Query 040593
Match_columns 342
No_of_seqs 92 out of 94
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 15:53:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.8 1.9E-19 6.5E-24 137.5 9.1 59 266-324 21-79 (84)
2 2dmt_A Homeobox protein BARH-l 99.8 1.3E-19 4.5E-24 138.1 8.0 61 265-325 15-75 (80)
3 1wh5_A ZF-HD homeobox family p 99.8 1.9E-19 6.5E-24 139.0 8.0 59 265-323 15-77 (80)
4 2ecc_A Homeobox and leucine zi 99.8 1.1E-19 3.8E-24 141.8 5.6 60 267-326 3-62 (76)
5 2cra_A Homeobox protein HOX-B1 99.8 2.4E-19 8.3E-24 133.4 6.8 59 267-325 7-65 (70)
6 1wh7_A ZF-HD homeobox family p 99.8 3.6E-19 1.2E-23 138.1 7.6 58 265-323 15-77 (80)
7 1ig7_A Homeotic protein MSX-1; 99.8 1.9E-19 6.5E-24 128.9 5.5 55 269-323 2-56 (58)
8 3a02_A Homeobox protein arista 99.8 2.1E-19 7.3E-24 129.9 5.8 55 270-324 2-56 (60)
9 2hdd_A Protein (engrailed home 99.8 1.9E-19 6.4E-24 130.6 5.3 56 268-323 4-59 (61)
10 2l7z_A Homeobox protein HOX-A1 99.8 4E-19 1.4E-23 133.7 6.9 62 265-326 5-66 (73)
11 2vi6_A Homeobox protein nanog; 99.8 3.2E-19 1.1E-23 129.7 6.0 56 268-323 4-59 (62)
12 2djn_A Homeobox protein DLX-5; 99.8 4.3E-19 1.5E-23 132.0 6.7 59 267-325 7-65 (70)
13 2da3_A Alpha-fetoprotein enhan 99.8 3E-19 1E-23 134.7 6.0 61 265-325 15-75 (80)
14 2h1k_A IPF-1, pancreatic and d 99.8 2.6E-19 9E-24 130.8 5.4 56 268-323 4-59 (63)
15 2da2_A Alpha-fetoprotein enhan 99.8 4.7E-19 1.6E-23 131.3 6.8 59 267-325 7-65 (70)
16 3rkq_A Homeobox protein NKX-2. 99.8 4.7E-19 1.6E-23 125.6 6.4 56 268-323 3-58 (58)
17 2ly9_A Zinc fingers and homeob 99.8 5.6E-19 1.9E-23 132.1 6.9 62 265-326 4-65 (74)
18 1bw5_A ISL-1HD, insulin gene e 99.8 5.8E-19 2E-23 129.7 6.7 57 268-324 4-60 (66)
19 2dmu_A Homeobox protein goosec 99.8 4.2E-19 1.4E-23 131.8 5.7 57 267-323 7-63 (70)
20 1uhs_A HOP, homeodomain only p 99.8 3.5E-19 1.2E-23 133.1 5.0 66 269-334 3-69 (72)
21 1jgg_A Segmentation protein EV 99.8 4.7E-19 1.6E-23 128.1 5.4 55 269-323 3-57 (60)
22 1akh_A Protein (mating-type pr 99.8 6.9E-19 2.4E-23 127.0 5.8 57 267-323 5-61 (61)
23 1nk2_P Homeobox protein VND; h 99.8 7.3E-19 2.5E-23 133.2 6.2 57 267-323 9-65 (77)
24 2da1_A Alpha-fetoprotein enhan 99.8 5E-19 1.7E-23 131.1 5.1 59 267-325 7-65 (70)
25 3a03_A T-cell leukemia homeobo 99.8 5.4E-19 1.8E-23 126.8 5.0 52 272-323 2-53 (56)
26 1puf_A HOX-1.7, homeobox prote 99.8 1.3E-18 4.3E-23 131.8 7.0 58 266-323 12-69 (77)
27 2cue_A Paired box protein PAX6 99.8 7.7E-19 2.6E-23 133.9 5.8 58 267-324 7-64 (80)
28 2dms_A Homeobox protein OTX2; 99.7 8.3E-19 2.8E-23 133.4 5.8 61 267-327 7-67 (80)
29 1zq3_P PRD-4, homeotic bicoid 99.7 8.5E-19 2.9E-23 130.1 5.7 57 268-324 3-59 (68)
30 2e1o_A Homeobox protein PRH; D 99.7 8.9E-19 3.1E-23 130.3 5.8 56 268-323 8-63 (70)
31 1ahd_P Antennapedia protein mu 99.7 5E-19 1.7E-23 131.5 4.4 57 268-324 3-59 (68)
32 2hi3_A Homeodomain-only protei 99.7 8.3E-19 2.8E-23 131.7 5.6 58 268-325 3-61 (73)
33 2dmq_A LIM/homeobox protein LH 99.7 1E-18 3.4E-23 132.4 5.7 58 267-324 7-64 (80)
34 2dn0_A Zinc fingers and homeob 99.7 1E-18 3.5E-23 132.0 5.7 59 269-327 10-68 (76)
35 1b8i_A Ultrabithorax, protein 99.7 1.1E-18 3.9E-23 133.7 6.0 58 267-324 20-77 (81)
36 1fjl_A Paired protein; DNA-bin 99.7 1.1E-18 3.8E-23 133.0 5.7 59 265-323 16-74 (81)
37 2k40_A Homeobox expressed in E 99.7 1.9E-18 6.6E-23 127.3 6.6 60 268-327 2-61 (67)
38 1ftt_A TTF-1 HD, thyroid trans 99.7 1.4E-18 4.8E-23 128.9 5.6 59 268-326 3-61 (68)
39 2da5_A Zinc fingers and homeob 99.7 1.4E-18 4.9E-23 131.5 5.5 59 269-327 9-67 (75)
40 3a01_A Homeodomain-containing 99.7 2.2E-18 7.5E-23 135.6 6.4 59 266-324 16-74 (93)
41 3nar_A ZHX1, zinc fingers and 99.7 2.1E-18 7.2E-23 135.9 6.2 60 266-325 24-83 (96)
42 2r5y_A Homeotic protein sex co 99.7 1.7E-18 5.7E-23 134.1 5.4 59 266-324 27-85 (88)
43 1yz8_P Pituitary homeobox 2; D 99.7 7.7E-19 2.6E-23 130.0 3.1 58 268-325 4-61 (68)
44 2m0c_A Homeobox protein arista 99.7 4.4E-18 1.5E-22 126.6 7.0 61 267-327 9-69 (75)
45 2da4_A Hypothetical protein DK 99.7 1E-18 3.4E-23 133.0 3.4 59 267-325 8-70 (80)
46 2dmp_A Zinc fingers and homeob 99.7 1.1E-17 3.7E-22 131.0 9.0 60 270-329 16-75 (89)
47 1k61_A Mating-type protein alp 99.7 3.3E-18 1.1E-22 123.4 5.5 54 270-323 1-57 (60)
48 1b72_A Protein (homeobox prote 99.7 4.4E-18 1.5E-22 134.0 5.4 57 267-323 34-90 (97)
49 2cqx_A LAG1 longevity assuranc 99.7 2.3E-18 7.7E-23 130.7 3.1 56 268-323 9-65 (72)
50 2e19_A Transcription factor 8; 99.7 1.3E-17 4.3E-22 124.3 6.7 56 268-323 4-59 (64)
51 1du6_A PBX1, homeobox protein 99.7 1.5E-17 5E-22 121.4 6.1 56 268-323 4-62 (64)
52 2ecb_A Zinc fingers and homeob 99.7 3.8E-17 1.3E-21 130.1 8.8 63 270-332 14-76 (89)
53 1wi3_A DNA-binding protein SAT 99.7 1.6E-17 5.6E-22 129.6 6.5 57 267-323 7-64 (71)
54 1puf_B PRE-B-cell leukemia tra 99.7 2E-17 6.7E-22 123.7 5.7 59 268-326 2-63 (73)
55 1x2n_A Homeobox protein pknox1 99.7 3.3E-17 1.1E-21 122.4 6.2 59 267-325 7-68 (73)
56 3nau_A Zinc fingers and homeob 99.7 2.4E-17 8.1E-22 126.6 4.7 50 274-323 11-60 (66)
57 1mnm_C Protein (MAT alpha-2 tr 99.7 5.1E-17 1.7E-21 125.5 6.5 57 267-323 27-86 (87)
58 1le8_B Mating-type protein alp 99.7 4.7E-17 1.6E-21 125.3 6.2 59 269-327 4-65 (83)
59 1e3o_C Octamer-binding transcr 99.7 4E-17 1.4E-21 139.1 6.1 60 265-324 99-158 (160)
60 2cuf_A FLJ21616 protein; homeo 99.7 3.2E-17 1.1E-21 128.7 5.0 59 267-325 7-80 (95)
61 1b72_B Protein (PBX1); homeodo 99.7 4.4E-17 1.5E-21 125.1 5.5 58 268-325 2-62 (87)
62 1au7_A Protein PIT-1, GHF-1; c 99.7 5.1E-17 1.8E-21 137.1 6.4 59 265-323 85-143 (146)
63 2xsd_C POU domain, class 3, tr 99.7 4.5E-17 1.6E-21 140.1 5.7 62 265-326 97-158 (164)
64 1lfb_A Liver transcription fac 99.7 7.3E-17 2.5E-21 130.1 6.5 62 265-326 7-89 (99)
65 2l9r_A Homeobox protein NKX-3. 99.7 1.1E-16 3.6E-21 121.8 7.0 56 272-327 9-64 (69)
66 3d1n_I POU domain, class 6, tr 99.7 1.2E-16 4.1E-21 134.5 6.8 58 266-323 92-149 (151)
67 2da6_A Hepatocyte nuclear fact 99.6 1.8E-16 6.2E-21 129.9 6.1 59 266-324 5-84 (102)
68 1x2m_A LAG1 longevity assuranc 99.6 1.2E-16 4.1E-21 121.1 4.7 49 275-323 8-57 (64)
69 2d5v_A Hepatocyte nuclear fact 99.6 2.7E-16 9.3E-21 133.2 6.4 60 266-325 96-155 (164)
70 2dmn_A Homeobox protein TGIF2L 99.6 5.8E-16 2E-20 119.6 6.1 59 267-325 7-68 (83)
71 3l1p_A POU domain, class 5, tr 99.6 3.4E-16 1.2E-20 132.9 4.9 58 266-323 95-152 (155)
72 1ic8_A Hepatocyte nuclear fact 99.6 2E-15 6.7E-20 134.4 8.1 129 187-323 42-192 (194)
73 3k2a_A Homeobox protein MEIS2; 99.5 5.1E-15 1.8E-19 110.5 5.0 54 272-325 3-59 (67)
74 2h8r_A Hepatocyte nuclear fact 99.5 1.3E-14 4.4E-19 132.4 8.2 136 186-323 42-219 (221)
75 2da7_A Zinc finger homeobox pr 99.5 1.7E-14 6E-19 112.5 5.6 45 276-320 14-58 (71)
76 1mh3_A Maltose binding-A1 home 99.5 2E-14 6.8E-19 129.9 6.0 55 269-323 367-421 (421)
77 2lk2_A Homeobox protein TGIF1; 99.2 1.2E-11 4.2E-16 99.3 4.5 56 271-326 9-67 (89)
78 2nzz_A Penetratin conjugated G 98.0 8.3E-07 2.8E-11 61.6 -0.6 20 309-328 1-20 (37)
79 1jko_C HIN recombinase, DNA-in 93.6 0.07 2.4E-06 34.6 3.7 35 176-213 12-46 (52)
80 1tc3_C Protein (TC3 transposas 93.0 0.16 5.4E-06 32.1 4.6 40 170-212 6-45 (51)
81 2ys9_A Homeobox and leucine zi 92.8 0.1 3.5E-06 40.8 3.9 41 279-319 18-58 (70)
82 1neq_A DNA-binding protein NER 90.9 0.18 6.1E-06 37.8 3.4 45 171-217 7-51 (74)
83 1wi3_A DNA-binding protein SAT 89.8 0.33 1.1E-05 38.1 4.1 43 169-211 13-58 (71)
84 2k27_A Paired box protein PAX- 89.7 5.5 0.00019 32.0 11.6 103 173-321 29-138 (159)
85 1k78_A Paired box protein PAX5 88.9 2.3 8E-05 33.7 8.6 98 174-320 37-144 (149)
86 2heo_A Z-DNA binding protein 1 85.5 0.9 3.1E-05 33.1 4.0 34 177-210 14-47 (67)
87 1u78_A TC3 transposase, transp 84.9 0.99 3.4E-05 34.8 4.2 96 169-318 6-103 (141)
88 2da3_A Alpha-fetoprotein enhan 84.2 0.87 3E-05 33.6 3.5 44 168-211 22-67 (80)
89 2x48_A CAG38821; archeal virus 82.1 2 7E-05 28.9 4.5 32 177-211 23-54 (55)
90 2elh_A CG11849-PA, LD40883P; s 81.0 2.1 7.2E-05 32.1 4.6 28 181-211 34-61 (87)
91 3rkq_A Homeobox protein NKX-2. 81.0 1.3 4.6E-05 30.4 3.3 43 169-211 8-52 (58)
92 2ly9_A Zinc fingers and homeob 80.6 1.7 5.7E-05 31.8 3.8 43 169-211 12-56 (74)
93 2da7_A Zinc finger homeobox pr 80.0 2.1 7.1E-05 33.4 4.3 40 172-211 14-55 (71)
94 1nd9_A Translation initiation 79.7 0.88 3E-05 30.4 1.9 26 188-213 2-27 (49)
95 2dmq_A LIM/homeobox protein LH 78.7 2 6.8E-05 31.8 3.8 44 169-212 13-58 (80)
96 1jko_C HIN recombinase, DNA-in 78.5 1.3 4.4E-05 28.4 2.4 46 273-323 5-50 (52)
97 1sfx_A Conserved hypothetical 78.4 3.8 0.00013 29.7 5.1 44 166-211 14-57 (109)
98 2da4_A Hypothetical protein DK 78.1 1.2 4.1E-05 33.2 2.4 44 169-212 14-63 (80)
99 1bw5_A ISL-1HD, insulin gene e 78.0 2.9 0.0001 29.9 4.4 43 169-211 9-53 (66)
100 2m0c_A Homeobox protein arista 78.0 2.2 7.7E-05 30.9 3.8 43 169-211 15-59 (75)
101 2da1_A Alpha-fetoprotein enhan 77.7 3 0.0001 30.1 4.4 43 169-211 13-57 (70)
102 3a03_A T-cell leukemia homeobo 77.1 2.6 8.8E-05 29.4 3.8 43 169-211 3-47 (56)
103 1pdn_C Protein (PRD paired); p 77.0 3.5 0.00012 30.7 4.8 35 174-211 22-56 (128)
104 2dn0_A Zinc fingers and homeob 77.0 2.8 9.6E-05 30.9 4.2 43 169-211 14-58 (76)
105 2dmu_A Homeobox protein goosec 76.7 2.6 8.8E-05 30.5 3.8 43 169-211 13-57 (70)
106 1p4w_A RCSB; solution structur 76.4 2.6 8.8E-05 33.0 4.0 51 271-327 32-82 (99)
107 1ig7_A Homeotic protein MSX-1; 76.1 2.8 9.7E-05 29.1 3.8 43 169-211 6-50 (58)
108 1jgg_A Segmentation protein EV 75.9 2.9 9.9E-05 29.4 3.8 43 169-211 7-51 (60)
109 2da5_A Zinc fingers and homeob 75.0 3 0.0001 30.9 3.8 44 169-212 13-58 (75)
110 3nar_A ZHX1, zinc fingers and 74.8 2.7 9.2E-05 32.5 3.7 44 168-211 30-75 (96)
111 1uhs_A HOP, homeodomain only p 74.6 4.2 0.00014 29.6 4.5 43 169-211 7-52 (72)
112 2da2_A Alpha-fetoprotein enhan 74.4 3 0.0001 30.1 3.7 43 169-211 13-57 (70)
113 3nau_A Zinc fingers and homeob 74.4 3.4 0.00012 31.5 4.1 40 172-211 13-54 (66)
114 1fse_A GERE; helix-turn-helix 74.3 3.9 0.00013 28.4 4.1 54 268-327 6-59 (74)
115 3kjx_A Transcriptional regulat 74.2 1.9 6.6E-05 37.8 3.0 31 183-213 5-35 (344)
116 2dms_A Homeobox protein OTX2; 73.8 3.2 0.00011 30.8 3.8 44 169-212 13-58 (80)
117 2glo_A Brinker CG9653-PA; prot 73.8 5.8 0.0002 27.5 4.9 32 180-211 16-48 (59)
118 2e1o_A Homeobox protein PRH; D 73.7 3.1 0.00011 30.2 3.6 44 168-211 12-57 (70)
119 1akh_A Protein (mating-type pr 73.6 3.6 0.00012 28.8 3.8 43 169-211 11-55 (61)
120 2dmt_A Homeobox protein BARH-l 73.5 3.4 0.00011 30.8 3.8 44 168-211 22-67 (80)
121 3a02_A Homeobox protein arista 73.2 4.9 0.00017 28.2 4.4 43 169-211 5-49 (60)
122 1tc3_C Protein (TC3 transposas 72.8 6.9 0.00023 24.3 4.7 43 272-319 4-46 (51)
123 2djn_A Homeobox protein DLX-5; 72.5 2.9 9.9E-05 30.3 3.2 43 169-211 13-57 (70)
124 3h5t_A Transcriptional regulat 72.5 1.9 6.5E-05 38.1 2.6 32 182-213 3-34 (366)
125 2cra_A Homeobox protein HOX-B1 72.4 3.8 0.00013 29.7 3.8 43 169-211 13-57 (70)
126 2dmp_A Zinc fingers and homeob 72.0 3.6 0.00012 31.6 3.8 43 170-212 20-64 (89)
127 2l8n_A Transcriptional repress 72.0 2.9 0.0001 30.8 3.1 27 187-213 8-34 (67)
128 1hlv_A CENP-B, major centromer 71.8 7.3 0.00025 30.1 5.6 48 270-320 4-51 (131)
129 1mij_A Protein prospero; homeo 71.6 3.5 0.00012 36.2 4.0 49 272-320 2-53 (152)
130 1ahd_P Antennapedia protein mu 71.5 5.3 0.00018 28.9 4.4 43 169-211 8-52 (68)
131 1zq3_P PRD-4, homeotic bicoid 71.3 3.4 0.00012 29.9 3.3 43 169-211 8-52 (68)
132 3c57_A Two component transcrip 71.3 5.8 0.0002 30.1 4.7 52 272-329 26-77 (95)
133 1k61_A Mating-type protein alp 71.0 6.3 0.00022 27.5 4.6 43 169-211 4-51 (60)
134 2hdd_A Protein (engrailed home 70.9 4.5 0.00015 28.5 3.8 43 169-211 9-53 (61)
135 1nk2_P Homeobox protein VND; h 70.7 4.2 0.00014 30.1 3.8 43 169-211 15-59 (77)
136 1g2h_A Transcriptional regulat 70.7 6.2 0.00021 28.1 4.5 40 170-212 18-57 (61)
137 2d1h_A ST1889, 109AA long hypo 70.5 7.8 0.00027 28.0 5.1 45 166-211 15-59 (109)
138 3ulq_B Transcriptional regulat 70.1 3.5 0.00012 31.5 3.3 53 269-327 25-77 (90)
139 2ecc_A Homeobox and leucine zi 69.8 5.4 0.00019 30.8 4.3 43 169-211 9-53 (76)
140 2hi3_A Homeodomain-only protei 69.7 6.6 0.00022 28.7 4.6 43 169-211 8-53 (73)
141 1wh7_A ZF-HD homeobox family p 69.7 6 0.00021 30.2 4.5 44 168-212 22-72 (80)
142 1ftt_A TTF-1 HD, thyroid trans 69.4 4.9 0.00017 29.0 3.8 43 169-211 8-52 (68)
143 2rgt_A Fusion of LIM/homeobox 69.4 0.1 3.5E-06 43.5 -5.9 27 268-294 137-163 (169)
144 2vi6_A Homeobox protein nanog; 69.1 5.1 0.00018 28.3 3.8 43 169-211 9-53 (62)
145 2kt0_A Nanog, homeobox protein 69.1 4.7 0.00016 30.0 3.8 44 168-211 27-72 (84)
146 2h1k_A IPF-1, pancreatic and d 68.9 5.2 0.00018 28.4 3.8 43 169-211 9-53 (63)
147 1uxc_A FRUR (1-57), fructose r 68.3 4 0.00014 29.9 3.2 25 189-213 1-25 (65)
148 1fjl_A Paired protein; DNA-bin 68.1 5.2 0.00018 29.8 3.8 43 169-211 24-68 (81)
149 2elh_A CG11849-PA, LD40883P; s 68.0 16 0.00053 27.2 6.5 59 269-332 18-76 (87)
150 2cue_A Paired box protein PAX6 67.7 4.3 0.00015 30.2 3.3 43 169-211 13-57 (80)
151 2l9r_A Homeobox protein NKX-3. 67.2 5.5 0.00019 29.8 3.8 42 170-211 11-54 (69)
152 1yz8_P Pituitary homeobox 2; D 67.1 4.9 0.00017 28.9 3.4 43 169-211 9-53 (68)
153 2k40_A Homeobox expressed in E 67.0 4.7 0.00016 28.9 3.3 43 169-211 7-51 (67)
154 1wh5_A ZF-HD homeobox family p 66.7 5.2 0.00018 30.3 3.6 44 168-211 22-71 (80)
155 2jn6_A Protein CGL2762, transp 66.7 5.3 0.00018 29.8 3.6 23 189-211 24-46 (97)
156 2l7z_A Homeobox protein HOX-A1 66.7 4.9 0.00017 29.5 3.4 43 169-211 13-57 (73)
157 4dyq_A Gene 1 protein; GP1, oc 66.1 2.5 8.6E-05 34.7 1.8 46 166-214 9-55 (140)
158 2glo_A Brinker CG9653-PA; prot 66.0 6.8 0.00023 27.2 3.9 47 271-318 3-49 (59)
159 1x3u_A Transcriptional regulat 65.3 7.7 0.00026 27.4 4.1 50 272-327 15-64 (79)
160 2cyy_A Putative HTH-type trans 65.1 7.6 0.00026 31.1 4.5 40 170-211 5-44 (151)
161 2w25_A Probable transcriptiona 64.4 8.9 0.0003 30.6 4.8 39 170-211 5-44 (150)
162 3e3m_A Transcriptional regulat 64.2 1.4 4.8E-05 38.9 0.0 33 181-213 5-37 (355)
163 1puf_A HOX-1.7, homeobox prote 64.0 7 0.00024 28.8 3.8 43 169-211 19-63 (77)
164 2dbb_A Putative HTH-type trans 63.8 8.2 0.00028 30.7 4.5 34 177-211 13-46 (151)
165 2cfx_A HTH-type transcriptiona 63.3 9.6 0.00033 30.4 4.8 37 173-211 6-42 (144)
166 2lmd_A Prospero homeobox prote 63.3 5.2 0.00018 35.7 3.4 52 269-320 12-66 (174)
167 3e7l_A Transcriptional regulat 63.2 12 0.00043 26.5 4.9 41 170-212 16-56 (63)
168 2ao9_A Phage protein; structur 63.2 2.6 8.9E-05 36.5 1.5 26 187-212 47-72 (155)
169 1b8i_A Ultrabithorax, protein 63.1 7.3 0.00025 29.2 3.8 44 168-211 25-70 (81)
170 1je8_A Nitrate/nitrite respons 63.0 5.6 0.00019 29.4 3.1 50 272-327 20-69 (82)
171 1ub9_A Hypothetical protein PH 62.8 11 0.00037 27.2 4.6 38 171-210 15-52 (100)
172 3r0a_A Putative transcriptiona 62.6 11 0.00039 29.7 5.0 44 167-210 21-64 (123)
173 2r5y_A Homeotic protein sex co 61.8 6.3 0.00021 29.8 3.2 44 168-211 33-78 (88)
174 2p5v_A Transcriptional regulat 61.6 10 0.00036 30.7 4.8 40 170-211 8-47 (162)
175 2e19_A Transcription factor 8; 61.4 7.1 0.00024 28.4 3.4 41 171-211 11-53 (64)
176 3omt_A Uncharacterized protein 61.4 7.9 0.00027 26.9 3.5 26 186-211 19-44 (73)
177 3cuo_A Uncharacterized HTH-typ 61.3 10 0.00035 27.4 4.2 37 172-210 24-60 (99)
178 1i1g_A Transcriptional regulat 61.1 11 0.00039 29.3 4.7 35 174-210 6-40 (141)
179 2cg4_A Regulatory protein ASNC 61.0 11 0.00038 30.1 4.8 40 170-211 6-45 (152)
180 2b5a_A C.BCLI; helix-turn-heli 60.6 15 0.00052 25.2 4.9 25 187-211 22-46 (77)
181 2rnj_A Response regulator prot 60.2 16 0.00054 27.1 5.2 52 270-327 26-77 (91)
182 2oqg_A Possible transcriptiona 59.9 13 0.00045 27.7 4.7 37 171-210 20-56 (114)
183 2ia0_A Putative HTH-type trans 59.8 11 0.00038 31.4 4.8 40 170-211 15-54 (171)
184 2hin_A GP39, repressor protein 59.7 2.6 9E-05 31.9 0.8 29 297-329 13-41 (71)
185 3nrv_A Putative transcriptiona 59.6 16 0.00055 28.0 5.3 42 168-211 36-77 (148)
186 2r0q_C Putative transposon TN5 59.5 14 0.00049 31.2 5.5 37 175-214 165-201 (209)
187 3ppb_A Putative TETR family tr 59.5 15 0.00051 28.1 5.1 32 182-213 23-54 (195)
188 1oyi_A Double-stranded RNA-bin 59.4 8.4 0.00029 30.3 3.7 34 175-210 19-52 (82)
189 3bro_A Transcriptional regulat 59.3 17 0.00059 27.4 5.4 43 169-211 31-73 (141)
190 2q0o_A Probable transcriptiona 59.3 8.8 0.0003 32.8 4.1 51 271-327 173-223 (236)
191 2qvo_A Uncharacterized protein 59.2 11 0.00038 28.0 4.2 45 167-211 7-53 (95)
192 4ich_A Transcriptional regulat 59.0 2.2 7.5E-05 37.3 0.3 121 186-320 41-166 (311)
193 1du6_A PBX1, homeobox protein 58.8 6.2 0.00021 27.9 2.6 43 169-211 9-56 (64)
194 1umq_A Photosynthetic apparatu 58.7 15 0.00052 28.3 5.0 42 169-212 37-78 (81)
195 3c3w_A Two component transcrip 58.5 11 0.00037 31.2 4.4 50 272-327 148-197 (225)
196 1zug_A Phage 434 CRO protein; 57.7 11 0.00037 25.5 3.6 26 186-211 14-39 (71)
197 2hku_A A putative transcriptio 57.6 12 0.00042 29.8 4.5 30 181-211 33-62 (215)
198 1y7y_A C.AHDI; helix-turn-heli 57.6 19 0.00064 24.5 4.9 25 187-211 25-49 (74)
199 2ofy_A Putative XRE-family tra 57.4 18 0.00061 25.8 4.9 36 177-212 16-51 (86)
200 2xi8_A Putative transcription 56.6 13 0.00046 24.5 3.9 25 187-211 13-37 (66)
201 3kz3_A Repressor protein CI; f 56.3 16 0.00055 25.9 4.5 26 186-211 23-48 (80)
202 2jsc_A Transcriptional regulat 55.9 11 0.00038 29.3 3.9 38 171-211 20-57 (118)
203 1b72_A Protein (homeobox prote 55.9 9 0.00031 29.5 3.3 44 168-211 39-84 (97)
204 3eco_A MEPR; mutlidrug efflux 55.7 20 0.0007 27.1 5.2 45 167-211 26-70 (139)
205 1q1h_A TFE, transcription fact 55.4 14 0.00046 28.0 4.2 35 175-210 21-55 (110)
206 3qq6_A HTH-type transcriptiona 55.4 11 0.00039 27.0 3.6 32 186-217 21-54 (78)
207 1mnm_C Protein (MAT alpha-2 tr 55.2 12 0.0004 28.2 3.8 46 166-211 30-80 (87)
208 1x2n_A Homeobox protein pknox1 54.6 9 0.00031 27.8 2.9 43 169-211 13-60 (73)
209 2htj_A P fimbrial regulatory p 54.5 19 0.00064 26.1 4.7 33 178-211 5-37 (81)
210 2rn7_A IS629 ORFA; helix, all 54.4 9.7 0.00033 28.8 3.2 23 189-211 31-53 (108)
211 2ca6_A RAN GTPase-activating p 54.0 4 0.00014 36.4 1.1 8 89-96 322-329 (386)
212 2e1c_A Putative HTH-type trans 54.0 16 0.00055 30.5 4.8 41 169-211 24-64 (171)
213 1qgp_A Protein (double strande 53.9 17 0.00057 27.2 4.4 34 177-210 18-53 (77)
214 1j5y_A Transcriptional regulat 53.6 18 0.00061 30.4 5.0 37 174-210 22-58 (187)
215 2jn6_A Protein CGL2762, transp 53.6 22 0.00075 26.4 5.0 46 271-320 3-49 (97)
216 3gzi_A Transcriptional regulat 53.6 20 0.00068 28.2 5.0 39 174-212 19-61 (218)
217 1adr_A P22 C2 repressor; trans 53.2 20 0.00067 24.5 4.4 25 187-211 17-41 (76)
218 1hlv_A CENP-B, major centromer 53.1 18 0.00063 27.8 4.7 31 182-214 21-51 (131)
219 1puf_B PRE-B-cell leukemia tra 53.1 10 0.00034 27.6 3.0 43 169-211 7-54 (73)
220 1y0u_A Arsenical resistance op 51.4 21 0.00071 26.4 4.6 36 171-210 30-65 (96)
221 3qkx_A Uncharacterized HTH-typ 51.1 18 0.00063 27.5 4.3 30 182-211 22-51 (188)
222 2jpc_A SSRB; DNA binding prote 51.1 8.3 0.00028 26.0 2.1 44 278-327 3-46 (61)
223 2pn6_A ST1022, 150AA long hypo 50.9 14 0.00049 29.2 3.8 36 174-211 5-40 (150)
224 3tgn_A ADC operon repressor AD 50.6 12 0.00041 28.6 3.2 40 169-211 35-74 (146)
225 3a01_A Homeodomain-containing 50.5 12 0.00042 28.8 3.2 44 168-211 22-67 (93)
226 3jth_A Transcription activator 50.5 15 0.0005 27.2 3.6 37 171-210 22-58 (98)
227 2xi8_A Putative transcription 50.4 10 0.00034 25.2 2.4 23 297-319 17-39 (66)
228 3bqz_B HTH-type transcriptiona 50.2 20 0.00069 27.5 4.5 34 179-212 13-46 (194)
229 3f6w_A XRE-family like protein 49.8 25 0.00086 24.7 4.6 26 187-212 26-51 (83)
230 1r69_A Repressor protein CI; g 49.8 15 0.00053 24.6 3.3 25 187-211 13-37 (69)
231 2l0k_A Stage III sporulation p 49.4 16 0.00056 28.7 3.9 24 189-212 21-44 (93)
232 3bs3_A Putative DNA-binding pr 49.2 19 0.00065 24.6 3.8 25 187-211 22-46 (76)
233 2wiu_B HTH-type transcriptiona 49.1 21 0.00071 25.3 4.1 26 186-211 23-48 (88)
234 3kz9_A SMCR; transcriptional r 48.9 21 0.00071 27.6 4.3 30 182-211 31-60 (206)
235 1le8_B Mating-type protein alp 48.8 22 0.00076 26.6 4.4 43 169-211 8-55 (83)
236 3g3z_A NMB1585, transcriptiona 48.8 29 0.001 26.5 5.2 43 167-211 26-68 (145)
237 3lhq_A Acrab operon repressor 48.7 21 0.00072 27.7 4.4 30 182-211 28-57 (220)
238 2r1j_L Repressor protein C2; p 48.6 11 0.00038 25.1 2.4 23 297-319 21-43 (68)
239 1lmb_3 Protein (lambda repress 48.4 23 0.00078 25.4 4.3 26 186-211 28-53 (92)
240 2eth_A Transcriptional regulat 48.4 32 0.0011 26.8 5.4 42 168-211 40-81 (154)
241 3i4p_A Transcriptional regulat 48.4 17 0.00059 29.7 4.0 35 176-211 6-40 (162)
242 3knw_A Putative transcriptiona 48.4 21 0.00073 27.8 4.4 30 182-211 28-57 (212)
243 2ecb_A Zinc fingers and homeob 48.2 17 0.00059 28.5 3.8 44 169-212 17-62 (89)
244 3kkc_A TETR family transcripti 48.0 17 0.00058 27.7 3.7 37 175-211 15-55 (177)
245 2r1j_L Repressor protein C2; p 47.9 19 0.00065 23.9 3.5 25 187-211 17-41 (68)
246 2nnn_A Probable transcriptiona 47.8 29 0.00099 26.0 4.9 40 170-211 36-75 (140)
247 3s8q_A R-M controller protein; 47.8 32 0.0011 24.2 4.9 26 186-211 22-47 (82)
248 2kpj_A SOS-response transcript 47.7 22 0.00075 26.1 4.1 27 185-211 19-45 (94)
249 1r1u_A CZRA, repressor protein 47.6 23 0.0008 26.7 4.4 36 172-210 26-61 (106)
250 2g7s_A Transcriptional regulat 47.6 21 0.00072 27.2 4.2 32 181-212 21-52 (194)
251 3bj6_A Transcriptional regulat 47.4 28 0.00097 26.6 4.9 41 169-211 37-77 (152)
252 1ntc_A Protein (nitrogen regul 47.3 27 0.00093 26.4 4.7 40 170-211 48-87 (91)
253 3dcf_A Transcriptional regulat 47.3 22 0.00076 27.7 4.3 32 182-213 45-76 (218)
254 3b7h_A Prophage LP1 protein 11 47.2 22 0.00074 24.5 3.8 27 186-212 18-44 (78)
255 1zug_A Phage 434 CRO protein; 47.2 12 0.0004 25.3 2.4 24 297-320 19-42 (71)
256 2wte_A CSA3; antiviral protein 47.0 23 0.00078 31.7 4.9 43 167-211 147-189 (244)
257 3f3x_A Transcriptional regulat 46.9 27 0.00092 26.7 4.7 39 169-210 34-72 (144)
258 1fse_A GERE; helix-turn-helix 46.6 25 0.00086 24.1 4.1 38 169-210 11-48 (74)
259 3f1b_A TETR-like transcription 46.6 24 0.00081 27.3 4.4 31 182-212 28-58 (203)
260 1e3o_C Octamer-binding transcr 46.5 17 0.00059 30.5 3.8 44 168-211 106-151 (160)
261 1l3l_A Transcriptional activat 46.5 12 0.00041 31.9 2.9 51 271-327 171-221 (234)
262 1x2m_A LAG1 longevity assuranc 46.5 26 0.00089 26.1 4.4 41 171-211 8-51 (64)
263 3nxc_A HTH-type protein SLMA; 46.3 19 0.00066 28.1 3.8 28 184-211 41-68 (212)
264 1on2_A Transcriptional regulat 46.3 27 0.00092 27.1 4.7 37 174-211 9-45 (142)
265 1pb6_A Hypothetical transcript 46.2 24 0.00082 27.5 4.4 30 182-211 32-61 (212)
266 2k9q_A Uncharacterized protein 46.0 13 0.00046 26.1 2.6 27 186-212 13-39 (77)
267 3mq0_A Transcriptional repress 45.6 13 0.00045 33.2 3.1 33 178-210 35-67 (275)
268 1u2w_A CADC repressor, cadmium 45.4 28 0.00097 27.1 4.7 38 171-211 41-79 (122)
269 2pmy_A RAS and EF-hand domain- 45.4 19 0.00066 25.8 3.5 47 271-317 18-69 (91)
270 2qwt_A Transcriptional regulat 45.4 23 0.0008 28.0 4.3 29 182-211 27-55 (196)
271 2x4h_A Hypothetical protein SS 45.1 35 0.0012 26.2 5.1 43 169-211 10-54 (139)
272 3lwj_A Putative TETR-family tr 45.1 26 0.00088 27.2 4.4 31 181-211 25-55 (202)
273 3fm5_A Transcriptional regulat 45.0 32 0.0011 26.5 4.9 43 168-211 35-77 (150)
274 3bdd_A Regulatory protein MARR 44.9 35 0.0012 25.6 5.0 41 169-211 28-68 (142)
275 3vp5_A Transcriptional regulat 44.8 24 0.00083 28.0 4.3 31 181-211 25-55 (189)
276 2ef8_A C.ECOT38IS, putative tr 44.7 32 0.0011 24.0 4.4 25 187-211 22-46 (84)
277 2o8x_A Probable RNA polymerase 44.2 23 0.00078 24.1 3.5 45 272-321 14-58 (70)
278 3dew_A Transcriptional regulat 44.1 20 0.00067 27.6 3.5 31 181-211 21-51 (206)
279 1z4h_A TORI, TOR inhibition pr 44.1 14 0.00048 26.4 2.5 25 187-211 9-33 (66)
280 2zcm_A Biofilm operon icaabcd 44.0 29 0.00099 27.0 4.5 31 181-211 20-50 (192)
281 3hug_A RNA polymerase sigma fa 44.0 28 0.00097 25.6 4.3 45 272-321 36-80 (92)
282 3bd1_A CRO protein; transcript 44.0 14 0.00049 26.2 2.5 24 296-319 13-36 (79)
283 2f07_A YVDT; helix-turn-helix, 43.9 35 0.0012 27.0 5.1 38 176-213 14-55 (197)
284 3cwr_A Transcriptional regulat 43.9 25 0.00087 27.1 4.2 30 182-211 31-60 (208)
285 2dg8_A Putative TETR-family tr 43.9 22 0.00076 27.9 3.9 31 181-211 22-52 (193)
286 3e6m_A MARR family transcripti 43.9 33 0.0011 27.0 4.9 42 168-211 49-90 (161)
287 3bs3_A Putative DNA-binding pr 43.8 15 0.0005 25.3 2.5 23 297-319 26-48 (76)
288 2yve_A Transcriptional regulat 43.7 27 0.00091 27.5 4.3 31 181-211 17-47 (185)
289 2g7g_A RHA04620, putative tran 43.6 18 0.0006 30.0 3.4 30 180-211 23-52 (213)
290 3bni_A Putative TETR-family tr 43.6 26 0.00088 28.6 4.4 30 182-211 57-86 (229)
291 3cjn_A Transcriptional regulat 43.6 36 0.0012 26.5 5.0 41 169-211 49-89 (162)
292 1qbj_A Protein (double-strande 43.5 37 0.0013 25.9 4.9 34 177-210 14-49 (81)
293 2lkp_A Transcriptional regulat 43.4 37 0.0013 25.7 4.9 37 172-211 32-68 (119)
294 1adr_A P22 C2 repressor; trans 43.4 15 0.0005 25.2 2.4 23 297-319 21-43 (76)
295 3t76_A VANU, transcriptional r 43.3 21 0.00071 27.2 3.5 32 186-217 35-66 (88)
296 2cqx_A LAG1 longevity assuranc 43.1 15 0.00051 27.2 2.6 42 169-211 14-59 (72)
297 2frh_A SARA, staphylococcal ac 43.0 27 0.00092 27.0 4.2 44 167-210 32-75 (127)
298 3mvp_A TETR/ACRR transcription 43.0 27 0.00091 27.3 4.2 31 181-211 39-69 (217)
299 2kko_A Possible transcriptiona 43.0 17 0.00059 27.8 3.0 36 172-210 25-60 (108)
