+|
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~-~g~ev~~~dL~~~---------------~Dv~~~-~~~l~~aD~i 87 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRE-SGHQVKITTVDQG---------------YDIESE-IENYLWADTI 87 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHH-TTCCEEEEEGGGC---------------CCHHHH-HHHHHHCSEE
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhh-CCCEEEEEECCCc---------------cCHHHH-HHHHHhCCEE
Confidence 689999999973 6799999999999988 8999999999752 233333 6889999999
Q ss_pred EEeccccCCCchHHHHHHHHhhhhh-hh-------------------hccCCCCcEEEEEeeCCCC-----C-----C--
Q 040588 120 LFGFPTRFGSMASQMKAFFDSTFHL-WE-------------------QQRLAGVPAGFFVSTGTQG-----G-----G-- 167 (252)
Q Consensus 120 I~gsP~y~g~~~~~~k~fld~l~~~-~~-------------------~~~l~gK~~~if~s~G~~~-----g-----~-- 167 (252)
||++|+||+++|+.+|.|||++... |. .+.|+||++.+++|.|.+. + +
T Consensus 88 v~~~P~y~~~~p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~ 167 (218)
T 3rpe_A 88 IYQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVG 167 (218)
T ss_dssp EEEEECBTTBCCHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCH
T ss_pred EEECChHhccCCHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCC
Confidence 9999999999999999999997532 21 1357999999999988752 1 1
Q ss_pred hHHHHHHHHHHHHHcCcEEecC
Q 040588 168 QETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 168 ~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
.+..+..+...+...||..++.
T Consensus 168 ~~~~l~p~~~~l~f~G~~~l~~ 189 (218)
T 3rpe_A 168 VDGVYLPFHKANQFLGMKPLPT 189 (218)
T ss_dssp HHHHTHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHHHHHHHhCCCEEece
Confidence 1112333566777789988864
No 55
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=99.73 E-value=9.6e-18 Score=142.70 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=88.6
Q ss_pred ceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhccc-----------------------CCCC
Q 040588 47 LKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMK-----------------------VPQK 101 (252)
Q Consensus 47 ~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~-----------------------~~~~ 101 (252)
||||||++|+ .++|..|++++++++++ .|.+|++++|.+.....|+.+.. |..
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~-~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~- 79 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSR-QGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSL- 79 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHH-HTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCB-
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCC-
Confidence 7999999997 57899999999999988 79999999998863222332110 111
Q ss_pred CCCCcccchhhhhccCeEEEeccccCCCchHHHHHHHHhhhhh---------hhhccCCCCcEEEEEeeCCC
Q 040588 102 GIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHL---------WEQQRLAGVPAGFFVSTGTQ 164 (252)
Q Consensus 102 ~d~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~---------~~~~~l~gK~~~if~s~G~~ 164 (252)
.+++... .+.+.+||+|||++|+||+++|+.||+|||++... +..+.|+||++.+++|.|+.
T Consensus 80 ~dd~~~~-~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~ 150 (228)
T 3tem_A 80 ASDITDE-QKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 150 (228)
T ss_dssp CHHHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSC
T ss_pred cHHHHHH-HHHHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCC
Confidence 2333333 67899999999999999999999999999997532 11246899999999988764
No 56
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=99.70 E-value=3.9e-17 Score=142.74 Aligned_cols=124 Identities=17% Similarity=0.213 Sum_probs=89.5
Q ss_pred CCCCCCCCceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCC----------------
Q 040588 39 TTTSTTGQLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQ---------------- 100 (252)
Q Consensus 39 ~~~~~~~~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~---------------- 100 (252)
|...-+..|||||||+|+ .++|..|++.+++++++ .|.+|++++|.+..+..|+.+..|..
T Consensus 15 t~~~~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~-~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (280)
T 4gi5_A 15 TENLYFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQ-AGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQA 93 (280)
T ss_dssp -------CCEEEEEECCSCTTSHHHHHHHHHHHHHHH-TTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHH
T ss_pred CCcchhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHH-CCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHH
Confidence 334556779999999997 47899999999999998 89999999998764433443322211
Q ss_pred -----CCCCCcccchhhhhccCeEEEeccccCCCchHHHHHHHHhhhhh-h----------------hhccCCCCcEEEE
Q 040588 101 -----KGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHL-W----------------EQQRLAGVPAGFF 158 (252)
Q Consensus 101 -----~~d~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~-~----------------~~~~l~gK~~~if 158 (252)
..+|+... .+.+.+||.|||++|+||+++|+.||.||||+... | ..+.|+||++.++
T Consensus 94 ~~~~~~~~dv~~~-~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~ 172 (280)
T 4gi5_A 94 FAQGTQSADIVAE-QEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLI 172 (280)
T ss_dssp HHHTCSCHHHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEE
T ss_pred hhcCCCcHHHHHH-HHHHHhCCEEEEEeccccccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEE
Confidence 11223222 56789999999999999999999999999997421 1 1235789999999
Q ss_pred EeeCCC
Q 040588 159 VSTGTQ 164 (252)
Q Consensus 159 ~s~G~~ 164 (252)
+|.|+.
T Consensus 173 ~T~g~~ 178 (280)
T 4gi5_A 173 VTAGGW 178 (280)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 988763
No 57
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=99.63 E-value=3.6e-15 Score=122.07 Aligned_cols=122 Identities=20% Similarity=0.284 Sum_probs=92.5
Q ss_pred ceEEEEEeCCc---hhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 47 LKIFIIFYSMY---GHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 47 ~kIlIIy~S~~---GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
||||||++|+. +.+.++++.+++.+. ++++++|.+. +|+... .+++.+||.|||++
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~~~-----~v~v~dL~~~---------------~D~~~~-~~~l~~aD~iV~~~ 59 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIENFS-----NVTWHPLVAD---------------FNVEQE-QSLLLQNDRIILEF 59 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTTCT-----TEEEEECCTT---------------CCHHHH-HHHHHTCSEEEEEE
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhcCC-----CEEEEECCCc---------------ccHHHH-HHHHHhCCEEEEEC
Confidence 68999999985 667778877777653 5889999862 244443 78999999999999
Q ss_pred cccCCCchHHHHHHHHhhhhh-hh---hccCCCCcEEEEEeeCCCC-----C-----ChHHHHHHHHHHHHHcCcEEecC
Q 040588 124 PTRFGSMASQMKAFFDSTFHL-WE---QQRLAGVPAGFFVSTGTQG-----G-----GQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~-~~---~~~l~gK~~~if~s~G~~~-----g-----~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
|+||+++|+.||.||||+... |. .+.|+||++.+++|+|+.. + ..+..+..+...+...||..++.
T Consensus 60 P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~ 139 (177)
T 3ha2_A 60 PLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPI 139 (177)
T ss_dssp ECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCC
T ss_pred ChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCe
Confidence 999999999999999997532 21 2468999999999988642 1 12334445566777889998864
No 58
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=99.60 E-value=1.6e-15 Score=139.50 Aligned_cols=162 Identities=18% Similarity=0.187 Sum_probs=110.5
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
+||||||++|+..++..+.+.+++.+.+ ..++++++|.+..| ...+|+... .+.|.+||.|||++|+
T Consensus 236 ~mkiLvi~gspr~~ss~~n~~l~~~~~~--~~~v~v~dL~~~~p----------~~~~d~~~~-~~~l~~aD~iv~~~P~ 302 (413)
T 3l9w_A 236 SGMILIIYAHPYPHHSHANKRMLEQART--LEGVEIRSLYQLYP----------DFNIDIAAE-QEALSRADLIVWQHPM 302 (413)
T ss_dssp -CCEEEEECCSCGGGCSHHHHHHHHHHT--SSSEEEEEHHHHCT----------TSCCCHHHH-HHHHHTCSEEEEEEEC
T ss_pred CCCEEEEEECCCcchHHHHHHHHHHHhc--CCCEEEEEchhhCC----------CCcHHHHHH-HHHHHhCCEEEEECch
Confidence 4899999999876554466667666654 35788888854322 112445444 7889999999999999
Q ss_pred cCCCchHHHHHHHHhhhhh-hh----hccCCCCcEEEEEeeCCCCCC--------hHHHHHHHHHHHHHcCcEEecCCcc
Q 040588 126 RFGSMASQMKAFFDSTFHL-WE----QQRLAGVPAGFFVSTGTQGGG--------QETTAWTAITQLAHHGMVYVPIGYT 192 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~~-~~----~~~l~gK~~~if~s~G~~~g~--------~~~~l~~l~~~l~~~G~~vv~~~~~ 192 (252)
||+++|+.||.|||++... |. ...|+||++.+++|.|+..+. ....+..+...+...||.+++..+.
T Consensus 303 yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~ 382 (413)
T 3l9w_A 303 QWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAM 382 (413)
T ss_dssp BTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEE
T ss_pred hhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEE
Confidence 9999999999999998532 11 125899999999887763211 1123456677778889998864221
Q ss_pred CCCccccccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040588 193 FGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKK 243 (252)
Q Consensus 193 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~ 243 (252)
+|. ....+++..+.++++.++|..++.+
T Consensus 383 ----------------~g~-------~~~~d~~~~~~~~~~~~~L~~~~~~ 410 (413)
T 3l9w_A 383 ----------------HCT-------FICDDETLEGQARHYKQRLLEWQEA 410 (413)
T ss_dssp ----------------CCS-------TTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------cCC-------CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 111 1123455567778888888887754
No 59
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.56 E-value=2.6e-14 Score=138.98 Aligned_cols=151 Identities=13% Similarity=-0.005 Sum_probs=117.4
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhcc-ccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhcc-CeEEEe
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVD-SIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHA-DGLLFG 122 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~-~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~a-D~II~g 122 (252)
.|+||+|+|+|.+|||+.+|+.|++.+. + .|.+++++++.+. ...++.++ |.|||+
T Consensus 48 ~~~ki~IlY~S~tGnte~~A~~ia~~l~~~-~g~~v~v~~l~~~---------------------~~~~l~~~~~~vi~~ 105 (682)
T 2bpo_A 48 NNKNYLVLYASQTGTAEGFAKAFSKELVAK-FNLNVMCADVENY---------------------DFESLNDVPVIVSIF 105 (682)
T ss_dssp TTCSEEEEEECSSSHHHHHHHHHHHHHHHH-HCCCEEEEETTSS---------------------CGGGGGGCCSEEEEE
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHhHHh-cCCceEEeehHHC---------------------CHHHHhhcCCeEEEE
Confidence 4789999999999999999999999998 6 7889999999875 24567789 999999
Q ss_pred cccc-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCcccccc
Q 040588 123 FPTR-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMD 201 (252)
Q Consensus 123 sP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~ 201 (252)
+||| .|.+|..++.|++.+.... ...|+||.+++|+.+.......-.+...+.+.|...|+..+.....
T Consensus 106 ~sT~G~G~~p~~~~~F~~~l~~~~-~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~--------- 175 (682)
T 2bpo_A 106 ISTYGEGDFPDGAVNFEDFICNAE-AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGE--------- 175 (682)
T ss_dssp EECBTTTBCCSSCHHHHHHHHTCC-TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEE---------
T ss_pred eCccCCCCCCHHHHHHHHHHHhcc-chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEE---------
Confidence 9999 8999999999999886432 1248999999999654333333456788899999999988764211
Q ss_pred CCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 040588 202 SLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKF 244 (252)
Q Consensus 202 ~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l 244 (252)
. +..+ ++..+.++.|++.|...+.+.
T Consensus 176 ------------~----D~~~-~~~~~~~~~W~~~l~~~l~~~ 201 (682)
T 2bpo_A 176 ------------A----DDGA-GTTDEDYMAWKDSILEVLKDE 201 (682)
T ss_dssp ------------E----ETTT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------E----ecCC-cccHHHHHHHHHHHHHHHHhh
Confidence 1 1123 445677889999988777553
No 60
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=99.55 E-value=5.5e-14 Score=118.49 Aligned_cols=119 Identities=16% Similarity=0.067 Sum_probs=96.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
.++|+|+|+|.+|||+.+|+.|++.+. .|.+++++++.+. ...++.+++.|||++||
T Consensus 40 ~~kv~IlYgS~tGnte~~A~~La~~l~--~g~~v~v~~l~~~---------------------~~~~l~~~~~vI~~tsT 96 (219)
T 3hr4_A 40 RVRVTILFATETGKSEALAWDLGALFS--CAFNPKVVCMDKY---------------------RLSCLEEERLLLVVTST 96 (219)
T ss_dssp SCEEEEEEECSSSHHHHHHHHHHHHHT--TTSEEEEEEGGGC---------------------CGGGGGTCSEEEEEEEC
T ss_pred CCcEEEEEECCchHHHHHHHHHHHHHH--cCCCeEEEEcccC---------------------CHhHhccCCeEEEEEec
Confidence 468999999999999999999999984 5889999998764 24567889999999999
Q ss_pred c-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 040588 126 R-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 126 y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
| .|.+|..++.|++.+... ...++|+.+++|+.+.+.....-.+...+.+.|...|...+..
T Consensus 97 yG~Ge~Pdna~~F~~~L~~~--~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~ 159 (219)
T 3hr4_A 97 FGNGDCPGNGEKLKKSLFML--KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTP 159 (219)
T ss_dssp BTTTBCCGGGHHHHHHHHHC--CCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSC
T ss_pred cCCCcCCHHHHHHHHHHHhc--chhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeC
Confidence 9 788999899999987632 1246899999999865433333346778888899999988754
No 61
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.41 E-value=4.9e-13 Score=102.02 Aligned_cols=115 Identities=14% Similarity=0.168 Sum_probs=77.9
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccC-
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRF- 127 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~- 127 (252)
++|+|+|++|||+++|+.|+ + .+ + ++.+ +.+ .+|.||||+|||+
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~---~~--~---~i~~------------------------~~~-~~~~ii~g~pt~~~ 45 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--M---PA--V---QIGE------------------------DLV-IDEDFILITYTTGF 45 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--S---CE--E---ECCT------------------------TCC-CCSCEEEEECCBTT
T ss_pred CEEEEECCChhHHHHHHHhc--c---cC--C---CcCc------------------------ccc-cCCCEEEEEeecCC
Confidence 47999999999999999998 3 22 2 2311 112 4999999999995
Q ss_pred CCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCC-hHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCCCC
Q 040588 128 GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGG-QETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGG 206 (252)
Q Consensus 128 g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~-~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~ 206 (252)
|.+|..++.|++. +++|.+++|++++...+. ...+...+.+.+. ... .+
T Consensus 46 g~~p~~~~~fl~~---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~~~---~~--------------- 95 (119)
T 2xod_A 46 GNVPERVLEFLER---------NNEKLKGVSASGNRNWGDMFGASADKISAKYE---VPI---VS--------------- 95 (119)
T ss_dssp TBCCHHHHHHHHH---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---CCE---EE---------------
T ss_pred CcCCHHHHHHHHH---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---Ccc---EE---------------
Confidence 9999999999975 356889999885431121 1223444544432 110 01
Q ss_pred CccccceecCCCCCCCCHHHHHHHHHHHHHHH
Q 040588 207 SPYGAGVFSGDGTRKPTETELALAEHQGKYMA 238 (252)
Q Consensus 207 ~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la 238 (252)
.+ +..|++++++++++++++++
T Consensus 96 ------~~----~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 96 ------KF----ELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp ------EE----ETTCCHHHHHHHHHHHHHHT
T ss_pred ------EE----ecCCCHHHHHHHHHHHHHhc
Confidence 01 23688999999999998875
No 62
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.33 E-value=7.3e-12 Score=120.56 Aligned_cols=122 Identities=18% Similarity=0.153 Sum_probs=94.2
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhh--ccCeEEEecc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLV--HADGLLFGFP 124 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~--~aD~II~gsP 124 (252)
++|+|+|+|.+|||+.+|+.|++.+.+ .|++++++++.+... .+ ...+. +++.|||++|
T Consensus 19 ~~i~I~YgS~tGnte~~A~~la~~l~~-~g~~~~v~~~~~~~~----------------~~--l~~~~~~~~~~vi~~~s 79 (618)
T 3qe2_A 19 RNIIVFYGSQTGTAEEFANRLSKDAHR-YGMRGMSADPEEYDL----------------AD--LSSLPEIDNALVVFCMA 79 (618)
T ss_dssp CSEEEEEECSSSHHHHHHHHHHHHGGG-GTCCEEEECGGGSCG----------------GG--GGGGGGSTTCEEEEEEE
T ss_pred CeEEEEEECChhHHHHHHHHHHHHHHh-CCCceEEechHHcCH----------------HH--hhhcccccCcEEEEEcC
Confidence 579999999999999999999999988 899999988876421 11 11222 5899999999
Q ss_pred cc-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 040588 125 TR-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 125 ~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
|| .|.+|..++.|++.+... ...|+|+.+++|+.+....+..-.+...+.+.|...|...+..
T Consensus 80 T~G~G~~pd~~~~F~~~L~~~--~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~ 143 (618)
T 3qe2_A 80 TYGEGDPTDNAQDFYDWLQET--DVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFE 143 (618)
T ss_dssp CBGGGBCCGGGHHHHHHHHHC--CCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSC
T ss_pred ccCCCCCCHHHHHHHHHHhhc--cccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeec
Confidence 99 899999999999987631 1368999999999644332233345677888888999988743
No 63
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.26 E-value=8.9e-11 Score=114.24 Aligned_cols=148 Identities=14% Similarity=-0.004 Sum_probs=110.3
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
.+|++|+|+|.+|||+.+|+.|++.+. .|.+++++++.++ ...++..++.|||++||
T Consensus 11 ~~k~~IlY~S~TG~te~~A~~l~~~l~--~~~~~~v~~m~~~---------------------d~~~l~~~~~vl~vtsT 67 (688)
T 1tll_A 11 RVKATILYATETGKSQAYAKTLCEIFK--HAFDAKAMSMEEY---------------------DIVHLEHEALVLVVTST 67 (688)
T ss_dssp SCEEEEEEECSSSHHHHHHHHHHHHHT--TTSEEEEEETTTS---------------------CTTSGGGCSEEEEEECC
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHh--cCCCcEEeecccC---------------------ChhHhccCceEEEEEcc
Confidence 468999999999999999999999996 5789999999875 24566789999999999
Q ss_pred c-CCCchHHHHHHHHhhhhhhh----------------------------------------hccCCCCcEEEEEeeCCC
Q 040588 126 R-FGSMASQMKAFFDSTFHLWE----------------------------------------QQRLAGVPAGFFVSTGTQ 164 (252)
Q Consensus 126 y-~g~~~~~~k~fld~l~~~~~----------------------------------------~~~l~gK~~~if~s~G~~ 164 (252)
| +|.+|..+..|++.+..... ...|.|+.+++|+.+...
T Consensus 68 ~G~Gdpp~n~~~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~ 147 (688)
T 1tll_A 68 FGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRA 147 (688)
T ss_dssp BTTTBCCGGGHHHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTT
T ss_pred cCCCcCCHHHHHHHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCc
Confidence 9 89999999999998764310 124789999999965332
Q ss_pred CCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040588 165 GGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKK 243 (252)
Q Consensus 165 ~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~ 243 (252)
....-.....+.+.|...|...+..... . |. .. .+.+.++.|.+.+.+.+.+
T Consensus 148 Y~~F~~~~k~ld~~L~~lGa~rl~~~~~---------------------~--D~--~~--g~e~~f~~W~~~~~~~l~~ 199 (688)
T 1tll_A 148 YPHFCAFGHAVDTLLEELGGERILKMRE---------------------G--DE--LC--GQEEAFRTWAKKVFKAACD 199 (688)
T ss_dssp SSSTTHHHHHHHHHHHHTTCEESSCCEE---------------------E--ET--TT--THHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCceeeccee---------------------e--cc--CC--CcHHHHHHHHHHHHHHHHH
Confidence 2222345678888899999888753211 1 11 11 2456688888888877654
No 64
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=98.97 E-value=1.2e-09 Score=85.74 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=76.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
.|+++|+|+|.+|||+.+|+.|++. . .+++.+ .+...|.+||++||
T Consensus 8 ~m~i~I~Y~S~TGNt~~vA~~l~~~-------~--~~~i~~-------------------------~~~~~~~~ilv~pT 53 (139)
T 1rlj_A 8 NAMVQIIFDSKTGNVQRFVNKTGFQ-------Q--IRKVDE-------------------------MDHVDTPFVLVTYT 53 (139)
T ss_dssp HSCCEEEECCSSSHHHHHHTTSCCS-------E--EEETTS-------------------------CSCCCSCEEEEECC
T ss_pred CCEEEEEEECCChhHHHHHHHhccc-------c--ceEecc-------------------------ccccCCCEEEEEcC
Confidence 3678999999999999999877421 1 223321 13456889999999
Q ss_pred c-CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCCh-HHHHHHHHHHHHHcCcEEecCCccCCCccccccCC
Q 040588 126 R-FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQ-ETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSL 203 (252)
Q Consensus 126 y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~-~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~ 203 (252)
| .|.+|..+..||+.. .++..++++++....|.. -.+...+ ....++.+...
T Consensus 54 yG~G~~P~~v~~Fl~~~---------~~~~~~V~g~Gd~~yg~~f~~a~~~i---~~~~~~~~~~~-------------- 107 (139)
T 1rlj_A 54 TNFGQVPASTQSFLEKY---------AHLLLGVAASGNKVWGDNFAKSADTI---SRQYQVPILHK-------------- 107 (139)
T ss_dssp BGGGBCCHHHHHHHHHH---------GGGEEEEEEEECGGGGGGTTHHHHHH---HHHHTCCEEEE--------------
T ss_pred cCCCcCcHHHHHHHHhC---------CCCEEEEEecCCCcHHHHHHHHHHHH---HHHcCCCCcce--------------
Confidence 9 799999999999642 235677777644311221 1122222 23345544321
Q ss_pred CCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 040588 204 RGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAI 240 (252)
Q Consensus 204 ~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~ 240 (252)
+ ...++++|.++++++.+++...
T Consensus 108 ----------~----el~g~~~D~~~~~~~~~~~~~~ 130 (139)
T 1rlj_A 108 ----------F----ELSGTSKDVELFTQEVERVVTK 130 (139)
T ss_dssp ----------E----ETTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------E----EEcCCHHHHHHHHHHHHHHHHH
Confidence 1 1246788999999998887643
No 65
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=98.64 E-value=4.8e-08 Score=77.26 Aligned_cols=88 Identities=13% Similarity=0.201 Sum_probs=56.7
Q ss_pred hhccCeEEEeccccC-----CCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCC-CCh-HHHHHHHHHHHHHcCcE
Q 040588 113 LVHADGLLFGFPTRF-----GSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQG-GGQ-ETTAWTAITQLAHHGMV 185 (252)
Q Consensus 113 l~~aD~II~gsP~y~-----g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~-g~~-~~~l~~l~~~l~~~G~~ 185 (252)
+...+-+|+++|||. |.+|.++..||+... ..++..++++++ .+. |.. -.+...+.+.+ +..
T Consensus 56 ~~~~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~-------n~~~~~gVigsG-N~nfg~~Fc~A~d~ia~k~---~vP 124 (153)
T 3n3a_C 56 IQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEH-------NRALLRGVIASG-NRNFGEAYGRAGDVIARKC---GVP 124 (153)
T ss_dssp CCCCSCEEEEEECCTTSSSSSSSCHHHHHHHTSHH-------HHHHEEEEEEEE-CGGGGGGTTHHHHHHHHHH---TCC
T ss_pred cccCCCEEEEEeccCCCCcCCcCcHHHHHHHhhhc-------ccCcEEEEEecC-CCchhHHHHHHHHHHHHHh---CCC
Confidence 456789999999997 999999999997542 134567777764 432 211 12344444443 322
Q ss_pred EecCCccCCCccccccCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 040588 186 YVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAA 239 (252)
Q Consensus 186 vv~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~ 239 (252)
++ +. + +..++++|.++++++.+++.+
T Consensus 125 ~l---~k---------------------f----EL~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 125 WL---YR---------------------F----ELMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp EE---EE---------------------E----ETTCCHHHHHHHHHHHHHHHH
T ss_pred eE---EE---------------------E----eCCCCHHHHHHHHHHHHHHHh
Confidence 11 11 1 246889999999999887754
No 66
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=96.70 E-value=0.003 Score=46.99 Aligned_cols=85 Identities=11% Similarity=0.050 Sum_probs=57.6
Q ss_pred CCCCceEEEEEeCCch--hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEE
Q 040588 43 TTGQLKIFIIFYSMYG--HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLL 120 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~G--nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II 120 (252)
|.+||||+.|-..++| +|...++++.+..++ .|.++.+-.-...- --+.++.+++.+||.||
T Consensus 2 ~~m~mkIvaVTaCptGiAHTyMAAeaL~~aA~~-~G~~ikVEtqGs~G---------------~~n~Lt~~~I~~Ad~VI 65 (111)
T 2kyr_A 2 GHMSKKLIALCACPMGLAHTFMAAQALEEAAVE-AGYEVKIETQGADG---------------IQNRLTAQDIAEATIII 65 (111)
T ss_dssp --CCCEEEEEEEESSCHHHHHHHHHHHHHHHHH-TSSEEEEEEEETTE---------------EESCCCHHHHHHCSEEE
T ss_pred CcccccEEEEEcCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCC---------------cCCCCCHHHHHhCCEEE
Confidence 4567899999999988 688888888888888 89877653222110 00123578999999999
Q ss_pred EeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 121 FGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 121 ~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
|++-+---. . .+|.||++.-..+
T Consensus 66 iA~d~~v~~-----------~------~RF~GK~v~~~~v 88 (111)
T 2kyr_A 66 HSVAVTPED-----------N------ERFESRDVYEITL 88 (111)
T ss_dssp EEESSCCTT-----------G------GGGTTSCEEEEET
T ss_pred EEeCCCcCc-----------h------hhcCCCeEEEeCH
Confidence 998764111 1 2678999865554
No 67
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=96.30 E-value=0.0076 Score=44.40 Aligned_cols=58 Identities=19% Similarity=0.258 Sum_probs=42.1
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.|+||++++++.-+++ .+++.+.+.+++ .|+++++....-. ++ .+.+.+||.|+++..
T Consensus 2 ~mkkIll~Cg~G~sTS-~l~~k~~~~~~~-~gi~~~i~a~~~~-------------------~~-~~~~~~~Dvil~~pq 59 (106)
T 1e2b_A 2 EKKHIYLFSSAGMSTS-LLVSKMRAQAEK-YEVPVIIEAFPET-------------------LA-GEKGQNADVVLLGPQ 59 (106)
T ss_dssp CCEEEEEECSSSTTTH-HHHHHHHHHHHH-SCCSEEEEEECSS-------------------ST-THHHHHCSEEEECTT
T ss_pred CCcEEEEECCCchhHH-HHHHHHHHHHHH-CCCCeEEEEecHH-------------------HH-HhhccCCCEEEEccc
Confidence 4678999999976666 899999999998 8888776554321 12 345688997776643
No 68
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=96.26 E-value=0.0097 Score=44.27 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=44.8
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEE--ECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLY--RVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~--~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
.|+||+++++|.-|.+..++..+.+.+.+ .|+++++. .+.+. ...+.++|.||.+
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~-~gi~~~V~~~~~~~~----------------------~~~~~~~DlIist 76 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVNEI----------------------ETYMDGVHLICTT 76 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHH-TTCCEEEEEECTTTT----------------------TTSTTSCSEEEES
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEecHHHH----------------------hhccCCCCEEEEC
Confidence 46899999999999999999999999988 78765443 33321 2335679988888
Q ss_pred cccc
Q 040588 123 FPTR 126 (252)
Q Consensus 123 sP~y 126 (252)
.|+-
T Consensus 77 ~~l~ 80 (113)
T 1tvm_A 77 ARVD 80 (113)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 8775
No 69
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=96.23 E-value=0.0085 Score=44.19 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=46.3
Q ss_pred CceEEEEEeCCch--hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 46 QLKIFIIFYSMYG--HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~G--nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
||||++|-.-++| +|...|+++.+.+++ .|.++++-.-...- --+.++.+++.+||.||+++
T Consensus 2 ~mkivaVtaCptGiAhTymAAeaLekaA~~-~G~~ikVEtqgs~g---------------~~n~Lt~~~I~~AD~VIia~ 65 (106)
T 2m1z_A 2 KRKIIAVTACATGVAHTYMAAQALKKGAKK-MGNLIKVETQGATG---------------IENELTEKDVNIGEVVIFAV 65 (106)
T ss_dssp CCEEEEEEECSSCHHHHHHHHHHHHHHHHH-HTCEEEEEEEETTE---------------ESSCCCHHHHHHCSEEEEEE
T ss_pred CccEEEEEECCCcHHHHHHHHHHHHHHHHH-CCCEEEEEEecCcc---------------ccCCCCHHHHhhCCEEEEec
Confidence 5899999877877 677778899888887 78877653322110 00123468899999999998
Q ss_pred ccc
Q 040588 124 PTR 126 (252)
Q Consensus 124 P~y 126 (252)
.+-
T Consensus 66 d~~ 68 (106)
T 2m1z_A 66 DTK 68 (106)
T ss_dssp SSC
T ss_pred ccc
Confidence 864
No 70
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=95.91 E-value=0.016 Score=42.86 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=53.1
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
..+|||++++.+. .+|..+++.+.+.+++ .|+++++...... ++ .+.+.++|.|++|-
T Consensus 4 ~~~mkIlL~C~aG-mSTsllv~km~~~a~~-~gi~v~i~a~~~~-------------------~~-~~~~~~~DvvLLgP 61 (108)
T 3nbm_A 4 SKELKVLVLCAGS-GTSAQLANAINEGANL-TEVRVIANSGAYG-------------------AH-YDIMGVYDLIILAP 61 (108)
T ss_dssp -CCEEEEEEESSS-SHHHHHHHHHHHHHHH-HTCSEEEEEEETT-------------------SC-TTTGGGCSEEEECG
T ss_pred ccCceEEEECCCC-CCHHHHHHHHHHHHHH-CCCceEEEEcchH-------------------HH-HhhccCCCEEEECh
Confidence 3467999988664 6788899999999988 7888888553221 11 34567899988864
Q ss_pred cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 124 PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
-+- +. -..++...+ -.|+++.++-.
T Consensus 62 QV~-y~-~~~ik~~~~----------~~~ipV~vI~~ 86 (108)
T 3nbm_A 62 QVR-SY-YREMKVDAE----------RLGIQIVATRG 86 (108)
T ss_dssp GGG-GG-HHHHHHHHT----------TTTCEEEECCH
T ss_pred HHH-HH-HHHHHHHhh----------hcCCcEEEeCH
Confidence 442 21 123333322 24788877743
No 71
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=95.21 E-value=0.019 Score=42.33 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=41.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
.|||+++++|.-|++ .+++.+.+.+.+ .|+++++....-. ++ ...+.++|.||.+.++
T Consensus 4 ~mkIlvvC~~G~~TS-ll~~kl~~~~~~-~gi~~~i~~~~~~-------------------~~-~~~~~~~D~Ii~t~~l 61 (109)
T 2l2q_A 4 SMNILLVCGAGMSTS-MLVQRIEKYAKS-KNINATIEAIAET-------------------RL-SEVVDRFDVVLLAPQS 61 (109)
T ss_dssp CEEEEEESSSSCSSC-HHHHHHHHHHHH-HTCSEEEEEECST-------------------TH-HHHTTTCSEEEECSCC
T ss_pred ceEEEEECCChHhHH-HHHHHHHHHHHH-CCCCeEEEEecHH-------------------HH-HhhcCCCCEEEECCcc
Confidence 368999999988888 999999999988 7776554333211 11 3346789988777765
No 72
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=94.84 E-value=0.021 Score=42.18 Aligned_cols=59 Identities=8% Similarity=-0.037 Sum_probs=41.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCce-EEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVE-GVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~e-v~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
|+||+++++|.-|.+..++..+.+.+.+ .|++ +++....- .++ ...+.++|.||.+.+
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~-~gi~~~~i~~~~~-------------------~~~-~~~~~~~DlIi~t~~ 76 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQ-LGVSDIESASCSV-------------------GEA-KGLASNYDIVVASNH 76 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHH-TTCCCEEEEEECH-------------------HHH-HHHGGGCSEEEEETT
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHH-cCCCeEEEEEeeH-------------------HHH-hhccCCCcEEEECCc
Confidence 5789999999889888888899999987 7766 54333221 111 233578998888776
Q ss_pred c
Q 040588 125 T 125 (252)
Q Consensus 125 ~ 125 (252)
+
T Consensus 77 l 77 (110)
T 3czc_A 77 L 77 (110)
T ss_dssp T
T ss_pred h
Confidence 5
No 73
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=94.83 E-value=0.046 Score=40.20 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=54.8
Q ss_pred CceEEEEEeCCch--hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 46 QLKIFIIFYSMYG--HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~G--nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
.|||+.|-..++| +|...++++.+..++ .|.++.+-.=...- --+.++.+++.+||.|||++
T Consensus 2 ~~kivaVTaCptGiAhTymAaeaL~~aA~~-~G~~ikVEtqGs~G---------------~~n~Lt~~~I~~Ad~VIiA~ 65 (106)
T 2r48_A 2 NAKLLAITSCPNGIAHTYMAAENLQKAADR-LGVSIKVETQGGIG---------------VENKLTEEEIREADAIIIAA 65 (106)
T ss_dssp CCEEEEEEECSSCSHHHHHHHHHHHHHHHH-HTCEEEEEEEETTE---------------EESCCCHHHHHHCSEEEEEE
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCC---------------ccCCCCHHHHHhCCEEEEEe
Confidence 4699999999988 688888888888887 78876542211100 00123467899999999998
Q ss_pred cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 124 PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
-+-- + . .+|.||++.-..+
T Consensus 66 d~~v-----------~-~------~RF~GK~v~~~~v 84 (106)
T 2r48_A 66 DRSV-----------N-K------DRFIGKKLLSVGV 84 (106)
T ss_dssp SSCC-----------C-C------GGGTTSBEEEECH
T ss_pred CCcc-----------C-H------hHcCCCeEEEeCH
Confidence 7531 1 1 2678998765544
No 74
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=94.53 E-value=0.039 Score=40.58 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=54.4
Q ss_pred CceEEEEEeCCch--hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 46 QLKIFIIFYSMYG--HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~G--nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
.|||+.|-..++| +|...++++.+..++ .|.++.+-.=...- --+.++.+++.+||.|||++
T Consensus 2 ~~kivaVTaCptGiAhTymAaeaL~~aA~~-~G~~ikVEtqGs~G---------------~~n~Lt~~~I~~Ad~VIiA~ 65 (106)
T 2r4q_A 2 NAKILAVTACPTGIAHTFMAADALKEKAKE-LGVEIKVETNGSSG---------------IKHKLTAQEIEDAPAIIVAA 65 (106)
T ss_dssp -CCEEEEEECSCC--CHHHHHHHHHHHHHH-HTCCEEEEEEETTE---------------EESCCCHHHHHHCSCEEEEE
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCC---------------ccCCCCHHHHHhCCEEEEEe
Confidence 4799999999988 688888999888887 78776542211100 00123467899999999998
Q ss_pred cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 124 PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
-+-- + . .+|.||++.-..+
T Consensus 66 d~~v-----------~-~------~RF~GK~v~~~~v 84 (106)
T 2r4q_A 66 DKQV-----------E-M------ERFKGKRVLQVPV 84 (106)
T ss_dssp SSCC-----------C-C------GGGTTSBEEEECH
T ss_pred CCcc-----------C-H------hHcCCCeEEEeCH
Confidence 7531 1 1 2678998765444
No 75
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=93.56 E-value=0.092 Score=39.66 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=31.2
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCc-eEEEE
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGV-EGVLY 82 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~-ev~l~ 82 (252)
..|+||+++++|.-|.+..++..+.+.+.+ .|+ ++++.
