Query 040591
Match_columns 514
No_of_seqs 119 out of 137
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04859 DUF641: Plant protein 100.0 1.1E-44 2.5E-49 327.8 14.0 129 121-257 3-131 (131)
2 PF01025 GrpE: GrpE; InterPro 90.2 0.33 7.1E-06 45.1 3.9 53 453-506 109-162 (165)
3 PF04102 SlyX: SlyX; InterPro 84.7 3.6 7.8E-05 33.9 6.4 52 204-255 2-53 (69)
4 PRK09039 hypothetical protein; 84.3 11 0.00023 40.1 11.3 64 173-248 123-186 (343)
5 COG0576 GrpE Molecular chapero 82.3 1.3 2.9E-05 43.3 3.5 49 453-502 135-183 (193)
6 PRK10869 recombination and rep 80.6 20 0.00043 40.4 12.3 26 276-301 362-388 (553)
7 PF10205 KLRAQ: Predicted coil 80.5 3.1 6.8E-05 37.3 4.8 55 204-258 10-64 (102)
8 cd00446 GrpE GrpE is the adeni 79.1 2.1 4.6E-05 39.1 3.5 49 453-502 83-131 (137)
9 PRK14150 heat shock protein Gr 79.0 2.1 4.6E-05 42.0 3.6 54 454-508 138-192 (193)
10 PRK14151 heat shock protein Gr 77.4 2.8 6.1E-05 40.6 4.0 55 453-508 119-174 (176)
11 COG5185 HEC1 Protein involved 77.0 18 0.00039 40.4 10.2 44 208-251 318-361 (622)
12 PRK11448 hsdR type I restricti 76.6 21 0.00045 43.7 11.6 108 124-246 101-210 (1123)
13 PRK14140 heat shock protein Gr 76.1 2.8 6.1E-05 41.3 3.6 48 460-507 141-189 (191)
14 PF10211 Ax_dynein_light: Axon 74.8 39 0.00085 33.0 11.1 54 128-182 82-136 (189)
15 PF12329 TMF_DNA_bd: TATA elem 74.8 6.2 0.00014 33.1 4.8 55 204-258 17-71 (74)
16 PF07106 TBPIP: Tat binding pr 74.2 11 0.00024 35.5 7.0 38 146-184 59-97 (169)
17 PF08317 Spc7: Spc7 kinetochor 74.2 31 0.00067 36.1 10.8 121 128-257 147-267 (325)
18 COG0497 RecN ATPase involved i 74.0 15 0.00033 41.7 8.9 75 139-229 268-351 (557)
19 PRK14158 heat shock protein Gr 73.6 4 8.8E-05 40.3 4.0 53 455-507 139-192 (194)
20 PRK00295 hypothetical protein; 73.6 11 0.00023 31.2 5.9 51 204-254 3-53 (68)
21 PRK14145 heat shock protein Gr 73.5 3.8 8.2E-05 40.5 3.7 47 461-507 147-194 (196)
22 PRK14144 heat shock protein Gr 73.5 3.7 8E-05 40.7 3.7 54 454-508 143-197 (199)
23 PRK04325 hypothetical protein; 73.0 12 0.00025 31.5 6.1 51 204-254 7-57 (74)
24 PRK02793 phi X174 lysis protei 72.7 12 0.00027 31.2 6.1 51 204-254 6-56 (72)
25 PRK14148 heat shock protein Gr 72.6 4.1 8.8E-05 40.3 3.7 53 454-507 139-192 (195)
26 PRK04406 hypothetical protein; 72.5 12 0.00027 31.5 6.1 51 204-254 9-59 (75)
27 PRK14161 heat shock protein Gr 72.0 4.8 0.0001 39.2 4.0 55 454-508 120-175 (178)
28 PRK14154 heat shock protein Gr 71.9 5 0.00011 40.0 4.2 54 454-507 152-206 (208)
29 PRK14147 heat shock protein Gr 71.7 4 8.6E-05 39.5 3.4 53 454-507 115-168 (172)
30 PRK00736 hypothetical protein; 71.5 14 0.00029 30.7 6.0 51 204-254 3-53 (68)
31 PRK14141 heat shock protein Gr 70.8 4.4 9.6E-05 40.4 3.5 55 454-509 136-191 (209)
32 PRK14160 heat shock protein Gr 70.3 4.8 0.0001 40.3 3.7 45 462-507 164-209 (211)
33 PF08614 ATG16: Autophagy prot 69.4 6.4 0.00014 38.1 4.2 120 133-257 27-167 (194)
34 smart00787 Spc7 Spc7 kinetocho 69.4 45 0.00097 35.2 10.7 123 126-259 140-264 (312)
35 PRK10325 heat shock protein Gr 69.3 4.9 0.00011 39.6 3.5 55 454-509 139-194 (197)
36 COG4026 Uncharacterized protei 69.1 13 0.00028 38.0 6.4 101 129-258 72-187 (290)
37 PRK00846 hypothetical protein; 68.8 16 0.00035 31.3 6.0 52 203-254 10-61 (77)
38 PRK02119 hypothetical protein; 67.8 18 0.00039 30.3 6.1 51 204-254 7-57 (73)
39 PF15290 Syntaphilin: Golgi-lo 67.6 21 0.00046 37.4 7.7 81 206-302 61-142 (305)
40 PRK14155 heat shock protein Gr 67.4 7.3 0.00016 38.8 4.3 57 453-509 114-171 (208)
41 PF06785 UPF0242: Uncharacteri 67.1 14 0.00031 39.6 6.4 48 128-177 73-120 (401)
42 PF08317 Spc7: Spc7 kinetochor 65.8 66 0.0014 33.7 11.1 31 219-249 236-266 (325)
43 PRK14153 heat shock protein Gr 65.3 8.4 0.00018 38.1 4.2 56 453-509 131-187 (194)
44 PRK11637 AmiB activator; Provi 63.7 89 0.0019 33.7 11.9 48 204-251 189-236 (428)
45 PRK14157 heat shock protein Gr 63.4 7.5 0.00016 39.4 3.5 48 461-508 175-223 (227)
46 PRK14162 heat shock protein Gr 62.8 8 0.00017 38.2 3.5 47 461-507 144-192 (194)
47 smart00787 Spc7 Spc7 kinetocho 62.7 71 0.0015 33.7 10.7 115 125-258 108-242 (312)
48 PRK14139 heat shock protein Gr 61.2 9.4 0.0002 37.5 3.7 53 454-508 129-182 (185)
49 KOG4603 TBP-1 interacting prot 59.7 53 0.0011 32.5 8.3 40 204-248 105-144 (201)
50 PF07106 TBPIP: Tat binding pr 57.9 30 0.00065 32.6 6.4 75 203-279 76-152 (169)
51 PRK14143 heat shock protein Gr 57.6 10 0.00022 38.6 3.3 55 454-509 167-222 (238)
52 COG2433 Uncharacterized conser 57.6 98 0.0021 35.8 11.2 85 125-248 424-509 (652)
53 TIGR00634 recN DNA repair prot 56.6 2E+02 0.0044 32.3 13.6 28 275-302 366-394 (563)
54 PF15290 Syntaphilin: Golgi-lo 56.4 48 0.001 34.9 7.9 44 205-248 88-138 (305)
55 KOG2264 Exostosin EXT1L [Signa 56.0 19 0.00042 41.1 5.4 52 203-254 97-148 (907)
56 PF08826 DMPK_coil: DMPK coile 54.9 53 0.0011 27.0 6.4 13 235-247 47-59 (61)
57 PRK11637 AmiB activator; Provi 54.6 99 0.0022 33.4 10.4 47 206-252 75-121 (428)
58 PRK14159 heat shock protein Gr 54.2 16 0.00035 35.6 4.0 45 462-507 129-174 (176)
59 PRK14146 heat shock protein Gr 53.8 13 0.00029 37.2 3.4 49 461-509 159-212 (215)
60 PF05984 Cytomega_UL20A: Cytom 53.0 4 8.7E-05 35.7 -0.3 16 436-451 1-16 (100)
61 PRK14163 heat shock protein Gr 52.3 14 0.0003 37.2 3.3 56 454-510 132-188 (214)
62 PF12718 Tropomyosin_1: Tropom 52.1 24 0.00051 33.1 4.6 55 204-258 5-59 (143)
63 PF14584 DUF4446: Protein of u 49.5 27 0.00059 33.2 4.6 20 168-187 18-37 (151)
64 PRK14149 heat shock protein Gr 49.3 25 0.00053 34.8 4.4 46 462-508 142-188 (191)
65 PRK10884 SH3 domain-containing 48.8 67 0.0014 32.0 7.4 38 218-255 130-167 (206)
66 PF07926 TPR_MLP1_2: TPR/MLP1/ 48.3 1.7E+02 0.0036 26.8 9.4 105 129-257 20-128 (132)
67 PHA02562 46 endonuclease subun 48.1 1.5E+02 0.0033 32.5 10.8 82 139-223 236-323 (562)
68 PF12325 TMF_TATA_bd: TATA ele 47.1 24 0.00051 32.5 3.7 35 221-255 17-51 (120)
69 COG5124 Protein predicted to b 46.3 1.4E+02 0.003 29.8 8.9 28 318-345 170-199 (209)
70 TIGR03185 DNA_S_dndD DNA sulfu 45.6 1.8E+02 0.004 33.2 11.2 81 207-295 422-502 (650)
71 PF11932 DUF3450: Protein of u 45.0 48 0.001 33.2 5.8 49 204-252 54-102 (251)
72 PF05529 Bap31: B-cell recepto 44.7 72 0.0016 30.6 6.8 31 218-248 159-189 (192)
73 COG4913 Uncharacterized protei 43.4 1.5E+02 0.0032 35.4 9.8 120 113-251 613-736 (1104)
74 COG2433 Uncharacterized conser 43.3 27 0.00059 40.0 4.1 30 121-151 337-366 (652)
75 PF10018 Med4: Vitamin-D-recep 42.3 93 0.002 30.1 7.2 31 223-253 32-62 (188)
76 COG1382 GimC Prefoldin, chaper 42.2 1.2E+02 0.0026 28.1 7.4 74 168-251 42-115 (119)
77 PF11559 ADIP: Afadin- and alp 42.1 2.8E+02 0.0061 25.5 12.0 92 130-244 59-150 (151)
78 PHA00727 hypothetical protein 41.8 98 0.0021 31.3 7.2 93 170-287 12-112 (278)
79 PF12777 MT: Microtubule-bindi 41.2 72 0.0016 33.6 6.7 53 204-256 219-271 (344)
80 PF10234 Cluap1: Clusterin-ass 40.8 90 0.0019 32.5 7.1 35 150-184 62-96 (267)
81 KOG0995 Centromere-associated 40.8 1.4E+02 0.0031 34.2 9.1 44 206-249 280-323 (581)
82 PF08614 ATG16: Autophagy prot 40.0 95 0.0021 30.1 6.8 45 212-256 136-180 (194)
83 KOG4552 Vitamin-D-receptor int 39.8 1.3E+02 0.0028 30.7 7.7 30 219-248 73-102 (272)
84 PRK14142 heat shock protein Gr 39.3 32 0.0007 34.8 3.6 49 461-509 132-182 (223)
85 PHA02562 46 endonuclease subun 38.6 3.1E+02 0.0066 30.2 11.3 102 123-255 299-400 (562)
86 PRK14164 heat shock protein Gr 38.6 28 0.00062 35.1 3.1 46 461-508 169-215 (218)
87 PRK09039 hypothetical protein; 38.1 1.8E+02 0.0038 31.0 9.0 16 282-297 189-204 (343)
88 PF03962 Mnd1: Mnd1 family; I 37.8 2E+02 0.0043 28.1 8.7 95 221-334 70-169 (188)
89 TIGR02338 gimC_beta prefoldin, 37.8 1.4E+02 0.0031 26.4 7.1 70 167-246 38-107 (110)
90 COG4942 Membrane-bound metallo 37.6 1.5E+02 0.0032 32.9 8.4 21 235-255 88-108 (420)
91 PF08657 DASH_Spc34: DASH comp 36.7 42 0.0009 34.6 4.0 35 172-218 179-213 (259)
92 cd00632 Prefoldin_beta Prefold 36.5 1.5E+02 0.0033 25.8 7.0 36 212-247 69-104 (105)
93 PRK11546 zraP zinc resistance 35.6 2.9E+02 0.0062 26.4 9.0 33 150-182 38-70 (143)
94 PF13815 Dzip-like_N: Iguana/D 35.0 85 0.0018 28.2 5.3 40 204-243 78-117 (118)
95 TIGR03185 DNA_S_dndD DNA sulfu 35.0 59 0.0013 37.1 5.3 43 204-246 207-249 (650)
96 PF15272 BBP1_C: Spindle pole 34.7 1.4E+02 0.0031 29.8 7.2 87 140-256 40-129 (196)
97 PF05983 Med7: MED7 protein; 34.2 94 0.002 29.8 5.7 42 204-249 119-160 (162)
98 PF09726 Macoilin: Transmembra 33.6 58 0.0012 38.1 4.9 22 274-295 620-641 (697)
99 KOG0993 Rab5 GTPase effector R 33.3 4.9E+02 0.011 29.2 11.4 118 123-258 338-465 (542)
100 KOG4673 Transcription factor T 32.9 2.8E+02 0.0061 32.9 9.9 121 126-258 544-668 (961)
101 PF05266 DUF724: Protein of un 31.8 85 0.0018 30.9 5.1 45 204-248 129-173 (190)
102 PRK03578 hscB co-chaperone Hsc 31.7 3.7E+02 0.0081 26.0 9.4 18 139-156 22-39 (176)
103 PF09738 DUF2051: Double stran 31.5 94 0.002 32.8 5.6 75 173-255 84-161 (302)
104 TIGR02231 conserved hypothetic 31.4 4E+02 0.0086 29.6 10.8 45 210-254 128-172 (525)
105 PF14257 DUF4349: Domain of un 31.3 3E+02 0.0066 27.6 9.1 56 204-259 130-194 (262)
106 KOG3433 Protein involved in me 30.9 2.5E+02 0.0054 28.2 8.0 18 320-337 168-185 (203)
107 KOG1962 B-cell receptor-associ 30.8 5.3E+02 0.011 26.3 10.5 45 204-248 163-207 (216)
108 PRK03598 putative efflux pump 30.6 5E+02 0.011 26.7 10.8 44 141-184 89-132 (331)
109 COG2900 SlyX Uncharacterized p 30.5 1.9E+02 0.004 24.8 6.1 53 203-255 5-57 (72)
110 PF10779 XhlA: Haemolysin XhlA 30.5 1.8E+02 0.0038 24.0 6.0 42 208-249 8-49 (71)
111 PF09726 Macoilin: Transmembra 30.3 2.8E+02 0.006 32.6 9.6 39 211-249 543-581 (697)
112 COG1579 Zn-ribbon protein, pos 30.0 6.3E+02 0.014 26.0 11.2 106 130-246 31-136 (239)
113 PF14555 UBA_4: UBA-like domai 29.4 41 0.0009 24.9 1.9 20 291-310 17-36 (43)
114 TIGR02169 SMC_prok_A chromosom 29.3 3.8E+02 0.0082 31.9 10.8 10 325-334 540-549 (1164)
115 KOG1899 LAR transmembrane tyro 29.2 4E+02 0.0087 31.4 10.2 114 126-253 170-293 (861)
116 COG4942 Membrane-bound metallo 28.6 96 0.0021 34.3 5.3 43 204-246 64-106 (420)
117 PRK13729 conjugal transfer pil 28.5 72 0.0016 35.8 4.4 22 223-244 100-121 (475)
118 PF10112 Halogen_Hydrol: 5-bro 28.3 2.8E+02 0.006 26.8 8.0 54 133-191 101-154 (199)
119 KOG0980 Actin-binding protein 28.3 4.6E+02 0.0099 32.0 10.8 75 222-296 528-645 (980)
120 KOG3647 Predicted coiled-coil 27.6 7.3E+02 0.016 26.5 11.0 132 149-306 2-138 (338)
121 KOG0977 Nuclear envelope prote 25.9 40 0.00088 38.3 1.9 68 227-297 296-366 (546)
122 COG5493 Uncharacterized conser 25.7 2.8E+02 0.0061 28.1 7.4 70 206-302 64-133 (231)
123 TIGR02680 conserved hypothetic 25.6 9E+02 0.019 30.7 13.4 30 139-168 820-853 (1353)
124 PF04156 IncA: IncA protein; 25.5 3.3E+02 0.0071 25.8 7.8 16 146-161 59-74 (191)
125 PF06818 Fez1: Fez1; InterPro 25.4 2.1E+02 0.0045 28.8 6.6 53 205-257 51-103 (202)
126 PF08172 CASP_C: CASP C termin 24.9 1E+02 0.0022 31.5 4.5 54 202-258 78-131 (248)
127 KOG3003 Molecular chaperone of 24.6 1.5E+02 0.0033 30.4 5.5 41 462-502 183-223 (236)
128 PF15619 Lebercilin: Ciliary p 24.6 2E+02 0.0043 28.5 6.2 46 203-248 65-110 (194)
129 PF03087 DUF241: Arabidopsis p 24.5 7.3E+02 0.016 24.9 13.1 28 270-297 118-145 (231)
130 PF06476 DUF1090: Protein of u 24.5 3E+02 0.0065 25.1 6.9 43 204-249 68-111 (115)
131 PF05529 Bap31: B-cell recepto 24.4 1.5E+02 0.0033 28.4 5.4 32 226-257 153-184 (192)
132 PF12808 Mto2_bdg: Micro-tubul 24.4 50 0.0011 26.4 1.6 38 221-258 9-46 (52)
133 KOG2391 Vacuolar sorting prote 24.1 3.9E+02 0.0084 29.1 8.6 32 219-250 252-283 (365)
134 KOG4797 Transcriptional regula 24.1 72 0.0016 29.3 2.8 22 234-255 67-88 (123)
135 PF09849 DUF2076: Uncharacteri 23.8 1.9E+02 0.004 29.8 6.1 31 129-172 6-36 (247)
136 COG4026 Uncharacterized protei 23.8 1.5E+02 0.0033 30.6 5.3 48 203-250 160-207 (290)
137 PRK09343 prefoldin subunit bet 23.7 4.1E+02 0.009 24.1 7.7 73 167-249 42-114 (121)
138 PF10805 DUF2730: Protein of u 23.7 1.2E+02 0.0027 26.9 4.2 26 223-248 52-79 (106)
139 PRK14156 heat shock protein Gr 23.5 86 0.0019 30.7 3.4 44 464-507 130-175 (177)
140 PF10186 Atg14: UV radiation r 23.4 7.3E+02 0.016 24.6 11.8 45 204-248 61-105 (302)
141 PF00170 bZIP_1: bZIP transcri 23.1 2.7E+02 0.0059 22.1 5.8 27 221-247 34-60 (64)
142 PF11559 ADIP: Afadin- and alp 23.1 1.6E+02 0.0034 27.2 5.0 47 209-255 48-94 (151)
143 PF07200 Mod_r: Modifier of ru 23.1 2.1E+02 0.0046 26.2 5.8 19 268-286 123-141 (150)
144 PF02050 FliJ: Flagellar FliJ 22.9 4.4E+02 0.0096 21.9 8.9 77 168-254 17-93 (123)
145 KOG4657 Uncharacterized conser 22.9 8.5E+02 0.018 25.3 10.3 26 127-153 30-55 (246)
146 PF12018 DUF3508: Domain of un 22.7 5.3E+02 0.011 26.6 9.2 85 158-248 4-90 (281)
147 COG3883 Uncharacterized protei 22.6 1.1E+02 0.0024 31.9 4.2 100 204-306 57-163 (265)
148 COG1579 Zn-ribbon protein, pos 22.6 4.5E+02 0.0098 27.1 8.5 52 204-255 64-124 (239)
149 PF09755 DUF2046: Uncharacteri 22.5 5.6E+02 0.012 27.5 9.3 89 210-302 132-251 (310)