300 1a04_A Nitrate/nitrite respons 42.9 25 0.00086 28.3 4.1 50 272-327 153-202 (215)
301 2qtq_A Transcriptional regulat 42.9 32 0.0011 26.7 4.6 30 182-211 30-59 (213)
302 1mkm_A ICLR transcriptional re 42.8 25 0.00087 30.5 4.4 31 180-210 15-45 (249)
303 1fi6_A EH domain protein REPS1 42.7 31 0.0011 25.2 4.3 44 273-316 2-50 (92)
304 3on4_A Transcriptional regulat 42.7 28 0.00095 26.6 4.2 30 182-211 24-53 (191)
305 1b72_B Protein (PBX1); homeodo 42.6 20 0.00069 26.7 3.3 44 169-212 7-55 (87)
306 1u78_A TC3 transposase, transp 42.6 33 0.0011 26.1 4.6 45 271-320 4-48 (141)
307 3b7h_A Prophage LP1 protein 11 42.5 15 0.00053 25.3 2.5 23 297-319 23-45 (78)
308 2p7v_B Sigma-70, RNA polymeras 42.4 35 0.0012 23.7 4.4 53 273-326 5-57 (68)
309 2cob_A LCOR protein; MLR2, KIA 42.3 17 0.00057 28.3 2.8 42 169-210 10-52 (70)
310 1jgs_A Multiple antibiotic res 42.2 42 0.0014 25.2 5.1 41 169-211 31-71 (138)
311 2xrn_A HTH-type transcriptiona 42.2 24 0.00082 30.7 4.2 31 180-210 13-43 (241)
312 2rae_A Transcriptional regulat 42.2 30 0.001 27.1 4.3 32 182-213 31-62 (207)
313 2rdp_A Putative transcriptiona 42.2 40 0.0014 25.7 5.0 41 169-211 39-79 (150)
314 2b5a_A C.BCLI; helix-turn-heli 42.1 16 0.00054 25.1 2.5 23 297-319 26-48 (77)
315 3d1n_I POU domain, class 6, tr 42.1 23 0.00077 29.3 3.8 44 168-211 98-143 (151)
316 3c2b_A Transcriptional regulat 42.1 30 0.001 27.4 4.4 30 182-211 29-58 (221)
317 2cw1_A SN4M; lambda CRO fold, 42.0 22 0.00076 26.3 3.4 23 190-212 15-37 (65)
318 2l1p_A DNA-binding protein SAT 41.9 20 0.00068 28.8 3.3 51 167-217 11-62 (83)
319 2d6y_A Putative TETR family re 41.6 33 0.0011 27.4 4.6 30 182-211 22-51 (202)
320 3b81_A Transcriptional regulat 41.5 23 0.00078 27.5 3.5 31 181-211 24-54 (203)
321 2nyx_A Probable transcriptiona 41.5 35 0.0012 27.1 4.8 40 169-210 42-81 (168)
322 1au7_A Protein PIT-1, GHF-1; c 41.4 23 0.0008 29.4 3.8 44 168-211 92-137 (146)
323 3egq_A TETR family transcripti 41.3 19 0.00066 27.4 3.1 29 183-211 19-47 (170)
324 2ofy_A Putative XRE-family tra 41.1 40 0.0014 23.9 4.6 23 297-319 30-52 (86)
325 2zb9_A Putative transcriptiona 41.0 29 0.00099 27.5 4.2 31 181-211 36-66 (214)
326 1r69_A Repressor protein CI; g 41.0 17 0.00058 24.3 2.4 24 297-320 17-40 (69)
327 3he0_A Transcriptional regulat 41.0 24 0.00081 27.2 3.5 32 180-211 23-54 (196)
328 3u2r_A Regulatory protein MARR 40.9 23 0.0008 28.1 3.6 42 169-210 43-84 (168)
329 1lj9_A Transcriptional regulat 40.8 38 0.0013 25.6 4.7 41 169-211 26-66 (144)
330 2x48_A CAG38821; archeal virus 40.7 34 0.0012 22.7 3.9 39 273-316 13-53 (55)
331 2dk5_A DNA-directed RNA polyme 40.6 38 0.0013 26.2 4.7 46 166-211 14-59 (91)
332 2eh3_A Transcriptional regulat 40.5 26 0.00087 27.2 3.7 30 182-211 16-45 (179)
333 2dg7_A Putative transcriptiona 40.2 29 0.001 27.0 4.0 31 182-212 21-51 (195)
334 1ku9_A Hypothetical protein MJ 40.2 34 0.0011 25.7 4.2 41 169-210 23-63 (152)
335 3f0c_A TETR-molecule A, transc 40.0 34 0.0012 26.8 4.4 31 181-211 24-54 (216)
336 3rd3_A Probable transcriptiona 40.0 21 0.00071 27.4 3.1 31 181-211 23-53 (197)
337 3vpr_A Transcriptional regulat 39.9 38 0.0013 26.4 4.6 30 182-211 17-46 (190)
338 2a6c_A Helix-turn-helix motif; 39.9 26 0.00089 25.2 3.4 27 186-212 29-55 (83)
339 2fbi_A Probable transcriptiona 39.8 49 0.0017 24.8 5.1 42 168-211 32-73 (142)
340 2pij_A Prophage PFL 6 CRO; tra 39.8 27 0.00092 23.8 3.3 23 190-212 15-37 (67)
341 3col_A Putative transcription 39.8 24 0.00081 27.0 3.3 30 182-211 24-53 (196)
342 3pas_A TETR family transcripti 39.8 19 0.00066 27.5 2.9 30 182-211 22-51 (195)
343 1r1t_A Transcriptional repress 39.8 33 0.0011 27.1 4.3 36 172-210 46-81 (122)
344 3klo_A Transcriptional regulat 39.7 21 0.00073 29.2 3.3 50 272-327 158-207 (225)
345 1z91_A Organic hydroperoxide r 39.6 31 0.001 26.3 4.0 41 169-211 37-77 (147)
346 3g5g_A Regulatory protein; tra 39.5 45 0.0015 25.3 4.9 26 186-211 39-64 (99)
347 3omt_A Uncharacterized protein 39.4 19 0.00063 25.0 2.5 23 297-319 24-46 (73)
348 2o7t_A Transcriptional regulat 39.3 31 0.0011 27.1 4.1 30 182-211 22-51 (199)
349 1s3j_A YUSO protein; structura 39.3 44 0.0015 25.6 4.9 41 169-211 34-74 (155)
350 3pfi_A Holliday junction ATP-d 39.2 34 0.0012 29.9 4.7 36 175-210 266-301 (338)
351 3nqo_A MARR-family transcripti 39.2 40 0.0014 27.7 4.9 42 170-211 39-80 (189)
352 2hr3_A Probable transcriptiona 39.1 46 0.0016 25.3 4.9 41 169-211 32-73 (147)
353 2rek_A Putative TETR-family tr 39.0 32 0.0011 26.9 4.1 29 182-211 30-58 (199)
354 1y7y_A C.AHDI; helix-turn-heli 38.8 19 0.00066 24.4 2.5 23 297-319 29-51 (74)
355 2xsd_C POU domain, class 3, tr 38.7 26 0.00091 29.7 3.8 44 168-211 104-149 (164)
356 2cuf_A FLJ21616 protein; homeo 38.6 26 0.0009 26.8 3.4 44 169-212 13-73 (95)
357 1zk8_A Transcriptional regulat 38.4 21 0.0007 27.5 2.8 30 182-211 22-51 (183)
358 2ewt_A BLDD, putative DNA-bind 38.3 32 0.0011 23.2 3.5 26 186-211 19-46 (71)
359 3k2a_A Homeobox protein MEIS2; 38.0 34 0.0012 24.8 3.8 43 169-211 4-51 (67)
360 2fa5_A Transcriptional regulat 38.0 50 0.0017 25.6 5.1 40 169-210 46-85 (162)
361 3s5r_A Transcriptional regulat 37.9 31 0.0011 27.0 3.8 31 181-211 23-53 (216)
362 3fiw_A Putative TETR-family tr 37.8 28 0.00094 28.9 3.7 36 176-211 29-68 (211)
363 2kpj_A SOS-response transcript 37.7 19 0.00066 26.4 2.5 24 296-319 24-47 (94)
364 2hsg_A Glucose-resistance amyl 37.7 25 0.00084 30.5 3.5 26 188-213 2-27 (332)
365 2pex_A Transcriptional regulat 37.6 46 0.0016 25.6 4.8 40 170-211 45-84 (153)
366 1z0x_A Transcriptional regulat 37.4 32 0.0011 28.5 4.0 29 183-211 20-49 (220)
367 3qbm_A TETR transcriptional re 37.4 29 0.001 26.6 3.5 31 181-211 20-50 (199)
368 2ca6_A RAN GTPase-activating p 37.4 19 0.00066 31.9 2.8 9 88-96 290-298 (386)
369 2hxi_A Putative transcriptiona 37.2 48 0.0016 28.2 5.2 37 175-211 32-72 (241)
370 1sgm_A Putative HTH-type trans 37.1 22 0.00077 27.1 2.8 31 181-211 19-49 (191)
371 2q24_A Putative TETR family tr 37.1 20 0.00069 28.1 2.6 40 278-319 20-59 (194)
372 3mnl_A KSTR, transcriptional r 37.0 22 0.00076 27.5 2.8 30 182-211 34-63 (203)
373 3bqy_A Putative TETR family tr 36.7 35 0.0012 28.2 4.2 35 178-212 12-46 (209)
374 4aci_A HTH-type transcriptiona 36.5 25 0.00085 27.1 3.0 31 182-212 28-58 (191)
375 2ibd_A Possible transcriptiona 36.5 42 0.0014 26.5 4.4 37 175-211 17-57 (204)
376 2opt_A Actii protein; helical 36.5 47 0.0016 28.4 5.1 35 179-213 17-51 (234)
377 2wiu_B HTH-type transcriptiona 36.5 24 0.00081 25.0 2.7 23 297-319 28-50 (88)
378 3pqk_A Biofilm growth-associat 36.4 38 0.0013 25.1 4.0 37 171-210 22-58 (102)
379 2eby_A Putative HTH-type trans 36.4 39 0.0013 25.3 4.1 27 185-211 21-47 (113)
380 2fq4_A Transcriptional regulat 36.3 41 0.0014 26.4 4.4 37 175-211 15-55 (192)
381 1j9i_A GPNU1 DBD;, terminase s 36.3 22 0.00074 25.3 2.5 21 297-317 5-25 (68)
382 1rzs_A Antirepressor, regulato 36.3 31 0.0011 24.2 3.3 32 179-213 4-35 (61)
383 4b8x_A SCO5413, possible MARR- 36.2 49 0.0017 26.1 4.8 45 167-211 30-74 (147)
384 3bru_A Regulatory protein, TET 36.2 40 0.0014 26.5 4.3 30 182-211 44-73 (222)
385 2hin_A GP39, repressor protein 36.1 23 0.00078 26.7 2.7 22 190-211 12-33 (71)
386 2of7_A Putative TETR-family tr 36.0 39 0.0013 28.2 4.4 31 181-211 61-91 (260)
387 2g7u_A Transcriptional regulat 36.0 18 0.00062 31.7 2.4 30 181-210 22-51 (257)
388 2a61_A Transcriptional regulat 35.9 66 0.0022 24.2 5.3 41 169-211 30-70 (145)
389 2bv6_A MGRA, HTH-type transcri 35.9 31 0.0011 26.2 3.4 40 169-210 34-73 (142)
390 3r4k_A Transcriptional regulat 35.9 13 0.00043 32.9 1.4 30 181-210 14-43 (260)
391 3ech_A MEXR, multidrug resista 35.8 35 0.0012 26.1 3.8 40 169-210 34-73 (142)
392 3bdn_A Lambda repressor; repre 35.6 20 0.00068 30.2 2.5 50 270-319 3-55 (236)
393 1c07_A Protein (epidermal grow 35.6 37 0.0013 25.0 3.8 43 274-316 4-51 (95)
394 3rh2_A Hypothetical TETR-like 35.6 40 0.0014 26.6 4.2 31 181-211 16-46 (212)
395 2zkz_A Transcriptional repress 35.6 50 0.0017 24.8 4.5 38 172-211 27-64 (99)
396 3k0l_A Repressor protein; heli 35.5 38 0.0013 26.6 4.0 41 169-211 43-83 (162)
397 1j9i_A GPNU1 DBD;, terminase s 35.4 30 0.001 24.5 3.1 24 188-211 2-25 (68)
398 2d5v_A Hepatocyte nuclear fact 35.4 37 0.0013 28.2 4.1 44 168-211 102-147 (164)
399 2qww_A Transcriptional regulat 35.3 58 0.002 25.0 5.0 40 169-210 38-77 (154)
400 3bpv_A Transcriptional regulat 35.1 70 0.0024 23.9 5.3 41 169-211 26-66 (138)
401 3df8_A Possible HXLR family tr 35.1 31 0.0011 26.7 3.4 39 171-210 26-65 (111)
402 1hqc_A RUVB; extended AAA-ATPa 35.1 52 0.0018 28.3 5.1 42 170-211 245-287 (324)
403 2q24_A Putative TETR family tr 35.0 43 0.0015 26.1 4.2 29 182-211 29-57 (194)
404 2v57_A TETR family transcripti 34.8 45 0.0015 25.7 4.2 27 184-211 29-55 (190)
405 2pjp_A Selenocysteine-specific 34.7 15 0.00051 29.1 1.5 105 176-328 10-117 (121)
406 3frq_A Repressor protein MPHR( 34.6 28 0.00095 27.2 3.1 30 182-211 22-51 (195)
407 3q0w_A HTH-type transcriptiona 34.6 39 0.0013 27.6 4.1 31 182-212 58-88 (236)
408 3cec_A Putative antidote prote 34.6 62 0.0021 23.9 4.9 25 187-211 30-54 (104)
409 3uj3_X DNA-invertase; helix-tu 34.4 8.4 0.00029 32.2 0.0 41 170-213 143-183 (193)
410 3qp6_A CVIR transcriptional re 34.4 28 0.00095 30.8 3.4 50 272-327 196-245 (265)
411 3bja_A Transcriptional regulat 34.3 34 0.0012 25.6 3.4 40 169-210 30-69 (139)
412 1eto_A FIS, factor for inversi 34.2 60 0.002 25.5 4.9 40 170-211 55-94 (98)
413 2rn7_A IS629 ORFA; helix, all 34.1 67 0.0023 24.1 5.0 51 270-320 3-56 (108)
414 1vi0_A Transcriptional regulat 34.1 43 0.0015 26.8 4.2 30 182-211 22-51 (206)
415 2qib_A TETR-family transcripti 34.0 41 0.0014 27.4 4.1 30 182-211 27-56 (231)
416 2ia2_A Putative transcriptiona 34.0 18 0.00062 31.9 2.1 29 182-210 30-58 (265)
417 3kz3_A Repressor protein CI; f 34.0 24 0.00083 24.9 2.4 23 297-319 28-50 (80)
418 2a6c_A Helix-turn-helix motif; 33.7 26 0.00089 25.2 2.6 23 297-319 34-56 (83)
419 2guh_A Putative TETR-family tr 33.7 45 0.0015 27.2 4.3 30 182-211 53-82 (214)
420 3jw4_A Transcriptional regulat 33.5 31 0.0011 26.6 3.1 43 168-210 37-79 (148)
421 2fu4_A Ferric uptake regulatio 33.4 52 0.0018 23.5 4.2 37 174-210 18-60 (83)
422 2ef8_A C.ECOT38IS, putative tr 33.4 26 0.00089 24.4 2.5 23 297-319 26-48 (84)
423 3fmy_A HTH-type transcriptiona 33.1 60 0.002 22.9 4.4 41 272-319 9-49 (73)
424 2jj7_A Hemolysin II regulatory 33.1 31 0.0011 26.6 3.1 30 182-211 21-50 (186)
425 1x57_A Endothelial differentia 33.1 43 0.0015 24.2 3.7 26 186-211 24-49 (91)
426 2l49_A C protein; P2 bacteriop 33.1 38 0.0013 24.6 3.4 26 186-211 15-40 (99)
427 2qwt_A Transcriptional regulat 33.0 29 0.001 27.4 3.0 39 279-319 19-57 (196)
428 1b0n_A Protein (SINR protein); 33.0 38 0.0013 24.9 3.5 26 186-211 12-37 (111)
429 1gdt_A GD resolvase, protein ( 32.9 50 0.0017 27.2 4.5 24 189-212 159-182 (183)
430 2k9q_A Uncharacterized protein 32.8 25 0.00087 24.6 2.3 23 297-319 18-40 (77)
431 2xvc_A ESCRT-III, SSO0910; cel 32.7 27 0.00093 26.5 2.6 24 188-211 25-48 (59)
432 3dpj_A Transcription regulator 32.7 53 0.0018 25.3 4.4 30 182-211 22-51 (194)
433 1z7u_A Hypothetical protein EF 32.7 55 0.0019 25.0 4.4 37 171-210 21-58 (112)
434 2iai_A Putative transcriptiona 32.6 30 0.001 28.2 3.0 34 178-211 40-73 (230)
435 3hta_A EBRA repressor; TETR fa 32.6 46 0.0016 26.9 4.1 31 181-211 41-71 (217)
436 3vib_A MTRR; helix-turn-helix 32.5 52 0.0018 26.0 4.4 36 176-211 14-53 (210)
437 3trb_A Virulence-associated pr 32.5 46 0.0016 25.8 4.0 27 185-211 24-50 (104)
438 2id3_A Putative transcriptiona 32.5 50 0.0017 26.8 4.4 30 182-211 54-83 (225)
439 2jpc_A SSRB; DNA binding prote 32.4 57 0.002 21.7 4.0 31 176-210 5-35 (61)
440 2ict_A Antitoxin HIGA; helix-t 32.4 29 0.00099 25.2 2.7 26 186-211 19-44 (94)
441 2ras_A Transcriptional regulat 32.3 32 0.0011 27.1 3.1 30 182-211 25-54 (212)
442 3l1p_A POU domain, class 5, tr 32.2 18 0.00061 30.3 1.7 44 168-211 101-146 (155)
443 3jsj_A Putative TETR-family tr 32.2 54 0.0018 25.3 4.3 29 182-211 23-51 (190)
444 3g7r_A Putative transcriptiona 32.1 52 0.0018 26.5 4.4 30 182-211 49-78 (221)
445 3ljl_A Transcriptional regulat 32.0 30 0.001 26.7 2.8 30 182-211 28-57 (156)
446 2h09_A Transcriptional regulat 32.0 52 0.0018 25.9 4.3 36 175-211 42-77 (155)
447 3bil_A Probable LACI-family tr 32.0 9.7 0.00033 33.6 0.0 29 185-213 5-33 (348)
448 2xpw_A Tetracycline repressor 31.9 37 0.0013 28.0 3.6 32 181-212 16-47 (207)
449 2gxg_A 146AA long hypothetical 31.9 59 0.002 24.5 4.5 40 169-211 34-73 (146)
450 2o0y_A Transcriptional regulat 31.7 19 0.00063 31.8 1.8 26 185-210 35-60 (260)
451 2jrt_A Uncharacterized protein 31.7 51 0.0017 26.0 4.1 44 169-212 29-73 (95)
452 2dmn_A Homeobox protein TGIF2L 31.6 45 0.0015 25.0 3.7 44 169-212 13-61 (83)
453 2ict_A Antitoxin HIGA; helix-t 31.5 28 0.00096 25.3 2.5 23 297-319 24-46 (94)
454 1yio_A Response regulatory pro 31.4 39 0.0013 26.9 3.5 48 273-326 142-189 (208)
455 3anp_C Transcriptional repress 31.3 56 0.0019 25.7 4.4 31 182-212 23-53 (204)
456 3him_A Probable transcriptiona 31.2 18 0.00062 28.0 1.4 28 183-210 31-58 (211)
457 3bhq_A Transcriptional regulat 31.2 61 0.0021 25.7 4.6 37 175-211 15-55 (211)
458 3f6w_A XRE-family like protein 31.1 29 0.001 24.4 2.4 23 297-319 30-52 (83)
459 3tj1_A RNA polymerase I-specif 30.8 9.8 0.00034 39.6 -0.2 25 187-211 343-367 (649)
460 3tqn_A Transcriptional regulat 30.6 70 0.0024 24.7 4.8 38 173-210 13-55 (113)
461 3deu_A Transcriptional regulat 30.5 70 0.0024 25.6 4.9 41 169-210 50-90 (166)
462 2jvl_A TRMBF1; coactivator, he 30.5 77 0.0026 24.1 4.9 26 186-211 47-72 (107)
463 3i5g_B Myosin regulatory light 30.3 91 0.0031 24.6 5.5 48 269-316 5-59 (153)
464 2ovg_A Phage lambda CRO; trans 30.3 47 0.0016 24.4 3.5 22 190-211 15-36 (66)
465 3oop_A LIN2960 protein; protei 30.1 70 0.0024 24.3 4.6 41 169-211 34-74 (143)
466 2y75_A HTH-type transcriptiona 30.1 72 0.0025 24.7 4.8 27 185-211 23-49 (129)
467 2lnb_A Z-DNA-binding protein 1 30.0 55 0.0019 26.1 4.0 35 176-210 22-56 (80)
468 2ek5_A Predicted transcription 29.9 73 0.0025 25.6 4.9 36 175-210 10-50 (129)
469 1rkt_A Protein YFIR; transcrip 29.9 35 0.0012 27.0 2.9 36 176-211 16-55 (205)
470 4ac0_A Tetracycline repressor 29.8 31 0.001 28.9 2.7 30 182-211 17-46 (202)
471 1ku3_A Sigma factor SIGA; heli 29.8 65 0.0022 22.7 4.1 51 272-323 9-59 (73)
472 2pz9_A Putative regulatory pro 29.6 33 0.0011 27.8 2.8 36 176-211 34-73 (226)
473 1j7q_A CAVP, calcium vector pr 29.6 88 0.003 21.5 4.7 45 272-316 6-60 (86)
474 3h5o_A Transcriptional regulat 29.6 11 0.00038 32.8 0.0 27 187-213 3-29 (339)
475 3eup_A Transcriptional regulat 29.6 21 0.0007 27.6 1.5 30 182-211 25-54 (204)
476 2nx4_A Transcriptional regulat 29.5 62 0.0021 25.5 4.4 36 176-211 14-53 (194)
477 3nnr_A Transcriptional regulat 29.4 57 0.0019 26.1 4.2 30 182-211 19-48 (228)
478 3k2z_A LEXA repressor; winged 29.2 60 0.002 27.2 4.4 40 171-210 4-46 (196)
479 2gen_A Probable transcriptiona 29.2 67 0.0023 25.3 4.5 30 182-211 21-50 (197)
480 3vk0_A NHTF, transcriptional r 29.1 47 0.0016 25.3 3.4 26 187-212 33-58 (114)
481 3cdh_A Transcriptional regulat 29.1 50 0.0017 25.5 3.7 40 169-210 40-79 (155)
482 1uly_A Hypothetical protein PH 28.9 57 0.002 27.9 4.3 39 170-211 18-56 (192)
483 3e7q_A Transcriptional regulat 28.9 36 0.0012 26.3 2.8 30 182-211 28-57 (215)
484 3eus_A DNA-binding protein; st 28.9 83 0.0028 22.7 4.7 26 186-211 25-50 (86)
485 1t33_A Putative transcriptiona 28.9 63 0.0021 25.5 4.3 30 181-211 25-54 (224)
486 3s8q_A R-M controller protein; 28.8 34 0.0012 24.0 2.5 24 296-319 26-49 (82)
487 2obp_A Putative DNA-binding pr 28.8 90 0.0031 24.8 5.1 42 169-210 13-58 (96)
488 3o60_A LIN0861 protein; PSI, M 28.7 82 0.0028 25.4 5.0 30 183-212 35-64 (185)
489 1xn7_A Hypothetical protein YH 28.6 88 0.003 23.7 4.9 34 176-210 5-38 (78)
490 3crj_A Transcription regulator 28.6 47 0.0016 26.4 3.5 30 182-211 28-57 (199)
491 2i10_A Putative TETR transcrip 28.5 71 0.0024 25.4 4.6 36 176-211 15-54 (202)
492 3mzy_A RNA polymerase sigma-H 28.5 65 0.0022 24.5 4.2 43 273-321 109-151 (164)
493 3c07_A Putative TETR-family tr 28.5 60 0.0021 27.8 4.4 29 183-211 56-84 (273)
494 4hbl_A Transcriptional regulat 28.3 88 0.003 24.1 5.0 42 168-211 37-78 (149)
495 1lmb_3 Protein (lambda repress 28.3 34 0.0012 24.5 2.4 23 297-319 33-55 (92)
496 1s7o_A Hypothetical UPF0122 pr 28.2 53 0.0018 26.0 3.7 45 272-321 21-65 (113)
497 1y9q_A Transcriptional regulat 28.2 92 0.0031 25.3 5.3 26 186-211 22-47 (192)
498 3loc_A HTH-type transcriptiona 28.1 39 0.0013 26.2 2.9 36 176-211 22-61 (212)
499 2l49_A C protein; P2 bacteriop 28.0 36 0.0012 24.7 2.5 23 297-319 20-42 (99)
500 4hku_A LMO2814 protein, TETR t 27.9 31 0.0011 27.1 2.3 36 176-211 11-50 (178)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=137.46 Aligned_cols=59 Identities=15% Similarity=0.339 Sum_probs=56.2
Q ss_pred ccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCC
Q 040593 266 HRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGV 324 (342)
Q Consensus 266 ~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~v 324 (342)
.....||.||..||..||.+|..++||+...|+.||..|||++.+|+|||||||+|++-
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 79 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 79 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999874
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=138.14 Aligned_cols=61 Identities=11% Similarity=0.262 Sum_probs=57.1
Q ss_pred cccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 265 QHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 265 q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
......||.||..||..||.+|..++||+...|+.||..|||++.+|+|||||||+|++-.
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 4456799999999999999999999999999999999999999999999999999998743
No 3
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.79 E-value=1.9e-19 Score=139.02 Aligned_cols=59 Identities=19% Similarity=0.333 Sum_probs=55.9
Q ss_pred cccccccccCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 265 QHRWSAQKRLKKVQVKTLEMVYRR----SKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 265 q~~w~kRTrFT~~QLetLErvF~r----T~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
....+.||.||..||+.||..|.. ++||+...|++||..|||++.+|||||||||||++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCC
Confidence 345679999999999999999999 99999999999999999999999999999999976
No 4
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.1e-19 Score=141.82 Aligned_cols=60 Identities=27% Similarity=0.387 Sum_probs=56.5
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPE 326 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~ 326 (342)
+.++|++||++||.+||+.|..++||+..+|++||..|||++.+|+|||||||+|++.-.
T Consensus 3 ~g~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 3 SGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999987543
No 5
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.4e-19 Score=133.38 Aligned_cols=59 Identities=27% Similarity=0.366 Sum_probs=55.8
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
....||+||..|+..||.+|..++||+...|+.||..|||++.+|+|||||||+|++-.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 45689999999999999999999999999999999999999999999999999998753
No 6
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.77 E-value=3.6e-19 Score=138.13 Aligned_cols=58 Identities=9% Similarity=0.221 Sum_probs=54.8
Q ss_pred cccccccccCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 265 QHRWSAQKRLKKVQVKTLEMVYRR-----SKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 265 q~~w~kRTrFT~~QLetLErvF~r-----T~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
....+.||.||.+||+.|| .|.. ++||+...|++||..|||++.+|||||||||+|++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCC
Confidence 3456799999999999999 8999 99999999999999999999999999999999976
No 7
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.9e-19 Score=128.85 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=53.0
Q ss_pred cccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 269 SAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 269 ~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
..||.||..|+..||..|..++||+...|+.||..+||++.+|++||||||+|++
T Consensus 2 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 56 (58)
T 1ig7_A 2 KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhc
Confidence 4799999999999999999999999999999999999999999999999999864
No 8
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.77 E-value=2.1e-19 Score=129.91 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=50.4
Q ss_pred ccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCC
Q 040593 270 AQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGV 324 (342)
Q Consensus 270 kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~v 324 (342)
.||+||..|+..||..|..++||+...|+.||..+||++.+|++||||||+|++-
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 56 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC-
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHh
Confidence 5899999999999999999999999999999999999999999999999999863
No 9
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.77 E-value=1.9e-19 Score=130.60 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=52.1
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
...||.||..|+..||..|..++||+...|+.||..+||++.+|++||||||+|++
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 59 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIK 59 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccc
Confidence 46899999999999999999999999999999999999999999999999999975
No 10
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.77 E-value=4e-19 Score=133.69 Aligned_cols=62 Identities=29% Similarity=0.367 Sum_probs=57.8
Q ss_pred cccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCC
Q 040593 265 QHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPE 326 (342)
Q Consensus 265 q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~ 326 (342)
......||.||..|+..||..|..++||+...|+.||..+||++.+|+|||||||+|++-..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 34567999999999999999999999999999999999999999999999999999987543
No 11
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=3.2e-19 Score=129.72 Aligned_cols=56 Identities=14% Similarity=0.322 Sum_probs=51.2
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
...||.||..|+..||..|..++||+...|+.||..+||++.+|+|||||||+|++
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 4 QKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 59 (62)
T ss_dssp ----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCG
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchh
Confidence 46899999999999999999999999999999999999999999999999999975
No 12
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.3e-19 Score=132.05 Aligned_cols=59 Identities=12% Similarity=0.246 Sum_probs=55.6
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
....||.||..|+.+||.+|..++||+...|+.||..|||++.+|++||||||+|++-.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 35689999999999999999999999999999999999999999999999999998643
No 13
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=134.66 Aligned_cols=61 Identities=25% Similarity=0.390 Sum_probs=56.8
Q ss_pred cccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 265 QHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 265 q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
......||+||.+||..||.+|..++||+...|+.||..|||++.+|+|||||||+|++-.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 3456799999999999999999999999999999999999999999999999999998643
No 14
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.77 E-value=2.6e-19 Score=130.82 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=53.5
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
...||+||..|+..||..|..++||+...|+.||..+||++.+|++||||||+|++
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (63)
T 2h1k_A 4 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWK 59 (63)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999975
No 15
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=4.7e-19 Score=131.26 Aligned_cols=59 Identities=25% Similarity=0.496 Sum_probs=56.0
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
....||+||..|+..||.+|..++||+...|+.||..|||++.+|++||||||+|++--
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 45689999999999999999999999999999999999999999999999999998753
No 16
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.77 E-value=4.7e-19 Score=125.63 Aligned_cols=56 Identities=16% Similarity=0.328 Sum_probs=53.6
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
...||.||..|+..||..|..++||+...++.||..+||++.+|++||||||+|++
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 35799999999999999999999999999999999999999999999999999975
No 17
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=5.6e-19 Score=132.08 Aligned_cols=62 Identities=24% Similarity=0.485 Sum_probs=57.7
Q ss_pred cccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCC
Q 040593 265 QHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPE 326 (342)
Q Consensus 265 q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~ 326 (342)
......||.||..|+..||..|..++||+...|+.||..|||++.+|++||||||+|++--.
