Query 040591
Match_columns 514
No_of_seqs 119 out of 137
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 15:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxa_A CGMP-dependent protein 92.5 0.14 4.7E-06 41.5 4.5 47 204-250 9-55 (67)
2 3nmd_A CGMP dependent protein 90.5 0.43 1.5E-05 39.1 5.5 34 215-248 35-68 (72)
3 1t6f_A Geminin; coiled-coil, c 82.7 2.1 7.2E-05 30.7 4.7 25 223-247 10-34 (37)
4 3efg_A Protein SLYX homolog; x 82.3 3.3 0.00011 34.0 6.6 56 200-255 8-63 (78)
5 1dkg_A Nucleotide exchange fac 72.6 2.6 9E-05 40.0 3.8 55 454-509 139-194 (197)
6 3a6m_A Protein GRPE, HSP-70 co 71.5 5 0.00017 37.6 5.3 46 461-509 122-168 (177)
7 3oja_B Anopheles plasmodium-re 66.8 76 0.0026 33.3 13.9 53 208-260 532-584 (597)
8 2v4h_A NF-kappa-B essential mo 65.8 46 0.0016 29.2 9.8 45 207-254 63-110 (110)
9 3mq9_A Bone marrow stromal ant 64.8 8.1 0.00028 39.8 5.9 37 204-240 434-470 (471)
10 4ani_A Protein GRPE; chaperone 64.0 2.9 9.8E-05 40.4 2.1 47 461-507 164-211 (213)
11 3nmd_A CGMP dependent protein 63.4 8.8 0.0003 31.4 4.5 40 218-257 24-63 (72)
12 3a7p_A Autophagy protein 16; c 59.2 11 0.00038 34.8 5.0 105 150-258 16-120 (152)
13 3a7o_A Autophagy protein 16; c 56.4 13 0.00044 30.4 4.3 23 221-243 19-41 (75)
14 3hnw_A Uncharacterized protein 54.0 39 0.0013 30.3 7.6 33 223-255 92-124 (138)
15 3hnw_A Uncharacterized protein 52.2 17 0.00057 32.7 4.9 20 235-254 111-130 (138)
16 3a7o_A Autophagy protein 16; c 50.6 24 0.00081 28.9 5.0 58 201-258 13-70 (75)
17 1m1j_C Fibrinogen gamma chain; 49.9 49 0.0017 34.7 8.7 47 204-250 89-135 (409)
18 1nkp_B MAX protein, MYC proto- 47.6 93 0.0032 24.9 8.3 34 221-254 48-81 (83)
19 3m91_A Proteasome-associated A 47.4 49 0.0017 25.2 6.1 43 205-247 8-50 (51)
20 1lwu_C Fibrinogen gamma chain; 46.1 34 0.0012 34.8 6.7 49 203-251 9-57 (323)
21 4emc_A Monopolin complex subun 44.9 16 0.00055 34.8 3.7 28 223-250 30-57 (190)
22 4fla_A Regulation of nuclear P 43.7 25 0.00086 32.1 4.8 57 201-257 88-144 (152)
23 3a7p_A Autophagy protein 16; c 43.2 79 0.0027 29.1 7.9 36 221-256 97-132 (152)
24 1wt6_A Myotonin-protein kinase 42.5 39 0.0013 28.2 5.2 25 213-237 45-69 (81)
25 3e21_A HFAF1, FAS-associated f 39.9 16 0.00054 27.2 2.2 20 293-312 25-44 (45)
26 3oja_B Anopheles plasmodium-re 39.6 81 0.0028 33.1 8.6 48 203-250 506-553 (597)
27 3s4r_A Vimentin; alpha-helix, 38.7 44 0.0015 28.0 5.1 23 233-255 55-77 (93)
28 1wlq_A Geminin; coiled-coil; 2 38.1 45 0.0015 27.9 4.9 30 218-247 34-65 (83)
29 3m9b_A Proteasome-associated A 37.0 29 0.00099 34.4 4.3 44 205-248 53-96 (251)
30 3qh9_A Liprin-beta-2; coiled-c 36.0 1.3E+02 0.0046 25.0 7.4 23 221-243 55-77 (81)
31 3vmx_A Voltage-gated hydrogen 35.7 87 0.003 23.7 5.7 20 225-244 23-42 (48)
32 3ghg_C Fibrinogen gamma chain; 35.2 93 0.0032 32.8 8.0 47 204-250 89-135 (411)
33 3d5a_X RF1, peptide chain rele 35.0 2.8E+02 0.0096 28.6 11.4 45 136-184 2-50 (354)
34 3hho_A CO-chaperone protein HS 35.0 2.2E+02 0.0074 25.9 9.7 17 139-155 20-36 (174)
35 1i84_S Smooth muscle myosin he 34.7 83 0.0028 36.8 8.3 9 235-243 956-964 (1184)
36 3ajw_A Flagellar FLIJ protein; 34.2 2.2E+02 0.0075 24.3 9.8 79 167-254 37-115 (150)
37 2fxo_A Myosin heavy chain, car 33.4 91 0.0031 27.2 6.6 47 203-249 80-126 (129)
38 2no2_A HIP-I, huntingtin-inter 33.2 53 0.0018 28.3 4.9 37 221-257 55-91 (107)
39 3swk_A Vimentin; cytoskeleton, 32.2 34 0.0012 28.3 3.3 56 200-258 15-73 (86)
40 3vkg_A Dynein heavy chain, cyt 31.5 96 0.0033 40.6 8.6 74 174-256 1991-2064(3245)
41 2oa5_A Hypothetical protein BQ 30.5 97 0.0033 27.2 6.0 59 235-296 9-68 (110)
42 2w6a_A ARF GTPase-activating p 30.4 86 0.0029 24.8 5.1 48 206-253 13-60 (63)
43 1fzc_C Fibrin; blood coagulati 30.2 52 0.0018 33.4 5.0 47 206-252 4-50 (319)
44 3ol1_A Vimentin; structural ge 30.0 53 0.0018 28.5 4.4 35 223-257 55-92 (119)
45 1zxa_A CGMP-dependent protein 29.0 15 0.00051 29.6 0.6 38 221-258 12-49 (67)
46 3na7_A HP0958; flagellar bioge 28.8 1.2E+02 0.0039 29.2 7.0 70 169-257 13-83 (256)