150 KOG0996 Structural maintenance 21.8 9.3E+02 0.02 30.4 11.9 115 128-252 463-581 (1293)
151 PRK10884 SH3 domain-containing 21.7 1.5E+02 0.0032 29.7 4.7 11 174-184 101-111 (206)
152 PF04156 IncA: IncA protein; 21.4 7E+02 0.015 23.5 12.6 23 128-150 100-122 (191)
153 PHA03155 hypothetical protein; 21.3 2.6E+02 0.0056 25.9 5.8 48 234-282 8-55 (115)
154 PRK13182 racA polar chromosome 21.3 1.2E+02 0.0027 29.4 4.0 42 217-258 96-142 (175)
155 TIGR02473 flagell_FliJ flagell 21.2 4.5E+02 0.0097 23.3 7.4 18 167-184 31-48 (141)
156 KOG1899 LAR transmembrane tyro 21.2 1.9E+02 0.0041 33.9 5.9 60 199-258 125-205 (861)
157 TIGR02169 SMC_prok_A chromosom 21.0 5.9E+02 0.013 30.3 10.3 27 125-151 760-786 (1164)
158 PF06818 Fez1: Fez1; InterPro 20.9 1.2E+02 0.0027 30.4 4.0 35 223-257 20-54 (202)
159 PF13863 DUF4200: Domain of un 20.8 1.6E+02 0.0035 26.0 4.4 34 226-259 73-106 (126)
160 PF10481 CENP-F_N: Cenp-F N-te 20.8 91 0.002 32.9 3.1 55 204-258 86-140 (307)
161 PF06785 UPF0242: Uncharacteri 20.5 1.1E+03 0.024 25.9 11.0 59 284-345 238-299 (401)
162 cd07705 Ig2_Necl-1 Second immu 20.2 1.1E+02 0.0023 25.5 2.9 66 443-509 4-69 (83)
163 PF09744 Jnk-SapK_ap_N: JNK_SA 20.2 7.8E+02 0.017 23.7 9.5 23 235-257 90-112 (158)
164 PF05812 Herpes_BLRF2: Herpesv 20.2 2.4E+02 0.0053 26.1 5.4 63 232-297 1-66 (118)
No 1
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=100.00 E-value=1.1e-44 Score=327.82 Aligned_cols=129 Identities=40% Similarity=0.597 Sum_probs=123.4
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCccccccccc
Q 040591 121 RLVNTQLANTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAI 200 (514)
Q Consensus 121 ~~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~ 200 (514)
..++..++|++|++|||+||+||+||+|||+||+|||||+|++||++||+||++||+||++|++ +++++ +|+
T Consensus 3 ~~~~~~~~eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~--~~~~~------~~~ 74 (131)
T PF04859_consen 3 EAQRAAAMEALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRK--KQSDP------SPQ 74 (131)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCC------Ccc
Confidence 5678899999999999999999999999999999999999999999999999999999999999 55555 488
Q ss_pred chhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccccc
Q 040591 201 GSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 201 ~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl 257 (514)
.+++.++++|||++|+|||+++++||+|+++||+||.+||++|+++.+.|++||+||
T Consensus 75 ~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 75 VARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 889999999999999999999999999999999999999999999999999999986
No 2
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=90.19 E-value=0.33 Score=45.12 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=35.5
Q ss_pred CcceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEE
Q 040591 453 QVDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVY 506 (514)
Q Consensus 453 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVY 506 (514)
.+..+.+. |..|||.+||-|..-..++...-.|.=.+.|||++|++||+ ++|-
T Consensus 109 Gv~~i~~~-G~~FDp~~heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~ 162 (165)
T PF01025_consen 109 GVEEIEPV-GEPFDPNLHEAVETVPDPDKEPGTIVEVVRPGYRLGGRVLRPAEVV 162 (165)
T ss_dssp TEEEE--T-SSB--TTTEEEEEEECSSSS-CTBEEEECC-EEEETTEEEE-EEEE
T ss_pred CCEecCCC-CCCCCHHHheeheecCcCCCCcCeEEEEEecCEEECCEEeeeeEEE
Confidence 45666666 99999999999875433334456788899999999999986 4443
No 3
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=84.72 E-value=3.6 Score=33.90 Aligned_cols=52 Identities=25% Similarity=0.332 Sum_probs=43.1
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~ 255 (514)
+...|.+++.+++..|-++..|...+-.-..+|..|+++|..+..+...++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678999999999999999999999999999999999999999887777653
No 4
>PRK09039 hypothetical protein; Validated
Probab=84.26 E-value=11 Score=40.08 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=51.4
Q ss_pred HhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 173 QRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 173 ~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
+.|+++|..|.+ . .|+...|.++|..++..+...+..+..+|++.+..+.+|..|+.+|..+..
T Consensus 123 ~~L~~~k~~~se--~----------~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 123 QELDSEKQVSAR--A----------LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALA 186 (343)
T ss_pred HHHHHHHHHHHH--h----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888876 2 477778999999999888888888888888888888888888877776653
No 5
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=82.31 E-value=1.3 Score=43.27 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=38.8
Q ss_pred CcceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE
Q 040591 453 QVDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ 502 (514)
Q Consensus 453 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik 502 (514)
.+.-+.+ .|..|||.++|-|..-..++...-.|.-.+-.||++|++||+
T Consensus 135 Gv~~i~~-~Ge~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRVLR 183 (193)
T COG0576 135 GVEEIGP-EGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKLNDRVLR 183 (193)
T ss_pred CCEEeCC-CCCCCCHHHhhheeeecCCCCCCCeEEEEeecCeeeCCEecc
Confidence 4566666 799999999999875433344456788889999999999997
No 6
>PRK10869 recombination and repair protein; Provisional
Probab=80.57 E-value=20 Score=40.37 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=19.6
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhcCC
Q 040591 276 SLLHDVCR-AAHKFTKILIDLMKKAGW 301 (514)
Q Consensus 276 ~~l~~A~~-Svr~FaK~Li~~Mr~agw 301 (514)
..++.+|+ +...|.+.+..+|+.-|-
T Consensus 362 ~~LS~~R~~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 362 QKLHQSRQRYAKELAQLITESMHELSM 388 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34555555 789999999999986665
No 7
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=80.48 E-value=3.1 Score=37.32 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=46.0
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
|.|....+++.+-.+..-..+|+.+++.||..+..+..+++.+.-+|..|++|+.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~ 64 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVE 64 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666677899999999999999999999999999999998754
No 8
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=79.09 E-value=2.1 Score=39.13 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=36.5
Q ss_pred CcceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE
Q 040591 453 QVDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ 502 (514)
Q Consensus 453 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik 502 (514)
.+..+.+ .|..|||.++|-|.....++...-.|.=.+.|||++++.||+
T Consensus 83 Gv~~i~~-~g~~FDp~~Heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlR 131 (137)
T cd00446 83 GVEKIEP-EGEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYKLGDRVLR 131 (137)
T ss_pred CCEEECC-CCCCCCHHHheeeeeecCCCCCcCEEEEEeecCeEECCEEec
Confidence 3445555 377999999999865333333455788899999999999987
No 9
>PRK14150 heat shock protein GrpE; Provisional
Probab=79.00 E-value=2.1 Score=42.00 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=38.8
Q ss_pred cceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEec
Q 040591 454 VDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLC 508 (514)
Q Consensus 454 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs 508 (514)
+..+.+ .|..|||.++|-|..-..++...-.|--.+-+|++++++||+ ++|.++
T Consensus 138 v~~i~~-~G~~FDP~~HeAv~~~~~~~~~~gtI~~v~q~GY~l~drvLRpA~V~Vs 192 (193)
T PRK14150 138 VEVVGP-VGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYTLNGRLLRPAMVMVS 192 (193)
T ss_pred CeeeCC-CCCCCCHhHcceeeeeCCCCCCcCEEEEEeeCCeEeCCEEecceEEEeC
Confidence 444543 599999999999964333333345677889999999999987 456543
No 10
>PRK14151 heat shock protein GrpE; Provisional
Probab=77.44 E-value=2.8 Score=40.62 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=39.8
Q ss_pred CcceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEec
Q 040591 453 QVDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLC 508 (514)
Q Consensus 453 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs 508 (514)
.+..+.. .|..|||.++|-|.....++...-.|.=.+-+|+++|++||+ ++|-++
T Consensus 119 Gv~~i~~-~G~~FDP~~HEAv~~~~~~~~~~gtI~~v~qkGY~l~dRvLRpA~V~Va 174 (176)
T PRK14151 119 QLEAVDP-HGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLLNGRLLRPAMVVVS 174 (176)
T ss_pred CCEEeCC-CCCCCCHHHhhcceeeCCCCCCcCeEEEEeeCCcEECCEEecCcEEEec
Confidence 3455554 699999999999875433333345677888999999999987 455543
No 11
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=76.98 E-value=18 Score=40.43 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=35.4
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Q 040591 208 VQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNS 251 (514)
Q Consensus 208 iqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~ 251 (514)
..-..++.+.|=..+++|+.++..|++||..|+.+.++|.....
T Consensus 318 ~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 318 VNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34445566667778899999999999999999999999976443
No 12
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=76.62 E-value=21 Score=43.70 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHHhhhhhHHHHHH-HhhcCCCCChhhHHHH-HHHHHHHHHhhHHhHHHHHhhcCCCCCcccccccccc
Q 040591 124 NTQLANTLISSIFATFSSFEASYLQ-LQTAHVPFVEENIKAA-DRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIG 201 (514)
Q Consensus 124 ~~~~~eali~~lFa~VSslKaAY~q-LQ~Ah~PyDpekI~aA-D~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~ 201 (514)
+...+...+..+|.-..=+-..|.. -.-.--||||..+..+ ..+...||. .|++..... ....
T Consensus 101 ~~~~Al~~Lk~lf~l~~Wf~~~Y~~~~~~~~~~F~~p~~p~~~~~~~~~~~~---~l~~~~~~~------------~~~~ 165 (1123)
T PRK11448 101 DHREALMGLKLAFRLAVWFHRTYGKDWDFKPGPFVPPEDPENLLHALQQEVL---TLKQQLELQ------------AREK 165 (1123)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCcchhhhhHHHHH---HHHHHHHHh------------hhhh
Confidence 3444556677777766666666655 2233457998877433 333555555 334443210 0011
Q ss_pred hhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040591 202 SCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEI 246 (514)
Q Consensus 202 s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el 246 (514)
....+.++.+...++..|.+.++++++..+-+.++..|+.+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (1123)
T PRK11448 166 AQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210 (1123)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 113444555555666666667777777777777777666655543
No 13
>PRK14140 heat shock protein GrpE; Provisional
Probab=76.13 E-value=2.8 Score=41.26 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=35.8
Q ss_pred cCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEe
Q 040591 460 ERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYL 507 (514)
Q Consensus 460 ~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYL 507 (514)
..|..|||.++|-|..-..++...-.|.-.+-+|+++|++||+ ++|-+
T Consensus 141 ~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~V 189 (191)
T PRK14140 141 AVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKLKDRVIRPSMVKV 189 (191)
T ss_pred CCCCCCChHHhccceeeCCCCCCcCeEEEEeeCCeEeCCEEecCcEEEe
Confidence 4699999999998864322333345677889999999999987 45544
No 14
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=74.81 E-value=39 Score=32.96 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHH-hhHHhHHHH
Q 040591 128 ANTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQ-RLSDFKQFY 182 (514)
Q Consensus 128 ~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~-~Ls~LK~~y 182 (514)
-.-|+.+|.+....+=+||..|....+-|.-.+.-.+-.. ..+|+ .+++|+.-.
T Consensus 82 RGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~-~~~l~~~i~~L~~e~ 136 (189)
T PF10211_consen 82 RGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQG-KQELEEEIEELEEEK 136 (189)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4679999999999999999999887776655554444332 23333 444444433
No 15
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=74.77 E-value=6.2 Score=33.10 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=40.9
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
|..|++.+...--.+..++++|.+.+..-+.++..|+.+++++......|+.++.
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555566788888888888888888888888888887777777664
No 16
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.18 E-value=11 Score=35.49 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=23.0
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHHHHH-hhHHhHHHHHh
Q 040591 146 YLQLQTAHVPFVEENIKAADRALVSHLQ-RLSDFKQFYKD 184 (514)
Q Consensus 146 Y~qLQ~Ah~PyDpekI~aAD~avVsEL~-~Ls~LK~~y~~ 184 (514)
|.-.|..=---++|.+.+-|.- +.+|+ .|.+|+..+..
