BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040591
(514 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94248|MDN1_SCHPO Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mdn1 PE=1 SV=1
Length = 4717
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 74 VVVIKPDRPHDVPQQSPSLIP-----------KSSLTETQATEFEPSCNLSSKSTVTNRL 122
++V PD+P D P+L+P +S E+Q E S N ++V RL
Sbjct: 2739 LLVYVPDKPFD-----PALLPLLTVESLRHYLESLYKESQILEIAESLNSGKVNSVMRRL 2793
Query: 123 VNTQLANTLISSIFATFSSFEASYLQLQTAHVPFVEE 159
V+T+++NT SSF Y L + VP E
Sbjct: 2794 VSTEISNTP-----NIDSSFSTVYRSLNESIVPLYSE 2825
>sp|Q9ZLT1|CAGA_HELPJ Cytotoxicity-associated immunodominant antigen OS=Helicobacter
pylori (strain J99) GN=cagA PE=4 SV=1
Length = 1167
Score = 33.1 bits (74), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 97 SLTETQATEFEPSCNLSSKSTVTNRLVNTQLANTLISSIFATFSSFEASYLQLQTAHVPF 156
SL + + E + + NL SKS N++ AN+ IFA + EA+ + A
Sbjct: 621 SLKKRERLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINK-EAN----RDARAIA 675
Query: 157 VEENIKAADRALVSHLQRLS-DFKQFYKDV-----CKNPDFIGAEEDL 198
+N+K R L L+ ++ D K F K KN DF AEE L
Sbjct: 676 YAQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETL 723
>sp|P55980|CAGA_HELPY Cytotoxicity-associated immunodominant antigen OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=cagA PE=1 SV=1
Length = 1186
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 97 SLTETQATEFEPSCNLSSKSTVTNRLVNTQLANTLISSIFATFSSFEASYLQLQTAHVPF 156
SL + + E E L SKS N++ AN+ IFA + EA+ + A
Sbjct: 622 SLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINK-EAN----RDARAIA 676
Query: 157 VEENIKAADRALVSHLQRLS-DFKQFYKDV-----CKNPDFIGAEEDL 198
+N+K R L L+++S D K F K KN DF AEE L
Sbjct: 677 YTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETL 724
>sp|Q99PL5|RRBP1_MOUSE Ribosome-binding protein 1 OS=Mus musculus GN=Rrbp1 PE=2 SV=2
Length = 1605
Score = 32.7 bits (73), Expect = 6.3, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 22/122 (18%)
Query: 137 ATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCK-NPDFIGAE 195
A ++FE LQLQ +H K ++ AL L+ ++ +++C+
Sbjct: 1060 AKAATFEKQVLQLQASH--------KESEEALQKRLEEVT------RELCRAQTSHANLR 1105
Query: 196 EDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSG 255
D + RV E SKL++ E+ E+ +K ++++L QL E NS+L+
Sbjct: 1106 ADAEKAQEQQQRVAELHSKLQSSEV-------EVKSKCEELSSLHGQLKEARAENSQLTE 1158
Query: 256 KL 257
++
Sbjct: 1159 RI 1160
>sp|Q9VDE6|EXOC6_DROME Exocyst complex component 6 OS=Drosophila melanogaster GN=sec15
PE=1 SV=1
Length = 766
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 17/186 (9%)
Query: 19 AKPPQISEMFQKFAIAFKAKTFEFFADEDDHDHDPSDSEGFTLLDSAEDFITDQKVVVIK 78
+PP I+ F I++ TF+ FA + H + F + +K+ I
Sbjct: 591 VEPPGIASAFITDMISYLKSTFDSFAFKLPHIAQAACRRTFEHI--------AEKIYSIM 642
Query: 79 PDRPHDVPQQSPSLIPKSSLTETQATEF---EPSCNLSSKSTVTNRLVNTQLANTLI--- 132
D DV Q S + + +L Q F EP L L N QL + LI
Sbjct: 643 YDE--DVKQISTGALTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLILEE 700
Query: 133 -SSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDF 191
S+ F + E Y +Q + + E I+ AD+ + L R +D K+ + V K
Sbjct: 701 WSTYFHDYGKQENRYHLVQPQSIIVILEKIREADKKPIFSLVRKNDKKKLLETVLKQLKH 760
Query: 192 IGAEED 197
I ++
Sbjct: 761 IADRQN 766
>sp|O89019|INVS_MOUSE Inversin OS=Mus musculus GN=Invs PE=1 SV=2
Length = 1062
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 36/220 (16%)
Query: 176 SDFKQFYKDVCKNPDFIGAEEDLAIGSCLE-HRVQENQSKLRTLEIVSNRLQEEIDAKDS 234
S KQ Y+D+C +P+ G G C+ H + Q R L I R ++E+ + +
Sbjct: 860 SGCKQLYEDICASPE-TGVAHGPPPGQCMNIHLLPVEQ---RLLIIQRERSRKELFRRKN 915
Query: 235 QVAALRKQLGEIHKCNSKLSGKLSNNLSSSFDVLLTVRVFDSLLHDVCRA--AHKFTKIL 292
+ AA+ ++ ++ LS L + +VL +V +LL V R KF K +
Sbjct: 916 KAAAVIQRAWRSYQLRKHLSRLLHLKQLGAREVLRCTQVCTALLLQVWRKELELKFPKSI 975
Query: 293 IDLMKKAGWDLDLAANSVYRDINYAKKGHNQYALLSYVCLGMFRGFDLEGFGLVENEVAC 352
SV R KG + + L G EG G
Sbjct: 976 ----------------SVSRTSKSPSKGSSATKYARHSVLRQIYGCSQEGKG-------- 1011
Query: 353 NGHDMDSSKASSSMKILLELASSNPLEMISRNRNCEFSRF 392
H + SSKA + +L L+S N L+ I + + +F
Sbjct: 1012 -HHPIKSSKAPA----VLHLSSVNSLQSIHLDNSGRSKKF 1046
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,540,285
Number of Sequences: 539616
Number of extensions: 7059623
Number of successful extensions: 21205
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 21156
Number of HSP's gapped (non-prelim): 105
length of query: 514
length of database: 191,569,459
effective HSP length: 122
effective length of query: 392
effective length of database: 125,736,307
effective search space: 49288632344
effective search space used: 49288632344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)