T Consensus 4 ~~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 4 PDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 34567999999999999999999999999999999999999999999999999999987544
No 18
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=5.8e-19 Score=129.75 Aligned_cols=57 Identities=30% Similarity=0.501 Sum_probs=54.8
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGV 324 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~v 324 (342)
...||.||..|+..||..|..++||+...++.||..+||++.+|++||||||++++-
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (66)
T 1bw5_A 4 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60 (66)
T ss_dssp SCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhH
Confidence 468999999999999999999999999999999999999999999999999999864
No 19
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-19 Score=131.79 Aligned_cols=57 Identities=18% Similarity=0.367 Sum_probs=54.6
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
....||.||..|+..||..|..++||+...|+.||..|||++.+|++||||||+|++
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~r 63 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWR 63 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccc
Confidence 356899999999999999999999999999999999999999999999999999975
No 20
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=3.5e-19 Score=133.13 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=58.1
Q ss_pred cccccCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCCCCccccC
Q 040593 269 SAQKRLKKVQVKTLEMVYRR-SKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPECRKPFQRS 334 (342)
Q Consensus 269 ~kRTrFT~~QLetLErvF~r-T~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~R~~~qrs 334 (342)
.+||+||..|+..||..|.. ++||+...|+.||..+||++.+|++||||||+|++-...-.+-..|
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~~s 69 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSECRS 69 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCCCcCCC
Confidence 47999999999999999997 9999999999999999999999999999999998765444443333
No 21
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=4.7e-19 Score=128.13 Aligned_cols=55 Identities=18% Similarity=0.363 Sum_probs=53.1
Q ss_pred cccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 269 SAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 269 ~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
..||.||..|+..||..|..++||+...++.||..+||++.+|++||||||+|++
T Consensus 3 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 57 (60)
T 1jgg_A 3 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDK 57 (60)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhh
Confidence 5799999999999999999999999999999999999999999999999999864
No 22
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.75 E-value=6.9e-19 Score=127.05 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=48.6
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
....||.||..|+..||..|..++||+...++.||..|||++.+|++||||||++++
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 456899999999999999999999999999999999999999999999999999974
No 23
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.75 E-value=7.3e-19 Score=133.17 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=54.6
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
....||+||..|+..||..|..++||+...|+.||..+||++.+|+|||||||+|++
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~k 65 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTK 65 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchh
Confidence 456899999999999999999999999999999999999999999999999999975
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=5e-19 Score=131.11 Aligned_cols=59 Identities=19% Similarity=0.416 Sum_probs=55.9
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
....||+||..|+..||.+|..++||+...|+.||..|||++.+|+|||||||+|++--
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 45789999999999999999999999999999999999999999999999999998654
No 25
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.75 E-value=5.4e-19 Score=126.83 Aligned_cols=52 Identities=19% Similarity=0.368 Sum_probs=49.0
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
|.||..|+..||..|..++||+...|+.||..+||++.+|++||||||+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~k 53 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWR 53 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhc
Confidence 7899999999999999999999999999999999999999999999999974
No 26
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.75 E-value=1.3e-18 Score=131.84 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=55.1
Q ss_pred ccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 266 HRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 266 ~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
.....||+||..|+..||.+|..++||+...|+.||..+||++.+|+|||||||+|++
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~k 69 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 69 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999999999999999975
No 27
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=7.7e-19 Score=133.86 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=55.1
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGV 324 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~v 324 (342)
....||.||..|+..||.+|..++||+...|+.||..|||++.+|+|||||||+|++-
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 64 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 64 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999863
No 28
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=8.3e-19 Score=133.42 Aligned_cols=61 Identities=21% Similarity=0.434 Sum_probs=57.0
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
....||+||..||..||.+|..++||+...|+.||..|||++.+|+|||||||+|++--..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 4578999999999999999999999999999999999999999999999999999875443
No 29
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=8.5e-19 Score=130.07 Aligned_cols=57 Identities=14% Similarity=0.322 Sum_probs=54.4
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGV 324 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~v 324 (342)
...||.||..|+..||..|..++||+...|+.||..+||++.+|+|||||||+|++-
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk 59 (68)
T 1zq3_P 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI 59 (68)
T ss_dssp SCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999753
No 30
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=8.9e-19 Score=130.31 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=53.9
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
...||+||..|+..||..|..++||+...|+.||..|||++.+|++||||||+|++
T Consensus 8 ~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~r 63 (70)
T 2e1o_A 8 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWR 63 (70)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcC
Confidence 45899999999999999999999999999999999999999999999999999975
No 31
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.75 E-value=5e-19 Score=131.55 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=54.2
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGV 324 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~v 324 (342)
...||.||..|+..||..|..++||+...|+.||..+||++.+|+|||||||+|++-
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 59 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 59 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhH
Confidence 357999999999999999999999999999999999999999999999999999753
No 32
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=8.3e-19 Score=131.69 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=54.5
Q ss_pred ccccccCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRR-SKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~r-T~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
...||+||..|+..||..|.+ ++||+...|+.||..+||++.+|++||||||+|++-.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999996 9999999999999999999999999999999998643
No 33
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=132.40 Aligned_cols=58 Identities=21% Similarity=0.369 Sum_probs=55.3
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGV 324 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~v 324 (342)
....||.||.+|+..||..|..++||+...|+.||..|||++.+|+|||||||+|++-
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 64 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999864
No 34
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=132.04 Aligned_cols=59 Identities=22% Similarity=0.378 Sum_probs=55.6
Q ss_pred cccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 269 SAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 269 ~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
..||+||..||..||..|..++||+...|+.||..|||++.+|++||||||+|++-...
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 35999999999999999999999999999999999999999999999999999886544
No 35
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.75 E-value=1.1e-18 Score=133.74 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=52.6
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGV 324 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~v 324 (342)
....||.||..|+..||..|..++||+...|+.||..+||++.+|+|||||||+|++-
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 77 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKK 77 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhh
Confidence 4568999999999999999999999999999999999999999999999999999763
No 36
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.74 E-value=1.1e-18 Score=132.99 Aligned_cols=59 Identities=25% Similarity=0.437 Sum_probs=55.4
Q ss_pred cccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 265 QHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 265 q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
......||.||..|+..||..|..++||+...|+.||..|||++.+|++||||||+|++
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~r 74 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLR 74 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhh
Confidence 34567999999999999999999999999999999999999999999999999999975
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=127.30 Aligned_cols=60 Identities=25% Similarity=0.393 Sum_probs=56.1
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
...||.||..|+..||..|..++||+...|+.||..+||++.+|++||||||+|++-...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 357999999999999999999999999999999999999999999999999999875443
No 38
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=1.4e-18 Score=128.87 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=55.4
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPE 326 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~ 326 (342)
...||+||..|+..||..|..++||+...|+.||..+||++.+|++||||||+|++--.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 45899999999999999999999999999999999999999999999999999986543
No 39
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=131.52 Aligned_cols=59 Identities=24% Similarity=0.436 Sum_probs=55.3
Q ss_pred cccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 269 SAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 269 ~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
.+|++||.+||..||..|..++||+...|+.||..|||++.+|+|||||||++++--..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 47899999999999999999999999999999999999999999999999999875443
No 40
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=2.2e-18 Score=135.63 Aligned_cols=59 Identities=17% Similarity=0.357 Sum_probs=55.7
Q ss_pred ccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCC
Q 040593 266 HRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGV 324 (342)
Q Consensus 266 ~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~v 324 (342)
.....||+||..|+..||..|..++||+...|+.||..+||++.+|+|||||||+|++-
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 74 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRR 74 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhh
Confidence 34678999999999999999999999999999999999999999999999999999864
No 41
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.73 E-value=2.1e-18 Score=135.91 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=55.0
Q ss_pred ccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 266 HRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 266 ~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
...++||+||..|+.+||..|..++||+...|+.||..|||++.+|++||||||+|++--
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 345689999999999999999999999999999999999999999999999999998754
No 42
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.73 E-value=1.7e-18 Score=134.06 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=53.5
Q ss_pred ccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCC
Q 040593 266 HRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGV 324 (342)
Q Consensus 266 ~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~v 324 (342)
.....||.||..||..||.+|..++||+...|+.||..+||++.+|+|||||||+|++-
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 34678999999999999999999999999999999999999999999999999999863
No 43
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.73 E-value=7.7e-19 Score=130.02 Aligned_cols=58 Identities=24% Similarity=0.415 Sum_probs=55.1
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
...||.||..|+..||..|..++||+...|+.||..+||++.+|++||||||+|++--
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 4 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp SCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999998643
No 44
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=4.4e-18 Score=126.61 Aligned_cols=61 Identities=21% Similarity=0.386 Sum_probs=56.8
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
....||+||..|+..||.+|..++||+...|+.||..+||++.+|++||||||+|++--.+
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 3568999999999999999999999999999999999999999999999999999876543
No 45
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1e-18 Score=132.96 Aligned_cols=59 Identities=10% Similarity=0.208 Sum_probs=55.8
Q ss_pred cccccccCCHHHHHHHHHHhhhc----CCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRS----KRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT----~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
....||.||..|+.+||..|..+ +||+...|+.||..|||++.+|+|||||||+|++-.
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 45789999999999999999999 999999999999999999999999999999998653
No 46
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=130.99 Aligned_cols=60 Identities=32% Similarity=0.383 Sum_probs=55.0
Q ss_pred ccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCCCC
Q 040593 270 AQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPECRK 329 (342)
Q Consensus 270 kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~R~ 329 (342)
+++.||..||.+||..|..++||+...|+.||..|||++.+|+|||||||+|++--+...
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 556699999999999999999999999999999999999999999999999987655443
No 47
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.72 E-value=3.3e-18 Score=123.42 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=52.4
Q ss_pred ccccCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 270 AQKRLKKVQVKTLEMVYRR---SKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 270 kRTrFT~~QLetLErvF~r---T~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
+||+||..|+..||..|.. ++||+...++.||..+||++.+|++||||||++++
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~k 57 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 57 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccc
Confidence 5899999999999999999 99999999999999999999999999999999975
No 48
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=4.4e-18 Score=134.05 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=52.9
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
....||.||..||..||..|..++||+...|+.||..|||++.+|+|||||||+|++
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~k 90 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQK 90 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHh
Confidence 456899999999999999999999999999999999999999999999999999975
No 49
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=2.3e-18 Score=130.73 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=53.8
Q ss_pred ccccccCCHHHHHHHHHHh-hhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 268 WSAQKRLKKVQVKTLEMVY-RRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF-~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
-..|++++..|+.+||+.| ..++||+...|+.||..+||++.+|||||||||+|++
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r 65 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 65 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCC
Confidence 3578899999999999999 9999999999999999999999999999999999987
No 50
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=124.34 Aligned_cols=56 Identities=27% Similarity=0.361 Sum_probs=52.2
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
.+.+..+++.|+..||..|..++||+...|+.||..+||++.+|+|||||||||..
T Consensus 4 g~~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~ 59 (64)
T 2e19_A 4 GSSGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQI 59 (64)
T ss_dssp SCSCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCC
Confidence 45667788999999999999999999999999999999999999999999999854
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1.5e-17 Score=121.35 Aligned_cols=56 Identities=13% Similarity=0.310 Sum_probs=53.9
Q ss_pred ccccccCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 268 WSAQKRLKKVQVKTLEMVY---RRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF---~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
...||.||..|+..||..| ..++||+...++.||..|||++.+|++||||||++++
T Consensus 4 rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~k 62 (64)
T 1du6_A 4 HIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 62 (64)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSS
T ss_pred CCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhc
Confidence 4689999999999999999 9999999999999999999999999999999999976
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=3.8e-17 Score=130.10 Aligned_cols=63 Identities=24% Similarity=0.372 Sum_probs=56.8
Q ss_pred ccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCCCCccc
Q 040593 270 AQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPECRKPFQ 332 (342)
Q Consensus 270 kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~R~~~q 332 (342)
+.++||.+||.+||+.|..++||+...|++||..|||++.+|+|||||||+|++-.++..-..
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~~~ 76 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEID 76 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCCCC
T ss_pred hhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhhcc
Confidence 345899999999999999999999999999999999999999999999999998766654433
No 53
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.6e-17 Score=129.59 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=53.8
Q ss_pred cccccccCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRR-SKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~r-T~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
..+.||.||.+||..|+..|+. ++|||...|+.||..||||+++|||||||||--.+
T Consensus 7 ~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 7 GPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 4578999999999999999999 99999999999999999999999999999997544
No 54
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.69 E-value=2e-17 Score=123.67 Aligned_cols=59 Identities=12% Similarity=0.275 Sum_probs=55.3
Q ss_pred ccccccCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCC
Q 040593 268 WSAQKRLKKVQVKTLEMVY---RRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPE 326 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF---~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~ 326 (342)
...||+||..|+..||..| ..++||+...++.||..|||++.+|++||||||++++-..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 4689999999999999999 9999999999999999999999999999999999986443
No 55
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.3e-17 Score=122.44 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=54.9
Q ss_pred cccccccCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRR---SKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~r---T~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
....||.|+..|+..||..|.. ++||+...++.||..|||++.+|++||||||++++-+
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 4568999999999999999987 9999999999999999999999999999999997543
No 56
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.67 E-value=2.4e-17 Score=126.56 Aligned_cols=50 Identities=34% Similarity=0.539 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 274 LKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 274 FT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
-|+.||..||+.|.+++||+...|++||..|||++.+|++||||||+|++
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~K 60 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQ 60 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhh
Confidence 47999999999999999999999999999999999999999999999875
No 57
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.67 E-value=5.1e-17 Score=125.53 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=54.3
Q ss_pred cccccccCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRR---SKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~r---T~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
....||+||..|+..||..|.. ++||+...|+.||..|||++.+|++||||||+|++
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4457999999999999999999 99999999999999999999999999999999976
No 58
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.67 E-value=4.7e-17 Score=125.25 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=54.9
Q ss_pred cccccCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 269 SAQKRLKKVQVKTLEMVYRR---SKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 269 ~kRTrFT~~QLetLErvF~r---T~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
.+||+||..|+..||..|.. ++||+...|+.||..|||++.+|++||||||++++-...
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 36788999999999999999 999999999999999999999999999999999987643
No 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.67 E-value=4e-17 Score=139.05 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=53.7
Q ss_pred cccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCC
Q 040593 265 QHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGV 324 (342)
Q Consensus 265 q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~v 324 (342)
.+....||.||..|+.+||..|..++||+...|+.||..+||++.+|+|||||||+|++-
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 355779999999999999999999999999999999999999999999999999999863
No 60
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=3.2e-17 Score=128.66 Aligned_cols=59 Identities=17% Similarity=0.336 Sum_probs=55.7
Q ss_pred cccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------CChhhHHhhhhhhhhccCCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTN---------------LPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~---------------LpesrVQVWFQNRRAKd~vp 325 (342)
....||.||..||..||..|..++||+...|+.||..+| |++.+|++||||||+|++-.
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999 99999999999999998643
No 61
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.67 E-value=4.4e-17 Score=125.07 Aligned_cols=58 Identities=12% Similarity=0.295 Sum_probs=54.4
Q ss_pred ccccccCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 268 WSAQKRLKKVQVKTLEMVY---RRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF---~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
...||.||..|+..||..| ..++||+...|+.||..|||++.+|++||||||+|++-.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 62 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhc
Confidence 3579999999999999999 999999999999999999999999999999999998644
No 62
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.67 E-value=5.1e-17 Score=137.07 Aligned_cols=59 Identities=17% Similarity=0.366 Sum_probs=53.9
Q ss_pred cccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 265 QHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 265 q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
......||+||..|+..||..|..++||+...|+.||..+||++.+|+|||||||+|++
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~k 143 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREK 143 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhh
Confidence 34567899999999999999999999999999999999999999999999999999986
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.66 E-value=4.5e-17 Score=140.13 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=50.9
Q ss_pred cccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCC
Q 040593 265 QHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPE 326 (342)
Q Consensus 265 q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~ 326 (342)
......||+||..|+.+||+.|..++||+...|+.||..+||++.+|+|||||||+|++--.
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 34567999999999999999999999999999999999999999999999999999987543
No 64
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.66 E-value=7.3e-17 Score=130.06 Aligned_cols=62 Identities=19% Similarity=0.380 Sum_probs=53.3
Q ss_pred cccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHH------------------hC---CChhhHHhhhhhhhhccC
Q 040593 265 QHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQV------------------TN---LPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 265 q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~------------------t~---LpesrVQVWFQNRRAKd~ 323 (342)
......||.||..||..||+.|..++||+...|++||.. +| |++.+|+|||||||++++
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 345679999999999999999999999999999999999 88 999999999999999986
Q ss_pred CCC
Q 040593 324 VPE 326 (342)
Q Consensus 324 vp~ 326 (342)
-..
T Consensus 87 ~k~ 89 (99)
T 1lfb_A 87 FRH 89 (99)
T ss_dssp CCC
T ss_pred Hhc
Confidence 543
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=121.82 Aligned_cols=56 Identities=16% Similarity=0.298 Sum_probs=52.1
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
-.+|..|+.+||+.|..++||+...|+.||..+||++.+|||||||||+|++-...
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 35799999999999999999999999999999999999999999999999875443
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=134.52 Aligned_cols=58 Identities=16% Similarity=0.367 Sum_probs=55.4
Q ss_pred ccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 266 HRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 266 ~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
+....||.||..|+..||..|..++||+...|+.||..+||++.+|+|||||||+|++
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~K 149 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLK 149 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccC
Confidence 4467899999999999999999999999999999999999999999999999999986
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=129.93 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=55.5
Q ss_pred ccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHh---------------------CCChhhHHhhhhhhhhccCC
Q 040593 266 HRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVT---------------------NLPRRRIVKWFEDKRAEEGV 324 (342)
Q Consensus 266 ~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t---------------------~LpesrVQVWFQNRRAKd~v 324 (342)
...+.||+||+.|+..||+.|.+++||+...|++||..+ +|++.+|++||||||++++-
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 356789999999999999999999999999999999999 79999999999999999864
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=1.2e-16 Score=121.11 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHh-hhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 275 KKVQVKTLEMVY-RRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 275 T~~QLetLErvF-~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
+..|+.+||+.| ..++||+...|..||..+||++++||+||||||+|++
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k 57 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 57 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccC
Confidence 356899999999 6799999999999999999999999999999999987
No 69
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.63 E-value=2.7e-16 Score=133.17 Aligned_cols=60 Identities=20% Similarity=0.298 Sum_probs=54.0
Q ss_pred ccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 266 HRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 266 ~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
.....||.||..|+..||..|..++||+...|+.||..|||++.+|+|||||||++++--
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 346799999999999999999999999999999999999999999999999999997643
No 70
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.61 E-value=5.8e-16 Score=119.60 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=54.5
Q ss_pred cccccccCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 267 RWSAQKRLKKVQVKTLEMVYRR---SKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 267 ~w~kRTrFT~~QLetLErvF~r---T~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
....||.|+..|+..||..|.. ++||+...|+.||..|||++.+|++||||||++++-+
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 4568999999999999999987 6999999999999999999999999999999998643
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.60 E-value=3.4e-16 Score=132.95 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=55.1
Q ss_pred ccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 266 HRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 266 ~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
...+.||.||..|+..||..|..++||+...|..||..+||++.+|+|||||||+|++
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~K 152 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGK 152 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeecccccccccc
Confidence 3456899999999999999999999999999999999999999999999999999975
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.59 E-value=2e-15 Score=134.37 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=80.1
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcCCCC-chhhhcccCCCCCCCcccccccCCCcccccccccccCCCCCCCCCCCcccc
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGDPPP-NLLMLSATLPDKPTPTVLVNEVKHSEPIVAETTVHAVEPKSKVEEPVHDRQ 265 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~ppP-~ll~mSa~lpdE~~~~~~~~E~~~~~~v~~ets~~a~e~~~~~~lP~~~~q 265 (342)
+.++-..||..+|+....|-.|++.+-+ ...-..+.++== .-...++.. .....+.........+.-|. ..
T Consensus 42 ~gitQ~~lA~~~GiSqs~ISr~l~~~~~~~~~kraaly~W~---~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~--~~ 113 (194)
T 1ic8_A 42 HNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAALYTWY---VRKQREVAQ---QFTHAGQGGLIEEPTGDELP--TK 113 (194)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHHHHHHHHHH---HHHTTTTHH---HHCCC-------------------
T ss_pred cCCCHHHHHHHhCCChHHHHHHHhcCccccccccccchhhH---HHhhhhhhc---cccCCCCCCCCCCCcccccc--cc
Confidence 6788999999999999999999987432 211111100000 000000000 00000000000000111122 23
Q ss_pred ccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------------CChhhHHhhhhhhhhccC
Q 040593 266 HRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTN---------------------LPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 266 ~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~---------------------LpesrVQVWFQNRRAKd~ 323 (342)
...+.||.||..|+..||+.|..++||+...|+.||..+| |++.+|++||||||++++
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 4578999999999999999999999999999999999999 999999999999999976
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=5.1e-15 Score=110.52 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=48.8
Q ss_pred ccCCHHHHHHHHHHhh---hcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCC
Q 040593 272 KRLKKVQVKTLEMVYR---RSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVP 325 (342)
Q Consensus 272 TrFT~~QLetLErvF~---rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp 325 (342)
..|+++|+..||..|. .++||+...++.||..|||++.+|++||||||++.+-+
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP 59 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHH
Confidence 4799999999999999 99999999999999999999999999999999987643
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=132.39 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=82.8
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcCCCC-chhhhcccC-----------CCCCCCccccccc-----CCCccccccccc
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGDPPP-NLLMLSATL-----------PDKPTPTVLVNEV-----KHSEPIVAETTV 248 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ppP-~ll~mSa~l-----------pdE~~~~~~~~E~-----~~~~~v~~ets~ 248 (342)
.|.++-+.||..+|+..+.|-.|++.+-+ .+.-+++.| ..+.. ++..... ...++....+..
T Consensus 42 ~~gltQ~evA~~tGISqS~ISq~e~~g~~~t~~k~a~~y~Wy~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 120 (221)
T 2h8r_A 42 QHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREILRQFNQ-TVQSSGNMTDKSSQDQLLFLFPEF 120 (221)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTTT-CC----------------------
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhhhhhcccc-cccccccccccccccchhhhhhhh
Confidence 36789999999999999999999986543 333333221 00100 0000000 000000000001
Q ss_pred ccCC--C--CCCCCCCCccccccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC-------------------
Q 040593 249 HAVE--P--KSKVEEPVHDRQHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTN------------------- 305 (342)
Q Consensus 249 ~a~e--~--~~~~~lP~~~~q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~------------------- 305 (342)
-+.. + .+... .-+......+.||.|++.|+..||+.|.+++||+...|++||..+|
T Consensus 121 ~~~~~~~~~~~~~~-~~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~ 199 (221)
T 2h8r_A 121 SQQSHGPGQSDDAC-SEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGS 199 (221)
T ss_dssp ----------------------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTT
T ss_pred hccccCCCCCcccc-cccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccc
Confidence 0000 0 00000 0112244678999999999999999999999999999999999998
Q ss_pred --CChhhHHhhhhhhhhccC
Q 040593 306 --LPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 306 --LpesrVQVWFQNRRAKd~ 323 (342)
|++.+|++||||||++..
T Consensus 200 ~~lte~~V~~WFqNRR~~~~ 219 (221)
T 2h8r_A 200 NLVTEVRVYNWFANRRKEEA 219 (221)
T ss_dssp SCCCHHHHHHHHHHHHTTCC
T ss_pred cccCHHHHHHHhHHhhhhhh
Confidence 899999999999999864
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=112.50 Aligned_cols=45 Identities=22% Similarity=0.481 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhh
Q 040593 276 KVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRA 320 (342)
Q Consensus 276 ~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRA 320 (342)
+.|+..||.+|+.++||+...+.+||..||||.++|||||||||+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 578999999999999999999999999999999999999999998
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.49 E-value=2e-14 Score=129.95 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=52.9
Q ss_pred cccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 269 SAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 269 ~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
..|+.|+.+|+..||+.|+.++||+...|++||+.|||++++||+||||||+|++
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4688999999999999999999999999999999999999999999999999975
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=99.27 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=51.3
Q ss_pred cccCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCC
Q 040593 271 QKRLKKVQVKTLEMVYRR---SKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPE 326 (342)
Q Consensus 271 RTrFT~~QLetLErvF~r---T~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~ 326 (342)
---|++.++..|+.-|.. ++||+...++.||..|||++.+|++||||||++.+-+.
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 346899999999999987 99999999999999999999999999999999986443
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.95 E-value=8.3e-07 Score=61.56 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=16.3
Q ss_pred hhHHhhhhhhhhccCCCCCC
Q 040593 309 RRIVKWFEDKRAEEGVPECR 328 (342)
Q Consensus 309 srVQVWFQNRRAKd~vp~~R 328 (342)
++|+|||||||||++--...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 47999999999999865443
No 79
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=93.59 E-value=0.07 Score=34.59 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 176 RKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 176 ~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
+.+...+..| .++..||+.||+.+..|-.||+...
T Consensus 12 ~~i~~l~~~g---~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 12 EQISRLLEKG---HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp HHHHHHHHTT---CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred HHHHHHHHcC---CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 3444456667 7999999999999999999998643
No 80
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=93.01 E-value=0.16 Score=32.11 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=29.7
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
|..-+...+...+..| .+++.||+.||+.+..|-.|++..
T Consensus 6 l~~~~~~~i~~~~~~g---~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 6 LSDTERAQLDVMKLLN---VSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHhhH
Confidence 3333343444456666 589999999999999999999864
No 81
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.77 E-value=0.1 Score=40.77 Aligned_cols=41 Identities=17% Similarity=0.501 Sum_probs=38.1
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhh
Q 040593 279 VKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 279 LetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRR 319 (342)
.+.|+++|...+...-.-.++|+.+++|+-.+|+.||-.|=
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k~ 58 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRL 58 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHHS
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999997653
No 82
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=90.95 E-value=0.18 Score=37.79 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCCCCchh
Q 040593 171 KNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDPPPNLL 217 (342)
Q Consensus 171 ~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ppP~ll 217 (342)
..|-..++..+++ .+..+...||+.+|+.++.|-.|+.+|-|...
T Consensus 7 ~~~~~~ri~~~l~--~~glT~~~LA~~~Gvs~stls~~~~~~~p~~~ 51 (74)
T 1neq_A 7 RDWHRADVIAGLK--KRKLSLSALSRQFGYAPTTLANALERHWPKGE 51 (74)
T ss_dssp SSCCHHHHHHHHH--TTSCCHHHHHHHHSSCHHHHHHTTTSSCHHHH
T ss_pred CCCCHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHcCCCccHH
Confidence 3687888888887 77899999999999999999999998666543
No 83
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=89.78 E-value=0.33 Score=38.05 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=38.7
Q ss_pred hhchHHHHHHHHHHHh-cCccc--cHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKT-GRRKV--SVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~-GRRKv--sIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+|+..|+.+++. |+.-. -++.||++|||.-..|.=|+.|
T Consensus 13 ~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQN 58 (71)
T 1wi3_A 13 KISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQN 58 (71)
T ss_dssp CCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhcc
Confidence 6789999999999999 88754 4789999999999999999876
No 84
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=89.69 E-value=5.5 Score=32.03 Aligned_cols=103 Identities=14% Similarity=0.047 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCCCCchhhhcccCCCCCCCcccccccCCCcccccccccccCC
Q 040593 173 WQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDPPPNLLMLSATLPDKPTPTVLVNEVKHSEPIVAETTVHAVE 252 (342)
Q Consensus 173 WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ppP~ll~mSa~lpdE~~~~~~~~E~~~~~~v~~ets~~a~e 252 (342)
-+..++...+..| .++..+|+.||+.+..|-.|++..-.. +.. .
T Consensus 29 e~r~~ii~l~~~G---~s~~~IA~~lgis~~TV~rwl~r~~~~-----------------------G~~--~-------- 72 (159)
T 2k27_A 29 VVRQRIVDLAHQG---VRPCDISRQLRVSHGCVSKILGRYYET-----------------------GSI--R-------- 72 (159)
T ss_dssp HHHHHHHHHHHHT---CCHHHHHHHHTCCSHHHHHHHCCSSTT-----------------------SCC--C--------
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHHHHhc-----------------------CCc--c--------
Confidence 3334444555666 699999999999999999999975310 000 0
Q ss_pred CCCCCCCCCccccccccccccCCHHHHHHHHHHhhhcCCCCHHH-HHHHHHH------hCCChhhHHhhhhhhhhc
Q 040593 253 PKSKVEEPVHDRQHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAM-ISSIVQV------TNLPRRRIVKWFEDKRAE 321 (342)
Q Consensus 253 ~~~~~~lP~~~~q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~-RE~LA~~------t~LpesrVQVWFQNRRAK 321 (342)
| .......+..++..+.+.+...+..++.-+... .+.|... ..++.+.|..|+...+.+
T Consensus 73 -------~---~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~ 138 (159)
T 2k27_A 73 -------P---GVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 138 (159)
T ss_dssp -------C---CCCCCCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCC
T ss_pred -------C---CCCCCCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCC
Confidence 0 000111234566667777777776554333322 2223222 258899999999876554
No 85
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.89 E-value=2.3 Score=33.71 Aligned_cols=98 Identities=14% Similarity=0.072 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCCCCchhhhcccCCCCCCCcccccccCCCcccccccccccCCC
Q 040593 174 QLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDPPPNLLMLSATLPDKPTPTVLVNEVKHSEPIVAETTVHAVEP 253 (342)
Q Consensus 174 Ql~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ppP~ll~mSa~lpdE~~~~~~~~E~~~~~~v~~ets~~a~e~ 253 (342)
+..++...+..| .++..+|+.||+.+..|-.|++..-.. |.. .
T Consensus 37 ~r~~iv~~~~~G---~s~~~iA~~lgis~~TV~rw~~~~~~~-----------------------G~~--~--------- 79 (149)
T 1k78_A 37 VRQRIVELAHQG---VRPCDISRQLRVSHGCVSKILGRYYET-----------------------GSI--K--------- 79 (149)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHHHHHHH-----------------------SCC--C---------
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHHHHHc-----------------------CCC--C---------
Confidence 334444455666 699999999999999999999864100 000 0
Q ss_pred CCCCCCCCccccccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHh--------C--CChhhHHhhhhhhhh
Q 040593 254 KSKVEEPVHDRQHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVT--------N--LPRRRIVKWFEDKRA 320 (342)
Q Consensus 254 ~~~~~lP~~~~q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t--------~--LpesrVQVWFQNRRA 320 (342)
| .....+.+..++..+.+.+.......+.-+. .+|+..+ | ++.+.|..|......
T Consensus 80 ------~---~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~---~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 80 ------P---GVIGGSKPKVATPKVVEKIAEYKRQNPTMFA---WEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp ------C---CCCCCCCCSSSCHHHHHHHHHHHHHCTTCCH---HHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred ------c---cCCCCCCCCCCCHHHHHHHHHHHHhCcchhH---HHHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 0 0011122345788888888888776544333 3444444 5 789999999876544
No 86
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=85.47 E-value=0.9 Score=33.06 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=26.9
Q ss_pred HHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 177 KLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 177 rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
++-.+|+...+.+++++||+.||++|+.|-..|+
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4555666544569999999999999999987765
No 87
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=84.86 E-value=0.99 Score=34.77 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=62.8
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCCCCchhhhcccCCCCCCCcccccccCCCccccccccc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDPPPNLLMLSATLPDKPTPTVLVNEVKHSEPIVAETTV 248 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ppP~ll~mSa~lpdE~~~~~~~~E~~~~~~v~~ets~ 248 (342)
.|..-+...+...++.| .++..+|+.||+.+..|-.|++.+... . ..
T Consensus 6 ~~s~~~r~~i~~~~~~G---~s~~~ia~~lgis~~Tv~r~~~~~~~~--------g---------------~~------- 52 (141)
T 1u78_A 6 ALSDTERAQLDVMKLLN---VSLHEMSRKISRSRHCIRVYLKDPVSY--------G---------------TS------- 52 (141)
T ss_dssp CCCHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHHSGGGT--------T---------------CC-------
T ss_pred cCCHHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHccccc--------C---------------Cc-------
Confidence 34444555555666777 699999999999999999999864210 0 00
Q ss_pred ccCCCCCCCCCCCccccccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC--CChhhHHhhhhhh
Q 040593 249 HAVEPKSKVEEPVHDRQHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTN--LPRRRIVKWFEDK 318 (342)
Q Consensus 249 ~a~e~~~~~~lP~~~~q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~--LpesrVQVWFQNR 318 (342)
. + .. ....++.++...+... ..++.-+ ..+|+..+| ++.+.|..|+...