T Consensus 59 Y~~~Q~~~~~~s~eel~~ld~e-i~~L~~el~~l~~~~k~ 97 (169)
T PF07106_consen 59 YFANQDELEVPSPEELAELDAE-IKELREELAELKKEVKS 97 (169)
T ss_pred EeeCccccCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 6666664333467777777766 55665 56666666544
No 17
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.16 E-value=31 Score=36.12 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhH
Q 040591 128 ANTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHR 207 (514)
Q Consensus 128 ~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~ae 207 (514)
.+.+...|-..+..|+.-|..|.. .++..|.++-.=..+.+.|+........-+.-.... +.-.-..+..+
T Consensus 147 l~gl~~~L~~~~~~L~~D~~~L~~--------~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~-D~~eL~~lr~e 217 (325)
T PF08317_consen 147 LEGLKEGLEENLELLQEDYAKLDK--------QLEQLDELLPKLRERKAELEEELENLKQLVEEIESC-DQEELEALRQE 217 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-CHHHHHHHHHH
Confidence 466777777777888877777753 344444433322223344444333321111100000 00001114445
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccccc
Q 040591 208 VQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 208 iqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl 257 (514)
+.++...++.-...+..|+.++...+.+|..+..++.++......+++.+
T Consensus 218 L~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 218 LAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544445556677777777777777776666666666655443
No 18
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=73.95 E-value=15 Score=41.67 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHhhc---------CCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHH
Q 040591 139 FSSFEASYLQLQTA---------HVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQ 209 (514)
Q Consensus 139 VSslKaAY~qLQ~A---------h~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiq 209 (514)
+..+-.||.+|+.| .++|||+.+..- -+=|..|..|+|.|.. .++-+ + ....+++
T Consensus 268 ~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~v----e~Rl~~L~~l~RKY~~---~~~~l------~---~~~~~~~ 331 (557)
T COG0497 268 AELLEEALYELEEASEELRAYLDELEFDPNRLEEV----EERLFALKSLARKYGV---TIEDL------L---EYLDKIK 331 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH----HHHHHHHHHHHHHhCC---CHHHH------H---HHHHHHH
Confidence 34455688888876 468999887653 2233444445555532 22221 1 1345555
Q ss_pred HhhhhhhhHHHHHHHHHHHH
Q 040591 210 ENQSKLRTLEIVSNRLQEEI 229 (514)
Q Consensus 210 Eqq~~l~tyE~~~~kLe~e~ 229 (514)
++-..|...+.-++.|++++
T Consensus 332 ~el~~L~~~~~~~~~Le~~~ 351 (557)
T COG0497 332 EELAQLDNSEESLEALEKEV 351 (557)
T ss_pred HHHHHhhhhhhHHHHHHHHH
Confidence 55444544444444444443
No 19
>PRK14158 heat shock protein GrpE; Provisional
Probab=73.60 E-value=4 Score=40.26 Aligned_cols=53 Identities=13% Similarity=0.267 Sum_probs=37.7
Q ss_pred ceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEe
Q 040591 455 DIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYL 507 (514)
Q Consensus 455 ~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYL 507 (514)
..+....|..|||.+.|-|.....++...-.|.=.+-+|++++++||+ ++|-+
T Consensus 139 ~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 192 (194)
T PRK14158 139 TPVEAEKGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLLNERLLRPAMVSV 192 (194)
T ss_pred EEecCCCCCCCChHHhhhheeecCCCCCcCEEEEEeeCCcEeCCEEeecceeEe
Confidence 333334599999999998764333333345788889999999999997 45544
No 20
>PRK00295 hypothetical protein; Provisional
Probab=73.58 E-value=11 Score=31.22 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=45.4
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le 254 (514)
+.++|.+++.+++--|-++..|...+-.-+.+|..|+.+|..+..+.+.++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667899999999999999999999999999999999999999877666654
No 21
>PRK14145 heat shock protein GrpE; Provisional
Probab=73.46 E-value=3.8 Score=40.55 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=35.4
Q ss_pred CCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEe
Q 040591 461 RGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYL 507 (514)
Q Consensus 461 rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYL 507 (514)
.|..|||.+.|-|.....++...-.|.=.+-+|++++++||+ ++|-+
T Consensus 147 ~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRPA~V~V 194 (196)
T PRK14145 147 EGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYLKDKVIRPSLVKV 194 (196)
T ss_pred CCCCCCchhhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeeccceEEe
Confidence 599999999999874333333345677889999999999997 34443
No 22
>PRK14144 heat shock protein GrpE; Provisional
Probab=73.45 E-value=3.7 Score=40.72 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=39.1
Q ss_pred cceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEec
Q 040591 454 VDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLC 508 (514)
Q Consensus 454 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs 508 (514)
+..+.. .|..|||.++|-|.....++...-.|.=.+-+|++++++||+ ++|-++
T Consensus 143 V~~I~~-~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vs 197 (199)
T PRK14144 143 VEQIDP-LGQTFDPQQHEAMSMQPAPGAPPNSVITVFQKGYKLSDRVIRPARVIVS 197 (199)
T ss_pred CEEeCC-CCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEECCEEecccEEEec
Confidence 344443 599999999999864333333456788899999999999997 456554
No 23
>PRK04325 hypothetical protein; Provisional
Probab=73.05 E-value=12 Score=31.51 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=46.0
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le 254 (514)
+..+|.+++.+++--|-++..|...+-.-.-+|.+|+.+|.-+..+.+.++
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778899999999999999999999999999999999999998877666654
No 24
>PRK02793 phi X174 lysis protein; Provisional
Probab=72.67 E-value=12 Score=31.22 Aligned_cols=51 Identities=27% Similarity=0.320 Sum_probs=46.0
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le 254 (514)
+.++|.+++.+++--|-++..|...+-.-..+|.+|+.+|..+..+...++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 788999999999999999999999999999999999999999877666654
No 25
>PRK14148 heat shock protein GrpE; Provisional
Probab=72.58 E-value=4.1 Score=40.25 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=38.3
Q ss_pred cceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEe
Q 040591 454 VDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYL 507 (514)
Q Consensus 454 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYL 507 (514)
+..+.. .|..|||.+.|-|..-..++...-.|.=.+-+|+++|++||+ ++|.+
T Consensus 139 v~~I~~-~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~V 192 (195)
T PRK14148 139 VEELDP-KGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRIVRAAKVVI 192 (195)
T ss_pred CEEeCC-CCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeeeccEEEe
Confidence 344444 499999999999875433333345677888999999999987 45544
No 26
>PRK04406 hypothetical protein; Provisional
Probab=72.45 E-value=12 Score=31.53 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=45.5
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le 254 (514)
+..+|.+++.+++--|-++..|...+-.-..+|..|+.+|..+..+...++
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 788999999999999999999999999999999999999998877665543
No 27
>PRK14161 heat shock protein GrpE; Provisional
Probab=72.03 E-value=4.8 Score=39.15 Aligned_cols=55 Identities=11% Similarity=0.225 Sum_probs=39.1
Q ss_pred cceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEec
Q 040591 454 VDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLC 508 (514)
Q Consensus 454 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs 508 (514)
+..+....|..|||.+.|-|.....++...-.|.=.+-+|++++++||+ ++|-++
T Consensus 120 v~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~v~q~GY~l~dRVLRpA~V~Va 175 (178)
T PRK14161 120 IEEIKPEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKIRDRLLRPATVQVV 175 (178)
T ss_pred CEEecCCCCCCCChHHhhhheeeCCCCCCcCEEEEEeeCCcEeCCEeecCceEEeC
Confidence 3333334599999999998875433333345788889999999999997 455444
No 28
>PRK14154 heat shock protein GrpE; Provisional
Probab=71.85 E-value=5 Score=40.04 Aligned_cols=54 Identities=13% Similarity=0.260 Sum_probs=38.8
Q ss_pred cceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEe
Q 040591 454 VDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYL 507 (514)
Q Consensus 454 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYL 507 (514)
+..+....|..|||.+.|-|.....++...-.|.=.+-+|++++++||+ ++|-+
T Consensus 152 Ve~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVveV~qkGY~l~dRVLRPA~V~V 206 (208)
T PRK14154 152 VQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAARVIV 206 (208)
T ss_pred CEEecCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEEecceEEEe
Confidence 4444445699999999999864332232344788899999999999997 45544
No 29
>PRK14147 heat shock protein GrpE; Provisional
Probab=71.70 E-value=4 Score=39.46 Aligned_cols=53 Identities=11% Similarity=0.231 Sum_probs=38.1
Q ss_pred cceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEEE-EEEe
Q 040591 454 VDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQS-QVYL 507 (514)
Q Consensus 454 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVikc-rVYL 507 (514)
+..+.. .|..|||.+.|-|.....++...-.|.=.+-+|+++|+.||+- +|-+
T Consensus 115 v~~i~~-~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~RvLRpA~V~V 168 (172)
T PRK14147 115 LTLLDP-VGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLLNERLLRPALVVV 168 (172)
T ss_pred CEEeCC-CCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeccCceEEe
Confidence 444443 5999999999998653333333456778999999999999984 4443
No 30
>PRK00736 hypothetical protein; Provisional
Probab=71.51 E-value=14 Score=30.65 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=45.0
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le 254 (514)
+.+.|.+++.+++--|-++..|...+-.-..+|..|+++|..+..+.+.++
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567799999999999999999999999999999999999999877666654
No 31
>PRK14141 heat shock protein GrpE; Provisional
Probab=70.78 E-value=4.4 Score=40.44 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=39.8
Q ss_pred cceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEecc
Q 040591 454 VDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLCG 509 (514)
Q Consensus 454 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs~ 509 (514)
+..+.. .|..|||.+.|-|.....++...-.|.=.+-+|++++++||+ ++|-++.
T Consensus 136 V~~I~~-~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vsk 191 (209)
T PRK14141 136 VKKLDP-EGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGERVLRPAMVGVAK 191 (209)
T ss_pred CEEECC-CCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeecccEEEECC
Confidence 334443 599999999998864323233345677889999999999997 5776664
No 32
>PRK14160 heat shock protein GrpE; Provisional
Probab=70.30 E-value=4.8 Score=40.27 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=33.3
Q ss_pred CCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEe
Q 040591 462 GVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYL 507 (514)
Q Consensus 462 G~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYL 507 (514)
| .|||.+.|-|.....++...-.|.-.+-||+++|++||+ ++|-+
T Consensus 164 G-~FDP~~HEAv~~~~~~e~~~gtVveV~qkGY~l~dRVLRpA~V~V 209 (211)
T PRK14160 164 G-EFDPNLHNAVMHVEDENYGENEIVEVFQKGYKRGDKVIRYSMVKV 209 (211)
T ss_pred C-CCChHHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeeecceEEe
Confidence 6 899999998875333333345677889999999999998 34543
No 33
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.36 E-value=6.4 Score=38.11 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=24.0
Q ss_pred HHHHHhhhhhHHHHHHHhhc-------C-------CCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCccccccc
Q 040591 133 SSIFATFSSFEASYLQLQTA-------H-------VPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDL 198 (514)
Q Consensus 133 ~~lFa~VSslKaAY~qLQ~A-------h-------~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~ 198 (514)
.+|++.++.++..=..||.. | .|-.+..|+.-+..++.--..|+++.+.--....+... ..
T Consensus 27 ~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~-----~~ 101 (194)
T PF08614_consen 27 NRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVE-----LN 101 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cc
Confidence 67888999999888888862 1 12233334444444443333444444333221111111 01
Q ss_pred ccchhhhhHHHHhhhhhhhHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHhhcccccccc
Q 040591 199 AIGSCLEHRVQENQSKLRTLEIVSNRL-------QEEIDAKDSQVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 199 ~~~s~l~aeiqEqq~~l~tyE~~~~kL-------e~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl 257 (514)
-....+.+++++.+..|+.++.....| +.+++.|+.-+..|+.++..++-.++.+|+|+
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111124455555555555555544444 44444444444455555555555555555544
No 34
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.35 E-value=45 Score=35.19 Aligned_cols=123 Identities=11% Similarity=0.128 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCc--ccccccccchh
Q 040591 126 QLANTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFI--GAEEDLAIGSC 203 (514)
Q Consensus 126 ~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~--~~~~~~~~~s~ 203 (514)
...+.|...|-..+..|++.|..|= ..++.+|.++-.=.++...|+.-.....+.++.+ |. .-.-..
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L~--------~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d---~~eL~~ 208 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLLM--------KELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD---PTELDR 208 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC---HHHHHH
Confidence 3468899999999999999998873 4566666544322224444444333322211110 10 001112
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLSN 259 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~~ 259 (514)
+..++.++...+...-.-...++.++......|.....+..++....+.+++.+..
T Consensus 209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444456667777777777777777777777777776665443
No 35
>PRK10325 heat shock protein GrpE; Provisional
Probab=69.32 E-value=4.9 Score=39.63 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=38.8
Q ss_pred cceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEecc
Q 040591 454 VDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLCG 509 (514)
Q Consensus 454 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs~ 509 (514)
+..+. ..|..|||.+.|-|.....++...-.|.=.+-+|+++|++||+ ++|-++.
T Consensus 139 v~~i~-~~G~~FDP~~HEAv~~~~~~~~~~~~Vv~v~qkGY~l~drvlRpA~V~Vsk 194 (197)
T PRK10325 139 VEVIA-ETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAK 194 (197)
T ss_pred CeeeC-CCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeccCceEEeCC
Confidence 44444 3599999999999875333332334566788999999999997 5666653
No 36
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=69.09 E-value=13 Score=37.95 Aligned_cols=101 Identities=19% Similarity=0.375 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhcCCCC-------ChhhHHH--HHHHHHHHHHhhH------HhHHHHHhhcCCCCCcc
Q 040591 129 NTLISSIFATFSSFEASYLQLQTAHVPF-------VEENIKA--ADRALVSHLQRLS------DFKQFYKDVCKNPDFIG 193 (514)
Q Consensus 129 eali~~lFa~VSslKaAY~qLQ~Ah~Py-------DpekI~a--AD~avVsEL~~Ls------~LK~~y~~~~k~~~~~~ 193 (514)
..|-.++|...+++-- ..-.-..|| |+|-|+. -.++|-+=|+.|- +||+.|.+
T Consensus 72 ReLA~kf~eeLrg~VG---hiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee--------- 139 (290)
T COG4026 72 RELAEKFFEELRGMVG---HIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEE--------- 139 (290)
T ss_pred HHHHHHHHHHHHHhhh---hhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH---------
Confidence 4455666666665532 233344676 4554432 2334446666555 88888866
Q ss_pred cccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccc
Q 040591 194 AEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 194 ~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
+....+|.|.-- ..|-.++..+.++..++++.|.++...|+.||..++
T Consensus 140 ----------~kekl~E~~~Ek-------eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 140 ----------LKEKLEELQKEK-------EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred ----------HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233322211 233444445555555556666666666655555433
No 37
>PRK00846 hypothetical protein; Provisional
Probab=68.78 E-value=16 Score=31.29 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=47.2
Q ss_pred hhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Q 040591 203 CLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 203 ~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le 254 (514)
.+.++|.+++.+++--|.++..|...+-.-..+|..|+.+|.-+..+.+.++
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999998888777765
No 38
>PRK02119 hypothetical protein; Provisional
Probab=67.83 E-value=18 Score=30.33 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=45.1
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le 254 (514)
+.++|.+++.+++--|-++..|...+-.-..+|.+|+.+|..+..+.+.++
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 778899999999999999999999999999999999999998877665543
No 39
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=67.64 E-value=21 Score=37.41 Aligned_cols=81 Identities=12% Similarity=0.240 Sum_probs=50.9
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc-cccccCCCCCCCcccCHHHHHHHHHHHHHH
Q 040591 206 HRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLS-GKLSNNLSSSFDVLLTVRVFDSLLHDVCRA 284 (514)
Q Consensus 206 aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le-~rl~~~~ls~~~~~lsp~~F~~~l~~A~~S 284 (514)
-.+|...=-+|-+.+-+++-+..+..||+||.+||.+|...+..=-.=| +|+. =.-+|.+||+-
T Consensus 61 TPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVE---------------AQLALKEARkE 125 (305)
T PF15290_consen 61 TPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVE---------------AQLALKEARKE 125 (305)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence 3344333334444445566677888899999999999987654322211 1322 12478899999
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 040591 285 AHKFTKILIDLMKKAGWD 302 (514)
Q Consensus 285 vr~FaK~Li~~Mr~agwd 302 (514)
|+++ |-.|.-||++=-|
T Consensus 126 IkQL-kQvieTmrssL~e 142 (305)
T PF15290_consen 126 IKQL-KQVIETMRSSLAE 142 (305)
T ss_pred HHHH-HHHHHHHHhhhch
Confidence 9886 6667777765333
No 40
>PRK14155 heat shock protein GrpE; Provisional
Probab=67.37 E-value=7.3 Score=38.84 Aligned_cols=57 Identities=9% Similarity=0.134 Sum_probs=41.5
Q ss_pred CcceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEecc
Q 040591 453 QVDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLCG 509 (514)
Q Consensus 453 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs~ 509 (514)
.+..+.+..|..|||.+.|-|.....++...-.|.=.+-+|++++++||+ ++|-++.