47 2yy0_A C-MYC-binding protein; 28.3 73 0.0025 24.2 4.3 26 224-249 23-48 (53)
48 4dnd_A Syntaxin-10, SYN10; str 27.8 1.8E+02 0.0061 25.7 7.5 38 142-184 15-52 (130)
49 1uii_A Geminin; human, DNA rep 27.1 1.1E+02 0.0036 25.7 5.4 31 218-248 42-74 (83)
50 2k48_A Nucleoprotein; viral pr 26.1 1.5E+02 0.005 25.9 6.3 48 204-251 33-99 (107)
51 3mq7_A Bone marrow stromal ant 25.2 1.1E+02 0.0037 27.2 5.4 38 212-249 70-107 (121)
52 4ghu_A TNF receptor-associated 25.1 81 0.0028 29.2 5.0 31 218-248 5-35 (198)
53 3jsv_C NF-kappa-B essential mo 25.1 3.2E+02 0.011 23.3 8.5 76 160-254 10-88 (94)
54 4etp_A Kinesin-like protein KA 24.7 52 0.0018 34.1 3.9 9 238-246 49-57 (403)
55 2wvr_A Geminin; DNA replicatio 23.8 1.1E+02 0.0036 29.6 5.5 31 218-248 111-143 (209)
56 1m1j_B Fibrinogen beta chain; 23.4 5.3E+02 0.018 27.5 11.4 16 136-151 120-135 (464)
57 1ca9_A TRAF2, protein (TNF rec 23.0 70 0.0024 29.0 4.1 34 215-248 5-38 (192)
58 1gd2_E Transcription factor PA 22.7 1.2E+02 0.0041 24.4 4.8 30 223-252 39-68 (70)
59 1t2k_D Cyclic-AMP-dependent tr 22.6 1.6E+02 0.0056 22.3 5.5 24 223-246 32-55 (61)
60 3iv1_A Tumor susceptibility ge 22.4 2E+02 0.007 23.7 6.2 32 219-250 45-76 (78)
61 3u1c_A Tropomyosin alpha-1 cha 22.2 1.1E+02 0.0038 25.7 4.9 24 204-227 42-65 (101)
62 2v66_B Nuclear distribution pr 21.9 2.2E+02 0.0075 24.8 6.7 52 204-255 15-70 (111)
63 2v71_A Nuclear distribution pr 21.6 1.9E+02 0.0064 27.4 6.7 34 222-255 90-123 (189)
64 1m1j_B Fibrinogen beta chain; 21.4 2.7E+02 0.0093 29.7 8.6 20 235-254 169-188 (464)
65 3oja_A Leucine-rich immune mol 21.1 3.1E+02 0.011 28.0 8.9 79 170-255 378-456 (487)
66 1ykh_A RNA polymerase II media 21.0 1.3E+02 0.0043 26.3 5.0 32 218-249 74-105 (108)
67 2zqm_A Prefoldin beta subunit 21.0 1.7E+02 0.0057 24.2 5.7 41 208-248 72-112 (117)
68 1gd2_E Transcription factor PA 20.8 1E+02 0.0036 24.7 4.1 39 206-244 29-67 (70)
69 2oqq_A Transcription factor HY 20.8 1.1E+02 0.0039 22.5 3.9 33 221-253 4-36 (42)
70 2e7s_A RAB guanine nucleotide 20.5 1.3E+02 0.0043 27.2 5.0 78 204-283 13-93 (135)
71 3u59_A Tropomyosin beta chain; 20.4 1.3E+02 0.0044 25.2 4.9 21 205-225 43-63 (101)
72 2ocy_A RAB guanine nucleotide 20.2 4.4E+02 0.015 24.2 8.7 63 223-287 47-112 (154)
No 1
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=92.50 E-value=0.14 Score=41.47 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=33.9
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCN 250 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n 250 (514)
+....++.+..++.-+..+..||.+++.||.+|.+|+.+|+...+-.
T Consensus 9 ~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 9 TSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55667788888888999999999999999999999999999876533
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=90.47 E-value=0.43 Score=39.06 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 215 LRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 215 l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
|+.-+..++.|++++..||++|..|+.+|+...+
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556677899999999999999999999987643
No 3
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=82.69 E-value=2.1 Score=30.67 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=21.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Q 040591 223 NRLQEEIDAKDSQVAALRKQLGEIH 247 (514)
Q Consensus 223 ~kLe~e~~~KDsEi~~Lr~~L~el~ 247 (514)
+||..++..||.||.+||++=.++.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7889999999999999998766664
No 4
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=82.26 E-value=3.3 Score=34.02 Aligned_cols=56 Identities=18% Similarity=0.116 Sum_probs=46.8
Q ss_pred cchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Q 040591 200 IGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 200 ~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~ 255 (514)
....+..+|.+++.+++--|-++..|...+-....+|..|+.+|..+..+...++.