T Consensus 53 ----~------~------~g-r~~~l~~~~~~~i~~~-~~~~~~s---~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 53 ----K------R------AP-RRKALSVRDERNVIRA-ASNSCKT---ARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp ----C------C------CC-CCCSSCHHHHHHHHHH-HHHCCCC---HHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred ----C------C------CC-CCCcCCHHHHHHHHHH-HhCCCCC---HHHHHHHHCCCccHHHHHHHHHHC
Confidence 0 0 01 1124677777777666 3333322 356888888 7999999999754
No 88
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=84.19 E-value=0.87 Score=33.60 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=37.3
Q ss_pred hhhchHHHHHHHHHHHhcCccc--cHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRKV--SVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRKv--sIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+...|+..|..++.....-. -+..||.+|||....|--|+.|
T Consensus 22 t~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 67 (80)
T 2da3_A 22 TTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQN 67 (80)
T ss_dssp SSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHH
Confidence 3578899999999999886432 3578999999999999999976
No 89
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=82.14 E-value=2 Score=28.88 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=25.3
Q ss_pred HHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 177 KLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 177 rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...+..| .++++||+.||+.+..|-.|++.
T Consensus 23 ~i~~l~~~g---~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 23 VAHELAKMG---YTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHTT---CCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHh
Confidence 333335566 49999999999999999999864
No 90
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=80.98 E-value=2.1 Score=32.07 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=24.1
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..| .++..||++||+.++.|-.|++.
T Consensus 34 ~~~~g---~s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 34 RIHDG---ESKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp HHHHT---CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHCC---CCHHHHHHHHCcCHHHHHHHHHH
Confidence 34455 69999999999999999999975
No 91
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=80.97 E-value=1.3 Score=30.39 Aligned_cols=43 Identities=21% Similarity=0.119 Sum_probs=36.2
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||..|||.-..|=-|+.|
T Consensus 8 ~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 52 (58)
T 3rkq_A 8 LFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQN 52 (58)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHH
Confidence 46789999999999877652 34678999999999999999876
No 92
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=80.56 E-value=1.7 Score=31.80 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=36.9
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+|+..|+.++.....- ..+..||..|||....|--|+.|
T Consensus 12 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 56 (74)
T 2ly9_A 12 KKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSD 56 (74)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChh
Confidence 57789999999999987652 34678999999999999999986
No 93
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.00 E-value=2.1 Score=33.44 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhcCcccc--HHHHHHHhcCCHHHHHHHhcC
Q 040593 172 NWQLRKLAYALKTGRRKVS--VKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 172 ~WQl~rLarAL~~GRRKvs--Ik~LA~EL~LDRa~VL~wLR~ 211 (342)
.+|+..|..+++.-.+-+. |..||..|||+..+|=-|+.|
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqN 55 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQ 55 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhh
Confidence 5799999999999887654 889999999999999999988
No 94
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=79.74 E-value=0.88 Score=30.40 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.7
Q ss_pred cccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 188 KVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 188 KvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
++.|.+||+|||++-..|++.|+..+
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~g 27 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADAG 27 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHHT
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHcC
Confidence 46789999999999999999998543
No 95
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.66 E-value=2 Score=31.80 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=37.1
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.+...|+..|+.++.....- ..+..||.+|||....|--|+.|-
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 58 (80)
T 2dmq_A 13 SFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNA 58 (80)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHH
Confidence 56788999999999987642 347799999999999999999873
No 96
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=78.52 E-value=1.3 Score=28.41 Aligned_cols=46 Identities=4% Similarity=0.171 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 273 RLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 273 rFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
.|+..+...+-..+... ....+||..+|++...|..|++.-..+.+
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~~~~ 50 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSIKKR 50 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC----
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHcccccc
Confidence 46666665555555432 24678999999999999999986555443
No 97
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=78.37 E-value=3.8 Score=29.65 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=35.3
Q ss_pred hhhhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 166 REVRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 166 r~~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+...|..+|...|..-...|. +++++||+.||++++.|-..|+.
T Consensus 14 ~~~~l~~~~~~il~~l~~~~~--~s~~ela~~l~is~~tv~~~l~~ 57 (109)
T 1sfx_A 14 EKLSFKPSDVRIYSLLLERGG--MRVSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp HHTCCCHHHHHHHHHHHHHCC--BCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHcCC--CCHHHHHHHHCCCHHHHHHHHHH
Confidence 345677788888876666554 89999999999999999888764
No 98
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.06 E-value=1.2 Score=33.22 Aligned_cols=44 Identities=20% Similarity=0.370 Sum_probs=36.8
Q ss_pred hhchHHHHHHHHHHHhc----Cc--cccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 169 RLKNWQLRKLAYALKTG----RR--KVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~G----RR--KvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.+...|+..|+.++... .. ..-+..||.+|||....|--|+.|-
T Consensus 14 ~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNr 63 (80)
T 2da4_A 14 QFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNR 63 (80)
T ss_dssp CCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHH
Confidence 46789999999999877 43 2356789999999999999999774
No 99
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=78.03 E-value=2.9 Score=29.88 Aligned_cols=43 Identities=19% Similarity=0.120 Sum_probs=36.2
Q ss_pred hhchHHHHHHHHHHHhcCccc--cHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKV--SVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKv--sIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|..++.....-. .+..||.+|||.-..|--|+.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (66)
T 1bw5_A 9 VLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQN 53 (66)
T ss_dssp CCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHH
Confidence 466789999999999876532 3678999999999999999976
No 100
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=77.98 E-value=2.2 Score=30.89 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=37.1
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+|+..|..++.....- ..+..||..|||.-..|=-|+.|
T Consensus 15 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 59 (75)
T 2m0c_A 15 TFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN 59 (75)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHH
Confidence 57889999999999987752 34678999999999999999986
No 101
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=77.71 E-value=3 Score=30.09 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=36.6
Q ss_pred hhchHHHHHHHHHHHhcCc--cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRR--KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRR--KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++..... ...+..||.+|||.-..|--|+.|
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2da1_A 13 RITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRN 57 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhh
Confidence 5678999999999988754 235789999999999999999975
No 102
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=77.13 E-value=2.6 Score=29.42 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=35.3
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||+.|||.-..|--|+.|
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 47 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQN 47 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHH
Confidence 35678999999999987653 24578999999999999999876
No 103
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=77.01 E-value=3.5 Score=30.68 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 174 QLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 174 Ql~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..++...+..| .|+..+|+.||+.+..|-.|++.
T Consensus 22 ~r~~i~~~~~~g---~s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 22 IRLKIVEMAADG---IRPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHH
Confidence 334444455666 69999999999999999999975
No 104
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.96 E-value=2.8 Score=30.94 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=37.1
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+-..|+..|+.++.....- ..+..||+.|||....|--|+.|
T Consensus 14 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqN 58 (76)
T 2dn0_A 14 KKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSD 58 (76)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHH
Confidence 67889999999999887652 34678999999999999999976
No 105
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.65 E-value=2.6 Score=30.53 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=36.4
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2dmu_A 13 IFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKN 57 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccc
Confidence 56789999999999986542 34678999999999999999976
No 106
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=76.42 E-value=2.6 Score=33.04 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=43.3
Q ss_pred cccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 271 QKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 271 RTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
...||..|.+.|.-.+.-- ...+||..+|+++..|..+.++-+.|.||..+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r 82 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLGVDND 82 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 4569999999998876433 33889999999999999999999999998764
No 107
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=76.09 E-value=2.8 Score=29.07 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=35.9
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|
T Consensus 6 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 50 (58)
T 1ig7_A 6 PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQN 50 (58)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhH
Confidence 45678999999999987642 24678999999999999999876
No 108
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=75.90 E-value=2.9 Score=29.38 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=35.9
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|
T Consensus 7 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 51 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQN 51 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHH
Confidence 45678999999999987642 34678999999999999999876
No 109
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.00 E-value=3 Score=30.92 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=37.3
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.....|+..|+.++.....- ..+..||++|||....|--|+.|-
T Consensus 13 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNR 58 (75)
T 2da5_A 13 ERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSER 58 (75)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHH
Confidence 56789999999999987653 346789999999999999999773
No 110
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=74.79 E-value=2.7 Score=32.52 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=37.4
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+..+|+..|..++.....- ..+..||..|||....|--|+.|
T Consensus 30 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 75 (96)
T 3nar_A 30 CKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGD 75 (96)
T ss_dssp SSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchh
Confidence 357899999999999986642 34678999999999999999986
No 111
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=74.57 E-value=4.2 Score=29.62 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=35.5
Q ss_pred hhchHHHHHHHHHHHhcCccc---cHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKV---SVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKv---sIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++...-+.. -+..||++|||.-..|--|+.|
T Consensus 7 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 52 (72)
T 1uhs_A 7 TMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQ 52 (72)
T ss_dssp CCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHH
Confidence 567899999999998633333 3678999999999999999976
No 112
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=74.42 E-value=3 Score=30.05 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=36.2
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2da2_A 13 RFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQN 57 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHh
Confidence 56789999999999986642 23678999999999999999976
No 113
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=74.38 E-value=3.4 Score=31.51 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhcCccc--cHHHHHHHhcCCHHHHHHHhcC
Q 040593 172 NWQLRKLAYALKTGRRKV--SVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 172 ~WQl~rLarAL~~GRRKv--sIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.=|+..|..+...-.-=. -+..||+.|||.+..|--|+.|
T Consensus 13 ~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqN 54 (66)
T 3nau_A 13 KEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSD 54 (66)
T ss_dssp HHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhccc
Confidence 458999999998877643 4678999999999999999976
No 114
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=74.29 E-value=3.9 Score=28.38 Aligned_cols=54 Identities=11% Similarity=0.203 Sum_probs=42.4
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
+..-..|+..|.+.|.-.+ ..+ ...+||..+|++...|..+.++-+.|-++..+
T Consensus 6 ~~~~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~ 59 (74)
T 1fse_A 6 FQSKPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGVKGR 59 (74)
T ss_dssp --CCCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSH
T ss_pred CCCCCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
Confidence 3445679999999999853 233 45789999999999999999998888887653
No 115
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=74.18 E-value=1.9 Score=37.78 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=24.8
Q ss_pred HhcCccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 183 KTGRRKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 183 ~~GRRKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
+.|.|+++|++||+++|+.++.|=--|.+.+
T Consensus 5 ~~~~~~~ti~diA~~agVS~~TVSr~Ln~~~ 35 (344)
T 3kjx_A 5 ADTKRPLTLRDVSEASGVSEMTVSRVLRNRG 35 (344)
T ss_dssp -----CCCHHHHHHHHCCCSHHHHHHHTTCS
T ss_pred ccCCCCCCHHHHHHHHCCCHHHHHHHHcCCC
Confidence 5688999999999999999999999999875
No 116
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=73.81 E-value=3.2 Score=30.84 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=37.2
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|-
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNR 58 (80)
T 2dms_A 13 TFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNR 58 (80)
T ss_dssp SCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHH
Confidence 56789999999999987653 236789999999999999999873
No 117
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=73.76 E-value=5.8 Score=27.55 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=25.1
Q ss_pred HHHHhcCc-cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 180 YALKTGRR-KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 180 rAL~~GRR-KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+..|.- +.++..+|++||+.+..|-.|++.
T Consensus 16 ~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 16 ESYRNDNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp HHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 34566641 223999999999999999999985
No 118
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=73.67 E-value=3.1 Score=30.19 Aligned_cols=44 Identities=27% Similarity=0.193 Sum_probs=37.0
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.+...|+..|+.++.....- ..+..||++|||.-..|--|+.|
T Consensus 12 ~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (70)
T 2e1o_A 12 VRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQN 57 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHh
Confidence 357789999999999886642 34678999999999999999976
No 119
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=73.57 E-value=3.6 Score=28.79 Aligned_cols=43 Identities=7% Similarity=-0.046 Sum_probs=35.5
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqN 55 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFIN 55 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 56788999999999987542 24678999999999999999865
No 120
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.46 E-value=3.4 Score=30.81 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=37.0
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+...|+..|+.++.....- ..+..||++|||.-..|--|+.|
T Consensus 22 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 67 (80)
T 2dmt_A 22 TVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQN 67 (80)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHH
Confidence 357889999999999986642 24678999999999999999965
No 121
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=73.24 E-value=4.9 Score=28.20 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=35.8
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 49 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQN 49 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhh
Confidence 46678999999999886542 23678999999999999999876
No 122
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=72.85 E-value=6.9 Score=24.27 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=30.7
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhh
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..++..+...+-..|.. .+ ...+||..+|++...|..|.+.-+
T Consensus 4 ~~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 35777776555555543 23 367899999999999999987544
No 123
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.52 E-value=2.9 Score=30.33 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=36.0
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (70)
T 2djn_A 13 IYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQN 57 (70)
T ss_dssp SSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 56789999999999876542 24678999999999999999976
No 124
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=72.51 E-value=1.9 Score=38.13 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=26.5
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
+..|+++++|++||+++|+.++.|=--|.+.+
T Consensus 3 ~~~~~~~~Ti~diA~~aGVS~~TVSrvLn~~~ 34 (366)
T 3h5t_A 3 LGRKQQYGTLASIAAKLGISRTTVSNAYNRPE 34 (366)
T ss_dssp ----CCTTHHHHHHHHHTSCHHHHHHHHHCGG
T ss_pred CCccCCCCCHHHHHHHhCCCHHHHHHHHCCCC
Confidence 56899999999999999999999999998865
No 125
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=72.38 E-value=3.8 Score=29.69 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=36.2
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||++|||.-..|--|+.|
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2cra_A 13 PYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQN 57 (70)
T ss_dssp CSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHh
Confidence 56788999999999887642 24678999999999999999976
No 126
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.01 E-value=3.6 Score=31.59 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=36.5
Q ss_pred hchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 170 LKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.-.+|+..|+.++.....- ..+..||..|||....|--|+.|-
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNR 64 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSER 64 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhH
Confidence 5679999999999987653 346789999999999999999874
No 127
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=71.98 E-value=2.9 Score=30.84 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.2
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
++++|++||+.+|+.++.|=.+|.+++
T Consensus 8 ~~~t~~diA~~aGVS~sTVSr~ln~~~ 34 (67)
T 2l8n_A 8 TAATMKDVALKAKVSTATVSRALMNPD 34 (67)
T ss_dssp -CCCHHHHHHHTTCCHHHHHHTTTCCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHcCCC
Confidence 358999999999999999999999875
No 128
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=71.78 E-value=7.3 Score=30.11 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=37.5
Q ss_pred ccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhh
Q 040593 270 AQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRA 320 (342)
Q Consensus 270 kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRA 320 (342)
+|++||.++-..+=..+..+.++. ..+||..+|++++.|..|.++++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 689999999866666664555544 346899999999999999998765
No 129
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=71.59 E-value=3.5 Score=36.16 Aligned_cols=49 Identities=16% Similarity=0.451 Sum_probs=41.3
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCh---hhHHhhhhhhhh
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPR---RRIVKWFEDKRA 320 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~Lpe---srVQVWFQNRRA 320 (342)
+.||+.+|..-.-.|--|+||+..+...----+...+ ++...||.|=|.
T Consensus 2 ~~Ltp~HLkKAKLMFfytRYPsS~~LK~yFpDvkFnr~~TsQLiKWFSNFRE 53 (152)
T 1mij_A 2 STLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIKFNKNNTAQLVKWFSNFRE 53 (152)
T ss_dssp CCCCHHHHHHHHHHTTTCSSCCHHHHHHHCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHhhhhheeeecCCcHHHHHHhCCchhhhhhhHHHHHHHHHhhHH
Confidence 6799999999999999999999999876655555554 688999999874
No 130
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=71.47 E-value=5.3 Score=28.93 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=36.5
Q ss_pred hhchHHHHHHHHHHHhcCc--cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRR--KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRR--KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++..... ...+..||..|||.-..|--|+.|
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqN 52 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQN 52 (68)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHH
Confidence 4667899999999998764 234678999999999999999976
No 131
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=71.27 E-value=3.4 Score=29.89 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=35.9
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 52 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKN 52 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHH
Confidence 46678999999999886642 23678999999999999999976
No 132
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=71.26 E-value=5.8 Score=30.10 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=43.2
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCCCC
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPECRK 329 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~R~ 329 (342)
..||..|.+.|.-++..- ...+||..+|++...|..+..+=+.|-++..+.-
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~ 77 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQ 77 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHH
Confidence 469999999999975443 2378999999999999999999999999887654
No 133
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=71.04 E-value=6.3 Score=27.51 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=34.9
Q ss_pred hhchHHHHHHHHHHHh---cCc--cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKT---GRR--KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~---GRR--KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|..++.. ..- ...+..||++|||.-..|--|+.|
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqN 51 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 51 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4567899999999998 432 223678999999999999999875
No 134
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=70.89 E-value=4.5 Score=28.48 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=35.8
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKN 53 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhh
Confidence 45678999999999887643 23678999999999999999875
No 135
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=70.69 E-value=4.2 Score=30.07 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=36.7
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||++|||.-..|--|+.|
T Consensus 15 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 59 (77)
T 1nk2_P 15 LFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQN 59 (77)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHH
Confidence 56789999999999987642 24678999999999999999976
No 136
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=70.65 E-value=6.2 Score=28.14 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=32.7
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
++....+.+..||+.. =++...|+.||+.|..+-.+|+..
T Consensus 18 l~~~Er~~I~~aL~~~---gn~~~aA~~LGIsr~tL~rklkk~ 57 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEY---PSTRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp CSHHHHHHHHHHHHHS---CSHHHHHHHTTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh---CCHHHHHHHhCCCHHHHHHHHHHh
Confidence 4555667788888886 278899999999999999998863
No 137
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=70.50 E-value=7.8 Score=28.04 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=35.5
Q ss_pred hhhhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 166 REVRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 166 r~~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..|..-|...|...+..+ ..+++++||+.||++++.|-..|+.
T Consensus 15 ~~~~l~~~~~~~l~~l~~~~-~~~t~~ela~~l~is~~tv~~~l~~ 59 (109)
T 2d1h_A 15 CCYKITDTDVAVLLKMVEIE-KPITSEELADIFKLSKTTVENSLKK 59 (109)
T ss_dssp HHHTCCHHHHHHHHHHHHHC-SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHHcC-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34567778888888777633 3489999999999999999887764
No 138
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=70.11 E-value=3.5 Score=31.51 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=42.6
Q ss_pred cccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 269 SAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 269 ~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
..-..||..|.++|.-.+.- | ...+||..+|++.+.|....++=+.|.||..+
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G--~----s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r 77 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKG--F----TNQEIADALHLSKRSIEYSLTSIFNKLNVGSR 77 (90)
T ss_dssp ----CCCHHHHHHHHHHHTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccccCCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 35667999999999988732 2 46788999999999999999999999998764
No 139
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=69.80 E-value=5.4 Score=30.80 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=36.4
Q ss_pred hhchHHHHHHHHHHHhcCccc--cHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKV--SVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKv--sIk~LA~EL~LDRa~VL~wLR~ 211 (342)
++...|+..|..++..-.-=. -+..||+++||.+..|--|+.|
T Consensus 9 kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqN 53 (76)
T 2ecc_A 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGD 53 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHh
Confidence 567899999999999765432 3678999999999999999976
No 140
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=69.67 E-value=6.6 Score=28.72 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=35.4
Q ss_pred hhchHHHHHHHHHHHh-cCc--cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKT-GRR--KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~-GRR--KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.. .+. ..-+..||++|||.-..|--|+.|
T Consensus 8 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqN 53 (73)
T 2hi3_A 8 GPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQ 53 (73)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5678899999999985 443 223678999999999999999976
No 141
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=69.65 E-value=6 Score=30.15 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=35.5
Q ss_pred hhhchHHHHHHHHHHHh-----cCc--cccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 168 VRLKNWQLRKLAYALKT-----GRR--KVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~-----GRR--KvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
..+...|+..|+ ++.. -+. ..-...||.+|||....|-=|+.|.
T Consensus 22 t~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNr 72 (80)
T 1wh7_A 22 TKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNN 72 (80)
T ss_dssp CCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTT
T ss_pred ccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCccccccccc
Confidence 357899999999 8887 332 2345789999999999999999875
No 142
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=69.40 E-value=4.9 Score=29.01 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=36.2
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||..|||.-..|--|+.|
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 52 (68)
T 1ftt_A 8 LFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQN 52 (68)
T ss_dssp SCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHH
Confidence 46778999999999987643 23678999999999999999976
No 143
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=69.36 E-value=0.1 Score=43.52 Aligned_cols=27 Identities=0% Similarity=-0.125 Sum_probs=21.9
Q ss_pred ccccccCCHHHHHHHHHHhhhcCCCCH
Q 040593 268 WSAQKRLKKVQVKTLEMVYRRSKRPTD 294 (342)
Q Consensus 268 w~kRTrFT~~QLetLErvF~rT~YPdv 294 (342)
.+.||.||..||+.|+..|+.++||+-
T Consensus 137 ~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 137 SGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp ----EEEECCCCEECCSSCCCCCCCCC
T ss_pred cCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 467899999999999999999999973
No 144
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=69.10 E-value=5.1 Score=28.26 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=35.9
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 53 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQN 53 (62)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHH
Confidence 46788999999999887642 23578999999999999999876
No 145
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=69.08 E-value=4.7 Score=30.01 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=36.9
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+...|+..|+.++.....- .-+..||+.|||.-..|--|+.|
T Consensus 27 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqN 72 (84)
T 2kt0_A 27 TVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQN 72 (84)
T ss_dssp SCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 357889999999999886642 23678999999999999999976
No 146
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=68.93 E-value=5.2 Score=28.41 Aligned_cols=43 Identities=16% Similarity=0.035 Sum_probs=35.9
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 53 (63)
T 2h1k_A 9 AYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQN 53 (63)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHh
Confidence 45678999999999887642 34678999999999999999875
No 147
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=68.34 E-value=4 Score=29.94 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=23.1
Q ss_pred ccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 189 VSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 189 vsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
++|++||+.+|+.++.|=.+|.+.+
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999999999865
No 148
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=68.10 E-value=5.2 Score=29.77 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=36.3
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|..++.....- ..+..||.+|||.-..|--|+.|
T Consensus 24 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 68 (81)
T 1fjl_A 24 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQN 68 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 46789999999999987642 23678999999999999999976
No 149
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=67.99 E-value=16 Score=27.22 Aligned_cols=59 Identities=7% Similarity=0.048 Sum_probs=38.4
Q ss_pred cccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCCCCccc
Q 040593 269 SAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPECRKPFQ 332 (342)
Q Consensus 269 ~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~R~~~q 332 (342)
..++.|+.++....-..|. ..+ ...+||..+|+++..|..|.+.-+..........|.+
T Consensus 18 ~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~~~~~~~~ 76 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCKNEDKLRFMSRQSATDN 76 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHHHHHhccccccCCCccc
Confidence 3567888888544444554 333 3668899999999999999866554333334444443
No 150
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=67.72 E-value=4.3 Score=30.24 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=36.4
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||++|||.-..|--|+.|
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 57 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSN 57 (80)
T ss_dssp CSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHH
Confidence 56789999999999876642 24678999999999999999976
No 151
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=67.21 E-value=5.5 Score=29.79 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=35.7
Q ss_pred hchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+...|+..|+.++...+.- .....||+.|||.-..|--|+.|
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqN 54 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQN 54 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchh
Confidence 5678999999999987753 24578999999999999999976
No 152
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=67.07 E-value=4.9 Score=28.92 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=35.9
Q ss_pred hhchHHHHHHHHHHHhcCc--cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRR--KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRR--KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++..... ...+..||..|||.-..|--|+.|
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKN 53 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4667899999999987654 234679999999999999999976
No 153
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=67.02 E-value=4.7 Score=28.88 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=35.4
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|..++.....- ..+..||++|||.-..|--|+.|
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 51 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQN 51 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHh
Confidence 45678999999999875542 24678999999999999999976
No 154
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=66.73 E-value=5.2 Score=30.29 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=35.5
Q ss_pred hhhchHHHHHHHHHHHh-c--Cccc---cHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKT-G--RRKV---SVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~-G--RRKv---sIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+...|+..|+..... | -... -+..||.+|||....|-=|+.|
T Consensus 22 t~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqN 71 (80)
T 1wh5_A 22 TKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHN 71 (80)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccc
Confidence 35789999999999987 2 2222 4568999999999999999976
No 155
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=66.72 E-value=5.3 Score=29.83 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=21.7
Q ss_pred ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 189 VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 189 vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+|..+|+++|+.++.|-.|++.
T Consensus 24 ~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 24 ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ChHHHHHHHHCcCHHHHHHHHHH
Confidence 69999999999999999999975
No 156
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=66.72 E-value=4.9 Score=29.51 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=36.3
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....- ..+..||..|||.-..|--|+.|
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 57 (73)
T 2l7z_A 13 PYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQN 57 (73)
T ss_dssp CSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 46788999999999987642 34678999999999999999976
No 157
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=66.11 E-value=2.5 Score=34.65 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=39.3
Q ss_pred hhhhhchHHHHHHHHHHHhcCccccHHHHHHHhcC-CHHHHHHHhcCCCC
Q 040593 166 REVRLKNWQLRKLAYALKTGRRKVSVKSLAAELCL-DRAVVLEMLGDPPP 214 (342)
Q Consensus 166 r~~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~L-DRa~VL~wLR~ppP 214 (342)
||.++..=....+...++.| .++..+|+..|+ .++.|..|++..|.
T Consensus 9 RPtk~t~e~~e~I~~~i~~G---~sl~~i~~~~~~ps~~T~~~W~~~~~e 55 (140)
T 4dyq_A 9 RPSDYMPEVADDICSLLSSG---ESLLKVCKRPGMPDKSTVFRWLAKHED 55 (140)
T ss_dssp -CCSCCTTHHHHHHHHHHTT---CCHHHHHTSTTCCCHHHHHHHHHHCHH
T ss_pred CCCCCCHHHHHHHHHHHHCC---CcHHHHHhcCCCCCHHHHHHHHHcCHH
Confidence 66677777778888889998 799999999999 89999999999764
No 158
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=66.03 E-value=6.8 Score=27.18 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=32.3
Q ss_pred cccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhh
Q 040593 271 QKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDK 318 (342)
Q Consensus 271 RTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNR 318 (342)
|+.|+.+.-.....++.. .++.-....++|..+|++...|..|.+.-
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 567888776666555543 33211126689999999999999996543
No 159
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=65.28 E-value=7.7 Score=27.39 Aligned_cols=50 Identities=14% Similarity=0.036 Sum_probs=40.4
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
..|+..|.+.|.-.|. .+ ...+||..+|++...|..+..+-+.|-++...
T Consensus 15 ~~L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~ 64 (79)
T 1x3u_A 15 QTLSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKSL 64 (79)
T ss_dssp HHHCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSH
T ss_pred HhCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 3588999999988542 23 34689999999999999999999999888654
No 160
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=65.07 E-value=7.6 Score=31.14 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=28.9
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
|..-+.+.| .+|..+- .+++++||++||+.++.|...|+.
T Consensus 5 ld~~~~~il-~~L~~~~-~~s~~ela~~lg~s~~tv~~~l~~ 44 (151)
T 2cyy_A 5 LDEIDKKII-KILQNDG-KAPLREISKITGLAESTIHERIRK 44 (151)
T ss_dssp CCHHHHHHH-HHHHHCT-TCCHHHHHHHHCSCHHHHHHHHHH
T ss_pred cCHHHHHHH-HHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 444455444 4565443 389999999999999999887753
No 161
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=64.43 E-value=8.9 Score=30.61 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=29.2
Q ss_pred hchHHHHHHHHHHH-hcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALK-TGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~-~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
|...+.+.|. +|. .|| +++++||+.||+.++.|...|+.
T Consensus 5 ld~~~~~iL~-~L~~~~~--~s~~ela~~lg~s~~tv~~~l~~ 44 (150)
T 2w25_A 5 LDDIDRILVR-ELAADGR--ATLSELATRAGLSVSAVQSRVRR 44 (150)
T ss_dssp CCHHHHHHHH-HHHHCTT--CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCHHHHHHHH-HHHHcCC--CCHHHHHHHHCcCHHHHHHHHHH
Confidence 4455655555 554 453 89999999999999999887763
No 162
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=64.23 E-value=1.4 Score=38.93 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
.++.|.|+++|++||+++|+.++.|=--|.+.+
T Consensus 5 ~~~~g~~~~ti~diA~~agVS~~TVSr~Ln~~~ 37 (355)
T 3e3m_A 5 SRKPGHRPVTMRDVAKAAGVSRMTVSRALKKDS 37 (355)
T ss_dssp ---------------------------------
T ss_pred CcCCCCCCCcHHHHHHHhCCCHHHHHHHHCCCC
Confidence 357899999999999999999999999998764
No 163
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=63.96 E-value=7 Score=28.84 Aligned_cols=43 Identities=14% Similarity=-0.051 Sum_probs=36.3
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|+.++.....= ..+..||+.|||.-..|--|+.|
T Consensus 19 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 63 (77)
T 1puf_A 19 PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQN 63 (77)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 57789999999999987642 23678999999999999999876
No 164
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=63.82 E-value=8.2 Score=30.75 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=26.7
Q ss_pred HHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 177 KLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 177 rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
++-.+|..+- ++++++||+.||+.++.|...|+.
T Consensus 13 ~il~~L~~~~-~~s~~ela~~lg~s~~tv~~~l~~ 46 (151)
T 2dbb_A 13 QLVKILSENS-RLTYRELADILNTTRQRIARRIDK 46 (151)
T ss_dssp HHHHHHHHCT-TCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3445666543 389999999999999999887764
No 165
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=63.32 E-value=9.6 Score=30.37 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 173 WQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 173 WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.+ +-.+|..+-| +++++||+.||+.++.|...|+.
T Consensus 6 ~d~~-il~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~ 42 (144)
T 2cfx_A 6 IDLN-IIEELKKDSR-LSMRELGRKIKLSPPSVTERVRQ 42 (144)
T ss_dssp HHHH-HHHHHHHCSC-CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHH
Confidence 3443 4445655433 89999999999999999887764
No 166
>2lmd_A Prospero homeobox protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transcription; NMR {Homo sapiens}
Probab=63.32 E-value=5.2 Score=35.69 Aligned_cols=52 Identities=19% Similarity=0.478 Sum_probs=43.6
Q ss_pred cccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCh---hhHHhhhhhhhh
Q 040593 269 SAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPR---RRIVKWFEDKRA 320 (342)
Q Consensus 269 ~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~Lpe---srVQVWFQNRRA 320 (342)
...+.||+.+|..-.-.|--|+||+..+...----+...+ ++...||.|=|.
T Consensus 12 ~~~~~Ltp~HLkKAKLMFfytRYPsS~~LK~yFpDvkFnr~~TsQLiKWFSNFRE 66 (174)
T 2lmd_A 12 AMQEGLSPNHLKKAKLMFFYTRYPSSNMLKTYFSDVKFNRCITSQLIKWFSNFRE 66 (174)
T ss_dssp CCCCCSCHHHHHHHHHHHTTCCSCHHHHHHHHTSSCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHhhhhheeeecCCcHHHHHHhCCchhhhhhhHHHHHHHHHhhHH
Confidence 4678999999999999999999999999776655555554 688999999874
No 167
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=63.24 E-value=12 Score=26.46 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=33.3
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
++......+.+||+.-. -++...|+.||+.|..+-.+|+..
T Consensus 16 l~~~E~~~i~~aL~~~~--gn~~~aA~~LGisr~tL~rklkk~ 56 (63)
T 3e7l_A 16 KKEFEKIFIEEKLREYD--YDLKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHTT--TCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC--CCHHHHHHHHCcCHHHHHHHHHHh
Confidence 55667778889997654 457899999999999999998754
No 168
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=63.22 E-value=2.6 Score=36.52 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.7
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
+.++|..||++||+.|+.+-.|.+..
T Consensus 47 ~~lTv~eIA~~LGIS~~TLyrW~k~~ 72 (155)
T 2ao9_A 47 EKRTQDEMANELGINRTTLWEWRTKN 72 (155)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence 36899999999999999999999953
No 169
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=63.08 E-value=7.3 Score=29.16 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=37.0
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+...|+..|+.++.....- ..+..||.+|||.-..|--|+.|
T Consensus 25 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 70 (81)
T 1b8i_A 25 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQN 70 (81)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHH
Confidence 367889999999999987642 23678999999999999999976
No 170
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=63.04 E-value=5.6 Score=29.38 Aligned_cols=50 Identities=6% Similarity=0.052 Sum_probs=41.4
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
..||..|.+.|.-.+. .....+||+.+|++...|..+.++-+.|-++..+
T Consensus 20 ~~Lt~~e~~vl~l~~~------g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 69 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ------GLPNKMIARRLDITESTVKVHVKHMLKKMKLKSR 69 (82)
T ss_dssp GGSCHHHHHHHHHHTT------TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 4699999999998542 2356789999999999999999998888887653
No 171
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=62.79 E-value=11 Score=27.24 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 171 KNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 171 ~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
..||++.|..-...| ..++++||+.||++++.|-..|+
T Consensus 15 ~~~~~~iL~~L~~~~--~~~~~ela~~l~is~~tvs~~l~ 52 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRR--KAPFSQIQKVLDLTPGNLDSHIR 52 (100)
T ss_dssp SHHHHHHHHHHHHHS--EEEHHHHHHHTTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcC--CcCHHHHHHHHCcCHHHHHHHHH
Confidence 568888887655555 48999999999999999987776
No 172
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=62.58 E-value=11 Score=29.67 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=34.7
Q ss_pred hhhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 167 EVRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 167 ~~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
...|..-|.+.|..-+..|...+++..||+.||++|+.|-..|+
T Consensus 21 ~~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~ 64 (123)
T 3r0a_A 21 ALNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVK 64 (123)
T ss_dssp HHTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34677778777776666665449999999999999999987775
No 173
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=61.79 E-value=6.3 Score=29.82 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=36.9
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+...|+..|+.++.....= ..+..||+.|||.-..|--|+.|
T Consensus 33 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqN 78 (88)
T 2r5y_A 33 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQN 78 (88)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHH
Confidence 367889999999999876542 24678999999999999999876
No 174
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=61.58 E-value=10 Score=30.65 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=29.2
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
|..-+.+.| .+|..+-| +++++||+.||+.++.|...|+.