T Consensus 11 ~~~kkIlvVC~sGmgTS~ml~~klkk~~~e-~gi~~~~V~ 49 (125)
T 1vkr_A 11 SHVRKIIVACDAGMGSSAMGAGVLRKKIQD-AGLSQISVT 49 (125)
T ss_dssp CCCCEEEECCSSSSHHHHHHHHHHHHHHHH-TTCTTSEEE
T ss_pred ccccEEEEECCCcHHHHHHHHHHHHHHHHH-CCCceEEEE
Confidence 357899999999999999889999999987 676 55543
No 76
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=93.09 E-value=0.76 Score=44.34 Aligned_cols=123 Identities=14% Similarity=0.126 Sum_probs=77.3
Q ss_pred cccCCCCCCCC-CCCCCCccccccccCCCCC-CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHH
Q 040588 14 FAIDMPEQDPS-NPDGVSSNLDQNQLTTTST-TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAE 91 (252)
Q Consensus 14 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~ 91 (252)
..+++|+.++. +|.-.|..|.|- .+..+ ...+||+|+-....|..+.-+..+.+.|++ +|++++++-...-.
T Consensus 497 l~~~~p~~~~~~~~~~~~~~ls~~--~~~~~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~-aG~~V~vVs~~~g~--- 570 (688)
T 2iuf_A 497 IGVEAPKPNSSFYHDNTTAHIGAF--GEKLAKLDGLKVGLLASVNKPASIAQGAKLQVALSS-VGVDVVVVAERXAN--- 570 (688)
T ss_dssp TTCCCCCCCGGGCCCCCCTTCSSS--SSCCSCCTTCEEEEECCTTCHHHHHHHHHHHHHHGG-GTCEEEEEESSCCT---
T ss_pred hCCCCCCCCccCCCCCCCcccccC--cCCCCCCCCCEEEEEecCCCCCcHHHHHHHHHHHHH-CCCEEEEEeccCCc---
Confidence 34567765432 344566777643 33222 234678887654589888888999999998 89999999875321
Q ss_pred HHhcccCCCCCCCCcccchhhhhccCeEEEeccccC-------------------CCchHHHHHHHHhhhhhhhhccCCC
Q 040588 92 VLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRF-------------------GSMASQMKAFFDSTFHLWEQQRLAG 152 (252)
Q Consensus 92 ~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~-------------------g~~~~~~k~fld~l~~~~~~~~l~g 152 (252)
..|... ...+-.++|+|||..-... ....+.+..|+..... .|
T Consensus 571 ----------~vD~t~-~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~-------~g 632 (688)
T 2iuf_A 571 ----------NVDETY-SASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFR-------FG 632 (688)
T ss_dssp ----------TCCEES-TTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHH-------HT
T ss_pred ----------ccccch-hcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHH-------cC
Confidence 001111 1124568999999755322 2345667777776542 58
Q ss_pred CcEEEEEe
Q 040588 153 VPAGFFVS 160 (252)
Q Consensus 153 K~~~if~s 160 (252)
|++++++.
T Consensus 633 KpIaAIc~ 640 (688)
T 2iuf_A 633 KTVGALGS 640 (688)
T ss_dssp CEEEEEGG
T ss_pred CEEEEECc
Confidence 99988875
No 77
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=91.50 E-value=0.52 Score=39.54 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=28.4
Q ss_pred CCCceEEEEEeCC----------chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 44 TGQLKIFIIFYSM----------YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 44 ~~~~kIlIIy~S~----------~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+.|+|||||-.|. +|....=+-...+.+++ +|++|++.....
T Consensus 1 m~m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~-aG~~V~iaS~~g 52 (244)
T 3kkl_A 1 MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEK-HGFEVDFVSETG 52 (244)
T ss_dssp --CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHT-TTCEEEEEESSS
T ss_pred CCCCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 3478999998773 45544434455677777 899999998754
No 78
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=89.32 E-value=0.34 Score=41.15 Aligned_cols=56 Identities=9% Similarity=-0.164 Sum_probs=34.4
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
.|+|||||=+|.... -+..+.+.+++ .|.+|+++...+. +. +..+|.+||+||+..
T Consensus 3 ~m~~vLiV~g~~~~~---~a~~l~~aL~~-~g~~V~~i~~~~~------------------~~-~~~~L~~yDvIIl~d 58 (259)
T 3rht_A 3 AMTRVLYCGDTSLET---AAGYLAGLMTS-WQWEFDYIPSHVG------------------LD-VGELLAKQDLVILSD 58 (259)
T ss_dssp ---CEEEEESSCTTT---THHHHHHHHHH-TTCCCEEECTTSC------------------BC-SSHHHHTCSEEEEES
T ss_pred CCceEEEECCCCchh---HHHHHHHHHHh-CCceEEEeccccc------------------cc-ChhHHhcCCEEEEcC
Confidence 478999996554321 22334444444 6888888876653 11 257899999999984
No 79
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=89.04 E-value=2.4 Score=40.89 Aligned_cols=122 Identities=13% Similarity=0.150 Sum_probs=70.9
Q ss_pred cccCCCCCCCC-CCCCCCccccccccCCCCCCCCceEEEEEeCCch-hHHHHHHHHHHhccccCCceEEEEECCCCCCHH
Q 040588 14 FAIDMPEQDPS-NPDGVSSNLDQNQLTTTSTTGQLKIFIIFYSMYG-HVEILARRMKKGVDSIDGVEGVLYRVPETLPAE 91 (252)
Q Consensus 14 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~ 91 (252)
..+++|+.++. +..-.|..|.|-.. +...-..+||+|+-. .| ..+.-+..+.+.+++ +|++++++-...-.
T Consensus 505 l~~~~~~~~~~~~~~~~~~~ls~~~~-~~~~l~grKVaILva--dG~fE~~El~~p~~aL~~-aGa~V~vVsp~~g~--- 577 (688)
T 3ej6_A 505 LGLEAPQPDPTYYHNNVTRGVSIFNE-SLPTIATLRVGVLST--TKGGSLDKAKALKEQLEK-DGLKVTVIAEYLAS--- 577 (688)
T ss_dssp HTSCCCSCCTTSCCCCCCSSCCSSSS-CCSCCTTCEEEEECC--SSSSHHHHHHHHHHHHHH-TTCEEEEEESSCCT---
T ss_pred hCCCCCCCCCCCCCCCCCcccccccC-CCCCccCCEEEEEcc--CCCccHHHHHHHHHHHHH-CCCEEEEEeCCCCC---
Confidence 34566665443 33445677776322 112233458888764 45 445566778888888 89999999875320
Q ss_pred HHhcccCCCCCCCCcccchhhhhccCeEEEecccc----------CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 92 VLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR----------FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 92 ~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y----------~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
. -|.. +.-..-.+||+|||-...- .....+.+..|+..... .+|++++++.
T Consensus 578 -----G-----vD~t-~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~-------hgKpIAAIch 638 (688)
T 3ej6_A 578 -----G-----VDQT-YSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYR-------WGKPVAAVGS 638 (688)
T ss_dssp -----T-----CCEE-TTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHH-------TTCCEEEEGG
T ss_pred -----C-----cccC-cccCChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHH-------cCCEEEEeCc
Confidence 0 0110 0112346799999954321 12344667778776542 6799988775
No 80
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=88.61 E-value=0.71 Score=37.55 Aligned_cols=103 Identities=11% Similarity=0.089 Sum_probs=49.3
Q ss_pred CCCCceEEEEEeCCch--hHHHHHHHHH--Hhcc--ccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhh--
Q 040588 43 TTGQLKIFIIFYSMYG--HVEILARRMK--KGVD--SIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLV-- 114 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~G--nT~~la~~i~--~~l~--~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~-- 114 (252)
|++|+||+|+-+...- ......+.+. ..+. + .+.+++++..... +- .....-... ++...+++.
T Consensus 2 ~m~m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~-~~~~v~~vs~~~~-~v--~~~~G~~i~----~d~~~~~~~~~ 73 (212)
T 3efe_A 2 GMQTKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDL-APLKVITVGANKE-MI--TTMGGLRIK----PDISLDECTLE 73 (212)
T ss_dssp ---CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTC-CCCCEEEEESSSC-CE--ECTTCCEEC----CSEEGGGCCCC
T ss_pred CCcccEEEEEECCCccHHHHHHHHHHHHhhhccccCC-CCeEEEEEECCCC-eE--EcCCCCEEe----cCcCHHHCCcc
Confidence 5667899877755321 1122233332 1111 3 5778888877542 10 000000000 111134444
Q ss_pred ccCeEEEe-ccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 115 HADGLLFG-FPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 115 ~aD~II~g-sP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
++|+||+. .+.+.....+.+..||.+... ++|.++.+++
T Consensus 74 ~~D~livpGG~~~~~~~~~~l~~~l~~~~~-------~gk~iaaiC~ 113 (212)
T 3efe_A 74 SKDLLILPGGTTWSEEIHQPILERIGQALK-------IGTIVAAICG 113 (212)
T ss_dssp TTCEEEECCCSCTTSGGGHHHHHHHHHHHH-------HTCEEEEETH
T ss_pred CCCEEEECCCCccccccCHHHHHHHHHHHH-------CCCEEEEEcH
Confidence 89999984 333444456777888877542 4566665554
No 81
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=88.37 E-value=0.28 Score=39.48 Aligned_cols=41 Identities=15% Similarity=-0.057 Sum_probs=22.9
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 43 TTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|-.||||+|+-+ .|..+.=+-...+.+++ .|++++++.+..
T Consensus 1 Gs~M~kV~ill~--dGfe~~E~~~p~~vl~~-ag~~v~~~s~~~ 41 (194)
T 4gdh_A 1 GSHMVKVCLFVA--DGTDEIEFSAPWGIFKR-AEIPIDSVYVGE 41 (194)
T ss_dssp ----CCEEEEEE--TTCCHHHHHHHHHHHHH-TTCCEEEEEESS
T ss_pred CCCCCEEEEEEC--CCcCHHHHHHHHHHHHH-CCCeEEEEEEcC
Confidence 346899998876 34432222234455666 788888887654
No 82
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=88.09 E-value=4.1 Score=34.77 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=47.5
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCC-ceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDG-VEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G-~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
....|||||.+...-.-......|++.+++ .| .+|++..-.+. + .+...+ .+.|.++|+||+.
T Consensus 2 ~~~~kvLiv~G~~~H~~~~~~~~l~~~l~~-~g~f~V~~~~d~~~-~-------------~d~~~f-~~~L~~~D~vV~~ 65 (281)
T 4e5v_A 2 RKPIKTLLITGQNNHNWQVSHVVLKQILEN-SGRFDVDFVISPEQ-G-------------KDMSGF-VLDFSPYQLVVLD 65 (281)
T ss_dssp CCCEEEEEEESCCSSCHHHHHHHHHHHHHH-TTSEEEEEEECCCT-T-------------SCCTTC-CCCCTTCSEEEEC
T ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHHh-cCCEEEEEEeCCcc-c-------------cchhHH-hhhhhcCCEEEEe
Confidence 345689999665422256677777787777 56 88888764321 0 011122 2468899999975
Q ss_pred ccccCCCc-hHHHHHHHHhh
Q 040588 123 FPTRFGSM-ASQMKAFFDST 141 (252)
Q Consensus 123 sP~y~g~~-~~~~k~fld~l 141 (252)
+. ...+ ..+.+.|.+.+
T Consensus 66 ~~--~~~l~~~~~~~l~~yV 83 (281)
T 4e5v_A 66 YN--GDSWPEETNRRFLEYV 83 (281)
T ss_dssp CC--SSCCCHHHHHHHHHHH
T ss_pred CC--CCcCCHHHHHHHHHHH
Confidence 42 2233 45556666554
No 83
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=84.56 E-value=2.6 Score=41.01 Aligned_cols=122 Identities=8% Similarity=-0.036 Sum_probs=68.1
Q ss_pred CCCCCCCCCccccccccCCCCC-CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCC
Q 040588 22 DPSNPDGVSSNLDQNQLTTTST-TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQ 100 (252)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~-~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~ 100 (252)
.+.+..-.|..|.|-. +... -..+||+|+-. .|..+.-+..+.+.|++ +|++++++....- + +........
T Consensus 577 ~~~~~~~~~~~ls~~~--~~~~ti~grKVaILla--DGfEe~El~~pvdaLr~-AG~~V~vVS~~~g-~--V~gs~G~~V 648 (753)
T 3ttv_A 577 PDVNGLKKDPSLSLYA--IPDGDVKGRVVAILLN--DEVRSADLLAILKALKA-KGVHAKLLYSRMG-E--VTADDGTVL 648 (753)
T ss_dssp CCBTTBSCCGGGCSSS--SCCCCCTTCEEEEECC--TTCCHHHHHHHHHHHHH-HTCEEEEEESSSS-E--EECTTSCEE
T ss_pred CCCCCCCCCccccccC--CCCCCCCCCEEEEEec--CCCCHHHHHHHHHHHHH-CCCEEEEEEcCCC-e--EEeCCCCEE
Confidence 3344344566776632 2222 23368888764 46656666777788877 7999999887542 1 000000000
Q ss_pred CCCCCcccchh--hhhccCeEEEecc-ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeC
Q 040588 101 KGIEVPVIAVD--DLVHADGLLFGFP-TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTG 162 (252)
Q Consensus 101 ~~d~~~~~~~~--~l~~aD~II~gsP-~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G 162 (252)
. .+.... ....+|+|||-.- .-.....+.+..|+.+... .+|+++.++.+.
T Consensus 649 ~----aD~t~~~v~s~~fDALVVPGGg~~~Lr~d~~vl~~Vre~~~-------~gKpIAAIC~Gp 702 (753)
T 3ttv_A 649 P----IAATFAGAPSLTVDAVIVPCGNIADIADNGDANYYLMEAYK-------HLKPIALAGDAR 702 (753)
T ss_dssp E----CCEETTTSCGGGCSEEEECCSCGGGTTTCHHHHHHHHHHHH-------TTCCEEEEGGGG
T ss_pred e----cccchhhCCCcCCCEEEECCCChHHhhhCHHHHHHHHHHHh-------cCCeEEEECchH
Confidence 0 000122 2346899999543 1123345678888877643 689998888643
No 84
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=81.38 E-value=2.2 Score=34.20 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=31.3
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
+||+||=+- .||+..+++++. + .|+++++++ + .+++.++|+||+-
T Consensus 3 ~~I~iiD~g-~~n~~si~~al~----~-~G~~~~v~~--~-----------------------~~~l~~~D~lilP 47 (211)
T 4gud_A 3 QNVVIIDTG-CANISSVKFAIE----R-LGYAVTISR--D-----------------------PQVVLAADKLFLP 47 (211)
T ss_dssp CCEEEECCC-CTTHHHHHHHHH----H-TTCCEEEEC--C-----------------------HHHHHHCSEEEEC
T ss_pred CEEEEEECC-CChHHHHHHHHH----H-CCCEEEEEC--C-----------------------HHHHhCCCEEEEC
Confidence 478888543 378887777663 3 577887642 2 4678889999993
No 85
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=81.08 E-value=3.2 Score=30.11 Aligned_cols=45 Identities=7% Similarity=0.003 Sum_probs=30.3
Q ss_pred CCCCCCCceEEEEEeC-CchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 40 TTSTTGQLKIFIIFYS-MYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 40 ~~~~~~~~kIlIIy~S-~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
++.++.|++ +++|++ .-+.++.+...+.+..++ .+++++.+++.+
T Consensus 23 ~~~~~~m~~-vv~y~~~~C~~C~~a~~~L~~l~~e-~~i~~~~vDId~ 68 (107)
T 2fgx_A 23 MNNQVEPRK-LVVYGREGCHLCEEMIASLRVLQKK-SWFELEVINIDG 68 (107)
T ss_dssp CCCCCCCCC-EEEEECSSCHHHHHHHHHHHHHHHH-SCCCCEEEETTT
T ss_pred CCCCCCccE-EEEEeCCCChhHHHHHHHHHHHHHh-cCCeEEEEECCC
Confidence 344555554 555555 468888777777666665 678888999875
No 86
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=80.18 E-value=4.8 Score=33.63 Aligned_cols=40 Identities=15% Similarity=-0.017 Sum_probs=26.2
Q ss_pred CceEEEEEeCC----------chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSM----------YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~----------~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+|||||..|. +|.-..=+-.....+++ +|++|++.....
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~-aG~~V~~aSp~g 58 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTA-AGFEVDVASETG 58 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 57899998773 14422222334566666 899999998754
No 87
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=78.38 E-value=2.1 Score=36.44 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=32.3
Q ss_pred CCCceEEEEEeC---------------CchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 44 TGQLKIFIIFYS---------------MYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 44 ~~~~kIlIIy~S---------------~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|.||||+++..+ ..|-.+..+..+++.+.+ .|.+|.++....
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~-~G~~v~v~~~~~ 57 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLE-LGHEVFLLGAPG 57 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHH-TTCEEEEESCTT
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHH-cCCeEEEEecCC
Confidence 346899999877 247777888888999988 799999887654
No 88
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=78.24 E-value=5.2 Score=33.28 Aligned_cols=40 Identities=18% Similarity=0.064 Sum_probs=25.1
Q ss_pred CceEEEEEeC---CchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYS---MYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S---~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
++||+|+-.| ..|....=+-...+.+++ .|++++++....
T Consensus 23 ~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~-aG~~V~~~S~~~ 65 (242)
T 3l3b_A 23 ALNSAVILAGCGHMDGSEIREAVLVMLELDR-HNVNFKCFAPNK 65 (242)
T ss_dssp -CEEEEECCCSSTTTSCCHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred cCEEEEEEecCCCCCCeeHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 3688888764 245443333344566666 788999888754
No 89
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=77.57 E-value=2.9 Score=35.05 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=12.0
Q ss_pred hhhhhccCeEEEec
Q 040588 110 VDDLVHADGLLFGF 123 (252)
Q Consensus 110 ~~~l~~aD~II~gs 123 (252)
.+++.+||+||+.-
T Consensus 72 ~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 72 IDELNRYDVIVISD 85 (256)
T ss_dssp HHHHHTCSEEEEES
T ss_pred hhHHhcCCEEEEeC
Confidence 56899999999984
No 90
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=77.33 E-value=23 Score=28.31 Aligned_cols=30 Identities=7% Similarity=0.057 Sum_probs=17.3
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
..+...|.||...+.. ...-..+.+++.+.
T Consensus 84 ~~~~~~D~vv~~a~~~--~~~~~~~~~~~~~~ 113 (236)
T 3qvo_A 84 QAMQGQDIVYANLTGE--DLDIQANSVIAAMK 113 (236)
T ss_dssp HHHTTCSEEEEECCST--THHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEcCCCC--chhHHHHHHHHHHH
Confidence 4467789999766532 22234556666553
No 91
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=76.91 E-value=8.6 Score=30.94 Aligned_cols=103 Identities=4% Similarity=-0.126 Sum_probs=52.4
Q ss_pred CceEEEEEeCC--------chhHHHHHHHHHHhccccCCceEEEEECCCCCCH-HHHhc----cc-----CCCCCCCCcc
Q 040588 46 QLKIFIIFYSM--------YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPA-EVLEQ----MK-----VPQKGIEVPV 107 (252)
Q Consensus 46 ~~kIlIIy~S~--------~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~-~~~~~----~~-----~~~~~d~~~~ 107 (252)
|+||+|+-+|. .|....=+-...+.+++ .|.+++++........ ..... .. -.. .+.
T Consensus 5 ~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~-ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i----~~~ 79 (224)
T 1u9c_A 5 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQE-KGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAAL----KHT 79 (224)
T ss_dssp CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHH-TTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHT----TSB
T ss_pred CceEEEEECCcccccCCCCCceeHHHHHHHHHHHHH-CCCeEEEECCCCCccccCccccccHHHHHhhhhHhh----cCC
Confidence 46899888753 44433333345566666 6889998887542100 00000 00 000 000
Q ss_pred cchhh--hhccCeEEEecc---ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 108 IAVDD--LVHADGLLFGFP---TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 108 ~~~~~--l~~aD~II~gsP---~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
....+ ..++|+||+... .+...-.+.+..|+.+... ++|+++.+++
T Consensus 80 ~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~-------~~k~iaaiC~ 130 (224)
T 1u9c_A 80 ARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAE-------DGRIIAAVCH 130 (224)
T ss_dssp EECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred CChHHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHH-------CCCEEEEECh
Confidence 11233 347999998643 2333445677778877542 4565555554
No 92
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=76.77 E-value=8.7 Score=37.24 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=65.7
Q ss_pred ccCCCCCCCC-CCCCCCccccccccC-CCCCCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHH
Q 040588 15 AIDMPEQDPS-NPDGVSSNLDQNQLT-TTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEV 92 (252)
Q Consensus 15 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~ 92 (252)
.+++|+.++. +..-.|..|.|-... -+....++||+|+-+. |....=+-...+.+++ .|++++++....-..
T Consensus 501 ~~~~p~~~~~~~~~~~~~~ls~~~~~~~~~~m~~rkVaILl~d--Gfe~~El~~p~dvL~~-AG~~V~ivS~~gg~V--- 574 (715)
T 1sy7_A 501 GGEAPTTTNHPNHGRKTINLSQTEFPPATPTIKSRRVAIIIAD--GYDNVAYDAAYAAISA-NQAIPLVIGPRRSKV--- 574 (715)
T ss_dssp CSCCCSCCSSCCCCCCCSSCSGGGCCCSSSCCTTCEEEEECCT--TBCHHHHHHHHHHHHH-TTCEEEEEESCSSCE---
T ss_pred CCCCCCCccccCCCCCCcccccccCCCCCCCCCCCEEEEEEcC--CCCHHHHHHHHHHHHh-cCCEEEEEECCCCce---
Confidence 4567765432 333456677653321 1222345788887753 4433334455666666 788998888653210
Q ss_pred HhcccCCCCCCCCcccchhh--hhccCeEEEeccc---cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 93 LEQMKVPQKGIEVPVIAVDD--LVHADGLLFGFPT---RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 93 ~~~~~~~~~~d~~~~~~~~~--l~~aD~II~gsP~---y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
.....-... ......+ ..++|+|||..-. +.....+.+..||.+... .+|+++.+++
T Consensus 575 ~ss~G~~v~----~d~~l~~v~~~~yDaViVPGG~~~~~~l~~~~~l~~~Lr~~~~-------~gK~IaAIC~ 636 (715)
T 1sy7_A 575 TAANGSTVQ----PHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFG-------HLKAIGATGE 636 (715)
T ss_dssp EBTTSCEEC----CSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred ecCCCceEe----cccccccCCcccCCEEEEcCCcccHhhhccCHHHHHHHHHHHh-------CCCEEEEECH
Confidence 000000000 0001222 3578999987531 112224556667666432 6788776665
No 93
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=76.38 E-value=6.6 Score=32.36 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=25.0
Q ss_pred CCceEEEEEeCC----------chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYSM----------YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S~----------~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.|+|||||-.|. +|....=+-...+.+++ .|.+++++....
T Consensus 2 ~m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~-ag~~v~~~s~~g 52 (243)
T 1rw7_A 2 APKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRK-EGFEVDFVSETG 52 (243)
T ss_dssp CCCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred CCceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHH-CCCEEEEECCCC
Confidence 367999988762 34322222234455655 788998887653
No 94
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=76.13 E-value=16 Score=30.42 Aligned_cols=78 Identities=6% Similarity=0.005 Sum_probs=43.6
Q ss_pred CceEEEEEeCCchhHHH---------HHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhcc
Q 040588 46 QLKIFIIFYSMYGHVEI---------LARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHA 116 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~---------la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~a 116 (252)
..||||...-++..... ++..|++.+++ .|.+|+...+.+.. ..++.+.+.+|
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~-~gf~V~~~t~dd~~-----------------~~~~~~~L~~~ 68 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAE-AGFDAATAVLDEPE-----------------HGLTDEVLDRC 68 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHH-TTCEEEEEESSSGG-----------------GGCCHHHHHTC
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhh-CCcEEEEEeccCcc-----------------ccCCHhHHhcC
Confidence 35788775433333211 24455777777 78899887765420 01124668999
Q ss_pred CeEEEeccccCCCch-HHHHHHHHhh
Q 040588 117 DGLLFGFPTRFGSMA-SQMKAFFDST 141 (252)
Q Consensus 117 D~II~gsP~y~g~~~-~~~k~fld~l 141 (252)
|+||+-+-+-.+.++ .+.+.|.+.+
T Consensus 69 DvvV~~~~~~~~~l~~~~~~al~~~V 94 (252)
T 1t0b_A 69 DVLVWWGHIAHDEVKDEVVERVHRRV 94 (252)
T ss_dssp SEEEEECSSCGGGSCHHHHHHHHHHH
T ss_pred CEEEEecCCCCCcCCHHHHHHHHHHH
Confidence 999984212223344 4445555444
No 95
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=75.05 E-value=4.5 Score=33.83 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=38.1
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe-c
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG-F 123 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g-s 123 (252)
++|+|+||-.....+...+.+.+. + .|++++++++....+ + ..++.++|+|||. +
T Consensus 2 ~~~~vliiqh~~~e~~~~i~~~l~----~-~G~~v~v~~~~~~~~------------------~-p~~~~~~d~lIl~GG 57 (250)
T 3m3p_A 2 SLKPVMIIQFSASEGPGHFGDFLA----G-EHIPFQVLRMDRSDP------------------L-PAEIRDCSGLAMMGG 57 (250)
T ss_dssp CCCCEEEEESSSSCCCHHHHHHHH----H-TTCCEEEEEGGGTCC------------------C-CSCGGGSSEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH----H-CCCeEEEEeccCCCc------------------C-cCccccCCEEEECCC
Confidence 357899998877777766666643 3 578899888754210 1 3457789988774 5
Q ss_pred c
Q 040588 124 P 124 (252)
Q Consensus 124 P 124 (252)
|
T Consensus 58 p 58 (250)
T 3m3p_A 58 P 58 (250)
T ss_dssp S
T ss_pred C
Confidence 5
No 96
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=74.63 E-value=2.4 Score=37.30 Aligned_cols=46 Identities=11% Similarity=0.210 Sum_probs=30.1
Q ss_pred CCCCCCCceEEEEEeC--C--------chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 40 TTSTTGQLKIFIIFYS--M--------YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 40 ~~~~~~~~kIlIIy~S--~--------~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+..+..||||++|... + .|-.+..+..+++.+.+ .|.+|+++....
T Consensus 14 ~~~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~-~G~~V~v~~~~~ 69 (438)
T 3c48_A 14 LVPRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAK-QGIEVDIYTRAT 69 (438)
T ss_dssp -----CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHH-TTCEEEEEEECC
T ss_pred cccCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHh-cCCEEEEEecCC
Confidence 4556778999999853 2 35566777788888887 789999887654
No 97
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=74.44 E-value=4.3 Score=29.80 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=23.8
Q ss_pred eEEEE-EeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCC
Q 040588 48 KIFII-FYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLP 89 (252)
Q Consensus 48 kIlII-y~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p 89 (252)
+++|| |+|+.+.....+ +.+++ .|.++.+++++...|
T Consensus 15 dv~iv~~Gs~~~~a~eA~----~~L~~-~Gi~v~vi~~r~~~P 52 (118)
T 3ju3_A 15 DITFVTWGSQKGPILDVI----EDLKE-EGISANLLYLKMFSP 52 (118)
T ss_dssp SEEEEEEGGGHHHHHHHH----HHHHH-TTCCEEEEEECSSCS
T ss_pred CEEEEEECccHHHHHHHH----HHHHH-CCCceEEEEECeEec
Confidence 45544 566665555444 44555 688899999987644
No 98
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=74.32 E-value=3.2 Score=33.63 Aligned_cols=81 Identities=11% Similarity=0.176 Sum_probs=41.9
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEE-EECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE
Q 040588 43 TTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVL-YRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l-~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
.+.||||.||= .|+ |...++..+.+ .|.++.+ ++................. ... ..+.+.++|.||+
T Consensus 20 ~m~mmkI~IIG---~G~---mG~~la~~l~~-~g~~V~~v~~r~~~~~~~l~~~~g~~~----~~~-~~~~~~~aDvVil 87 (220)
T 4huj_A 20 FQSMTTYAIIG---AGA---IGSALAERFTA-AQIPAIIANSRGPASLSSVTDRFGASV----KAV-ELKDALQADVVIL 87 (220)
T ss_dssp GGGSCCEEEEE---CHH---HHHHHHHHHHH-TTCCEEEECTTCGGGGHHHHHHHTTTE----EEC-CHHHHTTSSEEEE
T ss_pred hhcCCEEEEEC---CCH---HHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHhCCCc----ccC-hHHHHhcCCEEEE
Confidence 34578888874 343 45555556655 5777766 3322111111111111110 001 1455788999999
Q ss_pred eccccCCCchHHHHHHHHhh
Q 040588 122 GFPTRFGSMASQMKAFFDST 141 (252)
Q Consensus 122 gsP~y~g~~~~~~k~fld~l 141 (252)
+.|. ..+...+..+
T Consensus 88 avp~------~~~~~v~~~l 101 (220)
T 4huj_A 88 AVPY------DSIADIVTQV 101 (220)
T ss_dssp ESCG------GGHHHHHTTC
T ss_pred eCCh------HHHHHHHHHh
Confidence 9983 3455666554
No 99
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=73.98 E-value=8.8 Score=29.98 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=49.1
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHh---cccCCCCCCCCcccchhhh--hccCe
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLE---QMKVPQKGIEVPVIAVDDL--VHADG 118 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~---~~~~~~~~d~~~~~~~~~l--~~aD~ 118 (252)
..++||+|+-+. |....=+-...+.+++ .|.+++++..... +..... ...-.. .++...+++ .++|+
T Consensus 7 ~~~~~v~il~~~--g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~-~v~~~~~~~~~g~~v----~~~~~~~~~~~~~~D~ 78 (190)
T 2vrn_A 7 LTGKKIAILAAD--GVEEIELTSPRAAIEA-AGGTTELISLEPG-EIQSMKGDIEPQEKY----RVDHVVSEVQVSDYDG 78 (190)
T ss_dssp CTTCEEEEECCT--TCBHHHHHHHHHHHHH-TTCEEEEEESSSS-EEEEEETTTEEEEEE----ECSEEGGGCCGGGCSE
T ss_pred CCCCEEEEEeCC--CCCHHHHHHHHHHHHH-CCCEEEEEecCCC-ccccccccccCCcEE----eCCCChhhCChhhCCE
Confidence 456789887653 3222222234455555 6788888876532 100000 000000 001112333 57999
Q ss_pred EEEeccc---cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 119 LLFGFPT---RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 119 II~gsP~---y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
||+.... +.....+.+..|+.+... ++|+++.+++
T Consensus 79 livpGG~~~~~~~~~~~~l~~~l~~~~~-------~gk~i~aiC~ 116 (190)
T 2vrn_A 79 LLLPGGTVNPDKLRLEEGAMKFVRDMYD-------AGKPIAAICH 116 (190)
T ss_dssp EEECCCTHHHHHHTTCHHHHHHHHHHHH-------TTCCEEEC-C
T ss_pred EEECCCchhHHHHhhCHHHHHHHHHHHH-------cCCEEEEECH
Confidence 9987542 111224567777766532 5677666664
No 100
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=73.93 E-value=5.8 Score=31.37 Aligned_cols=100 Identities=11% Similarity=0.049 Sum_probs=49.1
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhh---hccCeEEE
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDL---VHADGLLF 121 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l---~~aD~II~ 121 (252)
+++||+|+-+- |....=+-...+.++. .|.+++++......+... ...-.. .+....+++ .++|+||+
T Consensus 2 m~~~v~ill~~--g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~~v~~--~~g~~v----~~d~~l~~~~~~~~~D~liv 72 (197)
T 2rk3_A 2 ASKRALVILAK--GAEEMETVIPVDVMRR-AGIKVTVAGLAGKDPVQC--SRDVVI----CPDASLEDAKKEGPYDVVVL 72 (197)
T ss_dssp CCCEEEEEECT--TCCHHHHHHHHHHHHH-TTCEEEEEETTCSSCEEC--TTSCEE----CCSEEHHHHHTTCCCSEEEE
T ss_pred CCCEEEEEECC--CCcHHHHHHHHHHHHH-CCCEEEEEEcCCCCcccc--CCCCEE----eCCcCHHHcCCccCCCEEEE
Confidence 34688877753 3333223344555655 688888887653211000 000000 011123455 78999998
Q ss_pred eccc---cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 122 GFPT---RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 122 gsP~---y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
.... +...-.+.+..|+.+.. -++|+++.+++
T Consensus 73 pGG~~~~~~l~~~~~~~~~l~~~~-------~~gk~i~aiC~ 107 (197)
T 2rk3_A 73 PGGNLGAQNLSESAAVKEILKEQE-------NRKGLIATICA 107 (197)
T ss_dssp CCCHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEETT
T ss_pred CCCchhHHHhhhCHHHHHHHHHHH-------HcCCEEEEECH
Confidence 6532 11112345566665543 25676665554
No 101
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=73.31 E-value=4.9 Score=32.47 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=31.7
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
-||||++|..- .+++..+++++.+ .|+++.++...+. .+++.++|+|||.