T Consensus 8 ~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 8 RDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34458999999999999999999999999999999999999999999887776553
No 5
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=72.64 E-value=2.6 Score=40.02 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=39.4
Q ss_pred cceEEecCCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEecc
Q 040591 454 VDIFQVERGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLCG 509 (514)
Q Consensus 454 a~If~V~rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs~ 509 (514)
+..+.. .|..|||.+.|-|..-..++...-.|.-.+-+|++++++||+ ++|-++.
T Consensus 139 v~~i~~-~G~~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRvLRpA~V~V~~ 194 (197)
T 1dkg_A 139 VEVIAE-TNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAK 194 (197)
T ss_dssp EEEECC-CSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEETTEEEECEEEEEEE
T ss_pred CEEeCC-CCCCCCHHHhheeeeecCCCCCcCeEEEEeeCCeeeCCEEecceEEEecC
Confidence 344443 599999999998864322233345777799999999999998 5776654
No 6
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=71.47 E-value=5 Score=37.59 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=36.2
Q ss_pred CCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEecc
Q 040591 461 RGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYLCG 509 (514)
Q Consensus 461 rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYLs~ 509 (514)
.|..|||.+.|-|..... ..-.|.-.+-+|++++++||+ ++|-++.
T Consensus 122 ~Ge~FDP~~HeAv~~~~~---~~gtVv~v~qkGY~l~dRvLRpA~V~V~~ 168 (177)
T 3a6m_A 122 EGEAFDPRYHEAVGLLPG---EPGKVAKVFQRGFRMGEALVRPARVAVGE 168 (177)
T ss_dssp TTSBCCTTTEEEEEEEES---STTBEEEEEECCEEETTEEEECEEEEEEE
T ss_pred CCCCCCHHHhhhhhcccC---CcCeEEEEeecCeeeCCEEecCeEEEEeC
Confidence 599999999998853211 345788889999999999998 5777664
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.82 E-value=76 Score=33.26 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=33.6
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccccC
Q 040591 208 VQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLSNN 260 (514)
Q Consensus 208 iqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~~~ 260 (514)
+++++..++..+.-..+|+.+++.+...+.+|++++..+..+.+.|++++..+
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333333333445566777777777777788888888877788887776643
No 8
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.81 E-value=46 Score=29.20 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=33.8
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHhhccccc
Q 040591 207 RVQENQSKLRTLEIVSNRLQEEIDAKDS---QVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 207 eiqEqq~~l~tyE~~~~kLe~e~~~KDs---Ei~~Lr~~L~el~~~n~~Le 254 (514)
.|+-++..+..|. ...++|-.+|.. |+.+|..+|..+++.|..|+
T Consensus 63 ~I~vLkaQv~IY~---~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 63 TVPVLKAQADIYK---ADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHH---HHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 4555666665555 777777777764 89999999999999988763
No 9
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=64.81 E-value=8.1 Score=39.79 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=19.6
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHH
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALR 240 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr 240 (514)
|.++.-.++++++..|.-+.+|+++++.-..||.+||
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444555555555555555555555555555544
No 10
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=64.05 E-value=2.9 Score=40.45 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=35.3
Q ss_pred CCCccccccceeccccccCCCCCCeEEEEecCCceeCCeEEE-EEEEe
Q 040591 461 RGVDFSMVYMEDVTRSKLVGKTRAKVGFTVVPGFKVGRTVIQ-SQVYL 507 (514)
Q Consensus 461 rG~~F~~~YMEsV~~~~~~~~~~~~VgftV~PGF~vg~tVik-crVYL 507 (514)
.|..|||.+.|-|..-..++...-.|.-.+-+|++++++||+ ++|-+
T Consensus 164 ~Ge~FDP~~HeAv~~v~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~V 211 (213)
T 4ani_A 164 VGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKLKDRVLRPAMVKV 211 (213)
T ss_dssp SSSCCCTTTEEEEEEECCSSSCSSSEEEEEECCCEETTSCCSCEEEEE
T ss_pred CCCCCCHHHceeeeeecCCCCCCCcEEEEEeCCeEECCEEeeceEEEe
Confidence 499999999999864322233345788899999999999986 55544
No 11
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.42 E-value=8.8 Score=31.39 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccccc
Q 040591 218 LEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 218 yE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl 257 (514)
++.++++-..++++||..|.+|...|++.......|-..|
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335577788889999999988888888877776665443
No 12
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=59.20 E-value=11 Score=34.75 Aligned_cols=105 Identities=20% Similarity=0.165 Sum_probs=45.3
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHH
Q 040591 150 QTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEI 229 (514)
Q Consensus 150 Q~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~ 229 (514)
|.-+-||- -..|..++..|+.=..+-..|...-+.|...-.+..-.........|..+++-++..+.-++.|+.++
T Consensus 16 ~~~~~~~~----~~md~~l~~rL~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 16 EERSNPQT----DSMDDLLIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCcc----hhHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556664 23566677766644443333332212222100000000112355677778888888888888899999
Q ss_pred hhhhHHHHHHHHHHHHHHhhccccccccc
Q 040591 230 DAKDSQVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 230 ~~KDsEi~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
+.|..-+..|+.++..++-.++.+|.++.