T Consensus 8 ld~~~~~il-~~L~~~~~-~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 8 LDKTDIKIL-QVLQENGR-LTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp CCHHHHHHH-HHHHHCTT-CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHH-HHHHHcCC-CCHHHHHHHHCcCHHHHHHHHHH
Confidence 444555444 45654433 79999999999999999887764
No 175
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.42 E-value=7.1 Score=28.43 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 171 KNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 171 ~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
...|+..|+.++...+.- ..+..||++|||.-..|=-|+.|
T Consensus 11 ~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqN 53 (64)
T 2e19_A 11 LKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEK 53 (64)
T ss_dssp CHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhc
Confidence 467999999999876542 24678999999999999999976
No 176
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=61.38 E-value=7.9 Score=26.91 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=24.2
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.++||+.+|+.+..|-.|.++
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46789999999999999999999997
No 177
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=61.28 E-value=10 Score=27.41 Aligned_cols=37 Identities=19% Similarity=0.077 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 172 NWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 172 ~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.+|.+.| .+|..| ...++++||+.||++++.|-..|+
T Consensus 24 ~~~~~il-~~l~~~-~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 24 PKRLLIL-CMLSGS-PGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp HHHHHHH-HHHTTC-CSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred hHHHHHH-HHHHhC-CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 5777766 566554 358999999999999999987775
No 178
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=61.06 E-value=11 Score=29.32 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 174 QLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 174 Ql~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
|.+.| .+|..+-| .++++||+.||+.+..|-..|+
T Consensus 6 ~~~il-~~L~~~~~-~~~~ela~~lg~s~~tv~~~l~ 40 (141)
T 1i1g_A 6 DKIIL-EILEKDAR-TPFTEIAKKLGISETAVRKRVK 40 (141)
T ss_dssp HHHHH-HHHHHCTT-CCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHH-HHHHHcCC-CCHHHHHHHHCcCHHHHHHHHH
Confidence 44444 46765543 5999999999999999987765
No 179
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=60.98 E-value=11 Score=30.09 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=29.3
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
|...+.+.| .+|..+- .+++++||+.||+.++.|...|+.
T Consensus 6 ld~~d~~il-~~L~~~~-~~s~~ela~~lg~s~~tv~~~l~~ 45 (152)
T 2cg4_A 6 IDNLDRGIL-EALMGNA-RTAYAELAKQFGVSPETIHVRVEK 45 (152)
T ss_dssp CCHHHHHHH-HHHHHCT-TSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCHHHHHHH-HHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 444454444 5666543 389999999999999999988764
No 180
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=60.59 E-value=15 Score=25.22 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=23.4
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..+.+.||+.+|+.++.|-.|.++
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 5689999999999999999999987
No 181
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=60.18 E-value=16 Score=27.10 Aligned_cols=52 Identities=8% Similarity=0.106 Sum_probs=42.2
Q ss_pred ccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 270 AQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 270 kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
.=..|+..|.+.|.-.|.- + ...+||..+|++...|..+..+-+.|-++..+
T Consensus 26 ~l~~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 26 LYEMLTEREMEILLLIAKG--Y----SNQEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp TGGGCCSHHHHHHHHHHTT--C----CTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred HHhcCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 3456999999999885443 3 33578999999999999999999999888764
No 182
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=59.95 E-value=13 Score=27.70 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 171 KNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 171 ~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
..|+.+.|. +|..|. .++++||+.||++++.|-..|+
T Consensus 20 ~~~r~~IL~-~L~~~~--~~~~ela~~l~is~~tv~~~l~ 56 (114)
T 2oqg_A 20 DETRWEILT-ELGRAD--QSASSLATRLPVSRQAIAKHLN 56 (114)
T ss_dssp CHHHHHHHH-HHHHSC--BCHHHHHHHSSSCHHHHHHHHH
T ss_pred ChHHHHHHH-HHHcCC--CCHHHHHHHHCcCHHHHHHHHH
Confidence 357777776 466654 8999999999999999988876
No 183
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=59.79 E-value=11 Score=31.41 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=28.9
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
|..-+.+ +-.+|..+- ++++++||+.||+.++.|...|+.
T Consensus 15 ld~~d~~-IL~~L~~~~-~~s~~eLA~~lglS~~tv~~~l~~ 54 (171)
T 2ia0_A 15 LDDLDRN-ILRLLKKDA-RLTISELSEQLKKPESTIHFRIKK 54 (171)
T ss_dssp CCHHHHH-HHHHHHHCT-TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4444443 444565443 389999999999999999988764
No 184
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=59.71 E-value=2.6 Score=31.90 Aligned_cols=29 Identities=10% Similarity=0.370 Sum_probs=25.0
Q ss_pred HHHHHHHhCCChhhHHhhhhhhhhccCCCCCCC
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKRAEEGVPECRK 329 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~R~ 329 (342)
.++||+.+|++...|-.|..+ .+||.+|.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g----~~iP~~~~ 41 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA----GEIPPLRQ 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH----TSCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC----CCCCHHHH
Confidence 789999999999999999965 47887664
No 185
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=59.61 E-value=16 Score=28.03 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=34.9
Q ss_pred hhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 36 ~~l~~~~~~iL~~l~~~~--~~t~~ela~~l~~~~~tvs~~l~~ 77 (148)
T 3nrv_A 36 FGIGMTEWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKK 77 (148)
T ss_dssp GTCCHHHHHHHHHHHHSS--SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCC--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 457777888887777777 899999999999999999887764
No 186
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=59.53 E-value=14 Score=31.23 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCCCC
Q 040593 175 LRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDPPP 214 (342)
Q Consensus 175 l~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ppP 214 (342)
+++.-.-+..| .++..||+.||+.|..|-.+|+++..
T Consensus 165 v~~i~~~~~~G---~s~~~Ia~~l~is~~tv~r~l~~~~~ 201 (209)
T 2r0q_C 165 YHRVVEMLEEG---QAISKIAKEVNITRQTVYRIKHDNGL 201 (209)
T ss_dssp HHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHTTCC-
T ss_pred HHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHhcccc
Confidence 44555556667 69999999999999999999999763
No 187
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=59.50 E-value=15 Score=28.11 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=27.8
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
.+.|=.+++|.+||++.|+.|+.+-..+.+-.
T Consensus 23 ~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 54 (195)
T 3ppb_A 23 VSQGFHGTSTATIAREAGVATGTLFHHFPSKE 54 (195)
T ss_dssp HHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HhcCcccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 45699999999999999999999988887643
No 188
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=59.36 E-value=8.4 Score=30.26 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 175 LRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 175 l~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.+++-..|+..- +++++||++||+.|..|-..|.
T Consensus 19 ~~~IL~lL~~~g--~sa~eLAk~LgiSk~aVr~~L~ 52 (82)
T 1oyi_A 19 VCEAIKTIGIEG--ATAAQLTRQLNMEKREVNKALY 52 (82)
T ss_dssp HHHHHHHHSSST--EEHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHH
Confidence 344555666433 9999999999999999987775
No 189
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=59.32 E-value=17 Score=27.41 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=34.2
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-...|...++++.||+.||++++.|-..|+.
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~ 73 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQR 73 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHH
Confidence 4566677777776666655799999999999999998877753
No 190
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=59.29 E-value=8.8 Score=32.82 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=43.1
Q ss_pred cccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 271 QKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 271 RTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
...||+.|.++|.-+++-- .-.+||+.+|+++..|....+|-+.|-||..+
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~ 223 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLDAESV 223 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCH
Confidence 4569999999998865332 34788999999999999999999999999765
No 191
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=59.24 E-value=11 Score=28.02 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=34.7
Q ss_pred hhhhchHHHHHHHHHHHhc--CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 167 EVRLKNWQLRKLAYALKTG--RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 167 ~~~L~~WQl~rLarAL~~G--RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..-|...+...|...+..+ -..+++++||+.||++++.|-.+|+.
T Consensus 7 k~~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 53 (95)
T 2qvo_A 7 KLLFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKK 53 (95)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred HcCCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3467788888888776542 23489999999999999999877653
No 192
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=59.02 E-value=2.2 Score=37.28 Aligned_cols=121 Identities=14% Similarity=0.093 Sum_probs=35.4
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC-CCC---chhhhcccCCCCCCCcccccccCCCcccccccccccCCCCCCCCCCC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD-PPP---NLLMLSATLPDKPTPTVLVNEVKHSEPIVAETTVHAVEPKSKVEEPV 261 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~-ppP---~ll~mSa~lpdE~~~~~~~~E~~~~~~v~~ets~~a~e~~~~~~lP~ 261 (342)
.+..+.+.||+.+|+.++.|=.|.++ ..| .+..++..+.-.+.-=....... ..+.. .+.+ +.
T Consensus 41 ~~g~t~~~la~~~g~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~~l~~~~~~~--~~~~~-------~~~~----~~ 107 (311)
T 4ich_A 41 SRPGAQREFAAAIGLDESKLSKSLNGTRRFSPHELVRIAEHSGVTVNWLINGRDDA--RTVAA-------VPAP----TA 107 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChhhhhcCCCcc--ccccC-------CCCc----cc
Confidence 35678999999999999999999987 233 33334433321110000000000 00000 0000 00
Q ss_pred ccccccccccccCCHHH-HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhh
Q 040593 262 HDRQHRWSAQKRLKKVQ-VKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRA 320 (342)
Q Consensus 262 ~~~q~~w~kRTrFT~~Q-LetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRA 320 (342)
..+......+..-+..+ ++.....|...-|-.. ....||+..|++...|--.|.||-.
T Consensus 108 ~~~~~~~~~~~~~~r~~il~aa~~l~~~~G~~~~-T~~~IA~~AGvs~gtlY~yF~sKe~ 166 (311)
T 4ich_A 108 RSRSAPAGEPQSEARRRILETAWRLIARRGYHNV-RIHDIASELGTSNATIHYHFPSKKD 166 (311)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred ccCCCCCccchhhHHHHHHHHHHHHHHHcCCccC-CHHHHHHHhCCCchhHHHhCCCHHH
Confidence 00011112222223333 4566777888777654 4577999999999999999999853
No 193
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=58.84 E-value=6.2 Score=27.90 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=33.5
Q ss_pred hhchHHHHHHHHHHH---hcCc--cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALK---TGRR--KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~---~GRR--KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|...+. .... ......||++|||.-..|--|+.|
T Consensus 9 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqN 56 (64)
T 1du6_A 9 HMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 56 (64)
T ss_dssp SSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 456789999999994 3322 234578999999999999999876
No 194
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=58.71 E-value=15 Score=28.31 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=33.8
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.++....+.+..||+.-. -++...|+.||+.|..+..+||..
T Consensus 37 ~l~~~Er~~I~~aL~~~~--GN~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 37 SADRVRWEHIQRIYEMCD--RNVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp CHHHHHHHHHHHHHHHTT--SCHHHHHHHHTSCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHhC--CCHHHHHHHhCCCHHHHHHHHHHh
Confidence 456667778889998743 357899999999999999998864
No 195
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=58.45 E-value=11 Score=31.18 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=43.1
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
..||..+.+.|+-..+. ..+++||+.++++++.|.+-.+|=|.|-++.++
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~KL~~~~r 197 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 197 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCH
Confidence 35899999999877654 346889999999999999999999999999875
No 196
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=57.67 E-value=11 Score=25.48 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=23.7
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.+.||+.+|+.++.|-.|.++
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 35689999999999999999999987
No 197
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=57.62 E-value=12 Score=29.81 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=26.8
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.| ..++|.+||++.|+.++.|...+.+
T Consensus 33 f~~~G-~~~s~~~IA~~aGvs~~tlY~~F~s 62 (215)
T 2hku_A 33 FLEHG-EGVPITQICAAAGAHPNQVTYYYGS 62 (215)
T ss_dssp HHHHC-TTSCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHhC-CCcCHHHHHHHhCCCHHHHHHHcCC
Confidence 34689 9999999999999999999988865
No 198
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=57.62 E-value=19 Score=24.47 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=23.4
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..+.++||+.+|+.++.|-.|.++
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5689999999999999999999987
No 199
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=57.44 E-value=18 Score=25.76 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=28.2
Q ss_pred HHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 177 KLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 177 rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.|...|+.-|...+.++||+.+|+.++.|-.|.++-
T Consensus 16 ~~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~g~ 51 (86)
T 2ofy_A 16 RLGELLRSARGDMSMVTVAFDAGISVETLRKIETGR 51 (86)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 345555555544499999999999999999999873
No 200
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=56.65 E-value=13 Score=24.55 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=23.3
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..+.++||+.+|+.++.|-.|.++
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5689999999999999999999987
No 201
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=56.30 E-value=16 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=24.1
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.+.||+.+|+.++.|-.|.++
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 46789999999999999999999987
No 202
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=55.93 E-value=11 Score=29.34 Aligned_cols=38 Identities=34% Similarity=0.247 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 171 KNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 171 ~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..|+++.|. +|..|. .++++||+.||+.++.|-..|+.
T Consensus 20 ~~~r~~IL~-~L~~~~--~~~~eLa~~lgis~stvs~~L~~ 57 (118)
T 2jsc_A 20 DPTRCRILV-ALLDGV--CYPGQLAAHLGLTRSNVSNHLSC 57 (118)
T ss_dssp SHHHHHHHH-HHHTTC--CSTTTHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHcCC--CCHHHHHHHHCcCHHHHHHHHHH
Confidence 467777776 577664 78899999999999999776653
No 203
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=55.91 E-value=9 Score=29.52 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=36.9
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+...|+..|+.++.....= ..+..||..|||.-..|--|+.|
T Consensus 39 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 84 (97)
T 1b72_A 39 TNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQN 84 (97)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHH
Confidence 368899999999999876542 24678999999999999999976
No 204
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=55.73 E-value=20 Score=27.12 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=37.1
Q ss_pred hhhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 167 EVRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 167 ~~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..|..-|...|..-...|...+++++||+.||++++.|-..|+.
T Consensus 26 ~~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 26 QFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp GGTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 345667788888887777777899999999999999999887764
No 205
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=55.45 E-value=14 Score=27.99 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 175 LRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 175 l~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
++.|..-++.|.+ +++..||.+||+.|..|-.-|+
T Consensus 21 l~Il~~l~~~g~~-~s~~eLa~~lgvs~~tV~~~L~ 55 (110)
T 1q1h_A 21 IDVLRILLDKGTE-MTDEEIANQLNIKVNDVRKKLN 55 (110)
T ss_dssp HHHHHHHHHHCSC-BCHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHCcCHHHHHHHHH
Confidence 3445544567855 8999999999999999987775
No 206
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=55.43 E-value=11 Score=27.03 Aligned_cols=32 Identities=13% Similarity=0.247 Sum_probs=26.5
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC--CCCchh
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD--PPPNLL 217 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~--ppP~ll 217 (342)
++..+.+.||+.+|+.++.|-.|.++ ..|.+.
T Consensus 21 ~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~ 54 (78)
T 3qq6_A 21 EKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQ 54 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHH
Confidence 36789999999999999999999988 345433
No 207
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=55.22 E-value=12 Score=28.21 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=37.2
Q ss_pred hhhhhchHHHHHHHHHHHh---cCc--cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 166 REVRLKNWQLRKLAYALKT---GRR--KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 166 r~~~L~~WQl~rLarAL~~---GRR--KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+...+...|+..|...+.. ... ......||+.|||....|--|+.|
T Consensus 30 ~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqN 80 (87)
T 1mnm_C 30 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 80 (87)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3447899999999999998 332 224568999999999999999865
No 208
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=54.64 E-value=9 Score=27.81 Aligned_cols=43 Identities=16% Similarity=-0.018 Sum_probs=34.7
Q ss_pred hhchHHHHHHHHHHHh---cCc--cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKT---GRR--KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~---GRR--KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|...+.. ... ......||..|||.-..|--|+.|
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqN 60 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFIN 60 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHH
Confidence 5778999999999975 221 234568999999999999999876
No 209
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=54.51 E-value=19 Score=26.13 Aligned_cols=33 Identities=12% Similarity=-0.061 Sum_probs=24.9
Q ss_pred HHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 178 LAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 178 LarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+-..|... ..+++++||+.||+.+..|-..|+.
T Consensus 5 Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 5 ILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp HHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34455442 2499999999999999999877753
No 210
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=54.36 E-value=9.7 Score=28.80 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=21.7
Q ss_pred ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 189 VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 189 vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+|..+|++||+.++.|-.|++.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHH
Confidence 69999999999999999999986
No 211
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=54.05 E-value=4 Score=36.37 Aligned_cols=8 Identities=0% Similarity=0.268 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 040593 89 FEALFSLL 96 (342)
Q Consensus 89 ~E~LF~~L 96 (342)
++.++..|
T Consensus 322 ~~~l~~~l 329 (386)
T 2ca6_A 322 VDEIREVF 329 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33343333
No 212
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=54.03 E-value=16 Score=30.55 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=29.6
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-+.+.| ++|...- ++++++||+.||+.+..|...|+.
T Consensus 24 ~ld~~d~~IL-~~L~~~~-~~s~~eLA~~lglS~~tv~~rl~~ 64 (171)
T 2e1c_A 24 PLDEIDKKII-KILQNDG-KAPLREISKITGLAESTIHERIRK 64 (171)
T ss_dssp CCCHHHHHHH-HHHHHCT-TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHH-HHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4555555444 4555432 389999999999999999887753
No 213
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=53.88 E-value=17 Score=27.22 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=25.3
Q ss_pred HHHHHHHhcC--ccccHHHHHHHhcCCHHHHHHHhc
Q 040593 177 KLAYALKTGR--RKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 177 rLarAL~~GR--RKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
++-.+|..-- ..+++++||+.||+++..|=..|.
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~ 53 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 53 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3434444333 468999999999999999987765
No 214
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=53.59 E-value=18 Score=30.39 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 174 QLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 174 Ql~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
...++-..|....|.+++++||++||+.+..|-.-|+
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3455667787644569999999999999999966554
No 215
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=53.58 E-value=22 Score=26.35 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=32.8
Q ss_pred cccCCHHHHHHHHHHhhhc-CCCCHHHHHHHHHHhCCChhhHHhhhhhhhh
Q 040593 271 QKRLKKVQVKTLEMVYRRS-KRPTDAMISSIVQVTNLPRRRIVKWFEDKRA 320 (342)
Q Consensus 271 RTrFT~~QLetLErvF~rT-~YPdv~~RE~LA~~t~LpesrVQVWFQNRRA 320 (342)
|+.||.++-...=..|... .+ ...+||..+|++...|..|.+.-+.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 5678887765544444332 23 4678999999999999999876554
No 216
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=53.57 E-value=20 Score=28.25 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=31.2
Q ss_pred HHHHHHHHHH----hcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 174 QLRKLAYALK----TGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 174 Ql~rLarAL~----~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
+.+.|..|+. .|=.+++|.+||++.|+.++.|-..+++-
T Consensus 19 r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 61 (218)
T 3gzi_A 19 RDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSK 61 (218)
T ss_dssp HHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 3445555554 59999999999999999999998888663
No 217
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=53.16 E-value=20 Score=24.47 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=23.3
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..+.+.||+.+|+.++.|-.|.++
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5689999999999999999999987
No 218
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=53.10 E-value=18 Score=27.81 Aligned_cols=31 Identities=6% Similarity=0.104 Sum_probs=24.8
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcCCCC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGDPPP 214 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ppP 214 (342)
.+.|. .++..||++||+.++.|-.|+++...
T Consensus 21 ~~~g~--~~~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 21 EENPD--LRKGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp HHCTT--SCHHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred HHCCC--CcHHHHHHHhCCCHHHHHHHHhchhh
Confidence 35563 55669999999999999999998543
No 219
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=53.08 E-value=10 Score=27.57 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=33.9
Q ss_pred hhchHHHHHHHHHHH---hcCc--cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALK---TGRR--KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~---~GRR--KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|...+. ...- ......||+.|||.-..|--|+.|
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqN 54 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 54 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 466789999999994 3222 234678999999999999999976
No 220
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=51.42 E-value=21 Score=26.43 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 171 KNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 171 ~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
..++++.| .+| .| ..++.+||+.||+.++.|-..|+
T Consensus 30 ~~~r~~Il-~~L-~~--~~~~~eLa~~l~is~~tv~~~L~ 65 (96)
T 1y0u_A 30 NPVRRKIL-RML-DK--GRSEEEIMQTLSLSKKQLDYHLK 65 (96)
T ss_dssp CHHHHHHH-HHH-HT--TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHH-HHH-cC--CCCHHHHHHHHCcCHHHHHHHHH
Confidence 34555544 466 55 48999999999999999977665
No 221
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=51.12 E-value=18 Score=27.52 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=26.8
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.|+.+-..+.+
T Consensus 22 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (188)
T 3qkx_A 22 AREGLNQLSMLKLAKEANVAAGTIYLYFKN 51 (188)
T ss_dssp HHSCSTTCCHHHHHHHHTCCHHHHHHHSSS
T ss_pred HhcCcccCCHHHHHHHhCCCcchHHHHcCC
Confidence 367999999999999999999999887765
No 222
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=51.11 E-value=8.3 Score=26.04 Aligned_cols=44 Identities=7% Similarity=0.039 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 278 QVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 278 QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
|.+.|.-.+.- + ...+||..+|+++..|..+.++=+.|-++..+
T Consensus 3 e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~ 46 (61)
T 2jpc_A 3 ERQVLKLIDEG--Y----TNHGISEKLHISIKTVETHRMNMMRKLQVHKV 46 (61)
T ss_dssp HHHHHHHHHTS--C----CSHHHHHHTCSCHHHHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHcC--C----CHHHHHHHhCCCHHHHHHHHHHHHHHHCCCCH
Confidence 45566553332 2 23688999999999999999999999888654
No 223
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=50.91 E-value=14 Score=29.21 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 174 QLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 174 Ql~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.+.| ++|..+- .+++++||+.||+.++.|...|+.
T Consensus 5 ~~~il-~~L~~~~-~~~~~ela~~lg~s~~tv~~~l~~ 40 (150)
T 2pn6_A 5 DLRIL-KILQYNA-KYSLDEIAREIRIPKATLSYRIKK 40 (150)
T ss_dssp HHHHH-HHHTTCT-TSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHH-HHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34444 4665433 489999999999999999887763
No 224
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=50.62 E-value=12 Score=28.55 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=31.0
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-...| +++++||+.||++++.|-..|+.
T Consensus 35 ~lt~~~~~iL~~l~~~~---~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 35 ALTNTQEHILMLLSEES---LTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCCHHHHHHHHHHTTCC---CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC---CCHHHHHHHHCCCHHHHHHHHHH
Confidence 46666777776444444 99999999999999999887763
No 225
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=50.51 E-value=12 Score=28.77 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=37.1
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+...|+..|+.++.....= .-+..||..|||.-..|--|+.|
T Consensus 22 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 67 (93)
T 3a01_A 22 TSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQN 67 (93)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHh
Confidence 357889999999999987653 23578999999999999999976
No 226
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=50.47 E-value=15 Score=27.16 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 171 KNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 171 ~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
..|+++.| ..|.. ...++.+||+.||+.++.|-.-|+
T Consensus 22 ~~~r~~Il-~~L~~--~~~~~~ela~~l~is~~tvs~~L~ 58 (98)
T 3jth_A 22 NERRLQIL-CMLHN--QELSVGELCAKLQLSQSALSQHLA 58 (98)
T ss_dssp SHHHHHHH-HHTTT--SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHH-HHHhc--CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 35777666 45655 468999999999999999976665
No 227
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=50.43 E-value=10 Score=25.20 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998765
No 228
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=50.23 E-value=20 Score=27.55 Aligned_cols=34 Identities=6% Similarity=0.018 Sum_probs=28.9
Q ss_pred HHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 179 AYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 179 arAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
..-.+.|=.+++|.+||++.|+.|+.+-..+++-
T Consensus 13 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 46 (194)
T 3bqz_B 13 ELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTK 46 (194)
T ss_dssp HHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSSH
T ss_pred HHHHHcCCccCCHHHHHHHhCCCchhHHHhCCCH
Confidence 3345689999999999999999999998887763
No 229
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=49.81 E-value=25 Score=24.70 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=23.7
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
+..+.++||+.+|+.++.|-.|.++.
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 56899999999999999999999873
No 230
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=49.77 E-value=15 Score=24.56 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=23.5
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..+.++||+.+|+.++.|-.|.++
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5789999999999999999999987
No 231
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=49.41 E-value=16 Score=28.74 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=23.1
Q ss_pred ccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 189 VSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 189 vsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
++|++||+.+|+..+.|--+|.++
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCC
Confidence 999999999999999999999885
No 232
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=49.25 E-value=19 Score=24.64 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=23.3
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..+.++||+.+|+.++.|-.|.++
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5689999999999999999999987
No 233
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=49.11 E-value=21 Score=25.25 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=24.0
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
++..+.+.||+.+|+.++.|-.|.++
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999999987
No 234
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=48.89 E-value=21 Score=27.57 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=27.0
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.|+.|--.+.+
T Consensus 31 ~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 60 (206)
T 3kz9_A 31 ARRGIGRGGHADIAEIAQVSVATVFNYFPT 60 (206)
T ss_dssp HHSCCSSCCHHHHHHHHTSCHHHHHHHCCS
T ss_pred HhcCcccccHHHHHHHhCCCHHHHHHHcCC
Confidence 456999999999999999999999888776
No 235
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=48.83 E-value=22 Score=26.59 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=35.2
Q ss_pred hhchHHHHHHHHHHHh---cCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKT---GRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~---GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|+..|...+.. ...= .....||..|||.-..|--|+.|
T Consensus 8 rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqN 55 (83)
T 1le8_B 8 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAA 55 (83)
T ss_dssp CCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHH
Confidence 3678899999999987 4332 34578999999999999999966
No 236
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=48.76 E-value=29 Score=26.52 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=34.9
Q ss_pred hhhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 167 EVRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 167 ~~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..|..-|...|..-...|. +++++||..||++++.|-..|+.
T Consensus 26 ~~~lt~~q~~iL~~l~~~~~--~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 26 QQDLNYNLFAVLYTLATEGS--RTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp TTTCCHHHHHHHHHHHHHCS--BCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHCCC--CCHHHHHHHHCCCHHHHHHHHHH
Confidence 34567778888877777774 99999999999999999887753
No 237
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=48.67 E-value=21 Score=27.71 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=27.2
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.++.+-..+.+
T Consensus 28 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (220)
T 3lhq_A 28 SQQGVSATSLAEIANAAGVTRGAIYWHFKN 57 (220)
T ss_dssp HHHCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHcCcccCCHHHHHHHhCCCceeehhhcCC
Confidence 468999999999999999999999888766
No 238
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=48.61 E-value=11 Score=25.12 Aligned_cols=23 Identities=9% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 57899999999999999998864
No 239
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=48.43 E-value=23 Score=25.42 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.8
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.+.||+.+|+.++.|-.|.++
T Consensus 28 ~~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 28 ELGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999999987
No 240
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=48.42 E-value=32 Score=26.76 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=33.3
Q ss_pred hhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 40 ~~lt~~~~~iL~~l~~~~--~~t~~ela~~l~is~~tvs~~l~~ 81 (154)
T 2eth_A 40 SDMKTTELYAFLYVALFG--PKKMKEIAEFLSTTKSNVTNVVDS 81 (154)
T ss_dssp HHSBHHHHHHHHHHHHHC--CBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcC--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 356777777777666666 699999999999999998877753
No 241
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=48.37 E-value=17 Score=29.71 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 176 RKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 176 ~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+++-++|..+-| +|+++||+.|||.+..|..-|+.
T Consensus 6 ~~il~~L~~~~~-~s~~~la~~lg~s~~tv~~rl~~ 40 (162)
T 3i4p_A 6 RKILRILQEDST-LAVADLAKKVGLSTTPCWRRIQK 40 (162)
T ss_dssp HHHHHHHTTCSC-SCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHCcCHHHHHHHHHH
Confidence 356667765433 59999999999999999887764
No 242
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=48.36 E-value=21 Score=27.83 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=27.2
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+|+|.+||++.|+.|+.+-..+++
T Consensus 28 ~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 57 (212)
T 3knw_A 28 LRKGFVGVGLQEILKTSGVPKGSFYHYFES 57 (212)
T ss_dssp HHHCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHcCCccCCHHHHHHHhCCChHHHHHHCCC
Confidence 468999999999999999999999888775
No 243
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=48.16 E-value=17 Score=28.47 Aligned_cols=44 Identities=18% Similarity=0.109 Sum_probs=36.3
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.....|+..|+.+....+-= .-...||++|||....|--|+.|-
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNR 62 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEK 62 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeeccccc
Confidence 45678999999999886643 335689999999999999999884
No 244
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=47.96 E-value=17 Score=27.73 Aligned_cols=37 Identities=8% Similarity=0.102 Sum_probs=28.4
Q ss_pred HHHHHHHHH----hcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 175 LRKLAYALK----TGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 175 l~rLarAL~----~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|..|++ .|=.+++|.+||++.|+.|+.+-..+++
T Consensus 15 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 55 (177)
T 3kkc_A 15 VAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYES 55 (177)
T ss_dssp HHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSS
T ss_pred HHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHHHcCC
Confidence 344555543 5999999999999999999987665544
No 245
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=47.88 E-value=19 Score=23.92 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=23.3
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..+.++||+.+|+.++.|-.|.++
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 5689999999999999999999987
No 246
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=47.84 E-value=29 Score=26.00 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=30.7
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 36 l~~~~~~iL~~l~~~~--~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 36 LTPTQWAALVRLGETG--PCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp CCHHHHHHHHHHHHHS--SBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4445666666555566 799999999999999999887763
No 247
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=47.83 E-value=32 Score=24.17 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=24.0
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.+.||+.+|+.++.|-.|.++
T Consensus 22 ~~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 22 EKGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 36789999999999999999999988
No 248
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=47.69 E-value=22 Score=26.06 Aligned_cols=27 Identities=4% Similarity=0.016 Sum_probs=24.4
Q ss_pred cCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 185 GRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 185 GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+..+.++||+.+|+.++.|-.|.++
T Consensus 19 ~~~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 19 AKSEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp TTSSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 346789999999999999999999987
No 249
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=47.64 E-value=23 Score=26.73 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 172 NWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 172 ~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|+++.|. +|..| ..++++||+.||+.++.|-..|+
T Consensus 26 ~~r~~IL~-~L~~~--~~~~~ela~~l~is~stvs~~L~ 61 (106)
T 1r1u_A 26 YNRIRIME-LLSVS--EASVGHISHQLNLSQSNVSHQLK 61 (106)
T ss_dssp HHHHHHHH-HHHHC--CBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHH-HHHhC--CCCHHHHHHHHCcCHHHHHHHHH
Confidence 57777665 56644 47999999999999999977665
No 250
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=47.60 E-value=21 Score=27.22 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=28.0
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
-.+.|=.+++|.+||++.|+.|+.+-..+.+-
T Consensus 21 ~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 52 (194)
T 2g7s_A 21 IIRGGYNSFSYADISQVVGIRNASIHHHFPSK 52 (194)
T ss_dssp HHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSH
T ss_pred HHHcCcccCCHHHHHHHhCCCchHHHHHcCCH
Confidence 34589999999999999999999998887763
No 251
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=47.45 E-value=28 Score=26.63 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=31.3
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 37 ~lt~~~~~iL~~l~~~~--~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 37 GVTVGQRAILEGLSLTP--GATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp TCCHHHHHHHHHHHHST--TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45566677776555555 689999999999999998877763
No 252
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=47.35 E-value=27 Score=26.40 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=31.3
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
++......|.+||+.-.- ++...|+.||+.|..+..+|+.
T Consensus 48 l~~~E~~~i~~aL~~~~g--n~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 48 QPELERTLLTTALRHTQG--HKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTT--CTTHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC--CHHHHHHHHCcCHHHHHHHHHH
Confidence 455667788889987433 5678999999999999888763
No 253
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=47.32 E-value=22 Score=27.75 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=27.8
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
.+.|=..++|.+||++.|+.|+.+-..+.+-.
T Consensus 45 ~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 45 REKGYYATSLDDIADRIGFTKPAIYYYFKSKE 76 (218)
T ss_dssp HHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHcCcccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 35699999999999999999999988877643
No 254
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=47.18 E-value=22 Score=24.47 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=24.3
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.+..+.+.||+.+|+.++.|-.|.++.
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~g~ 44 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFEGR 44 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHCTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 356899999999999999999999884
No 255
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=47.17 E-value=12 Score=25.30 Aligned_cols=24 Identities=4% Similarity=-0.018 Sum_probs=21.5
Q ss_pred HHHHHHHhCCChhhHHhhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKRA 320 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRRA 320 (342)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 578999999999999999998764
No 256
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=46.96 E-value=23 Score=31.74 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=34.0
Q ss_pred hhhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 167 EVRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 167 ~~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 147 ~~~L~~~~~~IL~~L~~~~--~~s~~eLA~~lglsksTv~r~L~~ 189 (244)
T 2wte_A 147 MRDYSREEMKLLNVLYETK--GTGITELAKMLDKSEKTLINKIAE 189 (244)
T ss_dssp HSCCCHHHHHHHHHHHHHT--CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3357778888887644555 489999999999999999887753
No 257
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=46.89 E-value=27 Score=26.68 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=32.3
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|...|...|..-...|. ++++||..||++++.|-..|+
T Consensus 34 ~lt~~~~~iL~~l~~~~~---~~~~la~~l~~~~~tvs~~l~ 72 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR---SMVYLANRYFVTQSAITAAVD 72 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE---EHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCC---CHHHHHHHHCCChhHHHHHHH
Confidence 567778888877766665 999999999999999988775
No 258
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=46.61 E-value=25 Score=24.14 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=29.7
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|..-|.+.|.. +..|. +++++|..||+....|-.+++
T Consensus 11 ~L~~~e~~il~~-~~~g~---s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 11 LLTKREREVFEL-LVQDK---TTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp CCCHHHHHHHHH-HTTTC---CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHcCC---CHHHHHHHHCCCHHHHHHHHH
Confidence 466667777766 65564 999999999999999877665
No 259
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=46.57 E-value=24 Score=27.26 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=27.0
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.+.|=.+++|.+||++.|+.|+.+-..+.+-
T Consensus 28 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 58 (203)
T 3f1b_A 28 SDRGFHETSMDAIAAKAEISKPMLYLYYGSK 58 (203)
T ss_dssp HHHCTTTCCHHHHHHHTTSCHHHHHHHCCSH
T ss_pred HHcCcccccHHHHHHHhCCchHHHHHHhCCH
Confidence 3569999999999999999999998887653
No 260
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=46.50 E-value=17 Score=30.48 Aligned_cols=44 Identities=9% Similarity=0.189 Sum_probs=37.2
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+...|+..|+.++.....- .-+..||++|||.-..|--|+.|
T Consensus 106 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 151 (160)
T 1e3o_C 106 TSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSN 151 (160)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHH
Confidence 357899999999999986642 34678999999999999999976
No 261
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=46.48 E-value=12 Score=31.91 Aligned_cols=51 Identities=10% Similarity=0.052 Sum_probs=43.1
Q ss_pred cccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 271 QKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 271 RTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
...||..|.++|.-+++ ...-.+||+.+|+++..|....+|-+.|-||.++
T Consensus 171 ~~~Lt~~e~~vl~~~~~------g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~ 221 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV------GKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSK 221 (234)
T ss_dssp CCCCCHHHHHHHHHHTT------TCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSH
T ss_pred CCCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCH
Confidence 45799999999988643 2345788999999999999999999999999765
No 262
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=46.48 E-value=26 Score=26.09 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHHhcCccc---cHHHHHHHhcCCHHHHHHHhcC
Q 040593 171 KNWQLRKLAYALKTGRRKV---SVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 171 ~~WQl~rLarAL~~GRRKv---sIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.=|+..|+.++..--+-. -+..||+.|||.-..|=-|++|
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqN 51 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQ 51 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3457899999995433322 3789999999999999999976
No 263
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=46.32 E-value=19 Score=28.10 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=20.4
Q ss_pred hcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 184 TGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 184 ~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|=.+|+|.+||++.|+.|+.+-..+++
T Consensus 41 ~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 68 (212)
T 3nxc_A 41 DGSQRITTAKLAASVGVSEAALYRHFPS 68 (212)
T ss_dssp -----CCHHHHHHHTTSCHHHHHTTCSS
T ss_pred CChhhcCHHHHHHHhCCChhHHHHHCCC
Confidence 3778999999999999999988766654
No 264
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=46.27 E-value=27 Score=27.08 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 174 QLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 174 Ql~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.++.|...+..+. .+++++||+.||++++.|-..|+.