T Consensus 12 ~~~~i~~id~~-~~~~~~~~~~l~~-----~G~~~~vv~~~~~----------------------~~~l~~~DglIl~ 61 (212)
T 2a9v_A 12 HMLKIYVVDNG-GQWTHREWRVLRE-----LGVDTKIVPNDID----------------------SSELDGLDGLVLS 61 (212)
T ss_dssp CCCBEEEEEES-CCTTCHHHHHHHH-----TTCBCCEEETTSC----------------------GGGGTTCSEEEEE
T ss_pred ccceEEEEeCC-CccHHHHHHHHHH-----CCCEEEEEeCCCC----------------------HHHHhCCCEEEEC
Confidence 37899887743 3346656666643 4667777765421 3456679999885
No 102
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=73.07 E-value=3.7 Score=35.15 Aligned_cols=41 Identities=10% Similarity=0.051 Sum_probs=30.3
Q ss_pred CCceEEEEEeC--CchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYS--MYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S--~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.|+|+++|+-. ..|...++.+.+.+.+++ .|++++++.-..
T Consensus 7 ~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~ 49 (304)
T 3s40_A 7 KFEKVLLIVNPKAGQGDLHTNLTKIVPPLAA-AFPDLHILHTKE 49 (304)
T ss_dssp SCSSEEEEECTTCSSSCHHHHHHHHHHHHHH-HCSEEEEEECCS
T ss_pred CCCEEEEEECcccCCCchHHHHHHHHHHHHH-cCCeEEEEEccC
Confidence 47899888844 455677788888888887 788888776443
No 103
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=73.01 E-value=5.2 Score=32.44 Aligned_cols=64 Identities=19% Similarity=0.015 Sum_probs=37.8
Q ss_pred ceEEEEE-eCC----chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE
Q 040588 47 LKIFIIF-YSM----YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 47 ~kIlIIy-~S~----~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
.||++|= +|. ..+.+. +.+.+++ .|++++++++.+..+ ++. .+.+.++|+|++
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s----~~~a~~~-lG~~v~~~~i~~~~~----------------~~~-~~~l~~ad~I~l 85 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEA----GKKALES-LGLLVEELDIATESL----------------GEI-TTKLRKNDFIYV 85 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHH----HHHHHHH-TTCEEEECCTTTSCH----------------HHH-HHHHHHSSEEEE
T ss_pred CEEEEECCCCCCCCHHHHHHH----HHHHHHH-cCCeEEEEEecCCCh----------------HHH-HHHHHhCCEEEE
Confidence 5787664 443 134444 4455555 688888877665311 111 467899999999
Q ss_pred eccccCCCchHHHHH
Q 040588 122 GFPTRFGSMASQMKA 136 (252)
Q Consensus 122 gsP~y~g~~~~~~k~ 136 (252)
+. |+....++.
T Consensus 86 ~G----G~~~~l~~~ 96 (206)
T 3l4e_A 86 TG----GNTFFLLQE 96 (206)
T ss_dssp CC----SCHHHHHHH
T ss_pred CC----CCHHHHHHH
Confidence 65 555544443
No 104
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=72.89 E-value=9.9 Score=30.99 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=24.8
Q ss_pred CceEEEEEeCC---chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSM---YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~---~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+||+|+-+|. .|....=+-...+.+++ .|.+++++....
T Consensus 6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~-ag~~v~~~s~~g 48 (232)
T 1vhq_A 6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISR-SGAQAVCFAPDK 48 (232)
T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred CCeEEEEEccCCCCCCeeHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 67899887752 34432222234455666 688999888653
No 105
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=72.65 E-value=41 Score=28.39 Aligned_cols=125 Identities=8% Similarity=0.039 Sum_probs=62.6
Q ss_pred cCCCCCCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccC
Q 040588 38 LTTTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHAD 117 (252)
Q Consensus 38 ~~~~~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD 117 (252)
..+.....||||.||= .|+ |...++..+.+ .|.+|.+++.......... ...... .... .+.+.++|
T Consensus 13 ~~~~~~~~m~~I~iIG---~G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~l~-~~g~~~----~~~~-~~~~~~aD 79 (310)
T 3doj_A 13 GLVPRGSHMMEVGFLG---LGI---MGKAMSMNLLK-NGFKVTVWNRTLSKCDELV-EHGASV----CESP-AEVIKKCK 79 (310)
T ss_dssp -----CCCSCEEEEEC---CSH---HHHHHHHHHHH-TTCEEEEECSSGGGGHHHH-HTTCEE----CSSH-HHHHHHCS
T ss_pred ccCcccccCCEEEEEC---ccH---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHH-HCCCeE----cCCH-HHHHHhCC
Confidence 3445566688988873 342 44444555555 6778888876542111111 110000 0111 34467899
Q ss_pred eEEEeccccCCCchHHHHHHH---HhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 040588 118 GLLFGFPTRFGSMASQMKAFF---DSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 118 ~II~gsP~y~g~~~~~~k~fl---d~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
.||+..|.- ..++..+ +.+.. ...+++.+ ...++ .. ......+...+...|..+++.+
T Consensus 80 vvi~~vp~~-----~~~~~v~~~~~~l~~----~l~~g~~v---v~~st--~~-~~~~~~~~~~~~~~g~~~v~~p 140 (310)
T 3doj_A 80 YTIAMLSDP-----CAALSVVFDKGGVLE----QICEGKGY---IDMST--VD-AETSLKINEAITGKGGRFVEGP 140 (310)
T ss_dssp EEEECCSSH-----HHHHHHHHSTTCGGG----GCCTTCEE---EECSC--CC-HHHHHHHHHHHHHTTCEEEECC
T ss_pred EEEEEcCCH-----HHHHHHHhCchhhhh----ccCCCCEE---EECCC--CC-HHHHHHHHHHHHHcCCEEEeCC
Confidence 999999862 3456665 33322 11234432 22222 12 2345566677777888887654
No 106
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=72.30 E-value=7.1 Score=29.12 Aligned_cols=45 Identities=11% Similarity=-0.047 Sum_probs=29.1
Q ss_pred CCCCCceEEEEEeCC-ch-hHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 42 STTGQLKIFIIFYSM-YG-HVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 42 ~~~~~~kIlIIy~S~-~G-nT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
..+.++|++||..|. ++ .....+=.++..+.+ .|.+|.++-..+-
T Consensus 11 ~~~~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a-~g~eV~vFf~~dG 57 (134)
T 3mc3_A 11 EEEQXXXILIVVTHGPEDLDRTYAPLFMASISAS-MEYETSVFFMIXG 57 (134)
T ss_dssp ---CCCEEEEEECCCGGGTHHHHHHHHHHHHHHH-TTCEEEEEECTTG
T ss_pred cccccceEEEEEccCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEEeCc
Confidence 344568999988885 44 344455556666666 7889998887653
No 107
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=71.57 E-value=4.6 Score=34.85 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=31.1
Q ss_pred CCCCCCceEEEEEeC--C-chhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 41 TSTTGQLKIFIIFYS--M-YGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 41 ~~~~~~~kIlIIy~S--~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
..+..||||++|... . .|-.+..+..+++.+.+ .|.+|.++.....
T Consensus 15 ~~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~ 63 (406)
T 2gek_A 15 VPRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRD-AGHEVSVLAPASP 63 (406)
T ss_dssp ------CEEEEECSSCTTSCCHHHHHHHHHHHHHHH-TTCEEEEEESCCT
T ss_pred ccCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCCc
Confidence 344558999998854 2 36677778888888888 7999999887643
No 108
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=70.96 E-value=6.2 Score=31.65 Aligned_cols=101 Identities=13% Similarity=0.053 Sum_probs=51.5
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhh--hccCeEEEe
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDL--VHADGLLFG 122 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l--~~aD~II~g 122 (252)
+|+||+|+-+. |....=+-...+.++. .|.+++++......+..+ ...-... ++....++ .++|+||+.
T Consensus 8 m~~~v~ill~~--g~~~~e~~~~~~~l~~-ag~~v~~vs~~g~~~v~~--~~G~~v~----~d~~l~~~~~~~~D~livp 78 (208)
T 3ot1_A 8 MSKRILVPVAH--GSEEMETVIIVDTLVR-AGFQVTMAAVGDKLQVQG--SRGVWLT----AEQTLEACSAEAFDALALP 78 (208)
T ss_dssp -CCEEEEEECT--TCCHHHHHHHHHHHHH-TTCEEEEEESSSCSEEEC--TTSCEEE----CSEEGGGCCGGGCSEEEEC
T ss_pred cCCeEEEEECC--CCcHHHHHHHHHHHHH-CCCEEEEEEcCCCcceec--CCCcEEe----CCCCHHHCCCcCCCEEEEC
Confidence 35688877754 3333333344555655 688999988753111000 0000000 01112333 579999984
Q ss_pred cc---ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEee
Q 040588 123 FP---TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVST 161 (252)
Q Consensus 123 sP---~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~ 161 (252)
.- .+...-.+.+..|+.+... ++|+++.++++
T Consensus 79 GG~~~~~~l~~~~~l~~~l~~~~~-------~gk~i~aiC~G 113 (208)
T 3ot1_A 79 GGVGGAQAFADSTALLALIDAFSQ-------QGKLVAAICAT 113 (208)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHHH-------TTCEEEEETTH
T ss_pred CCchHHHHHhhCHHHHHHHHHHHH-------cCCEEEEEChh
Confidence 32 2222234567777766542 67877766653
No 109
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=70.39 E-value=10 Score=32.13 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=30.0
Q ss_pred CCCceEEEEEeCCch---hHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 44 TGQLKIFIIFYSMYG---HVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 44 ~~~~kIlIIy~S~~G---nT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.+++||+|+++.... -+-.-++.+++.+++ .|.++..++..+
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~-~g~~v~~i~~~~ 55 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRD-AGIDAHPFDPAE 55 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTT
T ss_pred hhcceEEEEECCCCCcceeeHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 456799999986543 223356778888887 799998888544
No 110
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=69.18 E-value=5.6 Score=32.37 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=20.2
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+||+||-+ ..+++..+++++ ++ .|+++.++.+..
T Consensus 25 ~~I~iiD~-g~~~~~~i~~~l----~~-~G~~~~vv~~~~ 58 (218)
T 2vpi_A 25 GAVVILDA-GAQYGKVIDRRV----RE-LFVQSEIFPLET 58 (218)
T ss_dssp TCEEEEEC-STTTTHHHHHHH----HH-TTCCEEEECTTC
T ss_pred CeEEEEEC-CCchHHHHHHHH----HH-CCCEEEEEECCC
Confidence 57888842 235555555544 33 577788776643
No 111
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=68.74 E-value=7.4 Score=34.44 Aligned_cols=38 Identities=5% Similarity=-0.145 Sum_probs=24.5
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
.++||+|+-+ .|....=+-...+.+++ .|++++++...
T Consensus 11 ~~~kv~ill~--dg~e~~E~~~~~~~l~~-ag~~v~~vs~~ 48 (396)
T 3uk7_A 11 NSRTVLILCG--DYMEDYEVMVPFQALQA-FGITVHTVCPG 48 (396)
T ss_dssp CCCEEEEECC--TTEEHHHHHHHHHHHHH-TTCEEEEECTT
T ss_pred cCCeEEEEeC--CCccHHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 3568887774 44433334455566666 78899888775
No 112
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=68.04 E-value=7.2 Score=31.12 Aligned_cols=96 Identities=7% Similarity=-0.063 Sum_probs=49.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCC--CHHHHhcccCCCCCCCC---cccchhhh--hccCe
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETL--PAEVLEQMKVPQKGIEV---PVIAVDDL--VHADG 118 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~--p~~~~~~~~~~~~~d~~---~~~~~~~l--~~aD~ 118 (252)
|+||+|+-+...-..+ +-...+.+++ .|.+++++...... +.. +. .++ +....+++ .++|+
T Consensus 2 ~~kV~ill~~g~~~~e--~~~~~~~l~~-ag~~v~~vs~~~~~~~~v~------~~---~g~~v~~~~~l~~~~~~~~D~ 69 (205)
T 2ab0_A 2 SASALVCLAPGSEETE--AVTTIDLLVR-GGIKVTTASVASDGNLAIT------CS---RGVKLLADAPLVEVADGEYDV 69 (205)
T ss_dssp CCEEEEEECTTCCHHH--HHHHHHHHHH-TTCEEEEEECSSTTCCEEE------CT---TSCEEECSEEHHHHTTSCCSE
T ss_pred CcEEEEEEcCCCcHHH--HHHHHHHHHH-CCCEEEEEeCCCCCCceee------cC---CCeEEecCCCHHHCCcccCCE
Confidence 4688888765432222 2234455555 68888888765421 100 00 001 01113344 67999
Q ss_pred EEEeccc---cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 119 LLFGFPT---RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 119 II~gsP~---y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
||+.... +...-.+.+..|+.+.. -++|+++.+++
T Consensus 70 livpGG~~~~~~l~~~~~l~~~l~~~~-------~~gk~i~aiC~ 107 (205)
T 2ab0_A 70 IVLPGGIKGAECFRDSTLLVETVKQFH-------RSGRIVAAICA 107 (205)
T ss_dssp EEECCCHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEETH
T ss_pred EEECCCcccHHHhccCHHHHHHHHHHH-------HcCCEEEEECH
Confidence 9986532 21122355666666543 26787776665
No 113
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=67.99 E-value=8.5 Score=30.49 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=29.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
+|||+||- -..+|...+++.+. + .|+++.++.- .+++.++|+|||..|
T Consensus 2 ~~~I~iid-~~~~~~~~~~~~l~----~-~G~~~~~~~~-------------------------~~~l~~~d~lil~G~ 49 (200)
T 1ka9_H 2 RMKALLID-YGSGNLRSAAKALE----A-AGFSVAVAQD-------------------------PKAHEEADLLVLPGQ 49 (200)
T ss_dssp -CEEEEEC-SSCSCHHHHHHHHH----H-TTCEEEEESS-------------------------TTSCSSCSEEEECCC
T ss_pred ccEEEEEe-CCCccHHHHHHHHH----H-CCCeEEEecC-------------------------hHHcccCCEEEECCC
Confidence 46898884 34567766554443 4 5777776541 123457999999664
No 114
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.64 E-value=11 Score=27.00 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=26.3
Q ss_pred CCCCCCceEEEEEeCCchhHHH--HHHHHHHhccccCCceEEEEECCC
Q 040588 41 TSTTGQLKIFIIFYSMYGHVEI--LARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 41 ~~~~~~~kIlIIy~S~~GnT~~--la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+|..+|+|.|...|..+.++. -.+.+.+-|++ .|++.+.++|..
T Consensus 2 ~~~~~~m~V~vy~~~~C~~C~~~~~~~~ak~~L~~-~gi~y~~vdI~~ 48 (111)
T 2ct6_A 2 SSGSSGMVIRVFIASSSGFVAIKKKQQDVVRFLEA-NKIEFEEVDITM 48 (111)
T ss_dssp CCCCCCCCEEEEECSSCSCHHHHHHHHHHHHHHHH-TTCCEEEEETTT
T ss_pred CCCcCccEEEEEEcCCCCCcccchhHHHHHHHHHH-cCCCEEEEECCC
Confidence 5666677776544444565552 22233333334 578889999875
No 115
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=67.25 E-value=29 Score=29.42 Aligned_cols=41 Identities=2% Similarity=-0.250 Sum_probs=25.5
Q ss_pred hhccCeEEEecc---ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 113 LVHADGLLFGFP---TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 113 l~~aD~II~gsP---~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
..++|+|||..- .|...-.+.+..||.+... +||+++.+++
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~-------~gk~VaaIC~ 186 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAIK-------NDRFVISLCH 186 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHHH-------cCCEEEEECc
Confidence 468999998653 3333345678888877542 4566555554
No 116
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=66.98 E-value=11 Score=29.60 Aligned_cols=99 Identities=10% Similarity=-0.002 Sum_probs=48.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhh--hccCeEEEec
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDL--VHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l--~~aD~II~gs 123 (252)
++||+|+-+ .|....=+-...+.+++ .|.+++++......+. .....-... ++...+++ .++|+||+..
T Consensus 5 ~kkv~ill~--~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~v--~~~~g~~i~----~d~~l~~~~~~~~D~livpG 75 (190)
T 4e08_A 5 SKSALVILA--PGAEEMEFIIAADVLRR-AGIKVTVAGLNGGEAV--KCSRDVQIL----PDTSLAQVASDKFDVVVLPG 75 (190)
T ss_dssp CCEEEEEEC--TTCCHHHHHHHHHHHHH-TTCEEEEEESSSSSCE--ECTTSCEEE----CSEETGGGTTCCCSEEEECC
T ss_pred CcEEEEEEC--CCchHHHHHHHHHHHHH-CCCEEEEEECCCCcce--ecCCCcEEE----CCCCHHHCCcccCCEEEECC
Confidence 357887775 34333333344566666 6889998887641110 000000000 01112333 3689999854
Q ss_pred c---ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 124 P---TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 124 P---~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
- .+...-.+.+..||.+... ++|+++.+++
T Consensus 76 G~~~~~~~~~~~~~~~~l~~~~~-------~~k~i~aiC~ 108 (190)
T 4e08_A 76 GLGGSNAMGESSLVGDLLRSQES-------GGGLIAAICA 108 (190)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred CChHHHHhhhCHHHHHHHHHHHH-------CCCEEEEECH
Confidence 2 1112223456666666432 5677766554
No 117
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=66.80 E-value=15 Score=28.83 Aligned_cols=80 Identities=11% Similarity=-0.113 Sum_probs=40.7
Q ss_pred HHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchh--hhhccCeEEEecc--ccCCCchHHHHHHHHhh
Q 040588 66 RMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVD--DLVHADGLLFGFP--TRFGSMASQMKAFFDST 141 (252)
Q Consensus 66 ~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~--~l~~aD~II~gsP--~y~g~~~~~~k~fld~l 141 (252)
...+.+++ .|++++++...... ......-.. .++...+ +..+||+||+-.- .....-.+.+..|+.+.
T Consensus 26 ~p~~~l~~-ag~~V~~~s~~~~~---v~~~~G~~v----~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~ 97 (177)
T 4hcj_A 26 ESKKIFES-AGYKTKVSSTFIGT---AQGKLGGMT----NIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLF 97 (177)
T ss_dssp HHHHHHHH-TTCEEEEEESSSEE---EEETTSCEE----EECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHH-CCCEEEEEECCCCe---EeeCCCCEE----ecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHH
Confidence 35566666 79999998865420 000000000 0111122 3467999998421 22223346677787765
Q ss_pred hhhhhhccCCCCcEEEEEe
Q 040588 142 FHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 142 ~~~~~~~~l~gK~~~if~s 160 (252)
.. ++|+++.+++
T Consensus 98 ~~-------~~k~iaaIC~ 109 (177)
T 4hcj_A 98 LD-------NQKIVAGIGS 109 (177)
T ss_dssp HH-------TTCEEEEETT
T ss_pred HH-------hCCEEEEecc
Confidence 42 5666665553
No 118
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=65.61 E-value=15 Score=30.75 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=30.6
Q ss_pred CceEEEEEeCCc---hhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMY---GHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~---GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+|||+|+++... --+..-++.+++.+++ .|.++..+++.+
T Consensus 3 ~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (307)
T 3r5x_A 3 AMRIGVIMGGVSSEKQVSIMTGNEMIANLDK-NKYEIVPITLNE 45 (307)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHHSCT-TTEEEEEEECSS
T ss_pred CcEEEEEeCCCCcchHhHHHHHHHHHHHHHH-CCCEEEEEcccC
Confidence 589999997653 2234457888899988 899999988864
No 119
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=65.56 E-value=11 Score=30.16 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=25.8
Q ss_pred hccCeEEEe-ccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 114 VHADGLLFG-FPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 114 ~~aD~II~g-sP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
.++|+||+. .+-+.. ..+.+..||.+... ++|+++.+++
T Consensus 62 ~~~D~livpGG~~~~~-~~~~l~~~l~~~~~-------~gk~iaaiC~ 101 (206)
T 3f5d_A 62 ANFNLLVMIGGDSWSN-DNKKLLHFVKTAFQ-------KNIPIAAICG 101 (206)
T ss_dssp SCCSEEEECCBSCCCC-CCHHHHHHHHHHHH-------TTCCEEEETH
T ss_pred cCCCEEEEcCCCChhh-cCHHHHHHHHHHHH-------cCCEEEEECH
Confidence 378999884 332223 56778888877542 6788777765
No 120
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=64.26 E-value=9.9 Score=33.07 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=33.5
Q ss_pred CCCceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 44 TGQLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 44 ~~~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+.+|||+++..+. .|-.+..+..+++.+.+ .|.+++++-+..
T Consensus 38 ~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~-~G~~v~v~~~~~ 80 (416)
T 2x6q_A 38 LKGRSFVHVNSTSFGGGVAEILHSLVPLLRS-IGIEARWFVIEG 80 (416)
T ss_dssp TTTCEEEEEESCSSSSTHHHHHHHHHHHHHH-TTCEEEEEECCC
T ss_pred hhccEEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 4568999998775 46677788888888887 799999887754
No 121
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=64.08 E-value=28 Score=30.39 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=20.5
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhh
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFH 143 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~ 143 (252)
+.+.++|.||++.|.+ .++.+++.+..
T Consensus 95 ea~~~aDvVilaVp~~------~~~~vl~~i~~ 121 (356)
T 3k96_A 95 ASLEGVTDILIVVPSF------AFHEVITRMKP 121 (356)
T ss_dssp HHHTTCCEEEECCCHH------HHHHHHHHHGG
T ss_pred HHHhcCCEEEECCCHH------HHHHHHHHHHH
Confidence 4567899999999985 56777777653
No 122
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=62.34 E-value=13 Score=30.43 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=37.9
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 46 QLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
..||++|=+.. .+..+--.+.+.+.+++ .|+++..+++.+. ..+.+.++|+|||+.
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~-lG~~~~~v~~~~d---------------------~~~~l~~ad~I~lpG- 87 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAP-LGVNVTGIHRVAD---------------------PLAAIEKAEIIIVGG- 87 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGG-GTCEEEETTSSSC---------------------HHHHHHHCSEEEECC-
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEecccc---------------------HHHHHhcCCEEEECC-
Confidence 46888875432 22233344455555666 6766554433221 147899999999986
Q ss_pred ccCCCchHHHHHH
Q 040588 125 TRFGSMASQMKAF 137 (252)
Q Consensus 125 ~y~g~~~~~~k~f 137 (252)
|+....++.+
T Consensus 88 ---G~~~~~~~~l 97 (229)
T 1fy2_A 88 ---GNTFQLLKES 97 (229)
T ss_dssp ---SCHHHHHHHH
T ss_pred ---CcHHHHHHHH
Confidence 5555444443
No 123
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=61.98 E-value=21 Score=28.10 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=30.2
Q ss_pred ce-EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhh--ccCeEEE-e
Q 040588 47 LK-IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLV--HADGLLF-G 122 (252)
Q Consensus 47 ~k-IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~--~aD~II~-g 122 (252)
|+ |+||-.- ...+..+++.+. + .|++++++...+. ..+++. ++|+||| |
T Consensus 1 m~mi~iid~~-~s~~~~~~~~l~----~-~G~~~~v~~~~~~---------------------~~~~~~~~~~dglil~g 53 (195)
T 1qdl_B 1 MDLTLIIDNY-DSFVYNIAQIVG----E-LGSYPIVIRNDEI---------------------SIKGIERIDPDRLIISP 53 (195)
T ss_dssp CCEEEEEECS-CSSHHHHHHHHH----H-TTCEEEEEETTTS---------------------CHHHHHHHCCSEEEECC
T ss_pred CCEEEEEECC-CchHHHHHHHHH----h-CCCEEEEEeCCCC---------------------CHHHHhhCCCCEEEECC
Confidence 35 8777622 233554454443 3 5778888876432 123443 5999999 6
Q ss_pred ccc
Q 040588 123 FPT 125 (252)
Q Consensus 123 sP~ 125 (252)
.|-
T Consensus 54 G~~ 56 (195)
T 1qdl_B 54 GPG 56 (195)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 124
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=61.80 E-value=27 Score=29.43 Aligned_cols=66 Identities=17% Similarity=0.115 Sum_probs=41.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
++||.||=+. | .|...++..+.+ .|.+|.+++.... ... .+.+.++|.||++.|.
T Consensus 21 ~~~I~iIGg~--G---~mG~~la~~l~~-~G~~V~~~~~~~~------------------~~~-~~~~~~aDvVilavp~ 75 (298)
T 2pv7_A 21 IHKIVIVGGY--G---KLGGLFARYLRA-SGYPISILDREDW------------------AVA-ESILANADVVIVSVPI 75 (298)
T ss_dssp CCCEEEETTT--S---HHHHHHHHHHHT-TTCCEEEECTTCG------------------GGH-HHHHTTCSEEEECSCG
T ss_pred CCEEEEEcCC--C---HHHHHHHHHHHh-CCCeEEEEECCcc------------------cCH-HHHhcCCCEEEEeCCH
Confidence 4577776212 3 355566666666 6878887764321 011 3457889999999999
Q ss_pred cCCCchHHHHHHHHhhh
Q 040588 126 RFGSMASQMKAFFDSTF 142 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~ 142 (252)
.. +..+++.+.
T Consensus 76 ~~------~~~vl~~l~ 86 (298)
T 2pv7_A 76 NL------TLETIERLK 86 (298)
T ss_dssp GG------HHHHHHHHG
T ss_pred HH------HHHHHHHHH
Confidence 74 555665553
No 125
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=61.73 E-value=42 Score=27.97 Aligned_cols=117 Identities=13% Similarity=0.133 Sum_probs=57.3
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.||||.||=.-.-|. .+|.. +.+ .|.+|.+++........ +....... .... .+.+.++|.||+..|
T Consensus 2 ~m~~I~iiG~G~mG~--~~a~~----l~~-~G~~V~~~d~~~~~~~~-~~~~g~~~----~~~~-~~~~~~aDvvi~~vp 68 (302)
T 2h78_A 2 HMKQIAFIGLGHMGA--PMATN----LLK-AGYLLNVFDLVQSAVDG-LVAAGASA----ARSA-RDAVQGADVVISMLP 68 (302)
T ss_dssp -CCEEEEECCSTTHH--HHHHH----HHH-TTCEEEEECSSHHHHHH-HHHTTCEE----CSSH-HHHHTTCSEEEECCS
T ss_pred CCCEEEEEeecHHHH--HHHHH----HHh-CCCeEEEEcCCHHHHHH-HHHCCCeE----cCCH-HHHHhCCCeEEEECC
Confidence 367888873222232 23443 334 57788877654211001 11100000 0011 344678999999998
Q ss_pred ccCCCchHHHHHHHH---hhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 040588 125 TRFGSMASQMKAFFD---STFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 125 ~y~g~~~~~~k~fld---~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
. +..++..+. .+.. .+ +++. +...++. . ......+...+...|..++..+
T Consensus 69 ~-----~~~~~~v~~~~~~~~~-----~l~~~~~---vi~~st~--~-~~~~~~l~~~~~~~g~~~~~~p 122 (302)
T 2h78_A 69 A-----SQHVEGLYLDDDGLLA-----HIAPGTL---VLECSTI--A-PTSARKIHAAARERGLAMLDAP 122 (302)
T ss_dssp C-----HHHHHHHHHSSSCGGG-----SSCSSCE---EEECSCC--C-HHHHHHHHHHHHHTTCCEEECC
T ss_pred C-----HHHHHHHHcCchhHHh-----cCCCCcE---EEECCCC--C-HHHHHHHHHHHHHcCCEEEEEE
Confidence 6 345677776 4332 23 3443 2222221 2 2234566667777787777643
No 126
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=61.68 E-value=18 Score=29.63 Aligned_cols=53 Identities=6% Similarity=-0.009 Sum_probs=35.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
.+|+||-.++.+|...+.+.+.+ .|+++.++...+. + .+ .+.+.++|+|||..
T Consensus 13 ~~~~~i~~~~~~~~~~i~~~l~~-----~G~~v~v~~~~~~---------------~---~~-~~~l~~~Dglil~G 65 (239)
T 1o1y_A 13 VRVLAIRHVEIEDLGMMEDIFRE-----KNWSFDYLDTPKG---------------E---KL-ERPLEEYSLVVLLG 65 (239)
T ss_dssp CEEEEECSSTTSSCTHHHHHHHH-----TTCEEEEECGGGT---------------C---CC-SSCGGGCSEEEECC
T ss_pred eEEEEEECCCCCCchHHHHHHHh-----CCCcEEEeCCcCc---------------c---cc-ccchhcCCEEEECC
Confidence 48999999988887766665543 4667776655321 0 11 34577899999864
No 127
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=61.35 E-value=48 Score=27.47 Aligned_cols=116 Identities=9% Similarity=0.067 Sum_probs=57.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||||.||=.-.-|. .+|..++ + .|.+|.+++............ .... .... .+.+.++|.||+..|.
T Consensus 1 M~~I~iiG~G~mG~--~~a~~l~----~-~G~~V~~~dr~~~~~~~~~~~-g~~~----~~~~-~~~~~~advvi~~v~~ 67 (287)
T 3pdu_A 1 MTTYGFLGLGIMGG--PMAANLV----R-AGFDVTVWNRNPAKCAPLVAL-GARQ----ASSP-AEVCAACDITIAMLAD 67 (287)
T ss_dssp CCCEEEECCSTTHH--HHHHHHH----H-HTCCEEEECSSGGGGHHHHHH-TCEE----CSCH-HHHHHHCSEEEECCSS
T ss_pred CCeEEEEccCHHHH--HHHHHHH----H-CCCeEEEEcCCHHHHHHHHHC-CCee----cCCH-HHHHHcCCEEEEEcCC
Confidence 57887773222232 2444443 3 466788877653211111111 0000 0011 3445789999999996
Q ss_pred cCCCchHHHHHHH---HhhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 040588 126 RFGSMASQMKAFF---DSTFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 126 y~g~~~~~~k~fl---d~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
+..++..+ +.+.. .+ +++.+ ...++ .. ......+.+.+...|..++..+
T Consensus 68 -----~~~~~~v~~~~~~l~~-----~l~~g~~v---v~~st--~~-~~~~~~~~~~~~~~g~~~~~~p 120 (287)
T 3pdu_A 68 -----PAAAREVCFGANGVLE-----GIGGGRGY---IDMST--VD-DETSTAIGAAVTARGGRFLEAP 120 (287)
T ss_dssp -----HHHHHHHHHSTTCGGG-----TCCTTCEE---EECSC--CC-HHHHHHHHHHHHHTTCEEEECC
T ss_pred -----HHHHHHHHcCchhhhh-----cccCCCEE---EECCC--CC-HHHHHHHHHHHHHcCCEEEECC
Confidence 23566666 44332 23 34432 22222 12 2345566677777888877653
No 128
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=60.77 E-value=14 Score=29.13 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=21.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
++||+|+-+...--.+ +-.+.+.++. .|.+++++....
T Consensus 23 ~~kV~ill~~g~~~~e--~~~~~~~l~~-ag~~v~~vs~~~ 60 (193)
T 1oi4_A 23 SKKIAVLITDEFEDSE--FTSPADEFRK-AGHEVITIEKQA 60 (193)
T ss_dssp CCEEEEECCTTBCTHH--HHHHHHHHHH-TTCEEEEEESST
T ss_pred CCEEEEEECCCCCHHH--HHHHHHHHHH-CCCEEEEEECCC
Confidence 5688887764322221 2234444555 678888887654
No 129
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=60.41 E-value=12 Score=29.51 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=9.1
Q ss_pred hhhccCeEEEec
Q 040588 112 DLVHADGLLFGF 123 (252)
Q Consensus 112 ~l~~aD~II~gs 123 (252)
++.++|+||+..
T Consensus 35 ~l~~~d~iil~G 46 (196)
T 2nv0_A 35 QLNEVDGLILPG 46 (196)
T ss_dssp GGGGCSEEEECC
T ss_pred HHhhCCEEEECC
Confidence 466899999853
No 130
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=58.51 E-value=15 Score=29.89 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=33.3
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
|||++|-....-+-..+.+.+ ++ .|++++++++.... . + ++++.++|+||+.
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l----~~-~g~~~~~~~~~~~~---------------~---~-p~~~~~~d~lii~ 52 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWA----AL-RGHDVSMTKVYRYE---------------K---L-PKDIDDFDMLILM 52 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHH----HH-TTCEEEEEEGGGTC---------------C---C-CSCGGGCSEEEEC
T ss_pred CeEEEEeCCCCCCchHHHHHH----HH-CCCeEEEEeeeCCC---------------C---C-CCCccccCEEEEC
Confidence 689999987654333444443 33 58889998875421 1 1 2357789998886
No 131
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=56.23 E-value=61 Score=24.99 Aligned_cols=31 Identities=23% Similarity=0.092 Sum_probs=19.4
Q ss_pred EEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 49 IFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 49 IlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|+||-+ ..+++..+++.+.+ .|++++++...