T Consensus 92 ~eK~K~~e~l~DEl~aLqlq~n~lE~kl~ 120 (152)
T 3a7p_A 92 ALKNKNTERLNAALISGTIENNVLQQKLS 120 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888877777776654
No 13
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=56.40 E-value=13 Score=30.38 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Q 040591 221 VSNRLQEEIDAKDSQVAALRKQL 243 (514)
Q Consensus 221 ~~~kLe~e~~~KDsEi~~Lr~~L 243 (514)
++..|+++++.||.||.+|++-+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i 41 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVI 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666665543
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.95 E-value=39 Score=30.31 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Q 040591 223 NRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 223 ~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~ 255 (514)
..|+.++-..+.++..+++++.++.+.+..|++
T Consensus 92 ~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 92 YDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.16 E-value=17 Score=32.74 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 040591 235 QVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 235 Ei~~Lr~~L~el~~~n~~Le 254 (514)
++..|++++.+++..+.+||
T Consensus 111 e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 16
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=50.57 E-value=24 Score=28.85 Aligned_cols=58 Identities=28% Similarity=0.229 Sum_probs=49.2
Q ss_pred chhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccc
Q 040591 201 GSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 201 ~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
++.+...+.-+|+-|+.-|--+.+|+..+..|--...+|..+|=.++-.|+-|..||.
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 3456677778888888888889999999998888888999999999999998888775
No 17
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=49.90 E-value=49 Score=34.73 Aligned_cols=47 Identities=6% Similarity=0.175 Sum_probs=37.2
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCN 250 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n 250 (514)
|..++.+.+..+...+..++.|+..+..-+..|..|+.++.++....
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 66677777777777888888888888888888888888888776543
No 18
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=47.58 E-value=93 Score=24.93 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Q 040591 221 VSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 221 ~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le 254 (514)
+++.|+.+.+.-..++..|+.+...+......|+
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888888888888888888888887776654
No 19
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=47.37 E-value=49 Score=25.21 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=34.4
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 040591 205 EHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIH 247 (514)
Q Consensus 205 ~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~ 247 (514)
+...++.|..+...-.-=.+|...++.-..+|..|+++|+.+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677777766666678999999999999999999998763
No 20
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=46.10 E-value=34 Score=34.83 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=39.7
Q ss_pred hhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Q 040591 203 CLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNS 251 (514)
Q Consensus 203 ~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~ 251 (514)
.|..+|..++.++...+..++.|+..+..-++.|.+|+.+|.+++....
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3777888888888888888899999988888888888888888776443
No 21
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=44.86 E-value=16 Score=34.79 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 040591 223 NRLQEEIDAKDSQVAALRKQLGEIHKCN 250 (514)
Q Consensus 223 ~kLe~e~~~KDsEi~~Lr~~L~el~~~n 250 (514)
..|..+++.|+.||..|+++|+.++...
T Consensus 30 ~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 30 FVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566799999999999999999887644
No 22
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=43.73 E-value=25 Score=32.11 Aligned_cols=57 Identities=11% Similarity=0.292 Sum_probs=38.9
Q ss_pred chhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccccc
Q 040591 201 GSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 201 ~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl 257 (514)
+.+|++|+.+.+.+++..+....-.+.++........+-|.++..+..-.++|...+
T Consensus 88 n~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 88 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335778888877777777766666666666666666677777777766666655544
No 23
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=43.15 E-value=79 Score=29.13 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccc
Q 040591 221 VSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGK 256 (514)
Q Consensus 221 ~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~r 256 (514)
.+..|+.|+.+-..+...+..++..++..|..|=.|
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777766655433
No 24
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.49 E-value=39 Score=28.16 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=11.3
Q ss_pred hhhhhHHHHHHHHHHHHhhhhHHHH
Q 040591 213 SKLRTLEIVSNRLQEEIDAKDSQVA 237 (514)
Q Consensus 213 ~~l~tyE~~~~kLe~e~~~KDsEi~ 237 (514)
++|+.+|...+.|+.+++.++.++.
T Consensus 45 skL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555444444443333
No 25
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=39.90 E-value=16 Score=27.15 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=15.1
Q ss_pred HHHHHhcCCCHHHHhhhccc
Q 040591 293 IDLMKKAGWDLDLAANSVYR 312 (514)
Q Consensus 293 i~~Mr~agwdl~~aa~si~~ 312 (514)
...+++++|||..|++..-|
T Consensus 25 ~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 25 ITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHHTTTCHHHHHTTC--
T ss_pred HHHHHHcCCcHHHHHHHHcC
Confidence 35678999999999987544
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.61 E-value=81 Score=33.07 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=28.4
Q ss_pred hhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 040591 203 CLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCN 250 (514)
Q Consensus 203 ~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n 250 (514)
.+..+++..+.+.+..+...+++++++.++..+...|+++..++++..
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHH
Confidence 356666666666666666666666666666666655555555555433
No 27
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=38.72 E-value=44 Score=28.04 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHhhcccccc
Q 040591 233 DSQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 233 DsEi~~Lr~~L~el~~~n~~Le~ 255 (514)
+.+|..||.+|+++...+..++-
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~ 77 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEV 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555555443
No 28
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=38.08 E-value=45 Score=27.95 Aligned_cols=30 Identities=37% Similarity=0.619 Sum_probs=24.8
Q ss_pred HHHHH--HHHHHHHhhhhHHHHHHHHHHHHHH
Q 040591 218 LEIVS--NRLQEEIDAKDSQVAALRKQLGEIH 247 (514)
Q Consensus 218 yE~~~--~kLe~e~~~KDsEi~~Lr~~L~el~ 247 (514)
|+++- ++|..++..||.||..|+++..++.