T Consensus 9 ~L~~i~~l~~~~~-~~~~~ela~~l~vs~~tvs~~l~~ 45 (142)
T 1on2_A 9 YIEQIYMLIEEKG-YARVSDIAEALAVHPSSVTKMVQK 45 (142)
T ss_dssp HHHHHHHHHHHHS-SCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-CCCHHHHHHHhCCCHHHHHHHHHH
Confidence 3445555554433 499999999999999999887763
No 265
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=46.18 E-value=24 Score=27.52 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=27.0
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.++.+-..+++
T Consensus 32 ~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 61 (212)
T 1pb6_A 32 SQFGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHCTTTCCHHHHHHHTTSCHHHHHHHSSS
T ss_pred HHcCcchhhHHHHHHHHCCChhHHHHhCCC
Confidence 456999999999999999999999888776
No 266
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=46.01 E-value=13 Score=26.06 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.0
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.+..+.+.||+.+|+.++.|-.|.++-
T Consensus 13 ~~glsq~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 13 RLSLTAKSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHTCC
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 357899999999999999999999873
No 267
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=45.64 E-value=13 Score=33.20 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=25.2
Q ss_pred HHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 178 LAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 178 LarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
+-.+|....+-.++++||+.|||+++.|.-+|+
T Consensus 35 IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~ 67 (275)
T 3mq0_A 35 ILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLA 67 (275)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHH
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344566667789999999999999999988774
No 268
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=45.43 E-value=28 Score=27.14 Aligned_cols=38 Identities=18% Similarity=0.056 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHH-hcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 171 KNWQLRKLAYALK-TGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 171 ~~WQl~rLarAL~-~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..|+++.|. .|. .| ..++++||+.||+.++.|-..|+.
T Consensus 41 ~~~rl~IL~-~L~~~~--~~s~~eLa~~l~is~stvs~~L~~ 79 (122)
T 1u2w_A 41 DENRAKITY-ALCQDE--ELCVCDIANILGVTIANASHHLRT 79 (122)
T ss_dssp SHHHHHHHH-HHHHSS--CEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHCC--CcCHHHHHHHHCcCHHHHHHHHHH
Confidence 456776665 455 44 489999999999999999877763
No 269
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=45.41 E-value=19 Score=25.85 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=39.7
Q ss_pred cccCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCChhhHHhhhhh
Q 040593 271 QKRLKKVQVKTLEMVYRR-----SKRPTDAMISSIVQVTNLPRRRIVKWFED 317 (342)
Q Consensus 271 RTrFT~~QLetLErvF~r-----T~YPdv~~RE~LA~~t~LpesrVQVWFQN 317 (342)
-..|+..+++.|..+|.. +-+-+......+...+|++...|..+|+.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 69 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQR 69 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 356889999999999964 67888888888888999999999999974
No 270
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=45.36 E-value=23 Score=28.02 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=25.8
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|= +|+|.+||++.|+.++.+-..+++
T Consensus 27 ~~~G~-~~t~~~IA~~agvs~~tlY~~F~s 55 (196)
T 2qwt_A 27 AAEGL-GVPMDEIARRAGVGAGTVYRHFPT 55 (196)
T ss_dssp HHTCT-TSCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HhcCC-CCCHHHHHHHhCCCHHHHHHHCCC
Confidence 35698 999999999999999999888766
No 271
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=45.15 E-value=35 Score=26.21 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=29.8
Q ss_pred hhchHHHHHHHHHHH--hcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALK--TGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~--~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-+. .....+++++||+.||++++.|-..|+.
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~ 54 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSH 54 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHH
Confidence 455566666554332 1234689999999999999999877653
No 272
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=45.11 E-value=26 Score=27.22 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=27.3
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=.+++|.+||++.|+.|+.+-..+++
T Consensus 25 ~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (202)
T 3lwj_A 25 FIEKGYYNTSIRDIIALSEVGTGTFYNYFVD 55 (202)
T ss_dssp HHHHCTTTCCHHHHHHHHCSCHHHHHHHCSS
T ss_pred HHHcCcccCCHHHHHHHhCCCchhHHHHcCC
Confidence 3467999999999999999999999887765
No 273
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=44.95 E-value=32 Score=26.54 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=31.8
Q ss_pred hhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..|..-|...|..-...| ..+++++||..||++++.|-..|+.
T Consensus 35 ~glt~~q~~vL~~l~~~~-~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 35 TGLRVRSYSVLVLACEQA-EGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp GTCCHHHHHHHHHHHHST-TCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCC-CCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 346667777776443343 3489999999999999999887753
No 274
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=44.94 E-value=35 Score=25.63 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=31.9
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 28 ~l~~~~~~iL~~l~~~~--~~~~~ela~~l~is~~~vs~~l~~ 68 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDA--PLHQLALQERLQIDRAAVTRHLKL 68 (142)
T ss_dssp SSCHHHHHHHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45666777776655556 599999999999999999877754
No 275
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=44.78 E-value=24 Score=27.95 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=26.6
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+.|=.+++|.+||++.|+.|+.+-..+++
T Consensus 25 ~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~ 55 (189)
T 3vp5_A 25 FQTHSFHEAKIMHIVKALDIPRGSFYQYFED 55 (189)
T ss_dssp HHHSCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHCCcccccHHHHHHHhCCChHHHHHHCCC
Confidence 3457999999999999999999998876655
No 276
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=44.73 E-value=32 Score=23.95 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=23.3
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..+.+.||+.+|+.++.|-.|.++
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5689999999999999999999987
No 277
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=44.18 E-value=23 Score=24.10 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=35.4
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhc
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAE 321 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAK 321 (342)
..|+..|.+.|...|-.. ....+||..+|+++..|..|...-|.+
T Consensus 14 ~~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDA 58 (70)
T ss_dssp TSSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 358889999998876432 345789999999999999998766554
No 278
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=44.15 E-value=20 Score=27.59 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=27.4
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=.+++|.+||++.|+.|+.+-..+++
T Consensus 21 ~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (206)
T 3dew_A 21 FAQKGFYGVSIRELAQAAGASISMISYHFGG 51 (206)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCHHHHHHHSCH
T ss_pred HhcCCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 3578999999999999999999999887755
No 279
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=44.09 E-value=14 Score=26.43 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=22.9
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+=+.++++|+-||+.|+.|-.|.+.
T Consensus 9 ~~l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 9 SLVDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp SEECHHHHHHHHSSCHHHHHHHHHH
T ss_pred cccCHHHHHHHHCcCHHHHHHHHHC
Confidence 4578999999999999999999986
No 280
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=44.04 E-value=29 Score=27.00 Aligned_cols=31 Identities=6% Similarity=0.172 Sum_probs=27.7
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=..++|.+||++.|+.|+.|-..+.+
T Consensus 20 f~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 50 (192)
T 2zcm_A 20 FSEKGYDGTTLDDISKSVNIKKASLYYHYDN 50 (192)
T ss_dssp HHHHCTTTCCHHHHHHHTTCCHHHHHHHTCC
T ss_pred HHHcCcccCCHHHHHHHhCCChHHHHHHCCC
Confidence 3568999999999999999999999988766
No 281
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=44.00 E-value=28 Score=25.65 Aligned_cols=45 Identities=9% Similarity=0.072 Sum_probs=35.6
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhc
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAE 321 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAK 321 (342)
..|+..|.+.|.-.|-.. ....+||..+|++...|..+...-|.+
T Consensus 36 ~~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 36 AQLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HTSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 468889999998866433 256889999999999999998766554
No 282
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=43.95 E-value=14 Score=26.23 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCChhhHHhhhhhhh
Q 040593 296 MISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 296 ~RE~LA~~t~LpesrVQVWFQNRR 319 (342)
...+||..+|++...|..|..+++
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCC
Confidence 357899999999999999999875
No 283
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=43.94 E-value=35 Score=27.02 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=31.2
Q ss_pred HHHHHHH----HhcCccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 176 RKLAYAL----KTGRRKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 176 ~rLarAL----~~GRRKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
+.|..|+ +.|=.+|+|.+||++.|+.|+.+-..+++--
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~yF~sKe 55 (197)
T 2f07_A 14 KILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKN 55 (197)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSST
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHHHhCCCHH
Confidence 4444444 5899999999999999999999999987743
No 284
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=43.93 E-value=25 Score=27.08 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=..|+|.+||++.|+.++.+-..+++
T Consensus 31 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (208)
T 3cwr_A 31 SSGGAAAMTMEGVASEAGIAKKTLYRFASG 60 (208)
T ss_dssp HHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHcCHHhccHHHHHHHhCCCHHHHHHHcCC
Confidence 358999999999999999999999888776
No 285
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=43.92 E-value=22 Score=27.90 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=27.3
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+.|=..++|++||++.|+.|+.|...+++
T Consensus 22 ~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 52 (193)
T 2dg8_A 22 IAEEGIARVSHRRIAQRAGVPLGSMTYHFTG 52 (193)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCTHHHHHHCSS
T ss_pred HHHhChhhccHHHHHHHhCCCchhhheeCCC
Confidence 3468999999999999999999999887765
No 286
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=43.89 E-value=33 Score=26.96 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=32.3
Q ss_pred hhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 49 ~glt~~q~~vL~~l~~~~--~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 49 EKLPTPKLRLLSSLSAYG--ELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp HTCCHHHHHHHHHHHHHS--EEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCC--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 345666777776666666 689999999999999998877753
No 287
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=43.79 E-value=15 Score=25.25 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998865
No 288
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=43.68 E-value=27 Score=27.52 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=27.6
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
....|=..++|.+||++.|+.|+.+...+.+
T Consensus 17 ~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (185)
T 2yve_A 17 IGEYSLETLSYDSLAEATGLSKSGLIYHFPS 47 (185)
T ss_dssp HHHSCSTTCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHcChhhccHHHHHHHhCCChHHHHHhCcC
Confidence 3467999999999999999999999988866
No 289
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=43.60 E-value=18 Score=30.00 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=24.2
Q ss_pred HHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 180 YALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 180 rAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-..+.| .+||.+||+++|+.+..+--.+++
T Consensus 23 l~~~~G--~~s~~~IA~~aGvs~~tlY~hF~~ 52 (213)
T 2g7g_A 23 LVDRDG--DFRMPDLARHLNVQVSSIYHHAKG 52 (213)
T ss_dssp HHHHHS--SCCHHHHHHHTTSCHHHHHTTSCH
T ss_pred HHHHcC--CCCHHHHHHHhCCCHhHHHHHcCC
Confidence 334569 999999999999999987766544
No 290
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=43.57 E-value=26 Score=28.58 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=27.1
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+|+|.+||++.|+.|+.|-..+++
T Consensus 57 ~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~s 86 (229)
T 3bni_A 57 DEVGYDALSTRAVALRADVPIGSVYRFFGN 86 (229)
T ss_dssp HHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HhcChhhccHHHHHHHHCCCchhHHHHcCC
Confidence 357999999999999999999999888876
No 291
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=43.55 E-value=36 Score=26.52 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=30.6
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 49 ~lt~~~~~iL~~l~~~~--~~t~~ela~~l~is~~tvs~~l~~ 89 (162)
T 3cjn_A 49 GLSTAKMRALAILSAKD--GLPIGTLGIFAVVEQSTLSRALDG 89 (162)
T ss_dssp TCCHHHHHHHHHHHHSC--SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCChhHHHHHHHH
Confidence 45566666676555445 589999999999999998877754
No 292
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=43.53 E-value=37 Score=25.91 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=25.4
Q ss_pred HHHHHHHhcC--ccccHHHHHHHhcCCHHHHHHHhc
Q 040593 177 KLAYALKTGR--RKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 177 rLarAL~~GR--RKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
++-.+|..-- ..+++++||++||+.|..|=..|.
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~ 49 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 49 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3445555322 368999999999999999987765
No 293
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=43.44 E-value=37 Score=25.74 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 172 NWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 172 ~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.||++.|.. |..| ..++++||+.||++++.|-..|+.
T Consensus 32 ~~~~~il~~-L~~~--~~s~~ela~~l~is~stvsr~l~~ 68 (119)
T 2lkp_A 32 PSRLMILTQ-LRNG--PLPVTDLAEAIGMEQSAVSHQLRV 68 (119)
T ss_dssp HHHHHHHHH-HHHC--CCCHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHC--CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 577777764 4444 589999999999999999777653
No 294
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=43.41 E-value=15 Score=25.16 Aligned_cols=23 Identities=9% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998764
No 295
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=43.34 E-value=21 Score=27.17 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=27.3
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcCCCCchh
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGDPPPNLL 217 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ppP~ll 217 (342)
.+..+.++||+.+|+.++.|-.|.++-.|.+.
T Consensus 35 ~~glTq~eLA~~~GiS~~tis~iE~G~~~s~~ 66 (88)
T 3t76_A 35 DRDMKKGELREAVGVSKSTFAKLGKNENVSLT 66 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTTCCCCHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCCCcCHH
Confidence 46899999999999999999999998555443
No 296
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=43.10 E-value=15 Score=27.22 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=33.6
Q ss_pred hhchHHHHHHHHHH-HhcCcccc---HHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYAL-KTGRRKVS---VKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL-~~GRRKvs---Ik~LA~EL~LDRa~VL~wLR~ 211 (342)
....-|+..|+.++ ...+ ..+ +..||+.|||.-..|=-|+.|
T Consensus 14 r~~~~ql~~LE~~F~~~~~-yp~~~~r~~LA~~l~l~e~qVqvWFqN 59 (72)
T 2cqx_A 14 VNKVEPNDTLEKVFVSVTK-YPDEKRLKGLSKQLDWSVRKIQCWFRH 59 (72)
T ss_dssp CSCSCSTTHHHHHHHHTCS-SCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhCCChhhcchhhhh
Confidence 45667899999999 5544 333 568999999999999999976
No 297
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=43.04 E-value=27 Score=26.99 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=33.9
Q ss_pred hhhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 167 EVRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 167 ~~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
+..|..-|...|..-...+--.+++++||..||++++.|-..|+
T Consensus 32 ~~~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~ 75 (127)
T 2frh_A 32 EFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVK 75 (127)
T ss_dssp TTCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 34566777777776666533568999999999999999988775
No 298
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=43.00 E-value=27 Score=27.26 Aligned_cols=31 Identities=6% Similarity=0.043 Sum_probs=27.6
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=..++|.+||++.|+.++.|-..+++
T Consensus 39 ~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 69 (217)
T 3mvp_A 39 FSDKTYFNVTTNEIAKKADVSVGTLYAYFAS 69 (217)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHcCccccCHHHHHHHhCCChhHHHHHcCC
Confidence 3567999999999999999999999888765
No 299
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=42.98 E-value=17 Score=27.80 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 172 NWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 172 ~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|+++.|. +|.. ...++++||+.||+.++.|-..|+
T Consensus 25 ~~r~~IL~-~L~~--~~~s~~eLa~~lgis~stvs~~L~ 60 (108)
T 2kko_A 25 GRRLQILD-LLAQ--GERAVEAIATATGMNLTTASANLQ 60 (108)
T ss_dssp STTHHHHH-HHTT--CCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHH-HHHc--CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 35555554 5654 457999999999999999987775
No 300
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=42.87 E-value=25 Score=28.26 Aligned_cols=50 Identities=6% Similarity=0.039 Sum_probs=42.8
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
..||..+.+.|.-..+.- .+++||+.++++++.|.+--.|=|.|-++.++
T Consensus 153 ~~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~~r 202 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKMKLKSR 202 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSH
T ss_pred cCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHcCCCCH
Confidence 359999999998776542 47889999999999999999999999998764
No 301
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=42.86 E-value=32 Score=26.70 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=27.3
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.|+.+--.+++
T Consensus 30 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 59 (213)
T 2qtq_A 30 REGDVVDISLSELSLRSGLNSALVKYYFGN 59 (213)
T ss_dssp HHHTSSCCCHHHHHHHHCCCHHHHHHHHSS
T ss_pred HHcCcccccHHHHHHHhCCChhhHhHhcCC
Confidence 457999999999999999999999888877
No 302
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=42.76 E-value=25 Score=30.51 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=25.4
Q ss_pred HHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 180 YALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 180 rAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.+|....+-.++++||+.|||+++.|-.+|+
T Consensus 15 ~~l~~~~~~~~~~ela~~~gl~~stv~r~l~ 45 (249)
T 1mkm_A 15 DFIVKNPGDVSVSEIAEKFNMSVSNAYKYMV 45 (249)
T ss_dssp HHHHHCSSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4555555579999999999999999987765
No 303
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=42.69 E-value=31 Score=25.20 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCChhhHHhhhh
Q 040593 273 RLKKVQVKTLEMVYRR-----SKRPTDAMISSIVQVTNLPRRRIVKWFE 316 (342)
Q Consensus 273 rFT~~QLetLErvF~r-----T~YPdv~~RE~LA~~t~LpesrVQVWFQ 316 (342)
.++..|.+.+..+|.. +-|-+......+...+|++...++.+|+
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4688999999999975 5677778788888888999998888876
No 304
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=42.67 E-value=28 Score=26.57 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=27.1
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.++.+-..+.+
T Consensus 24 ~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 53 (191)
T 3on4_A 24 QKDGYNAFSFKDIATAINIKTASIHYHFPS 53 (191)
T ss_dssp HHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHhCcccCCHHHHHHHhCCCcchhhhcCCC
Confidence 468999999999999999999999888766
No 305
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=42.62 E-value=20 Score=26.70 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=34.3
Q ss_pred hhchHHHHHHHHHHH---hcCc--cccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 169 RLKNWQLRKLAYALK---TGRR--KVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 169 ~L~~WQl~rLarAL~---~GRR--KvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.+...|+..|...+. .... ......||.+|||.-..|--|+.|-
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNr 55 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNK 55 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 466789999999994 3222 2346789999999999999999773
No 306
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=42.60 E-value=33 Score=26.05 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=33.7
Q ss_pred cccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhh
Q 040593 271 QKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRA 320 (342)
Q Consensus 271 RTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRA 320 (342)
.+.|+..+...+-..|... + ...+||..+|++.+.|..|++.-+.
T Consensus 4 ~~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~~~~ 48 (141)
T 1u78_A 4 GSALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDPVS 48 (141)
T ss_dssp SCCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHSGGG
T ss_pred cccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHcccc
Confidence 3567888777766666432 3 4678899999999999999986543
No 307
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=42.48 E-value=15 Score=25.25 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=21.0
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998876
No 308
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=42.42 E-value=35 Score=23.75 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCC
Q 040593 273 RLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPE 326 (342)
Q Consensus 273 rFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~ 326 (342)
.++..|.+.|...|.-..+- ....++||..+|+++..|..+...-+.|-+..-
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 58889999999998432221 233578999999999999999887777665443
No 309
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=42.31 E-value=17 Score=28.28 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=34.0
Q ss_pred hhchHHHHHHHHHHHhcCcc-ccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRK-VSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK-vsIk~LA~EL~LDRa~VL~wLR 210 (342)
.-++|....|+.|+.+=|.- +||...|+.-|+++.....=++
T Consensus 10 ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk 52 (70)
T 2cob_A 10 RYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVK 52 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHH
Confidence 45679999999998764444 9999999999999998775543
No 310
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=42.21 E-value=42 Score=25.24 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=31.4
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-...| .++++.||+.||++++.|-..|+.
T Consensus 31 ~lt~~~~~iL~~l~~~~--~~~~~~la~~l~~~~~tvs~~l~~ 71 (138)
T 1jgs_A 31 DITAAQFKVLCSIRCAA--CITPVELKKVLSVDLGALTRMLDR 71 (138)
T ss_dssp TSCHHHHHHHHHHHHHS--SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcC--CCCHHHHHHHHCCChHHHHHHHHH
Confidence 45566777776655555 489999999999999999887764
No 311
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=42.19 E-value=24 Score=30.67 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=25.5
Q ss_pred HHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 180 YALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 180 rAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.+|.......++++||+.|||+++.|-.+|+
T Consensus 13 ~~l~~~~~~~s~~ela~~~gl~~stv~r~l~ 43 (241)
T 2xrn_A 13 RALGSHPHGLSLAAIAQLVGLPRSTVQRIIN 43 (241)
T ss_dssp HHHHTCTTCEEHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4566555679999999999999999987764
No 312
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=42.19 E-value=30 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
.+.|=.+++|.+||++.|+.|+.+-..+++--
T Consensus 31 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 31 TEQGFDATSVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHCTTTSCHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHcCcccCCHHHHHHHhCCCcchHhhhCCCHH
Confidence 45799999999999999999999999987744
No 313
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=42.17 E-value=40 Score=25.74 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=32.0
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 39 ~l~~~~~~iL~~l~~~~--~~t~~ela~~l~~~~~tvs~~l~~ 79 (150)
T 2rdp_A 39 PITPPQFVALQWLLEEG--DLTVGELSNKMYLACSTTTDLVDR 79 (150)
T ss_dssp SSCHHHHHHHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHHCCCchhHHHHHHH
Confidence 45566777776655556 589999999999999999887764
No 314
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=42.14 E-value=16 Score=25.12 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++.+.|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 57899999999999999998765
No 315
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=42.11 E-value=23 Score=29.33 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=36.8
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+...|+..|+..+..-..- ..+..||.+|||.-..|--|+.|
T Consensus 98 t~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 143 (151)
T 3d1n_I 98 TSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSN 143 (151)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHH
Confidence 357899999999999986542 24678999999999999999976
No 316
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=42.07 E-value=30 Score=27.38 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=27.5
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=..|+|.+||++.|+.++.+-..+++
T Consensus 29 ~~~G~~~~s~~~IA~~agvs~~t~Y~~F~s 58 (221)
T 3c2b_A 29 VEGGEKALTTSGLARAANCSKESLYKWFGD 58 (221)
T ss_dssp HHHCGGGCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HhCCcccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 457999999999999999999999998877
No 317
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=42.05 E-value=22 Score=26.27 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=21.7
Q ss_pred cHHHHHHHhcCCHHHHHHHhcCC
Q 040593 190 SVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 190 sIk~LA~EL~LDRa~VL~wLR~p 212 (342)
+.+.+|+.||+.+..|-.|++..
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~ 37 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRG 37 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHhc
Confidence 99999999999999999999763
No 318
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=41.92 E-value=20 Score=28.75 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=43.1
Q ss_pred hhhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCCC-Cchh
Q 040593 167 EVRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDPP-PNLL 217 (342)
Q Consensus 167 ~~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~pp-P~ll 217 (342)
++.+++|-..-...+|+.=|...+=+.||++.|+.|+.+-+..++.- |.+.
T Consensus 11 ~~~~~~~~~~~~~~kLK~il~GikQ~eLAK~iGIsqsTLSaIenG~~~PsL~ 62 (83)
T 2l1p_A 11 MLPPEQWSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVS 62 (83)
T ss_dssp TTTTSCCCHHHHHHHHHHHHTTSCHHHHHHHSSSCHHHHHHHHTCSSCCCCC
T ss_pred cCCHHHhhHHHHHHHHHHHHHhcCHHHHHHHcCCCHHHHHHHHcCCCCCCch
Confidence 56788898888888888777788889999999999999999999853 5554
No 319
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=41.56 E-value=33 Score=27.41 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=27.3
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.++.+-..+++
T Consensus 22 ~~~G~~~~s~~~IA~~aGvs~~tiY~~F~s 51 (202)
T 2d6y_A 22 ARHGIAGARIDRIAAEARANKQLIYAYYGN 51 (202)
T ss_dssp HHHTTTSCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHcCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 457999999999999999999999988876
No 320
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=41.52 E-value=23 Score=27.46 Aligned_cols=31 Identities=6% Similarity=0.250 Sum_probs=26.7
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=.+|+|.+||++.|+.++.+-..+.+
T Consensus 24 f~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 54 (203)
T 3b81_A 24 FIANGYENTTLAFIINKLGISKGALYHYFSS 54 (203)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCHHHHHTTCSS
T ss_pred HHHcCcccCcHHHHHHHhCCCchhHHHHcCC
Confidence 3468999999999999999999998766655
No 321
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=41.48 E-value=35 Score=27.15 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=31.9
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|..-|...|..-...| .+++++||+.||++++.|-..|+
T Consensus 42 ~lt~~~~~iL~~L~~~~--~~t~~eLa~~l~is~~tvs~~l~ 81 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHG--PINLATLATLLGVQPSATGRMVD 81 (168)
T ss_dssp SCCHHHHHHHHHHHHHC--SEEHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHhCCCHHHHHHHHH
Confidence 45666777777666656 59999999999999999887775
No 322
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=41.36 E-value=23 Score=29.36 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=37.2
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+..+|+..|+.++.....- ..+..||..|||.-..|--|+.|
T Consensus 92 t~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 137 (146)
T 1au7_A 92 TTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCN 137 (146)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHh
Confidence 357899999999999987653 23678999999999999999976
No 323
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=41.30 E-value=19 Score=27.44 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=26.4
Q ss_pred HhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 183 KTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 183 ~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.|=.+++|.+||++.|+.|+.+-..+.+
T Consensus 19 ~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (170)
T 3egq_A 19 KKPPHEVSIEEIAREAKVSKSLIFYHFES 47 (170)
T ss_dssp TSCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred hcCCccCcHHHHHHHhCCCchhHHHHcCC
Confidence 57889999999999999999999988766
No 324
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=41.14 E-value=40 Score=23.87 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=15.3
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++...|..|..+++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 34677777777777777766654
No 325
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=41.02 E-value=29 Score=27.48 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=27.4
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=..|+|.+||++.|+.++.+-..+++
T Consensus 36 f~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 66 (214)
T 2zb9_A 36 LLTEGTAQLTFERVARVSGVSKTTLYKWWPS 66 (214)
T ss_dssp HHHHCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHhCcccCCHHHHHHHHCCCHHHHHHHCCC
Confidence 3457999999999999999999999888766
No 326
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=41.02 E-value=17 Score=24.35 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.3
Q ss_pred HHHHHHHhCCChhhHHhhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKRA 320 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRRA 320 (342)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999988764
No 327
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=40.98 E-value=24 Score=27.21 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=26.5
Q ss_pred HHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 180 YALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 180 rAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.-.+.|=.+|+|.+||++.|+.|+.+-..+.+
T Consensus 23 lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 54 (196)
T 3he0_A 23 LIAESGFQGLSMQKLANEAGVAAGTIYRYFSD 54 (196)
T ss_dssp HHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHhCcccCCHHHHHHHhCCCcchHHHhcCC
Confidence 33467999999999999999999998766554
No 328
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=40.89 E-value=23 Score=28.06 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=30.7
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|..-|...|..-...|...+++++||+.||++++.|-..|+
T Consensus 43 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~ 84 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLID 84 (168)
T ss_dssp TCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHH
Confidence 456667777877667666789999999999999998877765
No 329
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=40.75 E-value=38 Score=25.64 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=30.5
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 26 ~lt~~~~~iL~~l~~~~--~~t~~~la~~l~~s~~~vs~~l~~ 66 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCENP--GIIQEKIAELIKVDRTTAARAIKR 66 (144)
T ss_dssp TCTTTHHHHHHHHHHST--TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCc--CcCHHHHHHHHCCCHhHHHHHHHH
Confidence 34555666665555545 689999999999999999887764
No 330
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=40.68 E-value=34 Score=22.67 Aligned_cols=39 Identities=10% Similarity=0.224 Sum_probs=27.6
Q ss_pred cCC--HHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhh
Q 040593 273 RLK--KVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFE 316 (342)
Q Consensus 273 rFT--~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQ 316 (342)
.++ ..+...+-..|.. .+ ...+||..+|+++..|..|++
T Consensus 13 ~l~~~~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 355 5555555555543 23 467899999999999999985
No 331
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=40.63 E-value=38 Score=26.23 Aligned_cols=46 Identities=9% Similarity=0.041 Sum_probs=38.5
Q ss_pred hhhhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 166 REVRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 166 r~~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
....|-.=|...|..-...|..-++.++||+.++|+-+.|--.|+.
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~ 59 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKN 59 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3445667788888888888999999999999999999999777653
No 332
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=40.46 E-value=26 Score=27.17 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=26.8
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+|||.+||++.|+.++.+--.+++
T Consensus 16 ~~~Gy~~~s~~~Ia~~agvskgtlY~~F~s 45 (179)
T 2eh3_A 16 FEKGYQGTSVEEIVKRANLSKGAFYFHFKS 45 (179)
T ss_dssp HHHCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHcCCccCCHHHHHHHhCCCcHHHHHHcCC
Confidence 568999999999999999999998877765
No 333
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=40.25 E-value=29 Score=27.02 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=27.6
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.+.|=..++|.+||++.|+.|+.+-..+.+-
T Consensus 21 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 51 (195)
T 2dg7_A 21 SEHGYDNVTVTDIAERAGLTRRSYFRYFPDK 51 (195)
T ss_dssp HHSCGGGCCHHHHHHHTTCCHHHHHHHCSST
T ss_pred HhcCccccCHHHHHHHhCCCHHHHHHHcCCH
Confidence 3569999999999999999999999988763
No 334
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=40.20 E-value=34 Score=25.74 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=28.4
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|..-|.+.|..- ......+++++||+.||++++.|-..|+
T Consensus 23 gl~~~~~~il~~L-~~~~~~~t~~ela~~l~~~~stvs~~l~ 63 (152)
T 1ku9_A 23 GLNKSVGAVYAIL-YLSDKPLTISDIMEELKISKGNVSMSLK 63 (152)
T ss_dssp TCCHHHHHHHHHH-HHCSSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCChhHHHHHHHH-HHcCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444555555433 3222459999999999999999988775
No 335
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=40.04 E-value=34 Score=26.81 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=27.9
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=..|+|.+||++.|+.++.+-..+++
T Consensus 24 f~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 54 (216)
T 3f0c_A 24 FAHYGLCKTTMNEIASDVGMGKASLYYYFPD 54 (216)
T ss_dssp HHHHCSSSCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHcCCCcCCHHHHHHHhCCCHHHHHHHcCC
Confidence 3568999999999999999999999888876
No 336
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=39.97 E-value=21 Score=27.43 Aligned_cols=31 Identities=6% Similarity=0.095 Sum_probs=26.2
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=.+++|.+||++.|+.|+.+...+.+
T Consensus 23 f~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 53 (197)
T 3rd3_A 23 MAVKGFSGVGLNEILQSAGVPKGSFYHYFKS 53 (197)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCHHHHTTTCSC
T ss_pred HHHCCcccCCHHHHHHHhCCChhhHHHHcCC
Confidence 3467999999999999999999988766554
No 337
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=39.89 E-value=38 Score=26.38 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=27.2
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+|+|.+||++.|+.|+.+--.+++
T Consensus 17 ~~~G~~~~s~~~IA~~agvsk~t~Y~~F~s 46 (190)
T 3vpr_A 17 TEKGYEATSVQDLAQALGLSKAALYHHFGS 46 (190)
T ss_dssp HHHCSTTCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 468999999999999999999999888865
No 338
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=39.87 E-value=26 Score=25.22 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=24.4
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.+..+.++||+.+|+.++.|-.|.++-
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~g~ 55 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMRGK 55 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 467899999999999999999999874
No 339
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=39.82 E-value=49 Score=24.78 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=31.5
Q ss_pred hhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 32 ~~lt~~~~~iL~~l~~~~--~~t~~ela~~l~~s~~~vs~~l~~ 73 (142)
T 2fbi_A 32 HGLTEQQWRVIRILRQQG--EMESYQLANQACILRPSMTGVLAR 73 (142)
T ss_dssp HTCCHHHHHHHHHHHHHC--SEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcC--CCCHHHHHHHHCCCHhHHHHHHHH
Confidence 346666777776655556 389999999999999998777753
No 340
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=39.80 E-value=27 Score=23.79 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.6
Q ss_pred cHHHHHHHhcCCHHHHHHHhcCC
Q 040593 190 SVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 190 sIk~LA~EL~LDRa~VL~wLR~p 212 (342)
++..+|+.||+....|-.|+++.
