BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040593
         (342 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8C0C0|ZHX2_MOUSE Zinc fingers and homeoboxes protein 2 OS=Mus musculus GN=Zhx2 PE=1
           SV=1
          Length = 836

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 14/132 (10%)

Query: 200 LDRAVVLEMLGDPPPNLLML---SATLPDKPTPTVLVNEVKHSE--PIVAETTVHAVEPK 254
           L  A+  ++LG P   L  +   S T+   P    +     H +  P+V  T   A EPK
Sbjct: 362 LQTALPCQILGQPSLVLTQVTSGSTTVSCSPITLAVAGVTNHGQKRPLV--TPQAAPEPK 419

Query: 255 ----SKVEEP---VHDRQHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLP 307
               ++V EP   V +     ++ ++  K+Q+  L+  + +S+ P DA +  +++VT L 
Sbjct: 420 RPHIAQVPEPPPKVANTPLTPASDRKKTKLQIAHLKASFLQSQFPDDAEVYRLIEVTGLA 479

Query: 308 RRRIVKWFEDKR 319
           R  I KWF D R
Sbjct: 480 RSEIKKWFSDHR 491



 Score = 33.5 bits (75), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 278 QVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKR 319
           Q+KTLE  + +S  PT A +  +   T L RR I  WF ++R
Sbjct: 540 QLKTLEDSFLKSSFPTQAEVERLRVETKLSRREIDSWFSERR 581


>sp|Q9Y6X8|ZHX2_HUMAN Zinc fingers and homeoboxes protein 2 OS=Homo sapiens GN=ZHX2 PE=1
           SV=1
          Length = 837

 Score = 38.1 bits (87), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 276 KVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKR 319
           K Q+  L+  + +S+ P DA +  +++VT L R  I KWF D R
Sbjct: 448 KEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHR 491



 Score = 32.0 bits (71), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 278 QVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKR 319
           QVK LE  + +S  PT A +  +   T L RR I  WF ++R
Sbjct: 540 QVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERR 581


>sp|F4HQD4|HSP7P_ARATH Heat shock 70 kDa protein 15 OS=Arabidopsis thaliana GN=HSP70-15
           PE=1 SV=1
          Length = 831

 Score = 33.5 bits (75), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 105 STIDDDDEEIDEEDLDKLATELAEALGDVDMDMSDT--ATDGTESDNN---EAHK---ED 156
           S   D  EE  + D DK + E A A GD D++M D    +D T +DN     A K    +
Sbjct: 508 SVTKDQSEETAKMDTDKASAEAAPASGDSDVNMQDAKDTSDATGTDNGVPESAEKPVQME 567

Query: 157 GEDEEEEEEREVRLKNWQLRKLAY-ALKT 184
            + + E  +++V+  N  L +L Y ALKT
Sbjct: 568 TDSKAEAPKKKVKKTNVPLSELVYGALKT 596


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.129    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,713,531
Number of Sequences: 539616
Number of extensions: 6036741
Number of successful extensions: 67436
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 1425
Number of HSP's that attempted gapping in prelim test: 41275
Number of HSP's gapped (non-prelim): 13239
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)