T Consensus 3 i~iid~-~~~~~~~~~~~l~~-----~G~~~~~~~~~ 33 (189)
T 1wl8_A 3 IVIMDN-GGQYVHRIWRTLRY-----LGVETKIIPNT 33 (189)
T ss_dssp EEEEEC-SCTTHHHHHHHHHH-----TTCEEEEEETT
T ss_pred EEEEEC-CCchHHHHHHHHHH-----CCCeEEEEECC
Confidence 776643 24567766666543 57788887754
No 132
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=55.92 E-value=19 Score=31.88 Aligned_cols=100 Identities=10% Similarity=0.001 Sum_probs=47.6
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccC-CCCCCCCcccchhhh--hccCeEEE
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKV-PQKGIEVPVIAVDDL--VHADGLLF 121 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~-~~~~d~~~~~~~~~l--~~aD~II~ 121 (252)
.|+||+|+-+. |....=+-...+.++. .|.+++++........ .....- ... ++....++ .++|+||+
T Consensus 9 ~mkkV~ILl~d--gf~~~El~~p~dvL~~-Ag~~v~vvS~~~g~~V--~ss~G~~~i~----~d~~l~~v~~~~~DaLiV 79 (365)
T 3fse_A 9 GKKKVAILIEQ--AVEDTEFIIPCNGLKQ-AGFEVVVLGSRMNEKY--KGKRGRLSTQ----ADGTTTEAIASEFDAVVI 79 (365)
T ss_dssp --CEEEEECCT--TBCHHHHHHHHHHHHH-TTCEEEEEESSSSCCE--ECTTSCCEEC----CSEETTTCCGGGCSEEEE
T ss_pred CceEEEEEECC--CCcHHHHHHHHHHHHH-CCCEEEEEECCCCcee--ecCCCceEEe----CCCCHhhCCCcCCCEEEE
Confidence 46788877754 3333333344556655 6888988887542100 000000 000 00112333 36999988
Q ss_pred eccc--cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 122 GFPT--RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 122 gsP~--y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
..-. ......+.+..|+.+... ++|+++.+++
T Consensus 80 PGG~g~~~l~~~~~l~~~Lr~~~~-------~gk~IaAIC~ 113 (365)
T 3fse_A 80 PGGMAPDKMRRNPNTVRFVQEAME-------QGKLVAAVCH 113 (365)
T ss_dssp CCBTHHHHHTTCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred ECCcchhhccCCHHHHHHHHHHHH-------CCCEEEEECH
Confidence 4321 111234567777766532 4555555443
No 133
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=54.06 E-value=21 Score=27.03 Aligned_cols=94 Identities=7% Similarity=0.062 Sum_probs=45.8
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCc---ccchhhh--hccCeEEE
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVP---VIAVDDL--VHADGLLF 121 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~---~~~~~~l--~~aD~II~ 121 (252)
|||+|+-+.. ....=+-...+.++. .|.+++++..... + ..+. .++. +...+++ .++|+||+
T Consensus 3 ~ki~il~~~g--~~~~e~~~~~~~l~~-ag~~v~~vs~~~~-~------v~~~---~g~~i~~~~~~~~~~~~~~D~liv 69 (168)
T 3l18_A 3 MKVLFLSADG--FEDLELIYPLHRIKE-EGHEVYVASFQRG-K------ITGK---HGYSVNVDLTFEEVDPDEFDALVL 69 (168)
T ss_dssp CEEEEECCTT--BCHHHHHHHHHHHHH-TTCEEEEEESSSE-E------EECT---TSCEEEECEEGGGCCGGGCSEEEE
T ss_pred cEEEEEeCCC--ccHHHHHHHHHHHHH-CCCEEEEEECCCC-E------EecC---CCcEEeccCChhHCCHhhCCEEEE
Confidence 6888776543 222222234455555 6888888876531 0 0000 0110 0112333 46999998
Q ss_pred eccc--cCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 122 GFPT--RFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 122 gsP~--y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
.... ......+.+..|+.+... ++|+++.+++
T Consensus 70 pGG~~~~~~~~~~~l~~~l~~~~~-------~~k~i~aiC~ 103 (168)
T 3l18_A 70 PGGKAPEIVRLNEKAVMITRRMFE-------DDKPVASICH 103 (168)
T ss_dssp CCBSHHHHHTTCHHHHHHHHHHHH-------TTCCEEEETT
T ss_pred CCCcCHHHhccCHHHHHHHHHHHH-------CCCEEEEECH
Confidence 5421 111234556677766532 4566555543
No 134
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=53.49 E-value=15 Score=31.97 Aligned_cols=29 Identities=21% Similarity=0.254 Sum_probs=21.0
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHh
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDS 140 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~ 140 (252)
.+.+.++|.||-..|-+++ +..++..++.
T Consensus 72 ~~~~~~~DvVi~~~p~~~~--~~v~~~~~~~ 100 (365)
T 3abi_A 72 VEVMKEFELVIGALPGFLG--FKSIKAAIKS 100 (365)
T ss_dssp HHHHTTCSEEEECCCGGGH--HHHHHHHHHH
T ss_pred HHHHhCCCEEEEecCCccc--chHHHHHHhc
Confidence 4557899999999998753 3556666654
No 135
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=53.24 E-value=23 Score=27.57 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=32.0
Q ss_pred CceEEEEEeCCch-hHHHHHHHHHHhccccCCc-eEEEEECCCC
Q 040588 46 QLKIFIIFYSMYG-HVEILARRMKKGVDSIDGV-EGVLYRVPET 87 (252)
Q Consensus 46 ~~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~-ev~l~~l~~~ 87 (252)
..||.||...-+- -|+.|.+...+.+.+ .|+ +++++.+.-.
T Consensus 17 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~-~G~~~i~v~~VPGa 59 (160)
T 2c92_A 17 GVRLAIVASSWHGKICDALLDGARKVAAG-CGLDDPTVVRVLGA 59 (160)
T ss_dssp TCCEEEEEECSSHHHHHHHHHHHHHHHHH-TTCSCCEEEEESSG
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCceEEEECCcH
Confidence 3589999877554 488999999999988 787 7788888754
No 136
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=52.37 E-value=37 Score=21.96 Aligned_cols=38 Identities=5% Similarity=-0.005 Sum_probs=28.3
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
++.+++.+.-+.++++...+.+-+++ .+.+++++++..
T Consensus 3 ~~~~f~~~~C~~C~~~~~~l~~~~~~-~~~~~~~~~v~~ 40 (80)
T 2k8s_A 3 SKAIFYHAGCPVCVSAEQAVANAIDP-SKYTVEIVHLGT 40 (80)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHSCT-TTEEEEEEETTT
T ss_pred ceEEEeCCCCCchHHHHHHHHHHHHh-cCCeEEEEEecC
Confidence 44555544568999988888887777 678888888864
No 137
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=51.50 E-value=93 Score=28.42 Aligned_cols=123 Identities=12% Similarity=0.204 Sum_probs=61.9
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcc--cCCC-CCCCCcccchhhhhccCeEEE
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQM--KVPQ-KGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~--~~~~-~~d~~~~~~~~~l~~aD~II~ 121 (252)
.||+|.||= .| .|...++..+.+ .|.+|.+++............. .... ...+..++ ...+.++|.||+
T Consensus 3 ~~~kIgiIG---lG---~MG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~-v~~l~~aDvVil 74 (484)
T 4gwg_A 3 AQADIALIG---LA---VMGQNLILNMND-HGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEM-VSKLKKPRRIIL 74 (484)
T ss_dssp CCBSEEEEC---CS---HHHHHHHHHHHH-TTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHH-HHTBCSSCEEEE
T ss_pred CCCEEEEEC---hh---HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHH-HhhccCCCEEEE
Confidence 467887764 23 244444555555 6778888876532111111110 0000 01111121 223345999999
Q ss_pred eccccCCCchHHHHHHHHhhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCc
Q 040588 122 GFPTRFGSMASQMKAFFDSTFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGY 191 (252)
Q Consensus 122 gsP~y~g~~~~~~k~fld~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~ 191 (252)
..|.- ..+..+++.+.. .+ +|+ ++...++. ... ....+.+.+...|..+++.+.
T Consensus 75 ~Vp~~-----~~v~~vl~~l~~-----~L~~g~---iIId~st~--~~~-~t~~~~~~l~~~Gi~fvd~pV 129 (484)
T 4gwg_A 75 LVKAG-----QAVDDFIEKLVP-----LLDTGD---IIIDGGNS--EYR-DTTRRCRDLKAKGILFVGSGV 129 (484)
T ss_dssp CSCSS-----HHHHHHHHHHGG-----GCCTTC---EEEECSCC--CHH-HHHHHHHHHHHTTCEEEEEEE
T ss_pred ecCCh-----HHHHHHHHHHHH-----hcCCCC---EEEEcCCC--Cch-HHHHHHHHHHhhccccccCCc
Confidence 99973 356667766543 23 333 33433331 222 234555667778888876543
No 138
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=50.81 E-value=14 Score=32.04 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=30.7
Q ss_pred CceEEEEEeC----CchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFIIFYS----MYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S----~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
.||||+|..+ ..|-.+..+..+++.+.+ .|.+|+++...
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~-~G~~V~v~~~~ 44 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALAS-LGHEVLVFTPS 44 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 4799998855 257777888888999988 89999988743
No 139
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=50.55 E-value=1.1e+02 Score=25.56 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=58.3
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
+|||.|| + .|+ |...++..+.+ .|.+|.+++........ +..........+ . .+.+.++|.||+..|.
T Consensus 7 ~~~I~iI-G--~G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~~-~~~~g~~~~~~~---~-~e~~~~aDvvi~~vp~ 74 (303)
T 3g0o_A 7 DFHVGIV-G--LGS---MGMGAARSCLR-AGLSTWGADLNPQACAN-LLAEGACGAAAS---A-REFAGVVDALVILVVN 74 (303)
T ss_dssp CCEEEEE-C--CSH---HHHHHHHHHHH-TTCEEEEECSCHHHHHH-HHHTTCSEEESS---S-TTTTTTCSEEEECCSS
T ss_pred CCeEEEE-C--CCH---HHHHHHHHHHH-CCCeEEEEECCHHHHHH-HHHcCCccccCC---H-HHHHhcCCEEEEECCC
Confidence 4688877 3 332 34444445545 67888888654311011 111111000011 1 2345789999999996
Q ss_pred cCCCchHHHHHHH---HhhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 040588 126 RFGSMASQMKAFF---DSTFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 126 y~g~~~~~~k~fl---d~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
. ..++..+ +.+.. .+ +++.+ ...++ .. ......+.+.+...|..+++.+
T Consensus 75 ~-----~~~~~v~~~~~~l~~-----~l~~g~iv---v~~st--~~-~~~~~~~~~~~~~~g~~~~~~p 127 (303)
T 3g0o_A 75 A-----AQVRQVLFGEDGVAH-----LMKPGSAV---MVSST--IS-SADAQEIAAALTALNLNMLDAP 127 (303)
T ss_dssp H-----HHHHHHHC--CCCGG-----GSCTTCEE---EECSC--CC-HHHHHHHHHHHHTTTCEEEECC
T ss_pred H-----HHHHHHHhChhhHHh-----hCCCCCEE---EecCC--CC-HHHHHHHHHHHHHcCCeEEeCC
Confidence 3 3455555 33322 23 34432 22222 12 2345566677777788777643
No 140
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=49.62 E-value=54 Score=24.87 Aligned_cols=41 Identities=10% Similarity=-0.084 Sum_probs=24.0
Q ss_pred hhccCeEEEecc----cc-CCC---chHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 113 LVHADGLLFGFP----TR-FGS---MASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 113 l~~aD~II~gsP----~y-~g~---~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
..++|+||+... -. ... ..+.+..|+.+... ++|+++.+++
T Consensus 64 ~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~-------~gk~i~aiC~ 112 (175)
T 3cne_A 64 EDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGE-------KGKMMIGHCA 112 (175)
T ss_dssp GGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred cccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHH-------CCCEEEEECH
Confidence 378999998643 11 111 34566777766532 5677665554
No 141
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=49.59 E-value=36 Score=28.24 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=40.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||||.||=.| | .|...++..+.+ .|.++.+++...... ....... ... ... .+.+.++|.||++.|.
T Consensus 11 mm~I~iIG~t--G---~mG~~la~~l~~-~g~~V~~~~r~~~~~-~~~~~~g--~~~---~~~-~~~~~~aDvVi~av~~ 77 (286)
T 3c24_A 11 PKTVAILGAG--G---KMGARITRKIHD-SAHHLAAIEIAPEGR-DRLQGMG--IPL---TDG-DGWIDEADVVVLALPD 77 (286)
T ss_dssp CCEEEEETTT--S---HHHHHHHHHHHH-SSSEEEEECCSHHHH-HHHHHTT--CCC---CCS-SGGGGTCSEEEECSCH
T ss_pred CCEEEEECCC--C---HHHHHHHHHHHh-CCCEEEEEECCHHHH-HHHHhcC--CCc---CCH-HHHhcCCCEEEEcCCc
Confidence 5688776421 3 344555555555 677777665432100 0111111 100 111 3456789999999997
Q ss_pred cCCCchHHHHHHHHhhh
Q 040588 126 RFGSMASQMKAFFDSTF 142 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~ 142 (252)
.. ++.+++.+.
T Consensus 78 ~~------~~~v~~~l~ 88 (286)
T 3c24_A 78 NI------IEKVAEDIV 88 (286)
T ss_dssp HH------HHHHHHHHG
T ss_pred hH------HHHHHHHHH
Confidence 53 455555543
No 142
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=49.29 E-value=38 Score=29.26 Aligned_cols=34 Identities=21% Similarity=0.042 Sum_probs=22.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+||+|+-+. .++..+++.+++ .|.++.+++...
T Consensus 1 M~~Ililg~g------~~g~~~~~a~~~-~G~~v~~~~~~~ 34 (380)
T 3ax6_A 1 MKKIGIIGGG------QLGKMMTLEAKK-MGFYVIVLDPTP 34 (380)
T ss_dssp CCEEEEECCS------HHHHHHHHHHHH-TTCEEEEEESST
T ss_pred CCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 5688888753 234455555666 688887777653
No 143
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=49.11 E-value=19 Score=30.94 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=29.0
Q ss_pred CCceEEEEEeCC--chhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 45 GQLKIFIIFYSM--YGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 45 ~~~kIlIIy~S~--~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
+|+|+++|+-.. .|...++++.+.+.+++ .|++++++.-.
T Consensus 23 ~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~-~g~~~~~~~t~ 64 (337)
T 2qv7_A 23 MRKRARIIYNPTSGKEQFKRELPDALIKLEK-AGYETSAYATE 64 (337)
T ss_dssp CCEEEEEEECTTSTTSCHHHHHHHHHHHHHH-TTEEEEEEECC
T ss_pred ccceEEEEECCCCCCCchHHHHHHHHHHHHH-cCCeEEEEEec
Confidence 355788888544 34577788899999988 78888776543
No 144
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=49.01 E-value=10 Score=32.50 Aligned_cols=64 Identities=14% Similarity=-0.008 Sum_probs=34.3
Q ss_pred CCCCceEEEE-EeCCchhHHHHHHHHHHhccccCCc-eEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEE
Q 040588 43 TTGQLKIFII-FYSMYGHVEILARRMKKGVDSIDGV-EGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLL 120 (252)
Q Consensus 43 ~~~~~kIlII-y~S~~GnT~~la~~i~~~l~~~~G~-ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II 120 (252)
|....+|++| +.|.. -+...+.+.+.+++ .|+ +++.+++.+.. +.+.+++ .+.+.++|+|+
T Consensus 53 gg~~~~I~~IptAs~~--~~~~~~~~~~~f~~-lG~~~v~~L~i~~r~-------------~a~~~~~-~~~l~~ad~I~ 115 (291)
T 3en0_A 53 GGNDAIIGIIPSASRE--PLLIGERYQTIFSD-MGVKELKVLDIRDRA-------------QGDDSGY-RLFVEQCTGIF 115 (291)
T ss_dssp TGGGCEEEEECTTCSS--HHHHHHHHHHHHHH-HCCSEEEECCCCSGG-------------GGGCHHH-HHHHHHCSEEE
T ss_pred CCCCCeEEEEeCCCCC--hHHHHHHHHHHHHH-cCCCeeEEEEecCcc-------------ccCCHHH-HHHHhcCCEEE
Confidence 3334577666 44532 22334444455554 466 56666664320 0011222 56789999999
Q ss_pred Eec
Q 040588 121 FGF 123 (252)
Q Consensus 121 ~gs 123 (252)
|+.
T Consensus 116 v~G 118 (291)
T 3en0_A 116 MTG 118 (291)
T ss_dssp ECC
T ss_pred ECC
Confidence 985
No 145
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=47.77 E-value=37 Score=26.75 Aligned_cols=42 Identities=12% Similarity=-0.032 Sum_probs=24.6
Q ss_pred ccCCCCCCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEE
Q 040588 37 QLTTTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVL 81 (252)
Q Consensus 37 ~~~~~~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l 81 (252)
+++|+......+|.||.+|.+- ..+++.+++.+++ .|+++++
T Consensus 3 e~~~~~~~~~P~V~IimGS~SD--~~v~~~a~~~l~~-~gi~~ev 44 (173)
T 4grd_A 3 EIQTAHTHSAPLVGVLMGSSSD--WDVMKHAVAILQE-FGVPYEA 44 (173)
T ss_dssp ---CTTCCSSCSEEEEESSGGG--HHHHHHHHHHHHH-TTCCEEE
T ss_pred ccccCCCCCCCeEEEEeCcHhH--HHHHHHHHHHHHH-cCCCEEE
Confidence 3445555566789999999632 2345555555665 6776554
No 146
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=47.42 E-value=57 Score=27.70 Aligned_cols=116 Identities=20% Similarity=0.123 Sum_probs=58.1
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCC-ceEEEEECCCCCCH---HHHhcc-cCCCCCCCCc-ccchhhhhccCe
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDG-VEGVLYRVPETLPA---EVLEQM-KVPQKGIEVP-VIAVDDLVHADG 118 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G-~ev~l~~l~~~~p~---~~~~~~-~~~~~~d~~~-~~~~~~l~~aD~ 118 (252)
++|||.||= .| .|...++..+.+ .| .+|.+++.....+. ...... .... .. .. .+.+.++|.
T Consensus 23 M~m~IgvIG---~G---~mG~~lA~~L~~-~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~----~~~s~-~e~~~~aDv 90 (317)
T 4ezb_A 23 MMTTIAFIG---FG---EAAQSIAGGLGG-RNAARLAAYDLRFNDPAASGALRARAAELGV----EPLDD-VAGIACADV 90 (317)
T ss_dssp SCCEEEEEC---CS---HHHHHHHHHHHT-TTCSEEEEECGGGGCTTTHHHHHHHHHHTTC----EEESS-GGGGGGCSE
T ss_pred cCCeEEEEC---cc---HHHHHHHHHHHH-cCCCeEEEEeCCCccccchHHHHHHHHHCCC----CCCCH-HHHHhcCCE
Confidence 456777764 33 344555566665 68 78888876531110 111100 0000 11 11 345678999
Q ss_pred EEEeccccCCCchHHHHHHHHhhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 040588 119 LLFGFPTRFGSMASQMKAFFDSTFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 119 II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
||+..|.... ...++.+.. .+ +++. +...++. . ..+...+.+.+...|..+++.
T Consensus 91 Vi~avp~~~~------~~~~~~i~~-----~l~~~~i---vv~~st~--~-p~~~~~~~~~l~~~g~~~~d~ 145 (317)
T 4ezb_A 91 VLSLVVGAAT------KAVAASAAP-----HLSDEAV---FIDLNSV--G-PDTKALAAGAIATGKGSFVEG 145 (317)
T ss_dssp EEECCCGGGH------HHHHHHHGG-----GCCTTCE---EEECCSC--C-HHHHHHHHHHHHTSSCEEEEE
T ss_pred EEEecCCHHH------HHHHHHHHh-----hcCCCCE---EEECCCC--C-HHHHHHHHHHHHHcCCeEEec
Confidence 9999998531 112233322 23 3332 2222221 2 234566777777778777654
No 147
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=47.15 E-value=80 Score=26.67 Aligned_cols=118 Identities=12% Similarity=0.023 Sum_probs=57.4
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.+|||.||=.-.-| ..+|..+ .+ .|.+|.+++...... ..+....... .... .+.+.++|.||+..|
T Consensus 30 ~~~~I~iIG~G~mG--~~~a~~l----~~-~G~~V~~~dr~~~~~-~~l~~~g~~~----~~~~-~e~~~~aDvVi~~vp 96 (320)
T 4dll_A 30 YARKITFLGTGSMG--LPMARRL----CE-AGYALQVWNRTPARA-ASLAALGATI----HEQA-RAAARDADIVVSMLE 96 (320)
T ss_dssp CCSEEEEECCTTTH--HHHHHHH----HH-TTCEEEEECSCHHHH-HHHHTTTCEE----ESSH-HHHHTTCSEEEECCS
T ss_pred CCCEEEEECccHHH--HHHHHHH----Hh-CCCeEEEEcCCHHHH-HHHHHCCCEe----eCCH-HHHHhcCCEEEEECC
Confidence 45788887322223 2244444 33 577888776542110 0111100000 0011 344678999999998
Q ss_pred ccCCCchHHHHHHHH--hhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 040588 125 TRFGSMASQMKAFFD--STFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 125 ~y~g~~~~~~k~fld--~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
. +..++..+. .+.. ...+++.+ ...++ .. ......+...+...|..+++.+
T Consensus 97 ~-----~~~~~~v~~~~~~~~----~l~~~~~v---i~~st--~~-~~~~~~~~~~~~~~g~~~~~~p 149 (320)
T 4dll_A 97 N-----GAVVQDVLFAQGVAA----AMKPGSLF---LDMAS--IT-PREARDHAARLGALGIAHLDTP 149 (320)
T ss_dssp S-----HHHHHHHHTTTCHHH----HCCTTCEE---EECSC--CC-HHHHHHHHHHHHHTTCEEEECC
T ss_pred C-----HHHHHHHHcchhHHh----hCCCCCEE---EecCC--CC-HHHHHHHHHHHHHcCCEEEeCC
Confidence 5 234555554 2221 11234432 22222 12 2345566677777888887654
No 148
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=47.07 E-value=45 Score=25.77 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=18.8
Q ss_pred hhhhccCeEEEeccccCCCch---HHHHHHHHhh
Q 040588 111 DDLVHADGLLFGFPTRFGSMA---SQMKAFFDST 141 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~---~~~k~fld~l 141 (252)
+.+...|.||........... ...+++++.+
T Consensus 57 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~ 90 (221)
T 3ew7_A 57 SDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVL 90 (221)
T ss_dssp HHHTTCSEEEECCCSSTTTTTSHHHHHHHHHHHH
T ss_pred hhhcCCCEEEECCcCCccccchHHHHHHHHHHHH
Confidence 557789999988766433221 3345566554
No 149
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=46.90 E-value=30 Score=28.14 Aligned_cols=86 Identities=13% Similarity=0.016 Sum_probs=41.9
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCC---cccchhhhhccCeEEE
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEV---PVIAVDDLVHADGLLF 121 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~---~~~~~~~l~~aD~II~ 121 (252)
+++||.|+-+- |.+..=+-...+.++...+.+++++..... + . .+. .++ ++....++.++|.||+
T Consensus 4 m~~~V~ill~~--gf~~~e~~~p~evl~~~~~~~v~~vs~~~~-~--V----~~~---~G~~v~~d~~l~~~~~~D~liv 71 (231)
T 3noq_A 4 MAVQIGFLLFP--EVQQLDLTGPHDVLASLPDVQVHLIWKEPG-P--V----VAS---SGLVLQATTSFADCPPLDVICI 71 (231)
T ss_dssp CCEEEEEECCT--TCCHHHHHHHHHHHTTSTTEEEEEEESSSE-E--E----ECT---TSCEEEECEETTTCCCCSEEEE
T ss_pred CcEEEEEEEeC--CCcHHHHHHHHHHHHcCCCCEEEEEECCCC-c--E----EcC---CCCEEecccChhHCCcCCEEEE
Confidence 34678777654 332222223444454324678888776431 1 0 000 011 1112345567999998
Q ss_pred ecc--ccCCCchHHHHHHHHhhh
Q 040588 122 GFP--TRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 122 gsP--~y~g~~~~~~k~fld~l~ 142 (252)
..- .....-.+.+..||.+..
T Consensus 72 pGG~g~~~~~~~~~l~~~lr~~~ 94 (231)
T 3noq_A 72 PGGTGVGALMEDPQALAFIRQQA 94 (231)
T ss_dssp CCSTTHHHHTTCHHHHHHHHHHH
T ss_pred CCCCChhhhccCHHHHHHHHHHH
Confidence 542 111223456777777653
No 150
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=46.84 E-value=7.5 Score=35.26 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=49.7
Q ss_pred CCCCCCCcCccccccCCCCCCCC-CCCCCCccccc---------cccCCCCCCCCceEEEEEeCCchhHHH----HHHHH
Q 040588 2 GKGGGCFPSKKKFAIDMPEQDPS-NPDGVSSNLDQ---------NQLTTTSTTGQLKIFIIFYSMYGHVEI----LARRM 67 (252)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~kIlIIy~S~~GnT~~----la~~i 67 (252)
|-||.|||..-++.+..-++.-. =-.....|-.| ..|. .-..+||+|+=.|-..||.- -+-.|
T Consensus 264 G~GG~C~pkD~~~L~~~a~~~~~li~~~~~iN~~~~~~v~~~~~~~l~---~~~~~~v~vlGlafK~~tdD~ReSpa~~i 340 (431)
T 3ojo_A 264 GVGGHCLAVDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIK---ALSGNKVTVFGLTYKGDVDDIRESPAFDI 340 (431)
T ss_dssp CCCCCCBCSCC---------CCHHHHHHHHHHHTHHHHHHHHHHHHHH---HSSCCEEEEECCCSSTTSCCCTTCHHHHH
T ss_pred CccccchhhhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhh---hcCCCEEEEEeeeeCCCCcchhcChHHHH
Confidence 67999999888887776443210 00000112111 0121 11234777766664443322 24455
Q ss_pred HHhccccC-CceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 68 KKGVDSID-GVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 68 ~~~l~~~~-G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.+.|.+ . |++|.+++-.-.. . -..... .+.+.+||+||+.+.
T Consensus 341 ~~~L~~-~~g~~V~~~DP~~~~-~------------~~~~~~-~~~~~~ad~vvi~t~ 383 (431)
T 3ojo_A 341 YELLNQ-EPDIEVCAYDPHVEL-D------------FVEHDM-SHAVKDASLVLILSD 383 (431)
T ss_dssp HHHHHH-STTCEEEEECSSCCC-T------------TBCSTT-HHHHTTCSEEEECSC
T ss_pred HHHHHh-hcCCEEEEECCCccc-c------------cccCCH-HHHHhCCCEEEEecC
Confidence 666666 6 8888888743210 0 001111 456789999999986
No 151
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=45.18 E-value=55 Score=25.61 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=30.6
Q ss_pred CceEEEEEeCCch-hHHHHHHHHHHhccccCCc---eEEEEECCCC
Q 040588 46 QLKIFIIFYSMYG-HVEILARRMKKGVDSIDGV---EGVLYRVPET 87 (252)
Q Consensus 46 ~~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~---ev~l~~l~~~ 87 (252)
..||.||...-+- -|+.|.+...+.+.+ .|+ +++++.+.-.
T Consensus 16 ~~ri~IV~arfn~~I~~~Ll~gA~~~L~~-~Gv~~~~i~v~~VPGa 60 (168)
T 1ejb_A 16 KIRVGIIHARWNRVIIDALVKGAIERMAS-LGVEENNIIIETVPGS 60 (168)
T ss_dssp TCCEEEEECCTTHHHHHHHHHHHHHHHHH-TTCCGGGEEEEECSSG
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcH
Confidence 3689998866443 488899888888887 675 5778888754
No 152
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=45.15 E-value=60 Score=25.59 Aligned_cols=61 Identities=13% Similarity=0.216 Sum_probs=36.2
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.+|||.||= .|+ |...++..+.+ .|.++.+++... +.+.++|.||++.|
T Consensus 18 ~~~~I~iiG---~G~---mG~~la~~l~~-~g~~V~~~~~~~------------------------~~~~~aD~vi~av~ 66 (209)
T 2raf_A 18 QGMEITIFG---KGN---MGQAIGHNFEI-AGHEVTYYGSKD------------------------QATTLGEIVIMAVP 66 (209)
T ss_dssp --CEEEEEC---CSH---HHHHHHHHHHH-TTCEEEEECTTC------------------------CCSSCCSEEEECSC
T ss_pred CCCEEEEEC---CCH---HHHHHHHHHHH-CCCEEEEEcCCH------------------------HHhccCCEEEEcCC
Confidence 356777763 342 44445555544 577777665321 14568999999999
Q ss_pred ccCCCchHHHHHHHHhhh
Q 040588 125 TRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~l~ 142 (252)
. ..++.+++.+.
T Consensus 67 ~------~~~~~v~~~l~ 78 (209)
T 2raf_A 67 Y------PALAALAKQYA 78 (209)
T ss_dssp H------HHHHHHHHHTH
T ss_pred c------HHHHHHHHHHH
Confidence 4 34566666654
No 153
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=45.15 E-value=1.3e+02 Score=24.65 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=33.9
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHH---hhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEE
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFD---STFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVY 186 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld---~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~v 186 (252)
+.+.++|.||+..|.. ..++..+. .+.. .+ +++. +.+..+ +. ......+.+.+...|..+
T Consensus 54 ~~~~~~D~vi~~vp~~-----~~~~~v~~~~~~l~~-----~l~~~~~---vv~~s~--~~-~~~~~~l~~~~~~~g~~~ 117 (295)
T 1yb4_A 54 QVTEFADIIFIMVPDT-----PQVEDVLFGEHGCAK-----TSLQGKT---IVDMSS--IS-PIETKRFAQRVNEMGADY 117 (295)
T ss_dssp HHHHTCSEEEECCSSH-----HHHHHHHHSTTSSTT-----SCCTTEE---EEECSC--CC-HHHHHHHHHHHHTTTEEE
T ss_pred HHHhcCCEEEEECCCH-----HHHHHHHhCchhHhh-----cCCCCCE---EEECCC--CC-HHHHHHHHHHHHHcCCeE
Confidence 3467899999999863 23566665 3321 22 2332 222222 22 223455666666667776
Q ss_pred ecC
Q 040588 187 VPI 189 (252)
Q Consensus 187 v~~ 189 (252)
++.
T Consensus 118 ~~~ 120 (295)
T 1yb4_A 118 LDA 120 (295)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 154
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=45.05 E-value=16 Score=30.83 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=28.5
Q ss_pred ceEEEEEeC--CchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 47 LKIFIIFYS--MYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 47 ~kIlIIy~S--~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|||+++..+ +.|-.+..+..+++.+.+ .|.+|.++...
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~ 40 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAA-RGHHVRVYTQS 40 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHH-TTCCEEEEESE
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHh-CCCeEEEEecC
Confidence 689988644 456667777788888887 79999988764
No 155
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=44.52 E-value=53 Score=26.56 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=12.9
Q ss_pred hhhhccCeEEEecccc
Q 040588 111 DDLVHADGLLFGFPTR 126 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y 126 (252)
+.+.++|.||++.|.+
T Consensus 54 ~~~~~~D~vi~~v~~~ 69 (262)
T 2rcy_A 54 ELARHCDIIVCAVKPD 69 (262)
T ss_dssp HHHHHCSEEEECSCTT
T ss_pred HHHhcCCEEEEEeCHH
Confidence 4467899999999964
No 156
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=44.17 E-value=26 Score=29.04 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=27.9
Q ss_pred CceEEEEEeCCch---hHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYG---HVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~G---nT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+|||+|+++.... -+-..++.+++.+++ .|.++..++..+
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~-~G~~v~~~~~~~ 44 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLRE-GGIDAYPVDPKE 44 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTT
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHH-CCCeEEEEecCc
Confidence 4789999976432 222355677777777 799988888764
No 157
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=44.07 E-value=42 Score=25.98 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=32.4
Q ss_pred ceEEEEEeCCch-hHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 47 LKIFIIFYSMYG-HVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 47 ~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
.||+||...-+- -|+.|.+...+.+.+ .|.+++++.++-.
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~-~G~~i~v~~VPGa 53 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDE-AGATYDVVTVPGA 53 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHH-TTCEEEEEEESSG
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCeEEEECCcH
Confidence 589999876554 488999999999988 7888899998764
No 158
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=43.92 E-value=30 Score=30.45 Aligned_cols=39 Identities=5% Similarity=-0.108 Sum_probs=22.7
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
..++||+|+-+ .|....=+-...+.+++ .|++++++...
T Consensus 203 ~~~~ki~ill~--dg~~~~e~~~~~~~l~~-ag~~v~~vs~~ 241 (396)
T 3uk7_A 203 GANKRILFLCG--DYMEDYEVKVPFQSLQA-LGCQVDAVCPE 241 (396)
T ss_dssp CCCCEEEEECC--TTEEHHHHHHHHHHHHH-HTCEEEEECTT
T ss_pred hccceEEEEec--CCCcchhHHHHHHHHHH-CCCEEEEECCC
Confidence 34567887765 34333333344555555 67888887654
No 159
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=43.33 E-value=21 Score=31.17 Aligned_cols=40 Identities=13% Similarity=-0.016 Sum_probs=26.8
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
+.||||+++-+...|+..-+. .+++.+.+ .|.+|.++.-.
T Consensus 10 m~~~~Il~~~~~~~GHv~p~l-~la~~L~~-~Gh~V~~~~~~ 49 (424)
T 2iya_A 10 VTPRHISFFNIPGHGHVNPSL-GIVQELVA-RGHRVSYAITD 49 (424)
T ss_dssp -CCCEEEEECCSCHHHHHHHH-HHHHHHHH-TTCEEEEEECG
T ss_pred cccceEEEEeCCCCcccchHH-HHHHHHHH-CCCeEEEEeCH
Confidence 457899987555578876555 45556666 78888887644
No 160
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=42.80 E-value=34 Score=28.79 Aligned_cols=38 Identities=5% Similarity=0.044 Sum_probs=27.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|||+++..+. |.....+..+++.+.+ .|.+|.++...+
T Consensus 7 mkIl~~~~~~-gG~~~~~~~la~~L~~-~G~~V~v~~~~~ 44 (364)
T 1f0k_A 7 KRLMVMAGGT-GGHVFPGLAVAHHLMA-QGWQVRWLGTAD 44 (364)
T ss_dssp CEEEEECCSS-HHHHHHHHHHHHHHHT-TTCEEEEEECTT
T ss_pred cEEEEEeCCC-ccchhHHHHHHHHHHH-cCCEEEEEecCC
Confidence 7999886443 4444556677788877 789999887654
No 161
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=42.17 E-value=99 Score=25.81 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=55.8
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchh------hhhccCe
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVD------DLVHADG 118 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~------~l~~aD~ 118 (252)
++.||-||=--.-| |..+++.++++...+.++++.++--.....++... +. .. +-.+-|.
T Consensus 2 mvvKiGiiKlGNig-ts~~idl~LDErAdRedI~vrv~gsGaKm~pe~~~------------~~-~~~~~~~~~~~~pDf 67 (283)
T 1qv9_A 2 TVAKAIFIKCGNLG-TSMMMDMLLDERADREDVEFRVVGTSVKMDPECVE------------AA-VEMALDIAEDFEPDF 67 (283)
T ss_dssp CCEEEEEEECSCCH-HHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHH------------HH-HHHHHHHHHHHCCSE
T ss_pred eeEEEEEEEecccc-hHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHH------------HH-HHHhhhhhhhcCCCE
Confidence 34567666522222 66788998888776567888777765443222211 00 11 2247899
Q ss_pred EEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEee
Q 040588 119 LLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVST 161 (252)
Q Consensus 119 II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~ 161 (252)
+|+.||- ...|++-+.- .+| .-+|.++.+++-.