T Consensus 114 GV~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak 171 (208)
T PRK14155 114 GLKKIDPAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGRLVRPAMVAVAA 171 (208)
T ss_pred CCceecCCCCCCCChhHhceeeeecCCCCCcCeEEEEeeCCeEeCCEeeccceEEECC
Confidence 34555555799999999998865333333355677889999999999997 5666654
No 41
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=67.07 E-value=14 Score=39.57 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHH
Q 040591 128 ANTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSD 177 (514)
Q Consensus 128 ~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~ 177 (514)
.++-|.+|-..=-+++.--..++.-| ++.+.++.-.+-++.||-+..+
T Consensus 73 lq~kirk~~e~~eglr~i~es~~e~q--~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKIRESVEERQ--QESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHH
Confidence 45556666666666666666666544 5666777666667777666555
No 42
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=65.80 E-value=66 Score=33.69 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 040591 219 EIVSNRLQEEIDAKDSQVAALRKQLGEIHKC 249 (514)
Q Consensus 219 E~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~ 249 (514)
+.-.++|+.++.....++..|+.+|.++++.
T Consensus 236 ~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 236 QEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666666666666666666543
No 43
>PRK14153 heat shock protein GrpE; Provisional
Probab=65.32 E-value=8.4 Score=38.07 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=40.6
Q ss_pred CcceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEecc
Q 040591 453 QVDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLCG 509 (514)
Q Consensus 453 ~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs~ 509 (514)
.+..+.+. |..|||.+.|-|.....++...-.|.=.+-+|++++++||+ ++|-++.
T Consensus 131 Gv~~I~~~-G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak 187 (194)
T PRK14153 131 GLERIECE-GEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYALNSKVIRPAMVSVAR 187 (194)
T ss_pred CCeeeCCC-CCCCChhHhceeeeeCCCCCCcCEEEEEeeCCcEeCCEEeeCcEEEECC
Confidence 45555554 99999999998864332233345677888999999999987 5666654
No 44
>PRK11637 AmiB activator; Provisional
Probab=63.67 E-value=89 Score=33.75 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=24.3
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNS 251 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~ 251 (514)
+..+..+++.+++..+..-.+|+++...|+.++..|+.++.+......
T Consensus 189 le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~ 236 (428)
T PRK11637 189 LEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLS 236 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555566655655556555555444443333
No 45
>PRK14157 heat shock protein GrpE; Provisional
Probab=63.44 E-value=7.5 Score=39.38 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=37.1
Q ss_pred CCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEec
Q 040591 461 RGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLC 508 (514)
Q Consensus 461 rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs 508 (514)
.|..|||.+-|-|.....++...-.|.=.+-+|++++++||| ++|-++
T Consensus 175 ~Ge~FDP~~HEAV~~~~~~~~~~gtVi~V~QkGY~l~dRVLRPA~V~Va 223 (227)
T PRK14157 175 KGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYRIGDRVIRAARVVVA 223 (227)
T ss_pred CCCCCChhhhceeeeecCCCCCcCEEEEEeeCCceeCCEeccCceEEeC
Confidence 599999999998864333333456788899999999999998 466554
No 46
>PRK14162 heat shock protein GrpE; Provisional
Probab=62.82 E-value=8 Score=38.21 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=34.5
Q ss_pred CCCccccccceeccccccC-CCCCCeEEEEecCCceeCCeEEE-EEEEe
Q 040591 461 RGVDFSMVYMEDVTRSKLV-GKTRAKVGFTVVPGFKVGRTVIQ-SQVYL 507 (514)
Q Consensus 461 rG~~F~~~YMEsV~~~~~~-~~~~~~VgftV~PGF~vg~tVik-crVYL 507 (514)
.|..|||.+.|-|..-..+ +...-.|.=.+-+|+++|++||+ ++|-+
T Consensus 144 ~G~~FDP~~HEAv~~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 192 (194)
T PRK14162 144 DGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDRTLRPAMVVV 192 (194)
T ss_pred CCCCCChhHhhhheeecCCCCCCcCEEEEEeeCCcEeCCEeeecceEEe
Confidence 5999999999998643221 22345666788999999999998 45544
No 47
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=62.72 E-value=71 Score=33.70 Aligned_cols=115 Identities=18% Similarity=0.260 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCC----------------hhhHHHHHHHHHHHHHhhHHhHHHHHhhcCC
Q 040591 125 TQLANTLISSIFATFSSFEASYLQLQTAHVPFV----------------EENIKAADRALVSHLQRLSDFKQFYKDVCKN 188 (514)
Q Consensus 125 ~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyD----------------pekI~aAD~avVsEL~~Ls~LK~~y~~~~k~ 188 (514)
...+..+|..=|-.|- .|+.||.-..=|+ -+.++.-++.+..++..|.+++...++ +
T Consensus 108 ~~d~r~lm~~Qf~lvK----~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~--~- 180 (312)
T smart00787 108 SPDVKLLMDKQFQLVK----TFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRD--R- 180 (312)
T ss_pred CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-
Confidence 5556778888887764 4888888777775 245566666666666666666665554 1
Q ss_pred CCCcccccccccchhhhhHHHHhhhhhhhHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccc
Q 040591 189 PDFIGAEEDLAIGSCLEHRVQENQSKLRTLEI----VSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 189 ~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~----~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
...|..++..+|......+. ..++|+.++..-+.+|...+.+|.+++.....++.++.
T Consensus 181 ------------~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 181 ------------KDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred ------------HHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01255666665555433322 45788888888888888888888888887777776665
No 48
>PRK14139 heat shock protein GrpE; Provisional
Probab=61.16 E-value=9.4 Score=37.45 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=38.9
Q ss_pred cceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEec
Q 040591 454 VDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLC 508 (514)
Q Consensus 454 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs 508 (514)
+..+.. .|..|||.++|-|..... +...-.|.=.+-+|++++++||+ ++|-++
T Consensus 129 v~~I~~-~G~~FDP~~HEAv~~~~~-~~~~gtVi~V~qkGY~l~dRVLRPA~V~Va 182 (185)
T PRK14139 129 VVEINP-VGEKFDPHQHQAISMVPA-EQEPNTVVAVLQKGYTIADRVLRPALVTVA 182 (185)
T ss_pred CceeCC-CCCCCChHHhheeeeecC-CCCcCEEEEEeeCCcEeCCEeccCceEEeC
Confidence 444554 599999999999875333 22345788889999999999997 455554
No 49
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=59.73 E-value=53 Score=32.46 Aligned_cols=40 Identities=33% Similarity=0.488 Sum_probs=28.6
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
+.|||+++++.| +...+|.++..-+.|+...+++|..+..
T Consensus 105 veaEik~L~s~L-----t~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 105 VEAEIKELSSAL-----TTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHhc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999998888 5566677766666666666666665544
No 50
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.91 E-value=30 Score=32.60 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=51.6
Q ss_pred hhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHhhccccccccccCCCCCCCcccCHHHHHHHHH
Q 040591 203 CLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQV--AALRKQLGEIHKCNSKLSGKLSNNLSSSFDVLLTVRVFDSLLH 279 (514)
Q Consensus 203 ~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi--~~Lr~~L~el~~~n~~Le~rl~~~~ls~~~~~lsp~~F~~~l~ 279 (514)
.|..+|.+++..++..+.-++.|++++..-.++. .+|+.++.++...+..|+.||..-.. .....+|+....+..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~--~~~~vs~ee~~~~~~ 152 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS--GSKPVSPEEKEKLEK 152 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCHHHHHHHHH
Confidence 3677888888888888888888888888777643 56777777777777777777653211 112356666554443
No 51
>PRK14143 heat shock protein GrpE; Provisional
Probab=57.64 E-value=10 Score=38.61 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=39.3
Q ss_pred cceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEecc
Q 040591 454 VDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLCG 509 (514)
Q Consensus 454 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs~ 509 (514)
+.-+.+ .|..|||.+.|-|.....++...-.|.=.+-+|++++++||| ++|-++.
T Consensus 167 V~~i~~-~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRpA~V~Vsk 222 (238)
T PRK14143 167 VSPMRV-VGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRVLRHAMVKVSM 222 (238)
T ss_pred CeeeCC-CCCCCChHHhheeeeecCCCCCcCeEEEEeeCCceeCCEecccceEEECC
Confidence 444444 599999999998864332233345666789999999999997 5666654
No 52
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.63 E-value=98 Score=35.78 Aligned_cols=85 Identities=19% Similarity=0.336 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHH-hhHHhHHHHHhhcCCCCCcccccccccchh
Q 040591 125 TQLANTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQ-RLSDFKQFYKDVCKNPDFIGAEEDLAIGSC 203 (514)
Q Consensus 125 ~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~-~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~ 203 (514)
....+.-+.+|=.-++.||+---+|+ ..+.+|+ +|.++++..+. +- .
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k----------------~eie~L~~~l~~~~r~~~~--~~--------------~ 471 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELK----------------REIEKLESELERFRREVRD--KV--------------R 471 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH--HH--------------h
Confidence 44457788888888999988777776 4677777 78888887764 20 1
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
..-+++..++ .+.+|+.++..+..++++|+.+|.++.+
T Consensus 472 ~~rei~~~~~-------~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 472 KDREIRARDR-------RIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred hhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345555555 4488999999999999999999998864
No 53
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=56.62 E-value=2e+02 Score=32.33 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=20.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcCCC
Q 040591 275 DSLLHDVC-RAAHKFTKILIDLMKKAGWD 302 (514)
Q Consensus 275 ~~~l~~A~-~Svr~FaK~Li~~Mr~agwd 302 (514)
-..++..| ++...|++.+..+|+.-|+.
T Consensus 366 a~~Ls~~R~~~a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 366 AVALSLIRRKAAERLAKRVEQELKALAME 394 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455664 47889999999999876664
No 54
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=56.38 E-value=48 Score=34.90 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=31.0
Q ss_pred hhHHHHhhhhh---hhH--HHHHHHHHHHHhhhhH--HHHHHHHHHHHHHh
Q 040591 205 EHRVQENQSKL---RTL--EIVSNRLQEEIDAKDS--QVAALRKQLGEIHK 248 (514)
Q Consensus 205 ~aeiqEqq~~l---~ty--E~~~~kLe~e~~~KDs--Ei~~Lr~~L~el~~ 248 (514)
..||.|+++.| +.= |.-|++.|+|+..|.+ ||..||+-++-..+
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666554 222 4468999999999998 89888887775443
No 55
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=55.97 E-value=19 Score=41.05 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=44.2
Q ss_pred hhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Q 040591 203 CLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 203 ~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le 254 (514)
.+++.-||+++.+.-|....++|++.+-.+..|+.+||.++..+++..+.|-
T Consensus 97 ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 97 ELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3788889999999999999999999999999999999988877766555443
No 56
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=54.94 E-value=53 Score=27.00 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 040591 235 QVAALRKQLGEIH 247 (514)
Q Consensus 235 Ei~~Lr~~L~el~ 247 (514)
+|..|++++.++.
T Consensus 47 ei~~L~~e~ee~r 59 (61)
T PF08826_consen 47 EIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 5566666665544
No 57
>PRK11637 AmiB activator; Provisional
Probab=54.63 E-value=99 Score=33.37 Aligned_cols=47 Identities=6% Similarity=0.204 Sum_probs=20.1
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Q 040591 206 HRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSK 252 (514)
Q Consensus 206 aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~ 252 (514)
.++...+..|...+..+..+++++...+.+|..|..+|.+++.....
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444444444443333
No 58
>PRK14159 heat shock protein GrpE; Provisional
Probab=54.16 E-value=16 Score=35.56 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=33.3
Q ss_pred CCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEEE-EEEe
Q 040591 462 GVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQS-QVYL 507 (514)
Q Consensus 462 G~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVikc-rVYL 507 (514)
| .|||.+.|-|..-..++...-.|.-.+-+|+++|++||+. +|-+
T Consensus 129 G-~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~V 174 (176)
T PRK14159 129 K-EFDPNLHEAMFHVDSENHQSGEVVQVLQKGYKIADRVIRPTKVSV 174 (176)
T ss_pred C-CCChHHhhhhheeCCCCCCcCeEEEEeeCCcEeCCEeeecceeEe
Confidence 6 6999999998653333333456778899999999999973 4443
No 59
>PRK14146 heat shock protein GrpE; Provisional
Probab=53.80 E-value=13 Score=37.18 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=36.3
Q ss_pred CCCccccccceeccccccCCCCCCeEEEEecCCceeCC----eEEE-EEEEecc
Q 040591 461 RGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGR----TVIQ-SQVYLCG 509 (514)
Q Consensus 461 rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~----tVik-crVYLs~ 509 (514)
.|..|||.++|-|.....++-..-.|.-.+-+|+++++ +||+ ++|-++.
T Consensus 159 ~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~r~~~RvLRpA~V~Vak 212 (215)
T PRK14146 159 KGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGYYYKENEDKFTLRPARVRIGK 212 (215)
T ss_pred CCCCCChhHhceeeeecCCCCCcCEEEEEeeCCeEeCCccCCeeccCceEEeCC
Confidence 69999999999997543333334567788899999998 5876 5666654
No 60
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=53.02 E-value=4 Score=35.69 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=14.3
Q ss_pred HHHHHHHhhhheeeeC
Q 040591 436 MAGSIWMLHKLGFSFD 451 (514)
Q Consensus 436 mAksVWLLH~LAfSf~ 451 (514)
||+++|+|-+||.++-
T Consensus 1 MaRRlwiLslLAVtLt 16 (100)
T PF05984_consen 1 MARRLWILSLLAVTLT 16 (100)
T ss_pred CchhhHHHHHHHHHHH
Confidence 8999999999998764
No 61
>PRK14163 heat shock protein GrpE; Provisional
Probab=52.30 E-value=14 Score=37.17 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=40.3
Q ss_pred cceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEeccc
Q 040591 454 VDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLCGL 510 (514)
Q Consensus 454 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs~~ 510 (514)
+..+.. .|..|||.+-|-|..-..++...-.|.=.+-+|++++++||+ ++|-++..
T Consensus 132 v~~I~~-~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRPA~V~Vsk~ 188 (214)
T PRK14163 132 LQQFGK-EGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRIGERTIRPARVAVAEP 188 (214)
T ss_pred CEEeCC-CCCCCChhHhceeeeecCCCCCcCEEEEEeeCCcCcCCEeccCceEEECCC
Confidence 334443 699999999998864333333345677889999999999997 56766653
No 62
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=52.06 E-value=24 Score=33.08 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=44.3
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
|.++..+-+.+...++.-++.|+.+...++.+|..|..++..++...-.++.+|.
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777888888888999999999999999888888888777766666554
No 63
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=49.49 E-value=27 Score=33.16 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=15.7
Q ss_pred HHHHHHhhHHhHHHHHhhcC
Q 040591 168 LVSHLQRLSDFKQFYKDVCK 187 (514)
Q Consensus 168 vVsEL~~Ls~LK~~y~~~~k 187 (514)
++.-..+|+.|+++|...-+
T Consensus 18 ~~~~~~kl~kl~r~Y~~lm~ 37 (151)
T PF14584_consen 18 IIILNIKLRKLKRRYDALMR 37 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 44677899999999988544
No 64
>PRK14149 heat shock protein GrpE; Provisional
Probab=49.31 E-value=25 Score=34.83 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEec
Q 040591 462 GVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLC 508 (514)
Q Consensus 462 G~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs 508 (514)
| .|||.+.|-|.....++...-.|.=.+-+|++++++||+ ++|-++
T Consensus 142 G-~FDP~~HEAv~~v~~~~~~~gtVv~V~QkGY~l~dRVLRPA~V~Va 188 (191)
T PRK14149 142 E-EFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIA 188 (191)
T ss_pred C-CCChHHhheeeeecCCCCCcCEEEEEeeCCcEeCCEEeeccEEEeC
Confidence 6 599999998864333333345677888999999999997 455444
No 65
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.76 E-value=67 Score=32.01 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Q 040591 218 LEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 218 yE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~ 255 (514)
-+..+.+|+++.+.-..|+..++.+++.++..|..+.+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555443
No 66
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=48.29 E-value=1.7e+02 Score=26.76 Aligned_cols=105 Identities=13% Similarity=0.251 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHH
Q 040591 129 NTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRV 208 (514)
Q Consensus 129 eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aei 208 (514)
+....++-....-++.=-...+.||-=|.-|-+.-|+. ++.|+.||.-+-. +..+|
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-----~~~L~~lr~e~~~-------------------~~~~~ 75 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED-----IKELQQLREELQE-------------------LQQEI 75 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHH-------------------HHHHH
Confidence 34445555555556666666778888888888777765 3555666666644 22233
Q ss_pred HHhhhhhhhHHHHH----HHHHHHHhhhhHHHHHHHHHHHHHHhhcccccccc
Q 040591 209 QENQSKLRTLEIVS----NRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 209 qEqq~~l~tyE~~~----~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl 257 (514)
.+.+....+..... ...+.+-..-..+|..++.+++++...|+-|-.+|
T Consensus 76 ~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 76 NELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332222222 23334444445578888899999999888776554
No 67
>PHA02562 46 endonuclease subunit; Provisional
Probab=48.12 E-value=1.5e+02 Score=32.51 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=34.8
Q ss_pred hhhhHHHHHHHhhcCCCCChhhHHHHHHHHH---HHHHhhHHhHHHHHhhcCCCCCcccccc--ccc-chhhhhHHHHhh
Q 040591 139 FSSFEASYLQLQTAHVPFVEENIKAADRALV---SHLQRLSDFKQFYKDVCKNPDFIGAEED--LAI-GSCLEHRVQENQ 212 (514)
Q Consensus 139 VSslKaAY~qLQ~Ah~PyDpekI~aAD~avV---sEL~~Ls~LK~~y~~~~k~~~~~~~~~~--~~~-~s~l~aeiqEqq 212 (514)
+..++.....|..---.| ++.++.+...+. +++..+-.....|.. ++.=+.|...- .|. -..+..++.+.+
T Consensus 236 l~~l~~~i~~l~~~i~~~-~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~--~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~ 312 (562)
T PHA02562 236 IEELTDELLNLVMDIEDP-SAALNKLNTAAAKIKSKIEQFQKVIKMYEK--GGVCPTCTQQISEGPDRITKIKDKLKELQ 312 (562)
T ss_pred HHHHHHHHHHHhcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCCcCCCcHHHHHHHHHHHHHHH
Confidence 334444555554322223 244555544443 444555555555533 22223332211 111 012445555555
Q ss_pred hhhhhHHHHHH
Q 040591 213 SKLRTLEIVSN 223 (514)
Q Consensus 213 ~~l~tyE~~~~ 223 (514)
+.++.++....