T Consensus 15 s~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcCC
Confidence 99999999999999999999863
No 341
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=39.79 E-value=24 Score=27.00 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=26.0
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.|+.+-..+.+
T Consensus 24 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 53 (196)
T 3col_A 24 LAEGPAGVSTTKVAKRVGIAQSNVYLYFKN 53 (196)
T ss_dssp HHHCGGGCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HhcCcccCCHHHHHHHhCCcHHHHHHHhCC
Confidence 457999999999999999999988766655
No 342
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=39.76 E-value=19 Score=27.46 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=26.9
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+|+|.+||++.|+.|+.+-..+++
T Consensus 22 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (195)
T 3pas_A 22 ADHGFSATSVGKIAKAAGLSPATLYIYYED 51 (195)
T ss_dssp HHHHHHHCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHcChHhcCHHHHHHHhCCCchHHHHHcCC
Confidence 456889999999999999999999988777
No 343
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=39.75 E-value=33 Score=27.06 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 172 NWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 172 ~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|+++.|. +|..| ..++.+||+.||+.++.|-..|+
T Consensus 46 ~~rl~IL~-~L~~~--~~s~~ela~~lgis~stvs~~L~ 81 (122)
T 1r1t_A 46 PNRLRLLS-LLARS--ELCVGDLAQAIGVSESAVSHQLR 81 (122)
T ss_dssp HHHHHHHH-HHTTC--CBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHH-HHHcC--CCCHHHHHHHHCcCHHHHHHHHH
Confidence 46766665 56544 57999999999999999977665
No 344
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=39.69 E-value=21 Score=29.19 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=42.9
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
..||+.+.+.|+-.... ...++||..++++++.|.+--++=|.|-++.++
T Consensus 158 ~~Lt~rE~~vL~~l~~g------~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~~~ 207 (225)
T 3klo_A 158 AKLTKREQQIIKLLGSG------ASNIEIADKLFVSENTVKTHLHNVFKKINAKNR 207 (225)
T ss_dssp HTSCHHHHHHHHHHTTT------CCHHHHHHHTTCCHHHHHHHHHHHTTTSCCSSH
T ss_pred ccCCHHHHHHHHHHHcC------CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCH
Confidence 35999999999986652 357889999999999999999999999998764
No 345
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=39.63 E-value=31 Score=26.28 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=32.0
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 37 ~l~~~~~~iL~~l~~~~--~~~~~~la~~l~~~~~tvs~~l~~ 77 (147)
T 1z91_A 37 NITYPQYLALLLLWEHE--TLTVKKMGEQLYLDSGTLTPMLKR 77 (147)
T ss_dssp CCCHHHHHHHHHHHHHS--EEEHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCcCcHHHHHHH
Confidence 35566777776666666 689999999999999999887763
No 346
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=39.48 E-value=45 Score=25.28 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=24.0
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.++||+.+|+.++.|-.|.++
T Consensus 39 ~~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 39 EKGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 36789999999999999999999998
No 347
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=39.41 E-value=19 Score=24.96 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998874
No 348
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=39.32 E-value=31 Score=27.07 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=27.0
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=..|+|.+||++.|+.++.+-..+.+
T Consensus 22 ~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 51 (199)
T 2o7t_A 22 RTHHHDSLTMENIAEQAGVGVATLYRNFPD 51 (199)
T ss_dssp HHSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHCCCccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 357999999999999999999999888766
No 349
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=39.32 E-value=44 Score=25.60 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=31.6
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 34 ~l~~~~~~iL~~l~~~~--~~t~~ela~~l~~s~~tvs~~l~~ 74 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHG--SLKVSEIAERMEVKPSAVTLMADR 74 (155)
T ss_dssp TCCHHHHHHHHHHHHHS--EEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45666777776555555 589999999999999999887764
No 350
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=39.19 E-value=34 Score=29.91 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 175 LRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 175 l~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.+.|..+++.|...+++..+|+.||++|..+-..|+
T Consensus 266 ~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~ 301 (338)
T 3pfi_A 266 LRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIE 301 (338)
T ss_dssp HHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 444555555577889999999999999999987776
No 351
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=39.18 E-value=40 Score=27.70 Aligned_cols=42 Identities=10% Similarity=0.208 Sum_probs=34.3
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
|...|...|..-...+...++++.||..||++++.|-..|+.
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~ 80 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVAN 80 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 677788878776664556799999999999999999888764
No 352
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=39.12 E-value=46 Score=25.27 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=30.7
Q ss_pred hhchHHHHHHHHHHH-hcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALK-TGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~-~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-.. .| .++++.||+.||++++.|-..|+.
T Consensus 32 ~l~~~~~~iL~~l~~~~~--~~~~~~la~~l~i~~~~vs~~l~~ 73 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGG--DVTPSELAAAERMRSSNLAALLRE 73 (147)
T ss_dssp HHHHHHHHHHHHHHHTTS--CBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC--CCCHHHHHHHhCCChhhHHHHHHH
Confidence 355566666655554 34 589999999999999999877753
No 353
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=39.02 E-value=32 Score=26.93 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=25.7
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|= +++|.+||++.|+.++.+-..+++
T Consensus 30 ~~~G~-~~s~~~Ia~~agvs~~t~Y~~F~s 58 (199)
T 2rek_A 30 ARHGA-DASLEEIARRAGVGSATLHRHFPS 58 (199)
T ss_dssp HHHGG-GCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HhcCC-CCCHHHHHHHhCCchHHHHHHCCC
Confidence 35799 999999999999999998887765
No 354
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=38.80 E-value=19 Score=24.38 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 57899999999999999998864
No 355
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=38.70 E-value=26 Score=29.70 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=36.3
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+..+|+..|+.++..-+.- .-+..||..|||.-..|--|+.|
T Consensus 104 t~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 149 (164)
T 2xsd_C 104 TSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCN 149 (164)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred eeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHH
Confidence 457889999999999987653 23678999999999999999976
No 356
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=38.56 E-value=26 Score=26.77 Aligned_cols=44 Identities=7% Similarity=0.044 Sum_probs=36.4
Q ss_pred hhchHHHHHHHHHHHhcCcc--ccHHHHHHHhc---------------CCHHHHHHHhcCC
Q 040593 169 RLKNWQLRKLAYALKTGRRK--VSVKSLAAELC---------------LDRAVVLEMLGDP 212 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~---------------LDRa~VL~wLR~p 212 (342)
.+...|+..|+.++....-= .-+..||.+|+ |.-..|--|+.|-
T Consensus 13 ~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNR 73 (95)
T 2cuf_A 13 TWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANR 73 (95)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHH
Confidence 45778999999999985532 23678999999 9999999999873
No 357
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=38.37 E-value=21 Score=27.52 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.8
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.|+.+-..+++
T Consensus 22 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (183)
T 1zk8_A 22 DANGVQEVTLASLAQTLGVRSPSLYNHVKG 51 (183)
T ss_dssp HHHCGGGCCHHHHHHHHTSCHHHHTTTCSS
T ss_pred HhcCccccCHHHHHHHcCCCchHHHHHcCC
Confidence 457999999999999999999988766655
No 358
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=38.31 E-value=32 Score=23.23 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=23.6
Q ss_pred CccccHHHHHHHhc--CCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELC--LDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~--LDRa~VL~wLR~ 211 (342)
.+..+.++||+.+| +.++.|-.|.++
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 35789999999999 999999999987
No 359
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=37.99 E-value=34 Score=24.78 Aligned_cols=43 Identities=14% Similarity=-0.052 Sum_probs=32.6
Q ss_pred hhchHHHHHHHHHHHhcCc-----cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRR-----KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRR-----KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+...|...|...+..-.. ......||..+||....|--|+.|
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqN 51 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFIN 51 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHH
Confidence 4567889999999883222 123578999999999999999987
No 360
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=37.98 E-value=50 Score=25.57 Aligned_cols=40 Identities=10% Similarity=0.075 Sum_probs=27.0
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|..-|...|..-...| .+++++||+.||++++.|-..|+
T Consensus 46 ~lt~~~~~iL~~l~~~~--~~t~~ela~~l~is~~tvs~~l~ 85 (162)
T 2fa5_A 46 GMAIPEWRVITILALYP--GSSASEVSDRTAMDKVAVSRAVA 85 (162)
T ss_dssp CCCHHHHHHHHHHHHST--TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC--CCCHHHHHHHHCCCHHHHHHHHH
Confidence 45555666565444434 57888888888888888776665
No 361
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=37.85 E-value=31 Score=26.99 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=27.6
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=.+++|.+||++.|+.|+.+...+.+
T Consensus 23 ~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 53 (216)
T 3s5r_A 23 FAEQGIAATTMAEIAASVGVNPAMIHYYFKT 53 (216)
T ss_dssp HHHHCTTTCCHHHHHHTTTCCHHHHHHHCSS
T ss_pred HHHcCcccCCHHHHHHHHCCCHHHHHHHcCC
Confidence 3568999999999999999999999888765
No 362
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=37.82 E-value=28 Score=28.94 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=28.8
Q ss_pred HHHHHHHH----hcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 176 RKLAYALK----TGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 176 ~rLarAL~----~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.|..|+. .|=..++|..||+++|+.+..+.-.+.+
T Consensus 29 ~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~~ 68 (211)
T 3fiw_A 29 TVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFRT 68 (211)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTCSS
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 44555554 6999999999999999999988776644
No 363
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=37.72 E-value=19 Score=26.35 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCChhhHHhhhhhhh
Q 040593 296 MISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 296 ~RE~LA~~t~LpesrVQVWFQNRR 319 (342)
...+||+.+|++.+.|..|..+++
T Consensus 24 sq~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 24 TQLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHhCCC
Confidence 357899999999999999998864
No 364
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=37.71 E-value=25 Score=30.46 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=24.1
Q ss_pred cccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 188 KVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 188 KvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
+++|++||+++|+.++.|=--|.+.+
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~~~ 27 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNP 27 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Confidence 58999999999999999999999865
No 365
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=37.58 E-value=46 Score=25.61 Aligned_cols=40 Identities=25% Similarity=0.231 Sum_probs=30.2
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
|..-|...|..-...| .+++++||+.||++++.|-..|+.
T Consensus 45 l~~~~~~iL~~l~~~~--~~t~~ela~~l~~s~~tvs~~l~~ 84 (153)
T 2pex_A 45 LTYPQYLVMLVLWETD--ERSVSEIGERLYLDSATLTPLLKR 84 (153)
T ss_dssp CCHHHHHHHHHHHHSC--SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCC--CcCHHHHHHHhCCCcccHHHHHHH
Confidence 5555666665544444 589999999999999999888764
No 366
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=37.41 E-value=32 Score=28.48 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=25.1
Q ss_pred Hh-cCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 183 KT-GRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 183 ~~-GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+. |=.+++|.+||+++|+.+..+--.+++
T Consensus 20 ~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 49 (220)
T 1z0x_A 20 KSPTLEQLSMRKVAKQLGVQAPAIYWYFKN 49 (220)
T ss_dssp HSCCGGGCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred hcCCcccCCHHHHHHHcCCCHHHHHHhcCC
Confidence 45 888999999999999999998776655
No 367
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=37.39 E-value=29 Score=26.64 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=26.6
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=..++|.+||++.|+.++.|-..+++
T Consensus 20 ~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 50 (199)
T 3qbm_A 20 FNVSGYAGTAISDIMAATGLEKGGIYRHFES 50 (199)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCHHHHHTTCSS
T ss_pred HHHhCcCcCCHHHHHHHhCCCccHHHHhCCC
Confidence 3468999999999999999999998766654
No 368
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=37.37 E-value=19 Score=31.93 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 040593 88 PFEALFSLL 96 (342)
Q Consensus 88 a~E~LF~~L 96 (342)
++..+...+
T Consensus 290 g~~~l~~~l 298 (386)
T 2ca6_A 290 AVRTLKTVI 298 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 369
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=37.24 E-value=48 Score=28.21 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=30.9
Q ss_pred HHHHHHHHH----hcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 175 LRKLAYALK----TGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 175 l~rLarAL~----~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|..|++ .|=..++|..||+++|+.+..+.-.+++
T Consensus 32 ~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~ 72 (241)
T 2hxi_A 32 EQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFRN 72 (241)
T ss_dssp HHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHHHcCC
Confidence 455666665 4888999999999999999999888877
No 370
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=37.08 E-value=22 Score=27.10 Aligned_cols=31 Identities=6% Similarity=0.156 Sum_probs=27.4
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=.+++|.+||++.|+.|+.+-..+.+
T Consensus 19 ~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 19 SQLQGYHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp HHHHCTTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred HHHcCccccCHHHHHHHHCCCchhHHHHccc
Confidence 3468999999999999999999999887775
No 371
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=37.06 E-value=20 Score=28.07 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhh
Q 040593 278 QVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 278 QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRR 319 (342)
=|+.-..+|...-| . .....||+..|++...|-..|.||-
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTRE 59 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHH
Confidence 35677888999999 6 8899999999999999999999974
No 372
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=37.04 E-value=22 Score=27.52 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.|+.+-..+.+
T Consensus 34 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~ 63 (203)
T 3mnl_A 34 SKGGYEAVQMRAVADRADVAVGTLYRYFPS 63 (203)
T ss_dssp HHHHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHcCCccCCHHHHHHHcCCChhHHHHHcCC
Confidence 356888999999999999999999888876
No 373
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=36.70 E-value=35 Score=28.25 Aligned_cols=35 Identities=11% Similarity=0.248 Sum_probs=29.1
Q ss_pred HHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 178 LAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 178 LarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
+.-..+.|=.+++|..||+++|+.+..+--.+++-
T Consensus 12 ~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hf~~K 46 (209)
T 3bqy_A 12 LDLLNESGLDTLTMRRLAQAMDVQAGALYRYFAAK 46 (209)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHhCCcccCCHHHHHHHhCCCcchHHhhcCCH
Confidence 33444579999999999999999999998888763
No 374
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=36.53 E-value=25 Score=27.14 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=27.4
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
...|=.+++|.+||++.|+.|+.+-..+.+-
T Consensus 28 ~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 58 (191)
T 4aci_A 28 AEHGYEGATVRRLEEATGKSRGAIFHHFGDK 58 (191)
T ss_dssp HHHHHHHCCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred HHhCcccCCHHHHHHHHCCCchHHHHHCCCH
Confidence 4678899999999999999999999888753
No 375
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=36.52 E-value=42 Score=26.53 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHHHHHHH----HhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 175 LRKLAYAL----KTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 175 l~rLarAL----~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|..|+ +.|=.+|+|.+||++.|+.++.+--.+++
T Consensus 17 ~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~s 57 (204)
T 2ibd_A 17 TELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDS 57 (204)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHHHhcCC
Confidence 34455544 58999999999999999999999888766
No 376
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=36.50 E-value=47 Score=28.37 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=29.1
Q ss_pred HHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 179 AYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 179 arAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
.-..+.|=..++|..||+++|+.+..+--.+++--
T Consensus 17 ~l~~~~G~~~~S~r~IA~~aGvs~~tlY~hF~~K~ 51 (234)
T 2opt_A 17 GILDAEGLDALSMRRLAQELKTGHASLYAHVGNRD 51 (234)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred HHHHhCCccccCHHHHHHHHCCChhHHHHHcCCHH
Confidence 33445699999999999999999999988887643
No 377
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=36.49 E-value=24 Score=24.95 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57899999999999999999865
No 378
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=36.44 E-value=38 Score=25.10 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 171 KNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 171 ~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
..|.++.|. .|..|. .++.+||+.||+.+..|-.-|+
T Consensus 22 ~~~r~~Il~-~L~~~~--~~~~ela~~l~is~~tvs~~L~ 58 (102)
T 3pqk_A 22 HPVRLMLVC-TLVEGE--FSVGELEQQIGIGQPTLSQQLG 58 (102)
T ss_dssp SHHHHHHHH-HHHTCC--BCHHHHHHHHTCCTTHHHHHHH
T ss_pred CHHHHHHHH-HHHhCC--CCHHHHHHHHCcCHHHHHHHHH
Confidence 356666654 466664 8999999999999999877665
No 379
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=36.44 E-value=39 Score=25.34 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=24.5
Q ss_pred cCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 185 GRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 185 GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+..+.+.||+.+|+.++.|-.|.++
T Consensus 21 ~~~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 21 EPLDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 456789999999999999999999987
No 380
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=36.29 E-value=41 Score=26.37 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=30.4
Q ss_pred HHHHHHH----HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 175 LRKLAYA----LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 175 l~rLarA----L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|..| .+.|=.+|+|.+||++.|+.|+.+--.+++
T Consensus 15 ~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~F~s 55 (192)
T 2fq4_A 15 KAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPN 55 (192)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHCCC
Confidence 4455555 458999999999999999999999888765
No 381
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=36.29 E-value=22 Score=25.31 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhhHHhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFED 317 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQN 317 (342)
..++|..+|++.+.|+.|-++
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 568999999999999999876
No 382
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.28 E-value=31 Score=24.18 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=24.8
Q ss_pred HHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 179 AYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 179 arAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
..+++.| .+...||+.||+.++.|-.|.+..|
T Consensus 4 ~~~i~~~---~tq~~lA~~lGvs~~~Vs~we~~~p 35 (61)
T 1rzs_A 4 KDVIDHF---GTQRAVAKALGISDAAVSQWKEVIP 35 (61)
T ss_dssp HHHHHHH---SSHHHHHHHHTCCHHHHHHCCSBCC
T ss_pred HHHHHHc---CCHHHHHHHhCCCHHHHHHHHhhCC
Confidence 4455555 3789999999999999999983333
No 383
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=36.24 E-value=49 Score=26.12 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=30.6
Q ss_pred hhhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 167 EVRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 167 ~~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.-|..-|...|..-.......+++++||+.||++++.|-..++.
T Consensus 30 ~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~ 74 (147)
T 4b8x_A 30 PYGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDR 74 (147)
T ss_dssp GGTCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 334555666666433222233689999999999999998777753
No 384
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=36.19 E-value=40 Score=26.54 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=27.2
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=..|+|.+||++.|+.|+.+-..+++
T Consensus 44 ~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~s 73 (222)
T 3bru_A 44 TEKGYSSVGVDEILKAARVPKGSFYHYFRN 73 (222)
T ss_dssp HHSCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHcCCCcCcHHHHHHHhCCCcchhhhhCCC
Confidence 457999999999999999999999888876
No 385
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=36.11 E-value=23 Score=26.68 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.2
Q ss_pred cHHHHHHHhcCCHHHHHHHhcC
Q 040593 190 SVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 190 sIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+...||+-||+.|..|-.|++.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 4899999999999999999864
No 386
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=36.03 E-value=39 Score=28.24 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.4
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=.+|+|.+||++.|+.++.|-..+.+
T Consensus 61 f~e~G~~~~Ti~~IA~~AGvs~~t~Y~yF~s 91 (260)
T 2of7_A 61 IRQQGYEATTVEQIAERAEVSPSTVLRYFPT 91 (260)
T ss_dssp HHHHCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHhCcccccHHHHHHHhCCChHHHHHHcCC
Confidence 3457999999999999999999999887765
No 387
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=36.02 E-value=18 Score=31.70 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=24.8
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
+|.....-.++++||+.|||+++.|..+|+
T Consensus 22 ~l~~~~~~~~~~eia~~~gl~~stv~r~l~ 51 (257)
T 2g7u_A 22 AFDAQRPNPTLAELATEAGLSRPAVRRILL 51 (257)
T ss_dssp TCSSSCSSCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344455679999999999999999988775
No 388
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=35.92 E-value=66 Score=24.24 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=31.3
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-...| .++++.||+.||++++.|-..|+.
T Consensus 30 ~l~~~~~~iL~~l~~~~--~~~~~~la~~l~~s~~tvs~~l~~ 70 (145)
T 2a61_A 30 GITPAQFDILQKIYFEG--PKRPGELSVLLGVAKSTVTGLVKR 70 (145)
T ss_dssp TCCHHHHHHHHHHHHHC--CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHHCCCchhHHHHHHH
Confidence 45566666776555555 589999999999999998877763
No 389
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=35.88 E-value=31 Score=26.19 Aligned_cols=40 Identities=30% Similarity=0.319 Sum_probs=25.5
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|..-|...|..-...| .+++++||..||++++.|-..|+
T Consensus 34 ~l~~~~~~iL~~l~~~~--~~~~~ela~~l~~~~~tvs~~l~ 73 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDES--PVNVKKVVTELALDTGTVSPLLK 73 (142)
T ss_dssp TCCHHHHHHHHHHHHSS--EEEHHHHHHHTTCCTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC--CcCHHHHHHHHCCChhhHHHHHH
Confidence 45555666665544444 47778888888877776665554
No 390
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=35.87 E-value=13 Score=32.91 Aligned_cols=30 Identities=17% Similarity=0.373 Sum_probs=25.0
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
+|.....-.++++||+.|||+++.|.-+|+
T Consensus 14 ~l~~~~~~lsl~eia~~lgl~ksT~~RlL~ 43 (260)
T 3r4k_A 14 YFNHGRLEIGLSDLTRLSGMNKATVYRLMS 43 (260)
T ss_dssp TCBTTBSEEEHHHHHHHHCSCHHHHHHHHH
T ss_pred HHhhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 444456779999999999999999988775
No 391
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=35.79 E-value=35 Score=26.06 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=28.7
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|..-|...|..-...| .+++++||..||++++.|-..|+
T Consensus 34 ~lt~~~~~vL~~l~~~~--~~t~~eLa~~l~~~~~tvs~~l~ 73 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQR--GLNLQDLGRQMCRDKALITRKIR 73 (142)
T ss_dssp CCCHHHHHHHHHHHHTT--TCCHHHHHHHHC---CHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCC--CcCHHHHHHHhCCCHHHHHHHHH
Confidence 46666777777666666 58999999999999988877765
No 392
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=35.65 E-value=20 Score=30.16 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred ccccCCHHHHH---HHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhh
Q 040593 270 AQKRLKKVQVK---TLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 270 kRTrFT~~QLe---tLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRR 319 (342)
+++.+|..|.+ ++-.....-.---.....+||+.+|++...|..|..+++
T Consensus 3 ~~~~lt~~~~~~~~~~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 3 KKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC
No 393
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=35.63 E-value=37 Score=24.98 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHhh-----hcCCCCHHHHHHHHHHhCCChhhHHhhhh
Q 040593 274 LKKVQVKTLEMVYR-----RSKRPTDAMISSIVQVTNLPRRRIVKWFE 316 (342)
Q Consensus 274 FT~~QLetLErvF~-----rT~YPdv~~RE~LA~~t~LpesrVQVWFQ 316 (342)
++..|.+.|..+|. .+-|-+......+-..+|++...|+.+|+
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 67889999999995 35677888888888888999999988886
No 394
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=35.62 E-value=40 Score=26.65 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.5
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=.+++|.+||++.|+.|+.+-..+.+
T Consensus 16 f~~~G~~~~s~~~IA~~Agvs~~t~Y~~F~s 46 (212)
T 3rh2_A 16 FNEHGERTITTNHIAAHLDISPGNLYYHFRN 46 (212)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHcCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 3568999999999999999999999887765
No 395
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=35.58 E-value=50 Score=24.78 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 172 NWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 172 ~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+++.|..-+..|. .++++||+.||+.++.|-.-|+.
T Consensus 27 ~~Rl~IL~~l~~~~~--~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 27 PMRLKIVNELYKHKA--LNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp HHHHHHHHHHHHHSC--EEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC--cCHHHHHHHHCcCHHHHHHHHHH
Confidence 345666656666664 89999999999999999776653
No 396
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=35.48 E-value=38 Score=26.65 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=31.2
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-...| .+++++||..||++++.|-..|+.
T Consensus 43 glt~~q~~iL~~l~~~~--~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 43 EISLPQFTALSVLAAKP--NLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp TCCHHHHHHHHHHHHCT--TCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45666777776655556 689999999999999888777653
No 397
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=35.43 E-value=30 Score=24.53 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=22.0
Q ss_pred cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 188 KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 188 KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.++++++|+-||+.+..|-.|.+.
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTT
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC
Confidence 367899999999999999999987
No 398
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=35.38 E-value=37 Score=28.18 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=37.0
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+...|+..|..++.....- .-...||.+|||.-..|--|+.|
T Consensus 102 t~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqN 147 (164)
T 2d5v_A 102 LVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMN 147 (164)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChh
Confidence 358899999999999988543 23568999999999999999976
No 399
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=35.32 E-value=58 Score=24.97 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=28.7
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|..-|...|..-...| .+++++||+.||++++.|-..|+
T Consensus 38 ~lt~~~~~iL~~l~~~~--~~t~~eLa~~l~~~~~tvs~~l~ 77 (154)
T 2qww_A 38 GLTIQQLAMINVIYSTP--GISVADLTKRLIITGSSAAANVD 77 (154)
T ss_dssp TCCHHHHHHHHHHHHST--TEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHH
Confidence 45556666665555544 48899999999999988877665
No 400
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=35.11 E-value=70 Score=23.87 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=30.3
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-... -.+++++||+.||++++.|-..|+.
T Consensus 26 ~l~~~~~~iL~~l~~~--~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 26 NLTDAQVACLLRIHRE--PGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp TCCHHHHHHHHHHHHS--TTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc--CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4555566666544443 4689999999999999999887753
No 401
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=35.09 E-value=31 Score=26.69 Aligned_cols=39 Identities=8% Similarity=0.300 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHHhcCccccHHHHHHHh-cCCHHHHHHHhc
Q 040593 171 KNWQLRKLAYALKTGRRKVSVKSLAAEL-CLDRAVVLEMLG 210 (342)
Q Consensus 171 ~~WQl~rLarAL~~GRRKvsIk~LA~EL-~LDRa~VL~wLR 210 (342)
..|.+..|. +|..|-..+++.+||+.| |+.+..|-.-|+
T Consensus 26 ~~wrl~IL~-~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~ 65 (111)
T 3df8_A 26 KKYTMLIIS-VLGNGSTRQNFNDIRSSIPGISSTILSRRIK 65 (111)
T ss_dssp STTHHHHHH-HHTSSSSCBCHHHHHHTSTTCCHHHHHHHHH
T ss_pred CccHHHHHH-HHhcCCCCCCHHHHHHHccCCCHHHHHHHHH
Confidence 579888885 455777767799999999 999999887776
No 402
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=35.05 E-value=52 Score=28.29 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=31.6
Q ss_pred hchHHHHHHHHHHHh-cCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALKT-GRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~~-GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
|..-+...+..+++. |-..+++..+|+.||++|..+-.+++.
T Consensus 245 l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 245 LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp CCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 344455666666755 334678999999999999999998875
No 403
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=35.05 E-value=43 Score=26.13 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=25.7
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=. |+|.+||++.|+.++.+-..+++
T Consensus 29 ~~~G~~-~s~~~IA~~agvs~~tlY~~F~s 57 (194)
T 2q24_A 29 SEEGLD-AHLERIAREAGVGSGTLYRNFPT 57 (194)
T ss_dssp HHHCTT-CCHHHHHHHTTCCHHHHHHHCCS
T ss_pred HhcCcC-CCHHHHHHHhCCChHHHHHHcCC
Confidence 357988 99999999999999999888766
No 404
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=34.75 E-value=45 Score=25.65 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=24.2
Q ss_pred hcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 184 TGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 184 ~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.. ..++|.+||++.|+.++.|-..+++
T Consensus 29 ~~-~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (190)
T 2v57_A 29 DH-PTAALGDIAAAAGVGRSTVHRYYPE 55 (190)
T ss_dssp TC-TTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred Hc-CCCCHHHHHHHhCCCHHHHHHHcCC
Confidence 44 8899999999999999999888876
No 405
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=34.74 E-value=15 Score=29.06 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCCCCchhhhcccCCCCCCCcccccccCCCcccccccccccCCCCC
Q 040593 176 RKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDPPPNLLMLSATLPDKPTPTVLVNEVKHSEPIVAETTVHAVEPKS 255 (342)
Q Consensus 176 ~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ppP~ll~mSa~lpdE~~~~~~~~E~~~~~~v~~ets~~a~e~~~ 255 (342)
.++..++.. --.++.+||.+||+++..|..||+- |... |..+
T Consensus 10 ~~i~~~~~~--~p~~~~~la~~~~~~~~~~~~~l~~-------l~~~----------------G~l~------------- 51 (121)
T 2pjp_A 10 QKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLRQ-------AAQQ----------------GIIT------------- 51 (121)
T ss_dssp HHHGGGCSS--SCEEHHHHHHHTTCCHHHHHHHHHH-------HHHT----------------TSEE-------------
T ss_pred HHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHHH-------HHHC----------------CCEE-------------
Confidence 455555643 3358999999999999999998862 1111 0000
Q ss_pred CCCCCCccccccccccccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChh---hHHhhhhhhhhccCCCCCC
Q 040593 256 KVEEPVHDRQHRWSAQKRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRR---RIVKWFEDKRAEEGVPECR 328 (342)
Q Consensus 256 ~~~lP~~~~q~~w~kRTrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~Lpes---rVQVWFQNRRAKd~vp~~R 328 (342)
|+. ...+-.+..-....+.|...+..+..-++ .++...+|++++ .|-.+|...+-=.++-+.|
T Consensus 52 ----~i~---~~~~~~~~~~~~~~~~l~~~~~~~~~it~---ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd~R 117 (121)
T 2pjp_A 52 ----AIV---KDRYYRNDRIVEFANMIRDLDQECGSTCA---ADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDH 117 (121)
T ss_dssp ----EEE---TTEEEEHHHHHHHHHHHHHHHHHHSSEEH---HHHHHHHTSCHHHHHHHHHHHHHHTSEEEETTEE
T ss_pred ----Eec---CCceECHHHHHHHHHHHHHHHHHCCCccH---HHHHHHHCCcHHHHHHHHHHHhhcCCeEeeCCEe
Confidence 000 11111122234556667777777765555 456667799999 8888886544333333333
No 406
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=34.64 E-value=28 Score=27.18 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=27.2
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=..++|.+||++.|+.++.|...+.+
T Consensus 22 ~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 51 (195)
T 3frq_A 22 KRCGPIEFTLSGVAKEVGLSRAALIQRFTN 51 (195)
T ss_dssp HHHHHHHCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HhhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 467889999999999999999999988876
No 407
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=34.60 E-value=39 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=27.2
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.+.|=.+|+|.+||++.|+.++.|...+++-
T Consensus 58 ~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK 88 (236)
T 3q0w_A 58 EDRPLADISVDDLAKGAGISRPTFYFYFPSK 88 (236)
T ss_dssp HHSCGGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHcCcccCCHHHHHHHhCCcHHHHHHHCCCH
Confidence 3569999999999999999999998887753
No 408
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=34.57 E-value=62 Score=23.91 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=23.4
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..+.++||+.+|+.++.|-.|.++
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5689999999999999999999987
No 409
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=34.40 E-value=8.4 Score=32.22 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
+..-+.++.-.-+..| .++..||+.||+.|+.|--||++..
T Consensus 143 ~~~~~~~~i~~l~~~G---~s~~~Ia~~l~vs~~Tvyr~l~~~~ 183 (193)
T 3uj3_X 143 LTKAEWEQAGRLLAQG---IPRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp --------------------------------------------
T ss_pred CCHHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 3333455555556667 6999999999999999999998854
No 410
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=34.38 E-value=28 Score=30.85 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=43.5
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCCC
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPEC 327 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~~ 327 (342)
..||..|.++|.-+.+ .....+||+.+|+++..|....+|=+.|-|+..+
T Consensus 196 ~~Lt~re~~vl~~~~~------G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~~~ 245 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSR------GKTNWEIATILNISERTVKFHVANVIRKLNANNR 245 (265)
T ss_dssp CCCCHHHHHHHHHHHT------TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSH
T ss_pred CCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCH
Confidence 5799999999998864 2345788999999999999999999999999764
No 411
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=34.34 E-value=34 Score=25.60 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=28.0
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|..-|...|..-...| .+++++||+.||++++.|-..|+
T Consensus 30 ~l~~~~~~iL~~l~~~~--~~~~~ela~~l~~~~~tvs~~l~ 69 (139)
T 3bja_A 30 DISYVQFGVIQVLAKSG--KVSMSKLIENMGCVPSNMTTMIQ 69 (139)
T ss_dssp TCCHHHHHHHHHHHHSC--SEEHHHHHHHCSSCCTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC--CcCHHHHHHHHCCChhHHHHHHH
Confidence 45555666666554544 58888999999888887776665
No 412
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=34.17 E-value=60 Score=25.49 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=30.6
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
|+......|..||+.-. =++...|+.||+.|..+-.+|+.
T Consensus 55 l~~~Er~~I~~aL~~~~--gn~~~AA~~LGIsR~TL~rkLkk 94 (98)
T 1eto_A 55 LAEVEQPLLDMVMQYTL--GNQTRAALMMGINRGTLRKKLKK 94 (98)
T ss_dssp HHHHHHHHHHHHHHHTT--TCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--CCHHHHHHHhCCCHHHHHHHHHH
Confidence 44455667888887633 25788999999999999988874
No 413
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=34.12 E-value=67 Score=24.08 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=35.0
Q ss_pred ccccCCHHHHH-HHHHHhhhc-CCCCH-HHHHHHHHHhCCChhhHHhhhhhhhh
Q 040593 270 AQKRLKKVQVK-TLEMVYRRS-KRPTD-AMISSIVQVTNLPRRRIVKWFEDKRA 320 (342)
Q Consensus 270 kRTrFT~~QLe-tLErvF~rT-~YPdv-~~RE~LA~~t~LpesrVQVWFQNRRA 320 (342)
++++||.++-. .++.++... .|++. ....++|..+|++...|..|.+.-+.