T Consensus 68 vI~isPN--~a~PGP~~AR-----E~l---~~~~iP~IvI~D~ 100 (283)
T 1qv9_A 68 IVYGGPN--PAAPGPSKAR-----EML---ADSEYPAVIIGDA 100 (283)
T ss_dssp EEEECSC--TTSHHHHHHH-----HHH---HTSSSCEEEEEEG
T ss_pred EEEECCC--CCCCCchHHH-----HHH---HhCCCCEEEEcCC
Confidence 9999994 7777775531 111 1278888777763
No 162
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=41.96 E-value=31 Score=27.02 Aligned_cols=46 Identities=26% Similarity=0.159 Sum_probs=28.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCC-----ceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDG-----VEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G-----~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
|||+||-+ ..||...+++++.+ .| ++++++.-. ++ .++|+|||
T Consensus 1 m~I~iid~-~~g~~~s~~~~l~~-----~G~~~~~~~~~~~~~~-------------------------~~-~~~dglil 48 (201)
T 1gpw_B 1 MRIGIISV-GPGNIMNLYRGVKR-----ASENFEDVSIELVESP-------------------------RN-DLYDLLFI 48 (201)
T ss_dssp CEEEEECC-SSSCCHHHHHHHHH-----HSTTBSSCEEEEECSC-------------------------CS-SCCSEEEE
T ss_pred CEEEEEec-CCchHHHHHHHHHH-----cCCCCCceEEEEECCC-------------------------cc-cCCCEEEE
Confidence 68888843 34676666655543 34 666665421 12 67899999
Q ss_pred ecc
Q 040588 122 GFP 124 (252)
Q Consensus 122 gsP 124 (252)
..|
T Consensus 49 pG~ 51 (201)
T 1gpw_B 49 PGV 51 (201)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 163
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=41.54 E-value=1.3e+02 Score=23.61 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=35.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccC-CCCCCCC-cccchhhhhccCeEEEec
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKV-PQKGIEV-PVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~-~~~~d~~-~~~~~~~l~~aD~II~gs 123 (252)
.|+|+|. + -|..+..++++.+.+ .|.+|.++.-....... .....+ ..-..|+ ..+ .+.+...|.||...
T Consensus 21 ~~~ilVt-G----atG~iG~~l~~~L~~-~G~~V~~~~R~~~~~~~-~~~~~~~~~~~~Dl~~~~-~~~~~~~D~vi~~a 92 (236)
T 3e8x_A 21 GMRVLVV-G----ANGKVARYLLSELKN-KGHEPVAMVRNEEQGPE-LRERGASDIVVANLEEDF-SHAFASIDAVVFAA 92 (236)
T ss_dssp CCEEEEE-T----TTSHHHHHHHHHHHH-TTCEEEEEESSGGGHHH-HHHTTCSEEEECCTTSCC-GGGGTTCSEEEECC
T ss_pred CCeEEEE-C----CCChHHHHHHHHHHh-CCCeEEEEECChHHHHH-HHhCCCceEEEcccHHHH-HHHHcCCCEEEECC
Confidence 4566664 3 333444555555555 57777776644221111 111111 1000111 222 45677899999887
Q ss_pred cccC
Q 040588 124 PTRF 127 (252)
Q Consensus 124 P~y~ 127 (252)
....
T Consensus 93 g~~~ 96 (236)
T 3e8x_A 93 GSGP 96 (236)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 7543
No 164
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=41.25 E-value=41 Score=26.96 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=57.5
Q ss_pred cCCCCCCCCceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECC-CC-CCHHHHhc----ccCCCCCCCCcccch
Q 040588 38 LTTTSTTGQLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVP-ET-LPAEVLEQ----MKVPQKGIEVPVIAV 110 (252)
Q Consensus 38 ~~~~~~~~~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~-~~-~p~~~~~~----~~~~~~~d~~~~~~~ 110 (252)
|.......|.++.+||+++ .|.|..|.+++..... .+..+-++.-. |. ........ ..+. ......++ .
T Consensus 11 ~~~~~~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~--~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~-~~~~~~d~-~ 86 (195)
T 1w4r_A 11 LVPRGSKTRGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKDTRYSSSFCTHDRNTMEAL-PACLLRDV-A 86 (195)
T ss_dssp --------CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEETTCCCGGGSCCHHHHHHSEEE-EESSGGGG-H
T ss_pred ccccCCCCceEEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEccccCccchhhhhhccCCcccce-ecCCHHHH-H
Confidence 4444455577899999998 6999889999887765 35667776633 11 00000000 0111 01122223 3
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEee
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVST 161 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~ 161 (252)
+...++|.|+|-=--++ .. +..|+..+. -.||++.+++--
T Consensus 87 ~~~~~~DvIlIDEaQFf---k~-~ve~~~~L~-------~~gk~VI~~GL~ 126 (195)
T 1w4r_A 87 QEALGVAVIGIDEGQFF---PD-IVEFCEAMA-------NAGKTVIVAALD 126 (195)
T ss_dssp HHHHTCSEEEESSGGGC---TT-HHHHHHHHH-------HTTCEEEEEEES
T ss_pred HhccCCCEEEEEchhhh---HH-HHHHHHHHH-------HCCCeEEEEecc
Confidence 44567888888755554 22 555666553 267887766653
No 165
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=41.11 E-value=28 Score=27.02 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=30.5
Q ss_pred CCceEEEEEeCCch-hHHHHHHHHHHhccccCCc---eEEEEECCCC
Q 040588 45 GQLKIFIIFYSMYG-HVEILARRMKKGVDSIDGV---EGVLYRVPET 87 (252)
Q Consensus 45 ~~~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~---ev~l~~l~~~ 87 (252)
...||.||...-+- -|+.|.+...+.+++ .|+ +++++.++-.
T Consensus 9 ~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~-~gv~~~~i~v~~VPGa 54 (158)
T 1di0_A 9 TSFKIAFIQARWHADIVDEARKSFVAELAA-KTGGSVEVEIFDVPGA 54 (158)
T ss_dssp CCEEEEEEEECTTHHHHHHHHHHHHHHHHH-HHTTSEEEEEEEESSG
T ss_pred CCCEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcH
Confidence 35689999876544 488888888888876 564 4678887754
No 166
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=41.05 E-value=59 Score=21.41 Aligned_cols=36 Identities=11% Similarity=0.005 Sum_probs=21.8
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
||+-+++|+++ .+.++++...+.+ .|++++.+++.+
T Consensus 4 ~m~~v~ly~~~~C~~C~~~~~~L~~-----~~i~~~~~di~~ 40 (92)
T 2khp_A 4 SMVDVIIYTRPGCPYCARAKALLAR-----KGAEFNEIDASA 40 (92)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHHHH-----TTCCCEEEESTT
T ss_pred CcccEEEEECCCChhHHHHHHHHHH-----cCCCcEEEECCC
Confidence 34445556665 5777765554432 466778888764
No 167
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=40.84 E-value=27 Score=30.95 Aligned_cols=38 Identities=8% Similarity=0.103 Sum_probs=30.7
Q ss_pred ceEEEEEeC--C---chhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 47 LKIFIIFYS--M---YGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 47 ~kIlIIy~S--~---~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|||++|..+ + .|-++..+..+++.+.+ .|.+|+++...
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~-~G~~V~vi~~~ 43 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEA-HGVRTRTLIPG 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHT-TTCEEEEEEEC
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHH-cCCeEEEEecc
Confidence 689988653 2 47788888899999988 89999998764
No 168
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=40.63 E-value=44 Score=22.54 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=21.8
Q ss_pred CceEEEEEeCCchhHH-----HHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYGHVE-----ILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~-----~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|++|.|...|..+.++ .-|+.+++. .|++.+.+++..
T Consensus 1 M~~v~ly~~~~C~~c~~~~~~~~ak~~L~~----~~i~~~~~di~~ 42 (93)
T 1t1v_A 1 MSGLRVYSTSVTGSREIKSQQSEVTRILDG----KRIQYQLVDISQ 42 (93)
T ss_dssp CCCEEEEECSSCSCHHHHHHHHHHHHHHHH----TTCCCEEEETTS
T ss_pred CCCEEEEEcCCCCCchhhHHHHHHHHHHHH----CCCceEEEECCC
Confidence 4455554444456663 455555543 577888888864
No 169
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=40.54 E-value=43 Score=28.58 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=29.4
Q ss_pred CceEEEEEeCCch---hHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYG---HVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~G---nT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+|||+||++.... -+-.-+..+.+.+++ .|.++..+++..
T Consensus 3 ~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (343)
T 1e4e_A 3 RIKVAILFGGCSEEHDVSVKSAIEIAANINK-EKYEPLYIGITK 45 (343)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHhhh-cCCEEEEEEEcC
Confidence 5789999986432 233356778888888 899998888754
No 170
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=40.12 E-value=40 Score=28.13 Aligned_cols=70 Identities=16% Similarity=0.091 Sum_probs=35.9
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCc---eEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGV---EGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~---ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
.+|||.||= .|+ |...++.++.+ .|. ++.+++................. .... .+.+.++|.||+
T Consensus 2 ~~~~I~iIG---~G~---mG~aia~~l~~-~g~~~~~V~v~dr~~~~~~~l~~~~gi~~----~~~~-~~~~~~aDvVil 69 (280)
T 3tri_A 2 NTSNITFIG---GGN---MARNIVVGLIA-NGYDPNRICVTNRSLDKLDFFKEKCGVHT----TQDN-RQGALNADVVVL 69 (280)
T ss_dssp CCSCEEEES---CSH---HHHHHHHHHHH-TTCCGGGEEEECSSSHHHHHHHHTTCCEE----ESCH-HHHHSSCSEEEE
T ss_pred CCCEEEEEc---ccH---HHHHHHHHHHH-CCCCCCeEEEEeCCHHHHHHHHHHcCCEE----eCCh-HHHHhcCCeEEE
Confidence 357887773 243 55555566555 565 67777654321011111101100 0011 355778999999
Q ss_pred ecccc
Q 040588 122 GFPTR 126 (252)
Q Consensus 122 gsP~y 126 (252)
+.|.+
T Consensus 70 av~p~ 74 (280)
T 3tri_A 70 AVKPH 74 (280)
T ss_dssp CSCGG
T ss_pred EeCHH
Confidence 99863
No 171
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=40.11 E-value=27 Score=29.83 Aligned_cols=39 Identities=15% Similarity=0.028 Sum_probs=27.9
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
+.|+||+++-....|+...+. .+++.+.+ .|.+|.++.-
T Consensus 2 m~M~~il~~~~~~~Ghv~~~~-~La~~L~~-~GheV~v~~~ 40 (402)
T 3ia7_A 2 MRQRHILFANVQGHGHVYPSL-GLVSELAR-RGHRITYVTT 40 (402)
T ss_dssp CCCCEEEEECCSSHHHHHHHH-HHHHHHHH-TTCEEEEEEC
T ss_pred CCCCEEEEEeCCCCcccccHH-HHHHHHHh-CCCEEEEEcC
Confidence 346799887666678876555 56677777 7999988763
No 172
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=39.76 E-value=28 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=23.4
Q ss_pred CceEEEEEeC-Cch-hHHHHHHHHHHhccccC-Cc-eEEEEECCC
Q 040588 46 QLKIFIIFYS-MYG-HVEILARRMKKGVDSID-GV-EGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S-~~G-nT~~la~~i~~~l~~~~-G~-ev~l~~l~~ 86 (252)
|||++||..| +++ .....|-.++..+.+ . |. ++.++-..+
T Consensus 1 M~k~~ii~~~~p~~~~~~~~al~~a~~~~~-~~g~~~v~vff~~d 44 (117)
T 1jx7_A 1 MQKIVIVANGAPYGSESLFNSLRLAIALRE-QESNLDLRLFLMSD 44 (117)
T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHH-HCTTCEEEEEECGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHh-cCCCccEEEEEEch
Confidence 5688877766 454 233333344444444 4 76 888887765
No 173
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=39.76 E-value=26 Score=31.09 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=30.6
Q ss_pred ceEEEEEeC--C---chhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 47 LKIFIIFYS--M---YGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 47 ~kIlIIy~S--~---~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|||++|..+ + .|-.+..+..+++.+.+ .|.+|+++...
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~-~G~~V~vi~~~ 43 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIA-DGVDARVLLPA 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 789988754 2 47788888899999988 89999998764
No 174
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=39.76 E-value=28 Score=31.08 Aligned_cols=40 Identities=8% Similarity=0.045 Sum_probs=31.0
Q ss_pred CceEEEEEeC--------------CchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYS--------------MYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S--------------~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+|||++|..+ ..|-++..+..+++.+.+ .|.+|+++....
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~-~G~~V~v~~~~~ 60 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAE-MGVQVDIITRRI 60 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHH-TTCEEEEEEECC
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHh-cCCeEEEEeCCC
Confidence 4799998753 246677888889999988 799999887643
No 175
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=39.60 E-value=45 Score=27.87 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=30.5
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.++|.+||.+...|.....+.+.+.+.+ .|.++....+..
T Consensus 140 ~k~vgvi~~~~~~~s~~~~~~~~~~~~~-~g~~~v~~~~~~ 179 (302)
T 3lkv_A 140 VKSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEATALK 179 (302)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHH-cCCEEEEEecCC
Confidence 4689999988777777788888888877 787776666554
No 176
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=39.41 E-value=79 Score=27.51 Aligned_cols=116 Identities=17% Similarity=0.241 Sum_probs=58.3
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhcc---CeEEEe
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHA---DGLLFG 122 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~a---D~II~g 122 (252)
+|||.||= .|+ |...++..+.+ .|.+|.+++....... .+....... ..+ . .+.+.++ |.||+.
T Consensus 22 ~mkIgiIG---lG~---mG~~~A~~L~~-~G~~V~v~dr~~~~~~-~l~~~g~~~-~~s---~-~e~~~~a~~~DvVi~~ 88 (358)
T 4e21_A 22 SMQIGMIG---LGR---MGADMVRRLRK-GGHECVVYDLNVNAVQ-ALEREGIAG-ARS---I-EEFCAKLVKPRVVWLM 88 (358)
T ss_dssp CCEEEEEC---CSH---HHHHHHHHHHH-TTCEEEEECSCHHHHH-HHHTTTCBC-CSS---H-HHHHHHSCSSCEEEEC
T ss_pred CCEEEEEC---chH---HHHHHHHHHHh-CCCEEEEEeCCHHHHH-HHHHCCCEE-eCC---H-HHHHhcCCCCCEEEEe
Confidence 36777763 342 44444455545 6778888775431100 111111000 011 1 2334566 999999
Q ss_pred ccccCCCchHHHHHHHHhhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCc
Q 040588 123 FPTRFGSMASQMKAFFDSTFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGY 191 (252)
Q Consensus 123 sP~y~g~~~~~~k~fld~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~ 191 (252)
.|.. . +...++.+.. .+ +|+. +...++. ... ....+.+.+...|+.+++.+.
T Consensus 89 vp~~--~----v~~vl~~l~~-----~l~~g~i---iId~st~--~~~-~~~~~~~~l~~~g~~~vdapV 141 (358)
T 4e21_A 89 VPAA--V----VDSMLQRMTP-----LLAANDI---VIDGGNS--HYQ-DDIRRADQMRAQGITYVDVGT 141 (358)
T ss_dssp SCGG--G----HHHHHHHHGG-----GCCTTCE---EEECSSC--CHH-HHHHHHHHHHTTTCEEEEEEE
T ss_pred CCHH--H----HHHHHHHHHh-----hCCCCCE---EEeCCCC--ChH-HHHHHHHHHHHCCCEEEeCCC
Confidence 9986 3 4455555432 23 2332 3333321 222 345566777778888876543
No 177
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=38.94 E-value=44 Score=25.02 Aligned_cols=40 Identities=20% Similarity=0.113 Sum_probs=26.3
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
++|++||..|..-..-..+=.++..+.+ .|.+|+++-..+
T Consensus 7 ~~kl~II~~sg~~d~~~~a~~lA~~Aaa-~g~eV~iF~t~~ 46 (144)
T 2qs7_A 7 KKKLSIIVFSGTIDKLMPVGILTSGAAA-SGYEVNLFFTFW 46 (144)
T ss_dssp CCEEEEEECCCSHHHHHHHHHHHHHHHH-TTCEEEEEECHH
T ss_pred cCCEEEEEEcCCHHHHHHHHHHHHHHHH-cCCcEEEEEehH
Confidence 5689999988754333344445555555 688999887653
No 178
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=38.93 E-value=81 Score=24.32 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=31.5
Q ss_pred ceEEEEEeCCch-hHHHHHHHHHHhccccCC-c---eEEEEECCCC
Q 040588 47 LKIFIIFYSMYG-HVEILARRMKKGVDSIDG-V---EGVLYRVPET 87 (252)
Q Consensus 47 ~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G-~---ev~l~~l~~~ 87 (252)
.||.||...-+- -|+.|.+...+.+.+ .| + +++++.++-.
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~-~G~v~~~~i~v~~VPGa 57 (156)
T 3nq4_A 13 ARVAITIARFNQFINDSLLDGAVDALTR-IGQVKDDNITVVWVPGA 57 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHH-TTCCCTTSEEEEEESST
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHH-cCCCcccceEEEEcCcH
Confidence 589999876554 488899988888887 77 4 6888888865
No 179
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=38.81 E-value=42 Score=26.22 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=20.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
||||||. |-|-.+...+++.+.+ .|.+|..+.-
T Consensus 4 m~~ilIt-----GatG~iG~~l~~~L~~-~g~~V~~~~r 36 (227)
T 3dhn_A 4 VKKIVLI-----GASGFVGSALLNEALN-RGFEVTAVVR 36 (227)
T ss_dssp CCEEEEE-----TCCHHHHHHHHHHHHT-TTCEEEEECS
T ss_pred CCEEEEE-----cCCchHHHHHHHHHHH-CCCEEEEEEc
Confidence 5677764 4445566667777766 6777666543
No 180
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=38.74 E-value=17 Score=31.40 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=27.0
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
..+|||+++..+..|+...++ .+++.+.+ .|.+|.++.-
T Consensus 13 ~~~MrIl~~~~~~~gh~~~~~-~La~~L~~-~GheV~v~~~ 51 (398)
T 4fzr_A 13 GSHMRILVIAGCSEGFVMPLV-PLSWALRA-AGHEVLVAAS 51 (398)
T ss_dssp --CCEEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEEE
T ss_pred CCceEEEEEcCCCcchHHHHH-HHHHHHHH-CCCEEEEEcC
Confidence 346899998777677755444 56677777 7999988764
No 181
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=38.68 E-value=30 Score=22.37 Aligned_cols=39 Identities=10% Similarity=-0.100 Sum_probs=22.0
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|+|++++.+.-+.++++...+.+-..+..++++..+++.
T Consensus 1 m~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~ 39 (85)
T 1ego_A 1 MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIR 39 (85)
T ss_dssp CEEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 466554444567887776655543322135666666664
No 182
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=38.49 E-value=18 Score=31.26 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=28.2
Q ss_pred CCCCCC-CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 40 TTSTTG-QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 40 ~~~~~~-~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
.+.++. +|||+++..+..|+...++ .+++.+++ .|.+|.++.-
T Consensus 13 ~~~~~~~~MrIl~~~~~~~Ghv~~~~-~La~~L~~-~GheV~v~~~ 56 (398)
T 3oti_A 13 SGHIEGRHMRVLFVSSPGIGHLFPLI-QLAWGFRT-AGHDVLIAVA 56 (398)
T ss_dssp ------CCCEEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEES
T ss_pred ccchhhhcCEEEEEcCCCcchHhHHH-HHHHHHHH-CCCEEEEecc
Confidence 333333 6899998877677765544 56677777 7999998876
No 183
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=38.26 E-value=58 Score=30.33 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=23.7
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 43 TTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|....+|+||-+- .++|..+++++.+ .|+.++++...
T Consensus 4 ~~~~~~IlilD~G-s~~~~~I~r~lre-----~Gv~~eiv~~~ 40 (556)
T 3uow_A 4 GEEYDKILVLNFG-SQYFHLIVKRLNN-----IKIFSETKDYG 40 (556)
T ss_dssp ---CCEEEEEESS-CTTHHHHHHHHHH-----TTCCEEEEETT
T ss_pred CCCCCEEEEEECC-CccHHHHHHHHHH-----CCCeEEEEECC
Confidence 4556789888532 4578878777654 47778888754
No 184
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=38.18 E-value=1e+02 Score=21.69 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=55.0
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|||+|+.-+ |...+.+.|.+.++. .|.+|+ ++.+.. +... .+.. ..+-.+...|++.|-
T Consensus 1 mkililint---nndelikkikkeven-qgyqvr--dvndsd--elkk---------emkk--laeeknfekiliisn-- 59 (134)
T 2lci_A 1 MKILILINT---NNDELIKKIKKEVEN-QGYQVR--DVNDSD--ELKK---------EMKK--LAEEKNFEKILIISN-- 59 (134)
T ss_dssp CCCEEEEEC---SCHHHHHHHHHHTTT-TTCEEE--EECSHH--HHHH---------HHHH--HHHCCSCCCEEEEES--
T ss_pred CeEEEEEcC---CcHHHHHHHHHHHHc-cCeeee--ecCchH--HHHH---------HHHH--HHhhcCcceEEEEcC--
Confidence 578887743 445688889999887 776654 444321 0000 0000 112234455555442
Q ss_pred CCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEE
Q 040588 127 FGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVY 186 (252)
Q Consensus 127 ~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~v 186 (252)
--..+|.+++.+.. +.-|++.+.-. ..+..+.++.+.+...|+.+
T Consensus 60 ---dkqllkemlelisk------lgykvflllqd------qdeneleefkrkiesqgyev 104 (134)
T 2lci_A 60 ---DKQLLKEMLELISK------LGYKVFLLLQD------QDENELEEFKRKIESQGYEV 104 (134)
T ss_dssp ---CHHHHHHHHHHHHH------HTCCEEEEEEC------SCHHHHHHHHHHHHTTTCEE
T ss_pred ---cHHHHHHHHHHHHH------hCceeEEEeec------CchhHHHHHHHHHHhCCeee
Confidence 23456666666542 33354433332 23456788888777766655
No 185
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=38.02 E-value=31 Score=25.34 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=25.6
Q ss_pred EEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 50 FIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 50 lIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+.||.+.......+.+.|..|++| +|+..++....+
T Consensus 8 I~i~~~~~~~~~~~l~~vl~GIEE-EGip~~v~~~~~ 43 (117)
T 1nbw_B 8 VRLFYDPRGHHAGAINELCWGLEE-QGVPCQTITYDG 43 (117)
T ss_dssp EEEEECTTSCCHHHHHHHHHHHHH-TTCCEEEEECTT
T ss_pred EEEEeCCCCCCHHHHHHHHhhhhh-cCCCeEEEEeCC
Confidence 344554444334577999999999 999988877654
No 186
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=37.92 E-value=1.7e+02 Score=24.17 Aligned_cols=114 Identities=17% Similarity=0.088 Sum_probs=59.3
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|||.||= . |+ |...++..+.+ .|.+|.+++............ .... .+ +.+++.++|.||+..|..
T Consensus 16 ~~I~vIG-~--G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~~~~~-g~~~-~~-----~~~~~~~aDvvi~~vp~~ 81 (296)
T 3qha_A 16 LKLGYIG-L--GN---MGAPMATRMTE-WPGGVTVYDIRIEAMTPLAEA-GATL-AD-----SVADVAAADLIHITVLDD 81 (296)
T ss_dssp CCEEEEC-C--ST---THHHHHHHHTT-STTCEEEECSSTTTSHHHHHT-TCEE-CS-----SHHHHTTSSEEEECCSSH
T ss_pred CeEEEEC-c--CH---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHC-CCEE-cC-----CHHHHHhCCEEEEECCCh
Confidence 5777763 3 22 33344455555 688898888765322211111 0000 00 133433399999999863
Q ss_pred CCCchHHHHHHHHhhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 040588 127 FGSMASQMKAFFDSTFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 127 ~g~~~~~~k~fld~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
..++..++.+.. .+ +++.+ ...++ .. ......+.+.+...|..+++.+
T Consensus 82 -----~~~~~v~~~l~~-----~l~~g~iv---v~~st--~~-~~~~~~~~~~~~~~g~~~~~~p 130 (296)
T 3qha_A 82 -----AQVREVVGELAG-----HAKPGTVI---AIHST--IS-DTTAVELARDLKARDIHIVDAP 130 (296)
T ss_dssp -----HHHHHHHHHHHT-----TCCTTCEE---EECSC--CC-HHHHHHHHHHHGGGTCEEEECC
T ss_pred -----HHHHHHHHHHHH-----hcCCCCEE---EEeCC--CC-HHHHHHHHHHHHHcCCEEEeCC
Confidence 346666655542 23 33332 22222 12 2345567777777888887654
No 187
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=37.75 E-value=49 Score=28.62 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=32.2
Q ss_pred CCceEEEEEeCCc---hhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYSMY---GHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S~~---GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.+|||+|+|+..+ --+-.=+..+.+.+.+ .|.++..+++..
T Consensus 2 ~~~~v~vl~GG~S~E~evSl~S~~~v~~al~~-~~~~v~~i~i~~ 45 (364)
T 3i12_A 2 AKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-TRFDVVLLGIDK 45 (364)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CccEEEEEeccCCCCccchHHHHHHHHHHHhh-cCCeEEEEEECC
Confidence 4679999998653 3355677889999988 899999999864
No 188
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=37.72 E-value=46 Score=29.26 Aligned_cols=41 Identities=7% Similarity=0.136 Sum_probs=31.9
Q ss_pred CCceEEEEEeCCc---hhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYSMY---GHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S~~---GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.+|||+|+|+..+ .-+-.=+..|.+.+.+ .|.++..+++..
T Consensus 36 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~ 79 (383)
T 3k3p_A 36 SKETLVLLYGGRSAERDVSVLSAESVMRAINY-DNFLVKTYFITQ 79 (383)
T ss_dssp -CEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred cCCeEEEEeCCCCCcchHHHHHHHHHHHHhhh-cCCEEEEEEecC
Confidence 3468999998653 3456778889999988 899999999874
No 189
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=37.66 E-value=49 Score=28.02 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=25.1
Q ss_pred eEEEEEe-C--CchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 48 KIFIIFY-S--MYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 48 kIlIIy~-S--~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
||.+|.+ | ..+.+++++++++. .|+++.+++....
T Consensus 66 kv~~IlGgstsQrlTSKQavEElL~-----cGvev~IiNrkRi 103 (358)
T 2c1l_A 66 RVIAILGGSTSQRLSSRQVVEELLN-----RGVEVHIINRKRI 103 (358)
T ss_dssp EEEEEEECCSSSCCBBHHHHHHHHH-----TTCEEEEEECSSC
T ss_pred cEEEEEcccccccccHHHHHHHHHh-----cCCceEEeeeeee
Confidence 7776665 4 46777877776654 6999999986654
No 190
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=37.40 E-value=39 Score=28.95 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=43.6
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe-cccc
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG-FPTR 126 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g-sP~y 126 (252)
+++||- +|.+-..|...++.+++ .|+++++++++...|. +...+ .+.+..++.||+. -...
T Consensus 203 dv~iva---~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~-------------d~~~i-~~~~~~~~~vvvvEe~~~ 264 (324)
T 1w85_B 203 DITIIA---YGAMVHESLKAAAELEK-EGISAEVVDLRTVQPL-------------DIETI-IGSVEKTGRAIVVQEAQR 264 (324)
T ss_dssp SEEEEE---CTTHHHHHHHHHHHHHH-TTCCEEEEECSEEESC-------------CHHHH-HHHHHHHSCEEEEEEEET
T ss_pred CEEEEE---ecHHHHHHHHHHHHHHh-cCCCEEEEEeeeecCC-------------CHHHH-HHHHhhCCcEEEEeCCCc
Confidence 555554 45555666666777776 7899999999865331 00011 3344555555444 3333
Q ss_pred CCCchHHHHHHHHh
Q 040588 127 FGSMASQMKAFFDS 140 (252)
Q Consensus 127 ~g~~~~~~k~fld~ 140 (252)
.|.+-..+..++..
T Consensus 265 ~Gg~g~~v~~~l~~ 278 (324)
T 1w85_B 265 QAGIAANVVAEINE 278 (324)
T ss_dssp TSSSHHHHHHHHHH
T ss_pred CChHHHHHHHHHHh
Confidence 56676777766654
No 191
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A
Probab=37.35 E-value=25 Score=26.14 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=18.5
Q ss_pred CCCceEEEEEeCCchhH--HHHHHHHHHhccc
Q 040588 44 TGQLKIFIIFYSMYGHV--EILARRMKKGVDS 73 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT--~~la~~i~~~l~~ 73 (252)
..|+|||.|. +||+ ..||+++.+.+..
T Consensus 2 ~~m~~VLFVC---~gN~cRSpmAEa~~~~~~~ 30 (134)
T 2l17_A 2 SHMKKVMFVC---KRNSCRSQMAEGFAKTLGA 30 (134)
T ss_dssp --CEEEEEEC---CSSTHHHHHHHHHHHHHSB
T ss_pred CCCCEEEEEe---CCchHHHHHHHHHHHHHcC
Confidence 3467888888 4443 5699999888754
No 192
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=36.99 E-value=94 Score=25.51 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=17.7
Q ss_pred hhhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 112 DLVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 112 ~l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
.+.++|.||++.|... +..+++.+.
T Consensus 63 ~~~~aDvVilavp~~~------~~~v~~~l~ 87 (290)
T 3b1f_A 63 FAALADVIILAVPIKK------TIDFIKILA 87 (290)
T ss_dssp TGGGCSEEEECSCHHH------HHHHHHHHH
T ss_pred hhcCCCEEEEcCCHHH------HHHHHHHHH
Confidence 4678999999999753 355555543
No 193
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=36.87 E-value=40 Score=31.38 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=31.1
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
..|++|+||-+- .||+..+++++ ++ .|+++.++...+ ...+.++|+|||..
T Consensus 2 ~~m~~I~Iid~~-~g~~~~~~~~l----~~-~G~~~~vv~~~~-----------------------~~~l~~~DglILpG 52 (555)
T 1jvn_A 2 SHMPVVHVIDVE-SGNLQSLTNAI----EH-LGYEVQLVKSPK-----------------------DFNISGTSRLILPG 52 (555)
T ss_dssp CSSCEEEEECCS-CSCCHHHHHHH----HH-TTCEEEEESSGG-----------------------GCCSTTCSCEEEEE
T ss_pred CCCCEEEEEECC-CCCHHHHHHHH----HH-CCCEEEEECCcc-----------------------ccccccCCEEEECC
Confidence 347889888642 35665555544 34 577776654211 12356899999965
Q ss_pred c
Q 040588 124 P 124 (252)
Q Consensus 124 P 124 (252)
|
T Consensus 53 g 53 (555)
T 1jvn_A 53 V 53 (555)
T ss_dssp C
T ss_pred C
Confidence 4
No 194
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=36.61 E-value=45 Score=30.79 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=20.9
Q ss_pred CceEEEE-EeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFII-FYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlII-y~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
.++|+|| |+| ++|..+++++. + .|+.++++...
T Consensus 7 ~~~IlIlD~g~--~~~~~i~r~lr----~-~G~~~~i~p~~ 40 (525)
T 1gpm_A 7 KHRILILDFGS--QYTQLVARRVR----E-LGVYCELWAWD 40 (525)
T ss_dssp SSEEEEEECSC--TTHHHHHHHHH----H-TTCEEEEEESC
T ss_pred CCEEEEEECCC--ccHHHHHHHHH----H-CCCEEEEEECC
Confidence 3578887 444 35666666554 4 57788887654
No 195
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=36.54 E-value=46 Score=27.50 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=16.8
Q ss_pred hhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 113 LVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 113 l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
+.++|.||++.|.+. +...++.+.
T Consensus 72 ~~~~d~vi~~v~~~~------~~~v~~~l~ 95 (316)
T 2ew2_A 72 NEQVDLIIALTKAQQ------LDAMFKAIQ 95 (316)
T ss_dssp SCCCSEEEECSCHHH------HHHHHHHHG
T ss_pred CCCCCEEEEEecccc------HHHHHHHHH
Confidence 348999999999752 455555554
No 196
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=36.15 E-value=12 Score=30.33 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=19.6
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
...+.++|.|||.||. .++.|++.+.
T Consensus 45 ~~~l~~~d~viftS~~-------aV~~~~~~l~ 70 (240)
T 3mw8_A 45 LDELSRADILIFISTS-------AVSFATPWLK 70 (240)
T ss_dssp HHHHTTCSEEEECSHH-------HHHHHHHHHT
T ss_pred HHHhcCCCEEEEECHH-------HHHHHHHHHH
Confidence 3567889999999985 4677777654
No 197
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=36.05 E-value=46 Score=28.69 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=29.5
Q ss_pred CCceEEEEEeCCch---hHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYSMYG---HVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S~~G---nT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
++|||+||++.... -+-.-+..+++.+.+ .|.++..+++..
T Consensus 2 ~~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (364)
T 2i87_A 2 TKENICIVFGGKSAEHEVSILTAQNVLNAIDK-DKYHVDIIYITN 45 (364)
T ss_dssp -CEEEEEEEECSSSCHHHHHHHHHHHHHTSCT-TTEEEEEEEECT
T ss_pred CCcEEEEEECCCCccchhHHHHHHHHHHHHhh-cCCEEEEEEEcC
Confidence 35799999976432 233456778888988 899999888764
No 198
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=35.56 E-value=1.4e+02 Score=22.97 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=24.4
Q ss_pred hhhhccCeEEEeccccCCCchHHH-HHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQM-KAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~-k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
..+..+|++|+..-.-...-...+ +.|++.+.. ...+.++.++++
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~-----~~~~~piilv~n 140 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-----FCPNTKMLLVGC 140 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HCTTCEEEEEEE
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----HCCCCCEEEEEe
Confidence 456789999998665432211222 344444332 234667776666
No 199
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=35.38 E-value=37 Score=22.49 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=20.8
Q ss_pred CceEEEEEeC-CchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYS-MYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S-~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|++|.+ |++ ..+.++++...+.+ .|++.+.+++..
T Consensus 11 M~~v~l-y~~~~Cp~C~~~~~~L~~-----~gi~~~~~~v~~ 46 (92)
T 3ic4_A 11 MAEVLM-YGLSTCPHCKRTLEFLKR-----EGVDFEVIWIDK 46 (92)
T ss_dssp CSSSEE-EECTTCHHHHHHHHHHHH-----HTCCCEEEEGGG
T ss_pred CceEEE-EECCCChHHHHHHHHHHH-----cCCCcEEEEeee
Confidence 455554 555 46788765554433 355677788763
No 200
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=35.33 E-value=1.3e+02 Score=24.10 Aligned_cols=86 Identities=13% Similarity=-0.006 Sum_probs=42.4
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
+||||||. ++ | .+...+++.+.+ .|.+|..+.-.... ...+.......-..|+.++ + +..+|.||....