T Consensus 34 ~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 34 YEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56555 8899999999999999998777664
No 29
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.01 E-value=29 Score=34.38 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=35.0
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 205 EHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 205 ~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
+..+++.+..+...++..++|.++++.-..|+..||++|+.+.+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566777777777777788999999999999999999988753
No 30
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=35.95 E-value=1.3e+02 Score=24.97 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Q 040591 221 VSNRLQEEIDAKDSQVAALRKQL 243 (514)
Q Consensus 221 ~~~kLe~e~~~KDsEi~~Lr~~L 243 (514)
-+..|+.++..||+||.+|+.+|
T Consensus 55 El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 55 EVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 34567777788888887777665
No 31
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=35.74 E-value=87 Score=23.73 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=11.4
Q ss_pred HHHHHhhhhHHHHHHHHHHH
Q 040591 225 LQEEIDAKDSQVAALRKQLG 244 (514)
Q Consensus 225 Le~e~~~KDsEi~~Lr~~L~ 244 (514)
|+..-..++-||.+|+.=|.
T Consensus 23 Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 23 LEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHH
Confidence 34444455566777776554
No 32
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=35.18 E-value=93 Score=32.79 Aligned_cols=47 Identities=11% Similarity=0.237 Sum_probs=33.3
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCN 250 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n 250 (514)
|..|+...+.++...+..+..|+..+...++.|..|+.++..+...-
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555566666666677788888888888888888888776643
No 33
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=35.05 E-value=2.8e+02 Score=28.63 Aligned_cols=45 Identities=11% Similarity=0.271 Sum_probs=26.4
Q ss_pred HHhhhhhHHHHHHHhhc-CCC---CChhhHHHHHHHHHHHHHhhHHhHHHHHh
Q 040591 136 FATFSSFEASYLQLQTA-HVP---FVEENIKAADRALVSHLQRLSDFKQFYKD 184 (514)
Q Consensus 136 Fa~VSslKaAY~qLQ~A-h~P---yDpekI~aAD~avVsEL~~Ls~LK~~y~~ 184 (514)
|+.+..++.-|.+|... .-| -||++.+. +..|+..|..+-..|.+
T Consensus 2 ~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~----~~ke~~~l~~~v~~~~~ 50 (354)
T 3d5a_X 2 LDKLDRLEEEYRELEALLSDPEVLKDKGRYQS----LSRRYAEMGEVIGLIRE 50 (354)
T ss_dssp HHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCCchhhCHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34556667777777652 234 35555543 55666666666666655
No 34
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=34.99 E-value=2.2e+02 Score=25.90 Aligned_cols=17 Identities=24% Similarity=0.252 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHhhcCCC
Q 040591 139 FSSFEASYLQLQTAHVP 155 (514)
Q Consensus 139 VSslKaAY~qLQ~Ah~P 155 (514)
...||.||-+||..+||
T Consensus 20 ~~eIk~aYr~l~~~~HP 36 (174)
T 3hho_A 20 GSLLSSQFRALQKRFHP 36 (174)
T ss_dssp HHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHCc
Confidence 45699999999999998
No 35
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=34.71 E-value=83 Score=36.84 Aligned_cols=9 Identities=44% Similarity=0.560 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 040591 235 QVAALRKQL 243 (514)
Q Consensus 235 Ei~~Lr~~L 243 (514)
++..|+.++
T Consensus 956 el~~L~~el 964 (1184)
T 1i84_S 956 QMLDLEEQL 964 (1184)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333333333
No 36
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=34.21 E-value=2.2e+02 Score=24.28 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=44.9
Q ss_pred HHHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040591 167 ALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEI 246 (514)
Q Consensus 167 avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el 246 (514)
..-.+|..|...+.-|.. .....+..| .-.+.++..+.-+..++..+...+.++..-..++...+..+.+.
T Consensus 37 ~~~~~L~~L~~~~~~y~~---~~~~~~~~g------~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a 107 (150)
T 3ajw_A 37 QAEEQLKMLIDYQNEYRS---NLNTDMGNG------IASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREK 107 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH---TCC--CCSG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888877 222211100 12334555555555555566666666666666666666666666
Q ss_pred Hhhccccc
Q 040591 247 HKCNSKLS 254 (514)
Q Consensus 247 ~~~n~~Le 254 (514)
....+.+|
T Consensus 108 ~~~~k~~e 115 (150)
T 3ajw_A 108 KQRLQAWQ 115 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555554
No 37
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.35 E-value=91 Score=27.21 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=40.5
Q ss_pred hhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 040591 203 CLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKC 249 (514)
Q Consensus 203 ~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~ 249 (514)
-|...+.+.+..+...|-....|.++-+.=..++..|++.|++++..
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788888888888888888999999888888999999999988753
No 38
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=33.25 E-value=53 Score=28.30 Aligned_cols=37 Identities=14% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccccc
Q 040591 221 VSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 221 ~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl 257 (514)
.+..|+.++..|+.|+..|+..+......+..+..++
T Consensus 55 ~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 55 VLESLKQELATSQRELQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488999999999999999998888877776665543
No 39
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=32.16 E-value=34 Score=28.31 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=39.0
Q ss_pred cchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHhhccccccccc
Q 040591 200 IGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDS---QVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 200 ~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDs---Ei~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
.++++..++...|-.+.. .-.|.+.|+..|.+ ++..||+-++++.-....||.++.
T Consensus 15 e~~~l~~e~dn~~~~~ed---fk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kve 73 (86)
T 3swk_A 15 DKARVEVERDNLAEDIMR---LREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVE 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344567777765555433 34778888887766 788888888888777777776654
No 40
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=31.51 E-value=96 Score=40.63 Aligned_cols=74 Identities=9% Similarity=0.140 Sum_probs=49.7
Q ss_pred hhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Q 040591 174 RLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKL 253 (514)
Q Consensus 174 ~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~L 253 (514)
.+.+.|.-..+ +++.+ .|. .++.+++++.+..++..+...++.+++++.-+.++..|+.+++++.++...|
T Consensus 1991 ei~~~k~~~e~---dL~~A-----~Pa-~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L 2061 (3245)
T 3vkg_A 1991 EIAVQKVKAYA---DLEKA-----EPT-GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQI 2061 (3245)
T ss_dssp HHHHHHHHHHH---CC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHhhc-----CCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544 55442 354 5677888888888877777778888888888888888888888887766666
Q ss_pred ccc
Q 040591 254 SGK 256 (514)
Q Consensus 254 e~r 256 (514)
+..