T Consensus 3 ~~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~ 56 (108)
T 2rn7_A 3 KNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHER 56 (108)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 35678887764 444444432 23332 46789999999999999999876554
No 414
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=34.09 E-value=43 Score=26.77 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=27.1
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+|+|.+||++.|+.++.+-..+++
T Consensus 22 ~~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~s 51 (206)
T 1vi0_A 22 AENGYHQSQVSKIAKQAGVADGTIYLYFKN 51 (206)
T ss_dssp HHHCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHhCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 468999999999999999999999888766
No 415
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=34.02 E-value=41 Score=27.43 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=26.9
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.|+.+...+++
T Consensus 27 ~~~G~~~~tv~~IA~~agvs~~t~Y~~F~s 56 (231)
T 2qib_A 27 SRRSPDEVSIDEIASAAGISRPLVYHYFPG 56 (231)
T ss_dssp HHSCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHcCchhcCHHHHHHHhCCCHHHHHHHCCC
Confidence 357999999999999999999999888765
No 416
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=33.98 E-value=18 Score=31.92 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=24.1
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
|....+-.++++||+.|||+++.|.-+|+
T Consensus 30 l~~~~~~~~~~eia~~~gl~~stv~r~l~ 58 (265)
T 2ia2_A 30 FDHRNQRRTLSDVARATDLTRATARRFLL 58 (265)
T ss_dssp CCSSCSSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33345679999999999999999988775
No 417
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=33.98 E-value=24 Score=24.94 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=20.9
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 46899999999999999998875
No 418
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=33.70 E-value=26 Score=25.22 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=21.3
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999999876
No 419
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=33.70 E-value=45 Score=27.19 Aligned_cols=30 Identities=13% Similarity=0.399 Sum_probs=27.2
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=..++|.+||++.|+.++.|...+.+
T Consensus 53 ~e~G~~~~tv~~IA~~AGvs~~tlY~~F~s 82 (214)
T 2guh_A 53 ATRPYREITLKDIAEDAGVSAPLIIKYFGS 82 (214)
T ss_dssp HHSCGGGCCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHcChhhcCHHHHHHHhCCCHHHHHHHcCC
Confidence 467999999999999999999999888865
No 420
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=33.47 E-value=31 Score=26.56 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=25.0
Q ss_pred hhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 168 VRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
..|..-|...|..-...|...+++++||+.||++++.|-..|+
T Consensus 37 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~ 79 (148)
T 3jw4_A 37 LGLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQ 79 (148)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHH
Confidence 3455666666766666655568888888888888877766654
No 421
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.42 E-value=52 Score=23.50 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcC-ccccHHHHHHHh-----cCCHHHHHHHhc
Q 040593 174 QLRKLAYALKTGR-RKVSVKSLAAEL-----CLDRAVVLEMLG 210 (342)
Q Consensus 174 Ql~rLarAL~~GR-RKvsIk~LA~EL-----~LDRa~VL~wLR 210 (342)
|...+-.+|.... +-+++++|+..| +++++.|---|+
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~ 60 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 4445556676544 679999999999 999999866554
No 422
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=33.41 E-value=26 Score=24.40 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57899999999999999998865
No 423
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=33.14 E-value=60 Score=22.91 Aligned_cols=41 Identities=0% Similarity=-0.057 Sum_probs=33.5
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhh
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..|+...|..+-....-| .++||..+|++.+.|..|=++++
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 467888888887766544 58899999999999999988865
No 424
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=33.09 E-value=31 Score=26.58 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=26.8
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=..++|.+||++.|+.++.+-..+++
T Consensus 21 ~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 50 (186)
T 2jj7_A 21 GERGYEGTSIQEIAKEAKVNVAMASYYFNG 50 (186)
T ss_dssp HHHHHHHCCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHcCCccCCHHHHHHHhCCChhhhhhhcCC
Confidence 357888999999999999999999988866
No 425
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=33.06 E-value=43 Score=24.15 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=23.9
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.++||+.+|+.+..|-.|.++
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46789999999999999999999986
No 426
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=33.06 E-value=38 Score=24.56 Aligned_cols=26 Identities=12% Similarity=-0.047 Sum_probs=23.9
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.+.||+.+|+.++.|-.|.++
T Consensus 15 ~~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 15 SEYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45789999999999999999999987
No 427
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=33.03 E-value=29 Score=27.43 Aligned_cols=39 Identities=8% Similarity=0.129 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhh
Q 040593 279 VKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 279 LetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRR 319 (342)
|+.-...|...-| . .....||+..|++...|-..|.||-
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 5667788999999 6 6788999999999999999999975
No 428
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=33.00 E-value=38 Score=24.89 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=23.9
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.+.||+.+|+.++.|-.|.++
T Consensus 12 ~~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 12 EKGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999999987
No 429
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=32.89 E-value=50 Score=27.21 Aligned_cols=24 Identities=8% Similarity=0.382 Sum_probs=22.0
Q ss_pred ccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 189 VSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 189 vsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.++..||+.||+.|..|-.+|+++
T Consensus 159 ~s~~~Ia~~l~is~~tv~r~l~~~ 182 (183)
T 1gdt_A 159 LGASHISKTMNIARSTVYKVINES 182 (183)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSC
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhc
Confidence 589999999999999999999874
No 430
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=32.77 E-value=25 Score=24.58 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
.++||..+|++.+.|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57899999999999999998764
No 431
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=32.74 E-value=27 Score=26.51 Aligned_cols=24 Identities=8% Similarity=0.267 Sum_probs=21.6
Q ss_pred cccHHHHHHHhcCCHHHHHHHhcC
Q 040593 188 KVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 188 KvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
=+.|...|+.+|+++..|+..||.
T Consensus 25 ildI~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 25 FLDIEHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp EEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred EEeHHHHHHHhCCCHHHHHHHHHH
Confidence 367999999999999999999984
No 432
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=32.72 E-value=53 Score=25.35 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=26.9
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
...|=..++|.+||++.|+.++.|...+.+
T Consensus 22 ~~~G~~~~t~~~IA~~Agvs~~tly~~F~s 51 (194)
T 3dpj_A 22 YRQGFAQTSFVDISAAVGISRGNFYYHFKT 51 (194)
T ss_dssp HHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHcCcccCCHHHHHHHHCCChHHHHHHcCC
Confidence 468999999999999999999999888765
No 433
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=32.69 E-value=55 Score=25.02 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhcCccccHHHHHHHh-cCCHHHHHHHhc
Q 040593 171 KNWQLRKLAYALKTGRRKVSVKSLAAEL-CLDRAVVLEMLG 210 (342)
Q Consensus 171 ~~WQl~rLarAL~~GRRKvsIk~LA~EL-~LDRa~VL~wLR 210 (342)
..|++..|.. |..| ..++++||+.| |+++..|-..|+
T Consensus 21 ~~~~~~IL~~-L~~~--~~~~~eLa~~l~~is~~tvs~~L~ 58 (112)
T 1z7u_A 21 GKWKLSLMDE-LFQG--TKRNGELMRALDGITQRVLTDRLR 58 (112)
T ss_dssp STTHHHHHHH-HHHS--CBCHHHHHHHSTTCCHHHHHHHHH
T ss_pred CccHHHHHHH-HHhC--CCCHHHHHHHhccCCHHHHHHHHH
Confidence 5688877754 4455 47999999999 999999988776
No 434
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=32.58 E-value=30 Score=28.15 Aligned_cols=34 Identities=9% Similarity=0.206 Sum_probs=27.4
Q ss_pred HHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 178 LAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 178 LarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..-.+.|=.+|+|++||++.|+.|+.+-..+.+
T Consensus 40 ~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 73 (230)
T 2iai_A 40 VQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTG 73 (230)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSS
T ss_pred HHHHHHcCccccCHHHHHHHHCCChhHHHHhCCC
Confidence 3444568999999999999999999988765544
No 435
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=32.57 E-value=46 Score=26.94 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=27.3
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+.|=..++|.+||++.|+.|+.|...+.+
T Consensus 41 f~~~G~~~~t~~~IA~~aGvs~~tlY~~F~s 71 (217)
T 3hta_A 41 VGQKGIAGLSHRTVAAEADVPLGSTTYHFAT 71 (217)
T ss_dssp HHHHTGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHcCcccCCHHHHHHHcCCCcchhhhcCCC
Confidence 3467999999999999999999999887765
No 436
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=32.53 E-value=52 Score=26.02 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHHHH----HhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 176 RKLAYAL----KTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 176 ~rLarAL----~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.|..|+ +.|=..|+|.+||++.|+.++.|-..+++
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~F~s 53 (210)
T 3vib_A 14 HLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWHFKN 53 (210)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHHCCC
Confidence 4455554 57999999999999999999999988876
No 437
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=32.47 E-value=46 Score=25.81 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=24.9
Q ss_pred cCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 185 GRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 185 GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+..+.++||+.||+.+..|-.|+++
T Consensus 24 ~~~gltq~eLA~~lGis~~~is~ie~G 50 (104)
T 3trb_A 24 FLDKMSANQLAKHLAIPTNRVTAILNG 50 (104)
T ss_dssp HTTSCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 457899999999999999999999987
No 438
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.47 E-value=50 Score=26.77 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=27.2
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+|+|.+||++.|+.++.+-..+.+
T Consensus 54 ~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 83 (225)
T 2id3_A 54 AADGFDALDLGEIARRAGVGKTTVYRRWGT 83 (225)
T ss_dssp HHHCGGGCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHhCcccCCHHHHHHHHCCCHHHHHHHCCC
Confidence 457999999999999999999999988876
No 439
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.45 E-value=57 Score=21.75 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 176 RKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 176 ~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
+.|.. +..|. +.+++|..||+....|=..++
T Consensus 5 ~vl~l-~~~g~---s~~eIA~~l~is~~tV~~~~~ 35 (61)
T 2jpc_A 5 QVLKL-IDEGY---TNHGISEKLHISIKTVETHRM 35 (61)
T ss_dssp HHHHH-HHTSC---CSHHHHHHTCSCHHHHHHHHH
T ss_pred HHHHH-HHcCC---CHHHHHHHhCCCHHHHHHHHH
Confidence 34444 66674 889999999999999877664
No 440
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=32.36 E-value=29 Score=25.22 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=23.7
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.++||+.+|+.++.|-.|+++
T Consensus 19 ~~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 19 ELNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 35689999999999999999999987
No 441
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=32.28 E-value=32 Score=27.12 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=25.9
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=..|+|.+||++.|+.++.|-..+.+
T Consensus 25 ~~~G~~~~s~~~IA~~agvs~~t~Y~~F~s 54 (212)
T 2ras_A 25 EERGGAGLTLSELAARAGISQANLSRYFET 54 (212)
T ss_dssp HHHTSSCCCHHHHHHHHTSCHHHHTTTCSS
T ss_pred HHhCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 368999999999999999999988766655
No 442
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=32.23 E-value=18 Score=30.28 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=36.7
Q ss_pred hhhchHHHHHHHHHHHhcCcc--ccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRK--VSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRK--vsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..+..+|+..|+..+...+.- ..+..||..|||.-..|=-|+.|
T Consensus 101 t~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqN 146 (155)
T 3l1p_A 101 TSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSN 146 (155)
T ss_dssp CCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeecccc
Confidence 357899999999999866542 24678999999999999999976
No 443
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=32.17 E-value=54 Score=25.30 Aligned_cols=29 Identities=10% Similarity=0.319 Sum_probs=26.0
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=. ++|.+||++.|+.++.|.-.+++
T Consensus 23 ~~~G~~-~t~~~IA~~aGvs~~tly~~F~s 51 (190)
T 3jsj_A 23 YRDGVG-IGVEALCKAAGVSKRSMYQLFES 51 (190)
T ss_dssp HHHCTT-CCHHHHHHHHTCCHHHHHHHCSC
T ss_pred HHhCcc-ccHHHHHHHhCCCHHHHHHHcCC
Confidence 467999 99999999999999999888765
No 444
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=32.11 E-value=52 Score=26.52 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=27.1
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=..++|.+||++.|+.++.|...+.+
T Consensus 49 ~~~G~~~~t~~~IA~~AGvs~~tlY~~F~s 78 (221)
T 3g7r_A 49 YAEGIHSVGIDRITAEAQVTRATLYRHFSG 78 (221)
T ss_dssp HHHCSTTSCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHhCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 467999999999999999999999888775
No 445
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=31.98 E-value=30 Score=26.70 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=27.0
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
...|=..++|.+||++.|+.++.+...+.+
T Consensus 28 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (156)
T 3ljl_A 28 LRLGYDKMSYTTLSQQTGVSRTGISHHFPK 57 (156)
T ss_dssp HHTHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHhChhhcCHHHHHHHHCCCHHHHHHHCCC
Confidence 456999999999999999999999988776
No 446
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=31.97 E-value=52 Score=25.89 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 175 LRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 175 l~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
++.|...+..|. ..++..||+.||++|..|=..|+.
T Consensus 42 ~~~i~~~l~~~~-~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 42 VELISDLIREVG-EARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp HHHHHHHHHHHS-CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcCHHHHHHHhCcCHHHHHHHHHH
Confidence 445555666653 478999999999999999877763
No 447
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=31.96 E-value=9.7 Score=33.64 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=0.0
Q ss_pred cCccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 185 GRRKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 185 GRRKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
++++++|++||+++|+.++.|=--|.+.+
T Consensus 5 ~~~~~ti~dvA~~aGVS~~TVSrvLn~~~ 33 (348)
T 3bil_A 5 EKFRPTLKDVARQAGVSIATASRALADNP 33 (348)
T ss_dssp -----------------------------
T ss_pred cCCCCCHHHHHHHHCCCHHHHHHHHCCCC
Confidence 45568999999999999999999998865
No 448
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=31.95 E-value=37 Score=28.05 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=27.6
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
..+.|=.++||..||+++|+.+..+--.+++-
T Consensus 16 ~~~~G~~~~s~~~IA~~~Gvs~~slY~hF~~K 47 (207)
T 2xpw_A 16 LNETGIDGLTTRKLAQKLGIEQPTLYWHVKNK 47 (207)
T ss_dssp HHHHHHHHCCHHHHHHHHTCCHHHHHHHCCCH
T ss_pred HHhcCcccCCHHHHHHHhCCCcchHHHhcCCH
Confidence 34578889999999999999999998888763
No 449
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=31.89 E-value=59 Score=24.52 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=28.5
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-. ...+++++||+.||++++.|-..|+.
T Consensus 34 ~l~~~~~~iL~~l~---~~~~~~~ela~~l~~s~~tvs~~l~~ 73 (146)
T 2gxg_A 34 NLSYLDFLVLRATS---DGPKTMAYLANRYFVTQSAITASVDK 73 (146)
T ss_dssp TCCHHHHHHHHHHT---TSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh---cCCcCHHHHHHHhCCCchhHHHHHHH
Confidence 34455666665433 34689999999999999988777653
No 450
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=31.68 E-value=19 Score=31.76 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.7
Q ss_pred cCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 185 GRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 185 GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
..+..++++||+.|||+++.|..+|+
T Consensus 35 ~~~~~~~~eia~~~gl~kstv~r~l~ 60 (260)
T 2o0y_A 35 AHPTRSLKELVEGTKLPKTTVVRLVA 60 (260)
T ss_dssp TBSSBCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 35679999999999999999988765
No 451
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=31.66 E-value=51 Score=25.99 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=35.9
Q ss_pred hhchHHH-HHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 169 RLKNWQL-RKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 169 ~L~~WQl-~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
....|-. +||+-.+....-..+|.++|+..+|.++.+..|.+..
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4455644 5577777777888999999999999999999999875
No 452
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=31.58 E-value=45 Score=25.04 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=34.4
Q ss_pred hhchHHHHHHHHHHHhc---C--ccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 169 RLKNWQLRKLAYALKTG---R--RKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~G---R--RKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.+...|+..|...+..- . -......||..+||....|--|+.|-
T Consensus 13 ~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNr 61 (83)
T 2dmn_A 13 NLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINA 61 (83)
T ss_dssp SCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhh
Confidence 46778999999888753 1 12345689999999999999999874
No 453
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=31.49 E-value=28 Score=25.28 Aligned_cols=23 Identities=4% Similarity=0.182 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++.+.|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57899999999999999998865
No 454
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=31.40 E-value=39 Score=26.89 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccCCCC
Q 040593 273 RLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEGVPE 326 (342)
Q Consensus 273 rFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~vp~ 326 (342)
.||..+.+.|+-.... + ...+||..++++++.|.+...|=|.|-++.+
T Consensus 142 ~Lt~rE~~vl~~l~~g--~----s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~~ 189 (208)
T 1yio_A 142 SLTGREQQVLQLTIRG--L----MNKQIAGELGIAEVTVKVHRHNIMQKLNVRS 189 (208)
T ss_dssp TSCHHHHHHHHHHTTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred hcCHHHHHHHHHHHcC--C----cHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 4788888888776543 2 4578999999999999999999999999865
No 455
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=31.29 E-value=56 Score=25.68 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=27.6
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
.+.|=.+|+|.+||++.|+.|+.+-..+++-
T Consensus 23 ~~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~sK 53 (204)
T 3anp_C 23 RNRGFQETTATEIAKAAHVSRGTFFNYYPYK 53 (204)
T ss_dssp HHHCTTTCCHHHHHHHHTSCHHHHHHHCSST
T ss_pred HHcCcccccHHHHHHHcCCchHHHHHHcCCH
Confidence 4579999999999999999999998888763
No 456
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=31.18 E-value=18 Score=28.00 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=23.8
Q ss_pred HhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 183 KTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 183 ~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
+.|=.+++|.+||++.|+.|+.+-..++
T Consensus 31 ~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 58 (211)
T 3him_A 31 AKGYGATTTREIAASLDMSPGAVYPHYK 58 (211)
T ss_dssp HHCSTTCCHHHHHHHTTCCTTSSTTTCS
T ss_pred HcCCCcCCHHHHHHHhCCCcChhhhcCC
Confidence 6899999999999999999987655443
No 457
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=31.17 E-value=61 Score=25.70 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=30.6
Q ss_pred HHHHHHHH----HhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 175 LRKLAYAL----KTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 175 l~rLarAL----~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|..|+ +.|=.+|||.+||++.|+.++.+-..+++
T Consensus 15 ~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F~s 55 (211)
T 3bhq_A 15 REIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTD 55 (211)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 34555554 58999999999999999999999888766
No 458
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=31.14 E-value=29 Score=24.35 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
.++||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999999998875
No 459
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=30.76 E-value=9.8 Score=39.57 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=17.4
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+...|+.+|.-|.-==.++++++..
T Consensus 343 ~~~~i~~~~~KLD~im~llf~~~~~ 367 (649)
T 3tj1_A 343 LTQGIKELSTKLDSILTLVSTHVEE 367 (649)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3467899998887655667777764
No 460
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=30.58 E-value=70 Score=24.74 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCcc-----ccHHHHHHHhcCCHHHHHHHhc
Q 040593 173 WQLRKLAYALKTGRRK-----VSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 173 WQl~rLarAL~~GRRK-----vsIk~LA~EL~LDRa~VL~wLR 210 (342)
.=...|...+..|+-+ -|+..||++||+.|..|-.-|+
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~ 55 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQ 55 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3356677778887765 3899999999999999877654
No 461
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=30.54 E-value=70 Score=25.58 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=30.4
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|..-|...|..-...| -.+++++||..||++++.|-..|+
T Consensus 50 glt~~q~~vL~~L~~~~-~~~t~~eLa~~l~i~~~tvs~~l~ 90 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLP-PDQSQIQLAKAIGIEQPSLVRTLD 90 (166)
T ss_dssp TCCHHHHHHHHHHHHSC-SSEEHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC-CCCCHHHHHHHHCCCHhhHHHHHH
Confidence 45566766666544423 249999999999999999988765
No 462
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=30.50 E-value=77 Score=24.12 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=23.9
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.++||+.+|+.++.|-.|.++
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45689999999999999999999987
No 463
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=30.35 E-value=91 Score=24.64 Aligned_cols=48 Identities=6% Similarity=0.052 Sum_probs=36.1
Q ss_pred cccccCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCC--hhhHHhhhh
Q 040593 269 SAQKRLKKVQVKTLEMVYRR-----SKRPTDAMISSIVQVTNLP--RRRIVKWFE 316 (342)
Q Consensus 269 ~kRTrFT~~QLetLErvF~r-----T~YPdv~~RE~LA~~t~Lp--esrVQVWFQ 316 (342)
.+|..||.+|++.|..+|.. +-+-+......+.+.+|.+ ...++..+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~ 59 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 46778999999999999974 7788888888888887765 444555444
No 464
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=30.28 E-value=47 Score=24.39 Aligned_cols=22 Identities=9% Similarity=0.077 Sum_probs=21.0
Q ss_pred cHHHHHHHhcCCHHHHHHHhcC
Q 040593 190 SVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 190 sIk~LA~EL~LDRa~VL~wLR~ 211 (342)
++..+|++||+...-|=.|+|.
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir~ 36 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIHA 36 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999999974
No 465
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=30.14 E-value=70 Score=24.27 Aligned_cols=41 Identities=17% Similarity=0.008 Sum_probs=31.2
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.|..-|...|..-... ..+++++||+.||++++.|-..|+.
T Consensus 34 ~lt~~~~~iL~~l~~~--~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 34 DVTPEQWSVLEGIEAN--EPISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp SSCHHHHHHHHHHHHH--SSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc--CCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 4556666666655554 4689999999999999999887753
No 466
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=30.08 E-value=72 Score=24.73 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.9
Q ss_pred cCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 185 GRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 185 GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
|...++++.||..+|+.+..|-..|+.
T Consensus 23 ~~~~~s~~ela~~~~i~~~~v~~il~~ 49 (129)
T 2y75_A 23 GEGPTSLKSIAQTNNLSEHYLEQLVSP 49 (129)
T ss_dssp TSCCBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHCcCHHHHHHHHHH
Confidence 356799999999999999998777654
No 467
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=29.98 E-value=55 Score=26.14 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 176 RKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 176 ~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
++.-.||+..=.-++..+||+.+|+|+..|=.-|+
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik 56 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLY 56 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 44556666655699999999999999999866554
No 468
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=29.92 E-value=73 Score=25.56 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCccc-----cHHHHHHHhcCCHHHHHHHhc
Q 040593 175 LRKLAYALKTGRRKV-----SVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 175 l~rLarAL~~GRRKv-----sIk~LA~EL~LDRa~VL~wLR 210 (342)
...|..++..|+=+. ++..||++||+.|..|-+-|+
T Consensus 10 ~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~ 50 (129)
T 2ek5_A 10 ASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLT 50 (129)
T ss_dssp HHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHH
Confidence 456777777776544 999999999999999977654
No 469
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=29.91 E-value=35 Score=27.03 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=29.0
Q ss_pred HHHHHHH----HhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 176 RKLAYAL----KTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 176 ~rLarAL----~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.|..|+ +.|=..|+|.+||++.|+.++.+-..+++
T Consensus 16 ~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~yF~s 55 (205)
T 1rkt_A 16 EILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSS 55 (205)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSC
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhhhhCCC
Confidence 4455553 57999999999999999999998776654
No 470
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=29.79 E-value=31 Score=28.89 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=25.5
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=..++|..||+++|+.+..+.-.+.+
T Consensus 17 ~~~G~~~~s~~~IA~~aGvs~~tlY~~F~~ 46 (202)
T 4ac0_A 17 NEVGIEGLTTRKLAQKLGVEQPTLYWHVKN 46 (202)
T ss_dssp HHHHHHHCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HhcCcccCCHHHHHHHhCCCchhHHhhcCC
Confidence 345889999999999999999988766654
No 471
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=29.78 E-value=65 Score=22.65 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=37.5
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhccC
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAEEG 323 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAKd~ 323 (342)
..|+..|.+.|...|--.-- ......+||..+|+++..|..|...-+.+-+
T Consensus 9 ~~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35889999999998852100 1134578999999999999999877666554
No 472
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=29.64 E-value=33 Score=27.78 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=29.3
Q ss_pred HHHHHHH----HhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 176 RKLAYAL----KTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 176 ~rLarAL----~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.|+.|+ +.|=.+++|.+||++.|+.++.+-..+++
T Consensus 34 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 73 (226)
T 2pz9_A 34 RIVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFRS 73 (226)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhCcccCcHHHHHHHHCCChHHHHHHcCC
Confidence 4454444 56888999999999999999999888765
No 473
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=29.62 E-value=88 Score=21.54 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=36.1
Q ss_pred ccCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhC--CChhh---HHhhhh
Q 040593 272 KRLKKVQVKTLEMVYRR-----SKRPTDAMISSIVQVTN--LPRRR---IVKWFE 316 (342)
Q Consensus 272 TrFT~~QLetLErvF~r-----T~YPdv~~RE~LA~~t~--Lpesr---VQVWFQ 316 (342)
+.|+..|+..|..+|.. +-|.+......+...+| ++... |+.+|+
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45788999999999963 67888888888888887 55667 888886
No 474
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=29.60 E-value=11 Score=32.81 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcCCC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGDPP 213 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~pp 213 (342)
++++|++||+++|+.++.|=--|.+.+
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln~~~ 29 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLNQPQ 29 (339)
T ss_dssp ---------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Confidence 579999999999999999999998864
No 475
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=29.57 E-value=21 Score=27.63 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=25.4
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+|+|.+||++.|+.++.+-..+.+
T Consensus 25 ~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 54 (204)
T 3eup_A 25 NVKGLAGTSLTDLTEATNLTKGSIYGNFEN 54 (204)
T ss_dssp HHHHHHHCCHHHHHHHHTCCHHHHTTTSSS
T ss_pred HHcCcccCCHHHHHHHhCCCcHHHHHhCCC
Confidence 467999999999999999999988665544
No 476
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=29.49 E-value=62 Score=25.47 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=30.0
Q ss_pred HHHHHHH----HhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 176 RKLAYAL----KTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 176 ~rLarAL----~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.|..|+ +.|=..|||.+||++.|+.++.|--.+++
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~s 53 (194)
T 2nx4_A 14 SITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAG 53 (194)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhCcC
Confidence 4555554 57999999999999999999999888766
No 477
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=29.41 E-value=57 Score=26.14 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=26.9
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.|+.+-..+++
T Consensus 19 ~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 48 (228)
T 3nnr_A 19 NDKGERNITTNHIAAHLAISPGNLYYHFRN 48 (228)
T ss_dssp HHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHhChhhcCHHHHHHHhCCCCccchhcCCC
Confidence 357999999999999999999999888766
No 478
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=29.22 E-value=60 Score=27.19 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=28.5
Q ss_pred chHHHHHHHH---HHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 171 KNWQLRKLAY---ALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 171 ~~WQl~rLar---AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
..=|.+.|.. .++..-.-.++++||+.|||.+..|-.+|+
T Consensus 4 t~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 4 TERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 3445555544 334434568999999999999999887775
No 479
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=29.17 E-value=67 Score=25.33 Aligned_cols=30 Identities=7% Similarity=0.151 Sum_probs=27.2
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+|+|.+||++.|+.++.+-..+++
T Consensus 21 ~~~G~~~ts~~~IA~~aGvs~gtlY~~F~s 50 (197)
T 2gen_A 21 SEHGVDATTIEMIRDRSGASIGSLYHHFGN 50 (197)
T ss_dssp HHHCTTTCCHHHHHHHHCCCHHHHHHHTCS
T ss_pred HHcCcccCCHHHHHHHHCCChHHHHHHCCC
Confidence 468999999999999999999999888765
No 480
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=29.11 E-value=47 Score=25.28 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=23.9
Q ss_pred ccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 187 RKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 187 RKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
+..+.+.||+.+|+.++.|-.|.++-
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~G~ 58 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVERKR 58 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 56899999999999999999999883
No 481
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=29.10 E-value=50 Score=25.45 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=25.5
Q ss_pred hhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
.|..-|...|..-...| .+++++||+.||++++.|-..|+
T Consensus 40 ~lt~~~~~iL~~l~~~~--~~t~~ela~~l~i~~~tvs~~l~ 79 (155)
T 3cdh_A 40 GLRVPEWRVLACLVDND--AMMITRLAKLSLMEQSRMTRIVD 79 (155)
T ss_dssp TCCHHHHHHHHHHSSCS--CBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC--CcCHHHHHHHHCCCHHHHHHHHH
Confidence 34455555554333333 57888888888888887776664
No 482
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=28.92 E-value=57 Score=27.92 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=30.3
Q ss_pred hchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 170 LKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 170 L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+..++.+.| .+|..|+ +++++||+.||+.++.|-.-|+.
T Consensus 18 ~d~~~~~IL-~~L~~~~--~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 18 LEDTRRKIL-KLLRNKE--MTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HSHHHHHHH-HHHTTCC--BCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHH-HHHHcCC--CCHHHHHHHHCcCHHHHHHHHHH
Confidence 456666655 4666664 89999999999999999887753
No 483
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=28.87 E-value=36 Score=26.34 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=26.3
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=.+++|.+||++.|+.++.+-..+.+
T Consensus 28 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 57 (215)
T 3e7q_A 28 KRHGFQGASVRKICAEAGVSVGLINHHYDG 57 (215)
T ss_dssp HHHHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHcCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 356888999999999999999999887765
No 484
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=28.87 E-value=83 Score=22.70 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=23.8
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.++||..+|+.+..|-.|-++
T Consensus 25 ~~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 25 DAGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 36789999999999999999999987
No 485
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=28.86 E-value=63 Score=25.54 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=26.8
Q ss_pred HHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 181 ALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 181 AL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
-.+.|=. ++|.+||++.|+.++.|--.+++
T Consensus 25 f~~~G~~-~s~~~IA~~agvs~~tiY~~F~s 54 (224)
T 1t33_A 25 FGEYGLH-ATTRDIAALAGQNIAAITYYFGS 54 (224)
T ss_dssp HHHHGGG-SCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHhCcc-ccHHHHHHHhCCCHHHHHHhcCC
Confidence 3458999 99999999999999999988877
No 486
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=28.83 E-value=34 Score=24.02 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCChhhHHhhhhhhh
Q 040593 296 MISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 296 ~RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..++||..+|++...|..|-.+++
T Consensus 26 sq~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 26 TQEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCC
Confidence 357899999999999999998874
No 487
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=28.76 E-value=90 Score=24.76 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=27.7
Q ss_pred hhchHHHHHHHHHHHh----cCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 169 RLKNWQLRKLAYALKT----GRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 169 ~L~~WQl~rLarAL~~----GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
-|..-|...|..-... +....++..||+-|+++|+.+--.|.
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~ 58 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLT 58 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHH
Confidence 3555555554433232 33457999999999999998765543
No 488
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=28.69 E-value=82 Score=25.39 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=26.8
Q ss_pred HhcCccccHHHHHHHhcCCHHHHHHHhcCC
Q 040593 183 KTGRRKVSVKSLAAELCLDRAVVLEMLGDP 212 (342)
Q Consensus 183 ~~GRRKvsIk~LA~EL~LDRa~VL~wLR~p 212 (342)
+.|=.+++|.+||++.|+.|+.+-..+++-
T Consensus 35 ~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K 64 (185)
T 3o60_A 35 DRTFESISIKDLCEQARVSRATFYRHHKEI 64 (185)
T ss_dssp TCCTTTCCHHHHHHHHTCCHHHHHHHCSST
T ss_pred cCCcccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 468899999999999999999998887765
No 489
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=28.57 E-value=88 Score=23.66 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhc
Q 040593 176 RKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLG 210 (342)
Q Consensus 176 ~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR 210 (342)
..+...|+. +.++++++||++|++....|=..|.
T Consensus 5 ~~Il~~L~~-~g~vsv~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 5 IQVRDLLAL-RGRMEAAQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp HHHHHHHHH-SCSBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 344455543 5579999999999999888865553
No 490
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=28.56 E-value=47 Score=26.38 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=26.0
Q ss_pred HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 182 LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 182 L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+.|=..|+|.+||++.|+.++.|--.+++
T Consensus 28 ~~~G~~~~s~~~IA~~agvsk~tlY~yF~s 57 (199)
T 3crj_A 28 REHGYADLTIQRIADEYGKSTAAVHYYYDT 57 (199)
T ss_dssp HHHTTTTCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHcCcccCCHHHHHHHhCCChhHHhhhcCC
Confidence 357999999999999999999998776654
No 491
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.53 E-value=71 Score=25.41 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=30.1
Q ss_pred HHHHHH----HHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 176 RKLAYA----LKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 176 ~rLarA----L~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.|..| .+.|=..|||.+||++.|+.++.+--.+++
T Consensus 15 ~Il~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~F~s 54 (202)
T 2i10_A 15 VALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGS 54 (202)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCChHHHHHHhCC
Confidence 445555 468999999999999999999999888765
No 492
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=28.53 E-value=65 Score=24.47 Aligned_cols=43 Identities=12% Similarity=0.089 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhc
Q 040593 273 RLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAE 321 (342)
Q Consensus 273 rFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAK 321 (342)
.|+..|-+.|. .|- ......+||..+|+|...|..+...-|.+
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 68888888887 332 33356889999999999999988765544
No 493
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=28.49 E-value=60 Score=27.82 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=26.2
Q ss_pred HhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 183 KTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 183 ~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.|=.+++|.+||++.|+.++.+-..+.+
T Consensus 56 e~G~~~~S~~~IA~~AGVs~~tlY~hF~s 84 (273)
T 3c07_A 56 ERGYDRTTMRAIAQEAGVSVGNAYYYFAG 84 (273)
T ss_dssp HTCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred hCCccccCHHHHHHHHCCCHHHHHHHcCC
Confidence 46999999999999999999999888765
No 494
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=28.33 E-value=88 Score=24.13 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=31.7
Q ss_pred hhhchHHHHHHHHHHHhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 168 VRLKNWQLRKLAYALKTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 168 ~~L~~WQl~rLarAL~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
..|..-|...|..-...| .+++++||..||++++.|-..|+.
T Consensus 37 ~~lt~~q~~iL~~l~~~~--~~~~~eLa~~l~~~~~~vs~~l~~ 78 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWEEN--PQTLNSIGRHLDLSSNTLTPMLKR 78 (149)
T ss_dssp TTCCHHHHHHHHHHHHSS--SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 456666777776555544 589999999999999999887753
No 495
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=28.31 E-value=34 Score=24.45 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
.++||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998864
No 496
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=28.23 E-value=53 Score=26.01 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=36.5
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCChhhHHhhhhhhhhc
Q 040593 272 KRLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAE 321 (342)
Q Consensus 272 TrFT~~QLetLErvF~rT~YPdv~~RE~LA~~t~LpesrVQVWFQNRRAK 321 (342)
..|++.|.+.|...|... ....++|..+|+++..|..|...-|.+
T Consensus 21 ~~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp GGSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 468999999999886533 346889999999999999999876654
No 497
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=28.15 E-value=92 Score=25.33 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=23.8
Q ss_pred CccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 186 RRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 186 RRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
.+..+.++||+.+|+.++.|-.|.++
T Consensus 22 ~~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 22 SRGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp HTTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 36789999999999999999999987
No 498
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=28.08 E-value=39 Score=26.20 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=30.7
Q ss_pred HHHHHHH----HhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 176 RKLAYAL----KTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 176 ~rLarAL----~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.|..|+ +.|=..|+|.+||++.|+.++.|--.+++
T Consensus 22 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 61 (212)
T 3loc_A 22 AILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHhhhCCC
Confidence 4565554 67999999999999999999999988876
No 499
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=27.97 E-value=36 Score=24.69 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChhhHHhhhhhhh
Q 040593 297 ISSIVQVTNLPRRRIVKWFEDKR 319 (342)
Q Consensus 297 RE~LA~~t~LpesrVQVWFQNRR 319 (342)
..+||..+|++...|..|..+++
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999999875
No 500
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=27.95 E-value=31 Score=27.05 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=27.7
Q ss_pred HHHHHHH----HhcCccccHHHHHHHhcCCHHHHHHHhcC
Q 040593 176 RKLAYAL----KTGRRKVSVKSLAAELCLDRAVVLEMLGD 211 (342)
Q Consensus 176 ~rLarAL----~~GRRKvsIk~LA~EL~LDRa~VL~wLR~ 211 (342)
+.|..|+ ..|=..|+|.+||++.|+.++.|...+++
T Consensus 11 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 50 (178)
T 4hku_A 11 IILNMAEKIIYEKGMEKTTLYDIASNLNVTHAALYKHYRN 50 (178)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSS
T ss_pred HHHHHHHHHHHHhCcccccHHHHHHHhCcCHhHHHHHCCC
Confidence 4444444 57999999999999999999887655443
Done!