T Consensus 313 ~~l~~l~~~i~ 323 (562)
T PHA02562 313 HSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 68
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.08 E-value=24 Score=32.46 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Q 040591 221 VSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 221 ~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~ 255 (514)
++.+|+++++.+|.|+..|+.++..+......+..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~ 51 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELRE 51 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777778888888887777777777666555443
No 69
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=46.27 E-value=1.4e+02 Score=29.76 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=20.5
Q ss_pred ccCcchhhhHHHHHHHHhcCCC--CCCcCC
Q 040591 318 KKGHNQYALLSYVCLGMFRGFD--LEGFGL 345 (514)
Q Consensus 318 K~~h~kyalEAyv~r~MF~gFe--~~~F~l 345 (514)
+..+..+-+.+|+|+.||..=+ +..|++
T Consensus 170 ~~tDnI~ilidy~c~kf~~~~~qir~~fgI 199 (209)
T COG5124 170 KTTDNIEILIDYLCKKFFLKPEQIRKEFGI 199 (209)
T ss_pred hhhhhHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 4556788999999999998644 244544
No 70
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=45.56 E-value=1.8e+02 Score=33.21 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=44.8
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 040591 207 RVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLSNNLSSSFDVLLTVRVFDSLLHDVCRAAH 286 (514)
Q Consensus 207 eiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~~~~ls~~~~~lsp~~F~~~l~~A~~Svr 286 (514)
.+++++..++.++.-+.+++.++.....++..+++++.++++...++.+.... .-...........++..+.
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~ 493 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKIN--------AFELERAITIADKAKKTLK 493 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHHHHHH
Confidence 45666666666666667777777777777777777777666655444332211 1123334444444455555
Q ss_pred HHHHHHHHH
Q 040591 287 KFTKILIDL 295 (514)
Q Consensus 287 ~FaK~Li~~ 295 (514)
.|-..+...
T Consensus 494 ~~~~~l~~~ 502 (650)
T TIGR03185 494 EFREKLLER 502 (650)
T ss_pred HHHHHHHHH
Confidence 554444443
No 71
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.97 E-value=48 Score=33.24 Aligned_cols=49 Identities=16% Similarity=0.419 Sum_probs=37.5
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSK 252 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~ 252 (514)
|.++++..+..++..+...++|++.+.....++.+|.++++++......
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777888888888888888888888877764444
No 72
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.68 E-value=72 Score=30.62 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 218 LEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 218 yE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
++.-+++|+.++.+++.++..||++.+.+++
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566666666666666666666665543
No 73
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.41 E-value=1.5e+02 Score=35.38 Aligned_cols=120 Identities=12% Similarity=0.142 Sum_probs=69.4
Q ss_pred CCccccchhhhhhhHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCCh-hhH---HHHHHHHHHHHHhhHHhHHHHHhhcCC
Q 040591 113 SSKSTVTNRLVNTQLANTLISSIFATFSSFEASYLQLQTAHVPFVE-ENI---KAADRALVSHLQRLSDFKQFYKDVCKN 188 (514)
Q Consensus 113 ~~~~~~~~~~~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDp-ekI---~aAD~avVsEL~~Ls~LK~~y~~~~k~ 188 (514)
+|..|++--...+++|++.+.-+---|-+..+.|++||.- ||. .+| .-||-=+-|--+.+++|+++--+.+.
T Consensus 613 tN~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq---~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~- 688 (1104)
T COG4913 613 TNDAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQ---ANALAHIQALNFASIDLPSAQRQIAELQARLERLTH- 688 (1104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcC-
Confidence 4667788788889999999998888999999999999962 110 111 12333344445566777766655321
Q ss_pred CCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Q 040591 189 PDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNS 251 (514)
Q Consensus 189 ~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~ 251 (514)
++.. ++-.+..+...++..+-|+.+.++--.|-..+|+.|..++..-+
T Consensus 689 ----------t~~~-----~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~ 736 (1104)
T COG4913 689 ----------TQSD-----IAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSR 736 (1104)
T ss_pred ----------ChhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11112223333444455555555555566666666665554333
No 74
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=43.27 E-value=27 Score=40.03 Aligned_cols=30 Identities=3% Similarity=0.236 Sum_probs=13.0
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHhh
Q 040591 121 RLVNTQLANTLISSIFATFSSFEASYLQLQT 151 (514)
Q Consensus 121 ~~~~~~~~eali~~lFa~VSslKaAY~qLQ~ 151 (514)
.+.+++.-+||-|.+ .+--++|...-++-.
T Consensus 337 ~~~ddH~RDALAAA~-kAY~~yk~kl~~vEr 366 (652)
T COG2433 337 SVSDDHERDALAAAY-KAYLAYKPKLEKVER 366 (652)
T ss_pred CCCCchHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344555555554433 233344444444433
No 75
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.27 E-value=93 Score=30.10 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Q 040591 223 NRLQEEIDAKDSQVAALRKQLGEIHKCNSKL 253 (514)
Q Consensus 223 ~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~L 253 (514)
.+|++++..+|..|..+-.+|.++.+....+
T Consensus 32 ~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 32 QQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777666555443
No 76
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.20 E-value=1.2e+02 Score=28.13 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=51.9
Q ss_pred HHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 040591 168 LVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIH 247 (514)
Q Consensus 168 vVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~ 247 (514)
+..||..|.+=---|+.+.. .-...-...-+.|+..++.++|..++.|+.+.+.-++++.+|+.+|..+.
T Consensus 42 al~Ele~l~eD~~vYk~VG~----------llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 42 ALEELEKLDEDAPVYKKVGN----------LLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHhcCCcccHHHHHhhh----------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677776666666766311 11111123335677788999999999999999999999999999998876
Q ss_pred hhcc
Q 040591 248 KCNS 251 (514)
Q Consensus 248 ~~n~ 251 (514)
....
T Consensus 112 ~~~~ 115 (119)
T COG1382 112 GDAA 115 (119)
T ss_pred hccc
Confidence 6543
No 77
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=42.10 E-value=2.8e+02 Score=25.53 Aligned_cols=92 Identities=15% Similarity=0.263 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHH
Q 040591 130 TLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQ 209 (514)
Q Consensus 130 ali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiq 209 (514)
.-+.++=..+..++..+-.|+ +++..+..-+.+-..+...|+...+.... .+..+-+
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~--------~~~~~~ere~~~~~~~~~~l~~~~~~~~~---------------~~k~~ke 115 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLK--------EQLEELERELASAEEKERQLQKQLKSLEA---------------KLKQEKE 115 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 334444445555555555553 56666666666555566666655544111 1333333
Q ss_pred HhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 040591 210 ENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLG 244 (514)
Q Consensus 210 Eqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~ 244 (514)
|.+.+-..........+.+++.||-||..|+++|.
T Consensus 116 e~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 116 ELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444434455556779999999999999999885
No 78
>PHA00727 hypothetical protein
Probab=41.84 E-value=98 Score=31.30 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=54.3
Q ss_pred HHHH---hhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040591 170 SHLQ---RLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEI 246 (514)
Q Consensus 170 sEL~---~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el 246 (514)
.||+ .|-|||+.|-+..++.+. ...+..+-+.|| +.|..-|-.+-..|+.+|..-
T Consensus 12 eelrkaqsleelkqkyee~qkqi~d----------------gk~lkrlykvye------krefelk~~qf~qlkael~kk 69 (278)
T PHA00727 12 EELRKAQSLEELKQKYEEAQKQIAD----------------GKTLKRLYKVYE------KREFELKKQQFEQLKAELSKK 69 (278)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhc----------------cHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555 688999999885554222 233445556666 455555666667777777644
Q ss_pred Hhhccc--cccccccC---CCCCCCcccCHHHHHHHHHHHHHHHHH
Q 040591 247 HKCNSK--LSGKLSNN---LSSSFDVLLTVRVFDSLLHDVCRAAHK 287 (514)
Q Consensus 247 ~~~n~~--Le~rl~~~---~ls~~~~~lsp~~F~~~l~~A~~Svr~ 287 (514)
.++-++ ...|.+-. -+|. ..+.+|++..+.+.+....-
T Consensus 70 kkk~kkekvdv~vkv~kkwinsr---lftaehyvamlqqs~dglql 112 (278)
T PHA00727 70 KKKFKKEKVDVRVKVVKKWINSR---LFTAEHYVAMLQQSKDGLQL 112 (278)
T ss_pred HHHhhhhhcceeeehhHHHHhhh---hccHHHHHHHHHhcccchhh
Confidence 333222 11111100 0121 67899999999998877654
No 79
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.19 E-value=72 Score=33.62 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=33.4
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGK 256 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~r 256 (514)
+..++++.+..++..+....+.+.++..-+.++..|+.++++..+....|+..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666655665666666666666667777777776666655555543
No 80
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=40.83 E-value=90 Score=32.51 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=31.2
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHh
Q 040591 150 QTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKD 184 (514)
Q Consensus 150 Q~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~ 184 (514)
+.||+=-||-|+=+||-.-|.||-+++.+=....+
T Consensus 62 tKa~IKLN~KkLY~ADGyAVkELLKia~lLy~A~~ 96 (267)
T PF10234_consen 62 TKARIKLNPKKLYQADGYAVKELLKIASLLYSAMK 96 (267)
T ss_pred HHhheeecHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999988666655
No 81
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.82 E-value=1.4e+02 Score=34.20 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=35.2
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 040591 206 HRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKC 249 (514)
Q Consensus 206 aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~ 249 (514)
+-+....++.+.|+-.+++|+.++..|.+|+..|+.+-++|...
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677788888999999999999999999998888653
No 82
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=39.96 E-value=95 Score=30.07 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=32.7
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccc
Q 040591 212 QSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGK 256 (514)
Q Consensus 212 q~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~r 256 (514)
...|+.-+.....|+.|+.+-..+..-|.+++..++..|..|=+|
T Consensus 136 ~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 136 EEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344557788888888888888889999999888887555
No 83
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=39.77 E-value=1.3e+02 Score=30.74 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 219 EIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 219 E~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
|-.++-|++.+.+||++|-.|.+.|.+++.
T Consensus 73 e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~ 102 (272)
T KOG4552|consen 73 EQLMRTLEAHVEKRDEVIQQLQKNLKSAEV 102 (272)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456688899999999999999998888754
No 84
>PRK14142 heat shock protein GrpE; Provisional
Probab=39.32 E-value=32 Score=34.85 Aligned_cols=49 Identities=24% Similarity=0.422 Sum_probs=36.3
Q ss_pred CCCccccccceeccccccCC-CCCCeEEEEecCCceeCCeEEE-EEEEecc
Q 040591 461 RGVDFSMVYMEDVTRSKLVG-KTRAKVGFTVVPGFKVGRTVIQ-SQVYLCG 509 (514)
Q Consensus 461 rG~~F~~~YMEsV~~~~~~~-~~~~~VgftV~PGF~vg~tVik-crVYLs~ 509 (514)
.|..|||.+-|-|.....++ ...-.|.-.+-+|+++++.||+ ++|-++.
T Consensus 132 ~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL~dRVLRPA~V~Vsk 182 (223)
T PRK14142 132 EGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQLGEQVLRHALVGVVD 182 (223)
T ss_pred CCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEeCCEeccCceEEECC
Confidence 59999999999885322222 2234688888999999999997 5776664
No 85
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.65 E-value=3.1e+02 Score=30.17 Aligned_cols=102 Identities=14% Similarity=0.177 Sum_probs=51.3
Q ss_pred hhhhHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCcccccccccch
Q 040591 123 VNTQLANTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGS 202 (514)
Q Consensus 123 ~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s 202 (514)
.........+..|=..+..+..+..++|.... ..++ ..+++.++++.....
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~--------~~~~----~~~~i~el~~~i~~~----------------- 349 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMD--------EFNE----QSKKLLELKNKISTN----------------- 349 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH----HHHHHHHHHHHHHHH-----------------
Confidence 34444555677777777777777776666442 1111 133555555555441
Q ss_pred hhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Q 040591 203 CLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 203 ~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~ 255 (514)
...+.+.....+.++.-+.+|+.+......++.+|..+|.++......+++
T Consensus 350 --~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~k 400 (562)
T PHA02562 350 --KQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400 (562)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222233333344444555555555555555555555555555544444
No 86
>PRK14164 heat shock protein GrpE; Provisional
Probab=38.57 E-value=28 Score=35.06 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=33.8
Q ss_pred CCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEec
Q 040591 461 RGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLC 508 (514)
Q Consensus 461 rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs 508 (514)
.|..|||..-|-|.....+ + ...|+=.+-+||++|++||+ ++|-++
T Consensus 169 ~Ge~FDP~~HEAV~~~~~~-~-~~~V~~V~qkGY~l~dRVLRPA~V~Va 215 (218)
T PRK14164 169 EGDAFDPEIHEAVQDLSSG-D-EKVLGTVLRKGYRMGDRVLRTAMVIIA 215 (218)
T ss_pred CCCCCChhHhheeeeecCC-C-CCEeeEEeeCCcEECCEeccCceEEeC
Confidence 4999999999988643221 1 23577778999999999997 466554
No 87
>PRK09039 hypothetical protein; Validated
Probab=38.08 E-value=1.8e+02 Score=31.04 Aligned_cols=16 Identities=0% Similarity=0.270 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 040591 282 CRAAHKFTKILIDLMK 297 (514)
Q Consensus 282 ~~Svr~FaK~Li~~Mr 297 (514)
..-+..|..-+...|+
T Consensus 189 ~~~l~~~~~~~~~~l~ 204 (343)
T PRK09039 189 VQELNRYRSEFFGRLR 204 (343)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3445666666766665
No 88
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.83 E-value=2e+02 Score=28.13 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040591 221 VSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLSNNLSSSFDVLLTVRVFDSLLHDVCRAAHKFTKILIDLMKKAG 300 (514)
Q Consensus 221 ~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~~~~ls~~~~~lsp~~F~~~l~~A~~Svr~FaK~Li~~Mr~ag 300 (514)
.+.+|++++..-..+|..|+.+|+.+...+..-++| +..+.-+.....-+..+-+-|. ....
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR---------------~~~l~~l~~l~~~~~~l~~el~---~~~~ 131 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREESEER---------------EELLEELEELKKELKELKKELE---KYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH---------------HHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 457777787777788888888887775433322222 1122333333333333333222 3445
Q ss_pred CCHHHHhhhccccccc-----cccCcchhhhHHHHHHHH
Q 040591 301 WDLDLAANSVYRDINY-----AKKGHNQYALLSYVCLGM 334 (514)
Q Consensus 301 wdl~~aa~si~~~v~y-----~K~~h~kyalEAyv~r~M 334 (514)
||...-- .+...+.. .+=.+..|.+++|+.+.+
T Consensus 132 ~Dp~~i~-~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~ 169 (188)
T PF03962_consen 132 NDPEKIE-KLKEEIKIAKEAANRWTDNIFSLKSYLKKKF 169 (188)
T ss_pred cCHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 6654322 22111111 122467899999999975
No 89
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=37.78 E-value=1.4e+02 Score=26.36 Aligned_cols=70 Identities=27% Similarity=0.345 Sum_probs=40.2
Q ss_pred HHHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040591 167 ALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEI 246 (514)
Q Consensus 167 avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el 246 (514)
+|..||..|.+=..+|+-+.+ ..+- .-...-+......+...|..+++|+.+......++.++..+|.++
T Consensus 38 ~v~~eL~~l~~d~~vyk~VG~--vlv~--------~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 38 KALEELERLPDDTPVYKSVGN--LLVK--------TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHcCCCcchhHHHhch--hhhe--------ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888877788866311 1110 001222334445555556666777766666666666666666654
No 90
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.60 E-value=1.5e+02 Score=32.94 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhcccccc
Q 040591 235 QVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 235 Ei~~Lr~~L~el~~~n~~Le~ 255 (514)
++..+++.|++++.....|+.