T Consensus 2062 ~~e 2064 (3245)
T 3vkg_A 2062 KTE 2064 (3245)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 41
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=30.46 E-value=97 Score=27.16 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCC-CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040591 235 QVAALRKQLGEIHKCNSKLSGKLSNNLS-SSFDVLLTVRVFDSLLHDVCRAAHKFTKILIDLM 296 (514)
Q Consensus 235 Ei~~Lr~~L~el~~~n~~Le~rl~~~~l-s~~~~~lsp~~F~~~l~~A~~Svr~FaK~Li~~M 296 (514)
-.++|-.+|..|+..|+.|.+++.++|- +..+..+||..=...+..+ +..|++.-...+
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~---~~~Lss~A~~KI 68 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSS---SRALGAVAMRKI 68 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3456667888888889999999876553 3455688998777666654 444555444444
No 42
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=30.38 E-value=86 Score=24.83 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=35.8
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Q 040591 206 HRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKL 253 (514)
Q Consensus 206 aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~L 253 (514)
-|-=|.+..|.+-|+-++.|-+--..-..|+..|..+|..++..|..|
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 444566777778887777776666666668888888999998888765
No 43
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=30.16 E-value=52 Score=33.44 Aligned_cols=47 Identities=11% Similarity=0.247 Sum_probs=31.7
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Q 040591 206 HRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKCNSK 252 (514)
Q Consensus 206 aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~ 252 (514)
.||......+..++..++.|+..++..+.+|..|+.++.+++.....
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455566667777888888888888899999988888765544
No 44
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=30.05 E-value=53 Score=28.54 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=17.4
Q ss_pred HHHHHHHhhhhH---HHHHHHHHHHHHHhhcccccccc
Q 040591 223 NRLQEEIDAKDS---QVAALRKQLGEIHKCNSKLSGKL 257 (514)
Q Consensus 223 ~kLe~e~~~KDs---Ei~~Lr~~L~el~~~n~~Le~rl 257 (514)
.|.+.++..|.+ ++..||+.++++.-....||.++
T Consensus 55 ~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~i 92 (119)
T 3ol1_A 55 EKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKV 92 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 444444444433 55556666655555444454443
No 45
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.04 E-value=15 Score=29.60 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccc
Q 040591 221 VSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLS 258 (514)
Q Consensus 221 ~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~ 258 (514)
.+++|.+.++.||..|.+|...|++-...+..|...|.
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888999999999888888777777766665544
No 46
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.76 E-value=1.2e+02 Score=29.21 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHH-hhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 040591 169 VSHLQ-RLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIH 247 (514)
Q Consensus 169 VsEL~-~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~ 247 (514)
+.+|. +|..|++.=.. +.+++++.+..++.......+++.++..-+.++..+...++++.
T Consensus 13 LQ~lD~~i~~l~~~~~~-------------------lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~ 73 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIRE-------------------KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73 (256)
T ss_dssp HHHHHHHHHHTHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcccccccc
Q 040591 248 KCNSKLSGKL 257 (514)
Q Consensus 248 ~~n~~Le~rl 257 (514)
.+..+.++++
T Consensus 74 ~ri~~~~~~l 83 (256)
T 3na7_A 74 AKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 47
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.26 E-value=73 Score=24.22 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=12.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhh
Q 040591 224 RLQEEIDAKDSQVAALRKQLGEIHKC 249 (514)
Q Consensus 224 kLe~e~~~KDsEi~~Lr~~L~el~~~ 249 (514)
+|+.++..-..++..|+++++++.++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444344444455555555443
No 48
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=27.81 E-value=1.8e+02 Score=25.69 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=13.7
Q ss_pred hHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHhhHHhHHHHHh
Q 040591 142 FEASYLQLQTAHVPFVEENIKAADRALVSHLQRLSDFKQFYKD 184 (514)
Q Consensus 142 lKaAY~qLQ~Ah~PyDpekI~aAD~avVsEL~~Ls~LK~~y~~ 184 (514)
-|.-|++=..+.=||.. ++|+ |-+.|.+|-.|-+.|.+
T Consensus 15 ~~~~~~~~ms~~DPF~~----Vk~E-Vq~sl~~l~~l~~~w~~ 52 (130)
T 4dnd_A 15 TENLYFQSMSLEDPFFV----VRGE-VQKAVNTARGLYQRWCE 52 (130)
T ss_dssp ------------CCHHH----HHHH-HHHHHHHHHHHHHHHHH
T ss_pred ccceeeecCCCCCCcHH----HHHH-HHHHHHHHHHHHHHHHH
Confidence 45668887778888853 2222 33445555555555554
No 49
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.11 E-value=1.1e+02 Score=25.67 Aligned_cols=31 Identities=32% Similarity=0.587 Sum_probs=24.9
Q ss_pred HHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 218 LEIVS--NRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 218 yE~~~--~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
++++- ++|..++..++.||..||+++.++..