T Consensus 4 m~~~ilVt-Ga--G---~iG~~l~~~L~~-~g~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~d~--~-~~~~d~vi~~a~ 72 (286)
T 3ius_A 4 MTGTLLSF-GH--G---YTARVLSRALAP-QGWRIIGTSRNPDQ-MEAIRASGAEPLLWPGEEP--S-LDGVTHLLISTA 72 (286)
T ss_dssp -CCEEEEE-TC--C---HHHHHHHHHHGG-GTCEEEEEESCGGG-HHHHHHTTEEEEESSSSCC--C-CTTCCEEEECCC
T ss_pred CcCcEEEE-CC--c---HHHHHHHHHHHH-CCCEEEEEEcChhh-hhhHhhCCCeEEEeccccc--c-cCCCCEEEECCC
Confidence 35676665 43 4 355566666655 57777766543221 1111111100000122222 2 678999998877
Q ss_pred ccCCCchHHHHHHHHhhh
Q 040588 125 TRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 125 ~y~g~~~~~~k~fld~l~ 142 (252)
...... +..+++++.+.
T Consensus 73 ~~~~~~-~~~~~l~~a~~ 89 (286)
T 3ius_A 73 PDSGGD-PVLAALGDQIA 89 (286)
T ss_dssp CBTTBC-HHHHHHHHHHH
T ss_pred cccccc-HHHHHHHHHHH
Confidence 654432 34566666654
No 201
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=35.21 E-value=1.1e+02 Score=20.93 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=23.9
Q ss_pred CCccccccccCCCCCCCCceEEEEEeCC-chhHHHHHHHHHHhc
Q 040588 29 VSSNLDQNQLTTTSTTGQLKIFIIFYSM-YGHVEILARRMKKGV 71 (252)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~kIlIIy~S~-~GnT~~la~~i~~~l 71 (252)
....|+.+++........+-++|.|++. .+.++.+...+.+-.
T Consensus 8 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~ 51 (121)
T 2djj_A 8 PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELG 51 (121)
T ss_dssp SSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred CeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHH
Confidence 3445566666554322333456666665 578887776655443
No 202
>3pnx_A Putative sulfurtransferase DSRE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE GOL; 1.92A {Syntrophomonas wolfei}
Probab=35.15 E-value=62 Score=24.95 Aligned_cols=42 Identities=7% Similarity=0.043 Sum_probs=29.5
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 43 TTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|+..+|+.||.+|.+=.-...+=.++.++.+ .|.+|+++---
T Consensus 1 ~m~~~kl~II~~sG~~dka~~a~ilA~~AaA-~G~eV~iFfTf 42 (160)
T 3pnx_A 1 GMENKKMNLLLFSGDYDKALASLIIANAARE-MEIEVTIFCAF 42 (160)
T ss_dssp CCTTCEEEEEECCCCHHHHHHHHHHHHHHHH-TTCEEEEEECG
T ss_pred CCCCCcEEEEEecCCHHHHHHHHHHHHHHHH-cCCCEEEEEee
Confidence 4556789999988764444444556666666 79999988754
No 203
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=35.04 E-value=29 Score=25.18 Aligned_cols=33 Identities=6% Similarity=0.043 Sum_probs=19.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|++|+|+=+ |. +...+++.+.+ .|.++.+++..
T Consensus 6 ~~~v~I~G~---G~---iG~~la~~L~~-~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGS---EA---AGVGLVRELTA-AGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECC---SH---HHHHHHHHHHH-TTCCEEEEESC
T ss_pred CCEEEEECC---CH---HHHHHHHHHHH-CCCeEEEEECC
Confidence 456766643 33 44445555555 67888888864
No 204
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=34.68 E-value=96 Score=23.51 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=26.6
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
...+..+|++|+..-.-...-...++.|++.+... ...++++.++++
T Consensus 95 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~N 141 (199)
T 2p5s_A 95 KSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA----AHETVPIMLVGN 141 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH----C---CCEEEEEE
T ss_pred HHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh----cCCCCCEEEEEE
Confidence 34567899999987654433334455566554321 224567777766
No 205
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=34.24 E-value=2.2e+02 Score=24.30 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=44.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhh--ccCeEEEec
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLV--HADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~--~aD~II~gs 123 (252)
.+||.|||.. +...+.+++.+.+.+++ .|.++........ ...++..+ ..+|. ..|+|++.+
T Consensus 164 ~~~vail~~~-~~~g~~~~~~~~~~~~~-~g~~vv~~~~~~~-------------~~~d~~~~-l~~i~~~~~d~v~~~~ 227 (419)
T 3h5l_A 164 NNKIAIITGP-GIYSVNIANAIRDGAGE-YGYDVSLFETVAI-------------PVSDWGPT-LAKLRADPPAVIVVTH 227 (419)
T ss_dssp SSEEEEEECS-SHHHHHHHHHHHHHGGG-GTCEEEEEEECCS-------------SCSCCHHH-HHHHHHSCCSEEEECC
T ss_pred CCEEEEEEcC-cchhHHHHHHHHHHHHH-cCCeEEEEecCCC-------------CCccHHHH-HHHHHhcCCCEEEEcc
Confidence 3689998854 45557788999999988 7877654332111 01233322 44553 578888752
Q ss_pred cccCCCchHHHHHHHHhhh
Q 040588 124 PTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 124 P~y~g~~~~~~k~fld~l~ 142 (252)
..+.....|+..+.
T Consensus 228 -----~~~~~~~~~~~~~~ 241 (419)
T 3h5l_A 228 -----FYPQDQALFMNQFM 241 (419)
T ss_dssp -----CCHHHHHHHHHHHT
T ss_pred -----ccCchHHHHHHHHH
Confidence 11234556666554
No 206
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=34.00 E-value=24 Score=30.59 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=27.6
Q ss_pred CCCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 42 STTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 42 ~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
....||||+++-....|+...++ .+++.+.+ .|.+|.++.-
T Consensus 16 ~~~~m~rIl~~~~~~~GHv~p~l-~La~~L~~-~Gh~V~v~~~ 56 (415)
T 3rsc_A 16 EGRHMAHLLIVNVASHGLILPTL-TVVTELVR-RGHRVSYVTA 56 (415)
T ss_dssp ---CCCEEEEECCSCHHHHGGGH-HHHHHHHH-TTCEEEEEEC
T ss_pred CcccCCEEEEEeCCCccccccHH-HHHHHHHH-CCCEEEEEeC
Confidence 34558899987766678765554 56666666 7889888774
No 207
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=33.83 E-value=61 Score=28.41 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=32.4
Q ss_pred CCceEEEEEeCCc---hhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYSMY---GHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S~~---GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.++||+|+|+..+ .-+-.-|..+++.+.+ .|.++..+++..
T Consensus 21 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~ 64 (386)
T 3e5n_A 21 RKIRVGLIFGGKSAEHEVSLQSARNILDALDP-QRFEPVLIGIDK 64 (386)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CCceEEEEeccCCCCchhHHHHHHHHHHHhCc-cCCEEEEEEECC
Confidence 4678999998653 3456678889999988 899999999864
No 208
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=33.07 E-value=77 Score=23.84 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCCCchHHHHHHH
Q 040588 59 HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFF 138 (252)
Q Consensus 59 nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fl 138 (252)
+++.+++.|++.+.+..+.++.++++++.. .-+|.+||+|..= ..++++..
T Consensus 18 ~~~~l~~~i~~al~dkKa~DI~vlDv~~~s-------------------------~~~DyfVIatg~S----~rqv~Aia 68 (136)
T 3ups_A 18 DPEMLLKLVTDSLDDDQALEIATIPLAGKS-------------------------SIADYMVIASGRS----SRQVTAMA 68 (136)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEEECTTTC-------------------------SSCSEEEEEECSS----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEEECCCCC-------------------------cccCEEEEEEcCC----HHHHHHHH
Confidence 367889999998877567789999998631 1269999998653 44555555
Q ss_pred Hhhh
Q 040588 139 DSTF 142 (252)
Q Consensus 139 d~l~ 142 (252)
+.+.
T Consensus 69 d~v~ 72 (136)
T 3ups_A 69 QKLA 72 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 209
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=32.84 E-value=22 Score=29.67 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=30.6
Q ss_pred HHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 64 ARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 64 a~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
|+.|.+.++. .+.+|+.+...+.. ..+|. +.+++.++|+||+.-.
T Consensus 35 ~~~~~~aL~~-~~~~V~~i~~~~~~--------------~~fP~-~~~~L~~yDvIIl~d~ 79 (248)
T 3soz_A 35 ADYLLSCLRQ-GNIDVDYMPAHIVQ--------------TRFPQ-TAEALACYDAIVISDI 79 (248)
T ss_dssp SHHHHHHHTT-TTCEEEEEETTHHH--------------HSCCC-SHHHHHTCSEEEEESC
T ss_pred HHHHHHHHhc-CCceeEEeCchhhh--------------hhCCC-ChHHHhcCCEEEEcCC
Confidence 4456677776 78899988875421 02332 3688999999999944
No 210
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=32.80 E-value=54 Score=28.37 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=25.7
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
+++||- +|.+...|...++.+++ .|+++.+++++..
T Consensus 218 dv~iia---~Gs~~~~a~~Aa~~L~~-~Gi~v~vv~~~~l 253 (341)
T 2ozl_B 218 HITVVS---HSRPVGHCLEAAAVLSK-EGVECEVINMRTI 253 (341)
T ss_dssp SEEEEE---CSTHHHHHHHHHHHHHT-TTCCEEEEECCEE
T ss_pred CEEEEE---eCHHHHHHHHHHHHHHh-cCCCeEEEeeeee
Confidence 565554 45555666677777777 7899999999865
No 211
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=32.63 E-value=68 Score=27.39 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=32.7
Q ss_pred CCceEEEEEeCCc---hhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYSMY---GHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S~~---GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.+|||+|+|+-.+ --+-.-+..+++.+.+ .|.++..+++..
T Consensus 2 ~~~~v~vl~GG~s~e~~vSl~sa~~v~~al~~-~g~~v~~i~~~~ 45 (346)
T 3se7_A 2 SHMKIGIIFGGVSEEHDISVKSAREVATHLGT-GVFEPFYLGITK 45 (346)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CCCEEEEEeeecCCCccHHHHHHHHHHHHhcc-cCCEEEEEEECC
Confidence 4689999998543 3466778889999988 899999999865
No 212
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=32.16 E-value=68 Score=26.70 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=32.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
..|.+.|-.|+.-+.+ |.+.+.+.+++ .|++++++...|+
T Consensus 4 ~~k~i~vgat~~P~ae-il~~vk~~l~k-~Gi~leiv~F~Dy 43 (249)
T 4got_A 4 GKKEIVVAATKTPHAE-ILKEAEPLLKE-KGYTLKVKVLSDY 43 (249)
T ss_dssp CTTEEEEEECTTTHHH-HHHHHHHHHHT-TTCEEEEECCSST
T ss_pred CCceEEEEeCCCCHHH-HHHHHHHHHHh-cCCeEEEEEeCCc
Confidence 3466677778776776 55888888988 8999999999987
No 213
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=32.11 E-value=2e+02 Score=23.97 Aligned_cols=117 Identities=13% Similarity=0.059 Sum_probs=58.9
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.+|||.||= .|+ |...++..+.+ .|.+|.+++........ +....... .... .+.+.++|.||+..|
T Consensus 8 ~~~~IgiIG---~G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~-~~~~g~~~----~~~~-~e~~~~aDvVi~~vp 74 (306)
T 3l6d_A 8 FEFDVSVIG---LGA---MGTIMAQVLLK-QGKRVAIWNRSPGKAAA-LVAAGAHL----CESV-KAALSASPATIFVLL 74 (306)
T ss_dssp CSCSEEEEC---CSH---HHHHHHHHHHH-TTCCEEEECSSHHHHHH-HHHHTCEE----CSSH-HHHHHHSSEEEECCS
T ss_pred CCCeEEEEC---CCH---HHHHHHHHHHH-CCCEEEEEeCCHHHHHH-HHHCCCee----cCCH-HHHHhcCCEEEEEeC
Confidence 357888773 342 44445555555 67788887654311001 11101000 0111 344678999999998
Q ss_pred ccCCCchHHHHHHHH--hhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 040588 125 TRFGSMASQMKAFFD--STFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 125 ~y~g~~~~~~k~fld--~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
.. ..++..+. .+.. ..+|+.+. .+ ++.. . .....+.+.+...|..+++.+
T Consensus 75 ~~-----~~~~~v~~~~~l~~-----~~~g~ivi--d~-st~~--~-~~~~~l~~~~~~~g~~~vdap 126 (306)
T 3l6d_A 75 DN-----HATHEVLGMPGVAR-----ALAHRTIV--DY-TTNA--Q-DEGLALQGLVNQAGGHYVKGM 126 (306)
T ss_dssp SH-----HHHHHHHTSTTHHH-----HTTTCEEE--EC-CCCC--T-THHHHHHHHHHHTTCEEEEEE
T ss_pred CH-----HHHHHHhcccchhh-----ccCCCEEE--EC-CCCC--H-HHHHHHHHHHHHcCCeEEecc
Confidence 53 34566554 2221 23455432 22 2211 1 134566667777888887653
No 214
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=31.90 E-value=64 Score=24.89 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=29.3
Q ss_pred ceEEEEEeCCch-hHHHHHHHHHHhccccCCc---eEEEEECCCC
Q 040588 47 LKIFIIFYSMYG-HVEILARRMKKGVDSIDGV---EGVLYRVPET 87 (252)
Q Consensus 47 ~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~---ev~l~~l~~~ 87 (252)
.||.||...-+- -|+.|.+...+.+.+ .|+ +++++.++-.
T Consensus 12 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~-~Gv~~~~i~v~~VPGa 55 (157)
T 2obx_A 12 VRIAVVRARWHADIVDQCVSAFEAEMAD-IGGDRFAVDVFDVPGA 55 (157)
T ss_dssp EEEEEEEECTTHHHHHHHHHHHHHHHHH-HHTTSEEEEEEEESSG
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcH
Confidence 589998876554 488888888888876 564 4677777754
No 215
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=31.61 E-value=96 Score=24.60 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=9.0
Q ss_pred hhhccCeEEEec
Q 040588 112 DLVHADGLLFGF 123 (252)
Q Consensus 112 ~l~~aD~II~gs 123 (252)
++.++|+|||..
T Consensus 57 ~l~~~Dglil~G 68 (219)
T 1q7r_A 57 QLEGLDGLVLPG 68 (219)
T ss_dssp GGTTCSEEEECC
T ss_pred HHhhCCEEEECC
Confidence 356799999953
No 216
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=31.39 E-value=91 Score=19.21 Aligned_cols=34 Identities=6% Similarity=0.112 Sum_probs=20.9
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 47 LKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|++. +|+++ .+.++++...+.+ .|++++.+++.+
T Consensus 1 m~i~-~y~~~~C~~C~~~~~~l~~-----~~i~~~~~di~~ 35 (75)
T 1r7h_A 1 MSIT-LYTKPACVQCTATKKALDR-----AGLAYNTVDISL 35 (75)
T ss_dssp CCEE-EEECTTCHHHHHHHHHHHH-----TTCCCEEEETTT
T ss_pred CeEE-EEeCCCChHHHHHHHHHHH-----cCCCcEEEECCC
Confidence 3444 45554 6778766555432 467788888875
No 217
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=31.00 E-value=1.6e+02 Score=24.76 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=35.7
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCc--eEEEEECCCCCCHHHHhcccCCCCCCCCcccchh-hhhccCeEEE
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGV--EGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVD-DLVHADGLLF 121 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~--ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~-~l~~aD~II~ 121 (252)
.+|||.||= .|+ |...++..+.+ .|. +|..++...... .......... ...... .+ .+.++|.||+
T Consensus 32 ~~~kI~IIG---~G~---mG~slA~~l~~-~G~~~~V~~~dr~~~~~-~~a~~~G~~~--~~~~~~-~~~~~~~aDvVil 100 (314)
T 3ggo_A 32 SMQNVLIVG---VGF---MGGSFAKSLRR-SGFKGKIYGYDINPESI-SKAVDLGIID--EGTTSI-AKVEDFSPDFVML 100 (314)
T ss_dssp SCSEEEEES---CSH---HHHHHHHHHHH-TTCCSEEEEECSCHHHH-HHHHHTTSCS--EEESCT-TGGGGGCCSEEEE
T ss_pred CCCEEEEEe---eCH---HHHHHHHHHHh-CCCCCEEEEEECCHHHH-HHHHHCCCcc--hhcCCH-HHHhhccCCEEEE
Confidence 346777763 343 55555555555 576 676666542100 0000111100 000111 23 4788999999
Q ss_pred ecccc
Q 040588 122 GFPTR 126 (252)
Q Consensus 122 gsP~y 126 (252)
+.|..
T Consensus 101 avp~~ 105 (314)
T 3ggo_A 101 SSPVR 105 (314)
T ss_dssp CSCGG
T ss_pred eCCHH
Confidence 99985
No 218
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=30.99 E-value=56 Score=27.96 Aligned_cols=34 Identities=12% Similarity=-0.031 Sum_probs=20.5
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+||+|+=++. +...++..+++ .|.++.+++-..
T Consensus 1 MK~I~ilGgg~------~g~~~~~~Ak~-~G~~vv~vd~~~ 34 (363)
T 4ffl_A 1 MKTICLVGGKL------QGFEAAYLSKK-AGMKVVLVDKNP 34 (363)
T ss_dssp CCEEEEECCSH------HHHHHHHHHHH-TTCEEEEEESCT
T ss_pred CCEEEEECCCH------HHHHHHHHHHH-CCCEEEEEeCCC
Confidence 56777775432 22334445556 788988887544
No 219
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=30.90 E-value=87 Score=28.85 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=21.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
+||+||=+ ..++|..+++.+.+ .|+.++++..
T Consensus 11 ~~I~IlD~-g~~~~~~i~r~lr~-----~Gv~~~i~p~ 42 (527)
T 3tqi_A 11 HRILILDF-GSQYAQLIARRVRE-----IGVYCELMPC 42 (527)
T ss_dssp SEEEEEEC-SCTTHHHHHHHHHH-----HTCEEEEEET
T ss_pred CeEEEEEC-CCccHHHHHHHHHH-----CCCeEEEEEC
Confidence 58988843 34577777776644 4677887754
No 220
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=30.71 E-value=31 Score=29.70 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=27.8
Q ss_pred CCCCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 42 STTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 42 ~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
....+|||+++-....|+...+ -.+++.+.+ .|.+|.++--.
T Consensus 16 ~~~~~MrIl~~~~~~~Gh~~~~-~~la~~L~~-~GheV~v~~~~ 57 (412)
T 3otg_A 16 IEGRHMRVLFASLGTHGHTYPL-LPLATAARA-AGHEVTFATGE 57 (412)
T ss_dssp --CCSCEEEEECCSSHHHHGGG-HHHHHHHHH-TTCEEEEEECG
T ss_pred cccceeEEEEEcCCCcccHHHH-HHHHHHHHH-CCCEEEEEccH
Confidence 3444689998876666775543 356667776 78888887654
No 221
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.59 E-value=1.2e+02 Score=21.05 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=30.2
Q ss_pred CCCCCccccccccCCCCCCCCceEEEEEeCC-chhHHHHHHHHHHhccccCC-ceEEEEECC
Q 040588 26 PDGVSSNLDQNQLTTTSTTGQLKIFIIFYSM-YGHVEILARRMKKGVDSIDG-VEGVLYRVP 85 (252)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G-~ev~l~~l~ 85 (252)
+++--..|+..++.........-++|.|++. .+.++.+...+.+-.++..+ -.+.++.+.
T Consensus 5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd 66 (133)
T 2dj3_A 5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMD 66 (133)
T ss_dssp SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEEC
T ss_pred CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3333444555555544433233455555665 57888877666554433111 135555553
No 222
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=30.34 E-value=54 Score=28.51 Aligned_cols=40 Identities=10% Similarity=0.201 Sum_probs=28.7
Q ss_pred CceEEEEEeCCch---hHHHHHHHHHHhc-cccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYG---HVEILARRMKKGV-DSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~G---nT~~la~~i~~~l-~~~~G~ev~l~~l~~ 86 (252)
+|||+|+++.... -+-.-+..+.+.+ .+ .|.++..+++..
T Consensus 3 k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~-~g~~v~~i~~~~ 46 (377)
T 1ehi_A 3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEAT-GKYEIIVFAIAQ 46 (377)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHH-SSEEEEEEEECT
T ss_pred CcEEEEEeCCCCCCcceeHHHHHHHHHHhCcc-cCcEEEEEEEcC
Confidence 5799999976543 2233466777777 76 789999998764
No 223
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=30.13 E-value=1e+02 Score=24.14 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=27.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
.+||+||-+ .||-..+.+++.+ .|+++.++. . .+++.++|+|||..
T Consensus 20 ~~~I~ii~~--~~~~~~~~~~l~~-----~g~~~~~~~--~-----------------------~~~l~~~d~iil~G 65 (208)
T 2iss_D 20 HMKIGVLGV--QGDVREHVEALHK-----LGVETLIVK--L-----------------------PEQLDMVDGLILPG 65 (208)
T ss_dssp CCEEEEECS--SSCHHHHHHHHHH-----TTCEEEEEC--S-----------------------GGGGGGCSEEEECS
T ss_pred CcEEEEEEC--CCchHHHHHHHHH-----CCCEEEEeC--C-----------------------hHHHhhCCEEEECC
Confidence 468999854 4555545555433 466666553 1 23356899999953
No 224
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=30.08 E-value=38 Score=26.90 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=33.8
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.+|||.|| + .|+ +...++..+.+ .|.++.+++-.... ...+.... . ..... .+.+.++|.||+++|
T Consensus 27 ~~~~I~ii-G--~G~---~G~~la~~l~~-~g~~V~~~~r~~~~-~~~~~~~g--~---~~~~~-~~~~~~~DvVi~av~ 92 (215)
T 2vns_A 27 EAPKVGIL-G--SGD---FARSLATRLVG-SGFKVVVGSRNPKR-TARLFPSA--A---QVTFQ-EEAVSSPEVIFVAVF 92 (215)
T ss_dssp --CCEEEE-C--CSH---HHHHHHHHHHH-TTCCEEEEESSHHH-HHHHSBTT--S---EEEEH-HHHTTSCSEEEECSC
T ss_pred CCCEEEEE-c--cCH---HHHHHHHHHHH-CCCEEEEEeCCHHH-HHHHHHcC--C---ceecH-HHHHhCCCEEEECCC
Confidence 45788877 3 343 44445555544 56677776643210 00000000 0 00011 244678999999999
Q ss_pred cc
Q 040588 125 TR 126 (252)
Q Consensus 125 ~y 126 (252)
..
T Consensus 93 ~~ 94 (215)
T 2vns_A 93 RE 94 (215)
T ss_dssp GG
T ss_pred hH
Confidence 64
No 225
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=29.96 E-value=47 Score=28.41 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=40.1
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc-cc
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP-TR 126 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP-~y 126 (252)
+++||- +|.+-..|...++.+++ .|+++++++++...|. |...+ .+.+..++.||+.=- .-
T Consensus 204 dv~iva---~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~-------------d~~~i-~~~~~~~~~vv~vEe~~~ 265 (324)
T 1umd_B 204 DLTLIC---YGTVMPEVLQAAAELAK-AGVSAEVLDLRTLMPW-------------DYEAV-MNSVAKTGRVVLVSDAPR 265 (324)
T ss_dssp SEEEEE---CGGGHHHHHHHHHHHHH-TTCCEEEEECCEEETC-------------CHHHH-HHHHHHHSCEEEEEEEES
T ss_pred CEEEEE---ecHHHHHHHHHHHHHHh-cCCCEEEEEeceecCC-------------CHHHH-HHHHhcCCeEEEEecCCc
Confidence 455443 44444555566666666 6889999999865331 00011 234455555555422 12
Q ss_pred CCCchHHHHHHHHh
Q 040588 127 FGSMASQMKAFFDS 140 (252)
Q Consensus 127 ~g~~~~~~k~fld~ 140 (252)
.|.+-..+..++..
T Consensus 266 ~gG~g~~v~~~l~~ 279 (324)
T 1umd_B 266 HASFVSEVAATIAE 279 (324)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 45565666655543
No 226
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=29.93 E-value=22 Score=29.08 Aligned_cols=26 Identities=8% Similarity=-0.134 Sum_probs=19.8
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhh
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFH 143 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~ 143 (252)
..+.++|.|||.||. .++.|++.+..
T Consensus 54 ~~l~~~d~vifTS~~-------aV~~~~~~l~~ 79 (254)
T 4es6_A 54 LDLDRYCAVVVVSKP-------AARLGLERLDR 79 (254)
T ss_dssp HTGGGCSEEEECSHH-------HHHHHHHHHHH
T ss_pred HhccCCCEEEEECHH-------HHHHHHHHHHH
Confidence 557889999999985 56777776654
No 227
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=29.83 E-value=59 Score=23.32 Aligned_cols=40 Identities=8% Similarity=0.027 Sum_probs=23.2
Q ss_pred CceEEEEE-eCCchhH--HHHHHHHHHhccccCCceEEEEECCCC
Q 040588 46 QLKIFIIF-YSMYGHV--EILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 46 ~~kIlIIy-~S~~GnT--~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
|+|++++. .||+|+. +.-.+.+...+ + .+.++.++-+.|-
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~-a-~~~~v~vff~~DG 43 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATS-A-LTDDLAVFFIADG 43 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHH-T-TCSCEEEEECGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHH-h-CCCCEEEEEehHH
Confidence 56787666 4578764 33333333333 3 4568888887763
No 228
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=29.72 E-value=1.9e+02 Score=22.20 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=17.7
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
..+...|.||...... ++. .+.+++.+.
T Consensus 69 ~~~~~~d~vv~~ag~~--n~~--~~~~~~~~~ 96 (221)
T 3r6d_A 69 QAVTNAEVVFVGAMES--GSD--MASIVKALS 96 (221)
T ss_dssp HHHTTCSEEEESCCCC--HHH--HHHHHHHHH
T ss_pred HHHcCCCEEEEcCCCC--Chh--HHHHHHHHH
Confidence 4456889999887643 222 566666653
No 229
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=29.72 E-value=1e+02 Score=23.65 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=30.7
Q ss_pred ceEEEEEeCCch-hHHHHHHHHHHhccccCCc---eEEEEECCCC
Q 040588 47 LKIFIIFYSMYG-HVEILARRMKKGVDSIDGV---EGVLYRVPET 87 (252)
Q Consensus 47 ~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~---ev~l~~l~~~ 87 (252)
.||.||...-+. -|+.|.+...+.+.+ .|+ +++++.++-.
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~-~gv~~~~i~v~~VPGa 56 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVR-HGGREEDITLVRVPGS 56 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEESSG
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcH
Confidence 589999876554 488899888888887 675 4688888764
No 230
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=29.64 E-value=76 Score=27.11 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=29.5
Q ss_pred ceEEEEEeC--CchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 47 LKIFIIFYS--MYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S--~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|||++|... ..|-.+..+..+++.+.+ . .+|+++....
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~-~-~~V~v~~~~~ 40 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISK-A-HEVIVFGIHA 40 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTT-T-SEEEEEEESC
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHh-c-CCeEEEeecC
Confidence 799988643 357778888899999988 6 8999887653
No 231
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=29.63 E-value=67 Score=25.07 Aligned_cols=34 Identities=9% Similarity=0.180 Sum_probs=18.8
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEE
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYR 83 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~ 83 (252)
+|+||+|+-+.. +++.. .+.+.+++ .|++++++.
T Consensus 1 m~~~i~il~~~~-~~~~~---~~~~~l~~-~g~~~~~~~ 34 (213)
T 3d54_D 1 MKPRACVVVYPG-SNCDR---DAYHALEI-NGFEPSYVG 34 (213)
T ss_dssp CCCEEEEECCTT-EEEHH---HHHHHHHT-TTCEEEEEC
T ss_pred CCcEEEEEEcCC-CCccH---HHHHHHHH-CCCEEEEEe
Confidence 367888876542 23211 23455555 677777664
No 232
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=29.35 E-value=86 Score=26.94 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.+|||+|+- + | .++..+++.+++ .|.++..++...
T Consensus 10 ~~~~ili~g-~--g---~~~~~~~~a~~~-~G~~v~~~~~~~ 44 (391)
T 1kjq_A 10 AATRVMLLG-S--G---ELGKEVAIECQR-LGVEVIAVDRYA 44 (391)
T ss_dssp TCCEEEEES-C--S---HHHHHHHHHHHT-TTCEEEEEESST
T ss_pred CCCEEEEEC-C--C---HHHHHHHHHHHH-cCCEEEEEECCC
Confidence 457898884 3 2 245566666776 788888887654
No 233
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=29.35 E-value=1.7e+02 Score=21.64 Aligned_cols=47 Identities=6% Similarity=-0.033 Sum_probs=28.0
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
...+..+|++|+....-...-...++.|+..+... ...++++.++++
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~n 135 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY----SWDNAQVILVGN 135 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEE
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEE
Confidence 45678899999987654433233445555554321 234677777776
No 234
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=29.33 E-value=1.7e+02 Score=21.53 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=18.5
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhcc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVD 72 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~ 72 (252)
..||+++=.+..|-|..+ +.+.....
T Consensus 14 ~~ki~vvG~~~~GKssL~-~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNL-KWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHH-HHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHH-HHHHhhcc
Confidence 357777777778999876 77766554
No 235
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=29.23 E-value=61 Score=25.02 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=30.6
Q ss_pred ceEEEEEeCCch-hHHHHHHHHHHhccccCCc--eEEEEECCCC
Q 040588 47 LKIFIIFYSMYG-HVEILARRMKKGVDSIDGV--EGVLYRVPET 87 (252)
Q Consensus 47 ~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~--ev~l~~l~~~ 87 (252)
.||.||...-+- -|+.|.+...+.+.+ .|+ +++++.++-.
T Consensus 14 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~-~Gv~~~i~v~~VPGa 56 (156)
T 1c2y_A 14 FRFAIVVARFNEFVTRRLMEGALDTFKK-YSVNEDIDVVWVPGA 56 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHH-TTCCSCCEEEEESSH
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCCceEEEECCcH
Confidence 589999877554 488899988898887 775 5778887654
No 236
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=29.23 E-value=20 Score=29.78 Aligned_cols=26 Identities=4% Similarity=-0.032 Sum_probs=19.6
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhh
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFH 143 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~ 143 (252)
..+.++|.|||.||. .++.|++.+..
T Consensus 62 ~~l~~~d~vifTS~n-------aV~~~~~~l~~ 87 (269)
T 3re1_A 62 FELLNYSAVIVVSKP-------AARLAIELIDE 87 (269)
T ss_dssp HTGGGSSEEEECSHH-------HHHHHHHHHHH
T ss_pred HhccCCCEEEEECHH-------HHHHHHHHHHH
Confidence 457889999999985 46777776654
No 237
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=29.05 E-value=48 Score=28.14 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=27.3
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEE
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLY 82 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~ 82 (252)
|+||+||+-...+....+++.+.+.+++ .|+++.+.
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~ 39 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGD-NKIALRVL 39 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHT-TTCEEEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEe
Confidence 5789988865566677788899999988 78877654
No 238
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=29.01 E-value=81 Score=23.10 Aligned_cols=37 Identities=3% Similarity=0.034 Sum_probs=22.8
Q ss_pred EEEEEeCC-chhHH--HHHHHHHHhccccCCceEEEEECCC
Q 040588 49 IFIIFYSM-YGHVE--ILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 49 IlIIy~S~-~GnT~--~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
+++||.|. .|+++ +=...+..-|.+ .|++.+.++|..
T Consensus 1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~-kgV~feEidI~~ 40 (121)
T 1u6t_A 1 VIRVYIASSSGSTAIKKKQQDVLGFLEA-NKIGFEEKDIAA 40 (121)
T ss_dssp CEEEEECTTCSCHHHHHHHHHHHHHHHH-TTCCEEEEECTT
T ss_pred CEEEEecCCCCCccchHHHHHHHHHHHH-CCCceEEEECCC
Confidence 46778775 57653 223333333444 688999999974
No 239
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=28.97 E-value=2.1e+02 Score=27.06 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=34.5
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE-ecc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF-GFP 124 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~-gsP 124 (252)
-++|+||= ...++|..+++.+.+ .|++++++..... .++.++|+||| |.|
T Consensus 446 Gk~IlviD-~gdsf~~~l~~~l~~-----~G~~v~Vv~~d~~-----------------------~~~~~~DgIIlsGGP 496 (645)
T 3r75_A 446 GCRALIVD-AEDHFTAMIAQQLSS-----LGLATEVCGVHDA-----------------------VDLARYDVVVMGPGP 496 (645)
T ss_dssp TCEEEEEE-SSCTHHHHHHHHHHH-----TTCEEEEEETTCC-----------------------CCGGGCSEEEECCCS
T ss_pred CCEEEEEE-CCccHHHHHHHHHHH-----CCCEEEEEECCCc-----------------------ccccCCCEEEECCCC
Confidence 35777764 345678877777654 5778888776531 23567899999 566
Q ss_pred cc
Q 040588 125 TR 126 (252)
Q Consensus 125 ~y 126 (252)
--
T Consensus 497 g~ 498 (645)
T 3r75_A 497 GD 498 (645)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 240
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=28.95 E-value=29 Score=30.18 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=24.1
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
+.||||+++-+...|+.. -+..+++.+.+ .|.+|.++.-.
T Consensus 5 m~m~kIl~~~~~~~Gh~~-p~~~la~~L~~-~G~~V~~~~~~ 44 (430)
T 2iyf_A 5 TTPAHIAMFSIAAHGHVN-PSLEVIRELVA-RGHRVTYAIPP 44 (430)
T ss_dssp ---CEEEEECCSCHHHHG-GGHHHHHHHHH-TTCEEEEEECG
T ss_pred cccceEEEEeCCCCcccc-chHHHHHHHHH-CCCeEEEEeCH
Confidence 446899986543457654 33456666666 68888887643
No 241
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=28.86 E-value=88 Score=27.26 Aligned_cols=42 Identities=10% Similarity=-0.015 Sum_probs=32.9
Q ss_pred CCceEEEEEeCCc---hhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 45 GQLKIFIIFYSMY---GHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 45 ~~~kIlIIy~S~~---GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
.+|||+|+|+..+ --+-+=|..+.+.+.+ .+.++..+++...