T Consensus 88 ~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 88 DLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 344445555555554444443
No 91
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=36.72 E-value=42 Score=34.61 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=23.1
Q ss_pred HHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhH
Q 040591 172 LQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTL 218 (514)
Q Consensus 172 L~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~ty 218 (514)
.+++..|++.|..... .-..|+++|.||+..|..+
T Consensus 179 ~eki~~Lr~~y~~l~~------------~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 179 REKIAALRQRYNQLSN------------SIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 4578888888876211 1123788888888877555
No 92
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.52 E-value=1.5e+02 Score=25.81 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=25.4
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 040591 212 QSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIH 247 (514)
Q Consensus 212 q~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~ 247 (514)
...+...+..+++|+.++.....++..|+.+|.++.
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566667778888888888888887777764
No 93
>PRK11546 zraP zinc resistance protein; Provisional
Probab=35.57 E-value=2.9e+02 Score=26.40 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=23.8
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHH
Q 040591 150 QTAHVPFVEENIKAADRALVSHLQRLSDFKQFY 182 (514)
Q Consensus 150 Q~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y 182 (514)
|....|..||+.+++|.+.=.--.+...||+--
T Consensus 38 ~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL 70 (143)
T PRK11546 38 QQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQL 70 (143)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999988765555555555433
No 94
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=35.01 E-value=85 Score=28.22 Aligned_cols=40 Identities=15% Similarity=0.405 Sum_probs=23.3
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQL 243 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L 243 (514)
|...+...+..++....-+++|+..++....++..||+++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555555555555555666666666666666665543
No 95
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.01 E-value=59 Score=37.09 Aligned_cols=43 Identities=12% Similarity=0.226 Sum_probs=23.1
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEI 246 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el 246 (514)
+..++++.+..++.++.-..++++++..-+.++.++..++.++
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666555555555555555555555555555444444
No 96
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=34.69 E-value=1.4e+02 Score=29.79 Aligned_cols=87 Identities=21% Similarity=0.375 Sum_probs=55.7
Q ss_pred hhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhc---CCCCCcccccccccchhhhhHHHHhhhhhh
Q 040591 140 SSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVC---KNPDFIGAEEDLAIGSCLEHRVQENQSKLR 216 (514)
Q Consensus 140 SslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~---k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~ 216 (514)
++++..|-+|... .+.||++--.|=+.|-+.- ++++. ..++.-+.|..+.
T Consensus 40 ~~~~~KY~~lR~E---------------lI~ELkqsKklydnYYkL~~KY~~LK~------------~~~~~~~l~~~i~ 92 (196)
T PF15272_consen 40 TSYKEKYQQLRQE---------------LINELKQSKKLYDNYYKLYSKYQELKK------------SSKQSEDLQSRIS 92 (196)
T ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhHhhHHHHHHHH
Confidence 5667777777653 7788886555544443310 01111 2344445555554
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccc
Q 040591 217 TLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGK 256 (514)
Q Consensus 217 tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~r 256 (514)
..| ++|..++..||.+|..+.++|..++.++..|+.+
T Consensus 93 ~le---~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~ 129 (196)
T PF15272_consen 93 NLE---KQLVDQMIEKDREIRTLQDELLSLELRNKELQNE 129 (196)
T ss_pred HHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 433 6777788899999999999999998888877743
No 97
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=34.25 E-value=94 Score=29.75 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=34.5
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKC 249 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~ 249 (514)
+.-+.|..|. .|+++.-|+.|++.|..+|..+|+.++++.+.
T Consensus 119 llNeyRPhQA----RetLi~~me~Ql~~kr~~i~~i~~~~~~~~~~ 160 (162)
T PF05983_consen 119 LLNEYRPHQA----RETLIMMMEEQLEEKREEIEEIRKVCEKAREV 160 (162)
T ss_dssp HHHHTHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666665 47788899999999999999999999988753
No 98
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.63 E-value=58 Score=38.06 Aligned_cols=22 Identities=23% Similarity=-0.007 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040591 274 FDSLLHDVCRAAHKFTKILIDL 295 (514)
Q Consensus 274 F~~~l~~A~~Svr~FaK~Li~~ 295 (514)
+..+|.+|++=+...-..++..
T Consensus 620 LfsaLg~akrq~ei~~~~~~~~ 641 (697)
T PF09726_consen 620 LFSALGDAKRQLEIAQGQLRKK 641 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778887777766666543
No 99
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.31 E-value=4.9e+02 Score=29.20 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=76.9
Q ss_pred hhhhHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCccccccccc--
Q 040591 123 VNTQLANTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAI-- 200 (514)
Q Consensus 123 ~~~~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~-- 200 (514)
..++.-|.++..|=++||-.++ -+|+|+| .+..|-+-|-.|+.+|-...+..+.. ..|.. .++
T Consensus 338 ~~~q~sE~ll~tlq~~iSqaq~-~vq~qma-------~lv~a~e~i~~e~~rl~q~nd~l~~~-~~l~t------~~Qq~ 402 (542)
T KOG0993|consen 338 EERQHSEDLLVTLQAEISQAQS-EVQKQMA-------RLVVASETIADEDSRLRQINDLLTTV-GELET------QVQQA 402 (542)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhc-ccccc------chhHh
Confidence 3344557788889999998886 5889988 46677777888999999988888762 12221 233
Q ss_pred -chhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHhhccccccccc
Q 040591 201 -GSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDS-------QVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 201 -~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDs-------Ei~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
.-.+.+-+.+.+.++.-|. ..|++++++-|- +|..|++.|....-....||..+.
T Consensus 403 e~~~lp~ave~l~ql~~~~r---~~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~le~ql~ 465 (542)
T KOG0993|consen 403 EVQNLPAAVEQLAQLYKQRR---TSLQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQELEWQLD 465 (542)
T ss_pred hhhcchhhHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1224555556666554443 445555555443 677888888877766666666543
No 100
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=32.93 E-value=2.8e+02 Score=32.91 Aligned_cols=121 Identities=16% Similarity=0.214 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhh
Q 040591 126 QLANTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLE 205 (514)
Q Consensus 126 ~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~ 205 (514)
..|++|=+++-+---++-.||-.||.+---- .|..++--.-+|- .+++|+...++...+ +....+.++
T Consensus 544 ~~~~~le~~~~a~qat~d~a~~Dlqk~nrlk-Qdear~~~~~lvq---qv~dLR~~L~~~Eq~--------aarrEd~~R 611 (961)
T KOG4673|consen 544 ALAAALEAQALAEQATNDEARSDLQKENRLK-QDEARERESMLVQ---QVEDLRQTLSKKEQQ--------AARREDMFR 611 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHhhhh-hhHHHHHHHHHHH---HHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 3355566666666666666777776653221 2223332233332 345566655552111 112334589
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHhhccccccccc
Q 040591 206 HRVQENQSKLRTLEIVSNRLQEEIDAKDS----QVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 206 aeiqEqq~~l~tyE~~~~kLe~e~~~KDs----Ei~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
.||+++|.++...|-.|+.|-+++-.--. +|..|.+-|+.....-.++|+.|+
T Consensus 612 ~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~ 668 (961)
T KOG4673|consen 612 GEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLN 668 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999888888777654333 677777777666554444454443
No 101
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.77 E-value=85 Score=30.90 Aligned_cols=45 Identities=24% Similarity=0.446 Sum_probs=22.0
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
+..+|.+++.++-.++-....+..+..++|+||.+|+.....++.
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~ 173 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKE 173 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444555555556555555444443
No 102
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=31.74 E-value=3.7e+02 Score=26.01 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHhhcCCCC
Q 040591 139 FSSFEASYLQLQTAHVPF 156 (514)
Q Consensus 139 VSslKaAY~qLQ~Ah~Py 156 (514)
...||.+|-+||..+||=
T Consensus 22 ~~~L~~~yr~lq~~~HPD 39 (176)
T PRK03578 22 EAALDAAYRTVQAQVHPD 39 (176)
T ss_pred HHHHHHHHHHHHHHHCcC
Confidence 457999999999999984
No 103
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=31.53 E-value=94 Score=32.83 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=49.8
Q ss_pred HhhHHhHHHHHhhcC---CCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 040591 173 QRLSDFKQFYKDVCK---NPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKC 249 (514)
Q Consensus 173 ~~Ls~LK~~y~~~~k---~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~ 249 (514)
..|+++-..|++.-= ++|- -.+.|.-+|.-++-.|...|-+.-.|+.+++.|-.+..++|..++.+...
T Consensus 84 ~~l~evEekyrkAMv~naQLDN--------ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e 155 (302)
T PF09738_consen 84 DSLAEVEEKYRKAMVSNAQLDN--------EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREE 155 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhch--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888887100 1111 12346777777777777777777788888888888777777766666655
Q ss_pred cccccc
Q 040591 250 NSKLSG 255 (514)
Q Consensus 250 n~~Le~ 255 (514)
...|..
T Consensus 156 ~~~Lre 161 (302)
T PF09738_consen 156 LDELRE 161 (302)
T ss_pred HHHHHH
Confidence 554444
No 104
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=31.44 E-value=4e+02 Score=29.63 Aligned_cols=45 Identities=22% Similarity=0.153 Sum_probs=27.9
Q ss_pred HhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Q 040591 210 ENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 210 Eqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le 254 (514)
+....+..|..-..+|..+++.-+.++..|+++|++++++...+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555666666666666666666666666666666666554443
No 105
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.29 E-value=3e+02 Score=27.60 Aligned_cols=56 Identities=14% Similarity=0.306 Sum_probs=32.0
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHhhcccccccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKD---------SQVAALRKQLGEIHKCNSKLSGKLSN 259 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KD---------sEi~~Lr~~L~el~~~n~~Le~rl~~ 259 (514)
+..+....+.+++..++..++|.+-+++.+ .++.+.+.+|+.++...+.|++|..-
T Consensus 130 vT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 130 VTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 445555666666666666666655554332 14455555666666666666665543
No 106
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=30.89 E-value=2.5e+02 Score=28.18 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=14.7
Q ss_pred CcchhhhHHHHHHHHhcC
Q 040591 320 GHNQYALLSYVCLGMFRG 337 (514)
Q Consensus 320 ~h~kyalEAyv~r~MF~g 337 (514)
.+..|++-+|+|+.|+..
T Consensus 168 tDnI~il~dy~~rkf~~e 185 (203)
T KOG3433|consen 168 TDNIFILIDYLYRKFGLE 185 (203)
T ss_pred hhhHHHHHHHHHHhcCCC
Confidence 355799999999999763
No 107
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.79 E-value=5.3e+02 Score=26.26 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=31.6
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
++.++++.++.+++.+.-...|+++.+..+.|.++|.++-..++.
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777777777665554443
No 108
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=30.60 E-value=5e+02 Score=26.67 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=22.9
Q ss_pred hhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHh
Q 040591 141 SFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKD 184 (514)
Q Consensus 141 slKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~ 184 (514)
.++.+-.+|+.+..-+....|..+...+...-..|...++.|.+
T Consensus 89 ~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~ak~~l~~a~~~~~r 132 (331)
T PRK03598 89 NVSVAQAQLDLMLAGYRDEEIAQARAAVKQAQAAYDYAQNFYNR 132 (331)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555666666655555444445555554444
No 109
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.53 E-value=1.9e+02 Score=24.80 Aligned_cols=53 Identities=21% Similarity=0.215 Sum_probs=44.7
Q ss_pred hhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Q 040591 203 CLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 203 ~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~ 255 (514)
.++++|-|+..+++-=|.++..|...+-.-.-.|+.++.+|+-+..+...++.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 36788888888888889999999999999999999999999988876666544
No 110
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.51 E-value=1.8e+02 Score=23.98 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=27.4
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 040591 208 VQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKC 249 (514)
Q Consensus 208 iqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~ 249 (514)
+.+...+++..+....+||.....-+.+|..+.++|+++...
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455566777777777777777777877777653
No 111
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=30.33 E-value=2.8e+02 Score=32.64 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=28.0
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 040591 211 NQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKC 249 (514)
Q Consensus 211 qq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~ 249 (514)
.+.+.+..|.-+++|+.|++.||.++..|..++.++...
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777888888888888888888777666553
No 112
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.96 E-value=6.3e+02 Score=26.02 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=49.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHH
Q 040591 130 TLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQ 209 (514)
Q Consensus 130 ali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiq 209 (514)
..+.++=+-.++++.+|+.+|.+- +.+.-=....-+||+.+++=+..-.. +. +.+ .....-+.|..+++
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~-----e~le~qv~~~e~ei~~~r~r~~~~e~--kl-~~v---~~~~e~~aL~~E~~ 99 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIEL-----EDLENQVSQLESEIQEIRERIKRAEE--KL-SAV---KDERELRALNIEIQ 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH--HH-hcc---ccHHHHHHHHHHHH
Confidence 344555555666777777777652 44444444555666655554444333 21 221 11222233555555
Q ss_pred HhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040591 210 ENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEI 246 (514)
Q Consensus 210 Eqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el 246 (514)
..+....+.+--+..|..++.....+|..|+.++...
T Consensus 100 ~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 100 IAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444444344444444444444444433333
No 113
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=29.37 E-value=41 Score=24.95 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCCHHHHhhhc
Q 040591 291 ILIDLMKKAGWDLDLAANSV 310 (514)
Q Consensus 291 ~Li~~Mr~agwdl~~aa~si 310 (514)
.-+..|+.++|||..|++..
T Consensus 17 ~A~~~L~~~~wdle~Av~~y 36 (43)
T PF14555_consen 17 VAIQYLEANNWDLEAAVNAY 36 (43)
T ss_dssp HHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 34577899999999999764
No 114
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=29.28 E-value=3.8e+02 Score=31.91 Aligned_cols=10 Identities=10% Similarity=-0.127 Sum_probs=5.2
Q ss_pred hhHHHHHHHH
Q 040591 325 ALLSYVCLGM 334 (514)
Q Consensus 325 alEAyv~r~M 334 (514)
|+|+.+-..+
T Consensus 540 Aie~~lg~~l 549 (1164)
T TIGR02169 540 AIEVAAGNRL 549 (1164)
T ss_pred HHHHHhhhhh
Confidence 5665554443
No 115
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=29.19 E-value=4e+02 Score=31.39 Aligned_cols=114 Identities=14% Similarity=0.218 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhh--HHh---HHHHHhhcCCCCCccccccccc
Q 040591 126 QLANTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRL--SDF---KQFYKDVCKNPDFIGAEEDLAI 200 (514)
Q Consensus 126 ~~~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~L--s~L---K~~y~~~~k~~~~~~~~~~~~~ 200 (514)
..+|.-=-.|.+.||.||.-|+-|-.-+.-| .+|.+-+..+ ..|+.++ +++ +-.|.. +....+.
T Consensus 170 tsLETqKlDLmaevSeLKLkltalEkeq~e~-E~K~R~se~l-~qevn~~kv~e~~~erlqye~---klkstk~------ 238 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTALEKEQNET-EKKLRLSENL-MQEVNQSKVGEVVQERLQYET---KLKSTKG------ 238 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhH-HHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHh---hcccccc------
Confidence 3344444568899999999999997666544 3555555432 2333311 222 122332 3333111
Q ss_pred chhhhhHHHHhhhh-----hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Q 040591 201 GSCLEHRVQENQSK-----LRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKL 253 (514)
Q Consensus 201 ~s~l~aeiqEqq~~-----l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~L 253 (514)
-.|.++||.+. ++-.+.++++|..+-..+-..+..||..|+++.+.|..-
T Consensus 239 ---e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~k 293 (861)
T KOG1899|consen 239 ---EMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQK 293 (861)
T ss_pred ---hhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhh
Confidence 23445554432 222344455555555555555667777777777666433
No 116
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.65 E-value=96 Score=34.30 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=20.3
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEI 246 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el 246 (514)
|+.+|.++...+...+.-+.+.+..+.+.+..|..+...|..+
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 4444555444444444444444444444444444444444443
No 117
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.52 E-value=72 Score=35.75 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=15.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q 040591 223 NRLQEEIDAKDSQVAALRKQLG 244 (514)
Q Consensus 223 ~kLe~e~~~KDsEi~~Lr~~L~ 244 (514)
+++++.++..++|+.+|+.++.