T Consensus 42 ~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 42 YEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 78899999999999999998887753
No 50
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.09 E-value=1.5e+02 Score=25.89 Aligned_cols=48 Identities=21% Similarity=0.361 Sum_probs=30.9
Q ss_pred hhhHHHHhhhhhhhHHHH----HHHHHHH---------------HhhhhHHHHHHHHHHHHHHhhcc
Q 040591 204 LEHRVQENQSKLRTLEIV----SNRLQEE---------------IDAKDSQVAALRKQLGEIHKCNS 251 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~----~~kLe~e---------------~~~KDsEi~~Lr~~L~el~~~n~ 251 (514)
..+.|+|+|.-+..-|.- .+||+.+ ++.|.+++..|+.||+++.+...
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655555444432 3666544 56677888889999998887543
No 51
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.22 E-value=1.1e+02 Score=27.19 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=26.0
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 040591 212 QSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKC 249 (514)
Q Consensus 212 q~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~ 249 (514)
|++++.++.-++.|.+.++....|+.+||.+...+..+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 33455555556777788888888888888777766543
No 52
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=25.09 E-value=81 Score=29.21 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 218 LEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 218 yE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
.|.-+++|+.++..+|.+|..|++++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 5 LESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556788999999999999999999998886
No 53
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=25.07 E-value=3.2e+02 Score=23.27 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhH---HH
Q 040591 160 NIKAADRALVSHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDS---QV 236 (514)
Q Consensus 160 kI~aAD~avVsEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDs---Ei 236 (514)
.++.|.+++++-=..+-+||..-.... ...-.|+-++..+..|+ ...++|-.+|.. ++
T Consensus 10 ~L~~aEeaL~~kq~~id~lke~~~q~~----------------~~~E~i~vLk~Qv~IY~---~DF~aERadREkl~~eK 70 (94)
T 3jsv_C 10 QLQQAEEALVAKQELIDKLKEEAEQHK----------------IVMETVPVLKAQADIYK---ADFQAERHAREKLVEKK 70 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHH
Confidence 456677777765555566666443310 02244555556554555 777777777765 77
Q ss_pred HHHHHHHHHHHhhccccc
Q 040591 237 AALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 237 ~~Lr~~L~el~~~n~~Le 254 (514)
.+|...|..+.+.|..|.
T Consensus 71 e~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 71 EYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp SHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999999999887764
No 54
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.69 E-value=52 Score=34.13 Aligned_cols=9 Identities=33% Similarity=0.634 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 040591 238 ALRKQLGEI 246 (514)
Q Consensus 238 ~Lr~~L~el 246 (514)
.|..+|.++
T Consensus 49 ~l~n~~~el 57 (403)
T 4etp_A 49 TLHNELQEL 57 (403)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 333344433
No 55
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.82 E-value=1.1e+02 Score=29.60 Aligned_cols=31 Identities=32% Similarity=0.587 Sum_probs=25.6
Q ss_pred HHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 218 LEIVS--NRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 218 yE~~~--~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
||++- ++|..++..++.||..||+++.+|..
T Consensus 111 ~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 111 YEALKENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56554 78999999999999999998887754
No 56
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.44 E-value=5.3e+02 Score=27.48 Aligned_cols=16 Identities=6% Similarity=0.229 Sum_probs=8.4
Q ss_pred HHhhhhhHHHHHHHhh
Q 040591 136 FATFSSFEASYLQLQT 151 (514)
Q Consensus 136 Fa~VSslKaAY~qLQ~ 151 (514)
|.-|-.|+..|.+.|.
T Consensus 120 ~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 120 YQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc
Confidence 4444445555655554
No 57
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=22.99 E-value=70 Score=29.03 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 215 LRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 215 l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
++..+.+++.|+..+..+|.+|..|.++|.+++.
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (192)
T 1ca9_A 5 IEALSSKVQQLERSIGLKDLAMADLEQKVLEMEA 38 (192)
T ss_dssp THHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445667888999999999999999999998875
No 58
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.67 E-value=1.2e+02 Score=24.36 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=15.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Q 040591 223 NRLQEEIDAKDSQVAALRKQLGEIHKCNSK 252 (514)
Q Consensus 223 ~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~ 252 (514)
..|+.....-..|...|+..+..+...|..
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333345566666666666665543
No 59
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.57 E-value=1.6e+02 Score=22.32 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=11.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH
Q 040591 223 NRLQEEIDAKDSQVAALRKQLGEI 246 (514)
Q Consensus 223 ~kLe~e~~~KDsEi~~Lr~~L~el 246 (514)
..|+.+...-.++|..|+.++..+
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555544444
No 60
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.38 E-value=2e+02 Score=23.66 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Q 040591 219 EIVSNRLQEEIDAKDSQVAALRKQLGEIHKCN 250 (514)
Q Consensus 219 E~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n 250 (514)
+.++.+|+.+-..=+..|.-|+.+..|+.+.+
T Consensus 45 ~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 45 EEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66888888888888888888888888887643
No 61
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.21 E-value=1.1e+02 Score=25.72 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=10.8
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHH
Q 040591 204 LEHRVQENQSKLRTLEIVSNRLQE 227 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~~kLe~ 227 (514)
...+|..+|+++...|.-+.+++.