T Consensus 3 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~~l~~-~~~~v~~i~i~~~ 47 (372)
T 3tqt_A 3 EKLHISVLCGGQSTEHEISIQSAKNIVNTLDA-AKYLISVIFIDHV 47 (372)
T ss_dssp CSEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTT
T ss_pred CCCEEEEEeccCCCccHhHHHHHHHHHHHHhh-cCceEEEEEECCC
Confidence 3568999998543 4467778889999988 7899999998753
No 242
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=28.76 E-value=49 Score=25.07 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=21.2
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEE
Q 040588 44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGV 80 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~ 80 (252)
..|+|||.|+...... ..||++|++.+.. ..++++
T Consensus 18 ~~~~~VLFVC~gN~cR-SpmAEal~~~~~~-~~~~v~ 52 (148)
T 3rh0_A 18 SHMKSVLFVCVGNGGK-SQMAAALAQKYAS-DSVEIH 52 (148)
T ss_dssp --CCEEEEEESSSSSH-HHHHHHHHHHHCC-TTSEEE
T ss_pred CCCCEEEEECCCchhH-HHHHHHHHHHhcC-CCEEEE
Confidence 3477899988332222 5699999988754 334433
No 243
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=28.53 E-value=2.1e+02 Score=24.52 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=46.5
Q ss_pred CCceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCC----HHHHhcccCCCCCCCCcccchhhhhccCeE
Q 040588 45 GQLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLP----AEVLEQMKVPQKGIEVPVIAVDDLVHADGL 119 (252)
Q Consensus 45 ~~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p----~~~~~~~~~~~~~d~~~~~~~~~l~~aD~I 119 (252)
..+||+|+.-.+ .+.|+..-..++.... ..++++++++.+..+ .+-+.... .+++ ..+..++|++
T Consensus 46 rplkI~ILnlmp~k~~te~qf~rlL~~~~--~qv~v~~~~~~~~~~~~~~~~hl~~~y-----~~f~---~~~~~~~Dgl 115 (312)
T 2h2w_A 46 RPLEILILNLMPDKIKTEIQLLRLLGNTP--LQVNVTLLYTETHKPKHTPIEHILKFY-----TTFS---AVKDRKFDGF 115 (312)
T ss_dssp CCEEEEEECCCSSHHHHHHHHHHHHHSSS--SCEEEEEECCSCCCCCSSCHHHHHHHC-----BCGG---GTTTCCEEEE
T ss_pred CCceEEEEeCCCCcCchHHHHHHHhcCCC--CcEEEEEEEccCCCCCCccHHHHhhcc-----CCcc---cccccCcCEE
Confidence 357999999865 5778765555544332 356777777764321 11110000 0111 1124678988
Q ss_pred EE-eccccCC---Cc--hHHHHHHHHhhh
Q 040588 120 LF-GFPTRFG---SM--ASQMKAFFDSTF 142 (252)
Q Consensus 120 I~-gsP~y~g---~~--~~~~k~fld~l~ 142 (252)
|| |+|+-.. .+ -..++.+++...
T Consensus 116 IITGsP~~~~~~ed~~yw~el~~li~~~~ 144 (312)
T 2h2w_A 116 IITGAPVELLPFEEVDYWEELTEIMEWSR 144 (312)
T ss_dssp EECCCSCTTSCGGGSTTHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCccCchHHHHHHHHHHHH
Confidence 65 6886222 12 255677777653
No 244
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=28.38 E-value=1.5e+02 Score=21.74 Aligned_cols=47 Identities=9% Similarity=-0.055 Sum_probs=27.4
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
..+..+|++|+..-.-...-...++.|++.+... ....+.++.++++
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~n 135 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH---AYSENPDIVLCGN 135 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---SSSSSCCEEEEEE
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEE
Confidence 4567899999986654433333345555554321 1225677777776
No 245
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=28.26 E-value=57 Score=21.45 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=20.2
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
||+-+++|+++ .+.++++...+.+ .+++.+.+++.
T Consensus 4 mm~~v~~y~~~~C~~C~~~~~~L~~-----~~i~~~~vdv~ 39 (89)
T 2klx_A 4 SMKEIILYTRPNCPYCKRARDLLDK-----KGVKYTDIDAS 39 (89)
T ss_dssp CCCCEEEESCSCCTTTHHHHHHHHH-----HTCCEEEECSC
T ss_pred CcceEEEEECCCChhHHHHHHHHHH-----cCCCcEEEECC
Confidence 44445556654 5777766555443 24566777665
No 246
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=28.15 E-value=80 Score=27.74 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=22.1
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.+|||+|+-. | .++..+++.+++ .|.++..++...
T Consensus 18 ~~~~ili~g~---g---~~g~~~~~a~~~-~G~~v~~v~~~~ 52 (433)
T 2dwc_A 18 SAQKILLLGS---G---ELGKEIAIEAQR-LGVEVVAVDRYA 52 (433)
T ss_dssp TCCEEEEESC---S---HHHHHHHHHHHH-TTCEEEEEESST
T ss_pred CCCEEEEECC---C---HHHHHHHHHHHH-CCCEEEEEECCC
Confidence 3578998843 2 134445555555 788888887654
No 247
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=28.04 E-value=81 Score=24.14 Aligned_cols=12 Identities=33% Similarity=0.301 Sum_probs=9.1
Q ss_pred hhhccCeEEEec
Q 040588 112 DLVHADGLLFGF 123 (252)
Q Consensus 112 ~l~~aD~II~gs 123 (252)
++.++|+|||..
T Consensus 34 ~~~~~dglil~G 45 (186)
T 2ywj_A 34 DLEGIDALIIPG 45 (186)
T ss_dssp GGTTCSEEEECC
T ss_pred HhccCCEEEECC
Confidence 466789999864
No 248
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=27.90 E-value=72 Score=26.94 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=38.8
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHHhcc-ccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588 47 LKIFIIFYSM-YGHVEILARRMKKGVD-SIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF 123 (252)
Q Consensus 47 ~kIlIIy~S~-~GnT~~la~~i~~~l~-~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs 123 (252)
.+.+++||.+ +|-|. +|.+|+..+. . .|..+..+...+. ............+... ...+..+|.|||==
T Consensus 152 ~~~lll~G~~GtGKT~-La~aia~~~~~~-~g~~v~~~~~~~l-----~~~l~~~~~~~~~~~~-~~~~~~~~lLiiDd 222 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSY-LLAAMAHELSEK-KGVSTTLLHFPSF-----AIDVKNAISNGSVKEE-IDAVKNVPVLILDD 222 (308)
T ss_dssp CCEEEEECSTTSSHHH-HHHHHHHHHHHH-SCCCEEEEEHHHH-----HHHHHCCCC----CCT-THHHHTSSEEEEET
T ss_pred CceEEEECCCCCCHHH-HHHHHHHHHHHh-cCCcEEEEEHHHH-----HHHHHHHhccchHHHH-HHHhcCCCEEEEcC
Confidence 3678888875 79985 6778887776 5 6777766665431 1100000001112222 45667888888764
No 249
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=27.63 E-value=1e+02 Score=23.60 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=30.6
Q ss_pred ceEEEEEeCCch-hHHHHHHHHHHhccccCCc---eEEEEECCCC
Q 040588 47 LKIFIIFYSMYG-HVEILARRMKKGVDSIDGV---EGVLYRVPET 87 (252)
Q Consensus 47 ~kIlIIy~S~~G-nT~~la~~i~~~l~~~~G~---ev~l~~l~~~ 87 (252)
.||.||...-+- -|+.|.+...+.+.+ .|+ +++++.++-.
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~-~gv~~~~i~v~~VPGa 56 (154)
T 1rvv_A 13 LKIGIVVGRFNDFITSKLLSGAEDALLR-HGVDTNDIDVAWVPGA 56 (154)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEESSG
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcH
Confidence 589998876544 488899888888887 675 4688888764
No 250
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=26.88 E-value=1.7e+02 Score=20.95 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=49.3
Q ss_pred EEEEEeC-CchhHHHHHHHHHHhcccc--CCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 49 IFIIFYS-MYGHVEILARRMKKGVDSI--DGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 49 IlIIy~S-~~GnT~~la~~i~~~l~~~--~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
+|-+|-+ .+-++....+.+.+-+++. ..++.+++++.+. ..+.+.+ =|+++|+
T Consensus 9 ~L~LyVaG~tp~S~~ai~nL~~i~e~~l~~~y~LeVIDv~~~-----------------------PelAe~~-~IvAtPT 64 (105)
T 1wwj_A 9 VLKLYVAGNTPNSVRALKMLKNILEQEFQGVYALKVIDVLKN-----------------------PQLAEED-KILATPT 64 (105)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTC-----------------------CSCCTTC-EEECHHH
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCCeEEEEEEcccC-----------------------HhHHhHC-CeEEech
Confidence 5778877 5667777777766655431 3468889998763 1223333 3689999
Q ss_pred cCCCchHHHHHHHHhhhh
Q 040588 126 RFGSMASQMKAFFDSTFH 143 (252)
Q Consensus 126 y~g~~~~~~k~fld~l~~ 143 (252)
---..|.+.+.++=.+..
T Consensus 65 LiK~~P~P~rriiGDLsd 82 (105)
T 1wwj_A 65 LAKILPPPVRKIIGDLSD 82 (105)
T ss_dssp HGGGSCHHHHHHHHHHHH
T ss_pred hhhcCCCCceeEeecCCC
Confidence 998899999999977653
No 251
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=26.71 E-value=1.5e+02 Score=24.71 Aligned_cols=53 Identities=15% Similarity=0.007 Sum_probs=27.8
Q ss_pred hhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcC
Q 040588 113 LVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHG 183 (252)
Q Consensus 113 l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G 183 (252)
+.++|.||-.|| |......+..+.. .|+++ +++|.|+. +..+..+.+.....+
T Consensus 71 l~~~DVVIDfT~------p~a~~~~~~~al~-------~G~~v-VigTTG~s----~~~~~~L~~aa~~~~ 123 (272)
T 4f3y_A 71 CAEADYLIDFTL------PEGTLVHLDAALR-------HDVKL-VIGTTGFS----EPQKAQLRAAGEKIA 123 (272)
T ss_dssp HHHCSEEEECSC------HHHHHHHHHHHHH-------HTCEE-EECCCCCC----HHHHHHHHHHTTTSE
T ss_pred hcCCCEEEEcCC------HHHHHHHHHHHHH-------cCCCE-EEECCCCC----HHHHHHHHHHhccCC
Confidence 568999988764 4445555544321 34544 45555552 223445555444433
No 252
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=26.54 E-value=46 Score=22.74 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=11.4
Q ss_pred hhhhccCeEEEecccc
Q 040588 111 DDLVHADGLLFGFPTR 126 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y 126 (252)
+.+..+|.||..+|..
T Consensus 65 ~~~~~~d~vi~~~~~~ 80 (118)
T 3ic5_A 65 KALGGFDAVISAAPFF 80 (118)
T ss_dssp HHTTTCSEEEECSCGG
T ss_pred HHHcCCCEEEECCCch
Confidence 3456788888888743
No 253
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=26.49 E-value=70 Score=28.09 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=23.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
++||+|+-+. .++..+++.+++ .|+++.+++ ..
T Consensus 24 ~~~I~ilGgG------~lg~~l~~aa~~-lG~~v~~~d-~~ 56 (403)
T 3k5i_A 24 SRKVGVLGGG------QLGRMLVESANR-LNIQVNVLD-AD 56 (403)
T ss_dssp CCEEEEECCS------HHHHHHHHHHHH-HTCEEEEEE-ST
T ss_pred CCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEE-CC
Confidence 4678887754 366666666766 688888888 54
No 254
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=26.46 E-value=94 Score=23.01 Aligned_cols=41 Identities=10% Similarity=-0.059 Sum_probs=23.2
Q ss_pred CceEEEEE-eCCchh-HHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 46 QLKIFIIF-YSMYGH-VEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 46 ~~kIlIIy-~S~~Gn-T~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
|+|++++. .+++|+ ...-+=.++..+.+ .|.++.++-..|-
T Consensus 5 Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a-~~~~v~Vff~~DG 47 (136)
T 2hy5_B 5 VKKFMYLNRKAPYGTIYAWEALEVVLIGAA-FDQDVCVLFLDDG 47 (136)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGG-GCCEEEEEECGGG
T ss_pred hhEEEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCCEEEEEEhHH
Confidence 55687666 457875 22333333333333 4678888887763
No 255
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=26.43 E-value=60 Score=27.34 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=29.4
Q ss_pred CCceEEEEEeC--C-chhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 45 GQLKIFIIFYS--M-YGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 45 ~~~kIlIIy~S--~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
.||||++|..+ + .|-.+..+..+++.+ .|.+|+++.....
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L---~g~~v~v~~~~~~ 45 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ---DPESIVVFASTQN 45 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS---CGGGEEEEEECSS
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh---cCCeEEEEECCCC
Confidence 47899998753 2 477778888888888 3678888876643
No 256
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=26.39 E-value=2.7e+02 Score=25.12 Aligned_cols=36 Identities=25% Similarity=0.485 Sum_probs=24.2
Q ss_pred ccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCc
Q 040588 148 QRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGY 191 (252)
Q Consensus 148 ~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~ 191 (252)
..|.||++++|+- . .. ...+..+|...||.++..+.
T Consensus 328 ~~l~GKrv~i~~~--~---~~---~~~l~~~L~ElGmevv~~gt 363 (483)
T 3pdi_A 328 ARLEGKRVLLYTG--G---VK---SWSVVSALQDLGMKVVATGT 363 (483)
T ss_dssp HHHTTCEEEEECS--S---SC---HHHHHHHHHHHTCEEEEECB
T ss_pred HHhcCCEEEEECC--C---ch---HHHHHHHHHHCCCEEEEEec
Confidence 4689999987652 1 22 23456677889999986543
No 257
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=26.28 E-value=2.2e+02 Score=21.84 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=28.1
Q ss_pred hhhhhccCeEEEeccccCCCchHH-HHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQ-MKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~-~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
...+..+|++|+..-+-...-... ++.|++.+.. ...+.++.++++
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~-----~~~~~piilv~n 139 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD-----YCPSTRVLLIGC 139 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHH-----HCTTSEEEEEEE
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHH-----hCCCCCEEEEEE
Confidence 345788999999877654332222 4556665542 234667777766
No 258
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=26.28 E-value=84 Score=29.63 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=47.1
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhcc-CeEEEecc-c
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHA-DGLLFGFP-T 125 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~a-D~II~gsP-~ 125 (252)
+|+||- +|..-..|..+++.+++ .|+++++++++...|. |...+ .+.+.++ ..||+.=- .
T Consensus 500 dv~iva---~G~~v~~al~Aa~~L~~-~Gi~v~Vidlr~l~Pl-------------D~e~i-~~~~~~~~~~vvvvEe~~ 561 (616)
T 3mos_A 500 QVTVIG---AGVTLHEALAAAELLKK-EKINIRVLDPFTIKPL-------------DRKLI-LDSARATKGRILTVEDHY 561 (616)
T ss_dssp EEEEEC---CTHHHHHHHHHHHHHHT-TTCEEEEEECSEEESC-------------CHHHH-HHHHHHTTTEEEEEEEEE
T ss_pred CEEEEE---eCHHHHHHHHHHHHHHh-cCCCEEEEEeCccCCC-------------CHHHH-HHHHHhcCCEEEEEcCCC
Confidence 355553 56666677777778877 7999999999865431 01111 3445666 66766533 3
Q ss_pred cCCCchHHHHHHHHh
Q 040588 126 RFGSMASQMKAFFDS 140 (252)
Q Consensus 126 y~g~~~~~~k~fld~ 140 (252)
-.|++-+.+..++..
T Consensus 562 ~~GG~G~~v~~~l~~ 576 (616)
T 3mos_A 562 YEGGIGEAVSSAVVG 576 (616)
T ss_dssp STTSHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHh
Confidence 357777777777643
No 259
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=26.28 E-value=1.2e+02 Score=26.25 Aligned_cols=35 Identities=23% Similarity=0.085 Sum_probs=21.8
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.+++|+|+-+. .++..+++.+++ .|.++.+++...
T Consensus 11 ~~~~IlIlG~G------~lg~~la~aa~~-lG~~viv~d~~~ 45 (377)
T 3orq_A 11 FGATIGIIGGG------QLGKMMAQSAQK-MGYKVVVLDPSE 45 (377)
T ss_dssp TTCEEEEECCS------HHHHHHHHHHHH-TTCEEEEEESCT
T ss_pred CCCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEECCC
Confidence 34577776533 235555666666 788888887644
No 260
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=26.06 E-value=1.2e+02 Score=19.02 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=21.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+|++.+.+..+.++++...+.+ .+++++.+++.+
T Consensus 1 m~v~~f~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~ 35 (81)
T 1h75_A 1 MRITIYTRNDCVQCHATKRAMEN-----RGFDFEMINVDR 35 (81)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHH-----TTCCCEEEETTT
T ss_pred CEEEEEcCCCChhHHHHHHHHHH-----CCCCeEEEECCC
Confidence 45555443446788776655443 356778888865
No 261
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=26.00 E-value=40 Score=28.18 Aligned_cols=36 Identities=11% Similarity=-0.124 Sum_probs=23.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEE
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLY 82 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~ 82 (252)
|+|++|||--..+....+++.+.+.+++ .|+++.+.
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~-~g~~v~~~ 40 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCD-QGYEVIVE 40 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHH-TTCEEEEE
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEe
Confidence 6789888854456667788888888888 78877654
No 262
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=25.63 E-value=1.1e+02 Score=22.04 Aligned_cols=34 Identities=3% Similarity=-0.180 Sum_probs=22.1
Q ss_pred EEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCC
Q 040588 50 FIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPET 87 (252)
Q Consensus 50 lIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~ 87 (252)
+.||+.++-.|-+-|..+++. .|++++.+++.+.
T Consensus 5 i~iY~~~~C~~c~ka~~~L~~----~gi~~~~~di~~~ 38 (120)
T 3fz4_A 5 LTFYEYPKCSTCRRAKAELDD----LAWDYDAIDIKKN 38 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHH----HTCCEEEEETTTS
T ss_pred EEEEeCCCChHHHHHHHHHHH----cCCceEEEEeccC
Confidence 567887765444445444443 5788999998764
No 263
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=25.40 E-value=1.9e+02 Score=24.20 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=17.9
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
+.+.++|.||++.|.+ .+...++.+.
T Consensus 80 e~~~~aDvVilav~~~------~~~~vl~~l~ 105 (322)
T 2izz_A 80 ETVQHSDVLFLAVKPH------IIPFILDEIG 105 (322)
T ss_dssp HHHHHCSEEEECSCGG------GHHHHHHHHG
T ss_pred HHhccCCEEEEEeCHH------HHHHHHHHHH
Confidence 4567899999999954 3455555543
No 264
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=25.35 E-value=1e+02 Score=27.08 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=29.4
Q ss_pred CCceEEEEEeC--Cc---hhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYS--MY---GHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S--~~---GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.+|||+++..+ +. |-... +..+++.+.+ .|.+|+++....
T Consensus 45 ~~mrI~~v~~~~~p~~~~GG~~~-v~~la~~L~~-~GheV~Vvt~~~ 89 (413)
T 2x0d_A 45 KGKRLNLLVPSINQEHMFGGIST-ALKLFEQFDN-KKFKKRIILTDA 89 (413)
T ss_dssp CSCEEEEEESCCCGGGCSHHHHH-HHHHHTTSCT-TTCEEEEEESSC
T ss_pred CCceEEEEeCCCCccccccHHHH-HHHHHHHHHH-cCCceEEEEecC
Confidence 34799988754 32 55544 5688899988 899999998754
No 265
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=25.27 E-value=66 Score=23.35 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=12.3
Q ss_pred hhhccCeEEEecccc
Q 040588 112 DLVHADGLLFGFPTR 126 (252)
Q Consensus 112 ~l~~aD~II~gsP~y 126 (252)
.+.++|.+|+.+|.-
T Consensus 68 ~i~~ad~vi~~~~~~ 82 (140)
T 3fwz_A 68 HLECAKWLILTIPNG 82 (140)
T ss_dssp TGGGCSEEEECCSCH
T ss_pred CcccCCEEEEECCCh
Confidence 367899999999874
No 266
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=25.27 E-value=1.6e+02 Score=21.86 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=28.5
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhh-hccC---CCCcEEEEEe
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWE-QQRL---AGVPAGFFVS 160 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~-~~~l---~gK~~~if~s 160 (252)
..+..+|++|+..-.-...-...+..++..+..... .... .+.++.++++
T Consensus 82 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~N 135 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFAN 135 (199)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEE
T ss_pred HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEE
Confidence 447789999998776654434455556655432100 0001 2677777776
No 267
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=24.90 E-value=2.8e+02 Score=22.54 Aligned_cols=116 Identities=10% Similarity=0.026 Sum_probs=58.2
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecccc
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTR 126 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y 126 (252)
|||.||= .|+ |...++..+.+ .|.+|.+++............ .... .... .+.+.++|.||+..|.-
T Consensus 2 ~~i~iIG---~G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~-g~~~----~~~~-~~~~~~aDvvi~~vp~~ 68 (287)
T 3pef_A 2 QKFGFIG---LGI---MGSAMAKNLVK-AGCSVTIWNRSPEKAEELAAL-GAER----AATP-CEVVESCPVTFAMLADP 68 (287)
T ss_dssp CEEEEEC---CSH---HHHHHHHHHHH-TTCEEEEECSSGGGGHHHHHT-TCEE----CSSH-HHHHHHCSEEEECCSSH
T ss_pred CEEEEEe---ecH---HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHC-CCee----cCCH-HHHHhcCCEEEEEcCCH
Confidence 5777763 242 44444555555 677888877653211111111 0000 0111 34467899999999852
Q ss_pred CCCchHHHHHHH---HhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 040588 127 FGSMASQMKAFF---DSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 127 ~g~~~~~~k~fl---d~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
..++..+ +.+... .-+++.+ ...++ .. ......+...+...|..+++.+
T Consensus 69 -----~~~~~v~~~~~~l~~~----l~~~~~v---i~~st--~~-~~~~~~~~~~~~~~g~~~~~~p 120 (287)
T 3pef_A 69 -----AAAEEVCFGKHGVLEG----IGEGRGY---VDMST--VD-PATSQRIGVAVVAKGGRFLEAP 120 (287)
T ss_dssp -----HHHHHHHHSTTCHHHH----CCTTCEE---EECSC--CC-HHHHHHHHHHHHHTTCEEEECC
T ss_pred -----HHHHHHHcCcchHhhc----CCCCCEE---EeCCC--CC-HHHHHHHHHHHHHhCCEEEECC
Confidence 3455555 433221 1244432 22222 12 2345566677777888887643
No 268
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=24.86 E-value=70 Score=24.81 Aligned_cols=26 Identities=12% Similarity=-0.031 Sum_probs=17.8
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhh
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~ 142 (252)
+.+.++|.||+..|.. .++.+++.+.
T Consensus 60 ~~~~~~D~Vi~~~~~~------~~~~~~~~l~ 85 (212)
T 1jay_A 60 DAAEACDIAVLTIPWE------HAIDTARDLK 85 (212)
T ss_dssp HHHHHCSEEEECSCHH------HHHHHHHHTH
T ss_pred HHHhcCCEEEEeCChh------hHHHHHHHHH
Confidence 4467899999999853 3455555543
No 269
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=24.84 E-value=71 Score=25.72 Aligned_cols=37 Identities=5% Similarity=0.153 Sum_probs=29.0
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
++.+++.+.....+.+|+.|++.+++ .|+++++..+.
T Consensus 129 ~l~l~~~~~~~~~~~~a~~iq~~l~~-iGi~v~i~~~~ 165 (258)
T 3lvu_A 129 ALRFLLRQGDSDMQTVLEIYTRALER-LGIAAQIEKVD 165 (258)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHT-TTCCCEEEEEC
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHH-cCCeeEEEecC
Confidence 45566666556678899999999999 89998887654
No 270
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=24.66 E-value=62 Score=23.42 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=29.8
Q ss_pred CCCCCccccccccCCCCCCCCceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 26 PDGVSSNLDQNQLTTTSTTGQLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
+++..-.++..++.... ...+-++|.|++. -+.++.+...+.+..++ .+-.+.++.+
T Consensus 36 ~~~~v~~l~~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~-~~~~~~~~~v 93 (148)
T 3p2a_A 36 FDGEVINATAETLDKLL-QDDLPMVIDFWAPWCGPCRSFAPIFAETAAE-RAGKVRFVKV 93 (148)
T ss_dssp TCCCCEECCTTTHHHHT-TCSSCEEEEEECSSCHHHHHHHHHHHHHHHH-TTTTCEEEEE
T ss_pred ccCCceecCHHHHHHHH-hcCCcEEEEEECCCCHHHHHHHHHHHHHHHH-cCCceEEEEE
Confidence 44444455555554444 2233456656665 57888887766655544 2223444444
No 271
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=24.58 E-value=70 Score=22.56 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=11.9
Q ss_pred hhccCeEEEecccc
Q 040588 113 LVHADGLLFGFPTR 126 (252)
Q Consensus 113 l~~aD~II~gsP~y 126 (252)
+.++|.||+.+|..
T Consensus 67 ~~~~d~vi~~~~~~ 80 (140)
T 1lss_A 67 IEDADMYIAVTGKE 80 (140)
T ss_dssp TTTCSEEEECCSCH
T ss_pred cccCCEEEEeeCCc
Confidence 67899999999864
No 272
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=24.14 E-value=2e+02 Score=20.69 Aligned_cols=106 Identities=14% Similarity=0.044 Sum_probs=53.4
Q ss_pred CCceEEEEEeCCc-h-hHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 45 GQLKIFIIFYSMY-G-HVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 45 ~~~kIlIIy~S~~-G-nT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
.+++|+||=.|.+ + -..++++.+. + .|.++-.++.+... .....|.. . ..++.+-|.+++.
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~----~-~g~~V~pVnP~~~~----i~G~~~y~---s-----l~dlp~vDlavi~ 65 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLK----S-HGHEFIPVGRKKGE----VLGKTIIN---E-----RPVIEGVDTVTLY 65 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHH----H-HTCCEEEESSSCSE----ETTEECBC---S-----CCCCTTCCEEEEC
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHH----H-CCCeEEEECCCCCc----CCCeeccC---C-----hHHCCCCCEEEEE
Confidence 3467888888864 2 2334444443 3 35555554443210 00111221 1 2233236999998
Q ss_pred ccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEec
Q 040588 123 FPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVP 188 (252)
Q Consensus 123 sP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~ 188 (252)
.|- ..+...++.+.. .|-++. +.+.|.. . .++.+.+..+|+.+++
T Consensus 66 ~p~------~~v~~~v~e~~~-------~g~k~v-~~~~G~~---~----~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 66 INP------QNQLSEYNYILS-------LKPKRV-IFNPGTE---N----EELEEILSENGIEPVI 110 (122)
T ss_dssp SCH------HHHGGGHHHHHH-------HCCSEE-EECTTCC---C----HHHHHHHHHTTCEEEE
T ss_pred eCH------HHHHHHHHHHHh-------cCCCEE-EECCCCC---h----HHHHHHHHHcCCeEEC
Confidence 875 333444444432 122343 4444431 1 3577788889999985
No 273
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=23.92 E-value=38 Score=27.41 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=21.7
Q ss_pred ccCeEEEeccccCCC-chHHHHHHHHhhhhhh
Q 040588 115 HADGLLFGFPTRFGS-MASQMKAFFDSTFHLW 145 (252)
Q Consensus 115 ~aD~II~gsP~y~g~-~~~~~k~fld~l~~~~ 145 (252)
.+|.+|+|+|+|... +...++.+.+.+...|
T Consensus 189 Gad~~VvG~~I~~a~dp~~a~~~~~~~~~~~~ 220 (221)
T 3exr_A 189 DVFTFIAGRGITEAKNPAGAARAFKDEIKRIW 220 (221)
T ss_dssp CCSEEEECHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECchhhCCCCHHHHHHHHHHHHHHHh
Confidence 378999999999654 4455666666655444
No 274
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=23.85 E-value=2.2e+02 Score=20.96 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=26.0
Q ss_pred hhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 111 DDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 111 ~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
..+..+|++|+..-+-...-...+..|+..+... ....++++.++++
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ilv~n 134 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRV---KDSDDVPMVLVGN 134 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---HTCSCCCEEEEEE
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHH---hCCCCCeEEEEEE
Confidence 4467899999876654333233455555554321 1224677777776
No 275
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=23.61 E-value=2.6e+02 Score=25.05 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=32.4
Q ss_pred ccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 040588 115 HADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPI 189 (252)
Q Consensus 115 ~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~ 189 (252)
.+|.||+..|.. ..++.+++.+.. .+ +|+. +...++ +... ....+.+.+...|..+++.
T Consensus 68 ~aDvVilavp~~-----~~v~~vl~~l~~-----~l~~g~i---iId~s~--~~~~-~~~~l~~~l~~~g~~~v~~ 127 (474)
T 2iz1_A 68 KPRRIMLMVQAG-----AATDATIKSLLP-----LLDIGDI---LIDGGN--THFP-DTMRRNAELADSGINFIGT 127 (474)
T ss_dssp SSCEEEECCCTT-----HHHHHHHHHHGG-----GCCTTCE---EEECSC--CCHH-HHHHHHHHTTTSSCEEEEE
T ss_pred CCCEEEEEccCc-----hHHHHHHHHHHh-----hCCCCCE---EEECCC--CCHH-HHHHHHHHHHHCCCeEECC
Confidence 399999999974 245666666543 23 3443 333322 2222 2344555555567776654
No 276
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=23.38 E-value=97 Score=27.39 Aligned_cols=32 Identities=6% Similarity=0.074 Sum_probs=19.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
.++|++|=++.. .-+++. +.+ .|+++.++...
T Consensus 190 ~~~V~viD~G~k---~ni~r~----L~~-~G~~v~vvp~~ 221 (379)
T 1a9x_B 190 PFHVVAYDFGAK---RNILRM----LVD-RGCRLTIVPAQ 221 (379)
T ss_dssp CEEEEEEESSCC---HHHHHH----HHH-TTEEEEEEETT
T ss_pred CCEEEEEECCCh---HHHHHH----HHH-CCCEEEEEecc
Confidence 358888877543 224444 444 68888887654
No 277
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}
Probab=23.37 E-value=1.3e+02 Score=22.16 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=22.6
Q ss_pred CceEEEEEeCCc-hhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFIIFYSMY-GHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S~~-GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|++.||+++-+. |-++.+- .+.+.++. +.++.++.
T Consensus 1 mK~tLILfGKP~C~vCe~~s-~~l~~led----eY~ilrVN 36 (124)
T 2g2q_A 1 MKNVLIIFGKPYCSICENVS-DAVEELKS----EYDILHVD 36 (124)
T ss_dssp CCEEEEEEECTTCHHHHHHH-HHHHTTTT----TEEEEEEE
T ss_pred CCceEEEeCCCccHHHHHHH-HHHHHhhc----cccEEEEE
Confidence 688999999885 6565444 44477764 45555543
No 278
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=23.35 E-value=2.2e+02 Score=21.28 Aligned_cols=47 Identities=4% Similarity=-0.041 Sum_probs=28.1
Q ss_pred hhhhhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 110 ~~~l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
...+..+|++|+..-.-...-...++.|+..+... ...++++.++++
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~n 121 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVLLVGN 121 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCSSCEEEEEEE
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEE
Confidence 34567899999987764433233455565554321 235677777776
No 279
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=23.30 E-value=4e+02 Score=23.78 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=24.3
Q ss_pred CCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEe
Q 040588 150 LAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYV 187 (252)
Q Consensus 150 l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv 187 (252)
++|+++++++.+.-..|....+..++...+...|+.+.
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~ 223 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVV 223 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEE
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEE
Confidence 67888887754322223323466788888888888764
No 280
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=23.23 E-value=3.1e+02 Score=23.21 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=43.7
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCccc--chh--hhhccCeEE
Q 040588 46 QLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVI--AVD--DLVHADGLL 120 (252)
Q Consensus 46 ~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~--~~~--~l~~aD~II 120 (252)
.+||+|+.-.+ .+.|+..-..++.... ..++++++++.+..++.. ..+.+..+ +.+ +..++|++|
T Consensus 35 plkI~ILnlmp~k~~te~qf~rlL~~~~--~qv~v~~~~~~~~~~~~~--------~~~hl~~~y~~f~~~~~~~~DglI 104 (301)
T 2vdj_A 35 ALKIAILNLMPTKQETEAQLLRLIGNTP--LQLDVHLLHMESHLSRNV--------AQEHLTSFYKTFRDIENEKFDGLI 104 (301)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHTCSS--SCEEEEEECCCC--------------------CCEECHHHHTTSCEEEEE
T ss_pred CceEEEEeCCCCcCchHHHHHHHhcCCC--CcEEEEEEeccCCCCCCc--------cHHHHhhcccCcccccccccCEEE
Confidence 47999999865 4778755444443322 346677777654321100 00111111 122 246789886
Q ss_pred E-eccccCC---Cc--hHHHHHHHHhhh
Q 040588 121 F-GFPTRFG---SM--ASQMKAFFDSTF 142 (252)
Q Consensus 121 ~-gsP~y~g---~~--~~~~k~fld~l~ 142 (252)
| |+|+-.. .+ -..++.+++...
T Consensus 105 ITGap~~~~~~ed~~yw~el~~li~~~~ 132 (301)
T 2vdj_A 105 ITGAPVETLSFEEVDYWEELKRIMEYSK 132 (301)
T ss_dssp ECCCTTTTSCGGGSTTHHHHHHHHHHHH
T ss_pred ECCCCCcCCCcccCchHHHHHHHHHHHH
Confidence 5 6886222 12 255677777653
No 281
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=23.21 E-value=1.5e+02 Score=18.89 Aligned_cols=34 Identities=6% Similarity=-0.118 Sum_probs=18.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|+|.+.+.+..+.++++-..+ +. .|++.+.+++.
T Consensus 4 m~v~ly~~~~Cp~C~~~~~~L-~~----~~i~~~~~~vd 37 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAKQWF-EE----NNIAFDETIID 37 (89)
T ss_dssp CCEEEEECTTCHHHHHHHHHH-HH----TTCCCEEEECC
T ss_pred eEEEEEEcCCChhHHHHHHHH-HH----cCCCceEEEee
Confidence 555443334467777654433 33 45667777664
No 282
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=22.91 E-value=2e+02 Score=23.47 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=32.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
||+|||. |-|-.+...+++.+.+ .|.+|..+.-..... . ........-+-. ++...+.+...|.||.....
T Consensus 2 ~~~vlVt-----GatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~-~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 2 SLKIAVT-----GGTGFLGQYVVESIKN-DGNTPIILTRSIGNK-A-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CCEEEEE-----TTTSHHHHHHHHHHHH-TTCEEEEEESCCC-------CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred CCEEEEE-----CCCcHHHHHHHHHHHh-CCCEEEEEeCCCCcc-c-CCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence 4566664 3233444555555555 577776665442111 1 111000000111 11113446689999987654
Q ss_pred c
Q 040588 126 R 126 (252)
Q Consensus 126 y 126 (252)
.