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5556666677777777777773
No 118
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=28.34 E-value=2.8e+02 Score=26.77 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=39.8
Q ss_pred HHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCC
Q 040591 133 SSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDF 191 (514)
Q Consensus 133 ~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~ 191 (514)
.++-.-....++=|-.++. ||+++..|+.-+--.|..+-+|=..|.+..++|..
T Consensus 101 ~~~~~~~~~~~~I~~~v~~-----~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~~~ 154 (199)
T PF10112_consen 101 EKVSRIEKIARRIFKYVEK-----DPERLTQARKFLYYYLPTAVKLLEKYAELESQPVK 154 (199)
T ss_pred HHHHHHHHHHHHHHHHHHH-----CHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhccCC
Confidence 3333334444444555554 79999999999999999999999999997665443
No 119
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=28.32 E-value=4.6e+02 Score=31.95 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccccCCCC--------------------------------------
Q 040591 222 SNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLSNNLSS-------------------------------------- 263 (514)
Q Consensus 222 ~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~~~~ls-------------------------------------- 263 (514)
+..|+..+..||.+..+++.++++.......+++-+++.++.
T Consensus 528 ~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~tQ~~~~~~~~il~~~~~~~~q~lq~al~~ 607 (980)
T KOG0980|consen 528 LAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELDSSASTEAGITQLQDDLNDPILDGSLASGIQALQNALYQ 607 (980)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 466788889999998888887765533322232221111100
Q ss_pred ---C--CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040591 264 ---S--FDVLLTVRVFDSLLHDVCRAAHKFTKILIDLM 296 (514)
Q Consensus 264 ---~--~~~~lsp~~F~~~l~~A~~Svr~FaK~Li~~M 296 (514)
. ....-+|++++.++..+..++-+|.+.+-+.+
T Consensus 608 ld~P~~~~~~~~p~~Llst~~~~s~n~~~~e~~~~~yl 645 (980)
T KOG0980|consen 608 LDSPLHWRCLTSPDFLLSTAENASVNATQFETSFNNYL 645 (980)
T ss_pred cCCCcccCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 11266899999999999999999999876665
No 120
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.61 E-value=7.3e+02 Score=26.46 Aligned_cols=132 Identities=11% Similarity=0.122 Sum_probs=75.1
Q ss_pred HhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCcccccccccchh----hhhHHHHhhhhhhhHHHHHHH
Q 040591 149 LQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSC----LEHRVQENQSKLRTLEIVSNR 224 (514)
Q Consensus 149 LQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~----l~aeiqEqq~~l~tyE~~~~k 224 (514)
||.|-+--+|-|+=+||.+-|+||.....| +|.--...|+. +.+|+.+. +...|+|.+. .+.
T Consensus 2 ~~~a~i~~np~kly~a~~~~~~el~~~~~l--l~~~~~~~~~~----d~~~~~~q~~~~i~~k~~e~r~--------~r~ 67 (338)
T KOG3647|consen 2 VTKAAIRINPRKLYAAAAVTAAELQKVTRL--LTSPGQNEADN----DEEDQRDQYRSLIGDKIEELRK--------ARE 67 (338)
T ss_pred CcchhhccCHHHHHHHhHHHHHHHHHHHHH--HhCcCcCCCCC----CcchHHHHHHHHHHHHHHHHHH--------HHH
Confidence 567788899999999999999999886554 45331112222 23455443 4555665443 256
Q ss_pred HHHHHhhhhHHHHHHHH-HHHHHHhhccccccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 040591 225 LQEEIDAKDSQVAALRK-QLGEIHKCNSKLSGKLSNNLSSSFDVLLTVRVFDSLLHDVCRAAHKFTKILIDLMKKAGWDL 303 (514)
Q Consensus 225 Le~e~~~KDsEi~~Lr~-~L~el~~~n~~Le~rl~~~~ls~~~~~lsp~~F~~~l~~A~~Svr~FaK~Li~~Mr~agwdl 303 (514)
|-.++-.+..-|.+|-. ++---+.......+ .+-.-.-+.++..|..+|..=...+-.++.+...|.
T Consensus 68 lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~R------------plel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasde 135 (338)
T KOG3647|consen 68 LATDLTQRGTTICEMLSKELLHKESLMSAAQR------------PLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDE 135 (338)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHHHHHHcC------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 67777777777765432 11111111111111 122233456677777777776666777777766665
Q ss_pred HHH
Q 040591 304 DLA 306 (514)
Q Consensus 304 ~~a 306 (514)
.+-
T Consensus 136 a~L 138 (338)
T KOG3647|consen 136 AAL 138 (338)
T ss_pred HHH
Confidence 443
No 121
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=25.90 E-value=40 Score=38.27 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=37.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccCHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 040591 227 EEIDAKDSQVAALRKQLGEIHKCNSKLSGKLSNNLSSSFDVLLTVRVFDSLLHDVCRAA---HKFTKILIDLMK 297 (514)
Q Consensus 227 ~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~~~~ls~~~~~lsp~~F~~~l~~A~~Sv---r~FaK~Li~~Mr 297 (514)
.|++.--+.|..|+.+|.+++..|..|++++..-... + .-.-..|...+..=-..| |.=|..|+.+|.
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~q-l--~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq 366 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQ-L--DEDQRSFEQALNDKDAEIAKMREECQQLSVELQ 366 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhh-h--hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555567777888888888888888766531110 0 112345555555433333 444555555554
No 122
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=25.68 E-value=2.8e+02 Score=28.13 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=35.5
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccCHHHHHHHHHHHHHHH
Q 040591 206 HRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLSNNLSSSFDVLLTVRVFDSLLHDVCRAA 285 (514)
Q Consensus 206 aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~~~~ls~~~~~lsp~~F~~~l~~A~~Sv 285 (514)
.++.|++....|-| -++.|+... ..+-..+++.+..++.....|-.|- +.++-+.|-+.+++
T Consensus 64 de~~E~r~~~~tke-~lk~l~~~~---~~~f~a~~edi~rlE~~i~~lgaRw---------GilsEdAFR~gv~e----- 125 (231)
T COG5493 64 DEKLEVRKQKATKE-DLKLLQRFQ---EEEFRATKEDIKRLETIITGLGARW---------GILSEDAFRQGVRE----- 125 (231)
T ss_pred HHHHHHHHHHhhHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh---------ccccHHHHHHHHHH-----
Confidence 34555555554444 233333333 3334445555555554444433332 25677777666655
Q ss_pred HHHHHHHHHHHHhcCCC
Q 040591 286 HKFTKILIDLMKKAGWD 302 (514)
Q Consensus 286 r~FaK~Li~~Mr~agwd 302 (514)
.|++.||-
T Consensus 126 ---------il~e~g~~ 133 (231)
T COG5493 126 ---------ILREVGYV 133 (231)
T ss_pred ---------HHHHhchh
Confidence 56777873
No 123
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.62 E-value=9e+02 Score=30.66 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHhhcC----CCCChhhHHHHHHHH
Q 040591 139 FSSFEASYLQLQTAH----VPFVEENIKAADRAL 168 (514)
Q Consensus 139 VSslKaAY~qLQ~Ah----~PyDpekI~aAD~av 168 (514)
...+..+..+++.|- .||+++...++..++
T Consensus 820 ~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL 853 (1353)
T TIGR02680 820 AAAWKQARRELERDAADLDLPTDPDALEAVGLAL 853 (1353)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHH
Confidence 334455555555554 499999999976665
No 124
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.49 E-value=3.3e+02 Score=25.76 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=7.6
Q ss_pred HHHHhhcCCCCChhhH
Q 040591 146 YLQLQTAHVPFVEENI 161 (514)
Q Consensus 146 Y~qLQ~Ah~PyDpekI 161 (514)
|+.....-.++.|+.+
T Consensus 59 ~~~~~~~~~~~~~~~~ 74 (191)
T PF04156_consen 59 CLLSKRPVQSVRPQQI 74 (191)
T ss_pred HHHHccccccchHHHH
Confidence 3444444455555444
No 125
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=25.39 E-value=2.1e+02 Score=28.79 Aligned_cols=53 Identities=28% Similarity=0.423 Sum_probs=34.0
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccccc
Q 040591 205 EHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 205 ~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl 257 (514)
...+.+.+..+.+-..-++.++.++..+.+|+..|+++++.++..+..|-..+
T Consensus 51 ~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 51 ESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREEL 103 (202)
T ss_pred HHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHH
Confidence 34455555555555555566777777788888888888777776666655433
No 126
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.86 E-value=1e+02 Score=31.54 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=44.9
Q ss_pred hhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccc
Q 040591 202 SCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 202 s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
+-++.-|.-|+-+. .....+||+|++.-..++..|+.+++.++..|.+|=+|+.
T Consensus 78 ~siLpIVtsQRDRF---R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 78 SSILPIVTSQRDRF---RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred ccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777777775 4466899999999999999999999999999999877653
No 127
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=24.60 E-value=1.5e+02 Score=30.44 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=24.6
Q ss_pred CCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE
Q 040591 462 GVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ 502 (514)
Q Consensus 462 G~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik 502 (514)
|..|||.-=|.|..-.......-.|..---=||++++++|+
T Consensus 183 gekFDPn~HEAvfq~p~~~k~pgtV~~v~k~Gy~L~~R~IR 223 (236)
T KOG3003|consen 183 GEKFDPNEHEAVFQVPDAAKEPGTVALVTKKGYKLNGRVIR 223 (236)
T ss_pred CCCCCcchhheeEeccccCCCCCeEEEEeccCcccCCeeec
Confidence 66777766666543111112334566666678889888876
No 128
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.56 E-value=2e+02 Score=28.46 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=40.8
Q ss_pred hhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 203 CLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 203 ~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
.+..||+-++..|+-+....+.++..++.+|.++..++.+|..+..
T Consensus 65 ~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 65 RHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999988877654
No 129
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=24.54 E-value=7.3e+02 Score=24.91 Aligned_cols=28 Identities=7% Similarity=0.170 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040591 270 TVRVFDSLLHDVCRAAHKFTKILIDLMK 297 (514)
Q Consensus 270 sp~~F~~~l~~A~~Svr~FaK~Li~~Mr 297 (514)
.....+.++.+|+...-.-...++..|-
T Consensus 118 ~~~~vv~~l~ea~~~t~si~~sll~~ls 145 (231)
T PF03087_consen 118 HLSAVVRVLREAREITVSIFESLLSFLS 145 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777776644333344444443
No 130
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=24.48 E-value=3e+02 Score=25.12 Aligned_cols=43 Identities=28% Similarity=0.364 Sum_probs=29.2
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHhh
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDS-QVAALRKQLGEIHKC 249 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDs-Ei~~Lr~~L~el~~~ 249 (514)
...+|.+.+..++.++ ..|+.+...-|. .|.--+++|++....
T Consensus 68 ~q~ki~~~~~kV~ere---~eL~eA~~~G~~~KI~K~~~KL~ea~~e 111 (115)
T PF06476_consen 68 RQQKIAEKQQKVAERE---AELKEAQAKGDSDKIAKRQKKLAEAKAE 111 (115)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 5677888888888888 566555555555 565556677777654
No 131
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.37 E-value=1.5e+02 Score=28.39 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=23.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhcccccccc
Q 040591 226 QEEIDAKDSQVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 226 e~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl 257 (514)
+++....+.||..|+++|++.+.....|.++.
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667789999999998877776666554
No 132
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.37 E-value=50 Score=26.44 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccc
Q 040591 221 VSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 221 ~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
+..+|+++-..+..+-...++.|.++...|..|...|.
T Consensus 9 Le~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 9 LERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 66888888877777777778888888888888766554
No 133
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.12 E-value=3.9e+02 Score=29.11 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 040591 219 EIVSNRLQEEIDAKDSQVAALRKQLGEIHKCN 250 (514)
Q Consensus 219 E~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n 250 (514)
+++.+.||+++..-+..|+-|+.+.+|+..+.
T Consensus 252 ~~~~etLEqq~~~L~~niDIL~~k~~eal~~~ 283 (365)
T KOG2391|consen 252 VAMKETLEQQLQSLQKNIDILKSKVREALEKA 283 (365)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 66778888888888888888888888854433
No 134
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=24.09 E-value=72 Score=29.34 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhcccccc
Q 040591 234 SQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 234 sEi~~Lr~~L~el~~~n~~Le~ 255 (514)
.|++-||+++.|+..+|+.||.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~ 88 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALER 88 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999988875
No 135
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=23.80 E-value=1.9e+02 Score=29.83 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHHHHH
Q 040591 129 NTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALVSHL 172 (514)
Q Consensus 129 eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL 172 (514)
..||..||+.+...... |=||| ||++|-..|
T Consensus 6 ~qLI~~lf~RL~~ae~~---------prD~e----Ae~lI~~~~ 36 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQ---------PRDPE----AEALIAQAL 36 (247)
T ss_pred HHHHHHHHHHHHhccCC---------CCCHH----HHHHHHHHH
Confidence 45788888877665543 77776 465554444
No 136
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=23.80 E-value=1.5e+02 Score=30.57 Aligned_cols=48 Identities=29% Similarity=0.396 Sum_probs=37.5
Q ss_pred hhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 040591 203 CLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCN 250 (514)
Q Consensus 203 ~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n 250 (514)
.+.++..|.|..|+..|.-...|+...+..--++..|+.+++++.-+.
T Consensus 160 ele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 160 ELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 477778888888888887777788888888888888888888776543
No 137
>PRK09343 prefoldin subunit beta; Provisional
Probab=23.73 E-value=4.1e+02 Score=24.08 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=45.5
Q ss_pred HHHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040591 167 ALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEI 246 (514)
Q Consensus 167 avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el 246 (514)
.+..||..|.+=-..|+.+ -|..+. .....-+.+...++...+.-++.|+.+.......+.++..+|.++
T Consensus 42 ~~~~EL~~L~~d~~VYk~V--G~vlv~--------qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 42 KALEELEKLPDDTPIYKIV--GNLLVK--------VDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHcCCCcchhHHHh--hHHHhh--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777776656667542 112211 112333455666777777778888888777777777777777777
Q ss_pred Hhh
Q 040591 247 HKC 249 (514)
Q Consensus 247 ~~~ 249 (514)
...
T Consensus 112 l~~ 114 (121)
T PRK09343 112 LSK 114 (121)
T ss_pred HHh
Confidence 653
No 138
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.72 E-value=1.2e+02 Score=26.87 Aligned_cols=26 Identities=19% Similarity=0.366 Sum_probs=10.2
Q ss_pred HHHHHHHhhh--hHHHHHHHHHHHHHHh
Q 040591 223 NRLQEEIDAK--DSQVAALRKQLGEIHK 248 (514)
Q Consensus 223 ~kLe~e~~~K--DsEi~~Lr~~L~el~~ 248 (514)
.++|.+++.- ..++..|+-.|.++..
T Consensus 52 ~~lE~~l~~LPt~~dv~~L~l~l~el~G 79 (106)
T PF10805_consen 52 QALETKLEHLPTRDDVHDLQLELAELRG 79 (106)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4444444433 2233344444443333
No 139
>PRK14156 heat shock protein GrpE; Provisional
Probab=23.48 E-value=86 Score=30.70 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=31.6
Q ss_pred ccccccceeccccccC-CCCCCeEEEEecCCceeCCeEEE-EEEEe
Q 040591 464 DFSMVYMEDVTRSKLV-GKTRAKVGFTVVPGFKVGRTVIQ-SQVYL 507 (514)
Q Consensus 464 ~F~~~YMEsV~~~~~~-~~~~~~VgftV~PGF~vg~tVik-crVYL 507 (514)
.|||.+.|-|.....+ ....-.|.=.+-+|+++|++||+ ++|-+
T Consensus 130 ~FDP~~HEAv~~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~V 175 (177)
T PRK14156 130 SFDHNLHMAVQTLPADDEHPADSIAQVFQKGYKLHERLLRPAMVVV 175 (177)
T ss_pred CCChhHhhcceeecCCCCCCcCEEEEEeeCCcEeCCEEeecceeEe
Confidence 7999999988643222 22345677788999999999997 34443
No 140
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.38 E-value=7.3e+02 Score=24.56 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=23.8
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
+..++.+.+..++.....+.+++.+++.+-.++..++.+|....+
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444445555555555555555555555554443
No 141
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.14 E-value=2.7e+02 Score=22.08 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 040591 221 VSNRLQEEIDAKDSQVAALRKQLGEIH 247 (514)
Q Consensus 221 ~~~kLe~e~~~KDsEi~~Lr~~L~el~ 247 (514)
.+..|+.+...--.++..|+.++..|.