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444433333333
No 62
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.88 E-value=2.2e+02 Score=24.83 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=25.3
Q ss_pred hhhHHHHhhhhhhhHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Q 040591 204 LEHRVQENQSKLRTLEI----VSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~----~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~ 255 (514)
|..++.+.+.+++.-.. .+..|+.++..--..-..|+..|.+++..|-.||+
T Consensus 15 L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 15 LKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 44555544444333221 23445555555444555555555666555555554
No 63
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.58 E-value=1.9e+02 Score=27.43 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Q 040591 222 SNRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSG 255 (514)
Q Consensus 222 ~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~ 255 (514)
+..|+.++..--.....|+..|.+++..|-.||.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555555555555555666666666665555554
No 64
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.35 E-value=2.7e+02 Score=29.70 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 040591 235 QVAALRKQLGEIHKCNSKLS 254 (514)
Q Consensus 235 Ei~~Lr~~L~el~~~n~~Le 254 (514)
.|..|+..|..+..+...||
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~ 188 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLE 188 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.10 E-value=3.1e+02 Score=28.05 Aligned_cols=79 Identities=6% Similarity=0.016 Sum_probs=40.2
Q ss_pred HHHHhhHHhHHHHHhhcCCCCCcccccccccchhhhhHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 040591 170 SHLQRLSDFKQFYKDVCKNPDFIGAEEDLAIGSCLEHRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHKC 249 (514)
Q Consensus 170 sEL~~Ls~LK~~y~~~~k~~~~~~~~~~~~~~s~l~aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~ 249 (514)
..-+...++.+.+.+..++.... ..+.....+...+...+.||.+.+++|.+......+....++++..+.+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~e~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (487)
T 3oja_A 378 NGRRAHAELDGTLQQAVGQIELQ-------HATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEE 450 (487)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCC-------CCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHhhchhhhc-------ccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHH
Confidence 33345566666666644443320 01112233444555666677777777666655555444455555555555
Q ss_pred cccccc
Q 040591 250 NSKLSG 255 (514)
Q Consensus 250 n~~Le~ 255 (514)
+.++++
T Consensus 451 ~~~~~~ 456 (487)
T 3oja_A 451 NARLKK 456 (487)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 554443
No 66
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=21.01 E-value=1.3e+02 Score=26.25 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 040591 218 LEIVSNRLQEEIDAKDSQVAALRKQLGEIHKC 249 (514)
Q Consensus 218 yE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~~ 249 (514)
+|++..-|+.|++.|..++..+++..++++..
T Consensus 74 RetL~~~le~Qi~~kr~e~~~i~~~~~~~~~~ 105 (108)
T 1ykh_A 74 RESLIMLLEEQLEYKRGEIREIEQVCKQVHDK 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999988887753
No 67
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.96 E-value=1.7e+02 Score=24.25 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=30.8
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 040591 208 VQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLGEIHK 248 (514)
Q Consensus 208 iqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~el~~ 248 (514)
+..+...+...+..+++|+.++.....++..|+.+|.+...
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455566667778888888888888888888888887654
No 68
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.81 E-value=1e+02 Score=24.69 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=20.3
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 040591 206 HRVQENQSKLRTLEIVSNRLQEEIDAKDSQVAALRKQLG 244 (514)
Q Consensus 206 aeiqEqq~~l~tyE~~~~kLe~e~~~KDsEi~~Lr~~L~ 244 (514)
..|++++..+..++.....|..+...--.+|..|..++.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555544
No 69
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.79 E-value=1.1e+02 Score=22.50 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Q 040591 221 VSNRLQEEIDAKDSQVAALRKQLGEIHKCNSKL 253 (514)
Q Consensus 221 ~~~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~L 253 (514)
++..||+..+..+....+|.+++.-+++.|.-|
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 445666666666666667777777776666544
No 70
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.45 E-value=1.3e+02 Score=27.25 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=49.2
Q ss_pred hhhHHHHhhhhhhhHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccCHHHHHHHHHH
Q 040591 204 LEHRVQENQSKLRTLEIVS---NRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLSNNLSSSFDVLLTVRVFDSLLHD 280 (514)
Q Consensus 204 l~aeiqEqq~~l~tyE~~~---~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~~~~ls~~~~~lsp~~F~~~l~~ 280 (514)
...++..++.+++-||..- ++|+.++...|.++..|..+|.+........|.....-. .-. ..+|.++|..+=.-
T Consensus 13 ~r~~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie-~El-E~LTasLFeEAN~M 90 (135)
T 2e7s_A 13 SLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN-KEV-EDLTASLFDEANNL 90 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHH-HHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHH
Confidence 3456666677777777643 555667777899999999988877655555444322100 001 17899999987444
Q ss_pred HHH
Q 040591 281 VCR 283 (514)
Q Consensus 281 A~~ 283 (514)
+..
T Consensus 91 Va~ 93 (135)
T 2e7s_A 91 VAD 93 (135)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 71
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=20.40 E-value=1.3e+02 Score=25.16 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=9.0
Q ss_pred hhHHHHhhhhhhhHHHHHHHH
Q 040591 205 EHRVQENQSKLRTLEIVSNRL 225 (514)
Q Consensus 205 ~aeiqEqq~~l~tyE~~~~kL 225 (514)
..+|..++.++...|.-+.+.
T Consensus 43 E~ei~sL~kKiq~lE~eld~~ 63 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333
No 72
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.16 E-value=4.4e+02 Score=24.15 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=37.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhccccccccccCCCCCCCcccCHHHHHHH---HHHHHHHHHH
Q 040591 223 NRLQEEIDAKDSQVAALRKQLGEIHKCNSKLSGKLSNNLSSSFDVLLTVRVFDSL---LHDVCRAAHK 287 (514)
Q Consensus 223 ~kLe~e~~~KDsEi~~Lr~~L~el~~~n~~Le~rl~~~~ls~~~~~lsp~~F~~~---l~~A~~Svr~ 287 (514)
.+|+.+....|.++..|...|.+........|.....-. .-.+ .+|.++|..+ |..|++.-+.
T Consensus 47 ~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie-~ElE-eLTasLFeEAN~MVa~ar~~~~~ 112 (154)
T 2ocy_A 47 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN-KEVE-DLTASLFDEANNMVADARKEKYA 112 (154)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888888888888777665554444322100 0011 7999999976 4455444333
Done!