T Consensus 73 ~ 73 (311)
T 3m2p_A 73 R 73 (311)
T ss_dssp C
T ss_pred C
Confidence 3
No 283
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=22.88 E-value=86 Score=25.98 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=25.1
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceE
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEG 79 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev 79 (252)
||++||+- +.++...+++.+.+.+++ .|+++
T Consensus 1 mki~ii~n-~~~~~~~~~~~l~~~l~~-~g~~v 31 (272)
T 2i2c_A 1 MKYMITSK-GDEKSDLLRLNMIAGFGE-YDMEY 31 (272)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHHTT-SSCEE
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHHHH-CCCEe
Confidence 58888876 677788899999999988 78765
No 284
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=22.86 E-value=3.2e+02 Score=24.78 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=34.3
Q ss_pred ccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 040588 115 HADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIG 190 (252)
Q Consensus 115 ~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~ 190 (252)
.+|.||+..|.. ..++..++.+.. .+ +|+. +...++ +... ....+.+.+...|+.+++.+
T Consensus 74 ~aDvVil~Vp~~-----~~v~~vl~~l~~-----~l~~g~i---IId~s~--~~~~-~~~~l~~~l~~~g~~~v~~p 134 (497)
T 2p4q_A 74 RPRKVMLLVKAG-----APVDALINQIVP-----LLEKGDI---IIDGGN--SHFP-DSNRRYEELKKKGILFVGSG 134 (497)
T ss_dssp SSCEEEECCCSS-----HHHHHHHHHHGG-----GCCTTCE---EEECSC--CCHH-HHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEcCCh-----HHHHHHHHHHHH-----hCCCCCE---EEECCC--CChh-HHHHHHHHHHHcCCceeCCC
Confidence 399999999973 346777766543 23 2442 333322 2222 33445566666788776543
No 285
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=22.85 E-value=71 Score=27.15 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=25.7
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|||+++.....|+... +..+++.+.+ .|.+|.++.-.
T Consensus 1 MrIl~~~~~~~Gh~~p-~~~la~~L~~-~Gh~V~~~~~~ 37 (384)
T 2p6p_A 1 MRILFVAAGSPATVFA-LAPLATAARN-AGHQVVMAANQ 37 (384)
T ss_dssp CEEEEECCSSHHHHHH-HHHHHHHHHH-TTCEEEEEECG
T ss_pred CEEEEEeCCccchHhH-HHHHHHHHHH-CCCEEEEEeCH
Confidence 6898875545677644 4467777777 78899887643
No 286
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=22.82 E-value=3.3e+02 Score=22.62 Aligned_cols=117 Identities=12% Similarity=0.117 Sum_probs=54.7
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhccccCCc-eEEEEECCC-CCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEe
Q 040588 45 GQLKIFIIFYSMYGHVEILARRMKKGVDSIDGV-EGVLYRVPE-TLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFG 122 (252)
Q Consensus 45 ~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~-ev~l~~l~~-~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~g 122 (252)
.||||.||= . |+ |...++..+.+ .|. +|.+++... .............. .... .+.+.++|.||+.
T Consensus 23 ~~~~I~iIG-~--G~---mG~~~A~~L~~-~G~~~V~~~dr~~~~~~~~~~~~~g~~~----~~~~-~e~~~~aDvVi~~ 90 (312)
T 3qsg_A 23 NAMKLGFIG-F--GE---AASAIASGLRQ-AGAIDMAAYDAASAESWRPRAEELGVSC----KASV-AEVAGECDVIFSL 90 (312)
T ss_dssp --CEEEEEC-C--SH---HHHHHHHHHHH-HSCCEEEEECSSCHHHHHHHHHHTTCEE----CSCH-HHHHHHCSEEEEC
T ss_pred CCCEEEEEC-c--cH---HHHHHHHHHHH-CCCCeEEEEcCCCCHHHHHHHHHCCCEE----eCCH-HHHHhcCCEEEEe
Confidence 467888873 2 32 33344444444 466 788877641 10001111111100 0011 3446789999999
Q ss_pred ccccCCCchHHHHHHHHhhhhhhhhccC-CCCcEEEEEeeCCCCCChHHHHHHHHHHHHHc--CcEEecCC
Q 040588 123 FPTRFGSMASQMKAFFDSTFHLWEQQRL-AGVPAGFFVSTGTQGGGQETTAWTAITQLAHH--GMVYVPIG 190 (252)
Q Consensus 123 sP~y~g~~~~~~k~fld~l~~~~~~~~l-~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~--G~~vv~~~ 190 (252)
.|.... . ..++.+.. .+ +++. +....+. .. .+...+...+... |..+++.+
T Consensus 91 vp~~~~--~----~~~~~l~~-----~l~~~~i---vvd~st~--~~-~~~~~~~~~~~~~~~g~~~vd~p 144 (312)
T 3qsg_A 91 VTAQAA--L----EVAQQAGP-----HLCEGAL---YADFTSC--SP-AVKRAIGDVISRHRPSAQYAAVA 144 (312)
T ss_dssp SCTTTH--H----HHHHHHGG-----GCCTTCE---EEECCCC--CH-HHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCchhH--H----HHHHhhHh-----hcCCCCE---EEEcCCC--CH-HHHHHHHHHHHhhcCCCeEEecc
Confidence 998542 1 23344332 23 3442 2222221 22 2445566666666 77776543
No 287
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=22.76 E-value=2.3e+02 Score=23.14 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=41.5
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhh-hccCeEEEec-
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDL-VHADGLLFGF- 123 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l-~~aD~II~gs- 123 (252)
++||+|+-+- |.+..=+-...+.+....|.+++++..... +- .....-... ++....++ ..+|+||+..
T Consensus 23 ~~~I~ill~~--gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~-~V--~~~~G~~i~----~d~~l~~~~~~yD~liVPGG 93 (253)
T 3ewn_A 23 DEQIAMLVYP--GMTVMDLVGPHCMFGSLMGAKIYIVAKSLD-PV--TSDAGLAIV----PTATFGTCPRDLTVLFAPGG 93 (253)
T ss_dssp CCEEEEECCT--TBCHHHHHHHHHHHTTSTTCEEEEEESSSS-CE--ECTTSCEEC----CSEETTTSCSSCSEEEECCB
T ss_pred CeEEEEEeCC--CCcHHHHHHHHHHHHhCCCCEEEEEeCCCC-eE--EcCCCCEEe----CCcCHHHcCCCCCEEEECCC
Confidence 4678777654 333333334455563226888888887542 10 000000000 00012222 2569999843
Q ss_pred c--ccCCCchHHHHHHHHhhh
Q 040588 124 P--TRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 124 P--~y~g~~~~~~k~fld~l~ 142 (252)
+ .........+..||.+..
T Consensus 94 ~~g~~~l~~~~~l~~~Lr~~~ 114 (253)
T 3ewn_A 94 TDGTLAAASDAETLAFMADRG 114 (253)
T ss_dssp SHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhhhccCHHHHHHHHHHH
Confidence 2 122233566777777653
No 288
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=22.51 E-value=1.7e+02 Score=26.43 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=28.1
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
++.++|.+.....+.+|+.|++.+++ .|+++++..+.
T Consensus 361 ~l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~v~i~~~~ 397 (528)
T 3ry3_A 361 KITLWYTSGDTTRRDLAQALRSMLKP-IGIDVDLKSGS 397 (528)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHGG-GTCEEEEEEEC
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 46666765444557899999999998 89999887643
No 289
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=22.45 E-value=74 Score=27.57 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=27.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
|||+|+-....|+...++ .+++.+++ .|.+|.++--.
T Consensus 1 MrIli~~~gt~Ghv~p~~-~La~~L~~-~Gh~V~v~~~~ 37 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLV-ALAARLRE-LGADARMCLPP 37 (404)
T ss_dssp -CEEEEEESSHHHHHHHH-HHHHHHHH-TTCCEEEEECG
T ss_pred CeEEEEeCCCCccHHHHH-HHHHHHHH-CCCeEEEEeCH
Confidence 689888666678887777 47777877 79999887643
No 290
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=22.40 E-value=50 Score=28.15 Aligned_cols=36 Identities=8% Similarity=0.207 Sum_probs=26.3
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 47 LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 47 ~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
|||+++..+..|+...++ .+++.+++ .|.+|.++..
T Consensus 2 MrIl~~~~~~~gh~~~~~-~la~~L~~-~GheV~v~~~ 37 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMV-PLCWALQA-SGHEVLIAAP 37 (391)
T ss_dssp CEEEEECCSCHHHHHTTH-HHHHHHHH-TTCEEEEEEC
T ss_pred cEEEEEcCCCcchhhhHH-HHHHHHHH-CCCEEEEecC
Confidence 799988877777765544 46666777 7999988763
No 291
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=22.32 E-value=1.2e+02 Score=24.63 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=27.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
.+||.+|+++...++..-.+.+.+.+++ .|.++....+.
T Consensus 133 ~~~I~~i~~~~~~~~~~r~~g~~~al~~-~gi~~~~~~~~ 171 (295)
T 3lft_A 133 VKTIGALYSSSEDNSKTQVEEFKAYAEK-AGLTVETFAVP 171 (295)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHH-TTCEEEEEEES
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 4689999987655555566777777777 78776554443
No 292
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1
Probab=22.11 E-value=84 Score=27.31 Aligned_cols=55 Identities=20% Similarity=0.058 Sum_probs=35.6
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccc
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPT 125 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~ 125 (252)
++.||+.|..| ..+|+.|++.+.. .+.++..+. . +.+...+.+.++|++||...+
T Consensus 10 ~~Aiia~T~~G--~~lA~rl~~~l~~-~~~~~~~~~--~------------------~~~~~~~~f~~~d~iIfI~A~ 64 (336)
T 3eeq_A 10 GICIISASEDA--FSAGETIKEKLKS-FEIPVVHYR--Y------------------KDAEIETIWKCYDAIVFVMAL 64 (336)
T ss_dssp CEEEEECSHHH--HHHHHHHHHHHHH-TTCCEEEEE--G------------------GGCCHHHHTTTCSEEEEESCH
T ss_pred ceEEEEEChHH--HHHHHHHHHhcCc-CCceEEecC--C------------------HHHHHHHHhcCCCeEEEEeCh
Confidence 78899988777 5688888888863 234443221 1 111224667889999988765
No 293
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=22.04 E-value=46 Score=25.49 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=17.3
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHHHhcc
Q 040588 43 TTGQLKIFIIFYSMYGHVEILARRMKKGVD 72 (252)
Q Consensus 43 ~~~~~kIlIIy~S~~GnT~~la~~i~~~l~ 72 (252)
|..|+|||.|+...... ..||+++.+.+.
T Consensus 1 ~~~m~~vLFVC~gN~cR-SpmAE~~~~~~~ 29 (161)
T 3jvi_A 1 GPGSMKLLFVCLGNICR-SPAAEAVMKKVI 29 (161)
T ss_dssp ---CEEEEEEESSSSSH-HHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCchhH-HHHHHHHHHHHH
Confidence 34578999998332222 468888877654
No 294
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=22.04 E-value=1.6e+02 Score=28.22 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=19.5
Q ss_pred CceEEEE-EeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFII-FYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlII-y~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
..+|+|+ |+| .+|+.+++.+ ++ .|+.++++...
T Consensus 29 ~~~I~VLDfg~--q~~~liar~l----re-~Gv~~~ivp~~ 62 (697)
T 2vxo_A 29 EGAVVILDAGA--QYGKVIDRRV----RE-LFVQSEIFPLE 62 (697)
T ss_dssp CCCEEEEEEC----CHHHHHHHH----HH-TTCCEEEEETT
T ss_pred CCEEEEEECCC--chHHHHHHHH----HH-CCCEEEEEECC
Confidence 3578888 555 3444555444 44 57788888764
No 295
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=21.91 E-value=78 Score=26.97 Aligned_cols=34 Identities=15% Similarity=-0.113 Sum_probs=23.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
|+||+|+.+. .++..+++.+++ .|.++..++...
T Consensus 1 M~~Ililg~g------~~~~~~~~a~~~-~G~~v~~~~~~~ 34 (365)
T 2z04_A 1 MLTVGILGGG------QLGWMTILEGRK-LGFKFHVLEDKE 34 (365)
T ss_dssp -CEEEEECCS------HHHHHHHHHHGG-GTCEEEEECSSS
T ss_pred CCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 6789888643 456677777777 788887777543
No 296
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=21.72 E-value=1.7e+02 Score=25.13 Aligned_cols=34 Identities=21% Similarity=0.050 Sum_probs=22.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
.++|+||-+.. ++..+++.+++ .|.++.+++...
T Consensus 14 ~k~IlIlG~G~------~g~~la~aa~~-~G~~vi~~d~~~ 47 (389)
T 3q2o_A 14 GKTIGIIGGGQ------LGRMMALAAKE-MGYKIAVLDPTK 47 (389)
T ss_dssp TSEEEEECCSH------HHHHHHHHHHH-TTCEEEEEESST
T ss_pred CCEEEEECCCH------HHHHHHHHHHH-cCCEEEEEeCCC
Confidence 35777775433 45566666666 788888887654
No 297
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=21.70 E-value=71 Score=20.17 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=18.2
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhcccc-CCceEEEEECCC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSI-DGVEGVLYRVPE 86 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~-~G~ev~l~~l~~ 86 (252)
+++.+|.+.-+.++.+...+.+-.++. .++.+..+++.+
T Consensus 5 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 44 (85)
T 1fo5_A 5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME 44 (85)
T ss_dssp EEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCC
Confidence 334434333466655555444433321 145555666544
No 298
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=21.62 E-value=55 Score=27.92 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=27.4
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
.||||++-+...|+..-+. .+++.|.+ .|.+|.++.-
T Consensus 22 ~MRIL~~~~p~~GHv~P~l-~LA~~L~~-rGh~Vt~~t~ 58 (400)
T 4amg_A 22 SMRALFITSPGLSHILPTV-PLAQALRA-LGHEVRYATG 58 (400)
T ss_dssp CCEEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEEC
T ss_pred CCeEEEECCCchhHHHHHH-HHHHHHHH-CCCEEEEEeC
Confidence 4799987666678876555 56677777 7999988764
No 299
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=21.61 E-value=1.1e+02 Score=23.38 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=42.4
Q ss_pred CCceEEEEEeCC-----------chhH--HHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchh
Q 040588 45 GQLKIFIIFYSM-----------YGHV--EILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVD 111 (252)
Q Consensus 45 ~~~kIlIIy~S~-----------~GnT--~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~ 111 (252)
.|+||+|+.+-. +|++ +.+.+.+.+.+.+ .|++++++.-... .+.. ..+ .+
T Consensus 3 ~m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~v~~~QSN~E--geLI------------d~I-h~ 66 (151)
T 3u80_A 3 AMTKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGKD-LGLEVEVRQTDDE--AEMV------------RWM-HQ 66 (151)
T ss_dssp -CEEEEEEECSCC------------CHHHHHHHHHHHHHHHH-TTEEEEEEECSCH--HHHH------------HHH-HH
T ss_pred CCCEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCCH--HHHH------------HHH-HH
Confidence 466899999762 5653 3445556666666 7888888775532 0000 011 22
Q ss_pred hhhccCeEEEeccccCCCchHHHHHH
Q 040588 112 DLVHADGLLFGFPTRFGSMASQMKAF 137 (252)
Q Consensus 112 ~l~~aD~II~gsP~y~g~~~~~~k~f 137 (252)
...++|+|||=---|-.. +-.+...
T Consensus 67 a~~~~dgiiINpgA~THt-SvAlrDA 91 (151)
T 3u80_A 67 AADEKTPVVMNPAAFTHY-SYALADA 91 (151)
T ss_dssp HHHHTCCEEEECTTCCSC-CHHHHHH
T ss_pred hhhcCcEEEECcchhhhh-hHHHHHH
Confidence 345689999887766422 2245555
No 300
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=21.61 E-value=72 Score=27.97 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=21.2
Q ss_pred ccccCCCCCCCCceEEEEEeCCchhHHHHHHHHHHhccccC-CceEEEE
Q 040588 35 QNQLTTTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSID-GVEGVLY 82 (252)
Q Consensus 35 ~~~~~~~~~~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~-G~ev~l~ 82 (252)
.|-+-+++-+.||||++|.+++.+.- ++ ..+.+.+++.. ++++.++
T Consensus 16 ~~~~~~~~~m~~~kI~~v~Gtr~~~~-~~-a~li~~l~~~~~~~~~~~~ 62 (403)
T 3ot5_A 16 ENLYFQSNAMAKIKVMSIFGTRPEAI-KM-APLVLALEKEPETFESTVV 62 (403)
T ss_dssp ----------CCEEEEEEECSHHHHH-HH-HHHHHHHHTCTTTEEEEEE
T ss_pred chhhhhhhccccceEEEEEecChhHH-HH-HHHHHHHHhCCCCCcEEEE
Confidence 44455554455679999999976542 23 33445555412 4565544
No 301
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=21.50 E-value=1.4e+02 Score=24.36 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=27.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
.+||.+|+++...++....+.+.+.+++ .|.++....+.
T Consensus 140 ~~~I~~i~~~~~~~~~~r~~g~~~al~~-~gi~~~~~~~~ 178 (302)
T 2qh8_A 140 VKSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEATAL 178 (302)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEECS
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 4689999987655566666777788877 78776655443
No 302
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=21.39 E-value=71 Score=27.57 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=24.5
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccC-CceEEEEECCCCC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSID-GVEGVLYRVPETL 88 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~-G~ev~l~~l~~~~ 88 (252)
+++||- +|.+-..|...++.+++ . |+++++++++...
T Consensus 221 dv~iia---~G~~~~~a~~Aa~~L~~-~~Gi~v~vi~~~~l~ 258 (342)
T 2bfd_B 221 DVTLVA---WGTQVHVIREVASMAKE-KLGVSCEVIDLRTII 258 (342)
T ss_dssp SEEEEE---CTTHHHHHHHHHHHHHH-HHCCCEEEEECCEEE
T ss_pred CEEEEE---ECHHHHHHHHHHHHHHh-hcCCCEEEEeeeecC
Confidence 555544 45555566666666665 6 8889999998653
No 303
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=21.28 E-value=1.9e+02 Score=23.41 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=13.3
Q ss_pred hhhh-ccCeEEEecccc
Q 040588 111 DDLV-HADGLLFGFPTR 126 (252)
Q Consensus 111 ~~l~-~aD~II~gsP~y 126 (252)
+.+. ++|.||++.|..
T Consensus 57 ~~~~~~aDvVilavp~~ 73 (281)
T 2g5c_A 57 KVEDFSPDFVMLSSPVR 73 (281)
T ss_dssp GGGGTCCSEEEECSCHH
T ss_pred HHhcCCCCEEEEcCCHH
Confidence 4456 899999999986
No 304
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=21.27 E-value=62 Score=27.35 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=27.7
Q ss_pred EEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 50 FIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 50 lIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
+||-+++.|.|..+++.+++.+.+..|..+.+.+-.
T Consensus 12 ~ivp~~~GG~~D~~aR~la~~l~~~lg~~vvV~n~~ 47 (301)
T 2qpq_A 12 IIVTFPPGGGTDMLARLIGNYLTESLGQTAVVENRP 47 (301)
T ss_dssp EEESSCTTSHHHHHHHHHHHHHHHGGGSCEEEEECC
T ss_pred EEEccCCCcHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 455678899999999999999876457677776654
No 305
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=21.21 E-value=72 Score=28.37 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=29.6
Q ss_pred CceEEEEEeCCch--hHHHHHHHHHHhcccc-CCceEEEEECCC
Q 040588 46 QLKIFIIFYSMYG--HVEILARRMKKGVDSI-DGVEGVLYRVPE 86 (252)
Q Consensus 46 ~~kIlIIy~S~~G--nT~~la~~i~~~l~~~-~G~ev~l~~l~~ 86 (252)
+|||+|.-.|=.| +...++++|.+++++. .++++..+.+.|
T Consensus 3 ~MkiviApDsFKgsLsA~eaa~ai~~G~~~~~p~a~~~~~P~AD 46 (383)
T 3cwc_A 3 AMKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLAD 46 (383)
T ss_dssp CCEEEECCCCBTTSCCHHHHHHHHHHHHHTTCTTSEEEECCCCC
T ss_pred CceEEEEecCCCCCcCHHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 4899999988544 4788999999999762 244555555554
No 306
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=21.15 E-value=1.3e+02 Score=26.55 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 040588 222 PTETELALAEHQGKYMAAIV 241 (252)
Q Consensus 222 pde~~l~~a~~~g~~la~~~ 241 (252)
.+++..++++++++++++.+
T Consensus 258 l~~~~~~~~~~~a~~i~~~l 277 (419)
T 4e4t_A 258 ADTARVEEAQQAAVRIADTL 277 (419)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHC
Confidence 46777888888888887765
No 307
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=21.11 E-value=1.1e+02 Score=22.81 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEeccccCCCchHHHHHHHH
Q 040588 60 VEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFD 139 (252)
Q Consensus 60 T~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP~y~g~~~~~~k~fld 139 (252)
++.+++.+++.+.+..+.++.++++++.. .-+|.+||+|..= +.++++..+
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~s-------------------------~~~DyfVIaTg~S----~rqv~Aiad 53 (130)
T 2id1_A 3 IQEISKLAIEALEDIKGKDIIELDTSKLT-------------------------SLFQRMIVATGDS----NRQVKALAN 53 (130)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEGGGTC-------------------------SSCSEEEEEECSS----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCCC-------------------------cccCEEEEEEcCC----HHHHHHHHH
Confidence 56788888888877566788999987531 2368999998653 345555555
Q ss_pred hhh
Q 040588 140 STF 142 (252)
Q Consensus 140 ~l~ 142 (252)
.+.
T Consensus 54 ~v~ 56 (130)
T 2id1_A 54 SVQ 56 (130)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 308
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=21.10 E-value=60 Score=25.22 Aligned_cols=25 Identities=8% Similarity=0.360 Sum_probs=18.1
Q ss_pred CCCceEEEEEeCCchhH--HHHHHHHHHhc
Q 040588 44 TGQLKIFIIFYSMYGHV--EILARRMKKGV 71 (252)
Q Consensus 44 ~~~~kIlIIy~S~~GnT--~~la~~i~~~l 71 (252)
..|+|||.|+ +||+ .-||+.|.+.+
T Consensus 16 ~~M~kVLFVC---tGNiCRSpmAE~i~r~~ 42 (173)
T 4etm_A 16 GSMISVLFVC---LGNICRSPMAEAIFRDL 42 (173)
T ss_dssp SSCEEEEEEE---SSSSSHHHHHHHHHHHH
T ss_pred CCccEEEEEe---CCcchhhHHHHHHHHHH
Confidence 3478999999 5553 46888887665
No 309
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=20.99 E-value=79 Score=24.33 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=44.3
Q ss_pred CceEEEEEeCC-----------chhH--HHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhh
Q 040588 46 QLKIFIIFYSM-----------YGHV--EILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDD 112 (252)
Q Consensus 46 ~~kIlIIy~S~-----------~GnT--~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~ 112 (252)
|+||+|+.+-. +|++ +.+.+.+.+.+.+ .|++++++.-... .+.. ..+ .+.
T Consensus 7 m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~~~~~QSN~E--geLI------------d~I-h~a 70 (153)
T 3lwz_A 7 KFHILLLNGPNLNLLGTREPEKYGYTTLAEIVSQLEIQAQG-MDVALSHLQSNAE--HALI------------DSI-HQA 70 (153)
T ss_dssp CEEEEEEECTTGGGTTTSSHHHHCCCCHHHHHHHHHHHHHH-TTEEEEEEECSCH--HHHH------------HHH-HHH
T ss_pred cCeEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCCH--HHHH------------HHH-HHh
Confidence 56899999763 4542 4455666666666 7888888775532 0000 001 223
Q ss_pred hhccCeEEEeccccC-CCchHHHHHHHHh
Q 040588 113 LVHADGLLFGFPTRF-GSMASQMKAFFDS 140 (252)
Q Consensus 113 l~~aD~II~gsP~y~-g~~~~~~k~fld~ 140 (252)
..++|+|||=---|- .++ .+...|..
T Consensus 71 ~~~~dgiiINpgA~THtSv--AlrDAl~~ 97 (153)
T 3lwz_A 71 RGNTDFILINPAAFTHTSV--ALRDALLG 97 (153)
T ss_dssp TTTCSEEEEECGGGGGTCH--HHHHHHHH
T ss_pred hhcCceEEEccccceechH--HHHHHHHh
Confidence 456899998776664 333 34544443
No 310
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=20.91 E-value=4.8e+02 Score=23.83 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=40.2
Q ss_pred hhccCeEEEeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEec
Q 040588 113 LVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVP 188 (252)
Q Consensus 113 l~~aD~II~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~ 188 (252)
+.....||++|+.- |..-..+..+...... ...+..+-..+|+++.++ |.+.....+...+...|..++.
T Consensus 303 ~~~~~~vi~~tg~~-ge~~~~l~ria~~~h~---~~~~~~~~~vi~s~~~~~--G~~~~~~~~~~~l~~~g~~v~~ 372 (562)
T 3bk2_A 303 LPDHQVLILATGSQ-GQPMSVLHRLAFEGHA---KMAIKPGDTVILSSSPIP--GNEEAVNRVINRLYALGAYVLY 372 (562)
T ss_dssp SCGGGEEEEECCTT-SCSHHHHHHHHTTCCS---SCCCCTTCEEEECSCCCT--TCHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCCCEEEEEcCCC-chhHHHHHhhhhcccc---cccCCCCCEEEEECCCCC--CCeEehhhhcCceeeCCCEEEE
Confidence 34557899999873 4433334433321100 013345567778877664 3344556667777788998875
No 311
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=20.60 E-value=1.5e+02 Score=25.29 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=29.0
Q ss_pred CCceEEEEEeCCch---hHHHHHHHHHHhccccCCceEEEEECCC
Q 040588 45 GQLKIFIIFYSMYG---HVEILARRMKKGVDSIDGVEGVLYRVPE 86 (252)
Q Consensus 45 ~~~kIlIIy~S~~G---nT~~la~~i~~~l~~~~G~ev~l~~l~~ 86 (252)
..+||+|||+-.++ -+-.=+..+.+.|++ .|.++..+.+..
T Consensus 2 ~kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~-~gy~v~~i~i~~ 45 (357)
T 4fu0_A 2 QNKKIAVIFGGNSTEYEVSLQSASAVFENINT-NKFDIIPIGITR 45 (357)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CCCEEEEEECCCccchHHHHHHHHHHHHHHhH-hCCEEEEEEEeC
Confidence 45789999985432 223336778889988 899988887653
No 312
>1f35_A Olfactory marker protein; beta, structural genomics, PSI, protein structure initiative northeast structural genomics consortium, NESG, signaling P; 2.30A {Mus musculus} SCOP: b.94.1.1 PDB: 1job_A 1jod_A 1jyt_A 1zri_A
Probab=20.49 E-value=63 Score=24.27 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 040588 228 ALAEHQGKYMAAIVKK 243 (252)
Q Consensus 228 ~~a~~~g~~la~~~~~ 243 (252)
+.|.+||+|||++++-
T Consensus 119 ADaqEFGERiaeLAki 134 (162)
T 1f35_A 119 ADALEFGERLSDLAKI 134 (162)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4577999999999874
No 313
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=20.45 E-value=1.4e+02 Score=21.21 Aligned_cols=57 Identities=11% Similarity=0.164 Sum_probs=21.8
Q ss_pred CCCCCccccccccCCCCCCCCceEEEEEeCC-chhHHHHHHHHHHhccccCCceEEEEEC
Q 040588 26 PDGVSSNLDQNQLTTTSTTGQLKIFIIFYSM-YGHVEILARRMKKGVDSIDGVEGVLYRV 84 (252)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~kIlIIy~S~-~GnT~~la~~i~~~l~~~~G~ev~l~~l 84 (252)
|.|--..++..++......... ++|.|++. .+.++.+...+.+-.++ ..-.+.++.+
T Consensus 31 ~~~~v~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~-~~~~v~~~~v 88 (140)
T 1v98_A 31 PLPWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARD-HAGRLKVVKV 88 (140)
T ss_dssp ------------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHH-TTTTEEEEEE
T ss_pred CCCccccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHH-ccCceEEEEE
Confidence 3344445566655554333333 77666666 57888877766554443 2213444444
No 314
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=20.35 E-value=1.5e+02 Score=23.77 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=26.6
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECC
Q 040588 48 KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVP 85 (252)
Q Consensus 48 kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~ 85 (252)
++.+++. +...+.+|+.|++.+++ .|+++++..+.
T Consensus 130 ~l~~~~~--~~~~~~~a~~iq~~l~~-iGI~v~i~~~~ 164 (259)
T 3pam_A 130 QFEIMTQ--SLEEEKVALAFQSNLSR-LGIHAEIRTVD 164 (259)
T ss_dssp EEEEEES--SHHHHHHHHHHHHHHHT-TTCEEEEEECC
T ss_pred EEEEEeC--CchHHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 4445553 35667899999999999 89999887764
No 315
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=20.31 E-value=49 Score=26.08 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=22.5
Q ss_pred hhccCeEEEec-cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEe
Q 040588 113 LVHADGLLFGF-PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVS 160 (252)
Q Consensus 113 l~~aD~II~gs-P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s 160 (252)
..++|.||+.. +...... +.+..||.+... ++|.++.+++
T Consensus 69 ~~~~D~livpGG~~~~~~~-~~l~~~l~~~~~-------~g~~iaaIC~ 109 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-PELDRLLNDCAA-------HGMALGGLWN 109 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-TTHHHHHHHHHH-------HTCEEEEETT
T ss_pred CCCCCEEEEeCCCchhhcc-HHHHHHHHHHHh-------hCCEEEEECH
Confidence 56799999843 3222222 567777766532 3555554443
No 316
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=20.26 E-value=77 Score=25.61 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=20.4
Q ss_pred CceEEEEEeCCchh---HHHHHHHHHHhccccCCc
Q 040588 46 QLKIFIIFYSMYGH---VEILARRMKKGVDSIDGV 77 (252)
Q Consensus 46 ~~kIlIIy~S~~Gn---T~~la~~i~~~l~~~~G~ 77 (252)
|++|.|+.+|..++ -...|+.+.+.+.+ .|.
T Consensus 13 m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~-~G~ 46 (215)
T 2a33_A 13 FRRICVFCGSSQGKKSSYQDAAVDLGNELVS-RNI 46 (215)
T ss_dssp CSEEEEECCSSCCSSHHHHHHHHHHHHHHHH-TTC
T ss_pred CCeEEEEECCCCCCchHHHHHHHHHHHHHHH-CCC
Confidence 45577766997653 24578888887776 553
No 317
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=20.23 E-value=95 Score=23.27 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=41.6
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHHhcc-ccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEecc
Q 040588 47 LKIFIIFYSM-YGHVEILARRMKKGVD-SIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFP 124 (252)
Q Consensus 47 ~kIlIIy~S~-~GnT~~la~~i~~~l~-~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gsP 124 (252)
.+++++++.+ +|.|. +++.++..+. . .|..+..+...+... ....... ......+ ...+.+.+.||+==|
T Consensus 38 g~~~~l~G~~G~GKTt-L~~~i~~~~~~~-~g~~~~~~~~~~~~~-~~~~~~~----~~~~~~~-~~~~~~~~llilDE~ 109 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTH-LAVATLKAIYEK-KGIRGYFFDTKDLIF-RLKHLMD----EGKDTKF-LKTVLNSPVLVLDDL 109 (180)
T ss_dssp CCEEEECCSSSSSHHH-HHHHHHHHHHHH-SCCCCCEEEHHHHHH-HHHHHHH----HTCCSHH-HHHHHTCSEEEEETC
T ss_pred CCEEEEECCCCCCHHH-HHHHHHHHHHHH-cCCeEEEEEHHHHHH-HHHHHhc----CchHHHH-HHHhcCCCEEEEeCC
Confidence 4678888875 78885 7777777764 3 465555555443210 0000000 0011122 466778999999988
Q ss_pred ccCCC
Q 040588 125 TRFGS 129 (252)
Q Consensus 125 ~y~g~ 129 (252)
...+.
T Consensus 110 ~~~~~ 114 (180)
T 3ec2_A 110 GSERL 114 (180)
T ss_dssp SSSCC
T ss_pred CCCcC
Confidence 75443
No 318
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=20.13 E-value=79 Score=25.43 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=37.4
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhccccCCc----eEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEE
Q 040588 46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGV----EGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLF 121 (252)
Q Consensus 46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~----ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~ 121 (252)
+|||.||= .|+ |...++..+.+ .|. ++.+++................. .... .+.+.++|.||+
T Consensus 2 ~~~i~iIG---~G~---mG~~~a~~l~~-~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~----~~~~-~e~~~~aDvVil 69 (247)
T 3gt0_A 2 DKQIGFIG---CGN---MGMAMIGGMIN-KNIVSSNQIICSDLNTANLKNASEKYGLTT----TTDN-NEVAKNADILIL 69 (247)
T ss_dssp CCCEEEEC---CSH---HHHHHHHHHHH-TTSSCGGGEEEECSCHHHHHHHHHHHCCEE----CSCH-HHHHHHCSEEEE
T ss_pred CCeEEEEC---ccH---HHHHHHHHHHh-CCCCCCCeEEEEeCCHHHHHHHHHHhCCEE----eCCh-HHHHHhCCEEEE
Confidence 46777763 343 44455555554 565 77777654211011111111110 0011 344678999999
Q ss_pred eccccCCCchHHHHHHHHhhh
Q 040588 122 GFPTRFGSMASQMKAFFDSTF 142 (252)
Q Consensus 122 gsP~y~g~~~~~~k~fld~l~ 142 (252)
+.|.+ .+..+++.+.
T Consensus 70 av~~~------~~~~v~~~l~ 84 (247)
T 3gt0_A 70 SIKPD------LYASIINEIK 84 (247)
T ss_dssp CSCTT------THHHHC---C
T ss_pred EeCHH------HHHHHHHHHH
Confidence 99754 2445555443
No 319
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=20.03 E-value=23 Score=26.43 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=27.6
Q ss_pred ccccccccCCCCCCCCceEEEEEeCCchhHHHH
Q 040588 31 SNLDQNQLTTTSTTGQLKIFIIFYSMYGHVEIL 63 (252)
Q Consensus 31 ~~~~~~~~~~~~~~~~~kIlIIy~S~~GnT~~l 63 (252)
-+++|.+|.|-.+....+|+|+.+...|.+-.|
T Consensus 59 v~v~q~~LETViP~~g~~V~Iv~G~~rG~~g~L 91 (127)
T 2ckk_A 59 LKLDQTHLETVIPAPGKRILVLNGGYRGNEGTL 91 (127)
T ss_dssp EEEEGGGEEECCCCTTCEEEECSSTTTTCEEEE
T ss_pred EEEchHHcEEecCCCCCEEEEEecccCCcEEEE
Confidence 489999999999988889999998877765433
Done!