T Consensus 34 ~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 34 KVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333334444444444443
No 142
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.11 E-value=1.6e+02 Score=27.20 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=24.4
Q ss_pred HHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Q 040591 209 QENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 209 qEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~ 255 (514)
++......++.....+|.+++..-...+.+|+.+++++++.....+.
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~ 94 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEE 94 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444445555555555555666666666666555544443
No 143
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=23.06 E-value=2.1e+02 Score=26.22 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=11.9
Q ss_pred ccCHHHHHHHHHHHHHHHH
Q 040591 268 LLTVRVFDSLLHDVCRAAH 286 (514)
Q Consensus 268 ~lsp~~F~~~l~~A~~Svr 286 (514)
...+..|+.-+...|+--|
T Consensus 123 ~~d~~~Fl~~f~~~R~~yH 141 (150)
T PF07200_consen 123 EIDVDDFLKQFKEKRKLYH 141 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4556777777776665444
No 144
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=22.93 E-value=4.4e+02 Score=21.87 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=39.6
Q ss_pred HHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 040591 168 LVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIH 247 (514)
Q Consensus 168 vVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~ 247 (514)
.-.+|..|-..+..|.. .....+ ...-.+.+...+.-+..++..+..++.++..-+.++..++..|.+..
T Consensus 17 ~~~~l~~L~~~~~~~~~---~~~~~~-------~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~ 86 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQE---QLSESQ-------QGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEAR 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHH---T------------SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHhhcc-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777754 222211 01122334444444445555556666666666666666666666665
Q ss_pred hhccccc
Q 040591 248 KCNSKLS 254 (514)
Q Consensus 248 ~~n~~Le 254 (514)
...+.++
T Consensus 87 ~~~k~~e 93 (123)
T PF02050_consen 87 RERKKLE 93 (123)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 145
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.87 E-value=8.5e+02 Score=25.26 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhcC
Q 040591 127 LANTLISSIFATFSSFEASYLQLQTAH 153 (514)
Q Consensus 127 ~~eali~~lFa~VSslKaAY~qLQ~Ah 153 (514)
.+++.|...|..---=+.+|++ |.++
T Consensus 30 ~~D~f~q~~r~~~~nS~~efar-~lS~ 55 (246)
T KOG4657|consen 30 KIDSFIQSPRRRSMNSLVEFAR-ALSQ 55 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4677777777766666667776 5554
No 146
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=22.70 E-value=5.3e+02 Score=26.65 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCcccccccccch-hh-hhHHHHhhhhhhhHHHHHHHHHHHHhhhhHH
Q 040591 158 EENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGS-CL-EHRVQENQSKLRTLEIVSNRLQEEIDAKDSQ 235 (514)
Q Consensus 158 pekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s-~l-~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsE 235 (514)
.++|.+.-+.+-.||+..-++-.+|...-.+... +|... .+ ...+.|.=--+|-||+..+.|.+++..=..+
T Consensus 4 ~~a~~~t~~~i~~eL~~~~~l~~~yta~l~~~~~------~~~~~~~~~~~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~ 77 (281)
T PF12018_consen 4 QEAIPATTEHIDTELEEAQELCYRYTAVLEKQSQ------SPQMESELPPELLKEELYNRRQYEIFLRILLSDLITCAQR 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999998764333321 11111 11 1224555556778999999999999999888
Q ss_pred HHHHHHHHHHHHh
Q 040591 236 VAALRKQLGEIHK 248 (514)
Q Consensus 236 i~~Lr~~L~el~~ 248 (514)
|..|..+++....
T Consensus 78 V~~l~~~~~~~l~ 90 (281)
T PF12018_consen 78 VEELIKRFEAQLE 90 (281)
T ss_pred HHHHHHHHHHHHH
Confidence 8888776665544
No 147
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.64 E-value=1.1e+02 Score=31.92 Aligned_cols=100 Identities=23% Similarity=0.319 Sum_probs=54.4
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccccccc---CC--CCCCCcccCHHHHHHHH
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLSN---NL--SSSFDVLLTVRVFDSLL 278 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~~---~~--ls~~~~~lsp~~F~~~l 278 (514)
|.++|.+.++++.....-+.++++++..-..+|..|++.|.+ ++..|.+|++. +| .++.+..++..-|-..+
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~---r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~I 133 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE---RQELLKKRARAMQVNGTATSYIDVILNSKSFSDLI 133 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHH
Confidence 666677766666444444455555555555555555555443 33345555442 12 12344455555565555
Q ss_pred HHH--HHHHHHHHHHHHHHHHhcCCCHHHH
Q 040591 279 HDV--CRAAHKFTKILIDLMKKAGWDLDLA 306 (514)
Q Consensus 279 ~~A--~~Svr~FaK~Li~~Mr~agwdl~~a 306 (514)
.++ ...|-++=|-++...+.-.-+|...
T Consensus 134 sRvtAi~~iv~aDk~ile~qk~dk~~Le~k 163 (265)
T COG3883 134 SRVTAISVIVDADKKILEQQKEDKKSLEEK 163 (265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 543 3466677777777766555555443
No 148
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.55 E-value=4.5e+02 Score=27.06 Aligned_cols=52 Identities=25% Similarity=0.342 Sum_probs=26.4
Q ss_pred hhhHHHHhhhhhhhHHHH---------HHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Q 040591 204 LEHRVQENQSKLRTLEIV---------SNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~---------~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~ 255 (514)
+..+|++.+.+++..|-. .+.|+.++..-..++..|..+|.++.....+|++
T Consensus 64 ~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 64 LESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666555422 2444444444444455555555555544444444
No 149
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=22.54 E-value=5.6e+02 Score=27.49 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=48.5
Q ss_pred HhhhhhhhHHHHHHHHHHHHhhhhHHHH----------------------HHHHHHHHHHhhccccccccccCC---CCC
Q 040591 210 ENQSKLRTLEIVSNRLQEEIDAKDSQVA----------------------ALRKQLGEIHKCNSKLSGKLSNNL---SSS 264 (514)
Q Consensus 210 Eqq~~l~tyE~~~~kLe~e~~~KDsEi~----------------------~Lr~~L~el~~~n~~Le~rl~~~~---ls~ 264 (514)
||...+-..-..+.+|+.+...+..+.. .|.++++.+...++.|..+|.+.. .++
T Consensus 132 EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~ 211 (310)
T PF09755_consen 132 EQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSP 211 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Confidence 3444444444555666655554444333 455678888888888888888643 122
Q ss_pred CC------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040591 265 FD------VLLTVRVFDSLLHDVCRAAHKFTKILIDLMKKAGWD 302 (514)
Q Consensus 265 ~~------~~lsp~~F~~~l~~A~~Svr~FaK~Li~~Mr~agwd 302 (514)
.| ..-+|+.+..-+...+. =+.-|..+|..+.-.
T Consensus 212 ~d~~~~~~~~Dt~e~~~shI~~Lr~----EV~RLR~qL~~sq~e 251 (310)
T PF09755_consen 212 RDTVNVSEENDTAERLSSHIRSLRQ----EVSRLRQQLAASQQE 251 (310)
T ss_pred chHHhhcccCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 21 13456665555444433 233455666555444
No 150
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.76 E-value=9.3e+02 Score=30.44 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhhcCCCCChhhHHHHHHHHH--HHHHhhHHhHHHHHhhcCCCCCcccccccccch--h
Q 040591 128 ANTLISSIFATFSSFEASYLQLQTAHVPFVEENIKAADRALV--SHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGS--C 203 (514)
Q Consensus 128 ~eali~~lFa~VSslKaAY~qLQ~Ah~PyDpekI~aAD~avV--sEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s--~ 203 (514)
++....++=..-.++++.-..+|..-.||..+.+++.-++=| |||+-|......-.+ .... ...+ .
T Consensus 463 l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~---~~e~-------lk~~L~~ 532 (1293)
T KOG0996|consen 463 LDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLK---KVEE-------LKGKLLA 532 (1293)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHH
Confidence 466777777888999999999999999999999999999888 455544443333222 1110 1111 1
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSK 252 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~ 252 (514)
+...++|.+-.+..++..+..++.+++.+..++..|+++...+.+...+
T Consensus 533 ~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~ 581 (1293)
T KOG0996|consen 533 SSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNK 581 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3345556666665555555666666666666666666666655544443
No 151
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.68 E-value=1.5e+02 Score=29.66 Aligned_cols=11 Identities=0% Similarity=0.187 Sum_probs=5.4
Q ss_pred hhHHhHHHHHh
Q 040591 174 RLSDFKQFYKD 184 (514)
Q Consensus 174 ~Ls~LK~~y~~ 184 (514)
.|.+|+....+
T Consensus 101 el~~l~~~l~~ 111 (206)
T PRK10884 101 QVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHH
Confidence 45555544433
No 152
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.36 E-value=7e+02 Score=23.55 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHh
Q 040591 128 ANTLISSIFATFSSFEASYLQLQ 150 (514)
Q Consensus 128 ~eali~~lFa~VSslKaAY~qLQ 150 (514)
++..+..+..-+..++..|-.++
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 44445555555555555554444
No 153
>PHA03155 hypothetical protein; Provisional
Probab=21.26 E-value=2.6e+02 Score=25.88 Aligned_cols=48 Identities=27% Similarity=0.312 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCCCCCcccCHHHHHHHHHHHH
Q 040591 234 SQVAALRKQLGEIHKCNSKLSGKLSNNLSSSFDVLLTVRVFDSLLHDVC 282 (514)
Q Consensus 234 sEi~~Lr~~L~el~~~n~~Le~rl~~~~ls~~~~~lsp~~F~~~l~~A~ 282 (514)
.-+++|-.+|..|+..|+.|.++|.+++. ..|..+||..=...+..+.
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~-p~d~~LT~~qKea~I~s~v 55 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQHGN-PEDELLTPAQKDAIINSLV 55 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCC-CCccccCHHHHHHHHHHHH
Confidence 34556667788888888888888887663 3455788877666665543
No 154
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=21.26 E-value=1.2e+02 Score=29.43 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHhhccccccccc
Q 040591 217 TLEIVSNRLQEEIDAKDSQVA-----ALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 217 tyE~~~~kLe~e~~~KDsEi~-----~Lr~~L~el~~~n~~Le~rl~ 258 (514)
..+.-+..|++.+..|+.+|. .-|.+|+|+.....+||.|+.
T Consensus 96 ~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~ 142 (175)
T PRK13182 96 TITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLK 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345566888888888887443 234455555555555554443
No 155
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=21.23 E-value=4.5e+02 Score=23.29 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=12.5
Q ss_pred HHHHHHHhhHHhHHHHHh
Q 040591 167 ALVSHLQRLSDFKQFYKD 184 (514)
Q Consensus 167 avVsEL~~Ls~LK~~y~~ 184 (514)
..-..|..|.+.+.-|..
T Consensus 31 ~~~~~l~~l~~~~~~~~~ 48 (141)
T TIGR02473 31 RLETQLQQLIKYREEYEQ 48 (141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777777777765
No 156
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=21.21 E-value=1.9e+02 Score=33.85 Aligned_cols=60 Identities=28% Similarity=0.381 Sum_probs=38.9
Q ss_pred ccchhhhhHHHHhhhhhhhHHHHH-----------HHHHHHHhhh--------h--HHHHHHHHHHHHHHhhcccccccc
Q 040591 199 AIGSCLEHRVQENQSKLRTLEIVS-----------NRLQEEIDAK--------D--SQVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 199 ~~~s~l~aeiqEqq~~l~tyE~~~-----------~kLe~e~~~K--------D--sEi~~Lr~~L~el~~~n~~Le~rl 257 (514)
.|.+.|..++.+|..+++.+|..+ +-||+++-.+ | +||++||-++..+++..+.-|+++
T Consensus 125 LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~ 204 (861)
T KOG1899|consen 125 LQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKL 204 (861)
T ss_pred ehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 567777788888888888887655 2234433322 2 277788877777777666666655
Q ss_pred c
Q 040591 258 S 258 (514)
Q Consensus 258 ~ 258 (514)
.
T Consensus 205 R 205 (861)
T KOG1899|consen 205 R 205 (861)
T ss_pred H
Confidence 4
No 157
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.99 E-value=5.9e+02 Score=30.33 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHhh
Q 040591 125 TQLANTLISSIFATFSSFEASYLQLQT 151 (514)
Q Consensus 125 ~~~~eali~~lFa~VSslKaAY~qLQ~ 151 (514)
...++.-+..+=..+..++....+|+.
T Consensus 760 l~~l~~~i~~l~~~i~~l~~el~~l~~ 786 (1164)
T TIGR02169 760 LKELEARIEELEEDLHKLEEALNDLEA 786 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666665554
No 158
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.95 E-value=1.2e+02 Score=30.36 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhcccccccc
Q 040591 223 NRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 223 ~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl 257 (514)
+..+.++-.|++||..||..|.++...+...+.++
T Consensus 20 ke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~ 54 (202)
T PF06818_consen 20 KESQAEVNQKDSEIVSLRAQLRELRAELRNKESQI 54 (202)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 66778888888888888888887777666655543
No 159
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.80 E-value=1.6e+02 Score=25.98 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=25.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhcccccccccc
Q 040591 226 QEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLSN 259 (514)
Q Consensus 226 e~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~~ 259 (514)
......++.+|..|+.+|..+......++.++..
T Consensus 73 ~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 73 KKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556668888888888888888888887654
No 160
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=20.76 E-value=91 Score=32.85 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=32.4
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
+..+++-....+-..|.-+...+.++..-..|+.++|.+|+..+..+......|.
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~ 140 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLN 140 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc
Confidence 4445555445555556666666666666666677777776666665554443333
No 161
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.52 E-value=1.1e+03 Score=25.89 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhcCC--CHHHHhhhccccccc-cccCcchhhhHHHHHHHHhcCCCCCCcCC
Q 040591 284 AAHKFTKILIDLMKKAGW--DLDLAANSVYRDINY-AKKGHNQYALLSYVCLGMFRGFDLEGFGL 345 (514)
Q Consensus 284 Svr~FaK~Li~~Mr~agw--dl~~aa~si~~~v~y-~K~~h~kyalEAyv~r~MF~gFe~~~F~l 345 (514)
+.+.-.+.|++++|..-. .-..+|+++...-.+ +..+-.-|++| ||.+|++-.+++-++
T Consensus 238 ~s~~v~~ql~selkkivf~~enie~A~slTasry~~~e~svhnysLd---cRrLfDsLreEnlgm 299 (401)
T PF06785_consen 238 SSQDVPKQLVSELKKIVFKVENIEAASSLTASRYINSESSVHNYSLD---CRRLFDSLREENLGM 299 (401)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHhhhccCCccccchHH---HHHHHhhhcccccce
Confidence 334444556666664421 122334444332222 22233467666 999999998887654
No 162
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=20.23 E-value=1.1e+02 Score=25.47 Aligned_cols=66 Identities=9% Similarity=-0.099 Sum_probs=36.8
Q ss_pred hhhheeeeCCCcceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEEEEEEecc
Q 040591 443 LHKLGFSFDPQVDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQSQVYLCG 509 (514)
Q Consensus 443 LH~LAfSf~P~a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVikcrVYLs~ 509 (514)
|.|+|..|.|++.|.=-+.|...... ++.+.....+.......-+.+.|-=.=.+..+.|+|--..
T Consensus 4 LtC~a~g~~P~~~ItW~k~g~~l~~~-~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 4 LRCTSSGSKPAANIKWRKGDQELEGA-PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEecCccCCCEeEEEECCEECCCc-ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 67999999999998877788766553 2333221110011112222223332335688889885443
No 163
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=20.21 E-value=7.8e+02 Score=23.68 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhcccccccc
Q 040591 235 QVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 235 Ei~~Lr~~L~el~~~n~~Le~rl 257 (514)
+...|..+++.++..|+.|+.++
T Consensus 90 e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 90 ERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555666666665555443
No 164
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=20.21 E-value=2.4e+02 Score=26.15 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccccCCC---CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040591 232 KDSQVAALRKQLGEIHKCNSKLSGKLSNNLS---SSFDVLLTVRVFDSLLHDVCRAAHKFTKILIDLMK 297 (514)
Q Consensus 232 KDsEi~~Lr~~L~el~~~n~~Le~rl~~~~l---s~~~~~lsp~~F~~~l~~A~~Svr~FaK~Li~~Mr 297 (514)
||.-+++|-.+|..|+..|+.|.+++.+++. +..+..+||..=...+..+ +..|++.-...++
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~---~~~Lss~A~~KIe 66 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSA---VSKLSSQASKKIE 66 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3455667778888888888888888887653 2344478887666666554 4455555444443
Done!